Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009985.1 Corchorus olitorius cultivar O-4 contig10017, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1729
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:879 original size:61 final size:61

Alignment explanation


    Indices: 784--905  Score: 219
    Period size: 61  Copynumber: 2.0  Consensus size: 61

        774 TGGATTAGAT

                                                                          
        784 CGGCTTCACCTATTATGGGCTGGACTAGACAGTCAAGATTATCAGCATGTG-CATTTCCCCA
          1 CGGCTTCACCTATTATGGGCTGGACTAGACAGTCAAGATTATCAGCATG-GACATTTCCCCA

                          *                                              
        845 CGGCTTCACCTATTGTGGGCTGGACTAGACAGTCAAGATTATCAGCATGGACATTTCCCCA
          1 CGGCTTCACCTATTATGGGCTGGACTAGACAGTCAAGATTATCAGCATGGACATTTCCCCA

        906 ATGGCGAGTA


Statistics
Matches: 59,  Mismatches: 1, Indels: 2
        0.95            0.02        0.03

Matches are distributed among these distances:
  60    1  0.02
  61   58  0.98

ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27


Consensus pattern (61 bp):   
CGGCTTCACCTATTATGGGCTGGACTAGACAGTCAAGATTATCAGCATGGACATTTCCCCA
Done.