Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009989.1 Corchorus olitorius cultivar O-4 contig10021, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5391
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:368 original size:14 final size:13

Alignment explanation


    Indices: 334--374  Score: 55
    Period size: 13  Copynumber: 3.1  Consensus size: 13

        324 AGCATCCTCG

                   * *   
        334 TGAAAACAAATTT
          1 TGAAAACCATTTT

                         
        347 TGAAAACCATTTT
          1 TGAAAACCATTTT

                          
        360 TGAAAAACCATTTT
          1 TG-AAAACCATTTT

             
        374 T
          1 T

        375 TTTGAAAAAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  13   13  0.52
  14   12  0.48

ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37


Consensus pattern (13 bp):   
TGAAAACCATTTT
Done.