Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000999.1 Corchorus olitorius cultivar O-4 contig00999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2538
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:566 original size:21 final size:20

Alignment explanation


    Indices: 528--572  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 20

        518 TGCTATTGGA

                         *       
        528 GAATCTTGAGTATTTGAATGT
          1 GAATCTTGAGTATATGAAT-T

                                 
        549 GAATCTATGAGTA-ATGAATT
          1 GAATCT-TGAGTATATGAATT

                
        569 GAAT
          1 GAAT

        573 TTAGGACTCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  20    5  0.23
  21   11  0.50
  22    6  0.27

ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38


Consensus pattern (20 bp):   
GAATCTTGAGTATATGAATT
Done.