Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009990.1 Corchorus olitorius cultivar O-4 contig10022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3825
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:596 original size:18 final size:18

Alignment explanation


    Indices: 569--603  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        559 AATTATTACA

                              
        569 TTGTTCATGAACAATTTT
          1 TTGTTCATGAACAATTTT

                 *           
        587 TTGTTTATGAACAATTT
          1 TTGTTCATGAACAATTT

        604 CAATTTTTGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51


Consensus pattern (18 bp):   
TTGTTCATGAACAATTTT
Done.