Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009991.1 Corchorus olitorius cultivar O-4 contig10023, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5287
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31


Found at i:2199 original size:20 final size:20

Alignment explanation


    Indices: 2170--2207  Score: 58
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2160 AAAATCAAAG

                 *       *      
       2170 TTAAATTTAAATTTAAGTAA
          1 TTAAAATTAAATTAAAGTAA

                              
       2190 TTAAAATTAAATTAAAGT
          1 TTAAAATTAAATTAAAGT

       2208 TAAATAAATA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42


Consensus pattern (20 bp):   
TTAAAATTAAATTAAAGTAA
Done.