Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009998.1 Corchorus olitorius cultivar O-4 contig10030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8868

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
474--529
18
3.1
18
75
10
51
26
41
1
30
1.66
1263--1292
15
2.0
15
100
0
60
60
33
6
0
1.23
1656--1697
11
4.0
11
78
12
52
59
2
38
0
1.10
1659--1697
20
2.0
20
94
0
69
58
2
38
0
1.12
2548--2584
5
7.4
5
100
0
74
18
0
0
81
0.70
3856--3885
15
2.0
15
100
0
60
46
13
0
40
1.43
4380--4431
2
25.0
2
80
7
50
44
11
0
44
1.40
5353--5415
20
3.0
21
80
13
67
47
9
17
25
1.77
5354--5474
22
5.5
23
73
12
94
40
9
14
34
1.80
5582--5607
2
13.0
2
100
0
52
50
0
0
50
1.00
6979--7966
439
2.3
437
85
3
1288
42
16
13
27
1.86

Tables:   1

The End!