Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009999.1 Corchorus olitorius cultivar O-4 contig10031, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4461
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29


Found at i:685 original size:1 final size:1

Alignment explanation


    Indices: 633--666  Score: 68
    Period size: 1  Copynumber: 34.0  Consensus size: 1

        623 ACTTTATCTG

                                              
        633 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

        667 CACTTTTAGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   33  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A
Done.