Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 100 of 402
Found at i:13684063 original size:26 final size:25
Alignment explanation
Indices: 13684033--13684084 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13684023 GTTGGCTTAG
13684033 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
* *
13684059 GCATATGGAGTTCATTTCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
13684084 G
1 G
13684085 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:13684595 original size:26 final size:26
Alignment explanation
Indices: 13684566--13684618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13684556 GTTGGCTTAG
13684566 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
13684592 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13684618 G
1 G
13684619 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13684792 original size:26 final size:26
Alignment explanation
Indices: 13684763--13684815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13684753 GTTGACTTAG
*
13684763 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
13684789 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13684815 G
1 G
13684816 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13685221 original size:26 final size:26
Alignment explanation
Indices: 13685184--13685236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13685174 TGCAGAGGGG
* *
13685184 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
13685210 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13685236 G
1 G
13685237 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13685557 original size:26 final size:26
Alignment explanation
Indices: 13685527--13685579 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13685517 GTTGGCTTAG
*
13685527 GCATATAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
13685553 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
13685579 G
1 G
13685580 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:13691286 original size:26 final size:26
Alignment explanation
Indices: 13691256--13691308 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13691246 GTTGGCTTAG
13691256 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13691282 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13691308 G
1 G
13691309 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13691685 original size:26 final size:26
Alignment explanation
Indices: 13691648--13691700 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13691638 GTTGACTTAG
* *
13691648 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
13691674 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13691700 G
1 G
13691701 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13691741 original size:184 final size:184
Alignment explanation
Indices: 13691432--13691846 Score: 539
Period size: 184 Copynumber: 2.3 Consensus size: 184
13691422 TCCAGCTGAA
* * *
13691432 TGCCTGCACGCTCG-TTCTGTGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCATAC
1 TGCCTGCACGCCCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* *
13691496 GAAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTACGGCAGCAAGATCGACAGCACGC
65 GAAGTTCATTCCCAATCTAAGATCGAACCGAACTGAGGGTTACGACAGCAAGATCGACAGCACGC
* ** **
13691561 AAAGGGGA-TAGGGTCGATCCTTGACTTACGCATTCTGCCTCTCTGACCGGTTAAG
130 AAAGGGGACT-GGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGACTAAG
*
13691616 TGCCTGCAAGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
1 TGCCTGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
* ** * *
13691681 AAGTTCATTCCCAATCTAAGATCGGACC-AGACTGAGGGTTGTGACAGCAGGATCGACAGCACGG
66 AAGTTCATTCCCAATCTAAGATCGAACCGA-ACTGAGGGTTACGACAGCAAGATCGACAGCACGC
** * * ** *
13691745 AGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAG
130 AAAGGGGACTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGACTAAG
* * * *
13691800 TGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 TGCCTGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
13691847 TCCATGTCTA
Statistics
Matches: 200, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 1 0.00
184 195 0.98
185 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
TGCCTGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
AAGTTCATTCCCAATCTAAGATCGAACCGAACTGAGGGTTACGACAGCAAGATCGACAGCACGCA
AAGGGGACTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGACTAAG
Found at i:13692047 original size:159 final size:157
Alignment explanation
Indices: 13691674--13692059 Score: 397
Period size: 159 Copynumber: 2.4 Consensus size: 157
13691664 CCCAGTCTAA
* * * * *
13691674 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGTGGCAGCAGGATCCACA
* * * *
13691739 GCACGGAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGTGCC
65 GCACAGAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTGAGTGCC
* * *
13691804 TGCACGCCCATTTCATGGGTTGGCTTAG
130 AGCACGCCCATTTCATGAGTTGACTTAG
* * * * * * *
13691832 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGTCGGACCGAGGGTTATGGTAGCAGGA-CCA
1 GCATACGGAGTTCATTCCCA-GTCTAAGA--TCGGACCGACCGAGGGTTGTGGCAGCAGGATCCA
* *
13691894 CCAGTACACAGA-GGGGGA-TCGGGTCGATCCTCGGCTTACGCATTATGCCTCTCCGGTC-AGCT
63 -CAG--CACAGAGGGGGGACT-GGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGA-CT
* *
13691956 TAGTGCCAGCACGCTCATTTCATGAGTTGACTTAG
123 GAGTGCCAGCACGCCCATTTCATGAGTTGACTTAG
* * * *
13691991 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGTACCGAGAGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGTGGCAGCAGGATCCACA
13692056 GCAC
65 GCAC
13692060 GCAGACGGGA
Statistics
Matches: 182, Mismatches: 34, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
157 9 0.05
158 46 0.25
159 116 0.64
160 11 0.06
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGTGGCAGCAGGATCCACAG
CACAGAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACTGAGTGCCA
GCACGCCCATTTCATGAGTTGACTTAG
Found at i:13694033 original size:503 final size:507
Alignment explanation
Indices: 13693063--13694050 Score: 1136
Period size: 503 Copynumber: 1.9 Consensus size: 507
13693053 TAAGCATACA
* * * *
13693063 GAGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGACCAGCAGCAGGAT
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGAACAACAGCAGGAT
* * * * * * * *
13693128 CGATAGCACGTTGGGGGAGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCCT
66 CGACAGCACG-TGAGGGAGACCGGGCCGATCCCCGGCCTACACATTCTACCTCTCCGACCGGCCT
* * * *
13693193 TTTCGGTCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
130 TCTCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
* *
13693258 CAGTCTAAGCATATGGAGTTCATTCCCAGTCAAAGATCGAATCGAAATGAGGGTTGCGGTAGTAG
195 CAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATAGAATCG--A-GA--G-TGCGGTAG-AG
* ** *
13693323 GATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCTTGC
253 GATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGGC
**
13693388 TGAGCGCCCACACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
318 TGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * *
13693453 CTAGCTGAACCAAGGGTTGTGGCAGCGGAACCGATAGAACGTAAAGGGGGATCGGGCCGATCCCT
383 CCAACCGAACCAAGGGTTGTGGCAGCGGAACCGACAGAACG-AAAGGGGGATCCGACCGATCCCT
*
13693518 GACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCTCGAATGGGTCGACTTAGGCATATG
447 GACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCTCGAATGGGTCGACTTAGGCATATG
* ** *
13693579 GAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGACAGCAGGAACAACAGTAGGAT
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGAACAACAGCAGGAT
* * * * *
13693644 TGGCAGCACG-GAGGGAGGACCGGGCCGATCTCTGGCCTACACATTCTACCTCTCCGGCCGGCC-
66 CGACAGCACGTGAGGGA-GACCGGGCCGATCCCCGGCCTACACATTCTACCTCTCCGACCGGCCT
* * * * *
13693707 TCTCTGGCCGGCTGAGCGCTCGCATGCTCGTTTTATGGGTTGACTTAGGCATGCGGAGTTCATCC
130 TCTC-GGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* * * *
13693772 CCAGTCTAAGCATACGGAGTTCATTGCTAGTCTAAGATAGAATCG-GA-T-C-G-AG-GGTTTCG
194 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATAGAATCGAGAGTGCGGTAGAGG-ATCG
* * ** * **
13693831 GCAGCACGCAGGGGGGATCGGGTTGATCCTCGGGTTACGCATTCTGCCTCT-CGGACTGGCTGAG
258 ACAGCACGCAGGGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGG-CTGGCTGAG
* * *
13693895 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
322 CGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
** * * * * *
13693960 CCGAACTGAGGGTTGTGGCAGCGGGACCGGCAGCAAAC-AGAGGTGTA-CCGACCTGAT-CCTCG
387 CCGAACCAAGGGTTGTGGCAGCGGAACCGACAG--AACGAAAGGGGGATCCGACC-GATCCCT-G
*
13694022 ACTTACGCATTATGCCTCTCTGATCGGCT
448 ACTTACGCATTATGCCTCTCCGATCGGCT
13694051 TAACACCCGA
Statistics
Matches: 397, Mismatches: 67, Indels: 29
0.81 0.14 0.06
Matches are distributed among these distances:
502 12 0.03
503 174 0.44
504 2 0.01
505 4 0.01
506 1 0.00
507 1 0.00
511 2 0.01
514 8 0.02
515 129 0.32
516 64 0.16
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (507 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGAACAACAGCAGGAT
CGACAGCACGTGAGGGAGACCGGGCCGATCCCCGGCCTACACATTCTACCTCTCCGACCGGCCTT
CTCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATAGAATCGAGAGTGCGGTAGAGGATCGACA
GCACGCAGGGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
CACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGA
ACCAAGGGTTGTGGCAGCGGAACCGACAGAACGAAAGGGGGATCCGACCGATCCCTGACTTACGC
ATTATGCCTCTCCGATCGGCTCAGCGCTCGAATGGGTCGACTTAGGCATATG
Found at i:13695254 original size:503 final size:507
Alignment explanation
Indices: 13694277--13695258 Score: 1115
Period size: 503 Copynumber: 1.9 Consensus size: 507
13694267 TAAGCATACA
* ** *
13694277 GAGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGGACTAGCAGCAGGAT
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGACTAACAGCAGGAT
* * * * * * *
13694342 CGATAGCACATTGGGGGAGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCCT
66 CGACAGCAC--TGGGGGAGACCGGGCCGATCCCCGGCCTACACATTCTACCTCTCCGACCGGCCT
* * * *
13694407 TTTCGGTCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
129 TCTCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
* *
13694472 CAGTCTAAGCATATGGAGTTCATTCCCAGTCAAAGATCGAATCGAAATGAGGGTTGCGGTAGTAG
194 CAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATAGAATCG--A-GA--G-TGCGGTAG-AG
* ** *
13694537 GATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCTTGC
252 GATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGGC
**
13694602 TGAGCGCCCACACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
317 TGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * *
13694667 CTAGCTGAACCAAGGGTTGTGGCAGCGGAACCGATAGAACGTAAAGGGGGATCGGGCCGATCCCT
382 CCAACCGAACCAAGGGTTGTGGCAGCGGAACCGATAGAACGCAAAGGGGGACCGGGCCGATCCCC
*
13694732 GACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCTCGAATGGGTCGACTTAGGCATATG
447 GACTTGAGCATTATGCCTCTCCGATCGGCTCAGCGCTCGAATGGGTCGACTTAGGCATATG
* ** *
13694793 GAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGACAGCAGGAAC-AACAGTAGGA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGG-ACTAACAGCAGGA
* * * * *
13694857 TTGGCAGCAC-GGAGGGAGGACCGGGCCGATCTCTGGCCTACACATTCTACCTCTCCGGCCGGCC
65 TCGACAGCACTGG-GGGA-GACCGGGCCGATCCCCGGCCTACACATTCTACCTCTCCGACCGGCC
* * * * *
13694921 -TCTCTGGCCGGCTGAGCGCTCGCATGCTCGTTTTATGGGTTGACTTAGGCATGCGGAGTTCATC
128 TTCTC-GGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
* * * *
13694985 CCCAGTCTAAGCATACGGAGTTCATTGCTAGTCTAAGATAGAATCG-GA-T-C-G-AG-GGTTTC
192 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATAGAATCGAGAGTGCGGTAGAGG-ATC
* * ** * **
13695044 GGCAGCACGCAGGGGGGATCGGGTTGATCCTCGGGTTACGCATTCTGCCTCT-CGGACTGGCTGA
256 GACAGCACGCAGGGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGG-CTGGCTGA
* * *
13695108 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
320 GCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * ** * * * *
13695173 ACCGAACTGAA-GGTTGTGGCAGTGGGATTG-TCAGCATGCAGAGGGGGACCGGGTCGATCCCCG
385 ACCGAAC-CAAGGGTTGTGGCAGCGGAACCGAT-AGAACGCAAAGGGGGACCGGGCCGATCCCCG
*
13695236 ACTTGAGCATTCTGCCTCTCCGA
448 ACTTGAGCATTATGCCTCTCCGA
13695259 CCGGTTGAGC
Statistics
Matches: 390, Mismatches: 68, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
502 6 0.02
503 175 0.45
504 4 0.01
505 1 0.00
506 1 0.00
507 1 0.00
511 2 0.01
513 2 0.01
514 7 0.02
515 129 0.33
516 60 0.15
517 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (507 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGGACTAACAGCAGGAT
CGACAGCACTGGGGGAGACCGGGCCGATCCCCGGCCTACACATTCTACCTCTCCGACCGGCCTTC
TCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATAGAATCGAGAGTGCGGTAGAGGATCGACAG
CACGCAGGGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCC
ACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAA
CCAAGGGTTGTGGCAGCGGAACCGATAGAACGCAAAGGGGGACCGGGCCGATCCCCGACTTGAGC
ATTATGCCTCTCCGATCGGCTCAGCGCTCGAATGGGTCGACTTAGGCATATG
Found at i:13695336 original size:26 final size:26
Alignment explanation
Indices: 13695300--13695352 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13695290 GTTGACTTAG
13695300 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13695326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13695352 G
1 G
13695353 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13695957 original size:13 final size:13
Alignment explanation
Indices: 13695939--13695976 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
13695929 TGAACCCACC
13695939 TACAACATGAGTT
1 TACAACATGAGTT
*
13695952 TACAACATGAATT
1 TACAACATGAGTT
13695965 TACAACATGAGT
1 TACAACATGAGT
13695977 GCCCGCACGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (13 bp):
TACAACATGAGTT
Found at i:13696510 original size:26 final size:26
Alignment explanation
Indices: 13696460--13696512 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13696450 GTTGGCTTAG
* *
13696460 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
13696486 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
13696512 G
1 G
13696513 ATCCGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:13696533 original size:182 final size:183
Alignment explanation
Indices: 13696304--13696671 Score: 452
Period size: 184 Copynumber: 2.0 Consensus size: 183
13696294 GTTGACTTAG
* * * * *
13696304 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGAACCAAGGGTTGCGGCAGCAGGATCGACA
* * * ** * * * *
13696369 ACACGCA-GGGGATCGGGCCGGTCCCCGGTTTGCACATTTTGCCTCTTCAACCTGCTGAGCGCCC
66 ACACGCAGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCAACCGGCTGAGCACCC
* * *
13696433 GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * *
13696486 GCATACGAAGTTCATTCCCAATCTAAGATCCGA-TCGAATCGAGGGTTGCGGCAGCAGGATTGGC
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACT-GAACCAAGGGTTGCGGCAGCAGGATCGAC
* * ***
13696550 AGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCAC
65 AACACGCA-GGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCAACCGGCTGAGCAC
*
13696615 CCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
13696670 GC
1 GC
13696672 CCCAGTCAGA
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
181 1 0.01
182 59 0.38
184 95 0.61
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGAACCAAGGGTTGCGGCAGCAGGATCGACA
ACACGCAGGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCAACCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:13697061 original size:355 final size:355
Alignment explanation
Indices: 13696423--13697065 Score: 871
Period size: 355 Copynumber: 1.8 Consensus size: 355
13696413 CTTCAACCTG
* * * *
13696423 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
* * * *
13696488 ATACGAAGTTCATTCCCAATCTAAGATCCGATCGAATCGAGGGTTGCGGCAGCAGGATTGGCAGC
66 ATACGAAGTTCATTCCCAATCTAAGATCCGACCGAATCGAGGGTTGCGACAACAGGATCGGCAGC
13696553 ACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCACCCG
131 ACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCACCCG
** *
13696618 CACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
196 CACGCCCGTTTCATGGGTTGGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
* *
13696683 CGAGGGTTGTGGTAGTAGGACCGGTAACGAGATCGATAGCACGCAGAGCGGGACTGAGTTGGTCC
261 CGAGGGTTATGGCAGTAGGACCGGTAACGAGATCGATAGCACGCAGAGCGGGACTGAGTTGGTCC
13696748 TCGACTTGTGCATTATGCCTCTCTGGCCGA
326 TCGACTTGTGCATTATGCCTCTCTGGCCGA
* *
13696778 CTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAG
* * * * * * * * *
13696842 CGTACGGAGTTCATTCCCAGTTTAAGATCGGACCGGA-CTGAGGTTTGTGACAATAGGATCGGCA
65 CATACGAAGTTCATTCCCAATCTAAGATCCGACCGAATC-GAGGGTTGCGACAACAGGATCGGCA
* * * ** * * *
13696906 GCACGCAGGGGGGATCGGGTCGATTCCTGGA-TTGCGTATTCTGCCTCTCC-GATCGGCTGATCG
129 GCACGCAGGGGGGACCAGGCCGA-TCCCCGACTTGCGCATTCTGCCTCTCCTG-TCGGCTGAGCA
* ** *
13696969 CCCGCATGCCCGTTTCATGGGTTGGCTTAGACATAGGGAGTTTATTCCATGTCTAAGCCCCAGTC
192 CCCGCACGCCCGTTTCATGGGTTGGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
13697034 GGATCGAGGGTTATGGCAGTGGGACCGGTAAC
257 AGACCGAGGGTTATGGCAGTAGGACCGGTAAC
13697066 ACGCAGAGGG
Statistics
Matches: 245, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
354 2 0.01
355 235 0.96
356 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (355 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
ATACGAAGTTCATTCCCAATCTAAGATCCGACCGAATCGAGGGTTGCGACAACAGGATCGGCAGC
ACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCACCCG
CACGCCCGTTTCATGGGTTGGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
CGAGGGTTATGGCAGTAGGACCGGTAACGAGATCGATAGCACGCAGAGCGGGACTGAGTTGGTCC
TCGACTTGTGCATTATGCCTCTCTGGCCGA
Found at i:13697333 original size:26 final size:26
Alignment explanation
Indices: 13697304--13697354 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13697294 GTTGGGTTAG
*
13697304 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
13697330 GCATACAGAGTTCATTTCCAGTCTA
1 GCATACAGAGTTCATTTCCAGTCTA
13697355 GGATCATACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:13699422 original size:26 final size:26
Alignment explanation
Indices: 13699392--13699443 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13699382 GTTGACTTAG
*
13699392 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13699418 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13699444 AATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13699724 original size:159 final size:159
Alignment explanation
Indices: 13699561--13699920 Score: 397
Period size: 158 Copynumber: 2.3 Consensus size: 159
13699551 TGCCCGTTTT
* ** * * *
13699561 GTGGGTTGGCTTAAGCATTTTG-AGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGT
1 GTGGGTTGGCTTAGGCA-TACGAAGTTCATTCCATGTCTAAGCACCAGATCGGACCAAGGGTTGC
* * * * *
13699624 GGTAGCGGGACCGACAGCACGCAAAGGGGGATCGGGCTGATCCCC-AGCTTGCGCATTATGCCTC
65 AGTAGCAGGACCGACAGCACGC-AAGGGGGACCGAGCTGATCCCCGA-CTTGCGCATTATACCTC
* * *
13699688 TCCGATCGGCTCAGCGCCCTCACGCTCATTTC
128 TCCGATCGACTCAGCACCCGCACGCTCATTTC
* * * *
13699720 GTGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAG-ATCGGATCGGATCAAGGGTTGC
1 GTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT-GTCTAAGCACCAGATCGGACCAAGGGTTGC
** * * * *
13699783 AGTAGCAGGATGGACAGCACGCAGGGGGGACCGAGCTGATCCTCGACTTGTGCATTCTACCTCTC
65 AGTAGCAGGACCGACAGCACGCAAGGGGGACCGAGCTGATCCCCGACTTGCGCATTATACCTCTC
* * *
13699848 CGGTCGACTGAGCACCCGCACGCTCCTTTC
130 CGATCGACTCAGCACCCGCACGCTCATTTC
*
13699878 ATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
1 GTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
13699921 TACGTAGTTC
Statistics
Matches: 166, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
158 100 0.60
159 66 0.40
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGATCGGACCAAGGGTTGCA
GTAGCAGGACCGACAGCACGCAAGGGGGACCGAGCTGATCCCCGACTTGCGCATTATACCTCTCC
GATCGACTCAGCACCCGCACGCTCATTTC
Found at i:13699979 original size:185 final size:184
Alignment explanation
Indices: 13699734--13700103 Score: 555
Period size: 185 Copynumber: 2.0 Consensus size: 184
13699724 GTTGACTTAG
* * *
13699734 GCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGATCAAGGGTTGCAGTAGCAGGATGGACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCAGCAGCAGGATGGACA
* * *
13699799 GCACGCAGGGGGGACCGAGCTGATCCTCGACTTGTGCATTCTACCTCTCCGGTCGACTGAGCACC
66 GCACGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCACC
13699864 CGCACGCTCCTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAA
131 CGCACGCTCCTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-GTCTAA
* * **
13699918 GCATACGTAGTTCATTCCTAGTCTTAAGATCAGACCGGA-CTGAGGGTTGTGGCAGCAGGATGGA
1 GCATACGAAGTTCATTCCTAGTC-TAAGATCAGACCGGATC-AAGGGTTGCAGCAGCAGGATGGA
* * * *
13699982 CAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCCGGCCGATTGAGCG
64 CAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCA
* *
13700047 CCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 CCCGCACGCTCCTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
13700103 G
1 G
13700104 ATCAGACGGA
Statistics
Matches: 167, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
184 23 0.14
185 141 0.84
186 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGCAGCAGCAGGATGGACA
GCACGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCACC
CGCACGCTCCTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:13700200 original size:156 final size:158
Alignment explanation
Indices: 13699918--13700259 Score: 512
Period size: 156 Copynumber: 2.2 Consensus size: 158
13699908 CCATGTCTAA
* * *
13699918 GCATACGTAGTTCATTCCTAGTCTTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATGGAC
1 GCATACGGAGTTCATTCCCAGTC-TAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATGAAC
* *
13699983 AGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCCGGCCGATTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCCAGCCGATTGAGCAC
13700048 CCGCACGCTTC-TTTCATGGGTTGGCTTAG
130 CCGCACGC-TCGTTTCATGGGTTGGCTTAG
13700077 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACTGAGGGTTGTGGCAGCAGGATGAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATGAACA
* * * * * *
13700141 GCACGTA-GGGGGACCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCAGTCGGTTGAGCATC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCCAGCCGATTGAGCACC
*
13700205 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
13700233 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13700260 CATATGTAGT
Statistics
Matches: 168, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
155 5 0.03
156 96 0.57
157 36 0.21
158 10 0.06
159 21 0.12
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATGAACA
GCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCCAGCCGATTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13700256 original size:341 final size:342
Alignment explanation
Indices: 13699609--13700454 Score: 1040
Period size: 341 Copynumber: 2.4 Consensus size: 342
13699599 AAGCCCCAGT
* * * * * * *
13699609 CGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAAAGGGGGATCGGGCTGATCC-CCAGCT
1 CGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGC-AAGGGGGACCGGGCCGATCCTCGA-CT
* * * * *
13699673 TGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCTCACGCTCATTTCGTGGGTTGACTTAGGCAT
64 TGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
* * * * *
13699738 ACGAAGTTCATTCCTAGTCTAAGATCGGATCGGATCAAGGGTTGCAGTAGCAGGATGGACAGCAC
129 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCAGCAGCAGGATGAACAGCAC
* *
13699803 GCAGGGGGGACCGAGCTGATCCTCGACTTGTGCATTCTACCTCTCCGGTCGACTGAGCACCCGCA
194 GCAGGGGGGACCGAGCCGATCCTCGACTTGTGCATTCTACCTCTCCAGTCGACTGAGCACCCGCA
13699868 CGCTCCTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGTAGTTCAT
259 CGCTCCTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGTAGTTCAT
*
13699933 TCCTAGTCTTAAGATCAGAC
324 TCCCAGTC-TAAGATCAGAC
* *
13699953 CGGACTGAGGGTTGTGGCAGCAGGATGGACAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTG
1 CGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTG
* ** **
13700018 CGCATTCTCCCTCTCCGGCCGATTGAGCGCCCGCACGCTTC-TTTCATGGGTTGGCTTAGGCATA
66 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC-TCATTTCATGGGTTGGCTTAGGCATA
* **
13700082 CGGAGTTCATTCCCAGTCTAAGATCAGA-CGGA-CTGAGGGTTGTGGCAGCAGGATGAACAGCAC
130 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-AAGGGTTGCAGCAGCAGGATGAACAGCAC
* * * ** *
13700145 GTA-GGGGGACCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCAGTCGGTTGAGCATCCGCA
194 GCAGGGGGGACCGAGCCGATCCTCGACTTGTGCATTCTACCTCTCCAGTCGACTGAGCACCCGCA
* * *
13700209 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATATGTAGTTCA
259 CGCTCCTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCATACGTAGTTCA
*
13700273 TTCCCAGTCTAAGATCGGAC
323 TTCCCAGTCTAAGATCAGAC
* *
13700293 CGGACTGAGGGTTGTGGCAGCCGGACCAGTAGCAGGATTGACAGCACGCATGGGGGACCGGGCCG
1 CGGACTGAGGGTTGT-------GG--C---AGCAGGATCGACAGCACGCAAGGGGGACCGGGCCG
* * * *
13700358 ATTCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGTACGCTCATTTCATGGGTTG
54 ATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* *
13700423 GCTTAGGCGTACAGAGTTCATT-CCATGTCTAA
119 GCTTAGGCATACGGAGTTCATTCCCA-GTCTAA
13700455 TCCCCACCCG
Statistics
Matches: 431, Mismatches: 53, Indels: 28
0.84 0.10 0.05
Matches are distributed among these distances:
340 26 0.06
341 122 0.28
342 30 0.07
343 97 0.23
344 36 0.08
347 2 0.00
349 1 0.00
351 5 0.01
352 112 0.26
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (342 bp):
CGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTG
CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCAGCAGCAGGATGAACAGCACGC
AGGGGGGACCGAGCCGATCCTCGACTTGTGCATTCTACCTCTCCAGTCGACTGAGCACCCGCACG
CTCCTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGTAGTTCATTC
CCAGTCTAAGATCAGAC
Found at i:13700965 original size:159 final size:159
Alignment explanation
Indices: 13700527--13700979 Score: 439
Period size: 159 Copynumber: 2.8 Consensus size: 159
13700517 GGGACCTTGC
* * * * * * * * *
13700527 TGATCCCCGGCTTGCACATCCTACC-TCTCTAGCTAGCTGAGCGCCCGTACGCCCATTTCATTGG
1 TGATCCCCGGCTTGCACATTCTGCCTTTTCT-GCTGGCTGAGTGCCCGCATGCTCATTTCATGGG
* ** *
13700591 TTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTATGGCAGCG
65 TTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGCGGCAGCA
* *
13700656 GGACCGATAGCACGCAGAGGGGGATCGAGT
130 GGACCGACAGCACACAGAGGGGGATCGAGT
* * * * * * * *
13700686 CGATCCTCGGCTTGCACATTATGCCTCTTC-GGTCGGCTCAGTGCCCGCATGCTCGTTTCGTGGG
1 TGATCCCCGGCTTGCACATTCTGCCTTTTCTGCT-GGCTGAGTGCCCGCATGCTCATTTCATGGG
* * * * **** **
13700750 TTACCTTATGCATACGGAGTTCATTCTCA-ATCTAAGATTGAACCAGACCGAGGGTTGCGGCAGC
65 TTAGCTTAGGCATAAGGAGTTCATTC-CATGTCTAAGCCCCAGTCAGACCGAGGGTTGCGGCAGC
* *
13700814 AGGATCGACAGCACACA-AGGGGGGA-CTGGGT
129 AGGACCGACAGCACACAGA-GGGGGATC-GAGT
* *
13700845 TGATCCCCGACTTGCGCATTCTGCCTTTTCTGCTGGCTGAGTGCCCGCATGCTCATTTCATGGGT
1 TGATCCCCGGCTTGCACATTCTGCCTTTTCTGCTGGCTGAGTGCCCGCATGCTCATTTCATGGGT
* * * * * *
13700910 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCGGTAG
66 TAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGCGGCAGCAG
13700975 GACCG
131 GACCG
13700980 GCAGTGGGAT
Statistics
Matches: 226, Mismatches: 61, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
158 6 0.03
159 214 0.95
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
TGATCCCCGGCTTGCACATTCTGCCTTTTCTGCTGGCTGAGTGCCCGCATGCTCATTTCATGGGT
TAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGCGGCAGCAG
GACCGACAGCACACAGAGGGGGATCGAGT
Found at i:13701132 original size:26 final size:26
Alignment explanation
Indices: 13701102--13701153 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13701092 GTTGACTTAG
*
13701102 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13701128 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13701154 AATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13702296 original size:712 final size:697
Alignment explanation
Indices: 13701075--13702371 Score: 1571
Period size: 712 Copynumber: 1.8 Consensus size: 697
13701065 CTGAGCGCTT
13701075 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* * * * *
13701140 CATTCCCAGTCTAAAATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAACACGTAAGGGG
66 CATTCCCAATCTAAAATCAGACCAGACCGAGGGTTACAGCAGCAGGATC-GAAACACGTAAGGGG
* * * *
13701205 ACCAAGCCAATCCCTAGCTTACGGATTCTGCCTCTTCGGCCGGCTGAGTGCCCGCATGCCCGTTT
130 ACCAAGCCAATCCCTAGCTTACGCATTCTGCCTCTTCGACCGACTGAGCGCCCGCATGCCCGTTT
*
13701270 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTG
195 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTG
* * * *
13701335 GTAGCAGGATCGGCAACATGTAGAGGCGGACCGGGCTGATCCCCAGCTTGCGTATTATGCCTCTC
260 GTAGCAGGAGCGGCAACACGTAGAGGCGGACCGGACCGATCCCCAGCTTGCGTATTATGCCTCTC
* * * * *
13701400 TGGCCTGCTCAGCACCCACACACTCATTTTATGGGTTGACTTAGGCTTACGGAGTTCATTCCTAG
325 TGACCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * ** * *
13701465 TCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGATTGCACGCAAGGGGGGATCGGAT
390 TCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGGACCGGAC
* * *
13701530 CGATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGT
455 CGATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCACGCTCGTTCCATGGGT
*
13701595 TGGCTTAGGCATACAGAGTTCATTCCATGTC-AAGCATACGAAGTTCATTCCCAGTCTAAGATCG
520 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCG
13701659 AACTGGACTAAGGGTTGCAGTAGCAGGAATAGCAACAGGATCGACAGCACGTAGGGGGCGACCAG
585 AACTGGACTAAGGGTTGCAGTAGCAGGAATAGCAACAGGATCGACAGCACGTAGGGGGCGACCAG
13701724 GCTGATCCTCGGCTTACGCATTATGCCTCTTCGACCGACTAAGTGCCC
650 GCTGATCCTCGGCTTACGCATTATGCCTCTTCGACCGACTAAGTGCCC
* *
13701772 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATAC-GAAGT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG-AGT
** * * * * *
13701836 TCATTCCCAATCTAGGATCGGATCAGACCGAGGGTTGCAGCAGTAGGATC-AATAGAC-TACAGG
65 TCATTCCCAATCTAAAATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGAA-ACACGTA-A-G
** * * ** * *
13701899 GGGACCTGGTCGATCCCCCT-GCTTGTGCATTCTGCCTC-TCGATCGATTCGAGCGCACCGCA-G
127 GGGACCAAGCCAAT--CCCTAGCTTACGCATTCTGCCTCTTCGACCGACT-GAGCGC-CCGCATG
* *
13701961 TCCCGTTTTCGTGGGTTGGCTTAAGGCATAGGGAGTTCATGTCTATGTCTAAGCCCCAGCCAGGA
188 -CCCG-TTTCATGGGTTGGCTT-AGGCATAGGGAGTTCAT-TCCATGTCTAAGCCCCAGCC-GGA
* * * *
13702026 CCGAGGGTT-T-GTAGGCAGTGAGCTGGCAAGCAACGTAGAGAG-GAGATCGGACCGTTTCCCCG
248 CCAAGGGTTGTGGTA-GCAG-GAGC-GGCAA-C-ACGTAGAG-GCG-GACCGGACCG-ATCCCCA
* ** ** *
13702088 GCTTGCGTATTATGCCTC-CTTCGACCGGGTCAGTTCCCGTTACACTTCGTTTCATTGGGTTGAC
305 GCTTGCGTATTATGCCTCTC-T-GACCGGCTCAGCACCC-ACACAC-TCATTTCA-TGGGTTGAC
* * *
13702152 TTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATC
365 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATC
* * ** *
13702217 GACAGCACG-TAGGGGGGCACCAGG-CCGATCAC-CGGCTTGCTTATTCTGCCTCTCC-GATCGG
430 GACAGCACGCAAGGGGGG-ACC-GGACCGATC-CTCGGCTTACGCATTCTGCCTCTCCAG-CCGG
* * *
13702278 TTGAGCGCCCGTACGCTCGTTCCATGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
491 TTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
*
13702343 ATACGGAGTTCATTCCCAATCTAAGATCG
556 ATACGAAGTTCATTCCCAATCTAAGATCG
13702372 GACCGGATCG
Statistics
Matches: 498, Mismatches: 71, Indels: 46
0.81 0.12 0.07
Matches are distributed among these distances:
695 3 0.01
696 5 0.01
697 117 0.23
698 21 0.04
699 13 0.03
700 15 0.03
701 20 0.04
702 23 0.05
703 14 0.03
704 5 0.01
705 1 0.00
706 8 0.02
707 9 0.02
708 24 0.05
709 11 0.02
710 4 0.01
711 14 0.03
712 157 0.32
713 34 0.07
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (697 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
CATTCCCAATCTAAAATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGAAACACGTAAGGGGA
CCAAGCCAATCCCTAGCTTACGCATTCTGCCTCTTCGACCGACTGAGCGCCCGCATGCCCGTTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGG
TAGCAGGAGCGGCAACACGTAGAGGCGGACCGGACCGATCCCCAGCTTGCGTATTATGCCTCTCT
GACCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGGACCGGACC
GATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCACGCTCGTTCCATGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGA
ACTGGACTAAGGGTTGCAGTAGCAGGAATAGCAACAGGATCGACAGCACGTAGGGGGCGACCAGG
CTGATCCTCGGCTTACGCATTATGCCTCTTCGACCGACTAAGTGCCC
Found at i:13702365 original size:26 final size:26
Alignment explanation
Indices: 13702315--13702367 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13702305 GTTTGCTTAG
*
13702315 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13702341 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13702367 G
1 G
13702368 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13702477 original size:186 final size:185
Alignment explanation
Indices: 13702156--13702526 Score: 494
Period size: 186 Copynumber: 2.0 Consensus size: 185
13702146 GTTGACTTAT
* * * *
13702156 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGATAACAGGACCGACA
* ** * *
13702221 GCACGTAGGGGGGCACCAGGCCGATCACCGGCTTGCTTATTCTGCCTCTCCGATCGGTTGAGCGC
66 GCACGAAGGGGGGCACCAGGCCGATCACCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCAC
* *
13702286 CCGTACGCTCGTTCCATGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGTACGCTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * *
13702341 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTACGGTAACAGGACC-AGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGATAACAGGACCGA-C
* * * *
13702405 AGCATGCAAGGGGGGGACCGGGCCGATC-CCAGGCTTGCACATTCTGCCTCTCTGATCGGCTGAG
65 AGCACG-AAGGGGGGCACCAGGCCGATCACC-GGCTTGCACATTCTGCCTCTCCGATCGGCTGAG
* * * *
13702469 CACCCGTACGTTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
128 CACCCGTACGCTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
13702527 ACCCTAGCCG
Statistics
Matches: 160, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
184 1 0.01
185 61 0.38
186 98 0.61
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGATAACAGGACCGACA
GCACGAAGGGGGGCACCAGGCCGATCACCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCAC
CCGTACGCTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:13702703 original size:26 final size:26
Alignment explanation
Indices: 13702673--13702723 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13702663 TTGACTTAGG
*
13702673 CATACGGAGTTCATCCCCAATCTAAA
1 CATACAGAGTTCATCCCCAATCTAAA
* *
13702699 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAATCTAA
13702724 GATCAGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAA
Found at i:13702999 original size:159 final size:159
Alignment explanation
Indices: 13702803--13703201 Score: 414
Period size: 159 Copynumber: 2.5 Consensus size: 159
13702793 TTCTGAATTC
* * * * * *
13702803 TGCCTCTTCGGTCGACTGAGCACCCACACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTTCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * * * **
13702868 ATTCCATGTCTAAGCCCCAG-TTGGA-CAGAGGGTCGTGC-CAGC-GAAACCGGCAGCATGCAGA
66 ATTCCATGTCTAAGCACCAGACTGAACCA-AGGGT--TGCACAGCAG-AACCGACAGCACACAGA
* *
13702929 GGGGGACCGGGCTGATCCCCAGCCTGCGCATTA
127 GGGGGACCGAGCTGATCCCCAGCCTACGCATTA
* * * * *
13702962 TGCCTCTTCGATCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGTATATGGAGTTC
1 TGCCTCTTCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * * *
13703027 ATTCCCA-GTCTAAG-ATCAGACTGAACCAAGGGTTGCAACAGCAGGATCGATAGCACACAGAGG
66 ATT-CCATGTCTAAGCACCAGACTGAACCAAGGGTTGC-ACAGCAGAACCGACAGCACACAGAGG
* * * *
13703090 GGGACCGAGCTGATCTCCGGCTTACGCATTC
129 GGGACCGAGCTGATCCCCAGCCTACGCATTA
* * * * *
13703121 TGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTC
1 TGCCTCTTCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
13703186 ATTCCATGTCTAAGCA
66 ATTCCATGTCTAAGCA
13703202 TATGGAATTC
Statistics
Matches: 196, Mismatches: 36, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 6 0.03
159 180 0.92
160 7 0.04
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (159 bp):
TGCCTCTTCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACTGAACCAAGGGTTGCACAGCAGAACCGACAGCACACAGAGGGG
GACCGAGCTGATCCCCAGCCTACGCATTA
Found at i:13703212 original size:26 final size:26
Alignment explanation
Indices: 13703170--13703225 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13703160 TGGGTTGGCT
*
13703170 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAATTCATTCCCA-GTC
*
13703196 TAAGCATATGGAATTCATTCCCAGTC
1 TAAGCATACGGAATTCATTCCCAGTC
13703222 TAAG
1 TAAG
13703226 AGTTTGAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAATTCATTCCCAGTC
Found at i:13704513 original size:20 final size:20
Alignment explanation
Indices: 13704488--13704527 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
13704478 TTGTAGCTAA
13704488 AGCCTCAACTATAAATAGAG
1 AGCCTCAACTATAAATAGAG
13704508 AGCCTCAACTATAAATAGAG
1 AGCCTCAACTATAAATAGAG
13704528 GGCTGCTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (20 bp):
AGCCTCAACTATAAATAGAG
Found at i:13709951 original size:45 final size:45
Alignment explanation
Indices: 13709867--13711347 Score: 912
Period size: 45 Copynumber: 32.9 Consensus size: 45
13709857 AAAGTTTGAT
* * * *
13709867 GCAACCGCCCACACCAAGGCCCAGCATGTGCCGACGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * *
13709912 GCAACCACCTGTACCAAGGGTCATCTTGTACCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * *
13709957 GCAACCGCCCACACTAAGGGTCGGCTTGTGCAGATGGTGGTCAAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* ** * * * *
13710002 GCAACCGCCCACACC-AGAGGCCATTTTCTACCGATGATGGTTGAG
1 GCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAG
* ** * * *
13710047 TCAAGAGCCCACACCAAGGGTCGGCTTGTGCCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * *
13710092 GCAACCACCCGCACCAA-GGCCTAGCATGTGCCAATGGTGGTTGAG
1 GCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAG
** * * * * * *
13710137 GCAAGAGCCCGCACCAAAGGTCGGCTTGTACCAATGGTGGTTGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * ** * * *
13710182 GTAACAGCTTGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * *
13710227 GCAACCGCCCGCACCAAGGCCCAACATGTGCCGATGGTGTTTGAC
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
** * * *
13710272 ATAACCGCCTGCACC-AGAGGCCATCTTGTGCCAATGGTGGTCGAG
1 GCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAG
* * ** * *
13710317 GCAACCGCCCGTACCAAGGCCCAGCACGTGTCGATGGTGTTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * **
13710362 GCAACCGCCTGCACCAGGGGCCATCTTCTATCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * * *
13710407 GCAACCGCCCACTCTAAGGCCCAGCATGTGTCGATGGTGTTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * *
13710452 GCAACCGCCCGCACCAGGGGCCATCTTATGTCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * ** * *
13710497 GCAACCACCCGTACCAAGGGCTGGCTGGTGCCGATGGTGTTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* ** * *
13710542 GCAACCGTCTACACCAA-GGCTCGGCATGTGCCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAG
* * * ** * * * * * *
13710587 GCAATCGCCCGTACCATGACCCAACATGTGCCGATAGTGTTTGAT
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * *
13710632 GCAACTGCCTGCACTAGGGGCCATCTTGTACCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * *
13710677 GCAACCGCCCGCACCAAGGTCCAGCATGTACTGATGGTGTTCGAC
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
** * * * *
13710722 ATAACCGCCTGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * *
13710767 GCAACCGCCTGCACCAATGGTCGGCTAGTACCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * ** * *
13710812 GCAACCGCCCACACCAA-GGCCTGGCACGTGTCGATGGTGTTCGAG
1 GCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAG
* * * * * * *
13710857 GCAACCGACTGCAGCAGGGGCCATCTTCTGTCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * * *
13710902 GCAACTGCCCACTCCAAGGCCCAGCATGTGTCGATGGTGTTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * *
13710947 GTAACCGTCCGCACCAGGGGCCATCTTATGCCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * ** * *
13710992 GTAACCACCCGCACCAAGAG-TTGACTGGTGCCGATGGTGTTCGAG
1 GCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAG
** ** * *
13711037 GCAACCGCCTACACCAAGGATCGGCATGTGCCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * ** * * * * * *
13711082 GTAATCACCCGCACCACGACCCAACATGGGCTGATGGTGTTCGAT
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * * *
13711127 GCAACCGTCTGCACC-AGAGGTCATCTGGTACCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAG
* *** ** *
13711172 GCAATCGCGTACACCAAGGG-TTGACTTGTGCCGATGGTGGTCAAG
1 GCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAG
* * * * * ** * *
13711217 GAAATCGTCCGCACCAAGGGCCGGCATGTGTTGATGGTGATTGAG
1 GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* ** * *
13711262 GTAACTACCCGTACC-AGGGCCCAGCTTATGCCGATGGTGGTCGAG
1 GCAACCGCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAG
** * * *
13711307 GCAAGTGCCCGTACCAAAGGG-CAGCCTGTGCCGATGATGGT
1 GCAACCGCCCGCACC-AAGGGCCAGCTTGTGCCGATGGTGGT
13711348 GGATGCATGT
Statistics
Matches: 1064, Mismatches: 353, Indels: 38
0.73 0.24 0.03
Matches are distributed among these distances:
44 18 0.02
45 1026 0.96
46 16 0.02
47 4 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
GCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
Found at i:13712114 original size:26 final size:26
Alignment explanation
Indices: 13712078--13712156 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
13712068 GTTGACTTAG
* *
13712078 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13712104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13712130 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13712156 G
1 G
13712157 ATCAGACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13712604 original size:26 final size:26
Alignment explanation
Indices: 13712575--13712627 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13712565 GTTGGCTTAG
13712575 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
13712601 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13712627 G
1 G
13712628 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13712784 original size:159 final size:158
Alignment explanation
Indices: 13712130--13712786 Score: 478
Period size: 159 Copynumber: 4.2 Consensus size: 158
13712120 CCCAGTCTAA
* * *
13712130 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCAAGGGTTGTGGCAGTAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCAAGGGTTGCGACAGCAGGATCAGC
* * * ** * * *
13712194 AGCACACAGGAGGGACCGAGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCAC
* * * * *
13712259 CCGTATGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * * ** * * * * * *
13712288 GTATAGGGAGTTCATT-CCATGTCCAAGCCCCAGCT-GGACCGAGGGTTGTGGA-AACGGGACCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTG-CGACAGCAGGATCA
* * * ** * * * *
13712350 GCAGCACGCAAAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTTCGGCCTGCTCAG
63 GCAGCACGC-AGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAG
* *
13712415 CACCCGCACGCTCATTTCATGGTTTGACTTAG
127 CACCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * ** * *
13712447 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAAACCAAGGGTTACGGTAGTAAGATC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCAG-C
* * * * * ** *
13712511 AGCACGCAGGGGGGATCAGGTCGATCCTCGACTTACGCATTCTGCCTTTCGTAGGTTGGCTTAGG
65 AGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTC--CGGCCGGCTGA-G
** * * * *
13712576 CATACG-AAGTTCATTCCAT--G-T--C-TAA
127 CACCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * *
13712601 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCAGCA
* * * *
13712666 GCACGTAGGGAGGGATCGGGCCGATCC-CTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
66 GCACGCAGGG-GGGACCGGGCCGATCCTC-GACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCA
*
13712730 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
13712760 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13712787 CCCCAGTAGG
Statistics
Matches: 375, Mismatches: 101, Indels: 45
0.72 0.19 0.09
Matches are distributed among these distances:
152 4 0.01
153 17 0.05
154 63 0.17
155 37 0.10
156 1 0.00
157 4 0.01
158 87 0.23
159 138 0.37
160 19 0.05
161 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAGGATCAGCA
GCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:13712837 original size:24 final size:24
Alignment explanation
Indices: 13712809--13712863 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
13712799 TGAGGGTTAT
13712809 GACAGCAGGACCAGCAGTAGGATC
1 GACAGCAGGACCAGCAGTAGGATC
*
13712833 GACAGCAGGACTAGCAGTAGGATC
1 GACAGCAGGACCAGCAGTAGGATC
13712857 GACAGCA
1 GACAGCA
13712864 CGTAGAGGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.35, C:0.24, G:0.33, T:0.09
Consensus pattern (24 bp):
GACAGCAGGACCAGCAGTAGGATC
Found at i:13722675 original size:26 final size:26
Alignment explanation
Indices: 13722645--13722695 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13722635 TGACTCAGGT
13722645 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
* *
13722671 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
13722696 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:13723135 original size:158 final size:155
Alignment explanation
Indices: 13722669--13723169 Score: 524
Period size: 159 Copynumber: 3.2 Consensus size: 155
13722659 CCCAGTCTAA
* * * ** * *
13722669 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGTAAAATCGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGCAGCAGGATCGACA
* * ** *
13722734 GCACGTAGGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGACCAACTAAGCAC
65 GCACGTAGGGGGGATC-GGGCCGAT-CCCGGCTTGCGCATTATACCTCTTCGACCGGCTAAGCGC
* *
13722798 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTT-GCTTAG
* ** ** ** * *
13722827 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTAGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGA
* * * *
13722890 CAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCAATATACCTCTTCGGCCGGCTCAGC
63 CAGCACGTAG-GGGGGATCGGGCCGATCCC-GGCTTGCGCATTATACCTCTTCGACCGGCTAAGC
13722955 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCATGGGTTG-CTTAG
* * *
13722986 GCATACGGAGTTGATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGACA
* * * *
13723051 GCACGTAGGGGGGATCGGGCCGATACCCGACTTGCGCATTCTACCTCTTTGACCGGCTGAGCGCC
65 GCACGTAGGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTATACCTCTTCGACCGGCTAAGCGCC
* *
13723116 CGCACGCTTGTTTCTTGGGTTGCTTAG
129 CGCACGCTCGTTTCATGGGTTGCTTAG
*
13723143 GCATACGGAATTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13723170 CATACGGAGT
Statistics
Matches: 280, Mismatches: 52, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 27 0.10
158 121 0.43
159 125 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTATACCTCTTCGACCGGCTAAGCGCCCG
CACGCTCGTTTCATGGGTTGCTTAG
Found at i:13723193 original size:26 final size:26
Alignment explanation
Indices: 13723143--13723195 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13723133 GGTTGCTTAG
*
13723143 GCATACGGAATTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATATCTAA
*
13723169 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAATTCATT-CCATATCTAA
13723195 G
1 G
13723196 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATATCTAA
Found at i:13723558 original size:25 final size:26
Alignment explanation
Indices: 13723524--13723575 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13723514 GTTGACTTAG
*
13723524 GCATACGGAGTTCATT-TCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13723549 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13723575 G
1 G
13723576 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13731138 original size:45 final size:45
Alignment explanation
Indices: 13731045--13731138 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
13731035 ATGTGCCGGT
* * * *
13731045 ACCAAGGGCCAGCGCGTGTAGATGGTGGTCGATGCGACTGCCCGC
1 ACCAAGGGCCAGCGCGTGTAGATGGTGGTCGAGGCAACCGCCCAC
* * * *
13731090 ACCAAGGGCCAGTGTGTGTTGATGGTGGTCGAGGCAACCGCCTAC
1 ACCAAGGGCCAGCGCGTGTAGATGGTGGTCGAGGCAACCGCCCAC
13731135 ACCA
1 ACCA
13731139 GATCGAGGCA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.20, C:0.28, G:0.35, T:0.17
Consensus pattern (45 bp):
ACCAAGGGCCAGCGCGTGTAGATGGTGGTCGAGGCAACCGCCCAC
Found at i:13731209 original size:45 final size:45
Alignment explanation
Indices: 13731152--13733124 Score: 1327
Period size: 45 Copynumber: 43.8 Consensus size: 45
13731142 CGAGGCATGT
* * * * *
13731152 GCCCGCAACAAGGCCCGGCATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * **
13731197 GCCCACACCAAGGGCCATCTTCTACCAATAGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * *** * *
13731242 GCCCACACCGAGGGTTGGCTTATGCCGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13731287 GCCCACACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13731332 GCCCGCACCAAGGCCCAGCATGTGTCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
13731377 GCCTGCACTAGGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * ** * * **
13731422 GCCCGCACCAAGGGCCATCTTCTATCGATGGTGGTCGAAGTAAAA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * * * * * *
13731467 GCCTACACCTAGGGTC-GACTTGTGTCGATGGTGCTTGAGGTAATC
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACC
* * ** * * * *
13731512 GCCCGTACGAA-GGCCTAGCACGTGTCGATAGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13731557 ACCCGTACCGAGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * **
13731602 GCCCGCACCAAGAACCAGCATGTGCCGATGGTGTTCGACACAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* *
13731647 GCCGGCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * **
13731692 ACCCACACCAAGGGTCAGCTTGTGTTGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * ** * * *
13731737 GCCCGCACTAGGGGCCATTTTCTACCGATGGTGGTCTAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * ** * **
13731782 GCTCGCA-CTAGAGGCCATTTTCTATCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** *
13731827 GCCCGCACCAA-GGCCTAGCACGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * * * *
13731872 GCTCTTACCAAGGCCCGGCATGTGCCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * * *
13731917 GCCCGTACCAAGGCCCGGCATGTGTCGATGGTGTTCAACGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * * *
13731962 ACTTGCACCAGGGGCCATCTTGTGCCGATGGTGGTCCAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
13732007 GCCCGCACCAAAGGTCATCTTGTGCTGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13732052 ACCCGCACTAAGGGTCAGCTTGTGCAGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * ** * * * * **
13732097 ATCTGCACCAGGGGCCATTTTCTACCGATAGTGGTCGAGGTAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* *
13732142 GCCTGCACCGAA-GGCCGGCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACC-AAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* *** * * **
13732187 GCTCGCACTGGGGGCCATCTTCTATCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * **
13732232 ACCTGTACCAAGGCCCAACATGTGTCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * ** * * * *
13732277 GCCCGCACTAAGGGTC-GACTTGTATCGATGGTGCTTGAGGTAATC
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACC
** * * * * *
13732322 GCCCATACCAGGGGCCATCTTCTGCCAATGGTGGTCGAGGCAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * * *
13732367 ATCTGCACCAAGGCCCAGCATGTGCCGATGGTGGTCGAAGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** *
13732412 GCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTTAACGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** *
13732457 GCCCGCACCAGGGGCCATTTTGTGCCGATGGTGGTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13732502 GCCCGCACCAAGGG-CTGACTAGTGCCGATGGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACC
** * *
13732547 GCCCATACCAAGGGCC-GACTAGTGCCGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACC
* ** * *
13732592 GCCCGCACCAA-GGCCTGGCACGTGCCGATGGTGTTCAAGGCAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * **
13732637 GCCTGCACCAGGGGCCATCTTCTACTAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * ***
13732682 GCCTGCACCAA-GGCCTAGCAAGTGCCGATGGTGTTCGACATAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
13732727 GCCCACACC-AGGGGCATCTTGTGCCGATGGTGGTCGACGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13732771 ACCCGTACCAAGGGCC-GACTGGTGTCGATGGTGTTCGAGGTAACC
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACC
* * *
13732816 GCCCACACCAA-GGCTCGGCTTGTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13732861 GCCCGTACCAA-GGCCTAGCATGTGCCGATGGTGTTCGATGTAATC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * *
13732906 GCCTGCACC-AGAGGCCATCTTGTGCCGATGGTGGTCGAGGCAATC
1 GCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13732951 GCCCGTACCAAGGGTCGGCTTGTGCTGATGGTGGTCAAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13732996 GCCAGCACCAAAGGCTAG-TATGTGCTCGATGATGATCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCT-TGTGC-CGATGGTGGTCGAGGCAACC
* * * * **
13733042 GCCAGCA-CTAGGGCCCAGCTTGTGCCGATGATGGTCGAGGTAAGT
1 GCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13733087 GCTCGTACCAAAGGG-CAGCCTGTGCCGATGATGGTCGA
1 GCCCGCACC-AAGGGCCAGCTTGTGCCGATGGTGGTCGA
13733125 TGCATGTTCC
Statistics
Matches: 1486, Mismatches: 409, Indels: 66
0.76 0.21 0.03
Matches are distributed among these distances:
44 54 0.04
45 1372 0.92
46 55 0.04
47 5 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
Found at i:13733899 original size:26 final size:26
Alignment explanation
Indices: 13733869--13733921 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13733859 GTTGACTTAG
13733869 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
13733895 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13733921 G
1 G
13733922 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13734395 original size:26 final size:26
Alignment explanation
Indices: 13734359--13734411 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13734349 GTTGGCTTAG
* *
13734359 GCATATGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTAATT-CATAGTCTAA
13734385 GCATACGGAGTTAATTCATAGTCTAA
1 GCATACGGAGTTAATTCATAGTCTAA
13734411 G
1 G
13734412 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCATAGTCTAA
Found at i:13734765 original size:26 final size:26
Alignment explanation
Indices: 13734725--13734777 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13734715 GTTGACTTAG
*
13734725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
13734751 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
13734777 G
1 G
13734778 ATCGGACGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:13742354 original size:45 final size:45
Alignment explanation
Indices: 13742303--13742412 Score: 150
Period size: 45 Copynumber: 2.4 Consensus size: 45
13742293 GGGTGAGCAA
* * *
13742303 GTGCCGATGGTGGTTGGGGC-ATGTGCCCGCACCAAGGGCCAGCGT
1 GTGCCGATGGTGGTTGAGGCGA-CTACCCGCACCAAGGGCCAGCGT
*
13742348 GTGCCGATGGTGGTTGATGCGACTACCCGCACCAAGGGCCAGCGT
1 GTGCCGATGGTGGTTGAGGCGACTACCCGCACCAAGGGCCAGCGT
* *
13742393 GTGTCGATGGTGGTCGAGGC
1 GTGCCGATGGTGGTTGAGGC
13742413 AACCGCACGC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 56 0.98
46 1 0.02
ACGTcount: A:0.15, C:0.25, G:0.41, T:0.19
Consensus pattern (45 bp):
GTGCCGATGGTGGTTGAGGCGACTACCCGCACCAAGGGCCAGCGT
Found at i:13742424 original size:45 final size:45
Alignment explanation
Indices: 13742330--13742426 Score: 131
Period size: 45 Copynumber: 2.2 Consensus size: 45
13742320 GGCATGTGCC
* * * * *
13742330 CGCACCAAGGGCCAGCGTGTGCCGATGGTGGTTGATGCGACTACC
1 CGCACCAAGGGCCAGCGTGTGCCGATGGTGGTCGAGGCAACCACA
* *
13742375 CGCACCAAGGGCCAGCGTGTGTCGATGGTGGTCGAGGCAACCGCA
1 CGCACCAAGGGCCAGCGTGTGCCGATGGTGGTCGAGGCAACCACA
13742420 CGCACCA
1 CGCACCA
13742427 GATCGAGGCA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.20, C:0.31, G:0.35, T:0.14
Consensus pattern (45 bp):
CGCACCAAGGGCCAGCGTGTGCCGATGGTGGTCGAGGCAACCACA
Found at i:13742611 original size:45 final size:45
Alignment explanation
Indices: 13742460--13744188 Score: 1084
Period size: 45 Copynumber: 38.4 Consensus size: 45
13742450 AGGCTTGGCA
* * * * *
13742460 TGTGCCGATGGTGTTCGAGGCAACCG--CACACTAAGGGCTATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * ** **
13742503 TCTACCGATGGTGGTCGAGGAAAGAGCCCGCACCAAGGGCTGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * *
13742548 TGTGTCGATAGTGCTCGAGGCAACCGCCCGCACCAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * *
13742593 TCTACCAATGGTGGTCGAGGCAACCACCCGTACCAA-GTCTCAG-T
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CAGCT
* * * * * *
13742637 ACGTGCCGATGGTGTTTGAGGCAACTGCCCGCACCAGGGGCCAGCA
1 -TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13742683 TGTGCTGATGGTGTTTGAGGCAACCGCCCACACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * ** * *
13742728 TCTGCCAAAGGTGGTCGAGGTAAGAGCCCACACCAAGGGTCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13742773 TGTGCCGATGGTGCTCGAGGCAACCGCCTGTACGAA-GGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
** * * * * ** * *
13742818 CATGCTGATGGTGTTCGAAGAAACCGCCCGCACTGAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13742863 TGTGCCGATGCTGGTCGAGGTAACCGTCCGTACCAA-GGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
* * * * * * * *
13742908 TGTGCTGATGGTGTTCGATGCAATCACCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * *
13742953 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCATAGGTCGA-CT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGGGCCAGCT
* * * ** **
13742998 TGTGCTGATAGTGGTCGAGGCGACCGTTCGCACC-AGGGCCCCTATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG--CC-AGCT
* * * * *
13743045 TCTACCGATGGTGGTTGAGGCAACCGCCCACACCAA-GGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
* * * * * * * *
13743090 CGTGTCGATGGTGTTTGAGGCAACCGCCTGTACCAA-GGCCCGACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CT
* * * * * *
13743135 TGTGCCAATGGTGGTCGAGGTAACTGCCCGCACCAAGGCCCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13743180 TGTGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * **
13743225 TGTGCCGATGGTGGTCGATGCAACCACCCGTACCAAGGGTCTTCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* **
13743270 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACGAAGGGCCATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* ** ** * * *
13743315 TCTGTTGATGGTGGTCGAGGCAAGAGCTCGCACCAAGGGTCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * *
13743360 TGTGCCAATGGTGGTCGAGGTAACCGCCCGCACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * ** *
13743405 TGTGCCAATGGTGGTCGAGGTAAGAGCCCGCACCAAGGGTC-GACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CT
* * * * * *
13743450 TGTACCGATGGTGCTCGAGGTAACCGCCCGTACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* ** * ** * * * *
13743495 TTTATCGATGGTGGTCGAGGTAACTTCTCACACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13743540 TGTGCCGATGGTGTTCGAGGCAATCGCCCGTACCAAGGCCCAACAT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGC-T
* * ** * *
13743586 T-TGTCGATGGTGGTCGAGGCAACCGCCTGCACCAAGGTTCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* *** * *
13743630 TGTGCCGATGGTGTTCGACATAACCG-ACGTCACCAAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCG-CACCAA-GGGCCAGCT
* * * * ** *
13743676 TTTGCCAATGGTGTTCGAGGCAACCTCCTACACC-AGGGACCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAGCT
* * * *
13743721 TCTGCCGATGGTGGTCAAGGCAACCGCCCACACCAA-GGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
* * * *
13743766 TGTGCCGATGGTGTTTGATGCAACCGCCCGCACC-AGAGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCAGCT
* **
13743811 TGTACCGATGGTGGTCGAGGCAACCAACCGCACCAAGGGCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * * *
13743856 AGTGCCGATGGTGTTCGAGGTAACTGCCCACACCAA-AGCTTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CAGCT
*** * ** * * *
13743901 TGTGGTAATGGTGGTCAAGGCAATAGCCCGCACCATGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * ** * * * *
13743946 TGTGCCGATAGTGTTCGATGCAATTGCTCGTACCATGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
** * *
13743991 TGTGCTAATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * *
13744036 TGTGCCGATAGTGGTTGAGGCAACCGCCCGTACCAAGGGTCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* *
13744081 TGTGCCGATGGTGATCGAGGCAACCGTCCGCACC-AGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAGCT
* * ** * * *
13744126 TGTGCCAATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGG-TAGCC
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGGCCAGCT
* *
13744171 TGTGCCAATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
13744189 TGCATGTGGC
Statistics
Matches: 1277, Mismatches: 373, Indels: 70
0.74 0.22 0.04
Matches are distributed among these distances:
43 23 0.02
44 25 0.02
45 1140 0.89
46 56 0.04
47 32 0.03
48 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
Found at i:13743215 original size:182 final size:182
Alignment explanation
Indices: 13742867--13743217 Score: 386
Period size: 182 Copynumber: 1.9 Consensus size: 182
13742857 CCAGCATGTG
* * ** * * *
13742867 CCGATGCTGGTCGAGGTAACCGTCCGTACCAAGGCCTAGCATGTGCTGATGGTGTTCGATGCAAT
1 CCGATGCTGGTCGAGGCAACCGCCCACACCAAGGCCTAGCACGTGCTGATGGTGTTCGAGGCAAC
* * * * *
13742932 CACCTGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCACCCGCACCATAGGTCGAC
66 CACCTGCACCAAGGCCCATCATGTGCCAATGGTGGTCGAGGCAACCACCCGCACCATAGGCCGAC
* * * *
13742997 TTGTGCTGATAGTGGTCGAGGCGACCGTTCGCACCAGGGCCCCTATTTTCTA
131 ATGTGCCGATAGTGGTCGAGGCAACCGCTCGCACCAGGGCCCCTATTTTCTA
* * *
13743049 CCGATGGTGGTTGAGGCAACCGCCCACACCAAGGCCTAGCACGTG-TCGATGGTGTTTGAGGCAA
1 CCGATGCTGGTCGAGGCAACCGCCCACACCAAGGCCTAGCACGTGCT-GATGGTGTTCGAGGCAA
* * * **
13743113 CCGCCTGTACCAAGGCCCGA-CATGTGCCAATGGTGGTCGAGGTAACTGCCCGCACCA-AGGCCC
65 CCACCTGCACCAAGGCCC-ATCATGTGCCAATGGTGGTCGAGGCAACCACCCGCACCATAGG-CC
* * * *
13743176 GGCATGTGCCGATGGTGTTCGATGCAACCGC-CTGCACCAGGG
128 GACATGTGCCGATAGTGGTCGAGGCAACCGCTC-GCACCAGGG
13743218 GCCATCTTGT
Statistics
Matches: 137, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
181 5 0.04
182 131 0.96
183 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (182 bp):
CCGATGCTGGTCGAGGCAACCGCCCACACCAAGGCCTAGCACGTGCTGATGGTGTTCGAGGCAAC
CACCTGCACCAAGGCCCATCATGTGCCAATGGTGGTCGAGGCAACCACCCGCACCATAGGCCGAC
ATGTGCCGATAGTGGTCGAGGCAACCGCTCGCACCAGGGCCCCTATTTTCTA
Found at i:13745423 original size:158 final size:158
Alignment explanation
Indices: 13744949--13745450 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 158
13744939 CCCAGTCTAA
* * * **
13744949 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAGGGGTTGCGGCAGCAGGATCGACA
* * * *
13745014 GCATGCAGGGGGGATCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGA-TCAGCTAAGCGC
66 GCACGCAGGAGGGATCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACT-GGCTAAGCGC
* *
13745078 CCGCACG-CCTGTTTCATGGGTTGGCTTAG
130 TCGCACGTTC-GTTTCATGGGTTGGCTTAG
* * ** * *
13745107 GCATA-GCGACTTCATT-CCATGTCTAAG-CCCCAGTCGGACC-GAGGGTTGTGGCAGCGGGA-C
1 GCATACG-GAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCAG-GGGTTGCGGCAGCAGGATC
* * * * * * * *
13745167 TGACAGCACGCAGAGAGGGA-CTGGGTCGATTCTTGGCTTGCGTATTATGCCTCTTCGGCCGACT
62 -GACAGCACGCAG-GAGGGATC-GAGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACTGGCT
* ** * *
13745231 CAA-CGGTCGCACGCTT-GTTTTGTAGGTTGACTTAG
124 -AAGCGCTCGCACG-TTCGTTTCATGGGTTGGCTTAG
* * * *
13745266 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAGGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAGGGGTTGCGGCAGCAGGATCGACA
* * * * * *
13745331 GCACGTAGGAGGGATCGAGTCGATCCCCAGTTTACGCATTCTGCCTCTTCGACTGGCTGAGCGCT
66 GCACGCAGGAGGGATCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCGCT
13745396 CGCACGTTCGTTTCATGGGTTGGCTTAG
131 CGCACGTTCGTTTCATGGGTTGGCTTAG
13745424 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13745451 CATACGGAGT
Statistics
Matches: 264, Mismatches: 60, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
157 12 0.05
158 133 0.50
159 109 0.41
160 10 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAGGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGAGGGATCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCGCT
CGCACGTTCGTTTCATGGGTTGGCTTAG
Found at i:13745454 original size:26 final size:26
Alignment explanation
Indices: 13745424--13745476 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13745414 GTTGGCTTAG
13745424 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13745450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13745476 G
1 G
13745477 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13746028 original size:26 final size:26
Alignment explanation
Indices: 13745989--13746041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13745979 GTTGACTTAG
* *
13745989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
13746015 GCATACGGAATTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
13746041 G
1 G
13746042 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:13753658 original size:45 final size:45
Alignment explanation
Indices: 13753582--13755237 Score: 943
Period size: 45 Copynumber: 36.8 Consensus size: 45
13753572 CAAGGCATGT
* * * *
13753582 GCCCACACCAA-GGCCAGGCATGTGCCTATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCA-GCTTGTGCCGATGGTGGTCGAGGCAACC
** * * * * **
13753627 GCCTACACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * *
13753672 GCCCATACCAAGGGTCGGCTTGTGCCGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * *
13753717 GCCCGCACCAAGGGCCAGCTTCTATCGATGGTGGTCGAGGTAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13753762 GCCCGTACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * *
13753807 ACTCGTACC-AGGGACCAACATGTGCCGATGGTGTTCAAGGTAACC
1 GCCCGCACCAAGGG-CCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * **
13753852 GCCTGCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
13753897 GCCCACACCAAGGGCCAACTTGTGTCGGTGGTGCTGGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * ** * * *
13753942 GCCCGTACGAA-GGCTTAGCACGTGTCGATGGTGTTCGAGGCAATC
1 GCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
13753987 G-CCGTATCGAGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* ** * ** * *
13754031 GCCCACACCAA-GGCCTAGAATGTGTCGATGGTATTCGATGCAACT
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * * * * *
13754076 GCCTACATCAGGGGCCATCTTGGGTCGATGGTGGTCGAGGCTACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
**** * *
13754121 GCCCGCACCAAGGATGGGCTTGTGTCAATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** * * *
13754166 GCCCTTACC-AGGGACCA--TTTTCACCGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGG-CCAGCTTGT-GCCGATGGTGGTCGAGGCAACC
** * * * *
13754210 GCTTGCACCAA-GGCCTAGCATGTGCTGATGGTGTTCGAGGTAACC
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * * *
13754255 GCCTGCACTAAGGCCCGGCATGTGCCGATGGTGTTCGACGTAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
13754300 ACCCGTACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAAAC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
13754345 GCCCACACCAAGGGTCATCTTGTGTCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13754390 GCCTGTACTAAGGGTCAGCTTGTGCAGATGGTGGTCGAGGCAACA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
** ** * * * * * **
13754435 GTTCGCACC-AGAGGCCATTTTCTACCAATGATGGTTGAGGCAAGA
1 GCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13754480 GCCCGCACCAAGGGTCAGCTTATGCCGATTGTGGTTGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13754525 GCCCGCACC-AGGACCCATCTTCTGCCGATGGTGGTTGAGGCAACC
1 GCCCGCACCAAGG-GCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * ** * * * * *
13754570 GCCTGCACCAAGGCCCAGCAAGTGTCGATGGTGTTTGACGCAAGC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13754615 ACCCGGACCAGGGGCCATCTTGTACCGATAGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13754660 ACCCGCACCAAGGGCCAGCTAGTGCCGATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * ** * ** *
13754705 GCCCACACTAA-GGCTC-GACACGTGCCGATGGTGTTTAAGGCAACT
1 GCCCGCACCAAGGGC-CAG-CTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13754750 GCCTGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * * *
13754795 ACTCACACCAAGGCCCAGCATGTGCCAATGGTGTTCGACGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
13754840 GCTCACACCAGGGGCCATCTTGTACTGATAGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * ** * * *
13754885 ACCCTCACCAATGGTC-GGTTGATGTTGATGGTGTTCAAGGCAACT
1 GCCCGCACCAAGGGCCAGCTTG-TGCCGATGGTGGTCGAGGCAACC
* * * * * *
13754930 GCCCACACCAA-GGCTCGGCATGTGTCGATGGTGGTCGACGCAACT
1 GCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
13754975 GGCCGCACCATGGCCCAACATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * *
13755020 ACCCGCACC-AGAGGCCATCTTGTGCCGATGGTGGTTGAGGCAATC
1 GCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * *
13755065 GCCCTCACCAATGGTCAGCTTGTACCGATGGTGGTCGAGCCAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * * * *
13755110 GCCCGCACCAAGGGTCGGCATGTGTCGATGGTGATCGGGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * **
13755155 GACCACACC-AGGGCCTAGCTTGTACCGATGGCGGTCGAGGCAAGT
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACC
* * * * *
13755200 GCCCGTACCAAAGGACAGCCTGTGCCGATGATGGTCGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGA
13755238 TGCATGTGCC
Statistics
Matches: 1202, Mismatches: 378, Indels: 62
0.73 0.23 0.04
Matches are distributed among these distances:
43 5 0.00
44 90 0.07
45 1072 0.89
46 35 0.03
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACC
Found at i:13756223 original size:159 final size:158
Alignment explanation
Indices: 13755956--13756424 Score: 376
Period size: 158 Copynumber: 3.0 Consensus size: 158
13755946 AAGATCAGAT
* * * * *
13755956 CGAACTGAGGGTTACGGCAGCAGGATCGGTAACACGTAGGGGGGATCGGGCCGATCCCCGGCTTG
1 CGAACCGAGGGTTACGGCAGCAGGACCGGCAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
* * * * * * * *
13756021 CGTATTCTGCCTCTCCGACCGGCTGAGTGTCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAG
66 CGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAG
13756086 GAAGTTCATTTCATGTCTAAGCCCCAGC
131 GAAGTTCATTTCATGTCTAAGCCCCAGC
* * * *
13756114 CGAACCGAGGGTTATGGCAGC-GAGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCTCCGGCT
1 CGAACCGAGGGTTACGGCAGCAG-GACCGGCAACACGCAG-GGGGGACCGGGCCGATCCCCGGCT
* * *
13756178 TGCGCATTATGCCTCTTCGACCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
64 TGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCAT
* * **
13756243 A-CAGAGTTCATTCCCA-GTCTAAG-ATCAGAC
129 AGGA-AGTTCATT-TCATGTCTAAGCCCCAG-C
* * ** * ** * * * * * *
13756273 C-AGACTGAGGGTTGCGATAGTAGGATTGACAGCACGTAGGGGGGGA-TGGGTCGATCCCCGACT
1 CGA-ACCGAGGGTTACGGCAGCAGGACCGGCAACACGCA-GGGGGGACCGGGCCGATCCCCGGCT
* * * * * * ** * *
13756336 TGCACATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCAT
64 TGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCAT
* *
13756401 A-CAGAGTTCATTCCATGTCTAAGC
129 AGGA-AGTTCATTTCATGTCTAAGC
13756425 ATACAGAGTT
Statistics
Matches: 253, Mismatches: 48, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 123 0.49
159 122 0.48
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CGAACCGAGGGTTACGGCAGCAGGACCGGCAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
CGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAG
GAAGTTCATTTCATGTCTAAGCCCCAGC
Found at i:13756433 original size:26 final size:26
Alignment explanation
Indices: 13756397--13756449 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13756387 GTTGGCTTAG
13756397 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13756423 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13756449 G
1 G
13756450 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13764465 original size:45 final size:45
Alignment explanation
Indices: 13764401--13765981 Score: 1111
Period size: 45 Copynumber: 35.2 Consensus size: 45
13764391 ACTCCCCCCG
* ** * *
13764401 TGGTGGTCGAGGCAACCACCCGCACTGAGGCCCAGCATGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * *
13764446 TGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * ** *
13764491 TGGTGTTTGACGCAATCGCCTACACCAAGGGCCATCTTGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* ** * *
13764536 TGGTGGTTGAGGCAATAG-CCGCACCAAGGGTCAGCTTGTGTCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* ** * ** * *
13764580 TGGTGGTCTAGGCAACCGCTTGCACCAAGTGCCATTTTCTACCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * ***
13764625 TAGTGGTCGAGGCAACCACCCGCACCAA-GGCCTAGCACATGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGA
** * * *
13764670 TGGTTTTCGAGGCAACCGCCCGCACCAA-GGCCTGACATGTGTCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGA
* * * *
13764715 TGGTGGTCGAGGCAACCACCCACACCAAGGGTC-GTCTTGTGTCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGA
** * * * *
13764760 TGGTGGTCGAGGCAATTGCCCGCACTAAGGGTCGGCTTGTGCAGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* *
13764805 TGGTGGTCGAGGCAACCGCCTGCACCAAGGGCCAGCTTATGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * * *
13764850 TGGTGGTCGAGGCAATCGCCTGCACCAGGGGCCATCTTTTACCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * * *
13764895 AGGTGGTCGAGGTAACCACCCGCACCAAGGCCCAGCATGTGCCAA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* ** * * **
13764940 TGGTGGTCGAGGTAAGAGCCCACACCAAGGGTCAGCTTGTATCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * * *
13764985 TGGTGCTCGAGGCAACCGCCTGCACCAGGGGCCATCTTCTGTCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * *
13765030 TGGTGGTCGAGGCAACCGCCTGCAGCAAGGCCCAGCATGTGTCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * ** * * *
13765075 TGGTGTTCGAGGTAACCGTTCGCACCAA-GGCCTAGCATGTCCCAA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCTTGTGCCGA
*** * * * * *
13765120 TGGTGGTCGAGATGACCACCCGTACCAAGGCCCAGCATGTGCCAA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * ** * *
13765165 TGGTGTTTGACGCAATCGCTAGCACC-AGAGGCCATCTTGTGCTGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGA
* * * * * * *
13765210 TGGTGGTCGAGGTAACTGCCTGTACCAAGGGTCGGCTAGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * * ** *
13765255 TGGTGCTCGAGGTAACCGCCCGCACTAAGGCCCGGCACGTACCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * *
13765300 TGGTGTTCGAGGCAACCGCCTGCACCAAGGGCCATCTTCTACCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* **
13765345 TGGTGGTC--GGCAATCGCCCGCACCAAGACCCAG-TATGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT-TGTGCCGA
* * *
13765388 TGATGGTCGAGGTAACCGCCCGCACCAAGGGCCAGCTAGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * * * ***
13765433 TGGTGCTTGAAGTAACCCCCCGCACCAAGGCCCAGCACATGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * * * * *
13765478 TGGCGTTCGAGGTAACCGCCTGCACCAGGGGCCATCTTCTACCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * *
13765523 TGGTGGTCGAGGTAACCACCCACACCAAGGCCCAGCATGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * *
13765568 TGGTGTTCGATGCAACCGCCCGCACCAGGGGACATCTTGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * * * * *
13765613 TGGT-GTCGAGGTAACCACCTGTACCAAGGGCCAGCTGGTGTCAA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * ** * *
13765657 TGGTGTTCGAGGCAACCGCCCACACCAA-GGCTTGACATGTGCTGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGA
* * * * * ** *
13765702 TGGTGGTCAAGGTAATCGCCCGTACCACGACCCAGCATGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * ** * * *
13765747 TGGTGTTCGATGCAACCGCCCTTACCAGGGGTCATCTTGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * * *
13765792 TAGTGGTCGAGGCAATCGCCTGCACCAAGGGCC-GACTTGTACCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGA
* * * * * * * *
13765837 TGGTGGTTGAGGTAACCACCCACACCAAAGGTCGGCATGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
* * *
13765882 TGGTGATCGAGGCAACCGCCTGCACC-AGGGCCCAGCTTGTGTCGA
1 TGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAGCTTGTGCCGA
* * ** * * *
13765927 TGGCGGTCGAGGTAAGTGCCCGTACCAAAGGG-CAGCCTGTGCTGA
1 TGGTGGTCGAGGCAACCGCCCGCACC-AAGGGCCAGCTTGTGCCGA
*
13765972 TGATGGTCGA
1 TGGTGGTCGA
13765982 TGCATGTGCC
Statistics
Matches: 1174, Mismatches: 341, Indels: 42
0.75 0.22 0.03
Matches are distributed among these distances:
42 1 0.00
43 33 0.03
44 83 0.07
45 1040 0.89
46 13 0.01
47 4 0.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
TGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGA
Found at i:13765738 original size:179 final size:176
Alignment explanation
Indices: 13765248--13765824 Score: 528
Period size: 179 Copynumber: 3.2 Consensus size: 176
13765238 GGGTCGGCTA
* * * * * * * * *
13765248 GTGCCGATGGTGCTCGAGGTAACCGCCCGCACTAAGGCCCGGCACGTACCGATGGTGTTCGAGGC
1 GTGCCGATGGTG-TCGAGGTAACCACCTGCACCAAGGGCCAGCACATGCCAATGGCGTTCGAGGC
** * * * *
13765313 AACCGCCTGCACCAAGGGCCATCTTCTACCGATGGTGGTC-GGCAATCGCCCGCACCAAGACCCA
65 AACCGCCCACACCAGGGGACATCTGCT--CGATGGTGGTCAGGTAATCGCCCGCACCAAGACCCA
* * * * * * * * *
13765377 GTATGTGCCGATGATGGTCGAGGTAACCGCCCGCACCAAGGGCCAGCTA
128 GCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGACATCTT
* * * * * * *
13765426 GTGCCGATGGTGCTTGAAGTAACCCCCCGCACCAAGGCCCAGCACATGCCGATGGCGTTCGAGGT
1 GTGCCGATGGTG-TCGAGGTAACCACCTGCACCAAGGGCCAGCACATGCCAATGGCGTTCGAGGC
** * * * * * *
13765491 AACCGCCTGCACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAACCACCCACACCAAGGCCC
65 AACCGCCCACACCAGGGGACATCTGCT--CGATGGTGGTC-AGGTAATCGCCCGCACCAAGACCC
13765556 AGCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGACATCTT
127 AGCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGACATCTT
* *** * *
13765606 GTGCCGATGGTGTCGAGGTAACCACCTGTACCAAGGGCCAGCTGGTGTCAATGGTGTTCGAGGCA
1 GTGCCGATGGTGTCGAGGTAACCACCTGCACCAAGGGCCAGCACATGCCAATGGCGTTCGAGGCA
* * * *
13765671 ACCGCCCACACCAAGGCTTGACATGTGCT-GATGGTGGTCAAGGTAATCGCCCGTACCACGACCC
66 ACCGCCCACACC-AGG--GGACATCTGCTCGATGGTGGTC-AGGTAATCGCCCGCACCAAGACCC
** *
13765735 AGCATGTGCCGATGGTGTTCGATGCAACCGCCCTTACCAGGGGTCATCTT
127 AGCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGACATCTT
* * * *
13765785 GTGCCGATAGTGGTCGAGGCAATCGCCTGCACCAAGGGCC
1 GTGCCGATGGT-GTCGAGGTAACCACCTGCACCAAGGGCC
13765825 GACTTGTACC
Statistics
Matches: 335, Mismatches: 58, Indels: 10
0.83 0.14 0.02
Matches are distributed among these distances:
178 95 0.28
179 135 0.40
180 98 0.29
182 7 0.02
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (176 bp):
GTGCCGATGGTGTCGAGGTAACCACCTGCACCAAGGGCCAGCACATGCCAATGGCGTTCGAGGCA
ACCGCCCACACCAGGGGACATCTGCTCGATGGTGGTCAGGTAATCGCCCGCACCAAGACCCAGCA
TGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGACATCTT
Found at i:13767244 original size:158 final size:160
Alignment explanation
Indices: 13766798--13767261 Score: 521
Period size: 159 Copynumber: 2.9 Consensus size: 160
13766788 TAACACGCAG
* * *
13766798 GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTC-TCTGGCCAGCTGAGTGCCCGTACGC
1 GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTTC-GGCCAGCTGAGTGCCCGCACGC
*
13766862 CCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAG
65 TCGTTTCGTGGGTTGGCTTAGGCATACGAGAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAG
* * * *
13766926 GGTTGTGGCAGCGGGATTGACAGCACATAGA
130 GGTTGCGACAGCAGGATCGACAGCACATAGA
* * * * * *
13766957 GGGGGA-TCAGGTCGATCCTCAACTTGCGCATTATACCTCTTCGGCCAGCTCAGTGCCCGCACGC
1 GGGGGACT-GGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCAGCTGAGTGCCCGCACGC
* ** * * * *
13767021 TCATTTCAAGGGTTGACTTAGGCATAC-AGAGTTCAATCCCA-GTCTAAG-ATCAGACCAAACCG
65 TCGTTTCGTGGGTTGGCTTAGGCATACGAGAGTTC-ATTCCATGTCTAAGCCTCAG-CCAGACCG
* *
13767083 AGGGTTGCGATAGCAGGATCGACAGCACGTA-A
128 AGGGTTGCGACAGCAGGATCGACAGCACATAGA
* * * * **
13767115 GGGGGACTGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGACCGGCTGAGCACCCGCACGCT
1 GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCAGCTGAGTGCCCGCACGCT
* * *
13767180 CGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGAGAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGG
* * *
13767244 GTTGTGGCAGCAAGATCG
131 GTTGCGACAGCAGGATCG
13767262 GTAGCGGGAT
Statistics
Matches: 247, Mismatches: 49, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 112 0.45
159 123 0.50
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (160 bp):
GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCAGCTGAGTGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGAGAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGG
GTTGCGACAGCAGGATCGACAGCACATAGA
Found at i:13767414 original size:26 final size:26
Alignment explanation
Indices: 13767384--13767436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13767374 GTTTACTTAG
* *
13767384 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13767410 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13767436 G
1 G
13767437 AATGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13777832 original size:25 final size:25
Alignment explanation
Indices: 13777803--13777850 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
13777793 GTTGACTTAG
13777803 GCATACGGAGTTCA-TCCCTAGTCAA
1 GCATACGGAGTTCATTCCC-AGTCAA
*
13777828 GCATATGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
13777851 TAAGATCAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:13778121 original size:159 final size:157
Alignment explanation
Indices: 13777957--13778330 Score: 405
Period size: 159 Copynumber: 2.4 Consensus size: 157
13777947 TGGTTGAGCG
*
13777957 CCCGCATGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATTCCCAGC
1 CCCGCATGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATT-CCA-C
* * * * * *
13778021 CAGATCGAGGGTTGTGGCAGC-GAGATCGGTAGCACACAAAGGGGGACCGAACCGATCCTCGGCT
63 CAGACCGAGGGTTGTGACAGCAG-GATCGATAGCACACAAAGGGGGACCGAACAGATCCCCGACT
**
13778085 TGTGCATTATGCCTCTTCAGCTAG-CTCAGCA
127 TACGCATTATGCCTCTTC-GCTAGACTCAGCA
* * * * **
13778116 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAGGATTGGAC
1 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA--ATTCCAC
* ** * *
13778180 CAGACCGAGGGTTGTGACAGCAGGATCGATAGCACTCAGGGGGGGACTGGACAGATCCCCGACTT
63 CAGACCGAGGGTTGTGACAGCAGGATCGATAGCACACAAAGGGGGACCGAACAGATCCCCGACTT
* * * * **
13778245 ACGCATTCTGCCTCTTCGGTCGACTGAGTG
128 ACGCATTATGCCTCTTCGCTAGACTCAGCA
*
13778275 CCCGCATGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13778331 GCATACGAAG
Statistics
Matches: 177, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 1 0.01
158 6 0.03
159 161 0.91
160 6 0.03
161 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATTCCACCAG
ACCGAGGGTTGTGACAGCAGGATCGATAGCACACAAAGGGGGACCGAACAGATCCCCGACTTACG
CATTATGCCTCTTCGCTAGACTCAGCA
Found at i:13786447 original size:45 final size:45
Alignment explanation
Indices: 13786353--13786447 Score: 100
Period size: 45 Copynumber: 2.1 Consensus size: 45
13786343 CATGTGGCCG
* * * * * **
13786353 CACCAAGGGCCAGCGCGTGTCGATGGTGGTCGATCCGACTGCCTG
1 CACCAAGGGCCAGCACGTGCCGATGGTGGTCGAGCCAACCGCCCA
* * *
13786398 CACCAAGGGTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCA
1 CACCAAGGGCCAGCACGTGCCGATGGTGGTCGAGCCAACCGCCCA
13786443 CACCA
1 CACCA
13786448 GATCGAGGCA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.20, C:0.33, G:0.33, T:0.15
Consensus pattern (45 bp):
CACCAAGGGCCAGCACGTGCCGATGGTGGTCGAGCCAACCGCCCA
Found at i:13786714 original size:45 final size:45
Alignment explanation
Indices: 13786481--13788133 Score: 876
Period size: 45 Copynumber: 36.8 Consensus size: 45
13786471 AGGCCCGACA
* ** *
13786481 TGTGCCGATGGTGGTCGA-GTAAGAGCCCGCACCAAAGGCCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * ** * * * * *
13786525 TATGTCGGTGGTGCCCGAGGTAACCGCCCACACCGAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * * *
13786570 TTTACCGATGGTGGTCCAGGCAACCGCCCCCAAC-AAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGG-CCAGCT
* * * * * ** *
13786615 CGTGCTGATGGTGTTCGAGGCAATCGCCCGCACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * ** * *
13786660 TTTGTCGATGGTGGTCGAGGCAAGAGCCCACACCAAAGGCCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * ** ** * * *
13786705 TGTGCCGATGGTGCTCAAGGTAAATGCCCATA-CGAAGGCCTACCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCC-AGCT
* * * * * * *
13786750 CGTGCCAATGGTGTTCGAGGTAACTGCCCGCACCGAAGCCCAG-T
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * *
13786794 ATGTGCCGATGGTGGTCGACGCAATCGCTCGCACC-AAGGCCTAGCA
1 -TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCC-AGCT
* * * * * ** *
13786840 TGTGCCGATGGTGTTCGACGTAACCGTCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * * * *
13786885 TGGGTCGATGGTAGTCCACGCAACCGCCCGCACC-AAGGATCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGG-CCAGCT
** * * ** **
13786930 TGTGTGGATGGTGGTTC-AGGTAACCACCCGCACCAGGGGCCATTT
1 TGTGCCGATGGTGG-TCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * * * *
13786975 TCTACCGATGGTGGTCAAGGCAACCGCCCGTACCAAAGACTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* *
13787020 CGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGG-CCAGCT
* * * * * ** *
13787065 TGGGCCGATGGTGTTTGACGCAACTGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * * *
13787110 TGTGCCAATGGTGGTTGAGGTAACCACCCGCACCAAGGGTC-GTCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAG-CT
* * * * * *
13787155 TGTGCCGATGATGGTCAAGGCAACCGCCCTCACCAAGGGTCAACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * ** **
13787200 TGTGCAGATGGTGGTCGAGGCAACTGCCTGCACCAGGGGCCATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * ** *
13787245 TCTGCAGATGGTGGTTGAGACAAGAGCCCGCACC-AAGAGCCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAG-GCCAGCT
* * * * * *
13787290 TATGTCGATGGTGGTTGAGGCAACTGCCCGCACCAGAGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * ** ** *
13787335 TCTGCCAATGGTGGTCGAGGTAACTGCCTACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * *
13787380 TCTGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGG-CCAGCT
* * ** * * **
13787425 TGTGCCGATGGTGGTTGAGGTAAGAGCCCGCACTAAGGGTTAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * ** *
13787470 TGTACCGATGGTGCTCGAGGCAACCGCCCCCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * ** *
13787515 TCTACCGATGGTGGTCGAGGTAACCGCCTACACC-AAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGG-CCAGCT
* * ** * * *
13787560 TGTACCGATGGTGGTCGAGGCAACAGCCTACAGCAAGGGCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * ** *
13787605 TGTACCGATGGTGTTCGACGTAACCGCCCGCACCAGTGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * * *
13787650 TGTGCTGATGGTGGTCGAGGTAACCGCCCGTACCAAGGGTCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * * *
13787695 AGTGCCGATGGTGCTCGAGGCAACCACTCGTACC-AAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGG-CCAGCT
* * * * * ** * *
13787740 CGTGCCGATGGTGTTCGAGGCAACCTCCTGCACTAGGGGTCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * *
13787785 TCTACCGATGGTGGTCGACGCAACCGCCCGCACC-AAGGCCCCGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGG-CCAGCT
* * * * * ** *
13787830 TGTGCCGATGGTGTTCGACGTAGCCGCCCGCACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * *
13787875 TGTGTCGATGGTGGTTGAGGTAACCCCCCGCACCAAGGGCC-GACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAG-CT
* * * * * *
13787920 GGTGCCGATGGTGTTCGAGGCAATCGCCCACACC-AAGGCTCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGC-CAGCT
* ** *** ** *
13787965 TGTGTCGATAATGGTCGAGGCAACCGCCTATACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * * *
13788010 TGTGCCGATGGTGGTCGAGGCAATCGTCCGTACCAAGGGTC-GACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAG-CT
* * * *
13788055 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGTCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
* * * *
13788099 TGTGTCGATGGTGATCGAGGCAACCACCCCCACCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
13788134 GGGCCCAGCT
Statistics
Matches: 1203, Mismatches: 372, Indels: 67
0.73 0.23 0.04
Matches are distributed among these distances:
44 86 0.07
45 1082 0.90
46 35 0.03
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAGCT
Found at i:13787048 original size:135 final size:136
Alignment explanation
Indices: 13786479--13788144 Score: 1069
Period size: 135 Copynumber: 12.4 Consensus size: 136
13786469 CAAGGCCCGA
* ** * * * * * **
13786479 CATGTGCCGATGGTGGTCGA-GTAAGAGCCCGCACCAAAGGCCGGCTTATGTCGGTGGT-GCCCG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
* * * * * * *
13786542 AGGTAACCGCCCACACC-GAGGGCCATCTTTTACCGATGGTGGTCCAGGCAACCGCCCCCAACAA
66 AGGCAACCGCCCGCACCAG-GGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
*
13786606 GGCCCAG
130 AGCCCAG
* * * * * * * * *
13786613 CACGTGCTGATGGTGTTCGAGGCAATCGCCCGCACTAGGGGCCATCTTTTGTCGATGGTGG-TCG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
** * ** ** * * * * ** ** * *
13786677 AGGCAAGAGCCCACACCAAAGGCCGGCTTGTGCCGATGGTGCTCAAGGTAAATGCCCATACGAAG
66 AGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAA
* *
13786742 GCCTAC
131 GCCCAG
* * * * * *
13786748 CACGTGCCAATGGTGTTCGAGGTAACTGCCCGCACCGAA-GCCCAG-TATGTGCCGATGGTGG-T
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGGCCAGCT-TGTGCCGATGGTGGTT
* * * * * * * * * * * *
13786810 CGACGCAATCGCTCGCACCA-AGGCCTAGCATGTGCCGATGGTGTTCGACGTAACCGTCTGCACC
64 CGAGGCAACCGCCCGCACCAGGGGCC-ATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACC
** * *
13786874 AGGGGCCAT
128 AAAGCCCAG
* * * * * * ** * **
13786883 CTTGGGTCGATGGTAGTCCACGCAACCGCCCGCACCAAGGATCGGCTTGTGTGGATGGTGGTTC-
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
* * * * * *
13786947 AGGTAACCACCCGCACCAGGGGCCATTTTCTACCGATGGTGGTCAAGGCAACCGCCCGTACCAAA
66 AGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAA
* *
13787012 GACTAG
131 GCCCAG
* * * * *
13787018 CACGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGGGCCGATGGT-GTTTG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
* * * * * * * *
13787082 ACGCAACTGCCCGCACCAGGGGCCATCTTGTGCCAATGGTGGTTGAGGTAACCACCCGCACCAAG
66 AGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAA
**
13787147 GGTC-G
131 GCCCAG
* * * * * * *
13787152 TCTTGTGCCGATGATGGTCAAGGCAACCGCCCTCACCAAGGGTCAACTTGTGCAGATGGTGG-TC
1 -CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTC
* * * * * * **
13787216 GAGGCAACTGCCTGCACCAGGGGCCATTTTCTGCAGATGGTGGTTGAGACAAGAGCCCGCACCAA
65 GAGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
*
13787281 GAG-CCGG
130 -AGCCCAG
* * * * * * * *
13787288 CTTATGTCGATGGTGGTTGAGGCAACTGCCCGCACC-AGAGGCCATCTTCTGCCAATGGTGG-TC
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTTC
* * ** *
13787351 GAGGTAACTGCCTACACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAA
65 GAGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
*
13787416 GGCCCAG
130 AGCCCAG
* * ** * ** * *
13787423 CATGTGCCGATGGTGGTTGAGGTAAGAGCCCGCACTAAGGGTTAGCTTGTACCGATGGT-GCTCG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
* * * ** *
13787487 AGGCAACCGCCCCCACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAACCGCCTACACCAAG
66 AGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAA
13787552 GCCCAG
131 GCCCAG
* * ** * * *
13787558 CATGTACCGATGGTGGTCGAGGCAACAGCCTACAGCAAGGGCCAGCATGTACCGATGGT-GTTCG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
* * * * * * * *
13787622 ACGTAACCGCCCGCACCAGTGGCCATCTTGTGCTGATGGTGGTCGAGGTAACCGCCCGTACCAAG
66 AGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAA
** *
13787687 GGTCGG
131 GCCCAG
* * * * * **
13787693 C-TAGTGCCGATGGTGCTCGAGGCAACCACTCGTACCAAGGCCCAGCACGTGCCGATGGT-GTTC
1 CAT-GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTC
* * * * * *
13787756 GAGGCAACCTCCTGCACTAGGGGTCATCTTCTACCGATGGTGGTCGACGCAACCGCCCGCACCAA
65 GAGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* *
13787821 GGCCCCG
130 AGCCCAG
* * * * * * * *
13787828 CATGTGCCGATGGTGTTCGACGTAGCCGCCCGCACTAGGGGCCATCTTGTGTCGATGGTGGTT-G
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
* * * ** * * *
13787892 AGGTAACCCCCCGCACCAAGGGCCGA-CTGGTGCCGATGGTGTTCGAGGCAATCGCCCACACCAA
66 AGGCAACCGCCCGCACCAGGGGCC-ATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * *
13787956 GGCTCGG
130 AGCCCAG
* ** *** * *
13787963 CATGTGTCGATAATGGTCGAGGCAACCGCCTATACCAGGGGCCATCTTGTGCCGATGGTGG-TCG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
* * * * * * *
13788027 AGGCAATCGTCCGTACCAAGGGTCGA-CTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACC-A
66 AGGCAACCGCCCGCACC-AGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
** *
13788090 AGGTCGG
130 AGCCCAG
* * * *
13788097 CATGTGTCGATGGTGATCGAGGCAACCACCCCCACC-AGGGCCCAGCTT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAGCTT
13788145 ACTCTTTGAG
Statistics
Matches: 1181, Mismatches: 325, Indels: 52
0.76 0.21 0.03
Matches are distributed among these distances:
133 3 0.00
134 76 0.06
135 1079 0.91
136 23 0.02
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.18
Consensus pattern (136 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTTCG
AGGCAACCGCCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAA
GCCCAG
Found at i:13787073 original size:90 final size:90
Alignment explanation
Indices: 13786481--13788144 Score: 1061
Period size: 90 Copynumber: 18.5 Consensus size: 90
13786471 AGGCCCGACA
* ** * * * * * **
13786481 TGTGCCGATGGTGGTCGA-GTAAGAGCCCGCACCAAAGGCCGGCTTATGTCGGTGGTGCCCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* * * *
13786545 TAACCGCCCACACCGAGGGCCATCT
66 CAACCGCCCGCACCAAGGGCCAGCT
* * * * * * ** * *
13786570 TTTACCGATGGTGGTCCAGGCAACCGCCCCCAACAAGGCCCAGCACGTGCTGATGGTGTTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* * * *
13786635 CAATCGCCCGCACTAGGGGCCATCT
66 CAACCGCCCGCACCAAGGGCCAGCT
* * ** * * * * *
13786660 TTTGTCGATGGTGGTCGAGGCAAGAGCCCACACCAAAGGCCGGCTTGTGCCGATGGTGCTCAAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* ** ** * * *
13786725 TAAATGCCCATACGAA-GGCCTACCA
66 CAACCGCCCGCACCAAGGGCC-AGCT
* * * * * *
13786750 CGTGCCAATGGTGTTCGAGGTAACTGCCCGCACCGAA-GCCCAG-TATGTGCCGATGGTGGTCGA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGGCCAGCT-TGTGCCGATGGTGGTCGA
* * * *
13786813 CGCAATCGCTCGCACCAA-GGCCTAGCA
64 GGCAACCGCCCGCACCAAGGGCC-AGCT
* * * * * * * * * * * *
13786840 TGTGCCGATGGTGTTCGACGTAACCGTCTGCACCAGGGGCCATCTTGGGTCGATGGTAGTCCACG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
** *
13786905 CAACCGCCCGCACCAAGGATCGGCT
66 CAACCGCCCGCACCAAGGGCCAGCT
** * * * ** * * *
13786930 TGTGTGGATGGTGGTTC-AGGTAACCACCCGCACCAGGGGCCATTTTCTACCGATGGTGGTCAAG
1 TGTGCCGATGGTGG-TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAG
* * * * *
13786994 GCAACCGCCCGTACCAAAGACTAGCA
65 GCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13787020 CGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGGGCCGATGGTGTTTGACG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* * *
13787085 CAACTGCCCGCACCAGGGGCCATCT
66 CAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13787110 TGTGCCAATGGTGGTTGAGGTAACCACCCGCACCAAGGGTC-GTCTTGTGCCGATGATGGTCAAG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAG
* * *
13787174 GCAACCGCCCTCACCAAGGGTCAACT
65 GCAACCGCCCGCACCAAGGGCCAGCT
* * * * ** * * * *
13787200 TGTGCAGATGGTGGTCGAGGCAACTGCCTGCACCAGGGGCCATTTTCTGCAGATGGTGGTTGAGA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
** * *
13787265 CAAGAGCCCGCACCAAGAGCCGGCT
66 CAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13787290 TATGTCGATGGTGGTTGAGGCAACTGCCCGCACC-AGAGGCCATCTTCTGCCAATGGTGGTCGAG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGCCGATGGTGGTCGAG
* * ** * *
13787354 GTAACTGCCTACACCAGGGGCCATCT
65 GCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13787380 TCTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGGTTGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* ** * **
13787445 TAAGAGCCCGCACTAAGGGTTAGCT
66 CAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13787470 TGTACCGATGGTGCTCGAGGCAACCGCCCCCACCAGGGGCCATCTTCTACCGATGGTGGTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* ** * *
13787535 TAACCGCCTACACCAAGGCCCAGCA
66 CAACCGCCCGCACCAAGGGCCAGCT
* * ** * * * * *
13787560 TGTACCGATGGTGGTCGAGGCAACAGCCTACAGCAAGGGCCAGCATGTACCGATGGTGTTCGACG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* *
13787625 TAACCGCCCGCACC-AGTGGCCATCT
66 CAACCGCCCGCACCAAG-GGCCAGCT
* * * * * * *
13787650 TGTGCTGATGGTGGTCGAGGTAACCGCCCGTACCAAGGGTCGGCTAGTGCCGATGGTGCTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* * * * *
13787715 CAACCACTCGTACCAAGGCCCAGCA
66 CAACCGCCCGCACCAAGGGCCAGCT
* * * * * * * * * * *
13787740 CGTGCCGATGGTGTTCGAGGCAACCTCCTGCACTAGGGGTCATCTTCTACCGATGGTGGTCGACG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* * *
13787805 CAACCGCCCGCACCAAGGCCCCGCA
66 CAACCGCCCGCACCAAGGGCCAGCT
* * * * * * * * *
13787830 TGTGCCGATGGTGTTCGACGTAGCCGCCCGCACTAGGGGCCATCTTGTGTCGATGGTGGTTGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* *
13787895 TAACCCCCCGCACCAAGGGCC-GACT
66 CAACCGCCCGCACCAAGGGCCAG-CT
* * * * * * * **
13787920 GGTGCCGATGGTGTTCGAGGCAATCGCCCACACCAA-GGCTCGGCATGTGTCGATAATGGTCGAG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAG
*** * *
13787984 GCAACCGCCTATACCAGGGGCCATCT
65 GCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13788010 TGTGCCGATGGTGGTCGAGGCAATCGTCCGTACCAAGGGTC-GACTTGTGTCGATGGTGGTCGAG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAG
* * *
13788074 GCAACCGCCCGCACCAA-GGTCGGCA
65 GCAACCGCCCGCACCAAGGGCCAGCT
* * * *
13788099 TGTGTCGATGGTGATCGAGGCAACCACCCCCACC-AGGGCCCAGCTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAGCTT
13788145 ACTCTTTGAG
Statistics
Matches: 1195, Mismatches: 358, Indels: 44
0.75 0.22 0.03
Matches are distributed among these distances:
88 4 0.00
89 67 0.06
90 1111 0.93
91 13 0.01
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
CAACCGCCCGCACCAAGGGCCAGCT
Found at i:13789524 original size:45 final size:45
Alignment explanation
Indices: 13789453--13789562 Score: 143
Period size: 45 Copynumber: 2.4 Consensus size: 45
13789443 GGTGAGTAGA
* * * *
13789453 TGCCGATGGTGGTTGGGGCATGTGCCCGTACCAAGGGCTAGCGA-G
1 TGCCGATGGTGGTCGAGGCATGTGCCCGCACCAAGGGCCAGC-ATG
*
13789498 TGCCGATGGTGGTCGATGCGAT-TGCCCGCACCAAGGGCCAGCATG
1 TGCCGATGGTGGTCGAGGC-ATGTGCCCGCACCAAGGGCCAGCATG
13789543 TGCCGATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCGAGGCA
13789563 ACCGCCCGTA
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 2 0.04
45 53 0.93
46 2 0.04
ACGTcount: A:0.16, C:0.25, G:0.40, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCATGTGCCCGCACCAAGGGCCAGCATG
Found at i:13789570 original size:45 final size:45
Alignment explanation
Indices: 13789453--13789575 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 45
13789443 GGTGAGTAGA
* * ** *
13789453 TGCCGATGGTGGTTGGGGCATGTGCCCGTACCAAGGGCTAGCGAG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGTACCAAGGGCCAGCGAG
* * * *
13789498 TGCCGATGGTGGTCGATGCGATTGCCCGCACCAAGGGCCAGC-ATG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGTACCAAGGGCCAGCGA-G
*
13789543 TGCCGATGGTGGTCGAGGCAACCGCCCGTACCA
1 TGCCGATGGTGGTCGAGGCAACTGCCCGTACCA
13789576 GATCGAGGCA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.02
45 63 0.98
ACGTcount: A:0.17, C:0.28, G:0.37, T:0.18
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACTGCCCGTACCAAGGGCCAGCGAG
Found at i:13789643 original size:45 final size:45
Alignment explanation
Indices: 13789594--13790340 Score: 487
Period size: 45 Copynumber: 16.6 Consensus size: 45
13789584 CATGTGCCTA
* * *
13789594 CACCAAGGCCC-GACATATGCCGATGGTGTTCGAGGTAACCGCCCA
1 CACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * * * * ***
13789639 CACCAGGGGCCATCTTCTACCGATGGTGGTCGAGGTAAGAACCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * *
13789684 CACCAAGGGCCAGCTTATGCTGATGGTGCTGGAGGCAACCGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
** * * *
13789729 CACCAAGGCCTGGCACGTGCCGATGGTGTTTGAGGACAACCGCTCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGG-CAACCGCCCG
* * * * * * *
13789775 CACTAGGGACCAGCATGTACCGATGGTGTTCGAGGTAACCACCCA
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * * ** *
13789820 CACCAGGGGCCA-TATTCTACCGATGGTGGTCGAGGCAAGAGCTCG
1 CACCAAGGCCCAGCA-TGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * *
13789865 CACCAAGGGCCAGCTTATGTCGATGGTGCTCGAGGCAACCACCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * **
13789910 TACAAAGGCCTAGCATGTGCCGATGGTGTTCGAGGCAATCGGTCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * **
13789955 CACCGAGGCCCAGCATGTGCTGATGGTGGTCGAGACAATTGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * *
13790000 TACCAAGGCCCAGCATGTGCCGATGGTGTTCGACGTAACCGCCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * *** * *
13790045 CACCAGGGGCCATCTTGTTTTGATGGTGGTCGAGGCAACCACCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * *
13790090 TACCAAGTG-TCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG
1 CACCAAG-GCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * *
13790135 CACCATGGCCCAGTATGTGCCGATGGTGTTCGATGCAACCACCCC
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * * *
13790180 CACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATCACCCG
1 CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * ** * * * *
13790225 TACCAGGGGTC-GACTTGTGCCGATGGTGGTCGAGGCAACTGCTCG
1 CACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * *
13790270 CACCAAGGGCC-GACATGTGCTGATGGTGATCGAGGCAATCGCCCG
1 CACCAAGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * *
13790315 TACCACGGCCCAGCTTGTGCCGATGG
1 CACCAAGGCCCAGCATGTGCCGATGG
13790341 CGGTCAAGGC
Statistics
Matches: 538, Mismatches: 156, Indels: 16
0.76 0.22 0.02
Matches are distributed among these distances:
44 2 0.00
45 498 0.93
46 38 0.07
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
CACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
Found at i:13790360 original size:135 final size:136
Alignment explanation
Indices: 13789594--13790392 Score: 603
Period size: 135 Copynumber: 5.9 Consensus size: 136
13789584 CATGTGCCTA
* * * * * * *
13789594 CACCAA-GGCCC-GACATATGCCGATGGTGTTCGAGGTAACCGCCCACACCAGGGGCCATCTTCT
1 CACCAAGGGCCCAG-CATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGT
* * ** * * * * * * *
13789657 ACCGATGGTGGTCGAGGTAAGAACCCGCACCAAGGGCCAGCTTATGCTGATGGTGCTGGAGGCAA
65 GCCGATGGTGGTCGAGGCAATCACCCGTACCAGGGGTCAGCTTGTGCCGATGGTGGTCGAGGCAA
*
13789722 CCGCCCG
130 CTGCCCG
** * * * * * * *
13789729 CACCAA-GGCCTGGCACGTGCCGATGGTGTTTGAGGACAACCGCTCGCACTAGGGACCAGCATGT
1 CACCAAGGGCCCAGCATGTGCCGATGGTGTTCGAGG-CAACCACCCGCACCAGGGCCCAGCTTGT
* * * * ** * ** * *
13789793 ACCGATGGTGTTCGAGGTAACCACCCACACCAGGGGCCATATTCTACCGATGGTGGTCGAGGCAA
65 GCCGATGGTGGTCGAGGCAATCACCCGTACCAGGGGTCAGCTTGTGCCGATGGTGGTCGAGGCAA
** *
13789858 GAGCTCG
130 CTGCCCG
* * * * * * * * *
13789865 CACCAAGGG-CCAGCTTATGTCGATGGTGCTCGAGGCAACCACCCGTACAAAGGCCTAGCATGTG
1 CACCAAGGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTG
* *** * ** * * *
13789929 CCGATGGTGTTCGAGGCAATCGGTCGCACC-GAGGCCCAGCATGTGCTGATGGTGGTCGAGACAA
66 CCGATGGTGGTCGAGGCAATCACCCGTACCAG-GGGTCAGCTTGTGCCGATGGTGGTCGAGGCAA
*
13789993 TTGCCCG
130 CTGCCCG
* * * * * * *
13790000 TACCAA-GGCCCAGCATGTGCCGATGGTGTTCGACGTAACCGCCCGCACCAGGGGCCATCTTGTT
1 CACCAAGGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTG
** * * *
13790064 TTGATGGTGGTCGAGGCAACCACCCGTACCAAGTGTCAGCTTGTGCCGATGGTGGTCGAGGCAAC
66 CCGATGGTGGTCGAGGCAATCACCCGTACCAGGGGTCAGCTTGTGCCGATGGTGGTCGAGGCAAC
*
13790129 CGCCCG
131 TGCCCG
* * * * * *
13790135 CACC-ATGGCCCAGTATGTGCCGATGGTGTTCGATGCAACCACCCCCACCAGGGGCCATCTTGTG
1 CACCAAGGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTG
13790199 CCGATGGTGGTCGAGGCAATCACCCGTACCAGGGGTC-GACTTGTGCCGATGGTGGTCGAGGCAA
66 CCGATGGTGGTCGAGGCAATCACCCGTACCAGGGGTCAG-CTTGTGCCGATGGTGGTCGAGGCAA
*
13790263 CTGCTCG
130 CTGCCCG
* * * * * * *
13790270 CACCAAGGGCCGA-CATGTGCTGATGGTGATCGAGGCAATCGCCCGTACCACGGCCCAGCTTGTG
1 CACCAAGGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTG
* * * * * * *
13790334 CCGATGGCGGTCAAGGCAAGT-GCCCGTACCAAAGGG-CAGCCTGTGTCGATGATGGTCGA
66 CCGATGGTGGTCGAGGCAA-TCACCCGTACC-AGGGGTCAGCTTGTGCCGATGGTGGTCGA
13790393 TACATGTGCC
Statistics
Matches: 525, Mismatches: 127, Indels: 24
0.78 0.19 0.04
Matches are distributed among these distances:
134 5 0.01
135 404 0.77
136 114 0.22
137 2 0.00
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.18
Consensus pattern (136 bp):
CACCAAGGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTG
CCGATGGTGGTCGAGGCAATCACCCGTACCAGGGGTCAGCTTGTGCCGATGGTGGTCGAGGCAAC
TGCCCG
Found at i:13791154 original size:26 final size:26
Alignment explanation
Indices: 13791125--13791177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13791115 GTTGACTTAG
13791125 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
13791151 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13791177 G
1 G
13791178 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13791389 original size:159 final size:159
Alignment explanation
Indices: 13791215--13791971 Score: 629
Period size: 159 Copynumber: 4.8 Consensus size: 159
13791205 TAGGATCAGT
* * * *
13791215 AGCACGTAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCG
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * *
13791280 CCCGCATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
**
13791345 GAACCGAGGGTTGTGGTAGTGGGACCGAC
131 GAACCGAGGGTTGTGGTAGCAGGACCGAC
* *** ** * * * * * * *
13791374 AGCACGCAGAAGGGGACCAAACCGATCCCCAACTTGCGTATTATGCCTCTTCGATCGGCTCAACA
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * ** *
13791439 CCTGTACGCTCAT-TTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCG
66 CCCGCACGC-C-TGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA
* * * * * * *
13791500 GATCGGACTGAGGGTTGCGATAACAGGATCGAC
128 G-CCGAACCGAGGGTTGTGGTAGCAGGACCGAC
** * ** * *
13791533 AGCACGCAG-GGGGGACCGGGTTGATCCCTGGCTTGTACATTCTGCCTCTCCGACCTGTTGAGCG
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* ** *
13791597 CCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
66 CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *
13791662 -AGATCGAGGGTTGTGGCAGCAGGACCG-G
131 GA-ACCGAGGGTTGTGGTAGCAGGACCGAC
* ** * * * * * * * *
13791690 TGCACATAGAGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTTTTCGGCCGACTCAGCG
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * **
13791755 CCCGCAC-ACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAA
66 CCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCCCA
* * * *
13791818 G-CGGACCGAGGGTTGTGGTCGCAAGATCGAC
128 GCCGAACCGAGGGTTGTGGTAGCAGGACCGAC
* * * * * * * *
13791849 AGCACGCAGGGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGTCTCTCC-AGTCGACTGAGT
1 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGC
*
13791913 GCCCGCACG-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GCCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13791972 ATACGGAGTT
Statistics
Matches: 451, Mismatches: 129, Indels: 37
0.73 0.21 0.06
Matches are distributed among these distances:
157 15 0.03
158 205 0.45
159 222 0.49
160 8 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
GAACCGAGGGTTGTGGTAGCAGGACCGAC
Found at i:13791864 original size:317 final size:318
Alignment explanation
Indices: 13791151--13791971 Score: 938
Period size: 317 Copynumber: 2.6 Consensus size: 318
13791141 CCCAGTCTAA
* ** * ** *
13791151 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTAC-AGTAGTAGGATC-A
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAAGC-GGACCGAGGGTTGCGA-TAACAAGATCGA
* * * * *
13791213 GTAGCACGTAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAG
64 -CAGCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCTGTTGAG
* *
13791278 CGCCCGCATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
128 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* ** *
13791343 CCGAACCGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAAGGGGACCAAACCGATCCCCAACT
193 CCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCAAACCGATCCCCAACT
* * * * * *
13791408 TGCGTATTATGCCTCTTCGATCGGCTCAACACCTGTACGCTCATTTTGTGGGTTGACTTAG
258 TGCGCATTATGCCTCTTCGACCGACTCAACACCCGCACACTCATTTTGTGGGTTGACTTAG
** * * *
13791469 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGATAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAAGCGGACCGAGGGTTGCGATAACAAGATCGACA
* * **
13791534 GCACGCA-GGGGGGACCGGGTTGATCCCTGGCTTGTACATTCTGCCTCTCCGACCTGTTGAGCGC
66 GCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCTGTTGAGCGC
* * *
13791598 CCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-
131 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* ** * * **** * **
13791662 AGATCGAGGGTTGTGGCAGCAGGACCG-GTGCACATAGAGGGGGACTGGGCCGATCCTCGGCTTG
196 A-ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCAAACCGATCCCCAACTTG
* * * * *
13791726 CGCATTATGCCTTTTCGGCCGACTCAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAG
260 CGCATTATGCCTCTTCGACCGACTCAACACCCGCACACTCATTTTGTGGGTTGACTTAG
* * * **
13791785 GCATACGGAGTTCATTCCTAGTCTAAGATCAAAGCGGACCGAGGGTTGTGGTCGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAAGCGGACCGAGGGTTGCGATAACAAGATCGACA
* * * * * *
13791850 GCACGCAGGGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGTCTCTCC-A-GTCGACTGAGT
66 GCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCT-G-TTGAGC
* *
13791913 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13791972 ATACGGAGTT
Statistics
Matches: 425, Mismatches: 71, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
315 1 0.00
316 138 0.32
317 224 0.53
318 59 0.14
319 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (318 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAAGCGGACCGAGGGTTGCGATAACAAGATCGACA
GCACGCAGGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCTGTTGAGCGC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
AACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGAAGGGGACCAAACCGATCCCCAACTTGC
GCATTATGCCTCTTCGACCGACTCAACACCCGCACACTCATTTTGTGGGTTGACTTAG
Found at i:13791974 original size:26 final size:26
Alignment explanation
Indices: 13791944--13791996 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13791934 GTTGGCTTAG
13791944 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
13791970 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
13791996 G
1 G
13791997 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:13792360 original size:26 final size:26
Alignment explanation
Indices: 13792331--13792380 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13792321 TAGGCATACG
*
13792331 GAGTTGATTCCAAGTCTAAGCATAGA
1 GAGTTCATTCCAAGTCTAAGCATAGA
*
13792357 GAGTTCATTCCCAGTCTAAGCATA
1 GAGTTCATTCCAAGTCTAAGCATA
13792381 CGTTGGCACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (26 bp):
GAGTTCATTCCAAGTCTAAGCATAGA
Found at i:13793685 original size:45 final size:45
Alignment explanation
Indices: 13793634--13793740 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
13793624 TGAGCAGGTG
* *
13793634 CCGATGGTGGTTGGGGC-ATGTGC-CTGCACCAAGGGCCAGCGCGTA
1 CCGATGGTGGTCGAGGCGA-GTGCTC-GCACCAAGGGCCAGCGCGTA
* * *
13793679 CCGATGGTGGTCGATGCGAGTGCTCGCACCAAGGGCCAGCGTGTG
1 CCGATGGTGGTCGAGGCGAGTGCTCGCACCAAGGGCCAGCGCGTA
*
13793724 CCGATGGTGGTCAAGGC
1 CCGATGGTGGTCGAGGC
13793741 AATCACCCGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 51 0.96
46 2 0.04
ACGTcount: A:0.16, C:0.26, G:0.40, T:0.18
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCGAGTGCTCGCACCAAGGGCCAGCGCGTA
Found at i:13793887 original size:45 final size:45
Alignment explanation
Indices: 13793794--13795203 Score: 862
Period size: 45 Copynumber: 31.4 Consensus size: 45
13793784 GCATGTGAAA
* * * * * *
13793794 ATGGTGTTTGAGGTAACCGCCCACACCAA-GGCCATCTTCTACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
** *
13793838 ATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGA-CTTGTACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-ATCTTGTGCCG
* * *
13793883 ATGGTGCTCGAGGCAACCGCTCC-CACCAAGGGCCATCTTCTGTCG
1 ATGGTGGTCGAGGCAACCGC-CCGCACCAAGGGCCATCTTGTGCCG
* * * * ** *
13793928 ATGGTGGTCGAGGCAATCGCCCGTA-CAAAGGCGCAGCACGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CATCTTGTGCCG
* * * *
13793973 ATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCATCTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
** * *** *
13794018 ATGGTGGTCGAGGCAAGAGCCCACACCATA-GGCTGGCTTGTGCCT
1 ATGGTGGTCGAGGCAACCGCCCGCACCA-AGGGCCATCTTGTGCCG
* * * * * * ** *
13794063 ATGGTGCTCGAGGTAACCACCCGTACGAA-GGCCTAGCACGTGCTG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-ATCTTGTGCCG
* * * * * * * *
13794108 ATGGTGTTCGAGGCAACCGCTCGCACCGACGCCCAGCATGTACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * ** *
13794153 ATGGTGTTCGACGCAACCGTTCGCACC-AGAGGCCATCTTGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCATCTTGTGCCG
* * * * *
13794198 ATGGTGGTCGAGGCAACCACCCGCACCAGGGGCCATTTTCTACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
** * **
13794243 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGTTAGCTTGTGTAG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * * * * * * *
13794288 ATGCTGGTCGAGGTAACCGCTCGCACCAGGGGCCATTTTTTGTCA
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* ** ***** *
13794333 ATGGTGGTCGAGACAAGAGCCCGCACCAAGGGTTGGATTGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * *
13794378 ATGGTGGTCGAGGCAACCGCCCACACC-AGGGCCCATCTTCTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCATCTTGTGCCG
* * * *
13794423 ATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
** * * * * *
13794468 ATGGTGGTCGAGGCAAGAGCTCGAACCAAGGGTCAGCTTGTACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * * * **
13794513 ATGGTGCTTGAGACAACCGCCCGCACC-AGAGGCCATCTTATGTTG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCATCTTGTGCCG
* * *
13794558 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * * ** * * *
13794603 ATGGTGTTTGAGGCAATCGTTCTCACCAA-GGCCTAGCATGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-ATCTTGTGCCG
* ** * * *
13794648 ATGGTGTTCGACACAACTGCCC-CTACC-AGAGGCCATCTTCTACCG
1 ATGGTGGTCGAGGCAACCGCCCGC-ACCAAG-GGCCATCTTGTGCCG
* * *
13794693 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * * ** * * *
13794738 ATGGTGTTCG-GCACAATCGCCCATATCAGGGGCCATCTTGTGCCA
1 ATGGTGGTCGAG-GCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* ** * ** *
13794783 ATGGTGGTCGAGGCAACCACCCGCACGGAGGGTCGGCTAGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * * *
13794828 ATGGTGCTCGAGGCAACAGCCAGCACCAAGGCCTGGCA-CTTGT--CG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGG---GCCATCTTGTGCCG
* * * * * * *
13794873 ATGGTGTTCGAGGTAACCGTCTGCACCAAGGGTCATCTTCTACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * ** * *
13794918 ATGGTGGTCGAGGCAACCGCCCGCACTAAGGGTCGGCTGGTGCTG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * * * ** *
13794963 ATGGTGTTTGAGGCAACCGCGCACACCAA-GGCTCGGCATGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CATCTTGTGCCG
* * * *
13795008 ATGGTGGTCGAGGCAACCGCCTGCACCATGGCCCAGT-ATGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCA-TCTTGTGCCG
* * * * * * *
13795053 ATGGTGTTCGATGCAACTGCCCACACCAGGGGCCATCTTATGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
* * ** * * **
13795098 ATGGTGGTTGAGGCAATCGCCTACACCAAAGGTCGGCTTGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
** * *
13795143 ATGGTGGTCGAGGCAATTGCCCGCA-CTAGGGCCCAGT-TTATGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCA-TCTTGTGCCG
**
13795188 ATGGCAGTCGAGGCAA
1 ATGGTGGTCGAGGCAA
13795204 GTGCCCATAC
Statistics
Matches: 1032, Mismatches: 298, Indels: 71
0.74 0.21 0.05
Matches are distributed among these distances:
42 3 0.00
43 4 0.00
44 56 0.05
45 936 0.91
46 27 0.03
47 4 0.00
48 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGCCG
Found at i:13795230 original size:90 final size:90
Alignment explanation
Indices: 13795046--13795243 Score: 202
Period size: 90 Copynumber: 2.2 Consensus size: 90
13795036 TGGCCCAGTA
* * * * ** *
13795046 TGTGCCGATGGTGTTCGATGCAACTGCCCACACCAGGGGCCATCTTATGTCGATGGTGGTTGAGG
1 TGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAGGGCCCATCTTATGCCGATGGCAGTCGAGG
* * ** *
13795111 CAATCGCCTACACCAAAGGTCGGCT
66 CAATCGCCCACACCAAAGGGCAACC
* * *
13795136 TGTGCCGATGGTGGTCGAGGCAATTGCCCGCACTAGGGCCCAGT-TTATGCCGATGGCAGTCGAG
1 TGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAGGGCCCA-TCTTATGCCGATGGCAGTCGAG
*
13795200 GCAAGT-GCCCATACCAAAGGGCAACC
65 GCAA-TCGCCCACACCAAAGGGCAACC
* *
13795226 TGTGCTGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
13795244 TGCATGTGCC
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
90 86 0.98
91 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.22
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAGGGCCCATCTTATGCCGATGGCAGTCGAGG
CAATCGCCCACACCAAAGGGCAACC
Found at i:13796423 original size:160 final size:156
Alignment explanation
Indices: 13795966--13796466 Score: 521
Period size: 160 Copynumber: 3.2 Consensus size: 156
13795956 CCCAATCAAA
* *
13795966 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGAGAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTACG-GAGCAGGATCGAC
* * * *
13796030 AGCATGCAGGGGGTGATCGGGCCGATCCCTGGCTGGCGCATTCTGCCTCTCCGGTCGACTGAGCG
64 AGCA-GAAGGGGG-GACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
13796095 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
127 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
13796125 GCATAGGGAGTTCATTCCATGTCTAAGTCTCAGTC-GGACCGAGTGG-CAGCGGGACCAGCA--G
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGATCGAG-GGTTA-C-GGAGCAGGATCG
* * * ** *
13796186 TACAGCAGAA--GGGGACCGAGCCGATCTCTGGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGC
62 -ACAGCAGAAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
13796249 GCTTGCACGCTCGTTTCGTGGGTTGACTTAG
126 GCTCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
13796280 GCATACGGAGTTCATTCCCAGGTCTAAGATCGGACTGAATCGAGGGTTATGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTACGG-AGCAGGATCGAC
* * * * *
13796345 AGCACGTAAGGGGGGACCGGGCCGACCCCTGACTTGCGCATTCTACCTCTCCGATAGGCTGAGCG
64 AGCA-G-AAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
13796410 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
*
13796440 GCATACGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13796467 CCCCAACCGG
Statistics
Matches: 275, Mismatches: 51, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
154 2 0.01
155 92 0.33
156 26 0.09
157 2 0.01
158 8 0.03
159 45 0.16
160 99 0.36
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTACGGAGCAGGATCGACAG
CAGAAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13804082 original size:45 final size:45
Alignment explanation
Indices: 13804005--13804886 Score: 296
Period size: 45 Copynumber: 19.6 Consensus size: 45
13803995 GCCCAACATG
* * * *
13804005 TGCCGATGGTGTTCGAGGTAATC-GCCCACACCAGAGGCCATCTTT
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAGAGGCCATCTTC
** * * *
13804050 TATCGATGGTGGTCGAGGCAAGAGCCCGCACCA-AGGAC-TGACTTA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCAT--CTTC
* * * * *
13804095 TGTCGATGGTGCTCAAGGTAACCA-ACCGCACCA-AGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAGA-GGCCATCTTC
* * * * * *
13804140 TACCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCATCTTC
* * * * * *
13804185 TGCCGATGGTGTTTGATGCAACTGCTCGCACCAGGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCATCTTC
* * * * **** *
13804230 TGCCGATGGTGGTCAAGGTAAGAGCCCACACCA-ATGGTTGGCTTA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGA-GGCCATCTTC
* * * * * * * * *
13804275 TGCCGATGGTGCTCAAAG-AA-ATCATCGATACGA-AGGCCTAGC-AC
1 TGCCGATGGTGGTCGAGGCAACAGC-CCG-CACCAGAGGCC-ATCTTC
* * ** * *
13804319 GTGTCGATGGTGTTCGAGGCAATC-GGTCGCACCAGGGGCCATCTTG
1 -TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAGAGGCCATCTTC
* * * * * * * *
13804365 TACAGATGGTGGTCGAGGTAACCGCCCGTACCA-AGGGTCAACTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGA-GGCCATCTTC
* * * * *
13804410 TGCCGATGGTGGTCGAGGGAACCGCCCGCACTAGGGGCCATTTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCATCTTC
* * * * * *
13804455 TACCGATGGTGGTCGAGGCAACCGCCCGTACCA-AGGCCTAGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCC-ATCTTC
* * * * * * * *
13804500 TGTCGATGGTGTTTGAGGTAACTGCCTGCACCA-AGGCC-TGGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCAT--CTTC
* * * ** * *
13804545 TGTCGATGGTGGTTGAGGTAACTA-CCCGCACCA-AGGCTCGGCATG
1 TGCCGATGGTGGTCGAGGCAAC-AGCCCGCACCAGAGGC-CATCTTC
* * * * * *
13804590 TGCCGATAGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCATCTTC
** * * * * * *
13804635 TGCTAATGCTGGTCAAGGCAACTA-CCCACACCA-AGGGTCGTCTTG
1 TGCCGATGGTGGTCGAGGCAAC-AGCCCGCACCAGA-GGCCATCTTC
* * *
13804680 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGGGTCGA-CTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGA-GG-CCATCTTC
** * * * * * * *
13804725 TGTAGATGGTGGCCGAGGCAACCGCTCGTACCAAAGGCCATTTTT
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCATCTTC
* * * ** *
13804770 TGTCGATGGTGGTCGAGGCAAGAGCCCGTACCA-AGGGCCGGCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGA-GGCCATCTTC
* * ** *
13804815 TGCCAATGGTGGTCGAGGCAACCGCCCATACCAGGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCATCTTC
* * *
13804860 TGCCGATGGTGATCGAGGTAACTGCCC
1 TGCCGATGGTGGTCGAGGCAACAGCCC
13804887 ACTTCAAGGC
Statistics
Matches: 620, Mismatches: 180, Indels: 74
0.71 0.21 0.08
Matches are distributed among these distances:
43 3 0.00
44 18 0.03
45 580 0.94
46 18 0.03
47 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGAGGCCATCTTC
Found at i:13804192 original size:90 final size:90
Alignment explanation
Indices: 13803983--13804914 Score: 505
Period size: 90 Copynumber: 10.4 Consensus size: 90
13803973 CAAGGCATTT
* * * * * * * *
13803983 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTCGAGGTAATCGCCCACACC-AGAGGCCATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCATC
* ** **
13804047 TTTTATCGATGGTGGTCGAGGCAAGA
65 TTCTGCCGATGGTGGTCGAGGCAACC
* * * * * * * **
13804073 GCCCGCACCAA-GGACTGACTTATGTCGATGGTGCTCAAGGTAACCAACCGCACCAAGGGCCATC
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATC
*
13804137 TTCTACCGATGGTGGTCGAGGCAACC
65 TTCTGCCGATGGTGGTCGAGGCAACC
* * * * * * * *
13804163 GCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTTGATGCAACTGCTCGCACCAGGGGCCATCT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
* * **
13804228 TCTGCCGATGGTGGTCAAGGTAAGA
66 TCTGCCGATGGTGGTCGAGGCAACC
* * *** * * * * * * ** * * *
13804253 GCCCACACCAATGGTTGGCTTATGCCGATGGTGCTCAAAGAAATC-ATCGATACGAA-GGCCTAG
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCG-CACCAAGGGCC-AT
* * * *
13804316 C-ACGTGTCGATGGTGTTCGAGGCAATC
64 CTTC-TGCCGATGGTGGTCGAGGCAACC
** * * * * * * * *
13804343 GGTCGCACCAGGGGCCATCTTGTACAGATGGTGGTCGAGGTAACCGCCCGTACCAAGGGTCAACT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
* *
13804408 TGTGCCGATGGTGGTCGAGGGAACC
66 TCTGCCGATGGTGGTCGAGGCAACC
* * ** * * * *
13804433 GCCCGCACTAGGGGCCATTTTCTACCGATGGTGGTCGAGGCAACCGCCCGTACCAA-GGCCTAGC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-ATC
* * * * * * *
13804497 ATGTGTCGATGGTGTTTGAGGTAACT
65 TTCTGCCGATGGTGGTCGAGGCAACC
* * * * * * ** **
13804523 GCCTGCACCAA-GGCCTGGCATGTGTCGATGGTGGTTGAGGTAACTACCCGCACCAA-GGCTCGG
1 GCCCGCACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CAT
* * * * *
13804586 CATGTGCCGATAGTGTTCGATGCAACC
64 CTTCTGCCGATGGTGGTCGAGGCAACC
* * ** * * ** * * *
13804613 GCCCGCACCAGGGGCCATCTTGTGCTAATGCTGGTCAAGGCAACTACCCACACCAAGGGTCGTCT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
*
13804678 TGTGCCGATGGTGGTCGAGGCAACC
66 TCTGCCGATGGTGGTCGAGGCAACC
* ** * * * * *
13804703 GCCCGCACCAAGGGTC-GACTTGTGTAGATGGTGGCCGAGGCAACCGCTCGTACCAAAGGCCATT
1 GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATC
* * **
13804767 TTTTGTCGATGGTGGTCGAGGCAAGA
65 TTCTGCCGATGGTGGTCGAGGCAACC
* * * ** *
13804793 GCCCGTACCAAGGGCCGGCTTGTGCCAATGGTGGTCGAGGCAACCGCCCATACCAGGGGCCATCT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
* * *
13804858 TCTGCCGATGGTGATCGAGGTAACT
66 TCTGCCGATGGTGGTCGAGGCAACC
* ** * *
13804883 GCCCACTTCAAGGCCCAGCATGTGCCGATGGT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGT
13804915 NNNNNNNNNN
Statistics
Matches: 629, Mismatches: 197, Indels: 32
0.73 0.23 0.04
Matches are distributed among these distances:
89 17 0.03
90 593 0.94
91 19 0.03
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (90 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
TCTGCCGATGGTGGTCGAGGCAACC
Found at i:13804262 original size:135 final size:135
Alignment explanation
Indices: 13804003--13804877 Score: 535
Period size: 135 Copynumber: 6.5 Consensus size: 135
13803993 AGGCCCAACA
* * * * * * * * ** *
13804003 TGTGCCGATGGTGTTCGAGGTAATCGCCCACACCAGAGGCCATCTTTTATCGATGGTGGTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGG
** * * * * * * * * *
13804068 CAAGAGCCCGCACCAAGGACTGA-CTTATGTCGATGGTGCTCAAGGTAACCA-ACCGCACCAAGG
66 CAACCGCTCGCACCAGGGGC-CATCTTGTGCCGATGGTGGTCGAGGTAA-CAGCCCGCACCAAGG
*
13804131 GCCATCT
129 GCCGTCT
* * * *
13804138 TCTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTTGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGG
* * * * * * *
13804203 CAACTGCTCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCAAGGTAAGAGCCCACACCAATGGT
66 CAACCGCTCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACAGCCCGCACCAAGGGC
* *
13804268 TGGCT
131 CGTCT
* * * * * * ** * * * * *
13804273 TATGCCGATGGTGCTCAAAGAAATC-ATCGATACGA-AGGCCTAGCACGTGTCGATGGTGTTCGA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCG-CACCAGGGGCC-AGCATGTGCCGATGGTGTTCGA
* * * * * *
13804336 GGCAATCGGTCGCACCAGGGGCCATCTTGTACAGATGGTGGTCGAGGTAACCGCCCGTACCAAGG
64 GGCAACCGCTCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACAGCCCGCACCAAGG
* **
13804401 GTCAACT
129 GCCGTCT
* * *** * * *
13804408 TGTGCCGATGGTGGTCGAGGGAACCGCCCGCACTAGGGGCCATTTTCTACCGATGGTGGTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGG
* * * * * * * * * *
13804473 CAACCGCCCGTACCA-AGGCCTAGCATGTGTCGATGGTGTTTGAGGTAACTGCCTGCACCAA-GG
66 CAACCGCTCGCACCAGGGGCC-ATCTTGTGCCGATGGTGGTCGAGGTAACAGCCCGCACCAAGGG
* *
13804536 CCTGGCA
130 CC-GTCT
* * * ** * * * *
13804543 TGTGTCGATGGTGGTTGAGGTAACTACCCGCACCA-AGGCTCGGCATGTGCCGATAGTGTTCGAT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGC-CAGCATGTGCCGATGGTGTTCGAG
* ** * * * *
13804607 GCAACCGCCCGCACCAGGGGCCATCTTGTGCTAATGCTGGTCAAGGCAACTA-CCCACACCAAGG
65 GCAACCGCTCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAAC-AGCCCGCACCAAGG
*
13804671 GTCGTCT
129 GCCGTCT
* * * ** **
13804678 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGTC-GACTTGTGTAGATGGTGGCCGAG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAG-CATGTGCCGATGGTGTTCGAG
* ** * * * * * *
13804742 GCAACCGCTCGTACCAAAGGCCATTTTTTGTCGATGGTGGTCGAGGCAAGAGCCCGTACCAAGGG
65 GCAACCGCTCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACAGCCCGCACCAAGGG
*
13804807 CCGGCT
130 CCGTCT
* ** * * * *
13804813 TGTGCCAATGGTGGTCGAGGCAACCGCCCATACCAGGGGCCATCTTCTGCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGG
13804878 TAACTGCCCA
Statistics
Matches: 548, Mismatches: 176, Indels: 32
0.72 0.23 0.04
Matches are distributed among these distances:
134 20 0.04
135 513 0.94
136 15 0.03
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.20
Consensus pattern (135 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGG
CAACCGCTCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGTAACAGCCCGCACCAAGGGC
CGTCT
Found at i:13806684 original size:45 final size:45
Alignment explanation
Indices: 13806584--13806684 Score: 132
Period size: 45 Copynumber: 2.2 Consensus size: 45
13806574 TTGAGGCATG
* * *
13806584 TGCCCACACCAAGGGCCAACGTGTGCCGATGGTGGTCGATGCGAC
1 TGCCCACACCAAGGGCCAACGTGTGCCGATGGTGGTCAAGGCAAC
* * *
13806629 TGCCCGCACCAAGGGCCAGCGTGTGTCGATGGTGGTCAAGGCAA-
1 TGCCCACACCAAGGGCCAACGTGTGCCGATGGTGGTCAAGGCAAC
13806673 TCGCCCACACCA
1 T-GCCCACACCA
13806685 GATCGAGGCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 1 0.02
45 47 0.98
ACGTcount: A:0.21, C:0.33, G:0.32, T:0.15
Consensus pattern (45 bp):
TGCCCACACCAAGGGCCAACGTGTGCCGATGGTGGTCAAGGCAAC
Found at i:13806816 original size:45 final size:44
Alignment explanation
Indices: 13806723--13807295 Score: 310
Period size: 45 Copynumber: 12.7 Consensus size: 44
13806713 CGGCATGTGT
* * * * *
13806723 CGATGGTGTTCGAGGAAACCG-TCGACACC-AGAGGCCATCTTTTAC
1 CGATGGTGGTCGAGGCAACCGCCCG-CACCAAG-GGCCAGC-TTTGC
* ** *
13806768 CGATGGTGGTTGAGGCAAGAGCCCGCACCAAGGGCTAGCTTATGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTT-TGC
* ** * * *
13806813 CGATGGTGCTCGAGGTGATCGCCCGCACCAAGGGCCATCTTCTGT
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTT-TGC
** * *
13806858 CGATGGTGGTCGAGGCAACCGCCTACACTAAGGCCCAGCATTTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGC-TTTGC
* * * * *
13806903 CGATGGTGTTCAAGGCAACCGCTCGCACCAGGGGCCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGC-TTTGC
** * * * *
13806948 CGATGGTGGTCGAGGCAAGAGCTCACACCAAGGGTCGGCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTT-TGC
* * * * * * *
13806993 CGATAGTGCTCGAGGCAACTGCTCGTACGAA-GGCACAGCACATT-C
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CAG--CTTTGC
* * * * * * * *
13807038 CAATGGTGTTTGAGGCAACTGCCTGCACCGAGGCCCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGC-TTTGC
* * * * *
13807083 CAATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGC-TTTGC
* ** * * * *
13807128 CGATGGTGTTCGACACCACTGCCTGCACCAAGGGGCCATCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAA-GGGCCAGCTT-TGC
* * * * ** **
13807174 CGATGGTGGTTGTGGCAACCGCCTGCACCAGGGGCCATTTTCTAT
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTT-TGC
* * * *
13807219 CGATTGTGGTCGAGGCAACCGCCTGCACCAA-GGCCTAGCACTTAC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGC-TTTGC
* *
13807264 CGATGGTGTTCGAGGCAACTGCCCGCACCAAG
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAAG
13807296 TGGAAACGAG
Statistics
Matches: 400, Mismatches: 112, Indels: 31
0.74 0.21 0.06
Matches are distributed among these distances:
43 1 0.00
44 10 0.03
45 345 0.86
46 42 0.10
47 2 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (44 bp):
CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTTGC
Found at i:13811083 original size:45 final size:45
Alignment explanation
Indices: 13810998--13811085 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
13810988 ATGTGCTCGT
* ** * *
13810998 ACCAAGGGCCAGCGCGTACCGATGGTGGTTGATGCGACTGCCCAC
1 ACCAAAGGCCAGCGCGTACCGATGGTGGTCAAGGCAACTGCCCAC
* *
13811043 ACCAAAGGCCAGCGTGTGCCGATGGTGGTCAAGGCAACTGCCC
1 ACCAAAGGCCAGCGCGTACCGATGGTGGTCAAGGCAACTGCCC
13811086 GCACTAGATT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.22, C:0.31, G:0.33, T:0.15
Consensus pattern (45 bp):
ACCAAAGGCCAGCGCGTACCGATGGTGGTCAAGGCAACTGCCCAC
Found at i:13811155 original size:45 final size:44
Alignment explanation
Indices: 13811105--13812797 Score: 707
Period size: 45 Copynumber: 37.9 Consensus size: 44
13811095 TGAGGTATGT
* * *
13811105 GCCCACACCAAGGCTCGGCATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGC-CAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * **
13811150 GCCCACACCAGGGGCCATCTTTTACCGATGATGGTCGAGCCAAGA
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
13811195 GCCCGCACTAAGGGCTGACTTATGCCCATGGTGCTCGAGGTAACC
1 GCCCGCACCAAGGCCAG-CTTGTGCCGATGGTGTTCGAGGCAACC
* * *
13811240 GCCCGCACTCAGGGCCATCTTCTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCAC-CAAGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13811285 GCTCGCACCAAGGCCTAGCATATGCCGATGGTGTTCGAGGTAACC
1 GCCCGCACCAAGGCC-AGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
13811330 GCTCGCACCAGGGGCCAG-TATGTACCGATGGTGTTCAAGGTAATC
1 GCCCGCACCA-AGGCCAGCT-TGTGCCGATGGTGTTCGAGGCAACC
* * * * * **
13811375 GCCTGCACTAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13811420 GCCCACACTAAGGGTCGGCTTGTGCCGATGGTGCTT-GAGGCAACC
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGTG-TTCGAGGCAACC
* * * * * * *
13811465 GCTCGTACGAAGGCCTAGCATGTACCGATGGTGTTTGAGGCAACT
1 GCCCGCACCAAGGCC-AGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13811510 GCTCGCACCGAGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * *
13811555 GCCCACACCAAGGCCCAGCATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
13811600 GCTCACACCAGGGGCCATCTTGTGCGGATGGTGGTCGAGGCAACC
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13811645 GCCCGCTCCAAGGGTCAACTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
13811690 GCCCGCACGAAGGCCCGGCATGTGCCGATGGTGTTTGACGCAATC
1 GCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
13811735 GCCCGCACTAGGGGCCATCTTGTGCTGATGGTGGTCGAGGTAACC
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
** * * * * * *
13811780 GCCTACACCAAGGGTCATCTTTTGCCGATAGTGGTT-G-GGAAAACT
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGT-GTTCGAGG-CAACC
* * * * * *
13811825 GCCCGCACCAAGGGTCGGCTTGTGCAGTTGGTGGTCAAGGCAACC
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * ** * * * **
13811870 GCCTGCACCAGGGGCTATTTTCTACCGATTGTGGTT-GAGGCAAGA
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGT-GTTCGAGGCAACC
* ** *** * * *
13811915 GCCTGCACCAAGGGCTGGCTTACACCGATGGTGGTCGAGGTAACT
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * ** * *
13811960 GCCCGTAGCAGGGGCCATCTTCTATCGATGGTGGTCGA-CCAA--
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * *
13812002 GGCC-TAGCATGTGTC-GATGGTGGTCGA--G-G--CAAGAGC-A-C
1 GCCCGCACCAAG-GCCAGCTTGT-GCCGATGGTGTTCGAG-GCAACC
* * * * * * *
13812040 GCAC-CA--AGGGTCAGCTTGTACCGATGGTGCTCAAGGTAACC
1 GCCCGCACCAAGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
13812081 TCTCGTACCAGGGGCCATCTTCTACCGATGGTGATCGAGGCAACC
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13812126 GCCCTCACCATGGCCCAGCATGTGTCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13812171 GCCCACACCAAGGCCCAGCATGTACCGATGGTAG-TCGAGGCAACT
1 GCCCGCACCAAGG-CCAGCTTGTGCCGATGGT-GTTCGAGGCAACC
* *
13812216 GCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGG-CCAGCTTGTGCCGATGGTGTTCGAGGCAACC
** * * * *
13812261 GCCTACACCAAGGGTCAGCTAGTGCCGATGGTGCTAGAGGCAACC
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * * *
13812306 ACCCACACCAAGGCCCGATAAGTGCCGATGGTGTTTGAGGCAACT
1 GCCCGCACCAAGGCCAGCT-TGTGCCGATGGTGTTCGAGGCAACC
** * * * * * *
13812351 GCCTACACCAGGGGCCATCTTTTGCCAATGGCGGTT-GAGGCACCC
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGG-TGTTCGAGGCAACC
* * *
13812396 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* ** * * * * * *
13812441 ACCCATACCAAGGGCCGGCTAGTGTCAATGGTGTTCGAAGCAACT
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* ** * * * * *
13812486 GCCCACACCAAGGCTTGACATATGCCGATGGTGGTCAAGGCAACT
1 GCCCGCACCAAGGCCAG-CTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13812531 GCCCGCACCACAGCCCAGCATGTGTCGATGGTGTTCGATGCAACC
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * *
13812576 GCCCACACTAGGGGCCATCTTGTGCCGAAGGTGGTCGAGGTAATC
1 GCCCGCACCA-AGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
13812621 GCCCGTACCAAGGGCCAGCTTGTGCCAATGGTGGTAGAGGCAACC
1 GCCCGCACCAA-GGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
13812666 ACCTGCACCAAGGTTTC-GACATGTGCCGATGGTGATCGAGGCATCC
1 GCCCGCACCAAGG--CCAG-CTTGTGCCGATGGTGTTCGAGGCAACC
* * * **
13812712 GCCCACACCAGGGCCCAGCTTGTGCCGATAGG-GGTCGAGGCAAGT
1 GCCCGCACCAAGG-CCAGCTTGTGCCGAT-GGTGTTCGAGGCAACC
* * * * * *
13812757 ACCCGTACCAAAGGGCAGCCTGTGCCGATGATGGTCGAGGC
1 GCCCGCACC-AAGGCCAGCTTGTGCCGATGGTGTTCGAGGC
13812798 CTTGGCCAAA
Statistics
Matches: 1235, Mismatches: 351, Indels: 124
0.72 0.21 0.07
Matches are distributed among these distances:
35 6 0.00
36 8 0.01
37 2 0.00
38 6 0.00
39 2 0.00
40 8 0.01
41 14 0.01
42 4 0.00
44 42 0.03
45 1065 0.86
46 78 0.06
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (44 bp):
GCCCGCACCAAGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
Found at i:13812738 original size:136 final size:136
Alignment explanation
Indices: 13812549--13812797 Score: 333
Period size: 136 Copynumber: 1.8 Consensus size: 136
13812539 CACAGCCCAG
* * * * * *
13812549 CATGTGTCGATGGTGTTCGATGCAACCGCCCACACTAGGGGCCATCTTGTGCCGA-AGGTGGTCG
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATAGG-GGTCG
* * * *
13812613 AGGTAA-TCGCCCGTACC-AAGGGCCAGCTTGTGCCAATGGTGGTAGAGGCAACCACCTGCACCA
65 AGGCAAGT-ACCCGTACCAAAGGG-CAGCCTGTGCCAATGATGGTAGAGGCAACCACCTGCACCA
13812676 AGGTTTCGA
128 AGGTTTCGA
*
13812685 CATGTGCCGATGGTGATCGAGGCATCCGCCCACACCAGGGCCCAGCTTGTGCCGATAGGGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATAGGGGTCGA
* *
13812750 GGCAAGTACCCGTACCAAAGGGCAGCCTGTGCCGATGATGGTCGAGGC
66 GGCAAGTACCCGTACCAAAGGGCAGCCTGTGCCAATGATGGTAGAGGC
13812798 CTTGGCCAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
136 88 0.91
137 9 0.09
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (136 bp):
CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATAGGGGTCGA
GGCAAGTACCCGTACCAAAGGGCAGCCTGTGCCAATGATGGTAGAGGCAACCACCTGCACCAAGG
TTTCGA
Found at i:13813871 original size:143 final size:143
Alignment explanation
Indices: 13813602--13813871 Score: 326
Period size: 143 Copynumber: 1.9 Consensus size: 143
13813592 GGTCGATCCC
* * * * *
13813602 CGGCTTGCGTATTTTGCCTCTCCACCCGACTAAGCGCCCGTACTCCCGTTTTGTGGGTTGGCTTA
1 CGGCTTGCGCATTATGCCTCTCCACCCGACTAAGCGCCCGCACGCCCGTTTTGTGGGTTGACTTA
* * * * * **
13813667 GGCATAGGGAGTTCATTCCATGTCTAAGCCCTGGCCAGACCGAGGGTTATGGCAATGGGATCGAA
66 GGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTACGGCAACAGGATCGAA
13813732 CCGAGCCGATCTT
131 CCGAGCCGATCTT
* ** * * *
13813745 CGGCTTGCGCATTATGCCTCTTCGGCTGACTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTA
1 CGGCTTGCGCATTATGCCTCTCCACCCGACTAAGCGCCCGCACGCCCGTTTTGTGGGTTGACTTA
* * * *
13813810 GGCATACGGAGTTCATTTC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
66 GGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACCGAGGGTTACGGCAACAGGATC
13813872 AGTAGCATGC
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
142 1 0.01
143 103 0.99
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (143 bp):
CGGCTTGCGCATTATGCCTCTCCACCCGACTAAGCGCCCGCACGCCCGTTTTGTGGGTTGACTTA
GGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTACGGCAACAGGATCGAA
CCGAGCCGATCTT
Found at i:13813999 original size:26 final size:26
Alignment explanation
Indices: 13813969--13814020 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13813959 GTTGGCTTAG
13813969 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
13813995 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13814021 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13820430 original size:45 final size:44
Alignment explanation
Indices: 13820401--13821473 Score: 505
Period size: 45 Copynumber: 23.8 Consensus size: 44
13820391 AGGCCACACT
* * *
13820401 AAGGGCCGGCTTGTGTCGATGGTGCTCGAGGTAACCGCCTGCACT
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGCC-GCACC
* * *
13820446 AAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACCGCTCGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGC-CGCACC
* ** *
13820491 AAGGTCCAGCACGTGTCGATGGTGTTCGAGGCAACCGCCCGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
* * * * * ** * *
13820536 AGGGGCCATCTTCTGTCGATGGTGGTTGAGGCAAGAGCCTACACA
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGCC-GCACC
* * * *
13820581 AAGGGCCGGCTTGTGTCGATGGTGCTCGAGGCAACCACCCGTACG
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACC-GCCGCACC
** * * * * *
13820626 AA-GGCCTAGCACGTGCCGATGGTGTTCGAGGTAACCTCCCTCACC
1 AAGGGCC-AGCTTGTGTCGATGGTGCTCGAGGCAACC-GCCGCACC
* * * *
13820671 GAGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACCGCTCGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGC-CGCACC
* * * * *
13820716 AAGGGCCATCTTCTAGTAGATGGTGGTCGAGGCAACCGCCCCCACC
1 AAGGGCCAGCTTGT-GTCGATGGTGCTCGAGGCAACCG-CCGCACC
** * * *
13820762 AA-GGCCTAGCACGTGCCGATGGTGTTTGAGGCAACCGCCTGCACC
1 AAGGGCC-AGCTTGTGTCGATGGTGCTCGAGGCAACCGCC-GCACC
* * * * * ** *
13820807 AA-GGCCCGGTATGTGCCAATGGTGGTCGACACAACCGCCCGTACC
1 AAGGGCCAGCT-TGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
* * * * *
13820852 AGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
* * * * * *
13820897 AAGGGTCATCTTGTGCCGATAGTGGTCGAGGTAACCGCC-CATACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGCCGC--ACC
* * *
13820942 AAGGGTC-GACTTATG-CAGATGGTGGC-CGAGGTAACCGCCCGCA-C
1 AAGGGCCAG-CTTGTGTC-GATGGT-GCTCGAGGCAACCG-CCGCACC
* ** * * * * *
13820986 TAGGCGCCATTTTTTGTCGATGGTGGTCGAGGCAATCGTCTGTACC
1 AAGG-GCCAGCTTGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
* * ** * * ** *
13821032 AAGGGCCATCTTTTACCGATGGTGGTCAAGGCAAGAGCCCACACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
* * * * *
13821077 AAGGGTC-GACTTGT-ACTGATGGTGGTCGAGGCAACTGCCTGTACC
1 AAGGGCCAG-CTTGTGTC-GATGGTGCTCGAGGCAACCGCC-GCACC
* * * * * **
13821122 AGGGGCCATCTTCTATCGATGGTGGTCGAGGCAAGAGCTCGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGC-CGCACC
* * * * *
13821167 AAGGGTCGGCTTGTATCGATGGTGCTCGAGGCAATCGCCCGTACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
** * *
13821212 -AGAGGCCATTTTCTG-CTGATGGTGGTCGAGGCAACCGCCCGCACC
1 AAG-GGCCAGCTTGTGTC-GATGGTGCTCGAGGCAACCG-CCGCACC
* * * * * *
13821257 AAAGCCCAGCATGTGCCAATGGTGGTCGAGGCAACCGCCTGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGCC-GCACC
* * * * * ** *
13821302 AAGGCCCAGCATGTGCCGGTGGTGTTCGACCCAACCGCCCGCACT
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
* * * * *
13821347 AGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTTGCCCGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAAC-CG-CCGCACC
*** * * *
13821393 AAGGGTTGGCTAGTGCCGCTGGTGCTCGAGGCAACCGCCCGCACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCG-CCGCACC
* * ** * * *
13821438 AAGGCCCGGCACGTGCCGATGGTGTTTGAGGCAACC
1 AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACC
13821474 CCTGTGTCAC
Statistics
Matches: 792, Mismatches: 196, Indels: 80
0.74 0.18 0.07
Matches are distributed among these distances:
43 1 0.00
44 26 0.03
45 667 0.84
46 96 0.12
47 2 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (44 bp):
AAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACCGCCGCACC
Found at i:13820542 original size:135 final size:135
Alignment explanation
Indices: 13820403--13821473 Score: 798
Period size: 135 Copynumber: 7.9 Consensus size: 135
13820393 GCCACACTAA
* * * * * *
13820403 GGGCCGGCTTGTGTCGATGGTGCTCGAGGTAACCGCCTGCACTAAGGGCCATCTTCTGTCGATGG
1 GGGCCAGCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGTCGATGG
* *
13820468 TGGTCGAGGCAACCGCTCGCACCAAGGTCCAGCACGTGTCGATGGTGTTCGAGGCAACCGCCCGC
66 TGGTCGAGGCAACCGCCCGCACCAAGGTCCAGCACGTGCCGATGGTGTTCGAGGCAACCGCCCGC
13820533 ACCAG
131 ACCAG
* * * ** ** * **
13820538 GGGCCATCTTCTGTCGATGGTGGTTGAGGCAAGAGCCTACACAAAGGGCCGGCTTGTGTCGATGG
1 GGGCCAGCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGTCGATGG
* * * * * * *
13820603 TGCTCGAGGCAACCACCCGTACGAAGG-CCTAGCACGTGCCGATGGTGTTCGAGGTAACCTCCCT
66 TGGTCGAGGCAACCGCCCGCACCAAGGTCC-AGCACGTGCCGATGGTGTTCGAGGCAACCGCCCG
13820667 CACC-G
130 CACCAG
* * * * *
13820672 AGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGGCCATCTTCTAGTAGAT
1 -GGGCCAGCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGT-GTCGAT
* *
13820737 GGTGGTCGAGGCAACCGCCCCCACCAAGG-CCTAGCACGTGCCGATGGTGTTTGAGGCAACCGCC
64 GGTGGTCGAGGCAACCGCCCGCACCAAGGTCC-AGCACGTGCCGATGGTGTTCGAGGCAACCGCC
*
13820801 TGCACCA-
128 CGCACCAG
* * * * * ** * * *
13820808 AGGCCCGGTATGTGCCAATGGTGGTCGACACAACCGCCCGTACCAGGGGCCATCTTGTGCCGATG
1 GGGCCAGCT-TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGTCGATG
* * ** * * *
13820873 GTGGTCGAGGCAACTGCCCGCACCAAGGGT-CATCTTGTGCCGATAGTGGTCGAGGTAACCGCCC
65 GTGGTCGAGGCAACCGCCCGCACCAA-GGTCCAGCACGTGCCGATGGTGTTCGAGGCAACCGCCC
** *
13820937 ATACCAA
129 GCACCAG
* * * * * * *
13820944 GGGTC-GACTTATG-CAGATGGTGGCCGAGGTAACCGCCCGCA-CTAGGCGCCATTTTTTGTCGA
1 GGGCCAG-CTTGTGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGG-GCCATCTTGTGTCGA
* * * * * * *** * * * **
13821006 TGGTGGTCGAGGCAATCGTCTGTACCAAGGGCCATCTTTTACCGATGGTGGTCAAGGCAAGAGCC
63 TGGTGGTCGAGGCAACCGCCCGCACCAAGGTCCAGCACGTGCCGATGGTGTTCGAGGCAACCGCC
* *
13821071 CACACCAA
128 CGCACCAG
* * * * * * * *
13821079 GGGTC-GACTTGT-ACTGATGGTGGTCGAGGCAACTGCCTGTACCAGGGGCCATCTTCTATCGAT
1 GGGCCAG-CTTGTGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGTCGAT
** * * ** ** * *
13821142 GGTGGTCGAGGCAAGAGCTCGCACCAAGGGT-CGGCTTGTATCGATGGTGCTCGAGGCAATCGCC
64 GGTGGTCGAGGCAACCGCCCGCACCAA-GGTCCAGCACGTGCCGATGGTGTTCGAGGCAACCGCC
*
13821206 CGTACCAG
128 CGCACCAG
* ** * * * * * * *
13821214 AGGCCATTTTCTG-CTGATGGTGGTCGAGGCAACCGCCCGCACCAAAGCCCAGCATGTGCCAATG
1 GGGCCAGCTTGTGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGTCGATG
* * * * **
13821278 GTGGTCGAGGCAACCGCCTGCACCAAGGCCCAGCATGTGCCGGTGGTGTTCGACCCAACCGCCCG
65 GTGGTCGAGGCAACCGCCCGCACCAAGGTCCAGCACGTGCCGATGGTGTTCGAGGCAACCGCCCG
*
13821343 CACTAG
130 CACCAG
* * * **** * * *
13821349 GGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTTGCCCGCACCAAGGGTTGGCTAGTGCCGCTG
1 GGGCCAGCTTGTGTCGATGGTGGTCGAGGCAAC-CGCCCGCACCAAGGGCCATCTTGTGTCGATG
* * * *
13821414 GTGCTCGAGGCAACCGCCCGCACCAAGGCCCGGCACGTGCCGATGGTGTTTGAGGCAACC
65 GTGGTCGAGGCAACCGCCCGCACCAAGGTCCAGCACGTGCCGATGGTGTTCGAGGCAACC
13821474 CCTGTGTCAC
Statistics
Matches: 729, Mismatches: 187, Indels: 39
0.76 0.20 0.04
Matches are distributed among these distances:
134 11 0.02
135 527 0.72
136 191 0.26
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (135 bp):
GGGCCAGCTTGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTTGTGTCGATGG
TGGTCGAGGCAACCGCCCGCACCAAGGTCCAGCACGTGCCGATGGTGTTCGAGGCAACCGCCCGC
ACCAG
Found at i:13823922 original size:9 final size:9
Alignment explanation
Indices: 13823908--13823933 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
13823898 GTCACCTTTG
13823908 AAGGTGCTA
1 AAGGTGCTA
13823917 AAGGTGCTA
1 AAGGTGCTA
13823926 AAGGTGCT
1 AAGGTGCT
13823934 GAAGACGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.12, G:0.35, T:0.23
Consensus pattern (9 bp):
AAGGTGCTA
Found at i:13830980 original size:45 final size:45
Alignment explanation
Indices: 13830884--13832080 Score: 727
Period size: 45 Copynumber: 26.6 Consensus size: 45
13830874 AGGCCCGACA
* * * * * * *
13830884 TGTGCCGATAGTGTTCGAGGTAACTGCCCACACC-AGACGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCCAGCT
* * * ** *
13830929 TCTACCGATGGTGGTCGAGGTAAGAGCCCGTACCAAGGGCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13830974 TGTACCGATGGTGCTCGAGGCAACCACCCGTACCAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13831019 TCTGCCGATGGTGGTCGAGGCAACCGCCGGCACAAAAGCCCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * *
13831064 TGTGTCGATGGTGTTCGAGGAAACTGCTCGCACCAAGGGCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13831109 TGTGCCAACGGTGTTCGAGGCAACCCCCCACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * ** * *
13831154 TCTACCGATGGTGGTCAAGGCAAAAGCCCACACCAAGGGTC-GACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CT
* * * * * *
13831199 TGTGTCGATGGTGCTCGAGGCAACCGTCTGCACGAA-GGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
* * * * * * * *
13831244 CGTGTCGATGGTGTTCGAGGCTACCGCACACACCGA-GGCCGAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-AGCT
* * * ** *
13831289 TGTGTCGATGGTGGTCGAGGCAATCGCCCGGACCAAGGTTCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* ** * **
13831334 TGTGCCGATGGTGGTGGAGGCAACCATCCGCACCAGGGGCCATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * ** * * ***
13831379 TCTACCGATGGTGGTCGAGGCAAGAGCCCACACCAAAGGTTGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * * *
13831424 TGTGTCGATGCTGCTCGAGGTAATCGCCCGCACCAAGGCCCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * *
13831469 CGTGTCGATGGTGTTCGAGGCAACTGCCCGCATCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * * *
13831514 TGTACCAATGGTGTTCAATGCAACCGCCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
** * * ***
13831559 TGTGCCGATGGTGGTCGAGGCAACCATCTGCACTAAGGGTTGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * * **
13831604 TGTACAGATGGTGGTCGAGGTAACCTCCCGTACCAGGGGCCATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* ** * * **
13831649 TCTATCGATGGTAGTCGAGGTAAGAGCCCGCACCAAGGGCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * ** *
13831694 TGTGCCAATGGTGCTCGAGGCAACCGCCCGCACCCGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * *
13831739 TCTGCCAATGGTGGTCAAGGCAACCGCCC-CTACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGC-ACCAAGGGCCAGCT
* * * *
13831784 TATGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * *
13831829 TGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * * * * *
13831874 TGTACCGATGGTGTTCGATGCAACCGTCCACACC-AGGTGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG-GCCAGCT
* * * * *
13831919 TGTGTCGAAGGTGGTCGAGGCAACTGACCACACCAAGGGCC-GACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CT
* * * * ** *
13831964 AGTGCCGATGGTGCTCGAGGCAATCGCCCACACCAA-GGCTTGACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG-CT
* * * ** * *
13832009 CGTGTCGATGGTGTTCGAGGCAACCGCCTACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
* * *
13832054 TCTGTCAATGGTGGTCGAGGCAACCGC
1 TGTGCCGATGGTGGTCGAGGCAACCGC
13832081 ATGAGCCAAT
Statistics
Matches: 876, Mismatches: 264, Indels: 24
0.75 0.23 0.02
Matches are distributed among these distances:
44 10 0.01
45 854 0.97
46 12 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCT
Found at i:13832138 original size:73 final size:73
Alignment explanation
Indices: 13832016--13832151 Score: 218
Period size: 73 Copynumber: 1.9 Consensus size: 73
13832006 ACACGTGTCG
* *
13832016 ATGGTGTTCGAGGCAACCGCCTACACCAGGGGCCATCTTCTGTCAATGGTGGTCGAGGCAACCGC
1 ATGGTGTTCGAGGCAACCACCCACACCAGGGGCCATCTTCTGTCAATGGTGGTCGAGGCAACCGC
13832081 ATGAGCCA
66 ATGAGCCA
* * * *
13832089 ATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACC
1 ATGGTGTTCGAGGCAACCACCCACACCAGGGGCCATCTTCTGTCAATGGTGGTCGAGGCAACC
13832152 ACCCGCACCA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 57 1.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.20
Consensus pattern (73 bp):
ATGGTGTTCGAGGCAACCACCCACACCAGGGGCCATCTTCTGTCAATGGTGGTCGAGGCAACCGC
ATGAGCCA
Found at i:13832153 original size:45 final size:45
Alignment explanation
Indices: 13832079--13832504 Score: 272
Period size: 45 Copynumber: 9.5 Consensus size: 45
13832069 CGAGGCAACC
* * * * * *
13832079 GCATGAGCCAATGGTGTTCGATGCAACCACCCGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * *
13832124 TCTTGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGGCCTA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-A
* * * * * *
13832170 -C-TAGTGCGGATGGTGTTCGTGGCAATCACCCGTACCAA-GGCTCA
1 GCAT-GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC-CA
* ** * *
13832214 GCATGTGCCGATGGTGGTCGAGGCAACTGTTCGCACCATGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * * * * *
13832259 GCATGTGCCAATGGTGTTCGATGCAATCGCTCGCACCAGGGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * ** * *
13832304 TCTTGTGCCAATGGTGGTCGAGGCAATTGCCTGCACCAATGGCC-
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * *
13832348 GGATTGTGTCGATGGTGGTCGAGGCAACCGTCCACACCAAGGGCC-
1 GCA-TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCA
* * * * * *
13832393 GACATATGCCGATGGTGATTGAGGCAACCGTCGGTACC-AGGGCCTA
1 G-CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC-A
* * ** *
13832439 GCATGTGTCGATGGTGATCGAGGCAAGTGCCCGTACCAAAGGG-CA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGGCCA
* *
13832484 GCCTGTGCCGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
13832505 TGCATGTGCC
Statistics
Matches: 295, Mismatches: 74, Indels: 24
0.75 0.19 0.06
Matches are distributed among these distances:
44 11 0.04
45 273 0.93
46 7 0.02
47 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.20
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCA
Found at i:13832273 original size:208 final size:208
Alignment explanation
Indices: 13831881--13832284 Score: 499
Period size: 208 Copynumber: 1.9 Consensus size: 208
13831871 GCATGTACCG
** * *
13831881 ATGGTGTTCGATGCAACCGTCCACACCAGGTGCCATCTTGTGTCGAAGGTGGTCGAGGCAACTGA
1 ATGGTGTTCGATGCAACCACCCACACCAGGGGCCATCTTGTGTCGAAGGTGGTCGAGGCAACTCA
* *
13831946 CCACACCAAGGGCCGACTAGTGCCGATGGTGCTCGAGGCAATCGCCCACACCAAGGCTTGACACG
66 CCACACCAAGGGCCGACTAGTGCCGATGGTGCTCGAGGCAATCACCCACACCAAGGCTAGACACG
* * * * * *
13832011 TGTCGATGGTGTTCGAGGCAACCGCCTACACCAGGGGCCATCTTCTGTCAATGGTGGTCGAGGCA
131 TGCCGATGGTGGTCGAGGCAACCGCCTACACCAGGGCCCAGCATCTGCCAATGGTGGTCGAGGCA
13832076 ACCGCATGAGCCA
196 ACCGCATGAGCCA
* *
13832089 ATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAAC-CA
1 ATGGTGTTCGATGCAACCACCCACACCAGGGGCCATCTTGTGTCGAAGGTGGTCGAGGCAACTCA
* * * * * **
13832153 CCCGCACCAAGGGCCTACTAGTGCGGATGGTGTTCGTGGCAATCACCCGTACCAAGGCTCAG-CA
66 -CCACACCAAGGGCCGACTAGTGCCGATGGTGCTCGAGGCAATCACCCACACCAAGGCT-AGACA
* * * * * * * *
13832217 TGTGCCGATGGTGGTCGAGGCAACTG-TTCGCACCATGGCCCAGCATGTGCCAATGGTGTTCGAT
129 CGTGCCGATGGTGGTCGAGGCAACCGCCT-ACACCAGGGCCCAGCATCTGCCAATGGTGGTCGAG
13832281 GCAA
193 GCAA
13832285 TCGCTCGCAC
Statistics
Matches: 164, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
207 2 0.01
208 161 0.98
209 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (208 bp):
ATGGTGTTCGATGCAACCACCCACACCAGGGGCCATCTTGTGTCGAAGGTGGTCGAGGCAACTCA
CCACACCAAGGGCCGACTAGTGCCGATGGTGCTCGAGGCAATCACCCACACCAAGGCTAGACACG
TGCCGATGGTGGTCGAGGCAACCGCCTACACCAGGGCCCAGCATCTGCCAATGGTGGTCGAGGCA
ACCGCATGAGCCA
Found at i:13832496 original size:135 final size:135
Alignment explanation
Indices: 13832198--13832504 Score: 300
Period size: 135 Copynumber: 2.3 Consensus size: 135
13832188 GTGGCAATCA
* * * *
13832198 CCCGTACC-AAGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACTGTTCGCACCATGGCCCAGCA
1 CCCGTACCAAAGGC-CAGCATGTGCCGATGGTGGTCGAGGCAACCGTCCACACCAGGGCCCAGCA
* * * * * * *
13832262 TGTGCCAATGGTGTTCGATGCAATCGCTCGCACCAGGGGCAATCTTGTGCCAATGGTGGTCGAGG
65 TATGCCAATGGTGTTCGAGGCAACCGCTCGCACCAGGGCCAAGCATGTGCCAATGGTGATCGAGG
*
13832327 CAATTG
130 CAAGTG
* * * * * *
13832333 CCTGCACCAATGGCC-GGATTGTGTCGATGGTGGTCGAGGCAACCGTCCACACCAAGGGCCGA-C
1 CCCGTACCAAAGGCCAGCA-TGTGCCGATGGTGGTCGAGGCAACCGTCCACACC-AGGGCCCAGC
* * * * *
13832396 ATATGCCGATGGTGATT-GAGGCAACCG-TCGGTACCAGGGCCTAGCATGTGTCGATGGTGATCG
64 ATATGCCAATGGTG-TTCGAGGCAACCGCTC-GCACCAGGGCCAAGCATGTGCCAATGGTGATCG
13832459 AGGCAAGTG
127 AGGCAAGTG
* * *
13832468 CCCGTACCAAAGGGCAGCCTGTGCCGATGATGGTCGA
1 CCCGTACCAAAGGCCAGCATGTGCCGATGGTGGTCGA
13832505 TGCATGTGCC
Statistics
Matches: 135, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
134 4 0.03
135 118 0.87
136 13 0.10
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.20
Consensus pattern (135 bp):
CCCGTACCAAAGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGTCCACACCAGGGCCCAGCAT
ATGCCAATGGTGTTCGAGGCAACCGCTCGCACCAGGGCCAAGCATGTGCCAATGGTGATCGAGGC
AAGTG
Found at i:13833650 original size:45 final size:45
Alignment explanation
Indices: 13833556--13833656 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 45
13833546 TAGGGCATGT
* * * * * *
13833556 GCCCGCACTAAGGGCCAGCGCATGCCGATGGTGGTCGATGCAACT
1 GCCCGTACCAAGGGCCAGCGCATACCGATGGTGGTCGAGGAAACC
**
13833601 GCCCGTACCAAGGGCCAGCGTGTACCGATGGTGGTCGAGGAAACC
1 GCCCGTACCAAGGGCCAGCGCATACCGATGGTGGTCGAGGAAACC
13833646 GCCCGTACCAA
1 GCCCGTACCAA
13833657 ATCGAGGGCA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.22, C:0.32, G:0.33, T:0.14
Consensus pattern (45 bp):
GCCCGTACCAAGGGCCAGCGCATACCGATGGTGGTCGAGGAAACC
Found at i:13833768 original size:45 final size:45
Alignment explanation
Indices: 13833692--13836317 Score: 1271
Period size: 45 Copynumber: 58.5 Consensus size: 45
13833682 GCCCGGCATG
* * *** *
13833692 TGCCGATGGTGTTCGAGGCAACTGTTTGCACCAAGGGCCATCTTT
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * ** *
13833737 TACCAATGGTGGTTGAGGCAAGAGCCCGCACCAAGGGTCGGCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * *
13833782 TGTCGATGGTGCTAGAGGTAACTGCCCGCACCAAGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * *
13833827 TGCTGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGC-AC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* *
13833871 ATGCCGATGGTGTTCGAGGCAATC-GACC-CACCAAGGGCCATCTTC
1 -TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * ** *
13833916 TGCTGATGGTGGTCGAGGCAATAGCCCGCACCAAGGGCCGGCTTA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * *
13833961 TGTCGATGGTGCTCGAGGCAACCA-CCCACACGAA-GGCCTAGC-AC
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCC-ATCTTC
* * * * * * *
13834005 GTGCCGATAGTGGTTGAGGCAATC-GCCCACACCAAGGCCCAGCATG
1 -TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * * * * * * *
13834051 TGCCGATTGTGTTTGATGCAACTGCCTGCACCAGGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * ** *
13834096 TGCCGATAGTGGTCGAGGTAACCA-CCCGCACAAAGGGTTAGCTTC
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * * * *
13834141 TACCGATGGTGCTCGAGGCAACTGCCCGCACCAGGGGCCATTTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
** * * * * * *
13834186 TATCGATGGTGGTTGAGGTAAGAGCTCGCACCAAGGGCTGA-CTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGC-CATCTTC
* * * * * *
13834231 TGTCGAAGGTGGTCGAGGCAACCGCCCGTACCAA-GGCCTAGC-AC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-ATCTTC
* * *
13834275 GTGCCGATGGTGTTCGAGGCAACCA-CCCGCACCAA--GCC-TGACATG
1 -TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCAT--CTTC
* * * * * *
13834320 TGCCGATGGTGGTCGAGGTAACCGCCCACACCAAGGCCCGA-CATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-ATCTTC
* * * ** *
13834365 TGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGTTATCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
** * *
13834410 TGCCGATGGTGGTTAAGGCAACTGCCCGCACCAAGGGTCATCTTGC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTT-C
* * * * * * *
13834456 -GCAGATGGTGGTCGAGGTAACTGCTCGTACCAGGGGCCATTTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * *
13834500 TGTCAATGGTGGTCGAGGTAAGAGCCTGCACCAAGGGCCGA-CTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-ATCTTC
* * * * * *
13834545 TGCCGATGGTGCTTGAGGCAGCTGCCTGCACCAGGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * *
13834590 TGTCGATGGTGGTCGAGGCAACCA-CCCGTACTAA-GGCCTAGCATG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCC-ATCTTC
* *
13834635 TGTCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGA-CTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-ATCTTC
* * * * * * * *
13834680 TACTGATGCTGTTTGAGGTAACCA-CCCGTACCAGGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
*** * * * * * *
13834725 TATTGAAGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * * * *
13834770 TGGCGATGGTGTTCGATGCAACAGCCCACACTAGGGGCTATCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
** * * **
13834815 TGTTGATGGTGGTCGAGGTAACCA-CCCGCACCAAGGGCCAGCTAA
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * * * ** *
13834860 TGCCGATGGTGCTCGAGGTAACCGCCCGGACCAA-GGCTCGGC-AC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGC-CATCTTC
* * * * * *
13834904 GTGCCGATGGTGTTCGAGGCAACCGCCTGCTCCAGGGGCCATCTTT
1 -TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
** * * * *
13834950 TATCGATGGTGGTCGACGCAATC-GCCCACACCAAGGGTCATCTTG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * * *
13834995 TGTCGATGGTGGTCAAGGCAATC-GCCCGCACCAAGGGTCATCTTG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * * *
13835040 TGCAGATGGTGGTCGAGGCAACCGTCCGCACCAAGGGCCATATTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
*** * * *
13835085 TATTGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGGCCGA-CTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-ATCTTC
* * * * *
13835130 TGTCGATGGTGCTCGAGGCAACTGCCTGCACCAGGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
** * * * *
13835175 TATCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGGCTAACTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * *
13835220 TGCTGATGGTGCTCGAGGCAACCGCCCGCACC-AGGTG-CATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGG-GCCATCTTC
* * * * * * * *
13835264 TGTCGATAGTGGTCGAGGTAACCA-CCCGTACCAAGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * * * * * * * *
13835309 TGTCGATGGTGTTCGAGGTAACCGCCCGTACCAAGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * *
13835354 TGGCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
** * * * **
13835399 TGCTAATGGTGGTCGAGGCAACCGCCTGCACCAAGGGCCAGCTAG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * ***
13835444 TGCTGATGGTGGTCGAGGCAACCA-CCCGCACCAAGGCCCGAT-AGG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCC-ATCTTC
* * * * **
13835489 TGCTGATGGTGTTCGAGGTAACCGCTTGCACC-AGAGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAG-GGCCATCTTC
* * * * * * * * *
13835534 TACCTATGATGGTCGAGGTAACCGCCCGCACCAAGGCCCAACATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * * *
13835579 TACCAATGGTGGTCAAGGTAAGAGCTCGCACCAAGGGCCGA-CTTA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-ATCTTC
* * * * *
13835624 TGCTGATGGTGCTCGAGGCAATC-GCCTGGACTAAGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
** * * * * * *
13835669 TATCGATGATGGTTGAGGCAAC--CCCAGCACCAAGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCC-GCACCAAGGGCCATCTTC
* * * * * * * * *
13835713 TGCCGATGGTGTTCGGGGTAACCGCCTGTACCAA-GGCCTAGCATA
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCC-ATCTTC
* * * * * * *
13835758 TGGCGATGGTGTTCGACGTAACTGCCTGCACCAAGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* ** * * **
13835803 TGCCGATGGTGGTCGAGGCAACCGCCCTTACCAAGGGTCAGCTAG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
** * * * *****
13835848 TGCTAATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAAAAAG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * **
13835893 TGCCGATGGTGTTCGAGGCAACCGCCTACACC-AGAGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAG-GGCCATCTTC
* * * * * * *
13835938 TGCCGATGGTGGTCAAGGCGACCGTCCGCACCAA-AGCC-TGGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCAT--CTTC
* * * * * * * *
13835983 TGTCGATGGTGTTTGATGCAACTGCCCACACCAGGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * **
13836028 TGTCGATGGTAGTCGAGGCAACCA-CCCGCACCAAGGGCCGA-CTAG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCC-ATCTTC
* * * *
13836073 TGCCGATGGTGGTCGAGGCAACCGCCCGTACTC-GGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCAC-CAAGGGCCATCTTC
* * * * *** *
13836118 TGCCTAT-ATGGTCGAGGCAATC-GCCCGTACGAAGGGCTGGCTTG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* * * * * * *
13836162 TGCCGATGGTGGTCGAGGCAACCGCCTGCACTAAGGGTCAGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * * *
13836207 TGCCGATGGTGGTCGAGGCAACTGCCTGCACTAAGGGTCAGCATG
1 TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
* * * * * * *
13836252 TGCCGATGGTGATCGAAGCAACCA-CCCGTACCATGGCCCAGCTTG
1 TGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGGCCATCTTC
* *
13836297 TGTCGATGGCGGTCGAGGCAA
1 TGCCGATGGTGGTCGAGGCAA
13836318 GTGCTCGTAC
Statistics
Matches: 1967, Mismatches: 530, Indels: 168
0.74 0.20 0.06
Matches are distributed among these distances:
43 4 0.00
44 205 0.10
45 1713 0.87
46 44 0.02
47 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGGCCATCTTC
Found at i:13835884 original size:404 final size:403
Alignment explanation
Indices: 13834572--13835971 Score: 1244
Period size: 404 Copynumber: 3.5 Consensus size: 403
13834562 GCAGCTGCCT
* * * * * *
13834572 GCACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACCACCCGT-ACTAA-GGCCTAGC-AT
1 GCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCC-TCACCAAGGGTC-AGCTA-
* ** * ** * * *
13834634 GTG-TCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCGACT-TCTACTGATGCTGTTTGAG
63 GTGCT-AATGGTGGTCGAGGCAACCGCCCGCACCAA-GGCCCA-TAAGTGCTGATGGTGTTCGAG
* * * * *** *
13834697 GTAACCACCCGTACCAGGGGCCATCTTCTATTGAAGGTGGTCGAGGCAACCGCCCGCACCAAGGC
125 GTAACCGCCTGCACCAGAGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGC
* * ** * * * * * * * * * * * * * *
13834762 CCAGCATGTGGCGATGGTGTTCGATGCAACAGCCCACACTAGGGGCTATCTTGTGTTGATGGTGG
190 CCAACATCTACCAATGGTGGTCAAGGTAAGAGCCCGCACCAAGGGCCAACTTATGCTGATGGTGC
* * * ** ** * * * * * *
13834827 TCGAGGTAACCACCCGCACCAAGG-GCCAGCTAATGCCGATGGTGCTCGAGGTAACCGCCCGGAC
255 TCGAGGCAACCGCCCGCA-CAAGGTG-CATCTTCTATCGATAGTGGTCGAGGCAACCACCAGCAC
* * * * * * * * * * **
13834891 CAAGGCTCGGCACGTGCCGATGGTGTTCGAGGCAACCGCCTGCT-CCAGGGGCCATCTTTTATCG
318 CAAGGCCCAGCATGTGCCGATGGTGTTCGAGGTAACCGCCCG-TACCAAGGCCCAGCATATGGCG
* *
13834955 ATGGTGGTCGACGCAATCGCCC
382 ATGGTGTTCGACGCAACCGCCC
* * * * * * * *
13834977 ACACCAAGGGTCATCTTGTGTCGATGGTGGTCAAGGCAATCGCCCGCACCAAGGGTCATCTTGTG
1 GCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCTCACCAAGGGTCAGCTAGTG
* * ** ** *
13835042 C-AGATGGTGGTCGAGGCAACCGTCCGCACCAAGGGCCATATTCTATTGATGGTGGTCGAGGTAA
66 CTA-ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCATA-AGTGCTGATGGTGTTCGAGGTAA
** * * * * * * * *
13835106 GAGCCCGCACCA-AGGGCCGA-CTTGTGTCGATGGTGCTCGAGGCAACTGCCTGCACCAGGGGCC
129 CCGCCTGCACCAGA-GGCC-ATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCC
* * * * * * *
13835169 ATCTTCTATCGATGGTGGTCGAGGTAAGAGCCCGCACCAAGGGCTAACTTCTGCTGATGGTGCTC
192 AACATCTACCAATGGTGGTCAAGGTAAGAGCCCGCACCAAGGGCCAACTTATGCTGATGGTGCTC
* * * * *
13835234 GAGGCAACCGCCCGCACCAGGTGCATCTTCTGTCGATAGTGGTCGAGGTAACCACCCGTACCAAG
257 GAGGCAACCGCCCGCACAAGGTGCATCTTCTATCGATAGTGGTCGAGGCAACCACCAGCACCAAG
* *
13835299 GCCCAGCATGTGTCGATGGTGTTCGAGGTAACCGCCCGTACCAAGGCCCAGCATGTGGCGATGGT
322 GCCCAGCATGTGCCGATGGTGTTCGAGGTAACCGCCCGTACCAAGGCCCAGCATATGGCGATGGT
*
13835364 GTTCGATGCAACCGCCC
387 GTTCGACGCAACCGCCC
* * ** *
13835381 GCACCAGGGGCCATCTTATGCTAATGGTGGTCGAGGCAACCG-CCTGCACCAAGGGCCAGCTAGT
1 GCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCT-CACCAAGGGTCAGCTAGT
* * *
13835445 GCTGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCGATAGGTGCTGATGGTGTTCGAGGTAA
65 GCTAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCC-ATAAGTGCTGATGGTGTTCGAGGTAA
* * * * *
13835510 CCGCTTGCACCAGAGGCCATCTTCTACCTATGATGGTCGAGGTAACCGCCCGCACCAAGGCCCAA
129 CCGCCTGCACCAGAGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAA
* * *
13835575 CATGTACCAATGGTGGTCAAGGTAAGAGCTCGCACCAAGGGCCGACTTATGCTGATGGTGCTCGA
194 CATCTACCAATGGTGGTCAAGGTAAGAGCCCGCACCAAGGGCCAACTTATGCTGATGGTGCTCGA
* * * *
13835640 GGCAATCGCCTGGACTAAGG-GCCATCTTCTATCGAT-GATGGTTGAGGCAACC-CCAGCACCAA
259 GGCAACCGCCCGCAC-AAGGTG-CATCTTCTATCGATAG-TGGTCGAGGCAACCACCAGCACCAA
* * *
13835702 GGCCCAGCATGTGCCGATGGTGTTCGGGGTAACCGCCTGTACCAAGGCCTAGCATATGGCGATGG
321 GGCCCAGCATGTGCCGATGGTGTTCGAGGTAACCGCCCGTACCAAGGCCCAGCATATGGCGATGG
* * *
13835767 TGTTCGACGTAACTGCCT
386 TGTTCGACGCAACCGCCC
*
13835785 GCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCTTACCAAGGGTCAGCTAGTG
1 GCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCTCACCAAGGGTCAGCTAGTG
* * * *
13835850 CTAATGGTGCTCGAGGCAACCGCCCGCACCAAGGCCCAAAAAGTGCCGATGGTGTTCGAGGCAAC
66 CTAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCC-ATAAGTGCTGATGGTGTTCGAGGTAAC
* * * *
13835915 CGCCTACACCAGAGGCCATCTTCTGCCGATGGTGGTCAAGGCGACCGTCCGCACCAA
130 CGCCTGCACCAGAGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
13835972 AGCCTGGCAT
Statistics
Matches: 808, Mismatches: 167, Indels: 41
0.80 0.16 0.04
Matches are distributed among these distances:
403 5 0.01
404 562 0.70
405 237 0.29
406 4 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (403 bp):
GCACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCTCACCAAGGGTCAGCTAGTG
CTAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCATAAGTGCTGATGGTGTTCGAGGTAACC
GCCTGCACCAGAGGCCATCTTCTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACA
TCTACCAATGGTGGTCAAGGTAAGAGCCCGCACCAAGGGCCAACTTATGCTGATGGTGCTCGAGG
CAACCGCCCGCACAAGGTGCATCTTCTATCGATAGTGGTCGAGGCAACCACCAGCACCAAGGCCC
AGCATGTGCCGATGGTGTTCGAGGTAACCGCCCGTACCAAGGCCCAGCATATGGCGATGGTGTTC
GACGCAACCGCCC
Found at i:13836245 original size:25 final size:25
Alignment explanation
Indices: 13836172--13836245 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
13836162 TGCCGATGGT
*
13836172 GGTCGAGGCAACCGCCTGCACTAAG
1 GGTCGAGGCAACTGCCTGCACTAAG
** *
13836197 GGTC-A-GCATGTGCC-G-A-T-GG
1 GGTCGAGGCAACTGCCTGCACTAAG
13836216 TGGTCGAGGCAACTGCCTGCACTAAG
1 -GGTCGAGGCAACTGCCTGCACTAAG
13836242 GGTC
1 GGTC
13836246 AGCATGTGCC
Statistics
Matches: 35, Mismatches: 7, Indels: 14
0.62 0.12 0.25
Matches are distributed among these distances:
19 1 0.03
20 5 0.14
21 2 0.06
22 8 0.23
23 7 0.20
24 2 0.06
25 9 0.26
26 1 0.03
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (25 bp):
GGTCGAGGCAACTGCCTGCACTAAG
Found at i:13836255 original size:23 final size:23
Alignment explanation
Indices: 13836185--13836255 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
13836175 CGAGGCAACC
13836185 GCCTGCACTAAGGGTCAGCATGT
1 GCCTGCACTAAGGGTCAGCATGT
* **
13836208 GCC-G-A-T-GGTGGTCGAGGCAACT
1 GCCTGCACTAAG-GGTC-A-GCATGT
13836230 GCCTGCACTAAGGGTCAGCATGT
1 GCCTGCACTAAGGGTCAGCATGT
13836253 GCC
1 GCC
13836256 GATGGTGATC
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
19 1 0.03
20 5 0.14
21 2 0.06
22 8 0.23
23 11 0.31
24 2 0.06
25 5 0.14
26 1 0.03
ACGTcount: A:0.20, C:0.27, G:0.34, T:0.20
Consensus pattern (23 bp):
GCCTGCACTAAGGGTCAGCATGT
Found at i:13836378 original size:13 final size:13
Alignment explanation
Indices: 13836360--13836384 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13836350 ATGGTCGATG
13836360 CATGTGCCATCAC
1 CATGTGCCATCAC
13836373 CATGTGCCATCA
1 CATGTGCCATCA
13836385 TGTGCCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:13837106 original size:26 final size:26
Alignment explanation
Indices: 13837077--13837129 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13837067 GTTGACTTAG
13837077 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13837103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13837129 G
1 G
13837130 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13837458 original size:159 final size:159
Alignment explanation
Indices: 13837103--13837474 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 159
13837093 CCCAGTCTAA
* ** *
13837103 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAACAAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAACAAGACCAGCA
* * * * * * *
13837168 GCATGTAAGGGGGGACCGCACCAATCCTCGGCTTACGCATTCTACCTCTCCGGTTGGCTGAGCGC
66 GCACGTAAGGGGGGACCGCACCAATCCTCGACTTACGCATTATACCTCTCCAGTCGGCTCAGCAC
* * *
13837233 CCGTACACCCATTTCGTGGGTTAGCTTAG
131 CCGCACACCCATTTCATGGGTTAGATTAG
* * *
13837262 GCATACAGAGTTCATT-CCATGTCTAAGCCA-CAG-CCAGACCGAGGGTTGTGGCAGCAAGACC-
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATCAGACCAGACCGAGGGTTGTGACAACAAGACCA
* * * * * ** * * *
13837323 GATAGTACGT-AGAGGGGGATCGGACCGATCCTCGACTTGTGCCTTATGCCTCTTCAGTCGGCTC
63 G-CAGCACGTAAG-GGGGGACCGCACCAATCCTCGACTTACGCATTATACCTCTCCAGTCGGCTC
* *
13837387 AGCACCCGCACACTCGTTTCATGGGTT-GAATTAG
126 AGCACCCGCACACCCATTTCATGGGTTAG-ATTAG
* **
13837421 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGACAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAA
13837475 TAGGATCGGT
Statistics
Matches: 169, Mismatches: 35, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.01
158 10 0.06
159 151 0.89
160 6 0.04
161 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAACAAGACCAGCA
GCACGTAAGGGGGGACCGCACCAATCCTCGACTTACGCATTATACCTCTCCAGTCGGCTCAGCAC
CCGCACACCCATTTCATGGGTTAGATTAG
Found at i:13842481 original size:134 final size:137
Alignment explanation
Indices: 13842182--13842484 Score: 332
Period size: 134 Copynumber: 2.2 Consensus size: 137
13842172 CGAGGCATGT
* * * * *
13842182 GCCCACACCAAGGCCCGGCA-TGTGCCGATAGTGTTTGAGGCAACCGCCCGCACCAGGGGCCATC
1 GCCCACACCAAGACCCAGCACTGTGCCGATGGTGTTTGAAGCAACCGCCCGCACCAGGGGCCAGC
* * *
13842246 TTCTACCGATGGTGCTCAAGGTAATCGCCCGGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGA
66 ATCTACCGATGGTGCTCAAGGTAATCGCCCGGCACCAAGGGCCATCTTCTGCCGAAGGTGGTCGA
*
13842311 GGCAACC
131 GGCAACA
** * *
13842318 GCCCGTAGCAAGGCCCAGCAC-GTGCCGATGGTGTTTGAAGCAACCG-CCGCACCAGGGGCCAGC
1 GCCCACACCAAGACCCAGCACTGTGCCGATGGTGTTTGAAGCAACCGCCCGCACCAGGGGCCAGC
* ** * * * *
13842381 ATGTGTCGATGGTGTTCGAGGTAA-C-CACCTGCACCAGGGGCCATCTTCTGCCGAAGGTGGTCG
66 ATCTACCGATGGTGCTCAAGGTAATCGC-CCGGCACCAAGGGCCATCTTCTGCCGAAGGTGGTCG
*
13842444 AGGCAAGA
130 AGGCAACA
* *
13842452 GCCCACACCAAAGACCTA-C-CTGTGTCGATGGTG
1 GCCCACACC-AAGACCCAGCACTGTGCCGATGGTG
13842485 CTCGAGGCAA
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
133 2 0.01
134 57 0.41
135 40 0.29
136 39 0.28
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (137 bp):
GCCCACACCAAGACCCAGCACTGTGCCGATGGTGTTTGAAGCAACCGCCCGCACCAGGGGCCAGC
ATCTACCGATGGTGCTCAAGGTAATCGCCCGGCACCAAGGGCCATCTTCTGCCGAAGGTGGTCGA
GGCAACA
Found at i:13842519 original size:179 final size:180
Alignment explanation
Indices: 13842199--13842540 Score: 411
Period size: 179 Copynumber: 1.9 Consensus size: 180
13842189 CCAAGGCCCG
* * *
13842199 GCATGTGCCGATAGTGTTTGAGGCAACCGCCCGCACCAGGGGCCATCTTCTACCGATGGTGCTCA
1 GCATGTGCCGATAGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACCGAAGGTGCTCA
* ** * * * * * * **
13842264 AGGTAATCGCCCGGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACCGCCCGTAGCAA
66 AGGCAAGAGCCCGACACCAAAGACCATCCTCTGTCGATGGTGCTCGAGGCAACCACCCACAGCAA
*
13842329 GGCCCAGCACGTGCCGATGGTGTTTGAAGCAACCGCCGCACCAGGGGCCA
131 GGCCCAGCACGTGCCGATGGTGTTCGAAGCAACCGCCGCACCAGGGGCCA
* * * * * * *
13842379 GCATGTGTCGATGGTGTTCGAGGTAACCACCTGCACCAGGGGCCATCTTCTGCCGAAGGTGGTCG
1 GCATGTGCCGATAGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACCGAAGGTGCTCA
* *
13842444 AGGCAAGAGCCC-ACACCAAAGACC-TACCTGTGTCGATGGTGCTCGAGGCAATCACCCACATG-
66 AGGCAAGAGCCCGACACCAAAGACCAT-CCTCTGTCGATGGTGCTCGAGGCAACCACCCACA-GC
* *
13842506 AAGGCCTAGCACGTGCCGATGGTGTTCGAGGCAAC
129 AAGGCCCAGCACGTGCCGATGGTGTTCGAAGCAAC
13842541 TGCCCACACC
Statistics
Matches: 134, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
178 1 0.01
179 68 0.51
180 65 0.49
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (180 bp):
GCATGTGCCGATAGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCTTCTACCGAAGGTGCTCA
AGGCAAGAGCCCGACACCAAAGACCATCCTCTGTCGATGGTGCTCGAGGCAACCACCCACAGCAA
GGCCCAGCACGTGCCGATGGTGTTCGAAGCAACCGCCGCACCAGGGGCCA
Found at i:13842858 original size:314 final size:314
Alignment explanation
Indices: 13842182--13843351 Score: 853
Period size: 314 Copynumber: 3.7 Consensus size: 314
13842172 CGAGGCATGT
* * * * * * * * * * ***
13842182 GCCCACACCAAGGCCCGGCATGTGCCGATAGTGTTTGAGGCAACCGCCCGCACCAGGGGCCATCT
1 GCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACTGCCCACACCAAGGCCCAAAA
* * * * * * * * * * *
13842247 TCTACCGATGGTGCTCAAGGTAATCGCCCGGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAG
66 TGTGCCGATGATGGTCGAGGCAATCGCCC-GCACCAAGGCCCATCATATGCCGATGGTGGTCGAC
* * ** * *** * * *
13842312 GCAACCGCCCGTAGCAAGGCCCAGCACGTGCCGATGGTGTTTGAAGCAACCG-CCGCACCAGGGG
130 GCAACCGCCCGCACCAAGGGTCATCTTATGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGGG
* * * * * * * * * * *
13842376 CCAGCATGTGTC-GATGGTGTTCGAGGTAACCACCTGCACCAGGGGCCATCTTCTGCCGAAGGTG
195 CCAGCTTGTG-CAGATAGTGCTCGAGGCAACCGCCCGCACTAGGGGCCATTTTCTACAGATGGTG
* * ** * * ** * * * *
13842440 GTCGAGGCAAGAGCCCACACCAAAGACCTACCTGTGTCGATGGTGCTCGAGGCAATC
259 GTCGAGGCAACAGCTCGTACCAAGGGCCGGCTTATG-CGATAGTGCTCGAGGCAACC
* ** * * * * * * *
13842497 ACCCACATGAAGGCCTAGCACGTGCCGATGGTGTTCGAGGCAACTGCCCACACCGAGGCCCAATA
1 GCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACTGCCCACACCAAGGCCCAAAA
* * * *
13842562 TGTGCCGATTATGGTCGAGGCAATCGCTCGCACCAAGGCCCAGT-ATGTGCCGATGGTGTTCGAC
66 TGTGCCGATGATGGTCGAGGCAATCGCCCGCACCAAGGCCCA-TCATATGCCGATGGTGGTCGAC
* * * *
13842626 GCAACCGCCTGCACC-AGGGGCTATCTTATGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG
130 GCAACCGCCCGCACCAAGGGTC-ATCTTATGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGG
* * *
13842690 GCCAGCTTGTGCTGATGGTGCTCGAGGCAACCGCCCGCACTGGGGGCCATTTTCTATC-GATGGT
194 GCCAGCTTGTGCAGATAGTGCTCGAGGCAACCGCCCGCACTAGGGGCCATTTTCTA-CAGATGGT
* * * *
13842754 GGTCGAGGCAAGAGCTCGTACCAAGGGTCGGCTTGTGC-AGTAGTGCTCGAGGCAACT
258 GGTCGAGGCAACAGCTCGTACCAAGGGCCGGCTTATGCGA-TAGTGCTCGAGGCAACC
* * * * * * ** *
13842811 GCCCGCACCGAGGCCCGGCATGTGTCAATGTTGGTCGAGGTAACTGCCCGTACCAAGGCTCAAAA
1 GCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACTGCCCACACCAAGGCCCAAAA
* * * * * * * * *
13842876 TGTGCCGATGGTGTTCGATGTAATCGCCCGTACCAGGGGCCATCTTATGCCGATGGTGGTCGAGG
66 TGTGCCGATGATGGTCGAGGCAATCGCCCGCACCAAGGCCCATCATATGCCGATGGTGGTCGACG
* * *
13842941 CAACCGCCCGCACCAAGGGTCATCTTGTGCCGATGGTGGTCGAAGCAACCTCCCGCACCAAGGGT
131 CAACCGCCCGCACCAAGGGTCATCTTATGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGGGC
* * *
13843006 CAGCTTGTGCAGATAGTGGTCGAGGTAACCGCCTGCACTAGGGGCCATTTTCTACAGATGGTGGT
196 CAGCTTGTGCAGATAGTGCTCGAGGCAACCGCCCGCACTAGGGGCCATTTTCTACAGATGGTGGT
* ** * * * *
13843071 GGAGTTAACCGCTCGTACCAAGGGCCGGCTTATGCGATGGTGGTCGAGGTAACC
261 CGAGGCAACAGCTCGTACCAAGGGCCGGCTTATGCGATAGTGCTCGAGGCAACC
* ** ** * * * ***
13843125 GCCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGGTAAGAGCCCGTACTAAGGGCGAGCT
1 GCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACTGCCCACACCAAGGCCCAAAA
* * * * * * * * * * *
13843190 TGTACCGATGGTGCTCGAGGAAACCACCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGG
66 TGTGCCGATGATGGTCGAGGCAATCGCCCGCACCAAGGCCCATCATATGCCGATGGTGGTCGACG
* ** * * * * * * *
13843255 CAACCGTCCGCACCAAGGCCCAGCATT-TGCCAATTGTGTTCGAGGCAACCGCCCACACCAAGGC
131 CAACCGCCCGCACCAAGGGTCATC-TTATGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGGG
* * * *
13843319 CCAGCATGTGCCA-ATGGTGGTCGAGGTAACCGC
195 CCAGCTTGTG-CAGATAGTGCTCGAGGCAACCGC
13843352 TTGCACCAAG
Statistics
Matches: 684, Mismatches: 159, Indels: 25
0.79 0.18 0.03
Matches are distributed among these distances:
313 7 0.01
314 507 0.74
315 169 0.25
316 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (314 bp):
GCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGTAACTGCCCACACCAAGGCCCAAAA
TGTGCCGATGATGGTCGAGGCAATCGCCCGCACCAAGGCCCATCATATGCCGATGGTGGTCGACG
CAACCGCCCGCACCAAGGGTCATCTTATGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGGGC
CAGCTTGTGCAGATAGTGCTCGAGGCAACCGCCCGCACTAGGGGCCATTTTCTACAGATGGTGGT
CGAGGCAACAGCTCGTACCAAGGGCCGGCTTATGCGATAGTGCTCGAGGCAACC
Found at i:13843027 original size:269 final size:269
Alignment explanation
Indices: 13842531--13843030 Score: 646
Period size: 269 Copynumber: 1.9 Consensus size: 269
13842521 CCGATGGTGT
* * *
13842531 TCGAGGCAACTGCCCACACCGAGGCCCAATATGTGCCGATTATGGTCGAGGCAATCGCTCGCACC
1 TCGAGGCAACTGCCCACACCGAGGCCCAACATGTGCCAATTATGGTCGAGGCAATCGCCCGCACC
** * * *
13842596 AAGGCCCAGTATGTGCCGATGGTGTTCGACGCAACCGCCTGCACCAGGGGCTATCTTATGTCGAT
66 AAGGCCCAAAATGTGCCGATGGTGTTCGACGCAACCGCCCGCACCAGGGGCCATCTTATGCCGAT
* *
13842661 GGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCTGATGGTGCTCGAGGCAACCGCCC
131 GGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGCTCGAAGCAACCGCCC
*** ** * *
13842726 GCACTGGGGGCCATTTTCTATCGATGGTGGTCGAGGCAAGAGCTCGTACCAAGGGTCGGCTTGTG
196 GCACCAAGGGCCAGCTTCTAGCGATAGTGGTCGAGGCAAGAGCTCGTACCAAGGGTCGGCTTGTG
13842791 CAGTAGTGC
261 CAGTAGTGC
* ** * * *
13842800 TCGAGGCAACTGCCCGCACCGAGGCCCGGCATGTGTCAATGT-TGGTCGAGGTAA-CTGCCCGTA
1 TCGAGGCAACTGCCCACACCGAGGCCCAACATGTGCCAAT-TATGGTCGAGGCAATC-GCCCGCA
* * * * *
13842863 CCAAGGCTCAAAATGTGCCGATGGTGTTCGATGTAATCGCCCGTACCAGGGGCCATCTTATGCCG
64 CCAAGGCCCAAAATGTGCCGATGGTGTTCGACGCAACCGCCCGCACCAGGGGCCATCTTATGCCG
* * * *
13842928 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGTCATCTTGTGCCGATGGTGGTCGAAGCAACCTC
129 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGCTCGAAGCAACCGC
* *
13842993 CCGCACCAAGGGTCAGCTTGT-GCAGATAGTGGTCGAGG
194 CCGCACCAAGGGCCAGCTTCTAGC-GATAGTGGTCGAGG
13843031 TAACCGCCTG
Statistics
Matches: 194, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
268 2 0.01
269 191 0.98
270 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (269 bp):
TCGAGGCAACTGCCCACACCGAGGCCCAACATGTGCCAATTATGGTCGAGGCAATCGCCCGCACC
AAGGCCCAAAATGTGCCGATGGTGTTCGACGCAACCGCCCGCACCAGGGGCCATCTTATGCCGAT
GGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGCTCGAAGCAACCGCCC
GCACCAAGGGCCAGCTTCTAGCGATAGTGGTCGAGGCAAGAGCTCGTACCAAGGGTCGGCTTGTG
CAGTAGTGC
Found at i:13843338 original size:269 final size:269
Alignment explanation
Indices: 13842187--13843362 Score: 619
Period size: 269 Copynumber: 4.4 Consensus size: 269
13842177 CATGTGCCCA
* * * * * * * * * *
13842187 CACCAAGGCCCGGCATGTGCCGATAGTGTTTGAGGCAACCGCCCGCACCAGGGGCCATCTTCTAC
1 CACCAAGGCCCAGCTTGTGCAGATAGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATCTAC
* * * * * ** * *
13842252 CGATGGTGCTCAAGGTAATCGCCCGGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAAC
66 AGATGGTGGTCGAGGTAACCGCTC-GCACCAAGGGCCGGCTTATG-CGATGGTGGTCGAGGTAAC
** * ** * * * * * ** * *
13842317 CGCCCGTAGCAAGGCCCAGCACGTGCCGATGGTGTTTGAAGCAACCG-CCGCACCAGGGGCCAGC
129 CGCCCACACCAAGGCCCAAAATGTGCCGATGGTGATCGAGGTAAGAGCCCGTACCAAGGGCCAGC
* * ** * * * * * *
13842381 ATGTGTCGATGGTGTTCGAGGTAACCACCTGCACCAGGGGCCATCTTCTGCCGAAGGTGGTCGAG
194 TTATACCGATGGTGCTCGAGGAAACCACCCGCACCAAGGGCCATCTTCTGCCGATGGTGGTCGAA
*** *
13842446 GCAAGAGCCCA
259 GCAACCTCCCG
* * * * * * * ** *
13842457 CACCAAAGACCTA-CCTGTGTC-GATGGTGCTCGAGGCAATCACCCACATGAAGGCCTAGCA-CG
1 CACC-AAGGCCCAGCTTGTG-CAGATAGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATC-
* * * * * * * * *** * ** *
13842519 TGCCGATGGTGTTCGAGGCAACTGCCCACACCGA-GGCCCAATATGTGCCGATTATGGTCGAGGC
63 TACAGATGGTGGTCGAGGTAACCGCTCGCACCAAGGGCCGGCT-TATG-CGATGGTGGTCGAGGT
* * * ** * * * ** * * * *
13842583 AATCGCTCGCACCAAGGCCCAGTATGTGCCGATGGTGTTCGACGCAACCGCCTGCACCAGGGGCT
126 AACCGCCCACACCAAGGCCCAAAATGTGCCGATGGTGATCGAGGTAAGAGCCCGTACCAAGGGCC
* ** * * * * * * *
13842648 ATCTTATGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGCTGATGGTGCTC
191 AGCTTATACCGATGGTGCTCGAGGAAACCACCCGCACCAAGGGCCATCTTCTGCCGATGGTGGTC
* *
13842713 GAGGCAACCGCCCG
256 GAAGCAACCTCCCG
*** * ** * * * ** * ** ** * * * *
13842727 CACTGGGGGCCATTTTCTATC-GATGGTGGTCGAGGCAAGAGCTCGTACCAAGGGTCGGCTTGTG
1 CACCAAGGCCCAGCTTGT-GCAGATAGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATCTA
* * * * * * * * * * *
13842791 CAG-TAGTGCTCGAGGCAACTGCCCGCACCGAGGCCCGGCATGTGTCAATGTTGGTCGAGGTAAC
65 CAGATGGTGGTCGAGGTAACCGCTCGCACCAAGGGCCGGCTTATG-CGATGGTGGTCGAGGTAAC
* ** * * * ** * *
13842855 TGCCCGTACCAAGGCTCAAAATGTGCCGATGGTGTTCGATGTAATCGCCCGTACCAGGGGCCATC
129 CGCCCACACCAAGGCCCAAAATGTGCCGATGGTGATCGAGGTAAGAGCCCGTACCAAGGGCCAGC
* * * * * *
13842920 TTATGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGTCATCTTGTGCCGATGGTGGTCGAA
194 TTATACCGATGGTGCTCGAGGAAACCACCCGCACCAAGGGCCATCTTCTGCCGATGGTGGTCGAA
13842985 GCAACCTCCCG
259 GCAACCTCCCG
** * ** * * * ***
13842996 CACCAAGGGTCAGCTTGTGCAGATAGTGGTCGAGGTAACCGCCTGCACTAGGGGCCATTTTCTAC
1 CACCAAGGCCCAGCTTGTGCAGATAGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATCTAC
* * *
13843061 AGATGGTGGTGGAGTTAACCGCTCGTACCAAGGGCCGGCTTATGCGATGGTGGTCGAGGTAACCG
66 AGATGGTGGTCGAGGTAACCGCTCGCACCAAGGGCCGGCTTATGCGATGGTGGTCGAGGTAACCG
** * *
13843126 CCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGGTAAGAGCCCGTACTAAGGGCGAGCTT
131 CCCACACCAAGGCCCAAAATGTGCCGATGGTGATCGAGGTAAGAGCCCGTACCAAGGGCCAGCTT
* * *
13843191 GTACCGATGGTGCTCGAGGAAACCACCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGC
196 ATACCGATGGTGCTCGAGGAAACCACCCGCACCAAGGGCCATCTTCTGCCGATGGTGGTCGAAGC
13843256 AACCGT-CCG
261 AACC-TCCCG
* * *
13843265 CACCAAGGCCCAGCATT-TGCCA-ATTGTGTTCGAGGCAACCGCCCACACCAAGGCCCAGCATGT
1 CACCAAGGCCCAGC-TTGTG-CAGATAGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATCT
* *
13843328 GCCA-ATGGTGGTCGAGGTAACCGCTTGCACCAAGG
64 -ACAGATGGTGGTCGAGGTAACCGCTCGCACCAAGG
13843363 CCCAGCATGC
Statistics
Matches: 695, Mismatches: 196, Indels: 31
0.75 0.21 0.03
Matches are distributed among these distances:
268 6 0.01
269 478 0.69
270 205 0.29
271 6 0.01
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (269 bp):
CACCAAGGCCCAGCTTGTGCAGATAGTGGTCGAGGCAACCGCCCACACCAAGGCCCAGCATCTAC
AGATGGTGGTCGAGGTAACCGCTCGCACCAAGGGCCGGCTTATGCGATGGTGGTCGAGGTAACCG
CCCACACCAAGGCCCAAAATGTGCCGATGGTGATCGAGGTAAGAGCCCGTACCAAGGGCCAGCTT
ATACCGATGGTGCTCGAGGAAACCACCCGCACCAAGGGCCATCTTCTGCCGATGGTGGTCGAAGC
AACCTCCCG
Found at i:13843479 original size:183 final size:180
Alignment explanation
Indices: 13842926--13843793 Score: 555
Period size: 179 Copynumber: 4.8 Consensus size: 180
13842916 CATCTTATGC
* * * ** * * * *
13842926 CGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGTCATCTTGTGCCGATGGTGGTCGAAGCAACC
1 CGATGGTGTTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGCCGATGGTGGTCGAGGTAACC
* ** * * * ** *
13842991 TCCCGCACCAAGGGTCAGCTTGTGCAGA-TAGTGGTCGA--GGTAACCGCCTGCACTAGGGGCCA
66 GCCCGCACCAAGGCCCAGCATGTGCCGATTAG-GTTC-ACCGCCAACCGCCTGCACCAGGGGCCA
* * * * * ** ** * ***
13843053 TTTTCTACAGATGGTGGTGGAGTTAACCGCTCGTACCAAGGGCCGGCTTATG-
129 TCTTGTGCCGATGGT-GTCGAGGCAACCGCTCACACCAAGGCCCGGCACGTGT
* * * * **
13843105 CGATGGTGGTCGAGGTAACCGCCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGGTAAGA
1 CGATGGTGTTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGCCGATGGTGGTCGAGGTAACC
* * * * * * * * * ** * *
13843170 GCCCGTACTAAGGGCGAGCTTGTACCGA-T-GGTGCTCGAGGAAACCACCCGCACCAGGGGCCAT
66 GCCCGCACCAAGGCCCAGCATGTGCCGATTAGGTTCAC-CGCCAACCGCCTGCACCAGGGGCCAT
* * * ** *
13843233 CTTCTGCCGATGGTGGTCGAGGCAACCG-TCCGCACCAAGGCCCAGCATTTGC
130 CTTGTGCCGATGGT-GTCGAGGCAACCGCT-CACACCAAGGCCCGGCACGTGT
* * * *
13843285 CAATTGTGTTCGAGGCAACCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGGTCGAGGTAACC
1 CGATGGTGTTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGCCGATGGTGGTCGAGGTAACC
** * * * *
13843350 GCTTGCACCAAGGCCCAGCATGCTGCCGATTGGCGTTCACCGCCAATCG-CTCGTATCAGGGGCC
66 GCCCGCACCAAGGCCCAGCATG-TGCCGATTAG-GTTCACCGCCAACCGCCT-GCACCAGGGGCC
* * * *
13843414 ATCTTGTGCCGATAGTGCTCGAGGCAACTGCTCACACCAAGGTCCGGCACGTAT
128 ATCTTGTGCCGATGGTG-TCGAGGCAACCGCTCACACCAAGGCCCGGCACGTGT
* ** * * * * *
13843468 CGATGGTGTTCGAGGCAACTGCCGGCACC-AGGGCCATCTTCTACCGATGGTGGTCGAGGGTAAC
1 CGATGGTGTTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGCCGATGGTGGTCGA-GGTAAC
* * * **
13843532 CGCCCGCACCAA-GCCCAGCATATGCTGA-TAGTTTCGTCGCCAACCGCCTGCACCA-GGGCCAT
65 CGCCCGCACCAAGGCCCAGCATGTGCCGATTAGGTTCACCGCCAACCGCCTGCACCAGGGGCCAT
* * * * **
13843594 CTTGTGCCGATGGTGTCGA-GCAACCACCCACACCAAGGGCCGACTGGGTGT
130 CTTGTGCCGATGGTGTCGAGGCAACCGCTCACACCAAGGCCCGGC-ACGTGT
* * * * *
13843645 CGATGGTG-TCGAGGGCAACAACCCACACCAAGGCTCGGCATGTGCTGATGGTGGTTGAGGTAAC
1 CGATGGTGTTCGA-GGCAACAGCCCACACCAAGGCCCAGCATGTGCCGATGGTGGTCGAGGTAAC
* * * * * *
13843709 CGCCCGTACCATGGCCCAGCATGTGCCGA-TGGTGTTCGA-TG-CAACCGCCCGCACCAGGGCCC
65 CGCCCGCACCAAGGCCCAGCATGTGCCGATTAG-GTTC-ACCGCCAACCGCCTGCACCAGGGGCC
*
13843771 ATCTTGTACCGATTGGTGGTCGA
128 ATCTTGTGCCGA-TGGT-GTCGA
13843794 AGTAATCGCC
Statistics
Matches: 539, Mismatches: 127, Indels: 44
0.76 0.18 0.06
Matches are distributed among these distances:
176 24 0.04
177 45 0.08
178 72 0.13
179 169 0.31
180 80 0.15
181 15 0.03
182 34 0.06
183 95 0.18
184 5 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (180 bp):
CGATGGTGTTCGAGGCAACAGCCCACACCAAGGCCCAGCATGTGCCGATGGTGGTCGAGGTAACC
GCCCGCACCAAGGCCCAGCATGTGCCGATTAGGTTCACCGCCAACCGCCTGCACCAGGGGCCATC
TTGTGCCGATGGTGTCGAGGCAACCGCTCACACCAAGGCCCGGCACGTGT
Found at i:13843824 original size:47 final size:45
Alignment explanation
Indices: 13843724--13843869 Score: 116
Period size: 46 Copynumber: 3.2 Consensus size: 45
13843714 GTACCATGGC
* * * * * * **
13843724 CCAGCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACC-AGGG
1 CCAGCTTGTACCGATGGTGGTCGAAGTAAGCGCCTACACCAAGGG
* * *
13843768 CCCATCTTGTACCGATTGGTGGTCGAAGTAATCGCCTGCCACCAAGGG
1 -CCAGCTTGTACCGA-TGGTGGTCGAAGTAAGCGCCT-ACACCAAGGG
* * *
13843816 CCAGCTTGTGCCGATGGTGGTTGAGGTAAGCGCCTACACCAA-GG
1 CCAGCTTGTACCGATGGTGGTCGAAGTAAGCGCCTACACCAAGGG
13843860 CCTAGCTTGT
1 CC-AGCTTGT
13843870 CCTAATGGCG
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
44 4 0.05
45 24 0.29
46 34 0.41
47 16 0.20
48 4 0.05
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (45 bp):
CCAGCTTGTACCGATGGTGGTCGAAGTAAGCGCCTACACCAAGGG
Found at i:13843867 original size:45 final size:45
Alignment explanation
Indices: 13842182--13843869 Score: 580
Period size: 45 Copynumber: 37.5 Consensus size: 45
13842172 CGAGGCATGT
* * * * * *
13842182 GCCCACACCAAGGCCCGGCATGTGCCGATAGTGTTTGAGGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * * ** *
13842227 GCCCGCACCAGGGGCCATCTTCTACCGATGGTGCTCAAGGTAATC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * *
13842272 GCCCGGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACC
1 GCCC-GCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * ** * * *
13842318 GCCCGTAGCAAGGCCCAGCACGTGCCGATGGTGTTTGAAGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * *
13842363 G-CCGCACCAGGGGCCAGCATGTGTCGATGGT-GTTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTT-GAGGTAACC
* * * * * * * * * **
13842407 ACCTGCACCAGGGGCCATCTTCTGCCGAAGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * * * * *
13842452 GCCCACACCAAAGACCTA-CCTGTGTCGATGGTGCTCGAGGCAATC
1 GCCCGCACC-AAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * ** * ** * *
13842497 ACCCACATGAAGGCCTAGCACGTGCCGATGGT-GTTCGAGGCAACT
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTT-GAGGTAACC
* * * ** * * *
13842542 GCCCACACCGAGGCCCA-ATATGTGCCGATTATGGTCGAGGCAATC
1 GCCCGCACCAAGGCCCAGCT-TGTGCCGATGGTGGTTGAGGTAACC
* * *
13842587 GCTCGCACCAAGGCCCAG-TATGTGCCGATGGT-GTTCGACGCAACC
1 GCCCGCACCAAGGCCCAGCT-TGTGCCGATGGTGGTT-GAGGTAACC
* * * * * * * * *
13842632 GCCTGCACCAGGGGCTATCTTATGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * *
13842677 GCCCGCACCAAGGGCCAGCTTGTGCTGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
*** * ** * ** * * **
13842722 GCCCGCACTGGGGGCCATTTTCTATCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * ** * * * * * * *
13842767 GCTCGTACCAAGGGTCGGCTTGTGCAG-TAGTGCTCGAGGCAACT
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * * * *
13842811 GCCCGCACCGAGGCCCGGCATGTGTCAATGTTGGTCGAGGTAACT
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * *** * *
13842856 GCCCGTACCAAGGCTCAAAATGTGCCGATGGT-GTTCGATGTAATC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTT-GAGGTAACC
* * * * * * *
13842901 GCCCGTACCAGGGGCCATCTTATGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
** * * * *
13842946 GCCCGCACCAAGGGTCATCTTGTGCCGATGGTGGTCGAAGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* ** * * *
13842991 TCCCGCACCAAGGGTCAGCTTGTGCAGATAGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * ** * * * * *
13843036 GCCTGCACTAGGGGCCATTTTCTACAGATGGTGGTGGAGTTAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * *
13843081 GCTCGTACCAAGGGCCGGCTTATG-CGATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * **
13843125 GCCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGGTAAGA
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * * * *
13843170 GCCCGTACTAAGGGCGAGCTTGTACCGATGGTGCTCGAGGAAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * * *
13843215 ACCCGCACCAGGGGCCATCTTCTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * *
13843260 GTCCGCACCAAGGCCCAGCATT-TGCCAATTGT-GTTCGAGGCAACC
1 GCCCGCACCAAGGCCCAGC-TTGTGCCGATGGTGGTT-GAGGTAACC
* * * *
13843305 GCCCACACCAAGGCCCAGCATGTGCCAATGGTGGTCGAGGTAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
** * * * ** *
13843350 GCTTGCACCAAGGCCCAGCATGCTGCCGATTGG-CGTTCACCGCCAATC
1 GCCCGCACCAAGGCCCAGCTTG-TGCCGA-TGGTGGTTGA--GGTAACC
* * * * * * * * * * *
13843398 GCTCGTATCAGGGGCCATCTTGTGCCGATAGTGCTCGAGGCAACT
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * ** ** * *
13843443 GCTCACACCAAGGTCCGGCACGTATCGATGGT-GTTCGAGGCAACT
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTT-GAGGTAACC
* * * * * *
13843488 GCCGGCACC-AGGGCCATCTTCTACCGATGGTGGTCGAGGGTAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGA-GGTAACC
* * * * * **
13843533 GCCCGCACCAA-GCCCAGCATATGCTGATAGT--TTCGTCGCCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTT-G-AGGTAACC
* * * * *
13843577 GCCTGCACC-AGGGCCATCTTGTGCCGATGGT-GTCGA-GCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * * * * *
13843619 ACCCACACCAAGGGCC-GACTGGGTGTCGATGGT-GTCGAGGGCAACA
1 GCCCGCACCAAGGCCCAG-CT-TGTGCCGATGGTGGTTGA-GGTAACC
* * * * * *
13843665 ACCCACACCAAGGCTCGGCATGTGCTGATGGTGGTTGAGGTAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
* * * * *
13843710 GCCCGTACCATGGCCCAGCATGTGCCGATGGT-GTTCGATGCAACC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTT-GAGGTAACC
* * * * * *
13843755 GCCCGCACCAGGGCCCATCTTGTACCGATTGGTGGTCGAAGTAATC
1 GCCCGCACCAAGGCCCAGCTTGTGCCGA-TGGTGGTTGAGGTAACC
* * *
13843801 GCCTGCCACCAAGGGCCAGCTTGTGCCGATGGTGGTTGAGGTAAGC
1 GCCCG-CACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
** *
13843847 GCCTACACCAAGGCCTAGCTTGT
1 GCCCGCACCAAGGCCCAGCTTGT
13843870 CCTAATGGCG
Statistics
Matches: 1216, Mismatches: 382, Indels: 90
0.72 0.23 0.05
Matches are distributed among these distances:
42 11 0.01
43 12 0.01
44 176 0.14
45 843 0.69
46 122 0.10
47 33 0.03
48 19 0.02
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTTGAGGTAACC
Found at i:13845016 original size:159 final size:155
Alignment explanation
Indices: 13844692--13845185 Score: 516
Period size: 158 Copynumber: 3.1 Consensus size: 155
13844682 TAAGCATATG
* * * * *
13844692 GAGTTCATTCCCA-GTCTAAGATCAAACCAGATCGAGGGTTGC-GACAGCAGGATAGACAGAACG
1 GAGTTCATT-CCATGTCTAAGA-CTAGCCAGATCGAGGGTT-CTGGCAG--GGATCGACAGCACG
* * * *
13844755 CAG-GGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGATC-GCTGAGCACCCGCA
61 CAGAAGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCA
*
13844818 CGCCCGTTTCGTGGGTTGGCTTAGGCATACA
125 CGCTCGTTTCGTGGGTTGGCTTAGGCATACA
13844849 GAGTTCATTCCATGTCTAAGACCTAGCCAGATCGAGGGTTCTGGCAGTGGATCGACAGCACGCAG
1 GAGTTCATTCCATGTCTAAGA-CTAGCCAGATCGAGGGTTCTGGCAG-GGATCGACAGCACGCAG
** * * * * * *
13844914 AAGGGGACCGGGGTCGATCCCCGGCTTGCATATTTTTCCTCTTCGATCGGCTCAACGCCTGTACG
64 AAGGGGA-C-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACG
* **
13844979 CTCGTTTCGTGAGTTAACTTAGGCATACA
127 CTCGTTTCGTGGGTTGGCTTAGGCATACA
* * * *
13845008 GAGTTCATTCC-TAGTCTAAGATTAGACCGGAAT-GAGGGGTTCGTAGCA-GGATCGACAGCACA
1 GAGTTCATTCCAT-GTCTAAGACTAG-CCAG-ATCGA-GGGTTC-TGGCAGGGATCGACAGCACG
* * * *
13845070 CAGAAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATTGACTGAGCGCCCGCA
61 CAGAAGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCA
*
13845135 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
125 CGCTCGTTTCGTGGGTTGGCTTAGGCATACA
*
13845166 GAGTTCACTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
13845186 CATACGGAGT
Statistics
Matches: 280, Mismatches: 46, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
156 19 0.07
157 42 0.15
158 122 0.44
159 85 0.30
160 8 0.03
161 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
GAGTTCATTCCATGTCTAAGACTAGCCAGATCGAGGGTTCTGGCAGGGATCGACAGCACGCAGAA
GGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACA
Found at i:13845195 original size:26 final size:25
Alignment explanation
Indices: 13845159--13845210 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13845149 GTTGGCTTAG
13845159 GCATACGGAGTTCACTCCATGTCTAA
1 GCATACGGAGTTCACTCCA-GTCTAA
*
13845185 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCACTCCAGTCTAA
13845210 G
1 G
13845211 ATGGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCACTCCAGTCTAA
Found at i:13845416 original size:12 final size:12
Alignment explanation
Indices: 13845399--13845429 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
13845389 GACGAGGGTG
13845399 TGGCAGCAGGAC
1 TGGCAGCAGGAC
13845411 TGGCAGCAGGAC
1 TGGCAGCAGGAC
13845423 TGGCAGC
1 TGGCAGC
13845430 GACATCGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.26, G:0.42, T:0.10
Consensus pattern (12 bp):
TGGCAGCAGGAC
Found at i:13851817 original size:170 final size:171
Alignment explanation
Indices: 13851628--13851942 Score: 413
Period size: 170 Copynumber: 1.8 Consensus size: 171
13851618 CACATGTTCA
* * *
13851628 TTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCCCA-GTCTAAGATCAAACCAGACTGAGGG
1 TTTCATGGGTTGGCTTAGGCATACAG-AGTTCATT-CCATGTCTAAGACCAAACCAGACCGAGGG
* * * *
13851691 TTACGGTAGCAGAACCAGCAGCAGG-ATCGACAGCACGCAG-GGTGGATCGAGCCGATCCCCGGC
64 TTACGGTAGCAGAACCAACAG-AGGTATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGAC
* *
13851754 TTGCGCATTCTGCCTCTTTGACCGGCTAAGCGCCCGTACGCCTG
128 TTACGCATTATGCCTCTTTGACCGGCTAAGCGCCCGTACGCCTG
* * * *
13851798 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCATCCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTT
** * * *
13851863 GTGGTAGCAGGACCAACAGAGGTATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTA
66 ACGGTAGCAGAACCAACAGAGGTATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTA
13851928 CGCATTATGCCTCTT
131 CGCATTATGCCTCTT
13851943 CGGCCAGCCT
Statistics
Matches: 123, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
169 6 0.05
170 82 0.67
171 35 0.28
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (171 bp):
TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTT
ACGGTAGCAGAACCAACAGAGGTATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTA
CGCATTATGCCTCTTTGACCGGCTAAGCGCCCGTACGCCTG
Found at i:13852038 original size:27 final size:27
Alignment explanation
Indices: 13852000--13852052 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
13851990 GTTGACTTAG
* *
13852000 GCATACGGAGTTCATCCCCAGTCTAAA
1 GCATACAGAGTTCATCCACAGTCTAAA
*
13852027 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
13852053 GATTGAATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (27 bp):
GCATACAGAGTTCATCCACAGTCTAAA
Found at i:13852335 original size:159 final size:159
Alignment explanation
Indices: 13852087--13852530 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 159
13852077 GCAGCAGGAT
** * * * * * * * * *
13852087 CGACAGCACGCAGTAGG-GACCGAGCCGATCCCCAGCTTGCGCATTGTGCCTCTCCGACTGGTTG
1 CGACAGCACGCAGGGGGAGACCGGGCCGATCCCCAACTTGAGCATTATGCCTCTCTGGCCGGCTC
* * * *
13852151 AATGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
66 AACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-
*
13852216 AG-TCAGACTGAGGGTTGTGGCAAC-GGGAC
130 AGATCAGACTGAAGGTTGTGGCAACAGGG-C
* * * * * *
13852245 CGGCAGCACGCAGAGGGG-GATCGGGCTGATCCTCAGCTTGCA-CATTATGCCTCT-TCGGTCGG
1 CGACAGCACGCAG-GGGGAGACCGGGCCGATCCCCAACTTG-AGCATTATGCCTCTCT-GGCCGG
* *
13852307 CTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG
63 CTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
** * * *
13852371 ATCAGATCGGACTGAAGGTTGTGGCAGCAGGGT
127 CCCAGATCAGACTGAAGGTTGTGGCAACAGGGC
* * * *
13852404 CGACAGCACGTAGGGGGAGACCGGGCCGATCCCCAACTTGAGTATTCTGCCTCTCTGGCCGGCTG
1 CGACAGCACGCAGGGGGAGACCGGGCCGATCCCCAACTTGAGCATTATGCCTCTCTGGCCGGCTC
* * * * *
13852469 AGCACCCGCGCGCTCGTTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
66 AACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13852531 ATACAGAGTC
Statistics
Matches: 231, Mismatches: 45, Indels: 19
0.78 0.15 0.06
Matches are distributed among these distances:
158 22 0.10
159 202 0.87
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGACAGCACGCAGGGGGAGACCGGGCCGATCCCCAACTTGAGCATTATGCCTCTCTGGCCGGCTC
AACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
GATCAGACTGAAGGTTGTGGCAACAGGGC
Found at i:13853527 original size:159 final size:157
Alignment explanation
Indices: 13853281--13854209 Score: 480
Period size: 159 Copynumber: 5.8 Consensus size: 157
13853271 AGCAGGATCG
* * *
13853281 ACAGCACGGA-AGGGGGACTGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGAC-CGA
1 ACAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGACTC-A
* * ** * *
13853344 GTGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCA
65 GTGCTCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
13853409 GTCAGACCGAGGGTTGTGGCAGCGAGACC
130 GTCAGACCGAGGGTTGTGGCAGCGA-ACC
* *
13853438 AGCAGCACGCAGAGGGGGATTGGGCCGATCCTCGGCTTACGCATTATGCCTCTCTGGCC-AGCTC
1 A-CAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGA-CTC
* * * * * * **
13853502 AGTGCCCCCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCGTTTCCA-ATCTAAG-AT
64 AGTGCTCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAGCCC
* * ** * *
13853565 CAGATCGGATCGAGGGTTACAGTAACAG-GATCG
128 CAG-TCAGACCGAGGGTT---GTGGCAGCGAACC
** * * * * *
13853598 ACAGCACGCAG-GGGTGGATCAGGCCTATCCCCGGCTTACGTATTCTGCCTCTCCGGTCGACTGA
1 ACAGCACGCAGAGGG-GGATTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGACTCA
* * * *
13853662 GCGCTCGCATGCTCATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTA
65 GTGCTCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* *
13853727 GT-TGAACCGAGGGTTGTGGCAGCAGGACCGGC
130 GTCAG-ACCGAGGGTTGTGGCAGC--GAAC--C
* * * ** *
13853759 AGTGGGATCGATAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTGTGCATTATGTCTCTCCG
1 ------A-C---AGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCG
* * * * * * * ** ** ** * *
13853824 ACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTAACTTAGGCATATAGAGGTCATCCCCA-GT
56 GCCGACTCAGTGCTCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
** * * ** * * * *
13853888 CTAAG-ATCAGACTGGATTGAGGGTTGCGACAGCTGGATCG
120 CTAAGCCCCAGTC-AGACCGAGGGTTGTGGCAGC--GAACC
* ** * ** * * ** *
13853928 ACAGCATGCAG-GGGGGACCGGACCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGACTAAG
1 ACAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGACTCAG
* * * * * * *
13853992 CGCCCGTATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAG
66 TGCTCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * * * *
13854057 -CGGAACTAAGTGTTGTGGCAGTGGGATCG
131 TCAG-ACCGAGGGTTGTGGCA--GCGAACC
* * * ** * * * * * *
13854086 ACAGCACGTAGATGGGGATCGAACTGATCCTCGACTTACGCATTATTCCTCTCCAGCCGGCTCAG
1 ACAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGACTCAG
* * * * *
13854151 TGCCCGCATG-TCCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 TGCTCGCACGCT-CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13854210 TATATGGAGT
Statistics
Matches: 593, Mismatches: 139, Indels: 78
0.73 0.17 0.10
Matches are distributed among these distances:
156 5 0.01
157 6 0.01
158 132 0.22
159 307 0.52
160 12 0.02
161 2 0.00
162 6 0.01
163 1 0.00
167 1 0.00
168 1 0.00
170 2 0.00
171 111 0.19
172 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
ACAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGACTCAG
TGCTCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
TCAGACCGAGGGTTGTGGCAGCGAACC
Found at i:13855294 original size:26 final size:26
Alignment explanation
Indices: 13855265--13855317 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13855255 GTTGACTTAG
*
13855265 GCATACGAAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAATCTAA
* *
13855291 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGGTCATCCCCAATCTAA
13855317 G
1 G
13855318 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAATCTAA
Done.