Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 101 of 402
Found at i:13855499 original size:346 final size:346
Alignment explanation
Indices: 13854866--13855508 Score: 817
Period size: 346 Copynumber: 1.9 Consensus size: 346
13854856 CCTCTCTGGC
* * ** *
13854866 CGGCCTCTTCGACCGACTGAGCGCCCGCACGCTTGTTTTGTGGGTTGACTTAGACATACAGAGTT
1 CGGCCTCTTCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGACATACAGAGGT
* * * * * * *
13854931 CATCCCCAGTCTAAGCATATGGAGTTTATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGTGG
66 CATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAATCGAGGGTTGCGG
* * * *** * * *
13854996 CAACAGGATCGACAGCATGTAGGGGGGATCGGGGTGATCCCCGGCTTGCGTATTCTGCCTCTCCG
131 CAACAGGATCGACAGCATGCAGAGGGGACCGGACCGATCCCCGGCTTGAGCATTCTACCTCTCCG
* * ** * * *
13855061 GTCGGTTGAGCGCTCGTACGCTCGTTTCATGCGTTGGCTTAGGCATACGGAGTTAATTCCATGTT
196 GCCGGATGAAAGCCCGTACGCCCGTTTCATGCGTTGGCTTAGGCATACGGAGTTAATTCCATGTC
*
13855126 TAAGCCCCAGTCAAACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGA
261 TAAGCCCCAGTCAAACCAAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGA
13855191 GGGATCGGGCCTCTCTCCGAT
326 GGGATCGGGCCTCTCTCCGAT
* *
13855212 CGGCCTC-TCTGACCTG-CTGAGCGCCCACGCGCTCGTTTCATGGGTTGACTTAGGCATAC-GAA
1 CGGCCTCTTC-GACC-GACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGACATACAG-A
* *
13855274 GGTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATTGGACCGAATCGAGGGTTG
63 GGTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAATCGAGGGTTG
** *
13855339 CGGCAGTAGGATCGACAGCATGCAGAGGGGACCGGACCGATCCCTGGCTTGAGCATTCTACCTCT
128 CGGCAACAGGATCGACAGCATGCAGAGGGGACCGGACCGATCCCCGGCTTGAGCATTCTACCTCT
* * ** * * *
13855404 CTGGCCGGATGAAAGCCCGTATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
193 CCGGCCGGATGAAAGCCCGTACGCCCGTTTCATGCGTTGGCTTAGGCATACGGAGTTAATTCCAT
* *
13855469 GTCTAAGCCCCAG-CGGAACTAAGGGTTGTGGCAGCAGGAC
258 GTCTAAGCCCCAGTC-AAACCAAGGGTTGTGGCAGCAGGAC
13855509 TGGCAGCACG
Statistics
Matches: 248, Mismatches: 45, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
345 4 0.02
346 243 0.98
347 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (346 bp):
CGGCCTCTTCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGACATACAGAGGT
CATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAATCGAGGGTTGCGG
CAACAGGATCGACAGCATGCAGAGGGGACCGGACCGATCCCCGGCTTGAGCATTCTACCTCTCCG
GCCGGATGAAAGCCCGTACGCCCGTTTCATGCGTTGGCTTAGGCATACGGAGTTAATTCCATGTC
TAAGCCCCAGTCAAACCAAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGA
GGGATCGGGCCTCTCTCCGAT
Found at i:13855819 original size:26 final size:26
Alignment explanation
Indices: 13855769--13855820 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13855759 TTCACTTACA
*
13855769 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGACTAAG
*
13855795 CATATGGAGTTCATTCCCA-GACTAAG
1 CATACGGAGTTCATT-CCATGACTAAG
13855821 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGACTAAG
Found at i:13855993 original size:26 final size:26
Alignment explanation
Indices: 13855963--13856015 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13855953 GTTGACTTAG
*
13855963 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
13855989 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
13856015 G
1 G
13856016 ATCAAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:13857052 original size:26 final size:26
Alignment explanation
Indices: 13857023--13857075 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13857013 GTTGACTTAG
*
13857023 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13857049 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13857075 G
1 G
13857076 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13857421 original size:26 final size:26
Alignment explanation
Indices: 13857392--13857444 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13857382 GTTGACTTAG
13857392 GCATAT-AGAGGTCATCCCCAGTCTAA
1 GCATATGA-AGGTCATCCCCAGTCTAA
* *
13857418 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGGTCATCCCCAGTCTAA
13857444 G
1 G
13857445 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATATGAAGGTCATCCCCAGTCTAA
Found at i:13857705 original size:159 final size:158
Alignment explanation
Indices: 13857460--13857760 Score: 469
Period size: 159 Copynumber: 1.9 Consensus size: 158
13857450 ATCGGATTAA
* *
13857460 GGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGACCGATCCCTAGCTTACGCATTCTG
1 GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATCCCTAGCTTACGCATTATG
* * * *
13857525 CCTCTCCGATCGGTTGAGTGCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
66 CCTCTCCGACCGGTTCAGTGCCCATATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
13857590 TCCATGTCTAAGCCCTAGCAAAACTAAG
131 TCCATGTCTAAGCCCTAGCAAAACTAAG
* * * **
13857618 GGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGAT-CCTCGGCTTGTGCATTA
1 GGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGACCGATCCCT-AGCTTACGCATTA
*
13857682 TGCCTCTCCGGCCGGTTCAGTGCCCATATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
64 TGCCTCTCCGACCGGTTCAGTGCCCATATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
13857747 ATTCCATGTCTAAG
129 ATTCCATGTCTAAG
13857761 TAGATAGAGT
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
158 31 0.24
159 98 0.76
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (158 bp):
GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATCCCTAGCTTACGCATTATG
CCTCTCCGACCGGTTCAGTGCCCATATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCTAGCAAAACTAAG
Found at i:13858507 original size:26 final size:26
Alignment explanation
Indices: 13858471--13858521 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13858461 TTGACTTAGG
13858471 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
13858497 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
13858522 GATCGAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:13859557 original size:26 final size:26
Alignment explanation
Indices: 13859521--13859573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13859511 GTTGACTTAG
13859521 GCATATGGAGTTCATACCTAGTCTAA
1 GCATATGGAGTTCATACCTAGTCTAA
**
13859547 GCATATGGAGTTCATTGCTAGTCTAA
1 GCATATGGAGTTCATACCTAGTCTAA
13859573 G
1 G
13859574 ATCGAGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATACCTAGTCTAA
Found at i:13860584 original size:26 final size:26
Alignment explanation
Indices: 13860547--13860625 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
13860537 GTTGACTTAG
* *
13860547 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13860573 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
13860599 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13860625 G
1 G
13860626 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13860902 original size:159 final size:157
Alignment explanation
Indices: 13860599--13861027 Score: 429
Period size: 159 Copynumber: 2.7 Consensus size: 157
13860589 CCTAGTCTAA
* * * * ** * * * **
13860599 GCATACGGAGTTCA-TTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGGC
1 GCATACGGAGTTCAGTACC-AGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGAT
* * * * *
13860663 AGCACGCAGGGGGGACC-AGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCG
65 AGCACGGA-GGGGGACCGA-ACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTCAGCA
* * *
13860727 CCCGCACGCCTGTTTCGTGGGTTGGCTTAG
128 CCCACACGCCTATTTCGTGGGTTGACTTAG
* * *
13860757 GCATAGGGAGTTCAGT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAG-TGCGACCG
1 GCATACGGAGTTCAGTACCA-GTCTAAG-ACCAGATCGGACCGAGGGTTGTGGCAGCAG-GACCG
*
13860819 ATAGCATGCGGAGGGGGACCGAACCGATCCCCGGCTTGTGCTTTCTGCCTCTCCGATCGGCTCAG
63 ATAGCA--CGGAGGGGGACCGAACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTCAG
*
13860884 CACCCACACG-ATCATTTCGTGGGTTGACTTAG
126 CACCCACACGCCT-ATTTCGTGGGTTGACTTAG
* * * * *
13860916 GCATACGGAGTTCATTACCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCAGTACCAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGATA
* * ** *
13860981 GCACGTAGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCT
66 GCACGGAGGGGGACCGAACCGATCCCCGGCTTGTGCATTCTGCCTCT
13861028 TTGACCGGCT
Statistics
Matches: 224, Mismatches: 36, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
157 40 0.18
158 50 0.22
159 126 0.56
160 8 0.04
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCAGTACCAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGATA
GCACGGAGGGGGACCGAACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTCAGCACCC
ACACGCCTATTTCGTGGGTTGACTTAG
Found at i:13862052 original size:513 final size:497
Alignment explanation
Indices: 13860573--13862327 Score: 1547
Period size: 513 Copynumber: 3.4 Consensus size: 497
13860563 CCCAGTCTAA
* * * * * * *
13860573 GCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCT-TTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCAGACCGGAC
* ** * * *
13860638 CGAGGGTTACGACAGTAGGATCGGCAGCACGCAGGGGGGACCAGGCCAATCCCCGGCTTGTGCAT
65 CGAAGGTGGCGACAGTAGGATCGGTAGCACGCAGGGGGGACCGGGCCAAT-CCCGGCTTGCGCAT
13860703 TCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAG
129 TCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATA-GGAG
* * * ** * **
13860767 TTCAGTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGCGACCGATAGCATGCGGAG
192 TTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAAAG
* * * * * * ** *
13860832 GGGGACCGAACCGATCCCCGGCTTGTGCTTTCTGCCTCTCCGATCGGCTCAGCACCCACACGATC
257 GGGGACAG-GCTGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAACACCCGTACGCTC
* *
13860897 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGATCGGATCGAGGGT
321 ATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGT
** * * * *
13860962 TGTGGTAGCAGGATCGATAGCACGTA-GGGGGATCGGGCCGAT-CCTCGGCTTGTGCATTCTGCC
386 TACGGTAGCAGGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCT-GGCTTGTGCATTCTGCC
** * *
13861025 TCTTTGACCGGCTGAGCGTCCAGACACACGCTCGTTTTATGGGTTGGCTTAG
450 TCTTCAACCGGCTGAGC-ACCCG-CACA--CTCGTTTTATGGGTTGGCTTAG
* * * * * * *
13861077 GCATACGAAGTTCATTCCATATCGAAGCATA-CAGATTTCATTTCCAATCTAAGAT-GGAACCGG
1 GCATACGGAGTTCATTCC-TTTCTAAGCATATGA-AGTTCATTCCCAATCTAAGATCAG-ACCGG
* * * * * *
13861140 ACCGAAGGTTGCGACAGTAGGATCGGTAGCACGTATGGGAGGACCGAGCCGATCCCTGGCTTGCA
63 ACCGAAGGTGGCGACAGTAGGATCGGTAGCACGCA-GGGGGGACCGGGCCAATCCC-GGCTTGCG
** * * * ** *
13861205 CATTCCACCTCTCCGACCGGTTAAGCGCTAGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
126 CATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GG
* *
13861270 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATC
190 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGC---A-C
* ** *
13861335 GATAGCATGTAGAGGGGGACCAGGCTGATCCCTGGCTTACGTATTATGCCTCTCCGA-CTGGCT-
251 ----GCA---A-AGGGGGA-CAGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGATC-GGCTC
* * *
13861398 AAGCACCCGTACGCTCCTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGCCTAAGGT
306 AA-CACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGAT
* * *
13861462 CAGATCGGATCGAGGGTTACGGTAGCAAGATCGACAGCACGCAGGGGGGACCAGG-TCGATCCCC
369 CAGATCGGATCGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGACCAGGCT-GATCCCT
* * * * * *
13861526 AGCTTGTGCATTCTACCTCTTCAACCGGCTGAGCACCCGCACACTTGTTTCATGGGTTCGCTTAC
433 GGCTTGTGCATTCTGCCTCTTCAACCGGCTGAGCACCCGCACACTCGTTTTATGGGTTGGCTTAG
* * * *
13861591 ACATATGGAGTTCATTCCTTGTCTAAGCATATGAAGTTCATTCCCAAACTAAGATCAGATCGGAC
1 GCATACGGAGTTCATTCCTT-TCTAAGCATATGAAGTTCATTCCCAATCTAAGATCAGACCGGAC
* *
13861656 CG-AGGCTGGCGGCAGTAAGACCAGTAGCAGGATCGGTAGCACACAGGGGGGACCGGGCTAATCC
65 CGAAGG-T---GGC-----GA-CAGT---AGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCC
* * * * * *
13861720 TCGGCTTACGCATTCTGTCTCTCCGATCGACTGAGCTCCCGCACGCTCATTTCGTCGGTTGGCTT
117 -CGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
**
13861785 AGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTAAGGGTTGTGGCAGCGGGACCG
181 AGGCATAGG-AGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCGGGACCG
* ** * * *
13861849 GCAGCACGCAAAAGGGGATTGGTCTGATCCCCGGCTTGTGCATTATGCCTTTTCGATCGACTCAA
244 GCAGCACGCAAAGGGGGACAGG-CTGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAA
* * * * *
13861914 CGCCCGTACGCTCATTTCGTGGGTTGGCTTATGCATACGAAGTTTATTCCCAGTCTAAGATCGGA
308 CACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * ** *
13861979 CCGGACCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGGGGGGACCAGGCTGATCCCTGGCTT
373 TCGGATCGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCTGGCTT
** * * * *
13862044 ACGCATTCTGCCTCTTCAACCAGCTGAG-GCCCGCACGCTCGTTTTATGGATTGGCTTAG
438 GTGCATTCTGCCTCTTCAACCGGCTGAGCACCCGCACACTCGTTTTATGGGTTGGCTTAG
* * * * * **
13862103 GCATACGGAGTTCATTCCATTACTAAGCATATGGAGATCATTCTCAGTCTAAGATCAGACCTAAC
1 GCATACGGAGTTCATTCC-TTTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCAGACCGGAC
* * *** * * * *
13862168 C-AAGGGTTGCGGTAGCAGGACCAGCAACAAGATCTACAGCACGCAGGGGGGATCGAGTCGATCC
65 CGAA-GG-T---G--GC--GA-CAG---TAGGATCGGTAGCACGCAGGGGGGACCGGGCCAAT-C
* * * * * *
13862232 CCGGCTTGTGCATTTTGCCTCTCCAATCAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTT
116 CCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
*
13862297 AGGCATACGGAGTTCATTCCCAAGTCTAAGC
181 AGGCATA-GGAGTTCATT-CCATGTCTAAGC
13862328 ATATGGAGCT
Statistics
Matches: 999, Mismatches: 192, Indels: 111
0.77 0.15 0.09
Matches are distributed among these distances:
503 1 0.00
504 80 0.08
505 126 0.13
506 1 0.00
508 1 0.00
512 177 0.18
513 197 0.20
514 75 0.08
515 4 0.00
516 6 0.01
517 135 0.14
518 44 0.04
519 2 0.00
521 1 0.00
522 3 0.00
523 4 0.00
524 3 0.00
525 123 0.12
526 16 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (497 bp):
GCATACGGAGTTCATTCCTTTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCAGACCGGACC
GAAGGTGGCGACAGTAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCGGCTTGCGCATTC
TGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCA
TTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAAAGGGGG
ACAGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAACACCCGTACGCTCATTTC
GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGG
TAGCAGGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCTGGCTTGTGCATTCTGCCTCTTCA
ACCGGCTGAGCACCCGCACACTCGTTTTATGGGTTGGCTTAG
Found at i:13862154 original size:26 final size:26
Alignment explanation
Indices: 13862103--13862155 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13862093 ATTGGCTTAG
* *
13862103 GCATACGGAGTTCATTCCATTACTAA
1 GCATACGGAGATCATTCCAGTACTAA
*
13862129 GCATATGGAGATCATTCTCAGT-CTAA
1 GCATACGGAGATCATTC-CAGTACTAA
13862155 G
1 G
13862156 ATCAGACCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGATCATTCCAGTACTAA
Found at i:13862340 original size:27 final size:26
Alignment explanation
Indices: 13862299--13862352 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
13862289 GTTGACTTAG
*
13862299 GCATACGGAGTTCATTCCCAAGTCTAA
1 GCATACGGAGCTCATTCCC-AGTCTAA
* *
13862326 GCATATGGAGCTCATTCTCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
13862352 G
1 G
13862353 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:13862688 original size:159 final size:159
Alignment explanation
Indices: 13862367--13862827 Score: 427
Period size: 159 Copynumber: 2.9 Consensus size: 159
13862357 GATCGGACCG
* * * * * * * *
13862367 AGGGTTACGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCTCC-GGTTTGCACATT
1 AGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGTCGATC-CCTAGCTTACGCATT
*** * * * * *
13862431 TTGCCTCTTCG-GCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
65 ACACCTCTCCGACCAGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* *** *
13862495 TCATTCCATGTTTAAGTCCTTGTCAAACCG
130 TCATTCCATGTCTAAGTCCAAATCAAACCA
* * * *
13862525 AGGGTTATGGCAGC-GAGACCGGCAGCACGCAGAGGGGGACCGAG-CTGAT-CCTCAGTTTGCGC
1 AGGGTTACGGCAGCAG-GACCGACAGCACGCAG-GGGGGACCGAGTC-GATCCCT-AGCTTACGC
* * *
13862587 ATTACACCTCTCCGA-TAGGCTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGG
62 ATTACACCTCTCCGACCAGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGG
**
13862651 AGTTCATTCC-TAGTCTAAGAT-CAAATCGGACCA
127 AGTTCATTCCAT-GTCTAAG-TCCAAATCAAACCA
* * * *
13862684 AGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGGTCCCTGGCTTACGCATTT
1 AGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGTCGATCCCTAGCTTACGCATTA
** * * * * *
13862749 TGCCTCTCTGACCA-GTTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAGGCATACGGAGTT
66 CACCTCTCCGACCAGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
13862813 CATTCCATGTCTAAG
131 CATTCCATGTCTAAG
13862828 CATACGGAGT
Statistics
Matches: 247, Mismatches: 43, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
157 3 0.01
158 114 0.46
159 128 0.52
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGGTTACGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGTCGATCCCTAGCTTACGCATTA
CACCTCTCCGACCAGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGTCCAAATCAAACCA
Found at i:13862800 original size:158 final size:158
Alignment explanation
Indices: 13862326--13862827 Score: 518
Period size: 158 Copynumber: 3.2 Consensus size: 158
13862316 CCAAGTCTAA
* * ** * *
13862326 GCATATGGAGCTCATTCTCA-GTCTAAGATCGGATCGGACCGAGGGTTACGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAAATCGGACCGAGGGTTACGGCAGCAGGATCGAC
* * *
13862390 AGCACGCAGGGGGGACCGGGTCGATCTCC-GGTTTGCACATTTTGCCTCT-TCGGCAGGCTGAGC
65 AGCACGCAGGGGGGACCGAGTCGATC-CCTGGTTTGCGCATTTTGCCTCTCT-GACAGGCTGAGC
* *
13862453 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * *** ** * * *
13862484 GCATAGGGAGTTCATTCCATGTTTAAG-TCCTTGTCAAACCGAGGGTTATGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGAT-CAAATCGGACCGAGGGTTACGGCAGCAG-GATCGA
* *** * * *
13862547 CAGCACGCAGAGGGGGACCGAG-CTGAT-CCTCAGTTTGCGCATTACACCTCTCCGATAGGCTCA
64 CAGCACGCAG-GGGGGACCGAGTC-GATCCCT-GGTTTGCGCATTTTGCCTCTCTGACAGGCTGA
*
13862610 GCACCCGCACACTCGTTTCGTGGGTTGACTTAG
126 GCACCCGCACACTCGTTTCGTGGGTTGGCTTAG
*
13862643 GCATACGGAGTTCATTCC-TAGTCTAAGATCAAATCGGACCAAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAATCGGACCGAGGGTTACGGCAGCAGGATCGAC
* * * *
13862707 AGCACGCAGGGGGGACCGAGTCGGTCCCTGGCTTACGCATTTTGCCTCTCTGACCA-GTTGAGCA
65 AGCACGCAGGGGGGACCGAGTCGATCCCTGGTTTGCGCATTTTGCCTCTCTGA-CAGGCTGAGCA
* * *
13862771 CCCACACACTCATTTCGTGGGTAGGCTTAG
129 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
13862801 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13862828 CATACGGAGT
Statistics
Matches: 277, Mismatches: 52, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
157 6 0.02
158 142 0.51
159 127 0.46
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAATCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGTCGATCCCTGGTTTGCGCATTTTGCCTCTCTGACAGGCTGAGCACC
CGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:13862837 original size:26 final size:26
Alignment explanation
Indices: 13862801--13862853 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13862791 GTAGGCTTAG
13862801 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
13862827 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
13862853 G
1 G
13862854 ACCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:13863560 original size:26 final size:26
Alignment explanation
Indices: 13863524--13863576 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13863514 GTTGGCTTAG
13863524 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13863550 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13863576 G
1 G
13863577 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13863957 original size:721 final size:724
Alignment explanation
Indices: 13862621--13863958 Score: 1659
Period size: 721 Copynumber: 1.9 Consensus size: 724
13862611 CACCCGCACA
* * *
13862621 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAATCGGACCAAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGAACCAAG
* * * * * * *
13862686 GGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGGTCCCTGGCTTACGCATTTTG
66 GGTTACAGCAGCAAGATCGACAGCACACAGGGGGGACAGAGTCGGTCCCCGGCCTACGCATTCTG
* *
13862751 CCTCTCTGACCAGTTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAGGCATACGGAGTTCAT
131 CCTATCTGACCAGCTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAGGCATACGGAGTTCAT
* * *
13862816 TCCATGTCTAAGCATACGGAGTTCATTCCCATTCTAAGACCGAATCGGACCAAGGGTTGCGACAG
196 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACAGAACCGGACCAAGGGTTGCGACAG
** * * * * *
13862881 CAGGACCAGCAGCAAGATTGATAGCACGTAAGGAGGGATCGGGCTGATCCACGGCTTGCGCATTT
261 CAGGACCAGCAGCAAGATCAACAGCACGCAAGGAGGGACCGGGCTGATCCACAGCTTGCACATTT
* **
13862946 TGCCTCTTCGGCCAACTGAGCACACGCGCACTCGTTCCGTGGGTTAACTTAGGCATACAGAGTTC
326 TACCTCTTCGGCCAACTGAGCACACGAACACTCGTTCCGTGGGTTAACTTAGGCATACAGAGTTC
** * * * *
13863011 ATTCCATGTCTAAGCCCCAGCCAGACTGAGTGTTGTGGCAGCAGGACCGGTAGTGGAATCGACAG
391 ATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGCAGCAGGACAGGTAGCGGAATCGACAG
* * * * *
13863076 CATGCAGAGGGGGATCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTCCGATCGGCCTCTCCGA
456 CACGCAGAGAGGGATCGGCTCGATCCCCAGCTTGCGCATTATGCCTCTCAGATCGGCCTCTCCGA
* * * *
13863141 CCGGTTGAGCTCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATCGCCAGTCT
521 CCGATTGAGCTCCTGCACGCTTGTTTCATGGGTTGACTTAGGCAGACAGAGTTCATCCCCAGTCT
*
13863206 AAGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGCGTTACGGTAGCGAGACTGA
586 AAGCATACAGAGTTCATTCCCAACCTAAGATCGGATCGGATCGAGCGTTACGGTAGCGAGACTGA
13863271 CAGCATGCAGAAGGGGATCAGATCGATCCCTGGCTTGTGCATTATGTGTCTCCGGTCGACTCAAT
651 CAGCATGCAGAAGGGGATCAGATCGATCCCTGGCTTGTGCATTATGTGTCTCCGGTCGACTCAAT
13863336 GCCCGAACG
716 GCCCGAACG
* ** *
13863345 CTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAATCTAAGATCGGA-CTGAACCGA
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATC-GAACCAA
* *
13863409 GGGTTGCAGTAGCAAGATCGACAGCACACAGGGGGGATCAG-GTCGGTCCCCGGCCTACGCATTC
65 GGGTTACAGCAGCAAGATCGACAGCACACAGGGGGGA-CAGAGTCGGTCCCCGGCCTACGCATTC
* ** * ** *
13863473 TGCCTATC-GGCC-GACTGAGCACCCGTACTCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
129 TGCCTATCTGACCAG-CTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAGGCATACGGAGTT
* * * *
13863536 CATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCGGATCGAGGGTTGTG
193 CATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-CAGAACCGGACCAAGGGTTGCG
* * ** * * *
13863600 GCAGTAGGACCAGTGGTAGGATCAACAGCACGC-A-GAGGGGACCAGG-TCGATCC-CAAGCTTG
257 ACAGCAGGACCAGCAGCAAGATCAACAGCACGCAAGGA-GGGACCGGGCT-GATCCAC-AGCTTG
* ** ** **
13863661 CACATTTTACCT-TTCCGGCCAGCCTCTTGC-C-CGAACACTCGTTTTGTGGGTTGCCTTAGGCA
319 CACATTTTACCTCTT-CGGCCA-ACT-GAGCACACGAACACTCGTTCCGTGGGTTAACTTAGGCA
* * *
13863723 TA-AGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGCCAAGGGTTATGGTAGCAGGACAGGTAGC
381 TACA-GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGCAGCAGGACAGGTAGC
* *
13863786 GGGATC-ATCAGCACGCAGAGAGGGATCGAGCT-GATCCCCGGCTTGCGCATTATGCCTCTTCAG
445 GGAATCGA-CAGCACGCAGAGAGGGATCG-GCTCGATCCCCAGCTTGCGCATTATGCCTC-TCAG
* ** * *
13863849 -TTGGCCTCTTTGGCCGATTGAGCGTCC-GCACGCTTGTTTCATGGGTTGACTTAGGCATACAGA
507 ATCGGCCTCTCCGACCGATTGAGC-TCCTGCACGCTTGTTTCATGGGTTGACTTAGGCAGACAGA
* *
13863912 GTTTATCCCCAGTCTAAGCATACAGAGTTCATTTCCAACCTAAGATC
571 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAACCTAAGATC
13863959 AGACCAGACC
Statistics
Matches: 515, Mismatches: 84, Indels: 33
0.81 0.13 0.05
Matches are distributed among these distances:
720 1 0.00
721 171 0.33
722 97 0.19
723 126 0.24
724 118 0.23
725 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (724 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGAACCAAG
GGTTACAGCAGCAAGATCGACAGCACACAGGGGGGACAGAGTCGGTCCCCGGCCTACGCATTCTG
CCTATCTGACCAGCTGAGCACCCACACACTCATTTCGTGGGTAGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACAGAACCGGACCAAGGGTTGCGACAG
CAGGACCAGCAGCAAGATCAACAGCACGCAAGGAGGGACCGGGCTGATCCACAGCTTGCACATTT
TACCTCTTCGGCCAACTGAGCACACGAACACTCGTTCCGTGGGTTAACTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGCAGCAGGACAGGTAGCGGAATCGACAG
CACGCAGAGAGGGATCGGCTCGATCCCCAGCTTGCGCATTATGCCTCTCAGATCGGCCTCTCCGA
CCGATTGAGCTCCTGCACGCTTGTTTCATGGGTTGACTTAGGCAGACAGAGTTCATCCCCAGTCT
AAGCATACAGAGTTCATTCCCAACCTAAGATCGGATCGGATCGAGCGTTACGGTAGCGAGACTGA
CAGCATGCAGAAGGGGATCAGATCGATCCCTGGCTTGTGCATTATGTGTCTCCGGTCGACTCAAT
GCCCGAACG
Found at i:13864440 original size:26 final size:26
Alignment explanation
Indices: 13864404--13864456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13864394 GTTGGCTGAG
13864404 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13864430 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13864456 G
1 G
13864457 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13865069 original size:870 final size:873
Alignment explanation
Indices: 13863327--13865327 Score: 2269
Period size: 869 Copynumber: 2.3 Consensus size: 873
13863317 TGTCTCCGGT
*
13863327 CGACTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAATCTA
1 CGACTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * * * * *
13863392 AGATCGGACTGAACCGAGGGTTGC-AGTAGCAAGATCGACAGCACACAGGGGGGATCAGGTCGGT
66 AGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGACAGCACGCAGAGGGGACCAGGTCGGT
* * * *
13863456 CCCCGGCCTACGCATTCTGCCTATCGG-CCGACTGAGCACCCGTACTCTTGTTTCGTGGGTTGGC
130 CCCCGGCTTACGCATTCTGCCTTTCGGTCCG-TTGAGCACCCGTACGCTTGTTTCGTGGGTTGGC
* * *
13863520 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
194 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACA
* * ** * *
13863585 GGATCGAGGGTTGTGGCAGTAGGACCAGTGGTAGGATCAACAGCACGCAGAGGGGACCAGGTCGA
259 GGATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCAACAGCACACAGAGGGGACCAGGTCGA
* * * ** *
13863650 TCCCAAGCTTGCACATTTTACCTTTCCGGCCAGCCTCTTGCCCGAACACTCGTTTTGTGGGTTGC
324 TCCCAAGCTTGCACATTCTACCTCTCCGACCAGCCTAGTGCCCGAACACTCGTTTTGTCGGTTGC
* *
13863715 CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGCCAAGGGTTATGGTAGCAGGACA
389 CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGACCAAGGGTTATGGT---AGGACA
* * * * *
13863780 GGTAGCGGGATCATCAGCACGCAGAGAGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCT
451 GGTA--GGGATCAGCAGCACACAGAGAGGGATCGAGCTAATCCCCGACTTACGCATTATGCCTCT
* * * **** * * * *
13863845 TCAGTTGGCCTCTTTGGCCGATTGAGCGTCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACA
514 CCAGTCGACCTCTCCAACCGACTGAGCGTCCGCACACTCGTTTCATGGGTTGACTTAGGCAAACA
*
13863910 GAGTTTATCCCCAGTCTAAGCATACAGAGTTCATTTCCAACCTAAGATCAGACCAGACCGAGGGT
579 GAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCAACCTAAGATCAGACCAGACCGAGGGT
* ** ** * * **
13863975 TATGACCGTAAGGTCAGCAGCACATAGGGGGACCGGGCGGATCCTCGGCTTGCGTATTCTGCCTC
644 TACGACCACAACATCAGCAGCACATAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTC
* * *
13864040 TCCCATCGGCTGAATGCCCGCACGTCCGTTTCATGGGTTGGCTTACTCATAGGGAGTTCATTCCA
709 TCCCATCGGCTGAACGCCCGCACGACCGTTTCATGGGTTGGCTTACGCATAGGGAGTTCATTCCA
* * *
13864105 TGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAAGACCGGTAGCACGCAGAGCAGGACCGA
774 TGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAAGACCGGTAACACGCAGAGCAGGACCGA
* * * * *
13864170 GTCGATCCCCAGCTTGCTCATTATGCCTCTTCGAC
839 GCCAATCCCCAGCTTACGCATTATGCCTCTTCAAC
* * *
13864205 CGACTCAATGCCCGAACACTCGTTTCGTGGGTTGACTAAGGCATATGGAGTTCATTCCCAATCTA
1 CGACTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
** * * * *
13864270 AGATCACACCGGACCGAGGGTTACGACAGCAGGATTGACAGCACGCAGTAAGGGACCAAGTCGGT
66 AGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG-AGGGGACCAGGTCGGT
* * * *
13864335 CCCCGGCTTACGCATTTTGCCTCTTCGGTCCGTTGAGCGCCCGCACGCTTATTTCGTGGGTTGGC
130 CCCCGGCTTACGCATTCTGCCT-TTCGGTCCGTTGAGCACCCGTACGCTTGTTTCGTGGGTTGGC
* *
13864400 TGAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAATC
194 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAA-C
** * * * *
13864465 AGGATCGAGGGTTGCGGCAGCAGGACCAGCAGCA-GATCGGCATCACATAGGGGGGATC-GAGTC
258 AGGATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCAACAGCACACAGAGGGGACCAG-GTC
* * * * * ** * *
13864528 GATCCCCAGCTTGCGCATTCTGCGTCTCTGACC-GGTTGAGTGCCCGTACGCTCGTTTTGTCGGT
322 GATCCCAAGCTTGCACATTCTACCTCTCCGACCAGCCT-AGTGCCCGAACACTCGTTTTGTCGGT
* *
13864592 TGGCTTAGGCATACA-GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG-T-T-GT-GG-
386 TGCCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGCCCCAGCC-GACCAAGGGTTATGGTAGGA
* *
13864651 CA-GTA-GGATCAGCAGCACACAGAGGGGGATCGGGCTAATCCCCGACTTACGCATTATGCCTCT
449 CAGGTAGGGATCAGCAGCACACAGAGAGGGATCGAGCTAATCCCCGACTTACGCATTATGCCTCT
* * * * **
13864714 CC-GATCGACCTGTCCAATCGGCTGAGCG-CTCGCATACTCGTTTTGTGGGTTGACTTAGGCAAA
514 CCAG-TCGACCTCTCCAACCGACTGAGCGTC-CGCACACTCGTTTCATGGGTTGACTTAGGCAAA
** *** *
13864777 TGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA-TTCCTAGTGTAAGATC-GAACTAGACCGA
577 CAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCC-AACCTAAGATCAG-ACCAGACCGA
* *
13864840 GGGTTGCGACCACAACATC-GACAGCACGTAGGTGGGACCGGGCCGATCCCCGGCTTGCACATTC
640 GGGTTACGACCACAACATCAG-CAGCACATAGG-GGGACCGGGCCGATCCCCGGCTTGCACATTC
* * * *
13864904 TGCCTCT-TCAGTCGGCTGAGCGTCCGCAC-ACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGT
703 TGCCTCTCCCA-TCGGCTGAACGCCCGCACGACC-GTTTCATGGGTTGGCTTACGCATAGGGAGT
* ** *
13864967 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCGGGACCGGTAACACGCAGAGG
766 TCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAAGACCGGTAACACGCAGAGC
* * * * *
13865032 GGGATCGAGCCAATCCTCGGCTTACGCATTATGCCTCTTCAAT
831 AGGACCGAGCCAATCCCCAGCTTACGCATTATGCCTCTTCAAC
* * * * * * *
13865075 CGGCTCAAAGCCCGCACGCTTGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
1 CGACTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * * * * * **
13865140 AGATTGGATCAGACCGTGGGTTGCGACAGCAGGATCGATAGCATGTAGAGGGGACCAGGTCAATC
66 AGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGACCAGGTCGGTC
*** * * * * * *
13865205 CCTAACTTGCGCATTCTACCTTTCCGGTCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTAGCT
131 CCCGGCTTACGCATTCTGCCTTT-CGGTCCGTTGAGCACCCGTACGCTTGTTTCGTGGGTTGGCT
* *
13865270 TAGGCATATGGAGTTCATTCCATGTCAAAGCATACGGAGTTCATTCCCAGTCTAAGAT
195 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
13865328 TTTGAGCCAC
Statistics
Matches: 936, Mismatches: 169, Indels: 45
0.81 0.15 0.04
Matches are distributed among these distances:
868 10 0.01
869 285 0.30
870 260 0.28
872 3 0.00
873 2 0.00
874 2 0.00
878 100 0.11
879 37 0.04
880 197 0.21
881 40 0.04
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (873 bp):
CGACTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
AGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGACCAGGTCGGTC
CCCGGCTTACGCATTCTGCCTTTCGGTCCGTTGAGCACCCGTACGCTTGTTTCGTGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACAGG
ATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCAACAGCACACAGAGGGGACCAGGTCGATC
CCAAGCTTGCACATTCTACCTCTCCGACCAGCCTAGTGCCCGAACACTCGTTTTGTCGGTTGCCT
TAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGACCAAGGGTTATGGTAGGACAGGTAG
GGATCAGCAGCACACAGAGAGGGATCGAGCTAATCCCCGACTTACGCATTATGCCTCTCCAGTCG
ACCTCTCCAACCGACTGAGCGTCCGCACACTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTTCCAACCTAAGATCAGACCAGACCGAGGGTTACGACC
ACAACATCAGCAGCACATAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCCATC
GGCTGAACGCCCGCACGACCGTTTCATGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTATGGCAGCAAGACCGGTAACACGCAGAGCAGGACCGAGCCAATC
CCCAGCTTACGCATTATGCCTCTTCAAC
Found at i:13868832 original size:26 final size:26
Alignment explanation
Indices: 13868796--13868848 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13868786 GTTGGCTTAG
13868796 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13868822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13868848 G
1 G
13868849 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13869032 original size:83 final size:83
Alignment explanation
Indices: 13868893--13869061 Score: 275
Period size: 83 Copynumber: 2.0 Consensus size: 83
13868883 AGCAGCAAGA
* *
13868893 TCGATAGCACGTAGGGGGGACCAGGTTGATCCTCGGCTTGCGTATTCTACCTCTCCGACCGGTTG
1 TCGATAGCACGTAGGAGGGACCAGGTCGATCCTCGGCTTGCGTATTCTACCTCTCCGACCGGTTG
13868958 AGCACCCGCACGCTCATT
66 AGCACCCGCACGCTCATT
* * * *
13868976 TCGATAGCATGTTGGAGGGACCAGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCCGATCGGTTG
1 TCGATAGCACGTAGGAGGGACCAGGTCGATCCTCGGCTTGCGTATTCTACCTCTCCGACCGGTTG
*
13869041 AGCACCCGCACGTTCATT
66 AGCACCCGCACGCTCATT
13869059 TCG
1 TCG
13869062 TGGGTTAGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.16, C:0.30, G:0.28, T:0.26
Consensus pattern (83 bp):
TCGATAGCACGTAGGAGGGACCAGGTCGATCCTCGGCTTGCGTATTCTACCTCTCCGACCGGTTG
AGCACCCGCACGCTCATT
Found at i:13869288 original size:26 final size:26
Alignment explanation
Indices: 13869259--13869311 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13869249 GTTGACTTAG
13869259 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13869285 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13869311 G
1 G
13869312 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13869632 original size:26 final size:25
Alignment explanation
Indices: 13869602--13869651 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
13869592 TGGCTTAGGC
*
13869602 ATACGGAGTTCATTCCATGTCTAAGT
1 ATACGAAGTTCATTCCA-GTCTAAGT
13869628 ATACGAAGTTCATTCCAGTCTAAG
1 ATACGAAGTTCATTCCAGTCTAAG
13869652 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (25 bp):
ATACGAAGTTCATTCCAGTCTAAGT
Found at i:13869856 original size:26 final size:26
Alignment explanation
Indices: 13869809--13869861 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13869799 GTTAACTTAG
* *
13869809 GCATACATAGTTAATCCTCAGTTTAA
1 GCATACAGAGTTAATCCTCAGTCTAA
*
13869835 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTT-AATCCTCAGTCTAA
13869861 G
1 G
13869862 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATCCTCAGTCTAA
Found at i:13870579 original size:26 final size:26
Alignment explanation
Indices: 13870549--13870601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13870539 GTTGACTTAG
*
13870549 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
*
13870575 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
13870601 G
1 G
13870602 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:13871081 original size:26 final size:26
Alignment explanation
Indices: 13871047--13871102 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13871037 TGGGTTGGCT
*
13871047 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACGAAGTTCATTCCTA-GTC
*
13871073 TAAGGATACGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATTCCTAGTC
13871099 TAAG
1 TAAG
13871103 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCTAGTC
Found at i:13871469 original size:183 final size:184
Alignment explanation
Indices: 13871142--13871485 Score: 469
Period size: 183 Copynumber: 1.9 Consensus size: 184
13871132 GGACCAGCAA
* * * * *
13871142 CAGGATCGACAGCATGCAAGGGGGACCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGGTT
1 CAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCT
* * *
13871207 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCGTTCTAA
66 AGCTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAAAGTTCATCCCCGTTCTAA
13871272 GCATACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAG
131 GCATACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAG
* * * * * *
13871326 CAGGATCGGCAGCACGC-AGGGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCT
1 CAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCT
* * * *
13871390 AGCTGAGCGCCCGCATGCTCATTTCATGGGTTAACTTAGGCATACAGATTTCATCCCCAG-TCTA
66 AGCTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAAAGTTCATCCCC-GTTCTA
* *
13871454 AGCAGT-CGGAGTTCATTCCCAGTCTAAGATCA
130 AGCA-TACGAAGTTCATTCACAGTCTAAGATCA
13871486 AATCGGATGA
Statistics
Matches: 138, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
183 121 0.88
184 17 0.12
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.24
Consensus pattern (184 bp):
CAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCT
AGCTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAAAGTTCATCCCCGTTCTAA
GCATACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAG
Found at i:13871523 original size:183 final size:182
Alignment explanation
Indices: 13871142--13871568 Score: 448
Period size: 183 Copynumber: 2.3 Consensus size: 182
13871132 GGACCAGCAA
* * * * * * *
13871142 CAGGATCGACAGCATGCAAGGGGGACCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGGTT
1 CAGGATCG-CAGCACGC-AGGGGGACCGAGCAGATCCCCGACTTACGCATTCTGCCTCTCCGGCT
* * *
13871207 GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCGTTCTAA
64 AGCTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAAAGTTCATCCCCGTTCTAA
* * ***
13871272 GCATACGAAGTTCATTCACAGTCTAAGATCAGACCAGACCGAAGGTTGCGGTAG
129 GCATACGAAGTTCATTCACAGTCTAAGATCAAACCAGACCGAAGGTTACAACAG
* * * *
13871326 CAGGATCGGCAGCACGCAGGGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTA
1 CAGGATC-GCAGCACGCAGGGGGACCGAGCAGATCCCCGACTTACGCATTCTGCCTCTCCGGCTA
* * * *
13871391 GCTGAGCGCCCGCATGCTCATTTCATGGGTTAACTTAGGCATACAGATTTCATCCCCAG-TCTAA
65 GCTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAAAGTTCATCCCC-GTTCTAA
* * * * *
13871455 GCAGT-CGGAGTTCATTCCCAGTCTAAGATCAAATCGGA-TGAAGGGTTACAACAG
129 GCA-TACGAAGTTCATTCACAGTCTAAGATCAAACCAGACCGAA-GGTTACAACAG
* ** * *
13871509 TAGGATCAGCAGCACATAGAGGGGACCGAGCAGATTCCC-AGCTTACGCATTCGGCCTCTC
1 CAGGATC-GCAGCACGCAG-GGGGACCGAGCAGATCCCCGA-CTTACGCATTCTGCCTCTC
13871569 TGACCTGTTG
Statistics
Matches: 200, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
182 3 0.01
183 148 0.74
184 48 0.24
185 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (182 bp):
CAGGATCGCAGCACGCAGGGGGACCGAGCAGATCCCCGACTTACGCATTCTGCCTCTCCGGCTAG
CTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAAAGTTCATCCCCGTTCTAAGC
ATACGAAGTTCATTCACAGTCTAAGATCAAACCAGACCGAAGGTTACAACAG
Found at i:13871825 original size:159 final size:158
Alignment explanation
Indices: 13871593--13871957 Score: 358
Period size: 159 Copynumber: 2.3 Consensus size: 158
13871583 CCCATACACC
* * * * * *
13871593 CGTTTCATGGGTTGGCTTAGGCGTAGAGAGTTCATTCCATGTCTAAGACCCAGCTAGACCGATGG
1 CGTTTCGTGGGTTGGCTTAGGCATAG-GAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGG
** * * ** * * **
13871658 TTGTGGCAGCGGGATAGGCAGCACATGGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGC
65 TTACGGCAGCAGGATAGACAGCACACAGAGAGGGACCAGGCCGACCCCCAACTTGCGCATTATGC
* * * *
13871723 CTCTCCG-GTCGGCTCAGTGCCCGAAC-GCT
130 CTCTCCGACT-GACTAAGGGCCCGAACAG-T
* * *
13871752 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAACCAGACTGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCAT-GTCTAAGACCAAACCAGACCGAGG
* * * * * * * * *
13871816 GTTACGGCAGTAGGATCGACAGCACACAGTGAGGGATCGGGTCGGCCCCCAACTTGCGGATTCTG
64 GTTACGGCAGCAGGATAGACAGCACACAGAGAGGGACCAGGCCGACCCCCAACTTGCGCATTATG
*
13871881 CCTCTCCGACTGACTAAGGGCTCGAACAGT
129 CCTCTCCGACTGACTAAGGGCCCGAACAGT
13871911 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAG
13871958 CATACGGAGT
Statistics
Matches: 166, Mismatches: 35, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
158 1 0.01
159 161 0.97
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGT
TACGGCAGCAGGATAGACAGCACACAGAGAGGGACCAGGCCGACCCCCAACTTGCGCATTATGCC
TCTCCGACTGACTAAGGGCCCGAACAGT
Found at i:13871967 original size:26 final size:26
Alignment explanation
Indices: 13871931--13871983 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13871921 GTTGGCTTAG
* *
13871931 GCATATGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCAGTCCCA-GTCTAA
13871957 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
13871983 G
1 G
13871984 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:13872362 original size:26 final size:26
Alignment explanation
Indices: 13872326--13872375 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
13872316 GGCTTAGGCA
*
13872326 TACGGAGTTCA-TTCCATGTCTAAGCG
1 TACGGAGTTCACTCCCA-GTCTAAGCG
*
13872352 TACGGGGTTCACTCCCAGTCTAAG
1 TACGGAGTTCACTCCCAGTCTAAG
13872376 AGTTTGAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCACTCCCAGTCTAAGCG
Found at i:13873078 original size:25 final size:26
Alignment explanation
Indices: 13873043--13873092 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
13873033 GTTGACTTAG
13873043 GCATACAAAGTTCA-TCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
* *
13873068 GCATACGAAGTTCATTCCTAGTCTA
1 GCATACAAAGTTCATTCCCAGTCTA
13873093 GGATTGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:13873399 original size:159 final size:159
Alignment explanation
Indices: 13873216--13873567 Score: 382
Period size: 159 Copynumber: 2.2 Consensus size: 159
13873206 CGTCTTGTGC
* * * * *
13873216 GTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGT
1 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAAACCGAGGGTTGTGGCAGC
* * * * *
13873281 GGGATCGATAGCACGCAAAAGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCTAGCC
66 AGGATCGACAGCACGCAAAAGGGGATCGGGCCGATCCCCGACTTACGCATTATACCTCTCTAGCC
* *
13873346 GGCTCAGCACCCGAACGCTCATTTCGTGG
131 GGCTCAGCACCCGAACGCTCATTTCATGA
* * * * * * ** *
13873375 GTTGACTTAGTCATACAGAATTCATTCCCA-ATCTAAGATCGAACCGGACCGAGGGTTGTGGTAG
1 GTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAACCAAACCGAGGGTTGTGGCAG
* ** * * * *
13873439 CAGGATTGACAGCACGCAAGGGGGGATCGGGTCGGTCCCCGACTTATGCATTATACCTCTCTGGC
65 CAGGATCGACAGCACGCAAAAGGGGATCGGGCCGATCCCCGACTTACGCATTATACCTCTCTAGC
* * * * *
13873504 CGGTTGAGCCCCCGCACGCTCGTTTCATGA
130 CGGCTCAGCACCCGAACGCTCATTTCATGA
*
13873534 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
1 GTTGACTTAGGCATACGGAGTTCATTCCATGTCT
13873568 TAGCATATGG
Statistics
Matches: 153, Mismatches: 38, Indels: 4
0.78 0.19 0.02
Matches are distributed among these distances:
158 3 0.02
159 147 0.96
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (159 bp):
GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAAACCGAGGGTTGTGGCAGC
AGGATCGACAGCACGCAAAAGGGGATCGGGCCGATCCCCGACTTACGCATTATACCTCTCTAGCC
GGCTCAGCACCCGAACGCTCATTTCATGA
Found at i:13873781 original size:26 final size:26
Alignment explanation
Indices: 13873752--13873829 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
13873742 GTTGACTTAG
*
13873752 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13873778 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13873804 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13873830 CATCAGACGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13874871 original size:26 final size:26
Alignment explanation
Indices: 13874841--13874893 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13874831 GTTGACTTAG
13874841 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
* *
13874867 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
13874893 G
1 G
13874894 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:13875346 original size:158 final size:156
Alignment explanation
Indices: 13874867--13875505 Score: 484
Period size: 158 Copynumber: 4.1 Consensus size: 156
13874857 CCCAGTCTAA
* * * *
13874867 GCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCGAAGGTTG-TGCAGCAGGATCG-CA
* * * * * * * ** *
13874932 GCATGCAGAGGGGACCAAGTCGATCCCCGAC-TAGTGCATTCTGCCTCTCTGGCCTGCTGAGCCC
64 GCACGCAGAGGGGACCGAGCCGATCCCTGACTTA-CGCATTCTGCCTCTCCGACAGGCTGAGCGC
* * *
13874996 CCGTATCCCCATTTCGTGGGTTGGCTTAG
128 CCGCATGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * * * *
13875025 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CTGGACTGAGGGTTGTGGCAGCAGGACCTG
1 GCATACGAAGTTCATTCCCA-ATCTAAGATC-AGACCGAACCGAAGGTTGT-GCAGCAGGATC-G
* * * * * * * * *
13875088 TAGCACGTAGAAAGGGACCGGGCCGATCCC-CAGCTTGCGCATTATGCCTCTCCGGTC-GGCTCA
62 CAGCACGCAG-AGGGGACCGAGCCGATCCCTGA-CTTACGCATTCTGCCTCTCC-GACAGGCTGA
* ** * * *
13875151 GCGCCTGCGGGCTCGTTTCATGGGTTGACTTAG
124 GCGCCCGCATGCTCATTTCGTGGGTTGGCTTAG
* *
13875184 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCGAAGGATGCTGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCGAAGGTTG-TGCAGCAGGATCG-CA
* * * *
13875249 GCACGTAGGGGGGACCGAGCCGATCCCTGACTTACGTATTCTGCCTCTCCGATAGGCTGAGCGCC
64 GCACGCAGAGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGACAGGCTGAGCGCC
* *
13875314 CACATGCTCATTTCGTGGGTTGGCTTAT
129 CGCATGCTCATTTCGTGGGTTGGCTTAG
* ** * *
13875342 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCG-AGG--GT--TGC---A--GCAGC
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCGAAGGTTGTGCAGCAGGATCGCAGC
* * **
13875397 ACGCAGGGGGGATCGAGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACCA-GCTGAGCGCCC
66 ACGCAGAGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGA-CAGGCTGAGCGCCC
*
13875461 GCACGCTCATTTCGTGGGTTGGCTTAG
130 GCATGCTCATTTCGTGGGTTGGCTTAG
*
13875488 GCATGCCG-AGTTCATTCC
1 GCAT-ACGAAGTTCATTCC
13875506 TTGTCTAAGC
Statistics
Matches: 385, Mismatches: 80, Indels: 44
0.76 0.16 0.09
Matches are distributed among these distances:
146 98 0.25
147 4 0.01
149 1 0.00
152 2 0.01
154 1 0.00
155 1 0.00
157 7 0.02
158 155 0.40
159 109 0.28
160 7 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGAACCGAAGGTTGTGCAGCAGGATCGCAGC
ACGCAGAGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGACAGGCTGAGCGCCCG
CATGCTCATTTCGTGGGTTGGCTTAG
Found at i:13875703 original size:26 final size:26
Alignment explanation
Indices: 13875672--13875724 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13875662 GTTGACTTAG
13875672 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
***
13875698 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
13875724 G
1 G
13875725 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTAA
Found at i:13876013 original size:158 final size:158
Alignment explanation
Indices: 13875836--13876197 Score: 399
Period size: 157 Copynumber: 2.3 Consensus size: 158
13875826 CCCGCAAGCC
* * *
13875836 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAG-CTGGATCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGGACCAGACTGGATCGAGG
** * * * *
13875900 GTTGTGGCAGCGGGACCAACAGCAAGCAGAAGGGACCGAGCCGATCCCC-AGCTTACGCATTATG
66 GTT-ACGCAGCAGGACCAACAACAAGCAGAAGGGACCAAGCCGATCCCCGA-CTTACGCATTATA
* * * *
13875964 CCTCTCTAGCCTGCTCAGCGATCGAACACT
129 CCTCTCCAACCGGCTCAGCGACCGAACACT
* *
13875994 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAA-GATCAGACTGGATCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGGACCAGACTGGATCGAG
* * * ** * * * *
13876057 GGTTACGTAGCAGGATCGACAACAAGCAGGGGGGACCAAGCTGGTCCCCGACTTGCGCATTCTAC
65 GGTTACGCAGCAGGACCAACAACAAGCAGAAGGGACCAAGCCGATCCCCGACTTACGCATTATAC
* * ** *
13876122 CTCTCCAACCGGTTGAGCTCCCGTACACT
130 CTCTCCAACCGGCTCAGCGACCGAACACT
*
13876151 CGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13876198 CATATGGAGT
Statistics
Matches: 168, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 111 0.66
158 57 0.34
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGGACCAGACTGGATCGAGG
GTTACGCAGCAGGACCAACAACAAGCAGAAGGGACCAAGCCGATCCCCGACTTACGCATTATACC
TCTCCAACCGGCTCAGCGACCGAACACT
Found at i:13876410 original size:26 final size:26
Alignment explanation
Indices: 13876380--13876432 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13876370 GTTAACTTAG
*
13876380 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
13876406 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13876432 G
1 G
13876433 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13876742 original size:356 final size:356
Alignment explanation
Indices: 13876295--13876953 Score: 952
Period size: 356 Copynumber: 1.9 Consensus size: 356
13876285 GGATCAGGCC
* * * * * *
13876295 GATCCCTGGCTTACGCATTCTATCTCTCCGATCGAGCTCTCTAGCCGGCTAAGCTCTCGCATGCT
1 GATCCCTGGCTTACGCATTATACCTCTCCGATCGAGCTCTCGAGCCGGCTAAGCACCCGCACGCT
* *
13876360 CATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
66 CATTTCATGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGTTCATTCCC
*
13876425 AGTCTAAGATCGA-ATCGGA-CTGAGGGTTGC-AGCAGCAGGATCGACAGCACGCAAGGGGGACC
131 AGTCTAAGAT-GAGATCGGATC-GAGGGTTGCGA-CAGCAGGATCGACAGCACACAAGGGGGACC
** **
13876487 AGGCTGATCC-CTGACTTGTGCATTCTACCTCTCCAGCCAGCTGAGTGCCCACACGTTCATTTCG
193 AGGCTGATCCTC-GACTTGTGCATTCTACCTCTCCAGCCAGCTGAGCACCCACACGCCCATTTCG
*
13876551 TGTGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
257 TGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
13876616 AGCAGGATTGGCAGCACACAGAGAAGGGCTGGACT
322 AGCAGGATTGGCAGCACACAGAGAAGGGCTGGACT
* * * *
13876651 GATCCCTGGCTTACGCATTATGCCTCTCTGATCG-GCCTCTCCGATCC-GCTGAGCACCCGCACG
1 GATCCCTGGCTTACGCATTATACCTCTCCGATCGAG-CTCT-CGAGCCGGCTAAGCACCCGCACG
*
13876714 CTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGTTCATTC
64 CTCATTTCATGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGTTCATTC
* * * *
13876779 CCAGTCTAAGATTAGATCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACACAGGGGGGACCG
129 CCAGTCTAAGATGAGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGACCA
* * * *
13876844 GGCTGATCCTCGGCTTGTGCATTCTACCTTTCCAGCCAGCTGAGCACCCGCACGCCCGTTTCGTG
194 GGCTGATCCTCGACTTGTGCATTCTACCTCTCCAGCCAGCTGAGCACCCACACGCCCATTTCGTG
* **
13876909 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
259 GGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGC
13876954 TGAACTAAGG
Statistics
Matches: 267, Mismatches: 30, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
355 2 0.01
356 258 0.97
357 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.24
Consensus pattern (356 bp):
GATCCCTGGCTTACGCATTATACCTCTCCGATCGAGCTCTCGAGCCGGCTAAGCACCCGCACGCT
CATTTCATGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGTTCATTCCC
AGTCTAAGATGAGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGACCAGG
CTGATCCTCGACTTGTGCATTCTACCTCTCCAGCCAGCTGAGCACCCACACGCCCATTTCGTGGG
TTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCA
GGATTGGCAGCACACAGAGAAGGGCTGGACT
Found at i:13876766 original size:26 final size:26
Alignment explanation
Indices: 13876737--13876787 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13876727 TTGACTTAGG
*
13876737 CATACGGAGCTCATCCCCAGTCTAAA
1 CATACAGAGCTCATCCCCAGTCTAAA
* *
13876763 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGCTCATCCCCAGTCTAA
13876788 GATTAGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (26 bp):
CATACAGAGCTCATCCCCAGTCTAAA
Found at i:13877026 original size:356 final size:356
Alignment explanation
Indices: 13876352--13877033 Score: 924
Period size: 356 Copynumber: 1.9 Consensus size: 356
13876342 GCTAAGCTCT
* * *
13876352 CGCATGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
1 CGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGT
* *
13876417 TCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGG
66 TCATTCCCAGTCTAAGATAGAATCGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACACAAGGG
** **
13876482 GGACCAGGCTGATCCCTGACTTGTGCATTCTACCTCTCCAGCCAGCTGAGTGCCCACACGTTCAT
131 GGACCAGGCTGATCCCTGACTTGTGCATTCTACCTCTCCAGCCAGCTGAGCACCCACACGCCCAT
* * * *
13876547 TTCGTGTGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
196 TTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTA
*** * * * *
13876612 TGGCAGCAGGATTGGCAGCACACAGAGAAGGGCTGGACTGATCCCTGGCTTACGCATTATGCCTC
261 TGGCAGCAGGACCAGCAGCACACAGAGAAGGACCGGACCGATCCCCGGCTTACGCATTATGCCTC
13876677 TCTGATCGGCCTCTCCGATCCGCTGAGCACC
326 TCTGATCGGCCTCTCCGATCCGCTGAGCACC
*
13876708 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGT
1 CGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGT
* *
13876773 TCATTCCCAGTCTAAGATTAG-ATCGGA-TCGAGGGTTGC-GACAGTAGGATCGACAGCACACAG
66 TCATTCCCAGTCTAAGA-TAGAATCGGACT-GAGGGTTGCAG-CAGCAGGATCGACAGCACACAA
* * * *
13876835 GGGGGACCGGGCTGAT-CCTCGGCTTGTGCATTCTACCTTTCCAGCCAGCTGAGCACCCGCACGC
128 GGGGGACCAGGCTGATCCCT-GACTTGTGCATTCTACCTCTCCAGCCAGCTGAGCACCCACACGC
* * ** * *
13876899 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGAACTAAG
192 CCATTTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCAAG
** * * * * *
13876963 GGCTATGGCAGTGGGACCAGTAGCACGCAGAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTAT
256 GGCTATGGCAGCAGGACCAGCAGCACACAGAGAAGGACCGGACCGATCCCCGGCTTACGCATTAT
13877028 GCCTCT
321 GCCTCT
13877034 TCGGCTGGCT
Statistics
Matches: 281, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
355 7 0.02
356 272 0.97
357 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (356 bp):
CGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGCTCATCCCCAGTCTAAACATACAGAGT
TCATTCCCAGTCTAAGATAGAATCGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACACAAGGG
GGACCAGGCTGATCCCTGACTTGTGCATTCTACCTCTCCAGCCAGCTGAGCACCCACACGCCCAT
TTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTA
TGGCAGCAGGACCAGCAGCACACAGAGAAGGACCGGACCGATCCCCGGCTTACGCATTATGCCTC
TCTGATCGGCCTCTCCGATCCGCTGAGCACC
Found at i:13877065 original size:159 final size:159
Alignment explanation
Indices: 13876817--13877265 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 159
13876807 TTGCGACAGT
* * * * * * * * * * * *
13876817 AGGATCGACAGCACACAGGGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTACCTTTCCAGCCA
1 AGGACCGATAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCA
* * *
13876882 GCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
13876947 CCCCAGCTGA-ACTAAGGGCTATGGCAGT
131 CACCAGATCAGACTAAGGGCTATGGCAGC
* * * * *
13876975 GGGACC-AGTAGCACGCAGAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGC
1 AGGACCGA-TAGCACGCAGAGG-GGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGC
** * * *
13877039 TGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCT
64 CAGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
* * * *
13877103 AAG-ATCAGATCAGATTGAGGGTTATGGCAGC
128 AAGCACCAGATCAGACTAAGGGCTATGGCAGC
* * * *
13877134 AGGATCGATAGCACGCAGAGGGGACCAGGCTGATCCCTGACTTGCGCATTTTGCCTCTCCAGCCA
1 AGGACCGATAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCA
* * * *
13877199 GCTGAGCACCCGCA-GACTTGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAA
66 GCTCAGCACCCGCACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13877263 GCA
130 GCA
13877266 TACGGAGTTC
Statistics
Matches: 236, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 106 0.45
159 121 0.51
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
AGGACCGATAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCA
GCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CACCAGATCAGACTAAGGGCTATGGCAGC
Found at i:13877241 original size:158 final size:158
Alignment explanation
Indices: 13876763--13877263 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 158
13876753 CCAGTCTAAA
* * * * ** * *
13876763 CATACAGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGACAGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTATGGCAGTAGGATCGATAG
* * * * * *
13876828 CACACAGGGGGGACCGGGCTGAT-CCTCGGCTTGTGCATTCTACCTTTCCAGCCAGCTGAGCACC
66 CACGCAGAGGGGACCGGGCTGATCCCT-GGCTTGCGCATTATGCCTCTCCAGCCAGCTGAGCACC
*
13876892 CGCACGCCCGTTTCGTGGGTTGGCTTAGG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGG
* ** * * * * * * *
13876921 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGA-ACTAAGGGCTATGGCAGTGGGA-CCAG
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGATTGAGGGTTATGGCAGTAGGATCGA-
* * * * ** *
13876983 TAGCACGCAGAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGC
63 TAGCACGCAGAGG-GGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCAGCTGAGC
* *
13877048 ACCCGCACGCTCGTTTCGTGGGTTGACTTATG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* *
13877080 CATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATTGAGGGTTATGGCAGCAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTATGGCAGTAGGATCGATAG
* * *
13877145 CACGCAGAGGGGACCAGGCTGATCCCTGACTTGCGCATTTTGCCTCTCCAGCCAGCTGAGCACCC
66 CACGCAGAGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCAGCTGAGCACCC
*
13877210 GCA-GACTTGTTTCGTGGGTTGGCTTAGG
131 GCACG-CTCGTTTCGTGGGTTGGCTTAGG
* *
13877238 CATATGAAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
13877264 CATACGGAGT
Statistics
Matches: 271, Mismatches: 62, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 9 0.03
158 136 0.50
159 119 0.44
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATTGAGGGTTATGGCAGTAGGATCGATAG
CACGCAGAGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCAGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:13879083 original size:26 final size:26
Alignment explanation
Indices: 13879033--13879085 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13879023 GTTGGCTTAG
*
13879033 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13879059 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13879085 G
1 G
13879086 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13885663 original size:26 final size:26
Alignment explanation
Indices: 13885626--13885678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13885616 GTTGACTTAG
13885626 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13885652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13885678 G
1 G
13885679 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13886681 original size:183 final size:184
Alignment explanation
Indices: 13886326--13886685 Score: 415
Period size: 183 Copynumber: 2.0 Consensus size: 184
13886316 TTGACTTAGA
* * *
13886326 CATACGAAGATCATTCCCAGCCTAAGATCAGATCGGACCTAGGGTTGCGACACTAGGATCGACAG
1 CATACGAAGATCATTCCCAGCCGAAGATCAGATCGGACCGAAGGTTGCGACACTAGGATCGACAG
* *** * * * *
13886391 CACGCAGGAGGGACTGGGCCAATCCCTGGCTTGAGCATTCTGCCTCTCTGGCTGACTGAGCACCC
66 CACGCAGGAGGGACTGAGCCAATCCCCAACTTGAGCATTCTGCCTCTCCGACCGACTGAGCACCA
*
13886456 TCACGCTCGTTTTGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATAACTAAG
131 TCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATAACTAAG
* * * * *
13886510 CATATGAAGTTCATTCTCAGTCGAAGATCAGATCGGACCGAAGGTTGCGACAGC-AGGATCGGCA
1 CATACGAAGATCATTCCCAGCCGAAGATCAGATCGGACCGAAGGTTGCGACA-CTAGGATCGACA
* * * *
13886574 GCATGTAGG-GGGA-TCGAGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
65 GCACGCAGGAGGGACT-GAGCCAATCCCCAACTTGAGCATTCTGCCTCTCCGACCGACTGAGCAC
* * * * *
13886637 CGAT-ACGCTTGTTTCGT-GGATTGGTTTAGGTATATGGAGTTCATTCCAT
129 C-ATCACGCTCGTTTCGTAGG-TTGGCTTAGGCATACGAAGTTCATTCCAT
13886686 GTTTAAGCCC
Statistics
Matches: 146, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
182 3 0.02
183 80 0.55
184 62 0.42
185 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (184 bp):
CATACGAAGATCATTCCCAGCCGAAGATCAGATCGGACCGAAGGTTGCGACACTAGGATCGACAG
CACGCAGGAGGGACTGAGCCAATCCCCAACTTGAGCATTCTGCCTCTCCGACCGACTGAGCACCA
TCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATAACTAAG
Found at i:13886873 original size:26 final size:26
Alignment explanation
Indices: 13886837--13886889 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13886827 GTTGACTTAG
*
13886837 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
13886863 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13886889 G
1 G
13886890 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13886918 original size:354 final size:341
Alignment explanation
Indices: 13886460--13887445 Score: 978
Period size: 354 Copynumber: 2.8 Consensus size: 341
13886450 GCACCCTCAC
* * * * * * *
13886460 GCTCGTTTTGTAGGTTGGCTTAGGCATACGAAGTTCATTCCATA-ACTAAGCATA-TGAAGTTCA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATACAG-AGTTCA
* * * * * * *
13886523 TTCTCAGTCGAAGATCAGATCGGACCGAAGGTTGCGACAGCAGGATCGGCAGCATGTAGGGGGAT
64 TTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGTAGGGGGAT
* * * * * **
13886588 CGAGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCGATACGCTTGTTTCG
129 CGGGCCGATCCCCAGCTTGTGCATTCTACCTCT-CGACCGGCTGAGCACCGATACGCCCGTTTCG
* * * *
13886653 TGGATTGGTTTAGGTATATGGAGTTCATTCCATGTTTAAGCCCCAGCCGGACCGAGGATTATGGC
193 TGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATTATGGC
* * *
13886718 AGCAAGACTGGCAGCGGGATCGGCAACACACAAAGGGGGACCGTGCTGATCCCCGGCTTACGTAT
258 AGC--G---GG-A-C-----CGACAACACACAAAGGGGGACCGAGCTGATCCCCGGCTTACGCAT
*
13886783 TATGCCTCTCCGACCGGCTAAG-CACCCGTAA
311 TATGCCTCTCCGACCGGCTAAGTCA-CCGCAA
13886814 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
* *
13886879 CCCAGTCTAAGATTGGATTGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGTAGGGGGACCG
66 CCCAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGTAGGGGGATCG
* * * ** * * *
13886944 GGCAGGTCCCCAGCTTATGCATTCTACCTCTTCGGTCGGTTGAGCGCCTG-CACGCCCGTTTCGT
131 GGCCGATCCCCAGCTTGTGCATTCTACCTC-TCGACCGGCTGAGCACC-GATACGCCCGTTTCGT
*
13887008 CGG-TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGA-TATGG
194 -GGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG-AGGATTATGG
* * * * * ** *
13887071 CAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCTGATCTCTGGCTTGTGCATTATGCCTCTTC
257 CAGCGGGACCGACAACACACAAAGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGCCTCTCC
* * * * * *
13887136 GATCGGTTCAGTGATCGCAC
322 GACCGGCTAAGTCACCGCAA
* * * * * *
13887156 GCTCATTTCATGGGTTGACTTATGCGTACGGAGTTCATCCCTAGTGTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
* * * ** * * *
13887221 CCCAGTCTAAGATCGGACTAGACTGAGGGTTACGTTAGTAGGATCGGCAGCACGCAGGAGGGATA
66 CCCAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGTAGG-GGGATC
* * * * *
13887286 GGGCCGATCCCCGGCTTGTGCATTCTACCCCTCGAACTGGCTAAGCACC-ATTACACCCGTTTCG
130 GGGCCGATCCCCAGCTTGTGCATTCTACCTCTCG-ACCGGCTGAGCACCGA-TACGCCCGTTTCG
* * * *
13887350 TGCATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
193 TGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATTATGGC
* ** * *
13887415 AGCGGGATCGACAGTACGCAGAGGGGGACCG
258 AGCGGGACCGACAACACACAAAGGGGGACCG
13887446 GGTCGATCCT
Statistics
Matches: 529, Mismatches: 90, Indels: 37
0.81 0.14 0.06
Matches are distributed among these distances:
342 172 0.33
343 133 0.25
347 1 0.00
348 1 0.00
349 2 0.00
352 1 0.00
353 5 0.01
354 205 0.39
355 9 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (341 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGATCGGATTGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGTAGGGGGATCG
GGCCGATCCCCAGCTTGTGCATTCTACCTCTCGACCGGCTGAGCACCGATACGCCCGTTTCGTGG
ATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATTATGGCAGC
GGGACCGACAACACACAAAGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACC
GGCTAAGTCACCGCAA
Found at i:13887231 original size:26 final size:26
Alignment explanation
Indices: 13887182--13887231 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13887172 GACTTATGCG
*
13887182 TACGGAGTTCATCCCTAGTGTAAGCA
1 TACGGAGTTCATCCCTAGTCTAAGCA
13887208 TACGGAGTTCATTCCC-AGTCTAAG
1 TACGGAGTTCA-TCCCTAGTCTAAG
13887232 ATCGGACTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCTAGTCTAAGCA
Found at i:13887233 original size:342 final size:343
Alignment explanation
Indices: 13886814--13887536 Score: 909
Period size: 343 Copynumber: 2.1 Consensus size: 343
13886804 GCACCCGTAA
* * *
13886814 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
1 GCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
* * * * *
13886879 CCCAGTCTAAGATTGGATTGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGTAGG-GGGACC
66 CCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGAGGGACA
* * ** * * * *
13886943 GGGCAGGTCCCCAGCTTATGCATTCTACCTCTTCGGTC-GGTTGAGCGCC-TGCACGCCCGTTTC
131 GGGCAGATCCCCAGCTTATGCATTCTACC-CCTCGAACTGGCTAAGCACCAT-CACACCCGTTTC
*
13887006 GT-CGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGATATG
194 GTGC-ATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGATATG
* *
13887070 GCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCT-GAT-CTCTGGCTTGTGCATTATGCCTC
258 GCAGCGGGACCGACAGCACGCAGAGGGGGACCG-GCTCGATCCTC-GACTTGTGCATTATACCTC
* * * ** * *
13887133 TTCGATCGGTTCAGTGATCGCAC
321 TTCGACCAGCTCAACGACCGAAC
* * *
13887156 GCTCATTTCATGGGTTGACTTATGCGTACGGAGTTCATCCCTAGTGTAAGCATACGGAGTTCATT
1 GCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
* ** * *
13887221 CCCAGTCTAAGATCGGACTAGACTGAGGGTTACGTTAGTAGGATCGGCAGCACGCAGGAGGGATA
66 CCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGAGGGACA
* * * *
13887286 GGGCCGATCCCCGGCTTGTGCATTCTACCCCTCGAACTGGCTAAGCACCATTACACCCGTTTCGT
131 GGGCAGATCCCCAGCTTATGCATTCTACCCCTCGAACTGGCTAAGCACCATCACACCCGTTTCGT
** * * *
13887351 GCATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
196 GCATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGATATGGCA
* * * *
13887416 GCGGGATCGACAGTACGCAGAGGGGGACCGGGTCGATCCTCGACTTGTGCATTATACCTCTTCGG
261 GCGGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCCTCGACTTGTGCATTATACCTCTTCGA
*
13887481 CCAGCTCAACGCCCGAAC
326 CCAGCTCAACGACCGAAC
* *
13887499 GCTCATTTCATGGGTTAACTTATGCATACGAAGTTCAT
1 GCTCATTTCATGGGTTGACTTATGCATACGGAGTTCAT
13887537 TGCCAGTCTA
Statistics
Matches: 324, Mismatches: 51, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
342 116 0.36
343 203 0.63
344 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (343 bp):
GCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGAGGGACA
GGGCAGATCCCCAGCTTATGCATTCTACCCCTCGAACTGGCTAAGCACCATCACACCCGTTTCGT
GCATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGATATGGCA
GCGGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCCTCGACTTGTGCATTATACCTCTTCGA
CCAGCTCAACGACCGAAC
Found at i:13887872 original size:26 final size:26
Alignment explanation
Indices: 13887836--13887888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13887826 GTTGACTTAG
13887836 GCATACGAAGTTCAGCCCCAGTCTAA
1 GCATACGAAGTTCAGCCCCAGTCTAA
**
13887862 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGCCCCAGTCTAA
13887888 G
1 G
13887889 GTCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAGCCCCAGTCTAA
Found at i:13888150 original size:158 final size:157
Alignment explanation
Indices: 13887924--13888362 Score: 461
Period size: 156 Copynumber: 2.8 Consensus size: 157
13887914 AACAAGATCA
* * * * * *
13887924 ACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTACGGATTCTGCCTCTCCGGCCGATTGAGC
1 ACAGCATGTA-GGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGC
* * * * *
13887989 GCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
65 GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* **
13888053 CCAGACCGAGGGTTGTGGCAGCGGGACCG
130 CCA-ACCGAGGGTTGTGACAGAAGGACCG
** * * * * *
13888082 GTAGCATGTAGAGGGGACCAGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGGTCGACTCAGC
1 ACAGCATGTAG-GGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGC
** * * ** * * *
13888147 GCCCGCACGCTCGTTTAATGGGTTAACTTATGCATACAAAGTTCATTCCA-GTATAAG-ATCGGA
65 GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * **
13888210 CCAATCGGGGGTTGTGACAGAAGGATTG
130 CCAACCGAGGGTTGTGACAGAAGGACCG
* * ** *
13888238 ACAGCATGCCAGGGGGACCGGGTTGATCCTCGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGC
1 ACAGCATG-TAGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGC
*
13888303 GCCCGCACGCTCGTTACGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13888363 TACAGAGTTC
Statistics
Matches: 222, Mismatches: 54, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
156 113 0.51
157 18 0.08
158 91 0.41
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
ACAGCATGTAGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCG
CCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAACCGAGGGTTGTGACAGAAGGACCG
Found at i:13888370 original size:26 final size:26
Alignment explanation
Indices: 13888334--13888386 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13888324 GTTAGCTTAG
*
13888334 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
13888360 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13888386 G
1 G
13888387 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13888476 original size:11 final size:11
Alignment explanation
Indices: 13888456--13888488 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13888446 CCCAGGGCAC
13888456 CATCGTCGGAG
1 CATCGTCGGAG
*
13888467 CATTGTCGGAG
1 CATCGTCGGAG
13888478 CATCGTCGGAG
1 CATCGTCGGAG
13888489 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:13889382 original size:158 final size:156
Alignment explanation
Indices: 13889094--13889595 Score: 576
Period size: 158 Copynumber: 3.2 Consensus size: 156
13889084 CCCAGTCTAA
* * * **
13889094 GCATATAGAGTTCATTCCCAGTCTAAGATCAGAACAGCCCGAGGGTTACGATAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACAGACCGAGGGTTACG-CAGCAGGATCGACA
* * * * * * * *
13889159 GTATGCAAGAGGGACCGGTCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTCAGCGCC
64 GCATGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
13889224 CGTACGCTCGTTTCATAGGTTGACTTAG
129 CGCACGCTCGTTTCGTAGGTTGACTTAG
*
13889252 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGTGGGTTACAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTAC-GCAGCAGGATCGACA
* * *
13889317 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
64 GCATGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
13889382 CGCACGTTCGTTTCGTAGGTTGACTTAG
129 CGCACGCTCGTTTCGTAGGTTGACTTAG
* * * * *
13889410 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGCTCT-GGCAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAC-AGACCGAGGG-T-TACGCAGCAGGATCGAC
* * * * ** * *
13889474 AGCATGAAGAGGGGCACTGGACCGATCCCCAGCTTGCATATTCTGCCTCTCCGATAGGCTGAGCG
63 AGCATGCAG-GGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
13889539 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTAGGTTGACTTAG
* *
13889569 ACATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
13889596 CCCCAGCCGA
Statistics
Matches: 296, Mismatches: 41, Indels: 13
0.85 0.12 0.04
Matches are distributed among these distances:
157 2 0.01
158 196 0.66
159 97 0.33
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTACGCAGCAGGATCGACAGC
ATGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTAGGTTGACTTAG
Found at i:13889627 original size:159 final size:159
Alignment explanation
Indices: 13889146--13889651 Score: 470
Period size: 158 Copynumber: 3.2 Consensus size: 159
13889136 GGGTTACGAT
** * * ** *
13889146 AGCAGGATCGGTAGTATGCAAGA-GGG-ACCGGTCCGATCCCTGGCTTGCGCATTCTGCCTCTCC
1 AGCAGGATCGACAGCATG-AAGAGGGGCACCGGACCGATCCCCAGCTTGCACATTCTGCCTCTCC
*** * * * * * * *
13889209 GGCCGACTCAGCGCCCGTACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
65 GATAGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTAGT
* * * * *
13889274 CTAAGATCAGATC-AGACCGTGGGTTAC-AGC
130 CTAAGACCAGACCGA-ACCGAGGGCT-CTGGC
* * * * * * *
13889304 AGCAGGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCATGAAGAGGGGCACCGGACCGATCCCCAGCTTGCACATTCTGCCTCTCCG
* * * *
13889368 GTCGGCTGAGCGCCCGCACGTTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
66 ATAGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTAGTC
* * * *
13889433 TAAGATCGGACTGGACCGAGGGCTCTGGC
131 TAAGACCAGACCGAACCGAGGGCTCTGGC
* *
13889462 AGCAGGATCGACAGCATGAAGAGGGGCACTGGACCGATCCCCAGCTTGCATATTCTGCCTCTCCG
1 AGCAGGATCGACAGCATGAAGAGGGGCACCGGACCGATCCCCAGCTTGCACATTCTGCCTCTCCG
* *
13889527 ATAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCC-ATGT
66 ATAGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTA-GT
* * * *
13889591 CTAAGCCCCAG-CCGAACCGAGGGTTGTGGT
130 CTAAG-ACCAGACCGAACCGAGGGCTCTGGC
* * *
13889621 AGCAGGACCGACAACATGCAA-AGGGGGACCG
1 AGCAGGATCGACAGCATG-AAGAGGGGCACCG
13889652 AGCTGATCCT
Statistics
Matches: 290, Mismatches: 50, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
157 6 0.02
158 145 0.50
159 135 0.47
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
AGCAGGATCGACAGCATGAAGAGGGGCACCGGACCGATCCCCAGCTTGCACATTCTGCCTCTCCG
ATAGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTAGTC
TAAGACCAGACCGAACCGAGGGCTCTGGC
Found at i:13889660 original size:159 final size:158
Alignment explanation
Indices: 13889169--13889660 Score: 456
Period size: 159 Copynumber: 3.1 Consensus size: 158
13889159 GTATGCAAGA
* ** * *** * * *
13889169 GGGACCGGTCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTCAGCGCCCGTACGCTCG
1 GGGACCGG-CTGATCCCCAGCTTGCACATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCG
* * * * * * * *
13889234 TTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGTGGGT
65 TTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTAGTCTAAGACCAGACCGA-ACCGAGGGC
* * * * *
13889298 TAC-AGCAGCAGGATCGACAGCACGCAG-GG
129 T-CTGGCAGCAGGACCGACAACATGAAGAGG
* * * * *
13889327 GGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGTTCG
1 GGGACC-GGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCG
* * * * *
13889392 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGCT
65 TTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTAGTCTAAGACCAGACCGAACCGAGGGCT
* *
13889457 CTGGCAGCAGGATCGACAGCATGAAGAGG
130 CTGGCAGCAGGACCGACAACATGAAGAGG
* * * *
13889486 GGCACTGGACCGATCCCCAGCTTGCATATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCG
1 GGGACCGG-CTGATCCCCAGCTTGCACATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCG
* * *
13889551 TTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGAACCGAGGG
65 TTTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTA-GTCTAAG-ACCAGACCGAACCGAGGG
* * *
13889614 TTGTGGTAGCAGGACCGACAACATGCAA-AGG
128 CTCTGGCAGCAGGACCGACAACATG-AAGAGG
13889645 GGGACCGAGCTGATCC
1 GGGACCG-GCTGATCC
13889661 TTGACTTACT
Statistics
Matches: 281, Mismatches: 44, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
157 1 0.00
158 134 0.48
159 141 0.50
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GGGACCGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCGT
TTCGTAGGTTGACTTAGACATACGGAGTTCATTCCTAGTCTAAGACCAGACCGAACCGAGGGCTC
TGGCAGCAGGACCGACAACATGAAGAGG
Found at i:13890074 original size:159 final size:158
Alignment explanation
Indices: 13889807--13890269 Score: 430
Period size: 159 Copynumber: 2.9 Consensus size: 158
13889797 GGATCAAATC
* * * * * * * *
13889807 GAGGGTTACGATAGTAGGATCGACGGCACAC-AGGGGGATCGAGCCGACCCTCGACTTGCGCATT
1 GAGGGTTGCGACAGCAGGACCGACAGCACACAAAGGGGATCGGGCCGATCCTCGACTTGCGCATT
* * * * *
13889871 CTGCCTCTTTGACCGG-TTGAGCGCCCGCACGCCCGTTTGGTGGGTTGGCTTAGGCATAAGGAGT
66 CTGCCTCTTCGATCGGCTT-AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
13889935 TCATTCCATGTCTAAGCCCTAG-CCAGACA
130 TCATTCCATGTCTAAGCCC-AGACCAGACA
* ** * * *
13889964 GAGGGTTGTGGTAGCAGGACCGACAGCACGCAAAAGGGGATCGGGCCGATCCTCGGCTTACGCAT
1 GAGGGTTGCGACAGCAGGACCGACAGCACAC-AAAGGGGATCGGGCCGATCCTCGACTTGCGCAT
* * ** * * * *
13890029 TATGCCTCTTCGGTCGGCTTAGCGCTAGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGT
65 TCTGCCTCTTCGATCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* ** * * *
13890094 TTATTCCCA-GTCTAAGATCAGATCGGACC
130 TCATT-CCATGTCTAAGCCCAGACCAGACA
* * ** * * *
13890123 GAGGGTTGCGACAGTAGGATCGACAGCACACAGGGGGAGACCGGGTCGATCCCCGACTTGCGCAT
1 GAGGGTTGCGACAGCAGGACCGACAGCACACAAAGGG-GATCGGGCCGATCCTCGACTTGCGCAT
* * * * * *
13890188 TCTGCCTCTCCGATCGACTGAACGCCCGCCCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTTCGATCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
13890253 TCATTCAATGTCTAAGC
130 TCATTCCATGTCTAAGC
13890270 ATACGGAGTT
Statistics
Matches: 238, Mismatches: 61, Indels: 12
0.77 0.20 0.04
Matches are distributed among these distances:
157 24 0.10
158 8 0.03
159 201 0.84
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGACAGCAGGACCGACAGCACACAAAGGGGATCGGGCCGATCCTCGACTTGCGCATT
CTGCCTCTTCGATCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCAGACCAGACA
Found at i:13890278 original size:26 final size:25
Alignment explanation
Indices: 13890242--13890292 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
13890232 GTTGGCTTAG
13890242 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
13890268 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
13890293 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:13891322 original size:158 final size:158
Alignment explanation
Indices: 13891075--13891489 Score: 408
Period size: 158 Copynumber: 2.6 Consensus size: 158
13891065 GGATCGGACC
* * * * *
13891075 GATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGC-CTGTTTCATGGGT
1 GATCCCCGGCTTGCGCATTCTGCCTCTC-CGACTGCTGAGCGCCCGCACGCTC-ATTTCATGGGT
* * * * * * **
13891139 TGGCTTAGGCATAGGGAGTAAATTCCATGTCTGAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAAC
64 TGGCTTAGGCATACGAAGTTAATTCCATGTCTAAG-ACCAGATCGGACT-GAGAGTTGCAGCAAC
* **
13891202 GGGACCGACAGCACGTAGAGGGGGACCGGGTA
127 AGGACCGACAGCACAAAGAGGGGGACCGGGTA
* * * *
13891234 GATCCCCGGCTTGCGCATTATGCCTCTCCGACTGCTCAGCGCCTGCACACTCATTTCATGGGTTG
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
* * * *** *
13891299 ACTTAGGCATATGAAGTTTATTCCCA-GTCTAAGATTGGATCGGACTGAGAGTTGCAGCAGCAGG
66 GCTTAGGCATACGAAGTTAATT-CCATGTCTAAGACCAGATCGGACTGAGAGTTGCAGCAACAGG
* * *
13891363 ATCGACAGCATAAAGAGGGGGACCGGGTC
130 ACCGACAGCACAAAGAGGGGGACCGGGTA
* * * *
13891392 GATCCCCGGCTTGCGCATTCTACCTGTCCGA-TCGACTGAGCGCCCGTACGCTTATTTCATGGGT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-G-CTGAGCGCCCGCACGCTCATTTCATGGGT
*
13891456 TGGGCTTAGGCATACGAAGTTCATTCCATGTCTA
64 T-GGCTTAGGCATACGAAGTTAATTCCATGTCTA
13891490 GGCATACAGA
Statistics
Matches: 208, Mismatches: 40, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 122 0.59
159 59 0.28
160 25 0.12
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGCTGAGCGCCCGCACGCTCATTTCATGGGTTG
GCTTAGGCATACGAAGTTAATTCCATGTCTAAGACCAGATCGGACTGAGAGTTGCAGCAACAGGA
CCGACAGCACAAAGAGGGGGACCGGGTA
Found at i:13891703 original size:26 final size:26
Alignment explanation
Indices: 13891673--13891725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13891663 GTTGACTTAG
*
13891673 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13891699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13891725 G
1 G
13891726 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13892056 original size:26 final size:26
Alignment explanation
Indices: 13892014--13892066 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13892004 CTTGGCTTAG
13892014 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13892040 GCATACGGAGCTT-ATTCCCAGTCTAA
1 GCATACGGAG-TTCATTCCCAGTCTAA
13892066 G
1 G
13892067 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13892764 original size:25 final size:26
Alignment explanation
Indices: 13892730--13892781 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
13892720 GTTGACTTAG
13892730 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13892755 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
13892781 G
1 G
13892782 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:13893463 original size:159 final size:158
Alignment explanation
Indices: 13893170--13893638 Score: 423
Period size: 159 Copynumber: 3.0 Consensus size: 158
13893160 AAGATCGGAT
* * * * *
13893170 ACCGGACCG-GGGTTGCGGCAGCAGGATCAACAGCACGTA-GGG-GGATCGGGCC-AATCCCCGG
1 ACCGGACCGAGGGTTGCGACAGCAGGACCAACAGCACGCAGGGGAGGATCGGGCCGAA-CCTCGA
* * * ** * * *
13893231 CTTGCGCATTCTACCTCTCCGGTCG-CTGAGCGCCCGTACGCCCGTTTCGTGTGTTGGCTTAGGC
65 CTTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCCACACGCTCATTTCGTGGGTT-GCTTAGGC
*
13893295 ATAGGGAGTTCATTCCATGTCTAAGCCCCA
129 ATACGGAGTTCATTCCATGTCTAAGCCCCA
* * ** * *
13893325 ACCGGACCGAGGGTTGTGGCAGGGGGACCGACAGCACGCAGATGG-GGATCGGGCCGAACCTCGA
1 ACCGGACCGAGGGTTGCGACAGCAGGACCAACAGCACGCAG-GGGAGGATCGGGCCGAACCTCGA
* * * * *
13893389 CTTGCGCATTATGCCTTTTCGG-CTGGCTCAGTGCCCACACGCTCATTTCGTGGGTTGAATTAGG
65 CTTGCGCATTATGCCTCTCCGGTC-GACTCAGCGCCCACACGCTCATTTCGTGGGTTG-CTTAGG
** **
13893453 CATACGGAGTTCATTCCCA-GTCTAAGATCGG
128 CATACGGAGTTCATT-CCATGTCTAAGCCCCA
* * * * * *
13893484 ATCGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGAGGATCGGGTCGATCTTCGGC
1 ACCGGACCGAGGGTTGCGACAGCAGGACCAACAGCACGCAGGGGAGGATCGGGCCGAACCTCGAC
* * * * ** *
13893549 TTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCTCGCACGCTTGTTTCATGGGTTTGCTTAGGCA
66 TTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCCACACGCTCATTTCGTGGG-TTGCTTAGGCA
* *
13893614 TACAGAGTTTATTCCATGTCTAAGC
130 TACGGAGTTCATTCCATGTCTAAGC
13893639 ATACGGAGTT
Statistics
Matches: 249, Mismatches: 53, Indels: 20
0.77 0.16 0.06
Matches are distributed among these distances:
155 9 0.04
156 24 0.10
157 1 0.00
158 41 0.16
159 167 0.67
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
ACCGGACCGAGGGTTGCGACAGCAGGACCAACAGCACGCAGGGGAGGATCGGGCCGAACCTCGAC
TTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCCACACGCTCATTTCGTGGGTTGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCA
Found at i:13893640 original size:26 final size:26
Alignment explanation
Indices: 13893611--13893663 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13893601 GTTTGCTTAG
*
13893611 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13893637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13893663 G
1 G
13893664 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13894014 original size:26 final size:26
Alignment explanation
Indices: 13893978--13894030 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13893968 GTTGACTTAG
*
13893978 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13894004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13894030 G
1 G
13894031 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13894210 original size:355 final size:360
Alignment explanation
Indices: 13893560--13894211 Score: 838
Period size: 355 Copynumber: 1.8 Consensus size: 360
13893550 TGCGCATTCT
* * *
13893560 GCCTCTCCGGTCGACTGAGCGCTCGCACGCTTGTTTCATGGGTTTGCTTAGGCATACAGAGTTTA
1 GCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTTGCTTAGGCATACAGAGTTCA
* ** * *
13893625 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGAGGTG
66 TCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTT---GTG
* * *
13893690 GCAGGACCAACAGCAGGATCGACAACACGCAGGGGGATCGGACCGATCCCCGGCTTGTGTATTCT
128 GCA-G---AACAGCAGGATCGACAACACGCAGGGGGACCGGACCGATCCCCGGCTTGCGCATTCT
* * ** **
13893755 GCCTCTCCGACCGGTTGAGCGCCCGCACGTTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCA
189 GCCTCTCCGACCGGCTGAGAGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA
13893820 TTCCATGTCTAAGCCCCAGCTGGACCGAAGGTTGTGGCAGCAGGATCGACAGCACGTGGAGGGGA
254 TTCCATGTCTAAGCCCCAGCTGGACCGAAGGTTGTGGCAGCAGGATCGACAGCACGTGGAGGGGA
13893885 ACCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGATCG
319 ACCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGATCG
* * **
13893927 GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG-TTGACTTAGGCATATGGAGTTC
1 GCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTTG-CTTAGGCATACAGAGTTC
13893991 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGG-T-T-G
65 AT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGG
* * * * * *
13894052 C-G-ACAGTAGGATCGGCAGCACGTAGGGGGACC-GAGCTGATCCCCGGCTTGCGCATTCTGTCT
129 CAGAACAGCAGGATCGACAACACGCAGGGGGACCGGA-CCGATCCCCGGCTTGCGCATTCTGCCT
* * *
13894114 TTCC-AGCCGGCTGAGAGCCTC-CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
193 CTCCGA-CCGGCTGAGAGCC-CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* *
13894177 CCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGG
256 CCATGTCTAAGCCCCAGCTGGACCGAAGGTTGTGG
13894212 TAACTGGACC
Statistics
Matches: 248, Mismatches: 32, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
354 3 0.01
355 131 0.53
356 1 0.00
359 1 0.00
361 2 0.01
362 1 0.00
366 4 0.02
367 102 0.41
368 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (360 bp):
GCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTTGCTTAGGCATACAGAGTTCA
TCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCA
GAACAGCAGGATCGACAACACGCAGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGACCGGCTGAGAGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCTGGACCGAAGGTTGTGGCAGCAGGATCGACAGCACGTGGAGGGGAACCGGGC
TGATCCTCGGCTTGTGCATTATGCCTCTCCGATCG
Found at i:13899912 original size:157 final size:159
Alignment explanation
Indices: 13899592--13899939 Score: 409
Period size: 157 Copynumber: 2.2 Consensus size: 159
13899582 CCCAGTCTAA
* *
13899592 GCATAC-AGAGTTCATTCCCAGTCTAAGATC-GATCCAGCCTGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCCAGCCTGAGGGTTGTAGCAGCAGGATCGA
* * ** *
13899655 CAGCACGCAAGAGGGACCAGACCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCGACTCAGCA
65 CAGCACGCAAGAGGGACCAGACCGATCCCCAACTTACGCATTCTGCCTCTCCGACCGACTAAGCA
*
13899720 CCCGTACACTCGTTTCGTAAGTTGACTTAG
130 CCCGCACACTCGTTTCGTAAGTTGACTTAG
* *
13899750 GCATACGAAGTTCATTCCCAGTTTAAGATCAGAT-CAGACC-GTGGGTTGTAGCAGCAGGATCGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCCAG-CCTGAGGGTTGTAGCAGCAGGATCGA
* * * * * * ** *
13899813 TAGCACGC-AGGGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCTGGTCGGCTAAGCA
65 CAGCACGCAAGAGGGACCAGACCGATCCCCAACTTACGCATTCTGCCTCTCCGACCGACTAAGCA
** * *
13899877 CCCGCATGCTCGTTTTGTAGGTTGACTTAG
130 CCCGCACACTCGTTTCGTAAGTTGACTTAG
* * *
13899907 GCATACGGAGTTCATTCCTAGTCTCAGATCAGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGA
13899940 CTGGACCAAG
Statistics
Matches: 160, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
157 97 0.61
158 57 0.36
159 6 0.04
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCCAGCCTGAGGGTTGTAGCAGCAGGATCGAC
AGCACGCAAGAGGGACCAGACCGATCCCCAACTTACGCATTCTGCCTCTCCGACCGACTAAGCAC
CCGCACACTCGTTTCGTAAGTTGACTTAG
Found at i:13900648 original size:159 final size:158
Alignment explanation
Indices: 13900319--13900780 Score: 434
Period size: 159 Copynumber: 2.9 Consensus size: 158
13900309 TCGAATCGAA
* ** * * * *
13900319 GGTTGCGATAGCAGGATCGACGGCACACAGGAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTG
1 GGTTACGATAGCAGGATCGACAACACAAAAG-GGGACCGGGCTGATCCTTGGCTTGCGCATTCTG
* * * * *
13900384 CCTCTTTGACCGGCTGAGCGCCCA-CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
65 CCTCTTCGACCGGCTGAGCG-CCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*
13900448 TT-CCATGTCTAAGCCCCAGCCAGACCGAG
129 TTCCCATGTCTAAGCACCAGCCAGACCGAG
** * * *
13900477 GGTTGTGGTAGCAGGA-CTGACAACACGCAAAAGGGGACCGGGCTGATCCTTGGCTTGCACATTA
1 GGTTACGATAGCAGGATC-GACAACA--CAAAAGGGGACCGGGCTGATCCTTGGCTTGCGCATTC
* * * * * *
13900541 TGCCTCTTCGACTGGCTCAGCGCCAGCACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTT
63 TGCCTCTTCGACCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * * * *
13900606 ATTCCCA-GTCTAAG-ATCAGATCGGTCTGAG
128 ATTCCCATGTCTAAGCACCAG-CCAGACCGAG
* * * * * * *
13900636 GGTTACGATAGCAGGATCGACAGCACACAGGGAAGGCCCAGG-TCGATCCTCGGCTTGCGTATTC
1 GGTTACGATAGCAGGATCGACAACACAAAAGG--GGACCGGGCT-GATCCTTGGCTTGCGCATTC
* * *
13900700 TGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
63 TGCCTCTTCGACCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
*
13900765 ATT-CAATGTCTAAGCA
128 ATTCCCATGTCTAAGCA
13900781 TACGGAGTTC
Statistics
Matches: 243, Mismatches: 49, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 28 0.12
159 200 0.82
160 9 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GGTTACGATAGCAGGATCGACAACACAAAAGGGGACCGGGCTGATCCTTGGCTTGCGCATTCTGC
CTCTTCGACCGGCTGAGCGCCAGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCCATGTCTAAGCACCAGCCAGACCGAG
Found at i:13900788 original size:26 final size:25
Alignment explanation
Indices: 13900752--13900803 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13900742 GTTGGCTTAG
13900752 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
13900778 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
13900803 G
1 G
13900804 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:13901962 original size:159 final size:157
Alignment explanation
Indices: 13901437--13901968 Score: 545
Period size: 159 Copynumber: 3.4 Consensus size: 157
13901427 TCTCTGGTCA
* *
13901437 GCTGAGCGTCCGCATGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
1 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * *
13901501 GATCAAACCAGACTGAGGGTTGCGGCAGTAAGATCGACAGCACGTAGGGGGGACCGAGCTGATCC
65 GATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGGGGGGACCGAGCTGATCC
* * *
13901566 CCGACTTGTGCATTCTACCTCTCTGGCCG
130 CCG-CTTGCGCATTCTACCTCTCCGACCG
* * * * * ** *
13901595 GCTGAGCGCCTGTACAC-CT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTAAATT-CCATGTCC
1 GCTGAGCGCCCG--CACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCT
** * * * ** * *
13901657 AAGCCCCAG-CTGGACTGAAGGTTGTGGTAGCGGGACCGACAGCACGTAGAGTGGGACCGAGCTG
63 AAG-ATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGTAG-GGGGGACCGAGCTG
* * *
13901721 ATCCCCGGCTTGCGCATTATGCCTCTCCGACTG
126 ATCCCC-GCTTGCGCATTCTACCTCTCCGACCG
* * * *
13901754 GCTTAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* * ** *
13901819 ATCAGACCGGACTGAGGGTTGCGGTAGCATGATCGATAGCACAAAAGGGGGGACC-AGGTCGATC
66 ATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCAC-GTAGGGGGGACCGAGCT-GATC
13901883 CCCAGCTTGCGCATTCTACCTCTCCGACCG
129 CCC-GCTTGCGCATTCTACCTCTCCGACCG
* ** *
13901913 ACTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
1 GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC
13901969 ATGCCTAAGT
Statistics
Matches: 298, Mismatches: 63, Indels: 25
0.77 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 83 0.28
159 201 0.67
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
ATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGGGGGGACCGAGCTGATCCC
CGCTTGCGCATTCTACCTCTCCGACCG
Found at i:13902190 original size:26 final size:26
Alignment explanation
Indices: 13902160--13902212 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13902150 GTTGACTTAG
*
13902160 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13902186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13902212 G
1 G
13902213 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13903124 original size:13 final size:13
Alignment explanation
Indices: 13903106--13903131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13903096 TGCATATTAT
13903106 GCCTCTCCGATCG
1 GCCTCTCCGATCG
13903119 GCCTCTCCGATCG
1 GCCTCTCCGATCG
13903132 ACTGAGTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:13903702 original size:26 final size:26
Alignment explanation
Indices: 13903673--13903723 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13903663 TTTGCTTAGG
* *
13903673 CATACGGAGTTTATT-CCATGTCTAAA
1 CATACAGAGTTCATTCCCA-GTCTAAA
13903699 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
13903724 GATCGGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:13903864 original size:191 final size:184
Alignment explanation
Indices: 13903514--13903888 Score: 432
Period size: 191 Copynumber: 2.0 Consensus size: 184
13903504 TTGAAGTAGG
* *
13903514 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGACAGTAGGATCGACAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGGGACAGTAGGATCGACAA
* * *
13903579 CACGTAGGGGAGGACCGGGTTGATCTCCAGCTTATGCATTCTACCTCTCCGGTCAGTTGAGCACC
66 CACGTAGGGGAGGACCGGATCGATCTCCAGCTTATGCATTCTACCTCTCCGGCCAGTTGAGCACC
* * * * *
13903644 CGCGTGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTTATTCCATGTCTAAA
131 CACGT-CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAA
** *
13903699 CATACAGAGTTCATTCCCAGTCTAAGATCGGATC-GAGGGTTGAGGTGGCAGGACCAGTAGTAGG
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG-AG-GGTGG--GGA-C---AGTAGG
* * * * * *
13903763 ATCGGCAACACGTAGGGG-GGACCGGATCGATCTCCAGCTTGTGTATTCTGCCTTTTCGGCCAGT
58 ATCGACAACACGTAGGGGAGGACCGGATCGATCTCCAGCTTATGCATTCTACCTCTCCGGCCAGT
** *
13903827 TGAGTGCCCATACGT-TCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
123 TGAGCACCC--ACGTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13903889 GCCCCAGTTG
Statistics
Matches: 158, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
184 3 0.02
185 35 0.22
186 4 0.03
188 3 0.02
189 1 0.01
191 87 0.55
192 22 0.14
193 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (184 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGGGACAGTAGGATCGACAA
CACGTAGGGGAGGACCGGATCGATCTCCAGCTTATGCATTCTACCTCTCCGGCCAGTTGAGCACC
CACGTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAA
Found at i:13904077 original size:26 final size:26
Alignment explanation
Indices: 13904047--13904099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13904037 GTTGACTTAG
*
13904047 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
13904073 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13904099 G
1 G
13904100 ATCAAATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13908942 original size:26 final size:26
Alignment explanation
Indices: 13908906--13908959 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13908896 GTTGGCTTAG
13908906 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13908932 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13908958 GC
1 GC
13908960 TTAGATCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13909317 original size:26 final size:26
Alignment explanation
Indices: 13909287--13909339 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13909277 GTTGACTTAG
* *
13909287 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
* *
13909313 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
13909339 G
1 G
13909340 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAATCTAA
Found at i:13909825 original size:26 final size:26
Alignment explanation
Indices: 13909788--13909840 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13909778 GTTGGCTTAG
13909788 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
13909814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13909840 G
1 G
13909841 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13910093 original size:159 final size:157
Alignment explanation
Indices: 13909878--13910168 Score: 422
Period size: 159 Copynumber: 1.8 Consensus size: 157
13909868 TAGGACCAAT
13909878 AGCAGGATCGACAACACGTAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
1 AGCAGGATCGACAACACGTAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
*
13909943 CGG-TTGAGCACCCGCACGCTCATGTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCT
66 CGGCTT-AGCACCAGCACGCTCATGTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCT
13910007 AAGATCAGACCGGACCAAGGGTTGCAAC
130 AAGATCAGACCGGACCAAGGGTTGCAAC
* ** *
13910035 AGCAGGATCGACAGCACGTAGGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAACACGTA--GGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCG
* * * ** * * * *
13910100 ATCGGCTTAGCGCTAGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTC
64 ACCGGCTTAGCACCAGCACGCTCATGTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTC
13910165 TAAG
129 TAAG
13910169 CATACGAAGT
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
157 19 0.16
159 96 0.82
160 2 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCAGGATCGACAACACGTAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
CGGCTTAGCACCAGCACGCTCATGTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
AGATCAGACCGGACCAAGGGTTGCAAC
Found at i:13910179 original size:26 final size:26
Alignment explanation
Indices: 13910142--13910194 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13910132 GTTGGCTTAG
* **
13910142 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13910168 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13910194 G
1 G
13910195 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13910389 original size:26 final size:26
Alignment explanation
Indices: 13910353--13910403 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
13910343 TGACTTAGGC
*
13910353 ATACGGAGTTCATCCCCAATCTAAGT
1 ATACGAAGTTCATCCCCAATCTAAGT
* *
13910379 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAATCTAAG
13910404 ATCGAATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGT
Found at i:13910678 original size:159 final size:158
Alignment explanation
Indices: 13910379--13910720 Score: 388
Period size: 159 Copynumber: 2.2 Consensus size: 158
13910369 CAATCTAAGT
* * ** * * *
13910379 ATACGAAGTTCATTCCCA-GTCTAAGATCGAATCAGACCGAGGGTTGCGGTAGCAGGATCGGTAG
1 ATACGAAGTTCATT-CCATGTCTAAGACCCAGCCGGACCGAGGGTTGCGGCAGCAGGATCGGAAG
* * * * * ** *
13910443 CACGCAAGGGGGATCGGGACGATCCTCAGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCC
65 CACGCAAGGGGGACCGGGACGATCCCCAGCTTACGCATTCTACCTCTCCAGCCGAATGAGCGACC
13910508 GCACGCCCGTTTCGTGGGTTGGCTTAGAG-
130 GCACGCCCGTTTCGTGGGTTGGCTTAG-GC
* * * *
13910537 GTACGGAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CGGCAAG
1 ATACGAAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGCGGCAGCAGGATCGG-AAG
* *
13910601 CACGCAGAGGGGGACCGGGTCGATCCCC-GACTTATGCATTCTACCTCTCC-GACCGAATGAGCG
65 CACGCA-AGGGGGACCGGGACGATCCCCAG-CTTACGCATTCTACCTCTCCAG-CCGAATGAGCG
* *
13910664 ACCGCACGCTCGTTTCGTGGTTTGGCTTAGGC
127 ACCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
13910696 ATACGAAGTTCATTCCATGTCTAAG
1 ATACGAAGTTCATTCCATGTCTAAG
13910721 CATACAGAGT
Statistics
Matches: 153, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
157 6 0.04
158 54 0.35
159 93 0.61
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
ATACGAAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGCGGCAGCAGGATCGGAAGC
ACGCAAGGGGGACCGGGACGATCCCCAGCTTACGCATTCTACCTCTCCAGCCGAATGAGCGACCG
CACGCCCGTTTCGTGGGTTGGCTTAGGC
Found at i:13910731 original size:26 final size:26
Alignment explanation
Indices: 13910694--13910746 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13910684 TTTGGCTTAG
13910694 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13910720 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
13910746 G
1 G
13910747 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13911777 original size:26 final size:26
Alignment explanation
Indices: 13911741--13911793 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13911731 GTTGGCTTAG
13911741 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13911767 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13911793 G
1 G
13911794 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13912151 original size:26 final size:26
Alignment explanation
Indices: 13912121--13912173 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13912111 GTTGGCTTAG
* *
13912121 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
13912147 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
13912173 G
1 G
13912174 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:13912455 original size:159 final size:159
Alignment explanation
Indices: 13912285--13912650 Score: 400
Period size: 158 Copynumber: 2.3 Consensus size: 159
13912275 CCCACACACC
* * * * *
13912285 CGTTTCGTGGGTTTGCTTAGGCGTAGGGACTTCATTCCATGTCTAAGCCCCAG-CCGGATTGAAG
1 CGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAAG
** ** * * *
13912349 GTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACCGAGCCGATCCCTGGCTTGGGCATTAC-
66 GTTGCAGCAGCCAGATCGACAGCACACAG-GGGGGACCGAGCCGAACCCCGGCTTGCGCATT-CT
* ** * *
13912413 GCCTCTCCGGTCGGCTCAGCGCCCGAACGCT
129 CCCTCTCCGACCGACTCAGCGCCCCAACGCT
*** *
13912444 CGTTTCGTGGG-TTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAG-ATTGGATCGGACTGA
1 CGTTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGACCGGACTGA
* * *
13912506 GGGTTGCAGCAGCCAGATCGACAGCACACAGGGGGGATCGGGCCGAACCCCGGCTTGCGCATTCT
64 AGGTTGCAGCAGCCAGATCGACAGCACACAGGGGGGACCGAGCCGAACCCCGGCTTGCGCATTCT
* * *
13912571 CCCTCTCTGACCGACTGAGCGCCCCTACGCT
129 CCCTCTCCGACCGACTCAGCGCCCCAACGCT
* *
13912602 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13912651 TATGGAGTTC
Statistics
Matches: 171, Mismatches: 29, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 93 0.54
159 73 0.43
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
CGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAAG
GTTGCAGCAGCCAGATCGACAGCACACAGGGGGGACCGAGCCGAACCCCGGCTTGCGCATTCTCC
CTCTCCGACCGACTCAGCGCCCCAACGCT
Found at i:13912672 original size:26 final size:26
Alignment explanation
Indices: 13912622--13912674 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13912612 GTTGGCTTAG
*
13912622 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
13912648 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13912674 G
1 G
13912675 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13912854 original size:26 final size:26
Alignment explanation
Indices: 13912818--13912870 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13912808 CTTGGCTTAG
13912818 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13912844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13912870 G
1 G
13912871 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13913896 original size:158 final size:159
Alignment explanation
Indices: 13913620--13914035 Score: 441
Period size: 157 Copynumber: 2.6 Consensus size: 159
13913610 GGGAGATCGG
* * * * *
13913620 GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTC-AGG
1 GCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGG
* * * ** *
13913684 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT-AATTCCTAGTCAGACCGAGGGTTGTGGCAG
66 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAATCCTACTCAGACCGAGGGTTACGGCAA
**
13913748 CGGGATCGACAGCACAG-AGAGAGGGACCGA
131 CAAGATCGACAGCA-AGCAGAG-GGGACCGA
* * * ** *
13913778 GTCGATCCCTAACTTGCGCATTATGCCTCTTTGGCTGGCTCAGCGCCCGCACGCTCATTTCGTGG
1 GCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGG
* * * *
13913843 GTTGACTTAGGCATACGGTGTTCATTCCCA-GTCTAAAATCC-ACT-GGACTGAGGGTTACGGCA
66 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAAATCCTACTCAGACCGAGGGTTACGGCA
* * *
13913905 ACAAGATCGACAGCATGCAGAGGGGATCGG
130 ACAAGATCGACAGCAAGCAGAGGGGACCGA
* * * * * * * *
13913935 GCCAATCCCCGACTTGTGTATTCTGCCTCTCCGG-TCGGTTGAGCGCCCGTACGTTCGTTTCGTG
1 GCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGCGCCCGCACGCTCATTTCGTG
13913999 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
13914036 GCATACGGAG
Statistics
Matches: 210, Mismatches: 42, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
156 4 0.02
157 86 0.41
158 81 0.39
159 31 0.15
160 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (159 bp):
GCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAATCCTACTCAGACCGAGGGTTACGGCAA
CAAGATCGACAGCAAGCAGAGGGGACCGA
Found at i:13914039 original size:26 final size:26
Alignment explanation
Indices: 13914010--13914062 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13914000 GTTGGCTTAG
13914010 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13914036 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13914062 G
1 G
13914063 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13914344 original size:13 final size:13
Alignment explanation
Indices: 13914326--13914350 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13914316 TGCGCATTAT
13914326 GCCTCTCCGGTCA
1 GCCTCTCCGGTCA
13914339 GCCTCTCCGGTC
1 GCCTCTCCGGTC
13914351 GGTTGAGCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCTCTCCGGTCA
Found at i:13914737 original size:159 final size:159
Alignment explanation
Indices: 13914416--13914920 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 159
13914406 TCCAGTATAA
* * * *
13914416 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGATC-G
* * *
13914479 TAGCATGCAGGA-GGGA-CTGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAG
64 TAGCATGCAGGAGGGGATC-GGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAG
* * *
13914542 CGCCCGCGCGTC-CGTTTCGTTGGTTGGCTTAG
128 CGCCCGCAC-TCTCGTTTCGTGGGTTGACTTAG
* * * * * * * *
13914574 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA-ACCGAGGGTTGTGGCAGCAAGACCAGT
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGATC-GT
* * * * * *
13914638 AGCATGCAGAAGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTTCGGCCAGCTCAGTG
65 AGCATGCAGGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCG
* * * *
13914703 CCTGCATTCTCGTTTCATGGGTTGACTTAT
130 CCCGCACTCTCGTTTCGTGGGTTGACTTAG
*
13914733 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGATCG-
* * * * ** ** *
13914796 TAGCACGTAGGGGGGGATCAGGTCGATCCCCAACTTGTGCATTCTACCTCTTCGGTCGGCTGAGC
64 TAGCATGCAGGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGC
* *
13914861 GCCCGCACGCTCGTTTCGCGGGTT-AGCTTAG
129 GCCCGCACTCTCGTTTCGTGGGTTGA-CTTAG
13914892 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
13914921 TACGGAGTTC
Statistics
Matches: 277, Mismatches: 59, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 66 0.24
159 203 0.73
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGTA
GCATGCAGGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCGC
CCGCACTCTCGTTTCGTGGGTTGACTTAG
Found at i:13914942 original size:26 final size:26
Alignment explanation
Indices: 13914892--13914944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13914882 GTTAGCTTAG
*
13914892 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
13914918 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
13914944 G
1 G
13914945 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:13920882 original size:26 final size:26
Alignment explanation
Indices: 13920846--13920898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13920836 GTTGACTTAG
13920846 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13920872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13920898 G
1 G
13920899 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13921350 original size:158 final size:157
Alignment explanation
Indices: 13920872--13921371 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 157
13920862 CCCAGTCTAA
* ** * * *
13920872 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGGGTCGAGGGTT-ACGGCAGCAGTATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGA-GGCAGTAGGATCGA
* * * * * *
13920935 CAGC-CGCA-GGGGGACAAGGCCAATCTTTGGCTTGCGCATTCTGCCTCTTCGACCGGCCGAGCG
64 CAGCACGCAGGGGGGACGA-GCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
*
13920998 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
13921028 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACTGAGGGTTGTGGCAGTGGGATCGACG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGAGGCAGTAGGATCGACA
* * * * * * *
13921093 GCATGCAGAGGGGGACCGGGCTGATCCTTGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCAC
66 GCACGCAG-GGGGGA-CGAGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * *
13921158 CCGTACACTCATTTTGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
13921187 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGAGACAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGAGGCAGTAGGATCGAC
** * *
13921251 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGA-CGAGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
** * *
13921316 TTGCACGCACGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
13921345 GCATACGTAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13921372 CATACGAAGT
Statistics
Matches: 271, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
155 3 0.01
156 47 0.17
157 6 0.02
158 89 0.33
159 122 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGAGGCAGTAGGATCGACA
GCACGCAGGGGGGACGAGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13921374 original size:26 final size:26
Alignment explanation
Indices: 13921345--13921397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13921335 GTTGGCTTAG
*
13921345 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
13921371 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13921397 G
1 G
13921398 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13921607 original size:12 final size:12
Alignment explanation
Indices: 13921590--13921632 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
13921580 CGAGGGTTAT
13921590 GGCAGCAGGACC
1 GGCAGCAGGACC
13921602 GGCAGCAGGACC
1 GGCAGCAGGACC
*
13921614 GGCAGC-GAGATC
1 GGCAGCAG-GACC
13921626 GGCAGCA
1 GGCAGCA
13921633 CACAGAGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 1 0.04
12 27 0.96
ACGTcount: A:0.26, C:0.30, G:0.42, T:0.02
Consensus pattern (12 bp):
GGCAGCAGGACC
Found at i:13922256 original size:159 final size:158
Alignment explanation
Indices: 13921823--13922580 Score: 688
Period size: 159 Copynumber: 4.8 Consensus size: 158
13921813 ACAGTAAGAT
* * * * * * * ** *
13921823 CGACAGCATGCAGAGGGGATCGGGTCGATCCCCGGCATGCGCATTCTACCTCTCTGGTCGACTGA
1 CGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTCA
* * * * * *
13921888 GCACCCTACACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
66 GCGCCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * *
13921953 AGCCAGATCGAGGGTTGTGGTAGCGAGATC
130 AGCCGGATCGAGGGTTGTGGCAGCGGGA-C
* ** * * * *
13921983 TGTGA-CACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGTTGA
1 CGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTCA
* * * * * * * *
13922047 GTGCTCGCATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAA
66 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* *
13922112 GCCGGATCGAGGATTGTGGCAGTGGGAC
131 GCCGGATCGAGGGTTGTGGCAGCGGGAC
* * * * * *
13922140 CGACAGCACGTAGAAGGGGATCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCAGCCGGTTC
1 CGACAGCACGCAG-AGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTC
* * * **
13922205 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCC-TAGTCTAAG-AT
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCC
* * * *
13922268 CAGATCGGACCGAGGGTTGCGACAGC----C
129 CAG-CCGGATCGAGGGTTGTGGCAGCGGGAC
* * * * * *
13922295 AGATCAGCACGCAGAGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTA
1 CGA-CAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTC
* *
13922360 AGTGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* *
13922425 AGTCGGA-CTGAGGGTTGTGGCAGCAGGAC
130 AGCCGGATC-GAGGGTTGTGGCAGCGGGAC
* * * * * * * * * * *
13922454 TGGCAGCACGTAGAGGGGGACTGGGCTGATCCTCGGCTTACGCATTATGCCTTTCCGATTGATTC
1 CGACAGCACGCAGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTC
* * * *
13922519 AGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
13922581 ATACGGAGTT
Statistics
Matches: 483, Mismatches: 101, Indels: 29
0.79 0.16 0.05
Matches are distributed among these distances:
154 1 0.00
155 116 0.24
156 13 0.03
157 3 0.01
158 95 0.20
159 250 0.52
160 5 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTCA
GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
GCCGGATCGAGGGTTGTGGCAGCGGGAC
Found at i:13922409 original size:314 final size:314
Alignment explanation
Indices: 13921988--13922579 Score: 812
Period size: 314 Copynumber: 1.9 Consensus size: 314
13921978 AGATCTGTGA
* * * * * *
13921988 CACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGTTGAGTGCTC
1 CACGCAGAGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTGCCC
* * * *
13922053 GCATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGA
66 GCACGCCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGA
** *
13922118 -TCGAGGATTGTGGCAGTGGGACCGACAGCACGTAGAAGGGGA-TCGGGCCGATCCCCGGCTTGC
131 CT-GAGGATTGTGGCAGCAGGACCGACAGCACGTAGAAGGGGACT-GGGCCGATCCCCGGCTTAC
* * * * *
13922181 GTATTATGCCTCTTCAG-CCGGTTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATAT
194 GCATTATGCCT-TTCAGACCGATTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
13922245 GGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCCAGATCAG
258 GGAGTTCATCCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCCAGATCAG
* *
13922302 CACGCAGAGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTGCCC
1 CACGCAGAGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTGCCC
* * * *
13922367 GCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
66 GCACGCCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGA
* * * * * *
13922432 CTGAGGGTTGTGGCAGCAGGACTGGCAGCACGTAGAGGGGGACTGGGCTGATCCTCGGCTTACGC
131 CTGAGGATTGTGGCAGCAGGACCGACAGCACGTAGAAGGGGACTGGGCCGATCCCCGGCTTACGC
* ** *
13922497 ATTATGCCTTTCCGATTGATTCAGCACTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
196 ATTATGCCTTTCAGACCGATTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
13922562 GTTCATCCCCAGTCTAAG
261 GTTCATCCCCAGTCTAAG
13922580 CATACGGAGT
Statistics
Matches: 239, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
313 4 0.02
314 233 0.97
315 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (314 bp):
CACGCAGAGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTGCCC
GCACGCCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGA
CTGAGGATTGTGGCAGCAGGACCGACAGCACGTAGAAGGGGACTGGGCCGATCCCCGGCTTACGC
ATTATGCCTTTCAGACCGATTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATCCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCCAGATCAG
Found at i:13922589 original size:26 final size:26
Alignment explanation
Indices: 13922553--13922605 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13922543 GTTGACTTAG
13922553 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13922579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13922605 G
1 G
13922606 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13929173 original size:159 final size:159
Alignment explanation
Indices: 13928945--13929408 Score: 490
Period size: 159 Copynumber: 2.9 Consensus size: 159
13928935 CAGCACGCAG
* * *
13928945 GGGGGATCGGGCCGATCCCCGGCTTTCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTATGCC
1 GGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTACGCT
* ** *
13929010 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGATCGAGG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGG
*
13929074 GTTGTGGCAGCGGGACCGACAGT-ACGTAGA
130 GTTGTGGCAGCAGGACCGACA-TCACGTAGA
* * * * * * * * * *
13929104 GGGGGACCGGGCCGATCCCCGACTTGCGCATTATCCCTTTTCGGTCTGCTCAACACCCGTACGCT
1 GGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTACGCT
* ** * * ** *
13929169 CGTTTCATGGGTTAACTTATGCATACGGAGTTCATTCCA-GTGTAAG-ATCAGACCGGGACCAAG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACC-GGACCGAG
* ** * * * *
13929232 CGTTACGACAGCAGGATCAATATCACGTAGA
129 GGTTGTGGCAGCAGGACCGACATCACGTAGA
* * * * * *
13929263 -GGGGATCGAGTCGATCCTCGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
1 GGGGGATCGGGCCGATCCCCGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTACGCTC
13929327 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-GACCGGACCGAGGG
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGGG
*
13929391 TTGTGGTAGCAGGACCGA
131 TTGTGGCAGCAGGACCGA
13929409 TAGCAGGATC
Statistics
Matches: 236, Mismatches: 63, Indels: 14
0.75 0.20 0.04
Matches are distributed among these distances:
157 90 0.38
158 34 0.14
159 112 0.47
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GGGGGATCGGGCCGATCCCCGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCGAGGG
TTGTGGCAGCAGGACCGACATCACGTAGA
Found at i:13929560 original size:26 final size:26
Alignment explanation
Indices: 13929530--13929581 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13929520 GTTGACTTAG
13929530 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13929556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13929582 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13929751 original size:26 final size:26
Alignment explanation
Indices: 13929715--13929767 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13929705 GTTGGCTTAG
13929715 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13929741 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13929767 G
1 G
13929768 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13930478 original size:26 final size:26
Alignment explanation
Indices: 13930449--13930500 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13930439 GTTGACTTAG
13930449 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13930475 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13930501 TATTAGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13930670 original size:26 final size:26
Alignment explanation
Indices: 13930634--13930686 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13930624 GTTGGCTTAG
13930634 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13930660 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13930686 G
1 G
13930687 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13931393 original size:26 final size:26
Alignment explanation
Indices: 13931364--13931415 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
13931354 GTTGACTTAG
13931364 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13931390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13931416 TATCAGATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13933296 original size:158 final size:155
Alignment explanation
Indices: 13932817--13933308 Score: 542
Period size: 159 Copynumber: 3.1 Consensus size: 155
13932807 CCCAGTCTAA
** * *
13932817 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGATCGACA
* * * * * *
13932882 GCATGCAGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCC
66 GCACGAAGAGGGAC-AGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCAGG-CGGCTGAGCGCCC
13932947 GCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
13932974 GCATAGGGAGTTAATT-CCATGTCTAAGCCCCAG-CCGAACCGAGGATTATGGCAGCGGGATCAA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTATGGTAGCAGGATCGA
* * * * *
13933037 CAGCAC-ACAGAGGGAGACCAGGTCGATCCCCGGCTTACGCATTATGCCTCTTAGGCTGGCTCAG
64 CAGCACGA-AGA-GG-GA-CAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCAGGC-GGCTGAG
* * *
13933101 CACCCGCACGCTCATTTCGTGGGTTGACTTAG
124 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
13933133 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGATAGAAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGATCGACA
* * * * *
13933198 GCACGTAAGAGGGATC-GGACCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGACTGAACGC
66 GCACG-AAGAGGGA-CAGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCAGG-CGGCTGAGCGC
13933262 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
13933291 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13933309 ATGTCAAGCA
Statistics
Matches: 272, Mismatches: 50, Indels: 25
0.78 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 54 0.20
158 89 0.33
159 120 0.44
160 7 0.03
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGATCGACA
GCACGAAGAGGGACAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCAGGCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:13933700 original size:26 final size:26
Alignment explanation
Indices: 13933670--13933724 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
13933660 GTTGACTTAG
13933670 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
13933696 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
13933722 GCA
1 GCA
13933725 CACAGGGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:13934023 original size:26 final size:26
Alignment explanation
Indices: 13933974--13934026 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13933964 GTTGGCTTAG
* *
13933974 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
13934000 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
13934026 G
1 G
13934027 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:13934726 original size:26 final size:26
Alignment explanation
Indices: 13934696--13934748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13934686 GTTGACTTAG
13934696 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
13934722 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13934748 G
1 G
13934749 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13935202 original size:158 final size:157
Alignment explanation
Indices: 13934722--13935224 Score: 512
Period size: 159 Copynumber: 3.2 Consensus size: 157
13934712 CCCAGTCTAA
* * * *
13934722 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACTGGACCAAGGGTTGCGACAGTAGGATCGGC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGC
* * * * * * *
13934786 AGCACGCA-GAGGGGAGT-GGGCCAATCCCCGACTTACGGATTCTACCTCTCCGACCGGCTGAGC
65 AGCACGTAGGA-GGGA-TCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCG-GCAGCTGAGC
* * *
13934849 ACCCCCACACCCATTTCGTGGGTTGGCTTAG
127 ACCCACACACTCGTTTCGTGGGTTGGCTTAG
* * * ** * ** *
13934880 GCATAGGGAGTTAATTCCATGTCTAAGCCCCAG-CTAGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGC
* * * * * * * * *
13934944 AGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTGCGCGTTATGCCTCTCTGGCTAGCTCAACG
65 AGCACGTAG-GAGGGATCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGGC-AGCTGAGCA
* *
13935009 CCCACACGCTCGTTTCGTGGGTTGACTTAG
128 CCCACACACTCGTTTCGTGGGTTGGCTTAG
* * * *
13935039 GCATACGAAGTTCATTCCCTGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCA
*
13935104 GCACGTAGGAGGGATCGGGCCAATCCCCGACTTGTGCATTATGCCTCTCCGGCAGACTGAGCACC
66 GCACGTAGGAGGGATCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGGCAG-CTGAGCACC
* *
13935169 CGCACACTCGTTTCGTGGGTTGGCTTAT
130 CACACACTCGTTTCGTGGGTTGGCTTAG
13935197 GCATAC-AGAGTTTCATTCCATGTCTAAG
1 GCATACGA-AG-TTCATTCCATGTCTAAG
13935225 CATGTGGAGT
Statistics
Matches: 273, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 131 0.48
159 135 0.49
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGATCGGCA
GCACGTAGGAGGGATCGGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGGCAGCTGAGCACCC
ACACACTCGTTTCGTGGGTTGGCTTAG
Found at i:13935970 original size:26 final size:26
Alignment explanation
Indices: 13935934--13935983 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13935924 GACTTAGGCA
*
13935934 TACGGAGTTCA-TCCCTAGTCTAAGCT
1 TACGAAGTTCATTCCC-AGTCTAAGCT
13935960 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
13935984 ATCAAACTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:13936429 original size:158 final size:155
Alignment explanation
Indices: 13935968--13936456 Score: 412
Period size: 159 Copynumber: 3.1 Consensus size: 155
13935958 CTTACGAAGT
* * * * * *
13935968 TCATTCCCA-GTCTAAGATCAAACTAGACCAAGGTTTGCGGCAGCAAGATTGGCAGCACGCAGGG
1 TCATT-CCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGG
* * * * *
13936032 GGACCGGTCGATCCCTGACTTAG-GCATTCTGCCTCTCCAGG-CGACTGAGTGCCTGCACGCTCA
65 GGACCGGGCGAT-CCTGACTT-GCGCATTATGCCTCTCC-GGTCGGCTGAGTGCCCGCACGCTCG
* *
13936095 TTTTGTGGGTTGGCTTAGGCATAGGGAGC
127 TTTTGTGGGTTGGCTTAGGCATACGGAGA
* ** ** *** * * * *
13936124 TTATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGACCAACAACACGTAAAG
1 TCATTCCATGTCTAAG-ATCAGACTAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACG--CAG
** * * * * * * * *
13936188 GAAGACCGAGCCGATCCCCGACTTGCACATTATGCCCCTCCGGTCGGGTCAGCGCCCACACGCTC
63 GGGGACCG-GGCGAT-CCTGACTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTC
** *
13936253 GTTTCATGGGTTGACTTAGGCATACGGAGA
126 GTTTTGTGGGTTGGCTTAGGCATACGGAGA
*
13936283 TCATTCCCA-GTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAAGATCGACAGCATGCAGGG
1 TCATT-CCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA-GG
* * * * *
13936347 GGGACCGGGCTGATACTTAGCTTGCGCATTATACCTCTCCGGTTGGCTGAGTGCCCGCACGTTCG
64 GGGACCGGGC-GATCCTGA-CTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCG
*
13936412 TTTTGTGGGTTGGCTTAGGCATACGGAGT
127 TTTTGTGGGTTGGCTTAGGCATACGGAGA
*
13936441 TTATTCCATGTCTAAG
1 TCATTCCATGTCTAAG
13936457 CATACAGAGT
Statistics
Matches: 250, Mismatches: 70, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
155 3 0.01
156 35 0.14
157 10 0.04
158 96 0.38
159 103 0.41
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (155 bp):
TCATTCCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGG
GACCGGGCGATCCTGACTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTT
GTGGGTTGGCTTAGGCATACGGAGA
Found at i:13936827 original size:26 final size:26
Alignment explanation
Indices: 13936797--13936849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13936787 GTTGACTTAG
13936797 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13936823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13936849 G
1 G
13936850 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13937020 original size:355 final size:349
Alignment explanation
Indices: 13936191--13937193 Score: 896
Period size: 367 Copynumber: 2.9 Consensus size: 349
13936181 CGTAAAGGAA
* * * * * * *
13936191 GACCGAGCCGATCCCCGACTTGCACATTATGCCCCTCCGGTCGGGTCAGCGCCCACACGCTCGTT
1 GACCGAGCCGAT-CCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTT
* * * *
13936256 TCATGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAAGATCAGA-CTAGACCGAGGGTTG
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTG
* * * *
13936320 TG--GCA-G-CAAGATCGACAGCATGCAGGGGGGACCGGGCTGATACTTAGCTTGCGCATTATAC
129 TGTAGCAGGACAAGATCGACAGCACGCAGGGGGGACCGGGCTAATACCTAGCTTGCACATTATAC
*** * ** * * * *
13936381 CTCTCCGGTTGGCTGAGTGCCCGCACGTTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTTATT
194 CTCTCCGGCCAGCTGAGGGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
* * ** **
13936446 CCATGTCTAAGCATACAGAGTTCATTCCCAGTTTAAGATCGAACTGGGTCGAGGGTTACGGTAGT
259 CCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGACTCGAGGGTTACGACAGT
13936511 AGGACTAGCAACAGGATCGGCAGCACACAGGGGG
324 AGGACT----ACA-GAT---CAGCACACAGGGGG
* * ** *
13936545 GATCGAGCCGATCCCGAGCTTACCCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTT
1 GACCGAGCCGATCCCG-GCTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTT
** *** **
13936610 TCGTGGGTTGGCTTAGGCATACAAAGTTCATTCTGTGTCTAAGCCCCAG-TCGGACCGAGGGTTG
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCGAGGGTTG
* * *
13936674 TGGTAGCAGGACCGGTAACGGGATCGATAGCACGCAGAGGGGGACCGGGCTAATCCCTGGCTTGC
129 T-GTAGCAGGA-C---AA---GATCGACAGCACGCAG-GGGGGACCGGGCTAATACCTAGCTTGC
* * *
13936739 ACATTATGCCTCTTCGGCCAGCTGAGGGCCCGCATGCTT-GTTTCATGGGTTGACTTAGGCATAC
185 ACATTATACCTCTCCGGCCAGCTGAGGGCCCGCACG-TTCGTTTCATGGGTTGACTTAGGCATAC
* *
13936803 GAAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAG
249 GAAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACAGACTCGAG
*
13936866 GGTTACGACAGTAGGA-T-C-GAT-AGCACGCAGGGGG
312 GGTTACGACAGTAGGACTACAGATCAGCACACAGGGGG
** * * *
13936900 GACCGAGCCGATCCTCGGCTTATGCATTCTGCCTCTTCGGTCGGTTGAGCGCTCGCACGCTCGTT
1 GACCGAGCCGATCC-CGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTT
*
13936965 TCGTGGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAAGATCAGATCGGACCGA-GGTT-T
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGT
* * * * * * * * * * *
13937028 GCAGTA-G-CAGGATCGACAGCACGCAGGAGGGACTGGG-TCGATCCCCAACTTGCGCATTCTAC
130 GTAGCAGGACAAGATCGACAGCACGCAGGGGGGACCGGGCT-AATACCTAGCTTGCACATTATAC
* * ** * *
13937090 CTCTCCAGCCGGCTGAGCACCCGCACGCTT-GTTTCTTGGGTT-AGCTTAGGCATGCGAAGTTCA
194 CTCTCCGGCCAGCTGAGGGCCCGCACG-TTCGTTTCATGGGTTGA-CTTAGGCATACGAAGTTC-
* * *
13937153 AT-CCATGTCTAAACATACGGAGTTCATTCTCAGTCTAAGAT
256 ATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
13937194 TTTGAGCCAC
Statistics
Matches: 532, Mismatches: 92, Indels: 62
0.78 0.13 0.09
Matches are distributed among these distances:
341 5 0.01
342 110 0.21
343 17 0.03
346 1 0.00
349 1 0.00
351 1 0.00
352 4 0.01
353 5 0.01
354 103 0.19
355 116 0.22
356 2 0.00
357 3 0.01
358 1 0.00
359 3 0.01
360 1 0.00
361 1 0.00
363 2 0.00
366 15 0.03
367 131 0.25
368 10 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (349 bp):
GACCGAGCCGATCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTG
TAGCAGGACAAGATCGACAGCACGCAGGGGGGACCGGGCTAATACCTAGCTTGCACATTATACCT
CTCCGGCCAGCTGAGGGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCC
ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGACTCGAGGGTTACGACAGTAG
GACTACAGATCAGCACACAGGGGG
Found at i:13937115 original size:158 final size:158
Alignment explanation
Indices: 13936823--13937152 Score: 374
Period size: 158 Copynumber: 2.1 Consensus size: 158
13936813 CCCAGTCTAA
* * *
13936823 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
* * ** * * * * * * * *
13936888 GCACGCAGGGGGGACCGAGCCGATCCTCGGCTTATGCATTCTGCCTCTTCGGTCGGTTGAGCGCT
66 GCACGCAGGAGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCAGCCGGCTGAGCACC
*
13936953 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTAGCTTAG
* * * * * *
13936981 GCATACGGAGTTGATTCCCAGTCTAAGATCAGATCGGACCGAGGTTTGC-AGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CAGCAGGATCGAC
* * * *
13937045 AGCACGCAGGAGGGACTGGGTCGATCCCCAACTTGCGCATTCTACCTCTCCAGCCGGCTGAGCAC
65 AGCACGCAGGAGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCAGCCGGCTGAGCAC
* *
13937110 CCGCACGCTTGTTTCTTGGGTTAGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTAGCTTAG
* *
13937139 GCATGCGAAGTTCA
1 GCATACGGAGTTCA
13937153 ATCCATGTCT
Statistics
Matches: 140, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
157 1 0.01
158 139 0.99
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGAGGGACCGAGCCGATCCCCAACTTACGCATTCTACCTCTCCAGCCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTAGCTTAG
Found at i:13937279 original size:26 final size:26
Alignment explanation
Indices: 13937249--13937301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13937239 GTTGACTTAG
*
13937249 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13937275 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13937301 G
1 G
13937302 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.