Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 102 of 402
Found at i:13937580 original size:159 final size:158
Alignment explanation
Indices: 13937316--13938582 Score: 821
Period size: 159 Copynumber: 7.9 Consensus size: 158
13937306 GACCAGACCA
* * * * *
13937316 AGGGTTGCGGCAGTAGGATCGATAGCATGCAGA-GGGGACCAGGCCGATCCCCGGCTTACGCATT
1 AGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACC-GGGCGATCCCCGGCTTGCGCATT
* * * * * * *
13937380 CTACCTCTCTGGCCGGTTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
65 ATGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
*
13937445 CATTCCATGTCTAAGCCCCAGTCGGATCG
130 CATTCCATGTCTAAGCCCCAGCCGGATCG
* * ** * *
13937474 AAGGTTATGGCAGGGGGATCGATAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATT
1 AGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGGG-CGATCCCCGGCTTGCGCATT
* * * * **
13937539 ATGCCTCTCCGGCTAGCTCAGCAACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTT
65 ATGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
** *
13937604 CATTCC-TAGTCTAAG-ATCGGACCGGATCG
130 CATTCCAT-GTCTAAGCCCCAG-CCGGATCG
* * * *
13937633 AGGGTTACGGTAGCAGGATCGGTAGCACGCAGA-GGGGACCAGGCTGATCCCCGGCTTACGCATT
1 AGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGC-GATCCCCGGCTTGCGCATT
* * * ** * * *
13937697 CTGCCTCTCCAG-TCGACTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
65 ATGCCTCTCCGGCT-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * * *
13937761 TCATTCCGTGTCTAAGCCCTAGTCGAACCG
129 TCATTCCATGTCTAAGCCCCAGCCGGATCG
* * *** * * *
13937791 AGGGTT-GGTGTAATGGGATAG-TCAGCACGCAGAGGGGGATCGGGCTGAACCCCGGCTTGCGCA
1 AGGGTTACG-GCAGCAGGATCGAT-AGCACGCAGAGGGGGACCGGGC-GATCCCCGGCTTGCGCA
* * * * * * * * * *
13937854 TTATGCCTTTTCGATCAGG-TCAGCACCCGCACGCTCATTTCATGGGATGACTTAGGCATACAGA
63 TTATGCCTCTCCG-GCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * ** * *
13937918 ATTCATTCCCA-GTCTGAGATCAAACCGGA-CTG
127 GTTCATT-CCATGTCTAAGCCCCAGCCGGATC-G
* * * * * * * *
13937950 AGGGTTGCGACAGCAGGATCGATAGCACACAGA-AGGGACCAGGCCGTTCCCTGGCTTACGCATT
1 AGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACC-GGGCGATCCCCGGCTTGCGCATT
* * * * * *
13938014 CTACCTCTCC-GATCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
65 ATGCCTCTCCGGCT-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
**** *
13938078 TCATTCCATGTCTAAGATTGAACCGGA-CTG
129 TCATTCCATGTCTAAGCCCCAGCCGGATC-G
* * * *
13938108 AGGGTTGCGACAGCAAGACCAGTAGCAGGATCGATAGCACGTAGGGGGGGACTGGGCCGATCCCT
1 AGGGTT---AC-G---G--C---AGCAGGATCGATAGCACGCAGAGGGGGACCGGG-CGATCCCC
* * * * *
13938173 GGCTTGCGTATTTTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
53 GGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
13938238 GCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTG
118 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCG
** * * **
13938279 AGGGTTGTGGCAG-TGAGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCAT
1 AGGGTTACGGCAGCAG-GATCGATAGCACGCAGAGGGGGACCGGGC-GATCCCCGGCTTGCGCAT
* * * * * * * * * *
13938343 TATGCCTCTCCAGCCGACTCACCTCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATGCGGAGT
64 TATGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
** * * * *
13938408 TCATTCTCAT-TCTAAG-ATCGGATCGAACCG
129 TCATTC-CATGTCTAAGCCCCAG-CCGGATCG
* * * ** * *
13938438 AGGGTTGCGGTAGTAGGATCGATAGCATACA-AGGGGGGACCGGGCCGATCCTC-GCTTGTGCAT
1 AGGGTTACGGCAGCAGGATCGATAGCACGCAGA-GGGGGACCGGG-CGATCCCCGGCTTGCGCAT
* * * * * * *
13938501 TCTGTCTCTCC-GATCGACTGAGCTCCCGTACCGCTCGTTTCGTGGG-TGGCTTAGGCATAC-AA
64 TATGCCTCTCCGGCT-GGCTGAGCACCCGCA-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
*
13938563 GTTCATCTCCATGTTTAAGC
127 GTTCAT-TCCATGTCTAAGC
13938583 TCTGGAGTTC
Statistics
Matches: 855, Mismatches: 205, Indels: 97
0.74 0.18 0.08
Matches are distributed among these distances:
157 20 0.02
158 296 0.35
159 397 0.46
160 10 0.01
161 1 0.00
162 2 0.00
164 1 0.00
167 2 0.00
170 21 0.02
171 104 0.12
172 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGGGTTACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCGATCCCCGGCTTGCGCATTA
TGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGCCGGATCG
Found at i:13937858 original size:317 final size:316
Alignment explanation
Indices: 13937275--13938093 Score: 1033
Period size: 317 Copynumber: 2.6 Consensus size: 316
13937265 CCCAGTCTAA
* * * *
13937275 GCATAC-GGAGTTCATT-CTCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGA
1 GCATACAGAAGTTCATTCCT-AGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCAGGATCGA
* * * * *
13937338 TAGCATGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGTTGAGCA
64 TAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTC-CGTCGGCTGAGCG
13937403 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * *
13937468 GGATCGAAGGTTATGGCAGGGGGATCGATAGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTG
193 GAACCGAAGGTTATGGCAAGGGGATAGATAGCACGCAGAGGGGGATCGGGTCGAACCCCGGCTTG
* * * *
13937533 CGCATTATGCCTCTCCG-GCTAGCTCAGCAACCGCACGCTCGTTTCGTGGGTTGACTTAG
258 CGCATTATGCCTCTCCGATC-AGCTCAGCAACCGCACGCTCATTTCATGGGATGACTTAG
* * *
13937592 GCATACA-AAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGGT
1 GCATACAGAAGTTCATTCCTAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCAGGATCGAT
* * * *
13937656 AGCACGCAGAGGGGACCAGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGTGC
65 AGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCC-GTCGGCTGAGCGC
* * * * *
13937721 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCTAGTCG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * *
13937786 AACCGAGGGTT-GGTGTAATGGGATAG-TCAGCACGCAGAGGGGGATCGGG-CTGAACCCCGGCT
194 AACCGAAGGTTATG-GCAAGGGGATAGAT-AGCACGCAGAGGGGGATCGGGTC-GAACCCCGGCT
* * * *
13937848 TGCGCATTATGCCTTTTCGATCAGGTCAGCACCCGCACGCTCATTTCATGGGATGACTTAG
256 TGCGCATTATGCCTCTCCGATCAGCTCAGCAACCGCACGCTCATTTCATGGGATGACTTAG
* * ** *
13937909 GCATACAGAA-TTCATTCCCAGTCTGAGATCAAACCGGACTGAGGGTTGCGACAGCAGGATCGAT
1 GCATACAGAAGTTCATTCCTAGTCTAAGATCGGACCGGAC-GAGGGTTGCGGCAGCAGGATCGAT
* * * *
13937973 AGCACACAGAAGGGACCAGGCCGTTCCCTGGCTTACGCATTCTACCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCG-TCGGCTGAGCGC
* *
13938038 TCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
13938094 ATTGAACCGG
Statistics
Matches: 430, Mismatches: 62, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
316 5 0.01
317 420 0.98
318 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACAGAAGTTCATTCCTAGTCTAAGATCGGACCGGACGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGTCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAA
CCGAAGGTTATGGCAAGGGGATAGATAGCACGCAGAGGGGGATCGGGTCGAACCCCGGCTTGCGC
ATTATGCCTCTCCGATCAGCTCAGCAACCGCACGCTCATTTCATGGGATGACTTAG
Found at i:13938307 original size:488 final size:487
Alignment explanation
Indices: 13937642--13938581 Score: 1125
Period size: 488 Copynumber: 1.9 Consensus size: 487
13937632 GAGGGTTACG
* *
13937642 GTAGCAGGATCGGTAGCACGCAGAGGGGACCAGGCTGATCCCCGGCTTACGCATTCTGCCTCTCC
1 GTAGCAGGATCGATAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
* * * *
13937707 AGTCGACTGAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGT
66 AGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * *
13937772 CTAAGCCCTAGTCGAACCGAGGGTTGGTGTAATGGGATAGTCAGCACGCAGAGGGGGATCGGGCT
131 CTAAGCCCCAGTCGAACCGAGGGTTGGTGCAATGAGACAGGCAGCACGCAGAGGGGGACCGGGCT
* * * * * *
13937837 GAACCCCGGCTTGCGCATTATGCCTTTTCGATCAG-GTCAGCACCCGCACGCTCATTTCATGGGA
196 GAACCCCGGCTTGCGCATTATGCC-TCTCCAGCAGACTCACCACCCGCACACTCATTTCATGGGA
* * *
13937901 TGACTTAGGCATACAGAATTCATTCCCAGTCTGAGATCAAACCGGACTGAGGGTTGCGACAGCAG
260 TGACTTAGGCATACAGAATTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCAG
* * *
13937966 GATCGATAGCACAC-AGAAGGGACCAGGCCGTTCCCTGGCTTACGCATTCTACCTCTCCGATCGG
325 GATCGATAGCACACAAGAAGGGACCAGGCCGAT-CCTCGCTTACGCATTCTACCTCTCCGATCGA
* *
13938030 CTGAGCGCTCGCA-CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
389 CTGAGCGCCCGCACCGCTCATTTCGTGGG-TGGCTTAGGCATAC-AAGTTCATCTCCATGTCTAA
13938093 GATTGAACCGGACTGAGGGTTGCGACAGCAAGACCA
452 GATTGAACCGGACTGAGGGTTGCGACAGCAAGACCA
* * ** * * * * *
13938129 GTAGCAGGATCGATAGCACGTAGGGGGGGACTGGGCCGATCCCTGGCTTGCGTATTTTGCCTCTT
1 GTAGCAGGATCGATAGCACGCA-GAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTC
* * * *
13938194 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATG
65 CAGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* ** * *
13938259 TCTAAGCCCCAGTCGGATTGAGGGTT-GTGGCAGTGAGACCGGCAGCACGCAGAGGGGGACCGGG
130 TCTAAGCCCCAGTCGAACCGAGGGTTGGT-GCAATGAGACAGGCAGCACGCAGAGGGGGACCGGG
* * * * * *
13938323 CTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCACCTCTCGCACACTCGTTTCGTGGG
194 CTGAACCCCGGCTTGCGCATTATGCCTCTCCAGCAGACTCACCACCCGCACACTCATTTCATGGG
* * * * * * ** * ** *
13938388 TTGACTTAGGCATGCGGAGTTCATTCTCATTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGTA
259 ATGACTTAGGCATACAGAATTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCA
* ** * ** **
13938453 GGATCGATAGCATACAAGGGGGGACCGGGCCGATCCTCGCTTGTGCATTCTGTCTCTCCGATCGA
324 GGATCGATAGCACACAAGAAGGGACCAGGCCGATCCTCGCTTACGCATTCTACCTCTCCGATCGA
* * * *
13938518 CTGAGCTCCCGTACCGCTCGTTTCGTGGGTGGCTTAGGCATACAAGTTCATCTCCATGTTTAAG
389 CTGAGCGCCCGCACCGCTCATTTCGTGGGTGGCTTAGGCATACAAGTTCATCTCCATGTCTAAG
13938582 CTCTGGAGTT
Statistics
Matches: 373, Mismatches: 74, Indels: 11
0.81 0.16 0.02
Matches are distributed among these distances:
487 35 0.09
488 310 0.83
489 28 0.08
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (487 bp):
GTAGCAGGATCGATAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
AGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGTCGAACCGAGGGTTGGTGCAATGAGACAGGCAGCACGCAGAGGGGGACCGGGCT
GAACCCCGGCTTGCGCATTATGCCTCTCCAGCAGACTCACCACCCGCACACTCATTTCATGGGAT
GACTTAGGCATACAGAATTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGCAGG
ATCGATAGCACACAAGAAGGGACCAGGCCGATCCTCGCTTACGCATTCTACCTCTCCGATCGACT
GAGCGCCCGCACCGCTCATTTCGTGGGTGGCTTAGGCATACAAGTTCATCTCCATGTCTAAGATT
GAACCGGACTGAGGGTTGCGACAGCAAGACCA
Found at i:13939480 original size:26 final size:26
Alignment explanation
Indices: 13939433--13939482 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
13939423 GGCTTAGGCA
*
13939433 TACGGAGTTCATTCCATGTCTAAGCT
1 TACGGAGTTCATTCCATATCTAAGCT
13939459 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
13939483 ATTTCGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCT
Found at i:13940198 original size:26 final size:26
Alignment explanation
Indices: 13940161--13940213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13940151 GTTGACTTAG
13940161 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13940187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13940213 G
1 G
13940214 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13940771 original size:318 final size:318
Alignment explanation
Indices: 13940187--13941031 Score: 939
Period size: 318 Copynumber: 2.7 Consensus size: 318
13940177 CCCAGTCTAA
* * * * * *
13940187 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTACGGTAGTAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGTAGGATCGACA
* * * * * * *
13940252 GCACGTAGG-GGGGACCGAGCCGATCCCCGGCTCGTGCATTCTGCCTCTCTGACCGGCTAAGCGC
66 GCACGTAGGAGGGGAACGAGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
*
13940316 CAGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCTATGTCTAAGCCCCAGCCG
131 C-GCACGCCCATTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *
13940381 GACCGAGGGTTGT-GCTAGTGGGACCGACAGCACACAGAGGGGGACTGGGCTGGTCCCCGGCTTG
195 GACCGAGGGTTGTGGCTAGCGGGACCGACAGCACACAGAGGGGGACTGGGCTGATCCCCAGCTTG
* * *
13940445 CCCATTATGCCTCTCCG-GTCAGCTCAGCGCCCACACGCTCATTTCATGAGTTGACTTAG
260 CCCATTATGCCTCCCCGACT-AGCTCAGCGCCCACACGCTCATTTCATGAGTTGACTTAC
* * *
13940504 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGTGTTGCAGTAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATC-GAGGGTTGCGGTAGTAGGATCGAC
* * * * *
13940568 AGCACGTGGGAGGGGAATGAGTCAATCCCCGGCTTGCGCATTCTACCTCTCCAATCGGCTGAGCG
65 AGCACGTAGGAGGGGAACGAGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
* * ** * * *
13940633 CTCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCTCAGCA
130 C-CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * **
13940698 GGACCAAGGGTTGTGGC-AGCGGGACTGGCAGCACGTAGAGGGGGA-TCGGGCTGATCCCCAGCT
194 GGACCGAGGGTTGTGGCTAGCGGGACCGACAGCACACAGAGGGGGACT-GGGCTGATCCCCAGCT
* * *** * * * * *
13940761 TGCGCATTATGCCTCCCCGACTGGCTCAGCGCTGGCATGCTCGTTTCTTGGGTTGAGTTAC
258 TGCCCATTATGCCTCCCCGACTAGCTCAGCGCCCACACGCTCATTTCATGAGTTGACTTAC
** * *
13940822 GCATGTAGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGTAGGATCGACA
** * * * * ** * * * *
13940887 ATACGCATGAGGGGAGCGGGTCGATCCCCAACTTGCGCATTCTACCTATCCGGCCGACTGAGCAC
66 GCACGTAGGAGGGGAACGAGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGC-G
* * * *
13940952 CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAA-AGTTCATTCCAAGTCTAAGCCCCAGCC
130 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA-AAGAGTTCATTCCATGTCTAAGCCCCAGCC
*
13941016 GGATCGAGGGTTGTGG
194 GGACCGAGGGTTGTGG
13941032 TAACAGAACT
Statistics
Matches: 432, Mismatches: 87, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
316 1 0.00
317 63 0.15
318 362 0.84
319 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (318 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGTAGGATCGACA
GCACGTAGGAGGGGAACGAGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCTAGCGGGACCGACAGCACACAGAGGGGGACTGGGCTGATCCCCAGCTTGC
CCATTATGCCTCCCCGACTAGCTCAGCGCCCACACGCTCATTTCATGAGTTGACTTAC
Found at i:13940792 original size:159 final size:159
Alignment explanation
Indices: 13940250--13940839 Score: 461
Period size: 159 Copynumber: 3.7 Consensus size: 159
13940240 GTAGGATCGG
* * * * * * *
13940250 CAGCACGTAG-GGGGGACCGAGCCGATCCCCGGCTCGTGCATTCTGCCTCTCTGAC-CGGCTAAG
1 CAGCACGTAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACTCGGCTCAG
* * *
13940313 CGC-CAGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCTATGTCTAAGCCCCA
66 CGCTC-GCACGCCCATTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCTCA
* *
13940377 GCCGGACCGAGGGTTGTGCTAGTGGGACCGA
130 GCAGGACCGAGGGTTGTGC-AGTGGGACTGA
** * * * * *
13940408 CAGCACACAGAGGGGGA-CTGGGCTGGTCCCCGGCTTGCCCATTATGCCTCTCCG-GTCAGCTCA
1 CAGCACGTAGAGGGGGATC-GAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACTCGGCTCA
* * * * * * *
13940471 GCGCCCACACGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATC
65 GCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAAGAGTTCATT-CCATGTCTAAGCCTC
* * * * * *
13940534 GGACCA-GACTGAGTGTTGCAGTAGTAGGA-TCGA
129 --AGCAGGACCGAGGGTTG-TGCAGTGGGACT-GA
* * * * * * *
13940567 CAGCACGTGGGAGGGGAAT-GAG-TCAATCCCCGGCTTGCGCATTCTACCTCTCC-AATCGGCTG
1 CAGCACGT-AGAGGGGGATCGAGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCGACTCGGCTC
* ** *
13940629 AGCGCTCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCTC
64 AGCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCTC
* * *
13940694 AGCAGGACCAAGGGTTGTGGCAGCGGGACTGG
129 AGCAGGACCGAGGGTTGT-GCAGTGGGACTGA
* * *
13940726 CAGCACGTAGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCCCCGACT-GGCTCAG
1 CAGCACGTAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACTCGGCTCAG
* * * * * * **
13940790 CGCTGGCATGCTCGTTTCTTGGGTTGAG-TTACGCATGTAGAGTTCATTCC
66 CGCTCGCACGCCCATTTCATGGGTTG-GCTTAGGCATAAAGAGTTCATTCC
13940840 CAATCTAAGA
Statistics
Matches: 328, Mismatches: 82, Indels: 43
0.72 0.18 0.09
Matches are distributed among these distances:
158 25 0.08
159 283 0.86
160 20 0.06
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CAGCACGTAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACTCGGCTCAG
CGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCTCAG
CAGGACCGAGGGTTGTGCAGTGGGACTGA
Found at i:13941194 original size:26 final size:26
Alignment explanation
Indices: 13941165--13941217 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13941155 GTTGACTTAG
* *
13941165 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
* *
13941191 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
13941217 G
1 G
13941218 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAATCTAA
Found at i:13941768 original size:317 final size:317
Alignment explanation
Indices: 13941191--13942000 Score: 969
Period size: 317 Copynumber: 2.5 Consensus size: 317
13941181 CCCAGTCTAA
* * *
13941191 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGGCAACAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGATA
* *
13941256 GCATGCAGGGGGGA-CTGAGCTGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGTTGAGTGC
66 GCATGCAGGGGGGACCTGA-CCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGTGC
* * *
13941320 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATCTCTAAGCCCCAGCCG
130 CCACACGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCTATCTCTAAGCCCCAACCG
* * * * * * *
13941385 GACTGAGGGTTGTGGTAGCGGGACTGGCAGTAAGCAGAGGTGGACTAGGCCGATCCCTAGCTTGT
195 GACCGAGGGTTGTGGCAGCGGGACCGGCAGCAAGCAGAGGGGGACCAGGCCGATCCCGAGCTTGT
* * * * * * * *
13941450 GCATTATTCCTCTTCGATTGGCTCAGCGCCCGTACGCTCGTTTTATGGGTTGACTTAT
260 GCATTATGCCTCTCCCATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * * * *
13941508 TCATACAGAGTTCATTCCCAGTCTAAGTTCGGACCGGACCAAGGGTTGCGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGATA
* * * * * *
13941573 GCACGCAGGGGGGACCAGACCGATCCCCGGCTTGCACATTCTGCCTCTTCGGTTGGCTGAGTGCC
66 GCATGCAGGGGGGACCTGACCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGTGCC
* * * *
13941638 CACACGCCTATTTCGTGGGTTGGCTTAGATATAGGGAGTTCATTGC-ATGTCTAAGCCCTAACCG
131 CACACGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATT-CTATCTCTAAGCCCCAACCG
* * *
13941702 GACCGAGGGTTTTGGCAGCGGGACCGGTAGCATGCAGAGGGGGACCAGGCCGATCCTCGA-CTTG
195 GACCGAGGGTTGTGGCAGCGGGACCGGCAGCAAGCAGAGGGGGACCAGGCCGATCC-CGAGCTTG
13941766 TGCATTATGCCTCTCCCATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
259 TGCATTATGCCTCTCCCATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
** * * * * **
13941825 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGATA
* * ** * * * ***
13941890 GCATGTAGGGGGGACTTGGTCGATCCCCGACTTGCGCATTCTGCCACTGACCGACCGGCTGAACC
66 GCATGCAGGGGGGACCTGACCGATCCCCGACTTGCACATTCTGCCTCT--CCGATCGGCTGAGTG
* * * * * *
13941955 CCCGCACGCTCATTTCCTGGGTTGGCTTAGGCATATGGAGTCCATT
129 CCCACACGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATT
13942001 TCATGTCTAC
Statistics
Matches: 410, Mismatches: 78, Indels: 8
0.83 0.16 0.02
Matches are distributed among these distances:
317 358 0.87
318 6 0.01
319 46 0.11
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGATA
GCATGCAGGGGGGACCTGACCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGTGCC
CACACGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCTATCTCTAAGCCCCAACCGG
ACCGAGGGTTGTGGCAGCGGGACCGGCAGCAAGCAGAGGGGGACCAGGCCGATCCCGAGCTTGTG
CATTATGCCTCTCCCATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
Found at i:13941892 original size:159 final size:158
Alignment explanation
Indices: 13941198--13942000 Score: 641
Period size: 159 Copynumber: 5.1 Consensus size: 158
13941188 TAAGCATACA
* * *
13941198 GAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGGCAACAGGATCGATAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCATGCA
* * * * *
13941263 GGGGGGA-CTGAGCTGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACG
66 GGGGGGACCAG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
* *
13941327 CCCATTTCGTGGGTTGGCTTAGGCATAGG
130 CTCATTTCATGGGTTGGCTTAGGCATAGG
* * ** * * * ** * *
13941356 GAGTTCATT-CTATCTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGTAGCGGGA-CTGGCAGTAA
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-GATAGCAT
* * * * * * * * *
13941418 GCAGAGGTGGACTAGGCCGAT-CCCTAGCTTGTGCATTATTCCTCTTCGATTGGCTCAGCGCCCG
63 GCAG-GGGGGACCAGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
* * * * ** **
13941482 TACGCTCGTTTTATGGGTTGACTTATTCATACA
126 CACGCTCATTTCATGGGTTGGCTTAGGCATAGG
* * * * * * *
13941515 GAGTTCATTCCCAGTCTAAGTTCGGACCGGACCAAGGGTTGCGGCAACAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCATGCA
* * * * * * * *
13941580 GGGGGGACCAGACCGATCCCCGGCTTGCACATTCTGCCTCTTCGGTTGGCTGAGTGCCCACACGC
66 GGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
* **
13941645 -CTATTTCGTGGGTTGGCTTAGATATAGG
131 TC-ATTTCATGGGTTGGCTTAGGCATAGG
* ** * * * *
13941673 GAGTTCATT-GCATGTCTAAGCCCTA-ACCGGACCGAGGGTTTTGGCAGCGGGACCGGTAGCATG
1 GAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCATG
* * * * *
13941736 CAGAGGGGGACCAGGCCGATCCTCGACTTGTGCATTATGCCTCTCCCATCGGCTCAGCGCCCGCA
64 CAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA
* * * *
13941801 CACTCGTTTCATGGGTTGACTTAGGCATATG
128 CGCTCATTTCATGGGTTGGCTTAGGCATAGG
* * ** * * *
13941832 GAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGATAGCATGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCATGCA
** * * * * *
13941897 GGGGGGACTTGGTCGATCCCCGACTTGCGCATTCTGCCACTGACCGACCGGCTGAACCCCCGCAC
66 GGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCT--CCGATCGGCTGAGCGCCCGCAC
* *
13941962 GCTCATTTCCTGGGTTGGCTTAGGCATATG
129 GCTCATTTCATGGGTTGGCTTAGGCATAGG
*
13941992 GAGTCCATT
1 GAGTTCATT
13942001 TCATGTCTAC
Statistics
Matches: 491, Mismatches: 135, Indels: 36
0.74 0.20 0.05
Matches are distributed among these distances:
157 6 0.01
158 198 0.40
159 230 0.47
160 57 0.12
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCATGCA
GGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
TCATTTCATGGGTTGGCTTAGGCATAGG
Found at i:13942382 original size:26 final size:26
Alignment explanation
Indices: 13942353--13942405 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13942343 GTTGACTTAG
* *
13942353 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
* *
13942379 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
13942405 G
1 G
13942406 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAATCTAA
Found at i:13943026 original size:316 final size:316
Alignment explanation
Indices: 13942379--13943194 Score: 1003
Period size: 316 Copynumber: 2.6 Consensus size: 316
13942369 CCCAGTCTAA
* *
13942379 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCTG-C
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC-GAC
* * * * * * *
13942443 AGCACGCAGGGGGGACTGAGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGTTGAGTGC
65 AGCACGCAGGGGGGCCAGA-TCGATCCCCGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCGC
* ** * * *
13942508 CTGCATGCCCATTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGTCG
129 CTGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * * *
13942573 AACCGAGTGTTGTGGCTGCGGGACTGGTAGCAAGCAGAGGTGGACCGAGCCGATCCCTGGCTTCC
194 AACCGAGGGTTGTGGCAGCGAGACTGGAAGCAAGCAGAGGGGGACCGAGCCGATCCCCGACTTCC
* * * ** *
13942638 GCATTATGCCTTTTCGGTCGGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAT
259 GCATTATGCCTCTCCCGTCGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
* *
13942696 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
13942761 GCACGCA-GGGGGCCAGACCGATCCCCGACTTATGCATTTTACCTCTTCGACTGGCTGAGCGCCT
66 GCACGCAGGGGGGCCAGATCGATCCCCGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCGCCT
* *
13942825 GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCC-AG
131 GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-
* * * *
13942889 ACCGAGGGTTTTGGCAGCGAGACTGGCAAGCACGCAGAGGGGGACC-AGGTCGATCCCCGACTTG
195 ACCGAGGGTTGTGGCAGCGAGACTGG-AAGCAAGCAGAGGGGGACCGA-GCCGATCCCCGACTTC
* *
13942953 TGCATTATGCCTCTCCCGTCGGCTCAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAG
258 CGCATTATGCCTCTCCCGTCGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
* * * * **
13943012 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTACGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
** * * * *
13943077 GCACGCAGGGGGGACTGGGTCGATCCTCGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGG-CCAGATCGATCCCCGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
13943142 CGCACG-CTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
130 TGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
13943195 CGCATACGGA
Statistics
Matches: 424, Mismatches: 68, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
314 1 0.00
315 113 0.27
316 152 0.36
317 73 0.17
318 85 0.20
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGCCAGATCGATCCCCGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCGCCT
GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
CCGAGGGTTGTGGCAGCGAGACTGGAAGCAAGCAGAGGGGGACCGAGCCGATCCCCGACTTCCGC
ATTATGCCTCTCCCGTCGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
Found at i:13943140 original size:158 final size:157
Alignment explanation
Indices: 13942379--13943194 Score: 576
Period size: 158 Copynumber: 5.2 Consensus size: 157
13942369 CCCAGTCTAA
* * **
13942379 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCTG-C
1 GCATACAGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATC-GAC
* * * ** * * * * *
13942443 AGCACGCAGGGGGGA-CTGAGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGTTGAGTG
64 AGCACGCAGGGGGGACCAG-GTCGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCG
* * * * * *
13942507 CCTGCATGCCCATTTCGTGGGTTGGCTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * ** * * * * ** * * *
13942537 GCATAGGGAGTTCATTCCATCTCTAAGCCCCAGTCGA-ACCGAGTGTTGTGGCTGCGGGA-CTGG
1 GCATACAGAGTTCATTCCA-GTCTAAG-ATCGGACCAGACCGAGGGTTACGGCAGCAGGATC-GA
* * * * * * ** * * **
13942600 TAGCAAGCAGAGGTGGACC-GAGCCGATCCCTGGCTTCCGCATTATGCCTTTTCGGTCGGCTCAG
63 CAGCACGCAG-GGGGGACCAG-GTCGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAG
* * *
13942664 CGCCCGTACGCTCGTTTTGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *
13942696 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
** * * * * * *
13942761 GCACGCA-GGGGG-CCAGACCGATCCCCGACTTATGCATTTTACCTCTTCGACTGGCTGAGCGCC
65 GCACGCAGGGGGGACCAGGTCGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCC
* *
13942824 TGCACGC-CTGTTTCGTGGGTTGGCTTAG
130 CGCACGCTC-GTTTCGTGGGTTGACTTAG
** * * ** **
13942852 GCATAGGGAGTTCATTGCATGTCTAAG-CCCTAGCCAGACCGAGGGTTTTGGCAGC-GAGA-CTG
1 GCATACAGAGTTCATTCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTACGGCAGCAG-GATC-G
* *
13942914 GCAAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGTGCATTATGCCTCTCCCG-TCGGCTC
62 AC-AGCACGCAG-GGGGGACCAGGTCGATCCCCGACTTGTGCATTATGCCTCT-CCGACCGGCTC
* * *
13942978 AGCGCCCGTATGCTCGTTTCATGGGTTGACTTAG
124 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* **
13943012 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTACGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCC-AGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
** * * * * *
13943077 GCACGCAGGGGGGACTGGGTCGATCCTCGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGCGCC
65 GCACGCAGGGGGGACCAGGTCGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCC
* *
13943142 CGCACGCTCGTTTCTTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
*
13943170 GCATACGGAGTTCATTCCATGTCTA
1 GCATACAGAGTTCATTCCA-GTCTA
13943195 CGCATACGGA
Statistics
Matches: 515, Mismatches: 117, Indels: 52
0.75 0.17 0.08
Matches are distributed among these distances:
155 7 0.01
156 100 0.19
157 23 0.04
158 141 0.27
159 128 0.25
160 108 0.21
161 8 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACAG
CACGCAGGGGGGACCAGGTCGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13943264 original size:12 final size:12
Alignment explanation
Indices: 13943247--13943276 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13943237 AGGGCTTGCC
13943247 GCAGCAGGACCA
1 GCAGCAGGACCA
*
13943259 GCAGCAGGATCA
1 GCAGCAGGACCA
13943271 GCAGCA
1 GCAGCA
13943277 TGCAGGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.33, T:0.03
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:13943490 original size:169 final size:171
Alignment explanation
Indices: 13943229--13943538 Score: 421
Period size: 169 Copynumber: 1.8 Consensus size: 171
13943219 TAAGATCAGA
* *
13943229 CCGGACTGAGGGCTTGCCGCAGCAGGACCAGCAGCAGGATCAGCAGCATGCAGGGGGGACTGAGT
1 CCGGACTGAGGGCTTGCCGCAGCAGGACCAGCAGCAGGATCAGCAGCATGCAGAGAGGACTGAGT
* * * * * *
13943294 CGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCCTTTCGT-GGT
66 CGATCCTCAGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCCTTTCATGGGT
*
13943358 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAT
131 TGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAT
** * * *
13943399 CCGGACTGAGGG-TTGTGGCAGCAGGACCGGCAGCGGGATC-GACAGCATGCAGAGAGGA-TCGG
1 CCGGACTGAGGGCTTGCCGCAGCAGGACCAGCAGCAGGATCAG-CAGCATGCAGAGAGGACT-GA
* * *
13943461 GTTGATCCTCAGCTTACGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGG
64 GTCGATCCTCAGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCCTTTCATGG
13943526 GTTGACTTAGGCA
129 GTTGACTTAGGCA
13943539 CACGAAGTTC
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
168 2 0.02
169 93 0.77
170 25 0.21
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.21
Consensus pattern (171 bp):
CCGGACTGAGGGCTTGCCGCAGCAGGACCAGCAGCAGGATCAGCAGCATGCAGAGAGGACTGAGT
CGATCCTCAGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCCTTTCATGGGT
TGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAT
Found at i:13944047 original size:157 final size:157
Alignment explanation
Indices: 13943569--13944377 Score: 608
Period size: 159 Copynumber: 5.1 Consensus size: 157
13943559 TAAGCATATA
* * * * *
13943569 GAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACGGTAGTAGGATCGACAACAC-G
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACAG
** * * * * ** * *
13943632 CAGGTAGATCAAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCACCCGCACG
65 -AGGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACG
*
13943697 C-CTGTTTCATGGGTTGGCTTAGGCATAGG
129 CTC-GTTTCATGGGTTGGCTTAGGCATACG
* ** * * * * *
13943726 GAGTTCATTCCATGTTTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAACGGGACCGACAGCACGT
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC--
* ** * * * * * * * * *
13943790 AGAGGGGGATCAGGCCGATCCTTGGCTTACGCATTATGCCTTTTCGGTCAGCTCACCACCCGCAT
63 AGAGGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCAC
* * * *
13943855 GCTCATTTCGTGGGTTGACTTATGCATACG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * *
13943885 GAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACAT
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACAG
* * * * * *
13943949 AGGGGGAACCGGCCAATCCCCGGCTTGCGCATTCTGCCTATCCGGCCGGCTGAGTGCCTGCACGC
65 AGGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGC
* * *
13944014 CCGTTTCATAGGTTGGCTTAGGCATAGG
130 TCGTTTCATGGGTTGGCTTAGGCATACG
* ** * * * * * *
13944042 GAGTTCATTACATGTCTAAGCCCTAG-CCGGACCGAGAGTTGTGGCAGCGGGACCGGCAACACAT
1 GAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC--
* * * * ** * * *
13944106 AGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGATCAGATCAGCGCCCGTAC
63 AGAGGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCAC
* * *
13944171 GCTTGTTTCGTGGGTTGACTTAGGCATACG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * * * *
13944201 GAGTTCATTCC-TAG-CTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGC
1 GAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC-A
* * * * * ** * * *
13944264 GGGGGGGGACTTGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAATTGAGTGCCTGTAC
64 GAGGGGGAAC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCAC
* *
13944329 GCTGGTTTCCTGGGTTGGCTTAGGCATACG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
*
13944359 AAGTTCATTCCATGTCTAA
1 GAGTTCATTCCATGTCTAA
13944378 ACATACGAAG
Statistics
Matches: 499, Mismatches: 136, Indels: 32
0.75 0.20 0.05
Matches are distributed among these distances:
156 5 0.01
157 164 0.33
158 123 0.25
159 202 0.40
160 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACAGA
GGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACG
Found at i:13944142 original size:316 final size:316
Alignment explanation
Indices: 13943569--13944377 Score: 963
Period size: 316 Copynumber: 2.6 Consensus size: 316
13943559 TAAGCATATA
* * * * *
13943569 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGTAGGATCGACAACACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACA
** * * * * ** ** *
13943634 GGTAGATCAAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTTGGCCGGCTGAGCACCCGCACGCC
66 GGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCTGCACGCC
* * * *
13943699 TGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCGGACCGAGGG
131 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGAG
* * * ** *
13943764 TTGTGGCAACGGGACCGACAGCACGTAGAGGGGGATCAGGCCGATCCTTGGCTTACGCATTATGC
196 TTGTGGCAACGGGACCGACAACACATAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGC
* * * * * *
13943829 CTTTTCGGTCAGCTCACCACCCGCATGCTCATTTCGTGGGTTGACTTATGCATACG
261 CTCTCCGATCAGATCACCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * * *
13943885 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACATA
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACA
* * *
13943950 GGGGGAACCGGCCAATCCCCGGCTTGCGCATTCTGCCTATCCGGCCGGCTGAGTGCCTGCACGCC
66 GGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCTGCACGCC
* * *
13944015 CGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCTAGCCGGACCGAGAG
131 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGAG
* * * *
13944080 TTGTGGCAGCGGGACCGGCAACACATAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGC
196 TTGTGGCAACGGGACCGACAACACATAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGC
* * * **
13944145 CTCTCCGATCAGATCAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACG
261 CTCTCCGATCAGATCACCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * *
13944201 GAGTTCATTCCTAG-CTAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACAC-
* * * * * *** *
13944265 GGGGGGGACTTGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAATTGAGTGCCTGTACG
65 AGGGGGAAC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCTGCACG
** * * *
13944330 CTGGTTTCCTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
129 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
13944378 ACATACGAAG
Statistics
Matches: 412, Mismatches: 79, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
315 41 0.10
316 284 0.69
317 87 0.21
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (316 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACA
GGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCTGCACGCC
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGAG
TTGTGGCAACGGGACCGACAACACATAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGC
CTCTCCGATCAGATCACCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
Found at i:13944382 original size:26 final size:26
Alignment explanation
Indices: 13944353--13944403 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13944343 TTGGCTTAGG
13944353 CATACGAAGTTCATT-CCATGTCTAAA
1 CATACGAAGTTCATTCCCA-GTCTAAA
13944379 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
13944404 GATCGGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:13944749 original size:26 final size:26
Alignment explanation
Indices: 13944719--13944771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13944709 GTTTACTTAG
13944719 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
13944745 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
13944771 G
1 G
13944772 ATCTGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:13950966 original size:159 final size:157
Alignment explanation
Indices: 13950658--13951159 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 157
13950648 CCCAGTCTAA
* * * * * * *
13950658 GCATATGGAGTTCATTCCCAGTCAAAGATCAAATCAAAACGAGGGTTGTGGTAGCAGGATCGGCA
1 GCATA-GGAGTTCATTCACAGTCTAAGACCCAACCAGACCGAGGGTTGTGGTAGCAGGAT-GGCA
* * * * * * * * *
13950723 GCACGCAG-GAGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGTTGAGCAC
64 GCACGTAGAGGGGGACCGGGCTAATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * *
13950787 CCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCACATGCTCATTTCATGGGTTGGCTTAG
* * *
13950816 GCATAGGGAGTTCATTGCACA-TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACTGGC
1 GCATA-GGAGTTCATT-CACAGTCTAAGACCCAACCAGACCGAGGGTTGTGGTAGCAGGA-TGGC
* * * * *
13950880 AGCACGTAGAGGGGGATCGGGCTAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGCCTCAGCG
63 AGCACGTAGAGGGGGACCGGGCTAATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
13950945 CCCACATGCTCGTTTCATGGGTTGACTTAA
128 CCCACATGCTCATTTCATGGGTTGGCTTAG
* * * **** * * **
13950975 GCATACGAAGTTTATTCCCAGTCTAAGATTGGACCGGTCCGAGGGTTGCAGTAGCAGGAT--CAG
1 GCATA-GGAGTTCATTCACAGTCTAAGACCCAACCAGACCGAGGGTTGTGGTAGCAGGATGGCAG
* * * * *
13951038 CA-ATACGCAGGGAGGACCGGGCTGATCCCAGGCTTGCGCATTCTGCCCCTCCGGCTGGCTGAGT
65 CACGTA-G-AGGG-GGACCGGGCTAATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
*
13951102 GCCCTCATGCTCATTTCATGGGTTGGCTTAG
127 GCCCACATGCTCATTTCATGGGTTGGCTTAG
*
13951133 GCATAGGAGTTCATTCCCAGTCTAAGA
1 GCATAGGAGTTCATTCACAGTCTAAGA
13951160 TCAGATCGGA
Statistics
Matches: 275, Mismatches: 62, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
155 2 0.01
156 6 0.02
157 24 0.09
158 133 0.48
159 110 0.40
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATAGGAGTTCATTCACAGTCTAAGACCCAACCAGACCGAGGGTTGTGGTAGCAGGATGGCAGC
ACGTAGAGGGGGACCGGGCTAATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
ACATGCTCATTTCATGGGTTGGCTTAG
Found at i:13951866 original size:26 final size:26
Alignment explanation
Indices: 13951830--13951882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13951820 GTTGGCTTAG
13951830 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13951856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13951882 G
1 G
13951883 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13953117 original size:158 final size:158
Alignment explanation
Indices: 13952810--13953106 Score: 393
Period size: 159 Copynumber: 1.9 Consensus size: 158
13952800 ACTGGCATGC
* *
13952810 ACGTAGAGGGGGATCGGGCTAATCCCGGCTTGCGCATTATGCCTCTCCGACCGCCTCAGCGCCTA
1 ACGTAGAGGGGGACCGGGCTAATCCCGGCTTGCGCAGTATGCCTCTCCGACCGCCTCAGCGCCTA
* * ** *
13952875 CATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATTGGACCGGTC
66 CATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
13952940 CGAGGGTTGCAGTAGCAGGATCGACAAT
131 CGAGGGTTGCAGTAGCAGGATCGACAAT
* * * * * * *
13952968 ACGTAG-GGGAGGACCGGGCTGATCCCAGGCTTGCGCAGTCTGCCTCTCCGGCTGGCTGAGTGCC
1 ACGTAGAGGG-GGACCGGGCTAATCCC-GGCTTGCGCAGTATGCCTCTCCGACCGCCTCAGCG-C
* * *
13953032 CT-CATGCTCATTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCAGATCG
63 CTACATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG
13953095 GACCGAGGGTTG
128 GACCGAGGGTTG
13953107 TGATAGCAGG
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
157 3 0.03
158 56 0.47
159 57 0.48
160 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
ACGTAGAGGGGGACCGGGCTAATCCCGGCTTGCGCAGTATGCCTCTCCGACCGCCTCAGCGCCTA
CATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
CGAGGGTTGCAGTAGCAGGATCGACAAT
Found at i:13953792 original size:26 final size:26
Alignment explanation
Indices: 13953756--13953808 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13953746 GTTGGCTTAG
13953756 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13953782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13953808 G
1 G
13953809 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13954499 original size:26 final size:26
Alignment explanation
Indices: 13954463--13954515 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13954453 GTTGACTTAG
13954463 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13954489 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13954515 G
1 G
13954516 GTCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13954844 original size:158 final size:156
Alignment explanation
Indices: 13954627--13955021 Score: 415
Period size: 158 Copynumber: 2.5 Consensus size: 156
13954617 CCCGTATGCC
* * **
13954627 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAG-CCCTAGCCGGACCTAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACC-AG
* * *
13954690 GGTTGTGGCAGCGGGATCGGCAGCACATA-GAGGA-TCGGGTCGATCCCCG-GTTGCGCATCCAT
63 GGTTGTGGCAGCAGGATCGACAGCACATAGGAGGACT-GGGTCGATCCCCGACTTGCGCAT---T
* * *
13954752 ATACCTCTCCGGTCAGCTTAGCG-CCCGCATGCT
124 ATACCTCTCCGATCAGCTGAG-GACCCGCACGCT
* * * *
13954785 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCGGACGGGACCATGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCA-GGG
** * * * * *
13954850 TTGCAGCAGCAGGATCGACAGCACGTAGGGGGGACTGGGTCGGTCCCCGACTTGCGCATTCTGCC
65 TTGTGGCAGCAGGATCGACAGCACATA-GGAGGACTGGGTCGATCCCCGACTTGCGCATTATACC
* *
13954915 TCTCCGATCGGCTGAGGACCCGTACGCT
129 TCTCCGATCAGCTGAGGACCCGCACGCT
* * *
13954943 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AGGG
13955008 TTGTGGCAGCAGGA
65 TTGTGGCAGCAGGA
13955022 CCAGCAGCCG
Statistics
Matches: 196, Mismatches: 32, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 163 0.83
159 6 0.03
160 16 0.08
161 9 0.05
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (156 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAGGGT
TGTGGCAGCAGGATCGACAGCACATAGGAGGACTGGGTCGATCCCCGACTTGCGCATTATACCTC
TCCGATCAGCTGAGGACCCGCACGCT
Found at i:13955171 original size:26 final size:26
Alignment explanation
Indices: 13955134--13955186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13955124 GTTGACTTAG
*
13955134 GCATACGTAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
13955160 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13955186 G
1 G
13955187 ATCAAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13956674 original size:26 final size:26
Alignment explanation
Indices: 13956640--13956691 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13956630 TTGACATAGA
13956640 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
13956666 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
13956692 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:13957180 original size:159 final size:158
Alignment explanation
Indices: 13956750--13957354 Score: 409
Period size: 159 Copynumber: 3.8 Consensus size: 158
13956740 GGAATCGTGC
* * * * *
13956750 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCCCGCATGCCTATTTTGTCG-G
1 CGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGT-GAG
* * * * * * *
13956814 TTGGCTTAGGTATGGGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCGAGGGTTGTGGCAGCG
65 TTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCACC-AGCGGATCGAGGGTTGTGGCAGCA
*
13956879 GGATCGGTAGCACGTTGAAGGGGATCGGGT
129 GGATCGGTAGCACGTTGAAGGGGACCGGGT
* * * * * * * * *
13956909 CGATCCC-CAGCTTGTGCATTATGCCTCTCCGACCGATTCAGCGTCTGCACGCTCATTTCGTGAG
1 CGATCCCTGA-CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGAG
* ** *
13956973 TTGACTTAGGAATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGTGGCAG
65 TTGGCTTAGGAATAGGGAGTTCATT-CCATGTCTAAGCACCAG-C-GGATCGAGGGTTGTGGCAG
*
13957036 TAGGATC-G-A-CA-GTATGCAAGCTGGGACCGGGT
127 CAGGATCGGTAGCACGT-TG-AAG--GGGACCGGGT
* * * * *
13957068 CGGTCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCGTGAAT
1 CGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGAGT
* * * * * *
13957133 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCCAGCAGGATCGACGATTATGGCAGCGG
66 TGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCACCAGC-GGATCGAGGGTTGTGGCAGCAG
* * ** * * *
13957198 GACCTGTAGCACGCAGAGGGGGGCTGAGGT
130 GATCGGTAGCACGTTGAAGGGGACCG-GGT
* * * * * ** * * *
13957228 -AATCCCCGGCTTACGCATGTCTGCCTCTCCGGATTGCGGTGTGAGCGCCCACAGCGCTCGTTTC
1 CGATCCCTGACTTGCGCAT-TCTGCCTCTCC-G---GCCGACTGAGCGCCCGCA-CGCCCATTTC
* * * * * * *
13957292 ATGGGTTGGCTTAGGCATATGGAGTTCATTACCATGTCTAAGCCCCAGTTGGACCGAGGGTTG
60 GTGAGTTGGCTTAGGAATAGGGAGTTCATT-CCATGTCTAAGCACCAG-CGGATCGAGGGTTG
13957355 CGCAAGAGGC
Statistics
Matches: 341, Mismatches: 80, Indels: 43
0.73 0.17 0.09
Matches are distributed among these distances:
155 2 0.01
156 4 0.01
157 5 0.01
158 7 0.02
159 221 0.65
160 22 0.06
161 4 0.01
162 3 0.01
163 1 0.00
164 13 0.04
165 34 0.10
166 25 0.07
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGAGT
TGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCACCAGCGGATCGAGGGTTGTGGCAGCAGG
ATCGGTAGCACGTTGAAGGGGACCGGGT
Found at i:13958172 original size:159 final size:158
Alignment explanation
Indices: 13957725--13958323 Score: 479
Period size: 158 Copynumber: 3.7 Consensus size: 158
13957715 GCACCTAAGG
* * * * * *
13957725 GGGGACCAGGTCGGTCCCC-GACTTGCACATTCTACCTCTTCGGTCGACTGAGCGCCCGCACGCT
1 GGGGACCGGGTCGATCCCCAG-CTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT
* * * * *
13957789 CGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGG
65 CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGG
* * * *
13957854 TTGCGGTAGCAGGATCGATAGCACGTAAG
130 TTGTGGCAGCAGGATCGATAGCACGCAAA
* * * * * *
13957883 GGGGACTGGGTCGATCCCCAGCTTACGCATTCTGCCTCACCGGCCAGCTGAGCGCCCGCATG-TC
1 GGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT-
* * * * * **
13957947 CGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCCTT-CCATGTCTAAGCCCTAG-TCGAACCGAG
65 CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATC-AGATCGAACCGAG
**
13958010 GGTTGTGGCAGTGGGA-CTGATAGCACGCAGAA
128 GGTTGTGGCAGCAGGATC-GATAGCACGCA-AA
* * * * *
13958042 GGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTCTCCGACCGGCTTAGTGCCCGAACGCTC
1 GGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC
* * * **
13958107 GTTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAATCTAAGATCAGATCGGACTAAGGGT
66 GTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGT
** * * ** **
13958172 TGTGATAGTAGGATCGACAGCACATAGG
131 TGTGGCAGCAGGATCGATAGCACGCAAA
* ** * * * * *
13958200 GGGGACCAGACCGATCCCTGGCTAGCGTATTCTGCCTCTCCGATCGGCCTCTCCGACCAGCTGAG
1 GGGGACCGGGTCGATCCC---C-AGC-T-TGC-ACAT-T-C--T--GCCTCTCCGGCCGGCTGAG
*
13958265 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
53 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
13958324 CATATGGAGT
Statistics
Matches: 344, Mismatches: 74, Indels: 33
0.76 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 133 0.39
159 120 0.35
160 5 0.01
161 1 0.00
162 3 0.01
163 1 0.00
164 2 0.01
165 2 0.01
166 1 0.00
169 1 0.00
171 71 0.21
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGT
TGTGGCAGCAGGATCGATAGCACGCAAA
Found at i:13958327 original size:26 final size:26
Alignment explanation
Indices: 13958297--13958349 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13958287 GTTGACTTAG
13958297 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13958323 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13958349 G
1 G
13958350 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13959276 original size:26 final size:26
Alignment explanation
Indices: 13959240--13959290 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13959230 TGGCTTAGGC
13959240 ATAAGGAGTTCATTCC-ATGTCTAAGT
1 ATAAGGAGTTCATTCCTA-GTCTAAGT
13959266 ATAAGGAGTTCATTCCTAGTCTAAG
1 ATAAGGAGTTCATTCCTAGTCTAAG
13959291 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (26 bp):
ATAAGGAGTTCATTCCTAGTCTAAGT
Found at i:13959484 original size:26 final size:26
Alignment explanation
Indices: 13959447--13959497 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13959437 GTTGACTTAG
13959447 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13959473 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
13959498 GGATATGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13959929 original size:11 final size:11
Alignment explanation
Indices: 13959913--13959938 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13959903 CCGAGGTACT
13959913 ATCATCGGAGC
1 ATCATCGGAGC
13959924 ATCATCGGAGC
1 ATCATCGGAGC
13959935 ATCA
1 ATCA
13959939 CCGAAGAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (11 bp):
ATCATCGGAGC
Found at i:13960674 original size:26 final size:26
Alignment explanation
Indices: 13960638--13960690 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13960628 GTTGACTTAG
*
13960638 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
13960664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13960690 G
1 G
13960691 ATCAGACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13960971 original size:159 final size:159
Alignment explanation
Indices: 13960802--13961167 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 159
13960792 CCCGCATGCC
** *
13960802 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCAAGG
1 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCAAGG
* * * * * * *
13960866 GTTGTGGTAGCGAGACCGACAACACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCACATTATA
65 GTTGCGGCAGCAAGACCGACAACACGCAGAGGGGGACCAGGTCAATCCCCGACTTACACATTATA
*
13960931 CCTCTCCAGCCA-GCTCAGCGCCCGAACGCT
130 CCTCTCCAG-CAGGCTCAGCGCCCGAACACT
** * * * ** *
13960961 CGTTTCATGGGTTAACTTAGGCATACTGAGCTCATTCCCA-ATCTAAGATCGGACCAGACCAAGG
1 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCAAGG
** * * * * * * *
13961025 GTTGCGGCAGCAAGATTGACAGCACGCAGGGGGGGACCAGGTCAATCCTCGGCTTACGCATTCTG
65 GTTGCGGCAGCAAGACCGACAACACGCAGAGGGGGACCAGGTCAATCCCCGACTTACACATTATA
* * * * *
13961090 CCTCTCCAGTAGGCTGAGTGCTCGTACACT
130 CCTCTCCAGCAGGCTCAGCGCCCGAACACT
*
13961120 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
13961168 ATACGGAGTT
Statistics
Matches: 164, Mismatches: 39, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
158 5 0.03
159 156 0.95
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGACCAGACCAAGGG
TTGCGGCAGCAAGACCGACAACACGCAGAGGGGGACCAGGTCAATCCCCGACTTACACATTATAC
CTCTCCAGCAGGCTCAGCGCCCGAACACT
Found at i:13961169 original size:26 final size:26
Alignment explanation
Indices: 13961140--13961192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13961130 GTTGGCTTAG
13961140 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13961166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13961192 G
1 G
13961193 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13961384 original size:26 final size:26
Alignment explanation
Indices: 13961348--13961400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13961338 GTTGATTTAG
13961348 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
13961374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
13961400 G
1 G
13961401 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:13963189 original size:26 final size:26
Alignment explanation
Indices: 13963160--13963212 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13963150 GTTAACTTAG
13963160 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
13963186 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13963212 G
1 G
13963213 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13963664 original size:158 final size:156
Alignment explanation
Indices: 13963186--13963687 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 156
13963176 CCCAGTCTAA
* * *
13963186 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACT-GGACCGAGGGTTG-AGCAGCAGGATCGACA
* * * * *
13963251 GCACCCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGACCACC
64 GCACACAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGCCTGACTGAACGCC
* *
13963316 CGCACGCCCGTTTCATGGGTTGGCTTAG
129 CGCACACTCGTTTCATGGGTTGGCTTAG
* * * ** * * * * *
13963344 GCATAGGGAGTTAATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-CTGGACCGAGGGTTG-AGCAGCAGGATCGA-C
* * * * * * *
13963408 AGCACATAGAGGAGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGCC-GGCTCAAT
63 AGCACACAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GCCTGACTGAAC
* * ** * *
13963472 GCCCACACACTCATTTTGTGGGTTGACTTTG
126 GCCCGCACACTCGTTTCATGGGTTGGCTTAG
* * * *
13963503 GCATACGGAGTTCATTCCCAGTCTATGATCGGACTGGATCGAGGGTTGCGCCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACTGGACCGAGGGTTGAG-CAGCAGGATCGACA
* * * * *
13963568 GCACGCAGGGGGGATCGGGCC-AGTCCTCGGCTTGCCCATTCTGCCTCTCCACCTGACTGAGCGC
64 GCACACAGGGGGGACCGGGCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGCCTGACTGAACGC
*
13963632 CTGCACACTCGTTTCATGGGTTGGCTTAG
128 CCGCACACTCGTTTCATGGGTTGGCTTAG
13963661 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
13963688 CATGCGGAGT
Statistics
Matches: 269, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 8 0.03
158 141 0.52
159 115 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACTGGACCGAGGGTTGAGCAGCAGGATCGACAGC
ACACAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGCCTGACTGAACGCCCG
CACACTCGTTTCATGGGTTGGCTTAG
Found at i:13963737 original size:26 final size:26
Alignment explanation
Indices: 13963661--13963730 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
13963651 GTTGGCTTAG
13963661 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
13963687 GCATGCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13963713 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
13963731 CAGTCTAGGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13965586 original size:26 final size:26
Alignment explanation
Indices: 13965556--13965608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13965546 GTTGACTTAG
*
13965556 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTGCATTCCCAATCTAA
*
13965582 GCATATGGAGTGCATTCCCAGTCTAA
1 GCATATGGAGTGCATTCCCAATCTAA
13965608 G
1 G
13965609 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTGCATTCCCAATCTAA
Found at i:13965819 original size:197 final size:196
Alignment explanation
Indices: 13965471--13965899 Score: 500
Period size: 197 Copynumber: 2.2 Consensus size: 196
13965461 GAATCAAGCT
* * * * * * * * **
13965471 GATCCTCAGCTTGCGCATTATGCGTCTCCGACCGGCCTCTCCGACCGACTGAGCGCCCGCATGCT
1 GATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGACCTCTCCGACAGACTGAGCGCCCACACACT
* * **
13965536 CGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATATGGAGTGCATTCCC
66 CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATAAAGAGTGCATTCCC
* * * * *
13965601 AGTCTAAGATCAGATTAGACTGAGGGTTGCGGCAGCAGGACCAGCAGCACGTAGGGGGGACCGAG
131 AGTCCAAGATCAGACTAGACTGAGGGTTACGACAGCAAGACCAGCAGCACGTA-GGGGGACCGAG
13965666 TC
195 TC
* *
13965668 GATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGACCTCTCCGGCAGGCTGAGCGCCCACACACT
1 GATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGACCTCTCCGACAGACTGAGCGCCCACACACT
* * * *
13965733 TGTTTCATGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCTAAGCATAAAGAGTTCATTCT
66 CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC-AATCTAAGCATAAAGAGTGCATTCC
* * * * * * *
13965797 CAGTCCAATATCAGACTAGACTGAGGGTTACGATAGCAAGATCGGTAGCACGTAGGGGGACTGGG
130 CAGTCCAAGATCAGACTAGACTGAGGGTTACGACAGCAAGACCAGCAGCACGTAGGGGGACCGAG
*
13965862 TT
195 TC
* * * *
13965864 GATCTTCGGCTTGTGCGTTCTACCTCTCTGATCGAC
1 GATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGAC
13965900 TGAGCGCCTG
Statistics
Matches: 194, Mismatches: 37, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
196 46 0.24
197 148 0.76
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (196 bp):
GATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGACCTCTCCGACAGACTGAGCGCCCACACACT
CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATAAAGAGTGCATTCCC
AGTCCAAGATCAGACTAGACTGAGGGTTACGACAGCAAGACCAGCAGCACGTAGGGGGACCGAGT
C
Found at i:13966157 original size:159 final size:159
Alignment explanation
Indices: 13965977--13966271 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 159
13965967 AGTCGGACAT
* * * * *
13965977 AGGGTTATGGCAGTGACATCGACAGCATGCAGAGAGGGACCGGGCCGATC-CTTGGCTTGCGTAT
1 AGGGTTATGGCAGTGACATCGACAGCACGCAGAGAAGGACCGGGCCGATCAC-TGACTTACGCAT
* * * * ** *
13966041 TATGCCTTTTCGATCGGTTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
65 TATACCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGT
13966106 TAATTCCTAGTGTAAGATCAGACCAGTCCA
130 TAATTCCTAGTGTAAGATCAGACCAGTCCA
* * * * * *
13966136 AGGGTTGTGGCAGT-AGGATCGACAGCACGTAGGGAAGGATCGGGCCGGTCACTGACTTACGCAT
1 AGGGTTATGGCAGTGA-CATCGACAGCACGCAGAGAAGGACCGGGCCGATCACTGACTTACGCAT
* * * * *
13966200 TCTACCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGT
65 TATACCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGT
*
13966265 TTATTCC
130 TAATTCC
13966272 ATGTCTAAGT
Statistics
Matches: 110, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 1 0.01
159 108 0.98
160 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
AGGGTTATGGCAGTGACATCGACAGCACGCAGAGAAGGACCGGGCCGATCACTGACTTACGCATT
ATACCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTT
AATTCCTAGTGTAAGATCAGACCAGTCCA
Found at i:13966306 original size:26 final size:26
Alignment explanation
Indices: 13966250--13966306 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
13966240 GTGGGTTGGC
* *
13966250 TTAAGCATACGGAGTTTATTCCATGT
1 TTAAGCATACAGAGTTCATTCCATGT
* *
13966276 CTAAGTATACAGAGTTCATTCCCA-GT
1 TTAAGCATACAGAGTTCATT-CCATGT
13966302 TTAAG
1 TTAAG
13966307 ACCAAACCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (26 bp):
TTAAGCATACAGAGTTCATTCCATGT
Found at i:13967568 original size:26 final size:26
Alignment explanation
Indices: 13967538--13967590 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13967528 TGGGTTGAAT
13967538 TAGGCATAC-GAAGTTCATCCCCAGTC
1 TAGGCATACAG-AGTTCATCCCCAGTC
*
13967564 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
13967590 T
1 T
13967591 GAGATTGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:13967856 original size:159 final size:158
Alignment explanation
Indices: 13967652--13968067 Score: 424
Period size: 159 Copynumber: 2.6 Consensus size: 158
13967642 GGACTGAGCT
* * * ** * * *
13967652 GATCCTTGGCTTGTGCATTCTGCCTC-TCTGGCCGGCTGAGTGCCCGTACGCCCATTTCATGGGT
1 GATCCTCGGCTTGCGCATTATGCCTCTTC-GGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGT
* * * * * *
13967716 TGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCAAGGATTGTGACAGCA
* *
13967780 GGACCGACAACATGCAGAGGGGGACCGGGTC
129 GGACCGACAACACGCAG-GGGGGACCGGATC
* *
13967811 GATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAACGCCCGCACGCTCGTTTCATGGGTT
1 GATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTT
** ** * * ** * *
13967876 CACTTAGGCATACAAAGTTTATTCCCA-ATCTAAGATTAGACCAGACCGAGGATTGTGATAGCAG
66 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGATTGTGACAGCAG
** *
13967940 GATTGACAGCACGCAGGGGGGACCGGATC
130 GACCGACAACACGCAGGGGGGACCGGATC
* * * * * * *
13967969 GGTCCCCGACTGGCGTATTTTGCCTCTTTGGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTT
1 GATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTT
*
13968034 GGCTTAGGCATACGGAGTTCATTCCATGCCTAAG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
13968068 CATACGGAGT
Statistics
Matches: 206, Mismatches: 47, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.01
158 93 0.45
159 105 0.51
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
GATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGATTGTGACAGCAGG
ACCGACAACACGCAGGGGGGACCGGATC
Found at i:13968467 original size:159 final size:159
Alignment explanation
Indices: 13968302--13969063 Score: 510
Period size: 159 Copynumber: 4.7 Consensus size: 159
13968292 CGGGACCAGC
*
13968302 AGCACGTAGAGAGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTCCGGCTAGCTCT-GC
1 AGCACGTAG-GAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTAGCTCTAGC
* *
13968366 GCCCGCATGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATTAGAC
65 GCCCGCACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATCAGAC
* * *
13968431 CAGACTGAGGGTTGCGATAGCAGGATCGAC
130 CAGACCGAGGGTTGCGACAGCAGGATCGAT
* * * * * * * *
13968461 AACACGTAGGGGTGGACCGGGCCGAT-CTTCGGCTTGCGCATTCTACCTCTCCAGC-CGAT-TGA
1 AGCACGTAGGAG-GGACCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTCCGGCTAGCTCT-A
* * *** * * **
13968523 GCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATT-CCATGTCTAAGCCCC
63 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCA-GTCTAAG-ATC
*** * * * * * * *
13968587 AG-TTGGACTGAGTGTTGTGGCAGCGGGACCGGT
126 AGACCAGACCGAGGGTTGCGACAGCAGGATCGAT
* * *
13968620 AGCACGTAGAGGGGGATCGGGCCGATCCCAGGCTTGCGCATTATGCCTCTCCGG-TCAGC-CTAG
1 AGCACGTAG-GAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCT-AGCTCTAG
* ** * *
13968683 CGCCCTCACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
64 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATCAGA
* *
13968748 TCAGACCGACGGTTGTC-ACAGCAGGATCGAT
129 CCAGACCGAGGGTTG-CGACAGCAGGATCGAT
** * * * ** * * * *
13968779 AGCACACAGGAGGGGATCGGGCTGGTCCCCAGCTTGTGCATTCTGCCTCTCCGGCTGGCT-AAGC
1 AGCACGTAGGA-GGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTAGCTCTAGC
* * * *
13968843 GCCCACACGCTTC-TTTTGTGGGTTGGCTTA-AGTATAC-AGAGTTCATTCCCAGTCTAAGATCA
65 GCCCGCACGC-TCATTTCGTGGGTTGACTTAGA-CATACGA-AGTTCATTCCCAGTCTAAGATCA
* *
13968905 GACCAGACCGATGGTTGTGGCAGCAAGACTAGCAGCAGGATCGAC
127 GACCAGACCGA-GG--GT---TGC--G---A-CAGCAGGATCGAT
* * * * * * * * * *
13968950 AGCACGCAAGGGGGGACGAGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGAC-CGACT-GA
1 AGCACG-TAGGAGGGAC-CGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTAG-CTCTA
* * *
13969013 GCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCC
63 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCC
13969064 ATTTCTAAGC
Statistics
Matches: 467, Mismatches: 97, Indels: 65
0.74 0.15 0.10
Matches are distributed among these distances:
157 1 0.00
158 14 0.03
159 330 0.71
160 14 0.03
162 2 0.00
164 1 0.00
165 1 0.00
170 1 0.00
171 24 0.05
172 78 0.17
173 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGTAGGAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCTAGCTCTAGCG
CCCGCACGCTCATTTCGTGGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATCAGACC
AGACCGAGGGTTGCGACAGCAGGATCGAT
Found at i:13968822 original size:318 final size:314
Alignment explanation
Indices: 13968132--13968900 Score: 902
Period size: 318 Copynumber: 2.4 Consensus size: 314
13968122 CAGGACCAAT
* * * * * *
13968132 AGCAAGATCGGTAGCACATAAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTCCCTCTTCGG
1 AGCAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTACCTCTCCGG
* * * *
13968197 CCGGCTGAGCGTCCGCACGCTCGTTTCATGGGTTGGTTTGGGTATAGGGAGTTCATTCCATGTCT
65 CCGGCTGAGCGCCCGCACGCTC-TTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCT
13968262 AAGCCCCAGTCTGACGAAAGGTTGTGGCAGCGGGACCAGCAGCACGTAGAGAGGGACCGGGCCGA
129 AAGCCCCAGTCTGACG-AAGGTTGTGGCAGCGGGACCAGCAGCACGTAGAGAGGGACCGGGCCGA
** *
13968327 TCCTTGGCTTGCGCATTATGCCTCTCCGGCTAGCTCTGCGCCCGCATGCTCATTTCGTGGGTTGA
193 TCCCAGGCTTGCGCATTATGCCTCTCCGGCTAGCTCTGCGCCCGCACGCTCATTTCGTGGGTTGA
* * * *
13968392 CTTAGACATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCGAT
258 CTTAGACATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGGTTGCGAC
* * * * * * *
13968449 AGCAGGATCGACAACACGTAGGGGTGGACCGGGCCGATCTTCGGCTTGCGCATTCTACCTCTCCA
1 AGCAGGATCGATAGCACATAGGGG-GGATCGGGCCGATC-CCCGCTTGCGCATTCTACCTCTCCG
** * *
13968514 GCCGATTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTC
64 GCCGGCTGAGCGCCCGCACGCTC-TTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTC
* * * *
13968579 TAAGCCCCAGT-TGGACTG-AGTGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGATCGGGC
128 TAAGCCCCAGTCT-GAC-GAAG-GTTGTGGCAGCGGGACCAGCAGCACGTAGAGAGGGACCGGGC
* **
13968642 CGATCCCAGGCTTGCGCATTATGCCTCTCCGG-TCAGC-CTAGCGCCCTCACGCTGGTTTCGTGG
190 CGATCCCAGGCTTGCGCATTATGCCTCTCCGGCT-AGCTCT-GCGCCCGCACGCTCATTTCGTGG
* * *
13968705 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGACGGTTGTC-AC
253 GTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGGTTG-CGAC
* * * * *
13968767 AGCAGGATCGATAGCACACAGGAGGGGATCGGGCTGGTCCCCAGCTTGTGCATTCTGCCTCTCCG
1 AGCAGGATCGATAGCACATAGG-GGGGATCGGGCCGATCCCC-GCTTGCGCATTCTACCTCTCCG
* * * * * **
13968832 GCTGGCTAAGCGCCCACACGCTTCTTTTGTGGGTTGGCTTAAGTATACAGAGTTCATTCCCA-GT
64 GCCGGCTGAGCGCCCGCACGC-TCTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATT-CCATGT
13968896 CTAAG
127 CTAAG
13968901 ATCAGACCAG
Statistics
Matches: 378, Mismatches: 62, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
317 25 0.07
318 343 0.91
319 10 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (314 bp):
AGCAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTCTACCTCTCCGGC
CGGCTGAGCGCCCGCACGCTCTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAA
GCCCCAGTCTGACGAAGGTTGTGGCAGCGGGACCAGCAGCACGTAGAGAGGGACCGGGCCGATCC
CAGGCTTGCGCATTATGCCTCTCCGGCTAGCTCTGCGCCCGCACGCTCATTTCGTGGGTTGACTT
AGACATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGGTTGCGAC
Found at i:13969475 original size:26 final size:26
Alignment explanation
Indices: 13969424--13969476 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13969414 GTTGGCTTAG
* *
13969424 GCATACGGTGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
13969450 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
13969476 G
1 G
13969477 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:13969633 original size:194 final size:195
Alignment explanation
Indices: 13969192--13969645 Score: 612
Period size: 195 Copynumber: 2.3 Consensus size: 195
13969182 TTCTTGTCGG
* *
13969192 CTGAGCGCCCGCCTGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGGTTCATTCCATGCCTAAG
1 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAG
* * ** * *
13969256 CATACGGAATTCATTCCCAGTCTAAGATTGGACTGGACTTAGGGCTGTAACAGCAGGACCAGCGC
65 CATACGGAATTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGCTGTAACAGCAGGACCAGCAC
* **
13969321 TGGATCGACAGCACGTAAGGGGGATCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCG
130 AGGATCGACAGCACGTAAGGGGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCCGACCG
13969386 A
195 A
* * * *
13969387 CTGAGCGCCCGCACGCTCATTTCCTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
13969452 ATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGA-TCGAGGG-T-TACGACAGCAGGACCAGC
66 ATACGGAATTCATTCCCAGCCTAAGATCGGACCAGACT-GAGGGCTGTA--ACAGCAGGACCAGC
* * * ** * *
13969514 ACAGGATCGATAGCACG-CAGGGGGATCGGGCCAATCCGTGACTTGCGCATTCTGCCTCTCCGGC
128 ACAGGATCGACAGCACGTAAGGGGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCCGAC
*
13969578 CGG
193 CGA
*
13969581 TTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13969646 CCCAGCCGGA
Statistics
Matches: 226, Mismatches: 29, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
193 2 0.01
194 103 0.46
195 120 0.53
196 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (195 bp):
CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGGAATTCATTCCCAGCCTAAGATCGGACCAGACTGAGGGCTGTAACAGCAGGACCAGCACA
GGATCGACAGCACGTAAGGGGGATCGAGCCAATCCCCGACTTACGCATTCTGCCTCTCCGACCGA
Found at i:13970702 original size:77 final size:77
Alignment explanation
Indices: 13970575--13970728 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
13970565 CTTCTCCAGC
**
13970575 CGACTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTA
1 CGACTGAGTGCCCGCATGCTAATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTA
13970640 AGCATACAGAGT
66 AGCATACAGAGT
*
13970652 CGACTGAGTGCCCGCATGCTAATTTCGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGGCTA
1 CGACTGAGTGCCCGCATGCTAATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTA
13970717 AGCATACAGAGT
66 AGCATACAGAGT
13970729 TGCTTCCCAG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (77 bp):
CGACTGAGTGCCCGCATGCTAATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGGCTA
AGCATACAGAGT
Found at i:13970781 original size:27 final size:27
Alignment explanation
Indices: 13970695--13970790 Score: 110
Period size: 26 Copynumber: 3.6 Consensus size: 27
13970685 GGCTTAGGCG
13970695 TACGGAGTTCATT-CCA-TGGCTAAGCA
1 TACGGAGTTCATTCCCAGTGG-TAAGCA
* * *
13970721 TACAGAGTTGC-TTCCCAGT-CTAGGCA
1 TACGGAGTT-CATTCCCAGTGGTAAGCA
*
13970747 TACGGAGTTCATCCCCAGTGGTAAGCA
1 TACGGAGTTCATTCCCAGTGGTAAGCA
13970774 TACGGAGTTCATTCCCA
1 TACGGAGTTCATTCCCA
13970791 TTAAGATCGA
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
25 1 0.02
26 30 0.53
27 25 0.44
28 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (27 bp):
TACGGAGTTCATTCCCAGTGGTAAGCA
Found at i:13970789 original size:53 final size:52
Alignment explanation
Indices: 13970689--13970790 Score: 136
Period size: 53 Copynumber: 1.9 Consensus size: 52
13970679 TGGGTTGGCT
* *
13970689 TAGGCGTACGGAGTTCATTCCATGGCTAAGCATACAGAGTTGCTTCCCAGTC
1 TAGGCATACGGAGTTCATCCCATGGCTAAGCATACAGAGTTGCTTCCCAGTC
*
13970741 TAGGCATACGGAGTTCATCCCCAGTGG-TAAGCATACGGAGTT-CATTCCCA
1 TAGGCATACGGAGTTCAT-CCCA-TGGCTAAGCATACAGAGTTGC-TTCCCA
13970791 TTAAGATCGA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
52 18 0.41
53 23 0.52
54 3 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (52 bp):
TAGGCATACGGAGTTCATCCCATGGCTAAGCATACAGAGTTGCTTCCCAGTC
Found at i:13971460 original size:158 final size:159
Alignment explanation
Indices: 13971109--13971484 Score: 449
Period size: 158 Copynumber: 2.4 Consensus size: 159
13971099 CGACTGAGCA
* * * *
13971109 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCACGCTCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
** * ** *
13971174 AGACCGAGGGTTGTGGCAGCGGGACCGATAGCACACAGAGGGGGATTGGGTCGATCTCCGGCTTG
66 AGACCGAGGGTTGTGGCAGCAAGACCGACAGCACACAGAGGGGGACCGGGCCGATCTCCGGCTTG
* *
13971239 CTCATTATGCCTCTTCGGTCGACTCAACG
131 CGCATTATGCCTCTTCGATCGACTCAACG
* * * *
13971268 CCTGCACGCTCGTTTCATGGGTT-GACTTATGCATACGGAGTTCATTGC-TAGTCTAAG-ATCAG
1 CCCGCACGCTCGTTTCATGGGTTGGA-TTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG
* * * *
13971330 ACCGGACTGAGGGTTGCT-GTAGCAAGATCGACAGCACACAG-GGGGGACCGGGCCGATCTCCGG
64 -CCAGACCGAGGGTTG-TGGCAGCAAGACCGACAGCACACAGAGGGGGACCGGGCCGATCTCCGG
* *
13971393 CTTGCGCATTCTGCCTCTTCGATCGGCT-AAGCG
127 CTTGCGCATTATGCCTCTTCGATCGACTCAA-CG
* *
13971426 CCCGCACGCTCATTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13971485 TGCGGAGTTC
Statistics
Matches: 182, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
157 2 0.01
158 97 0.53
159 82 0.45
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
AGACCGAGGGTTGTGGCAGCAAGACCGACAGCACACAGAGGGGGACCGGGCCGATCTCCGGCTTG
CGCATTATGCCTCTTCGATCGACTCAACG
Found at i:13971492 original size:26 final size:26
Alignment explanation
Indices: 13971456--13971508 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13971446 GTTGGATTAG
13971456 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
13971482 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13971508 G
1 G
13971509 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13972207 original size:26 final size:26
Alignment explanation
Indices: 13972171--13972223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13972161 TTCGTGGGAG
*
13972171 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
13972197 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
13972223 G
1 G
13972224 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:13972676 original size:158 final size:157
Alignment explanation
Indices: 13972286--13973015 Score: 578
Period size: 159 Copynumber: 4.6 Consensus size: 157
13972276 TCGGGTCCAT
* * * * * *
13972286 CCCGGCTTGCGCATTCTGCCTATCC-AGTCGGCTGAGCGCCCGCATGCCCGTTTCTTGGGTTGCC
1 CCCGACTTGCGCATTATGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGC
* * * * *
13972350 TTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAGTCGGACCGAGGGTTATGGCAGCGAGAAC
65 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAAC
* *
13972415 GGTAGCACA-CAGAGGGGGACCGGGTCGATC
130 GATAGCA-ATC-GA-GGGGACCGAGTCGATC
* * * * ** *
13972445 CCCGACTTGTGCATTATGCCTCTCTG-GCTGGCTCGA-CGCCCGCACTCTGGTTTCATGGGTTGG
1 CCCGACTTGCGCATTATGCCTCTCCGATC-GGCT-GAGCGCCCGCACGCCCGTTTCGTGGGTTGG
* * *
13972508 CTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAGCCGGACCGAGGGTTGTGGCAGTGGGAT
64 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAA
13972573 CGATAGCAGATCGAGGGGACCGAG-CTGATC
129 CGATAGCA-ATCGAGGGGACCGAGTC-GATC
* * * * * *
13972603 CCTGATTTGCACATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCT
1 CCCGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
* * * *
13972668 TAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTGGGACCG
66 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAACG
* *
13972733 ACAGC-ATGCGCAGAGGGACCAAGTCGATC
131 ATAGCAAT-CG-AG-GGGACCGAGTCGATC
* ** * * * * * * * *
13972762 CCCGGCTCACCCATTATGCCTCTTCGGTCGGCTCAGTGCTCGCACGCTCGTTTCGTGGGTTGACT
1 CCCGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
* * * *** * * * ** *
13972827 TATGTATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACTGGACTGAGGGTTGCGGCAGCAGGAT
66 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGAA
* * * *
13972890 CGACAGC-ATGCAGGGGGGACCGGGCCGATC
129 CGATAGCAAT-C-GAGGGGACCGAGTCGATC
* * * * ** * * * * * *
13972920 CCCGACTTGTGTATTTTGCCTCTCTGGCCGGCTGAGCACCCGGACGCTCGTTTCATAGGTTAGCT
1 CCCGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
* *
13972985 TAGGCATATGGAGTTCATTCCACGTCTAAGC
66 TAGGCATAGGGAGTTCATTCCATGTCTAAGC
13973016 ATACGGAGTT
Statistics
Matches: 456, Mismatches: 99, Indels: 32
0.78 0.17 0.05
Matches are distributed among these distances:
156 2 0.00
157 8 0.02
158 209 0.46
159 229 0.50
160 8 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
CCCGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAACG
ATAGCAATCGAGGGGACCGAGTCGATC
Found at i:13972910 original size:317 final size:314
Alignment explanation
Indices: 13972198--13973015 Score: 762
Period size: 317 Copynumber: 2.6 Consensus size: 314
13972188 CCAGTCTAAG
* * * * *
13972198 CATACGGAGTTCATTCCCAGCCTAAGATCGGA-TCGGACCGAGGGTTGCGACAATAGGACCGACA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * *
13972262 GC-TCGCAAGGGGGATCGGGTCCATCCCGGCTTGCGCATTCTGCCTATCC-AGTCGGCTGAGCGC
65 GCAT-GCAGGGGGGACCGGCT-GATCCCGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGC
* * * * * *
13972325 CCGCATGCCCGTTTCTTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAGTCG
127 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
** ** ***
13972390 GACCGAGGGTTATGGCAGCGAGAACGGTAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTGT
192 GACCGAGGGTTATGGCAGCGAGAACGACAGCACACAGA-GGGGACCAAGTCGATCCCCGACTCAC
* * * *
13972455 GCATTATGCCTCTCTGGCTGGCTCGACGCCCGCACTCTGGTTTCATGGGTTGGCTTAGT
256 CCATTATGCCTCTCTGGCTGGCTCGACGCCCGCACGCTCGTTTCATGGGTTGACTTAGT
* * * *
13972514 CATAGGGAGTTCATT-CCATGTCTAAGCCA-CAG-CCGGACCGAGGGTTGTGGCAGTGGGATCGA
1 CATACGGAGTTCATTCCCA-GTCTAAG--ATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGA
* * * * *
13972576 TAGCA-G-ATCGAGGGGACCGAGCTGATCCCTGATTTGCACATTCTGCCTCTCCGATCGGTTGAG
63 CAGCATGCA--GGGGGGACCG-GCTGATCCC-GACTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * *
13972639 TGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAG
124 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * * *
13972704 CCAGACCGAGGGTTGTGGTAGTGGGACCGACAGCATGCGCAGA-GGGACCAAGTCGATCCCCGGC
189 CCAGACCGAGGGTTATGGCAGCGAGAACGACAGCA--CACAGAGGGGACCAAGTCGATCCCCGAC
* * *
13972768 TCACCCATTATGCCTCT-TCGG-TCGGCTC-AGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAT
252 TCACCCATTATGCCTCTCT-GGCT-GGCTCGA-CGCCCGCACGCTCGTTTCATGGGTTGACTTA-
13972830 GT
313 GT
* * *
13972832 -ATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACAG
* * * * * ** *
13972896 CATGCAGGGGGGACCGGGCCGATCCCCGACTTGTGTATTTTGCCTCTCTGGCCGGCTGAGCACCC
66 CATGCAGGGGGGACC-GGCTGAT-CCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
* * * * * *
13972961 GGACGCTCGTTTCATAGGTTAGCTTAGGCATATGGAGTTCATTCCACGTCTAAGC
129 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13973016 ATACGGAGTT
Statistics
Matches: 401, Mismatches: 78, Indels: 45
0.77 0.15 0.09
Matches are distributed among these distances:
314 1 0.00
315 5 0.01
316 63 0.16
317 314 0.78
318 12 0.03
319 6 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (314 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACAG
CATGCAGGGGGGACCGGCTGATCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGC
ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
GAGGGTTATGGCAGCGAGAACGACAGCACACAGAGGGGACCAAGTCGATCCCCGACTCACCCATT
ATGCCTCTCTGGCTGGCTCGACGCCCGCACGCTCGTTTCATGGGTTGACTTAGT
Found at i:13973018 original size:26 final size:26
Alignment explanation
Indices: 13972988--13973040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13972978 GTTAGCTTAG
*
13972988 GCATATGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
13973014 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
13973040 G
1 G
13973041 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:13973728 original size:26 final size:26
Alignment explanation
Indices: 13973698--13973750 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13973688 GTTGACTTAG
*
13973698 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
*
13973724 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
13973750 G
1 G
13973751 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:13974235 original size:26 final size:25
Alignment explanation
Indices: 13974199--13974293 Score: 93
Period size: 26 Copynumber: 3.7 Consensus size: 25
13974189 GTTGGCTTAG
*
13974199 GCATACGGAGTTCATTCCATGGCTAA
1 GCATACAGAGTTCATTCCA-GGCTAA
*
13974225 GCATACAGAGTTCATTCTCAGTG-TAG
1 GCATACAGAGTTCATTC-CAG-GCTAA
* * *
13974251 GAATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCAT-TCCAGGCTAA
*
13974277 GCATACGGAGTTCATTC
1 GCATACAGAGTTCATTC
13974294 GAAATCTTAG
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.02
26 51 0.91
27 4 0.07
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGGCTAA
Found at i:13976015 original size:184 final size:189
Alignment explanation
Indices: 13975792--13976173 Score: 458
Period size: 196 Copynumber: 2.0 Consensus size: 189
13975782 GTTGAGTTAG
* * *
13975792 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGA-GG-GTTAC-G-AT-AGCAGGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCAATGGTGCTACAGCATCAGCAGGAT
* * * *
13975852 CGATAGCACGTAGG-GGGGACC-GGACCGGTCC-CAGGCTTAC-GCATTATGCCTCTCCAACCGG
66 CGACAGCACGTAGGAAGGG-CCAGG-CCGATCCTCA-GCTT-CTGCATTATGCCTCTCCAACCGA
*
13975913 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
127 CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
*
13975976 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAATCAATGGTTGCTACAGCATGACCAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCAATGG-TGCTACAGCAT------CA
* * * * *
13976041 GCAGGATCGACAGCACGTAGGAAGGGCCAGGCTGATCCTCAGCTTCTGCATTCTGCCTTTCCGAT
59 GCAGGATCGACAGCACGTAGGAAGGGCCAGGCCGATCCTCAGCTTCTGCATTATGCCTCTCCAAC
* *
13976106 CGACTGAGCATCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
124 CGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
13976171 A
189 A
13976172 GC
1 GC
13976174 CCCAACAGGA
Statistics
Matches: 166, Mismatches: 16, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
184 39 0.23
185 2 0.01
187 4 0.02
188 1 0.01
189 2 0.01
195 1 0.01
196 110 0.66
197 7 0.04
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (189 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCAATGGTGCTACAGCATCAGCAGGAT
CGACAGCACGTAGGAAGGGCCAGGCCGATCCTCAGCTTCTGCATTATGCCTCTCCAACCGACTGA
GCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
Found at i:13976793 original size:159 final size:157
Alignment explanation
Indices: 13976343--13976843 Score: 490
Period size: 159 Copynumber: 3.2 Consensus size: 157
13976333 CCCAGTCTGA
* * ** * *
13976343 GCATAT-GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGGCA
1 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
13976407 GCACGCA-AGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
65 GCACGCAGA-GGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCTGGCTGAGCGC
* * *
13976471 CCGCACGCCCGTTTTGTAGGTTGGA-TTAG
129 CCGCACGCTCGTTTCGTGGGTT-GACTTAG
* * ** * * * *
13976500 GCATAGGGAGTTCATTCCATGTTTAAGCCCTAG-CCAGATCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATATGGAGTTCATTCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
13976564 AACACGCAGAGGGGCATCGGGCCGATCCCCGGCTTGTGCATTATGCCTTTTC-GATCGGCTCAAC
64 AGCACGCAGAGGGG-ATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCT-GGCTGAGC
* * * *
13976628 GTCCGCACACTCGTTTCATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
13976659 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGACA
1 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
** * * ** *
13976724 GCATACAGGAGGGGACCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCTGATTGAGCAC
65 GCACGCA-GAGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCTGGCTGAGCGC
* *
13976789 CCGCACGCTCGTTTCGTGGGTTGGCCTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
13976818 GCATACGGAGTTCATTCTAGTCTAAG
1 GCATATGGAGTTCATTCCAGTCTAAG
13976844 CATACAGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 8 0.03
158 63 0.23
159 188 0.70
160 11 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGAGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:13976853 original size:25 final size:26
Alignment explanation
Indices: 13976818--13976869 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13976808 GTTGGCCTAG
* *
13976818 GCATACGGAGTTCATT-CTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13976843 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13976869 G
1 G
13976870 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13977586 original size:26 final size:26
Alignment explanation
Indices: 13977550--13977602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13977540 GTTGACTTAG
13977550 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
13977576 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
13977602 G
1 G
13977603 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:13978953 original size:26 final size:26
Alignment explanation
Indices: 13978917--13978969 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13978907 GTTGGCTTAG
13978917 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
13978943 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13978969 G
1 G
13978970 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13985230 original size:26 final size:26
Alignment explanation
Indices: 13985194--13985244 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
13985184 TGGCTTAGGT
*
13985194 ATACGGAGTTCATTC-CATGTCTAAGC
1 ATACGAAGTTCATTCTCA-GTCTAAGC
13985220 ATACGAAGTTCATTCTCAGTCTAAG
1 ATACGAAGTTCATTCTCAGTCTAAG
13985245 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCTCAGTCTAAGC
Found at i:13985705 original size:157 final size:152
Alignment explanation
Indices: 13985218--13985707 Score: 462
Period size: 157 Copynumber: 3.1 Consensus size: 152
13985208 CCATGTCTAA
* *
13985218 GCATACGAAGTTCATTCTCAGTCTAAGATCAGACTGGACCGAGGGTT-CTGGCAGCAGGAAT-GA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCA-AC-CGACCGAGGGTTGC-GGCAGCAGG-ATCGA
* * * * **
13985281 CAGCACGCAGGGAGGATCGGGCCAATTCCCAGCTTGCGTATTCTACCTCTTTGGTCGGCTAAGCG
61 CAGCACGCAGGGGGGACCGGGCCGA-TCCCAGCTTGCG-ATTCTGCCTCTCCGGTCGGCTAAGCG
* * *
13985346 CCCGCACGCCCGTTTCCTGGGTTGGCTTAG
124 CCTGCACGCTCG-TTCATGGGTTGGCTTAG
* ** * * * ** *
13985376 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGTAGTGGGACCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAACCG-ACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
13985441 GCACGCAGAGGGGGACCGGGCTGACCCCGGCTTGCGATTATGCCTCTCCGATCGGCTCAGCGCCT
63 GCACGCAG-GGGGGACCGGGCCGATCCCAGCTTGCGATTCTGCCTCTCCGGTCGGCTAAGCGCCT
*
13985506 GCACGCTCGTTCATGGGTTGACTTAG
127 GCACGCTCGTTCATGGGTTGGCTTAG
*
13985532 GCATACAGAGTTCATTCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
1 GCATACGGAGTTCATTCCAGTCTAAGATC-AACC-GACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * * *
13985597 TAAGCAGGGGGGACCCGACCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACAT
64 CACGCAGGGGGGACCGGGCCGATCCCAG-CTTGCG-ATTCTGCCTCTCCGGTCGGCTAAGCGCCT
* *
13985662 GCACGTTCGATTCGTGGGTTGGCTTAG
127 GCACGCTCG-TTCATGGGTTGGCTTAG
13985689 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
13985708 TGTTTAAGCA
Statistics
Matches: 267, Mismatches: 54, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
154 17 0.06
155 45 0.17
156 64 0.24
157 67 0.25
158 61 0.23
159 13 0.05
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (152 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAACCGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
CGCAGGGGGGACCGGGCCGATCCCAGCTTGCGATTCTGCCTCTCCGGTCGGCTAAGCGCCTGCAC
GCTCGTTCATGGGTTGGCTTAG
Found at i:13985741 original size:26 final size:26
Alignment explanation
Indices: 13985689--13985741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13985679 GTTGGCTTAG
*
13985689 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
13985715 GCATACGGAGTTCATTTCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
13985741 G
1 G
13985742 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:13986103 original size:26 final size:26
Alignment explanation
Indices: 13986066--13986118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13986056 GTTGACTTAG
*
13986066 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
13986092 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13986118 G
1 G
13986119 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13986834 original size:27 final size:27
Alignment explanation
Indices: 13986804--13986858 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
13986794 GGGTTGGCTT
*
13986804 AAGCATAGGGAGTTCATT-CCATGTCTA
1 AAGCATACGGAGTTCATTCCCA-GTCTA
13986831 AAGCATACGGAGTTCATTCCCAGTCTA
1 AAGCATACGGAGTTCATTCCCAGTCTA
13986858 A
1 A
13986859 GATCAGACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (27 bp):
AAGCATACGGAGTTCATTCCCAGTCTA
Found at i:13986984 original size:185 final size:182
Alignment explanation
Indices: 13986656--13987016 Score: 422
Period size: 185 Copynumber: 2.0 Consensus size: 182
13986646 TAGGCATCCA
*
13986656 GAGTTCATTCCCAGTCTAAGATCGGATCGACCCAAGAGTTGCAGTAACAGGATCAACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGACCCAAGAGTTGCAGT-A-AGGATCAACAGCACGCA
* * * * **
13986721 GTGGGGACCGGGCTGATCCCCAGCTTACGAATTCTGCCTCTCTGGCTGGTTGAGCGCCAGCACGT
64 GGGGGGACCGGGCTGATCCCCAGCTTACGAATTCTGCCTCTCTGGCCGGCTAAGCGCCAGCACAC
* *
13986786 TCGTTCGTGGGTTGGCTTAAG-CATAGGGAGTTCATTCCATGTCTAAAGCATACG
129 TCGTTCATGGGTTGGCTTAAGTC-TACGGAGTTCATTCCATGTCTAAAGCATACG
* * * *
13986840 GAGTTCATTCCCAGTCTAAGATCAGACTGGATCCGAAGATTGTGACAGT-AGGATCGACAGCACG
1 GAGTTCATTCCCAGTCTAAGATCAGA-TCGA-CCCAAGAGT-TG-CAGTAAGGATCAACAGCACG
** * * * * * *
13986904 TGGGGGGGATCGGGCTGATCCTCGGCTTACGCATTCTG-CTCTCTGGCCGGCTAAGCGCCCGCAT
62 CAGGGGGGACCGGGCTGATCCCCAGCTTACGAATTCTGCCTCTCTGGCCGGCTAAGCGCCAGCAC
* *
13986968 ACTCATTTCATGGGTTGGCTTAGGTCTACGGAGTTCATTCCATGTCTAA
127 ACTC-GTTCATGGGTTGGCTTAAGTCTACGGAGTTCATTCCATGTCTAA
13987017 GCCCAGCTAG
Statistics
Matches: 148, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
184 48 0.32
185 86 0.58
186 8 0.05
187 2 0.01
188 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (182 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGACCCAAGAGTTGCAGTAAGGATCAACAGCACGCAGG
GGGGACCGGGCTGATCCCCAGCTTACGAATTCTGCCTCTCTGGCCGGCTAAGCGCCAGCACACTC
GTTCATGGGTTGGCTTAAGTCTACGGAGTTCATTCCATGTCTAAAGCATACG
Found at i:13987668 original size:158 final size:156
Alignment explanation
Indices: 13987206--13987703 Score: 470
Period size: 160 Copynumber: 3.1 Consensus size: 156
13987196 CTAAGCGTAT
* * *
13987206 GGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGAACGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGG-CCTAGGGTTGCGACAGTAGGAACGACAGCACG
* * * * * * *
13987270 CAGGGGGGA-CTGGGCCGATCCTCCGGCTTGCACATTCTACCTCTCCGAT-CAGCTGAGCACCCG
64 CAAGAGGGATC-GGGCCAAT-C-CCGGCTTGCGCATTCTACCTCTCTG-TCCGGCTGAGCACCTG
*
13987333 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
125 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * * * * ** *
13987365 GGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTTTG-CAGTGGGACCGGTAGAA
1 GGAGTTCATTCCATGTCTAAG-ATCAGACCGGCCT-AGGGTTG--CGACAGTAGGAACGACAGCA
* * * * * * * *
13987428 CGCAAAAGAGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCTCT-TCGACCGACTCAGCGCTT
62 CGCAAGAG-GGATCGGGCCAATCCC-GGCTTGCGCATTCTACCTCTCT-GTCCGGCTGAGCACCT
* * *
13987492 GCACGCTCGTTTCGTGGGTTGACTTATGCGTAC
124 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
13987525 AGAGTTCATTCC-TAGTCTAAGATCAGACCGGTCCTAGGGTTGCGACAGTAGGATCGACAGCACG
1 GGAGTTCATTCCAT-GTCTAAGATCAGACCGG-CCTAGGGTTGCGACAGTAGGAACGACAGCACG
* *
13987589 CAAGAGGGATCGAGCCAATCCGCGGCTTGCGTATTCTACCTCTCTGTCCGGCTGAGCACCTGCAC
64 CAAGAGGGATCGGGCCAATCC-CGGCTTGCGCATTCTACCTCTCTGTCCGGCTGAGCACCTGCAC
* *
13987654 GCTCGTTTCATGGGTTGGCTTAGGTATAC
128 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
13987683 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
13987704 CATACGGAGT
Statistics
Matches: 265, Mismatches: 57, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
158 93 0.35
159 55 0.21
160 103 0.39
161 13 0.05
162 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGCCTAGGGTTGCGACAGTAGGAACGACAGCACGCA
AGAGGGATCGGGCCAATCCCGGCTTGCGCATTCTACCTCTCTGTCCGGCTGAGCACCTGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:13987709 original size:26 final size:26
Alignment explanation
Indices: 13987679--13987729 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13987669 TGGCTTAGGT
13987679 ATACGGAGTTCATTC-CATGTCTAAGC
1 ATACGGAGTTCATTCTCA-GTCTAAGC
13987705 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCTCAGTCTAAG
13987730 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCTCAGTCTAAGC
Found at i:13987855 original size:185 final size:184
Alignment explanation
Indices: 13987526--13987889 Score: 475
Period size: 185 Copynumber: 2.0 Consensus size: 184
13987516 TATGCGTACA
* * * * *
13987526 GAGTTCATTCCTAGTCTAAGATCAGACCGGTCCTAGGGTTGCGACAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTCCGACAGCAGGAACGACAGCACGCA
* * * * *
13987591 AGAGGGATCGAGCCAATCCGCGGCTTGCGTATTCTACCTCTCTGTCCGGCTGAGCACCTGCACGC
66 AGAGGGACCGAGCCAATCCGCAGCTTGCGTATTCTACCTCTCTGGCCGACTGAGCACCCGCACGC
* * *
13987656 TCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACG
131 CCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* *
13987710 GAGTTCATT-CTCAGTCTAAGATTAGACCGGACCGAGGGTTTCCTG-TAGCAGGAACGACAGCAC
1 GAGTTCATTCCT-AGTCTAAGATCAGACCGGACCGAGGG-TTCC-GACAGCAGGAACGACAGCAC
* * *
13987773 GC-AGGGAGGACCGGGCCAATTCC-CAGCTTGCGTATTCTACCTCTCTGGCCGACTGAGCGCCCG
63 GCAAGAG-GGACCGAGCCAA-TCCGCAGCTTGCGTATTCTACCTCTCTGGCCGACTGAGCACCCG
* *
13987836 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
126 CACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
13987890 CCTAGCCGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
183 2 0.01
184 35 0.23
185 114 0.74
186 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTCCGACAGCAGGAACGACAGCACGCA
AGAGGGACCGAGCCAATCCGCAGCTTGCGTATTCTACCTCTCTGGCCGACTGAGCACCCGCACGC
CCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
Found at i:13988141 original size:157 final size:158
Alignment explanation
Indices: 13987703--13988203 Score: 528
Period size: 157 Copynumber: 3.2 Consensus size: 158
13987693 CCATGTCTAA
* * * *
13987703 GCATACGGAGTTCATTCTCA-GTCTAAGATTAGACCGGACCGAGGGTTTCCTGTAGCAGGAACGA
1 GCATACGGAGTTCATTC-CATGTCTAAGATTAGACCGGACCGAGGG-TTACGGCAGTAGGAACGA
* * * * *
13987767 CAGCACGCAGGGAGGACCGGGCCAATTCCCAGCTTGCGTATTCTACCTCTCTGGCCGACTGAGCG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTGCCTCTCTGGCCGGCTGAGCG
* * * *
13987832 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
13987862 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACTGAGGGTTATGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTAGACCGGACCGAGGGTTACGGCAGTAGGAACGAC
* * * * * * * *
13987926 AGCACACAGAGGGGGACCGGGCTGATCCCCAGCTTGC-CATTATGCCTCTTTGGTCGGCTCAGTG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTGCCTCTCTGGCCGGCTGAGCG
* *
13987990 CCTGCACGCTCGTTTAATGGGTTGACTTAG
129 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
13988020 GCATACAGAGTTCATTCCA-GTCTAAGATTGGACCGGACCCAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGTAGGAACGACA
* * * * *
13988084 GTACGTAGGGGGGACCCGACCGATCCCC-GACTTGCGTATTCTGCCTCTCCT-GCCGGCTGAGCA
66 GCACGCAGGGGGGACCGGGCCGATCCCCAG-CTTGCGTATTCTGCCTCT-CTGGCCGGCTGAGCG
* *
13988147 CATGCACGCTCGATTCATGGGTTGGCTTAG
129 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
13988177 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
13988204 CATACGGAGT
Statistics
Matches: 275, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
155 1 0.00
156 24 0.09
157 100 0.36
158 90 0.33
159 57 0.21
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGTAGGAACGACA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTGCCTCTCTGGCCGGCTGAGCGCC
TGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:13988207 original size:26 final size:26
Alignment explanation
Indices: 13988177--13988229 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
13988167 GTTGGCTTAG
13988177 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
13988203 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
13988229 G
1 G
13988230 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:13988210 original size:500 final size:505
Alignment explanation
Indices: 13987121--13988249 Score: 1467
Period size: 503 Copynumber: 2.3 Consensus size: 505
13987111 CCTCTTCAGC
* * * * *
13987121 CTGCCTCTCC-GACCGACTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAG
1 CTGCCTCTCCTGACCGGCTGAGCACCTGCACGCTCGA-TTCATGGGTTGGCTTAGGCATACGGAG
* * * * *
13987184 TTCATCCCCA-GTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG-TT
65 TTCAT-TCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTT
* * * * *
13987247 GCGACAGCAGGAACGACAGCACGCAGGGGGGACTGGGCCGATCCTCCGGCTTGCACATTCTACCT
129 CCGACAGCAGGAACGACAGCACGCAGGGAGGACCGGGCCAATCCTCCAGCTTGCACATTCTACCT
* * *
13987312 CTCCGATCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
194 CTCCGACCAGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
* * ** * *
13987377 ATGTCTAAGCCCCAACCGGACTGAGGGTTGTTTGCAGTGGGACCGGTAGAACGCAAAAGAGGATC
259 ATGTCTAAGCCCCAACCGGACTGAGGGTTGATGGCAGTGGGACCGACAGAACACAAAAGAGGACC
** * **
13987442 GGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCTTGCACGCTCGTTTCGT
324 GGGCCAATCCCCAGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCTGCACGCTCGTTTAAT
* * * *
13987507 GGGTTGACTTATGCGTACAGAGTTCATTCCTAGTCTAAGATCAGACCGGTCCTAGGGTTGCGACA
389 GGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCCAGGGTTGCGACA
* * *
13987572 GTAGGATCGACAGCACGCAAGAGGGATCGAGCCAATCCGCGGCTTGCGTATT
454 GTAGGATCGACAGCACGCAAGAGGGACCGAGCCAATCCCCGACTTGCGTATT
* * * *
13987624 CTACCTCT-CTGTCCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGT
1 CTGCCTCTCCTGACCGGCTGAGCACCTGCACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGT
*
13987688 TCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATTAGACCGGACCGAGGGTTTCC
66 TCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTTCC
* * **
13987753 TG-TAGCAGGAACGACAGCACGCAGGGAGGACCGGGCCAATTC-CCAGCTTGCGTATTCTACCTC
131 -GACAGCAGGAACGACAGCACGCAGGGAGGACCGGGCCAATCCTCCAGCTTGCACATTCTACCTC
* * *
13987816 TCTGGCC-GACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
195 TCCGACCAG-CTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
* * * * * *
13987880 ATGTCTAAGCCCTAGCCGGACTGAGGGTT-ATGGCAGTGGGACCGACAGCACACAGAGGGGGACC
259 ATGTCTAAGCCCCAACCGGACTGAGGGTTGATGGCAGTGGGACCGACAGAACACAAAAGAGGACC
** * ** * *
13987944 GGGCTGATCCCCAGCTTGC-CATTATGCCTCTTTGGTCGGCTCAGTGCCTGCACGCTCGTTTAAT
324 GGGCCAATCCCCAGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCTGCACGCTCGTTTAAT
** *
13988008 GGGTTGACTTAGGCATACAGAGTTCATTCC-AGTCTAAGATTGGACCGGACCCAGGGTTGCGGCA
389 GGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCCAGGGTTGCGACA
* * * * *
13988072 GTAGGATCGACAGTACGTAGGGGGGACCCGA-CCGATCCCCGACTTGCGTATT
454 GTAGGATCGACAGCACGCAAGAGGGA-CCGAGCCAATCCCCGACTTGCGTATT
*
13988124 CTGCCTCTCCTG-CCGGCTGAGCACATGCACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGT
1 CTGCCTCTCCTGACCGGCTGAGCACCTGCACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGT
*
13988188 TCATTCCATGTCTAAGCATACGGAGTTCATT-TCCAGTCTAAGATCAGACCGAACCGAGGGTT
66 TCATTCCATGTCTAAGCATACGGAGTTCATTCT-CAGTCTAAGATCAGACCGGACCGAGGGTT
13988250 ACGGCAGTAA
Statistics
Matches: 542, Mismatches: 75, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
499 1 0.00
500 183 0.34
501 71 0.13
502 45 0.08
503 203 0.37
504 38 0.07
505 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (505 bp):
CTGCCTCTCCTGACCGGCTGAGCACCTGCACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTTCC
GACAGCAGGAACGACAGCACGCAGGGAGGACCGGGCCAATCCTCCAGCTTGCACATTCTACCTCT
CCGACCAGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
GTCTAAGCCCCAACCGGACTGAGGGTTGATGGCAGTGGGACCGACAGAACACAAAAGAGGACCGG
GCCAATCCCCAGCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCCTGCACGCTCGTTTAATGG
GTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCCAGGGTTGCGACAGT
AGGATCGACAGCACGCAAGAGGGACCGAGCCAATCCCCGACTTGCGTATT
Found at i:13988588 original size:26 final size:26
Alignment explanation
Indices: 13988558--13988610 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13988548 TTGACTTTAG
13988558 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
13988584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
13988610 G
1 G
13988611 ATCAAGACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:13988928 original size:160 final size:159
Alignment explanation
Indices: 13988584--13988928 Score: 367
Period size: 160 Copynumber: 2.2 Consensus size: 159
13988574 CCCAGTCTAA
* * * * * *
13988584 GCATACGGAGTTCATTCCCAGTCTAAGATCAAGACCAGA-TCGAGGG--T-TACGGAGTAAGATC
1 GCATACAGAGTTCATTCCCAGTCTAAGATC-ATATCAGACT-GAGGGTTTGTA-GCAGCAGGATC
* * * *
13988645 GACAGCACGTAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTCAG
63 GACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAG
** * * * *
13988710 CACCTGCAAGCTTGTTTTGTGGGTTGATTTAT
128 CACCTGCAAGCTCATTTCGTGGCTTGACTTAG
* *
13988742 GCATATAGAGTTCATTCCCAGTCTAAGATCATATCAGACTGAGGGTTTGTAGCAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCATATCAGACTGAGGGTTTGTAGCAGCAGGATCGAC
* * * * *
13988807 AGCATGCAGGGTGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCCTCTCCGACCGACTGAGCG
66 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTG-CCTCTCCGACCGACTCAGCA
* * *
13988872 CCTGTACGCTCATTTCGTGGCTTGGCTTAG
130 CCTGCAAGCTCATTTCGTGGCTTGACTTAG
*
13988902 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
13988929 CATATGGAGT
Statistics
Matches: 153, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 11 0.07
158 29 0.19
159 52 0.34
160 61 0.40
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCATATCAGACTGAGGGTTTGTAGCAGCAGGATCGAC
AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCAC
CTGCAAGCTCATTTCGTGGCTTGACTTAG
Found at i:13989529 original size:26 final size:26
Alignment explanation
Indices: 13989492--13989544 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13989482 TTTGACTTAG
13989492 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
13989518 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
13989544 G
1 G
13989545 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:13990070 original size:25 final size:26
Alignment explanation
Indices: 13990037--13990086 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
13990027 GACTTATGCA
13990037 ATACAGAGTTCATT-CCAATCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
* *
13990062 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
13990087 ATCGAACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:13990614 original size:158 final size:156
Alignment explanation
Indices: 13990317--13990892 Score: 439
Period size: 158 Copynumber: 3.6 Consensus size: 156
13990307 GATCGGGTTA
* * * * * * * * * * *
13990317 ATCCCCAGCTTGCGTATTATGCCTCTCTGACCGGTTGAGCGCTCGTACGCTCATTACATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGATTG
* * * * * ** **
13990382 ACTTAGGCATACGGAGTTTATTCC-TAGTCTCAG-ATCACGTCAG-ATTGAGGGTTGCAATAGCA
66 -CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCA-GACCGAACCGAGGGTTGCAGCAGCA
* *
13990444 GGATCGACAGCACACAGGGGGCACCGGGCCT
128 GGACCGATAGCACACAGGGGG-ACCGGG-CT
* * * * *
13990475 ATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACACCCGTTTCGTGGGTTA
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGATT-
* * * ** *
13990540 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGTTGCAGCGGG
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCAGCAGCAGG
* * *
13990604 ACC-AGTAGCACACTAAGGGGGATCGAGTCG
130 ACCGA-TAGCACAC--AGGGGGACCG-GGCT
* ** * * * *
13990634 ATCCCCGGCTTGCGCATTATGCCCTCTCCGGTCTGCTCAGCGCTCGCACGCTCGTTTCATGGATT
1 ATCCCCGGCTTGCGCATTCTG-CCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGATT
* * * * * *
13990699 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGATGGTTGCAGTAGTA
65 G-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGCAGCAGCA
* *
13990762 GGATCGATAGCACGTA-AAGGGGACCGGGCT
128 GGACCGATAGCAC--ACAGGGGGACCGGGCT
* * * *
13990792 GATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGGTGAGCGCCCGTACGCTCGTTTCGTGGTTT
1 -ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGATT
*
13990857 GGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCA
65 -GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
13990893 TACGGAGTTC
Statistics
Matches: 329, Mismatches: 70, Indels: 37
0.75 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 168 0.51
159 60 0.18
160 91 0.28
161 4 0.01
162 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (156 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGATTG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCAGCAGCAGGA
CCGATAGCACACAGGGGGACCGGGCT
Found at i:13990835 original size:318 final size:321
Alignment explanation
Indices: 13990060--13990891 Score: 888
Period size: 318 Copynumber: 2.6 Consensus size: 321
13990050 TCCAATCTAA
* * * * *
13990060 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACCGAGGATTAC-GGAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGG-TTGCAGTAGCAGGATCGAC
* * * * * * *
13990123 AGCACGTAGGGGGGACTGGGCTAATGCCCGGCTT-AAGTATTCTGCCTCTCCGACCAGCTAAGCG
64 AGCACGTAAGGGGGACCGGGCT-ATCCCCGGCTTGCA-CATTCTGCCTCTCCGACCGGCTGAGCG
*
13990187 CCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGCA-TTCATTCCATGTCTAAGCCACAAC
127 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG-AGTTCATTCCATGTCTAAGCCACAAC
* * *
13990251 CGAACCGAGGGTTGTGGTAGCAGGACCGACAGTGGGATCGACAGCACACAGAAAGGGATCGGGTT
191 CGAACCGAGGGTTGTGGCAGCAGGACC-ACAGT--GA-CGACAGCACACAG-AAGGGATCGAGTC
* * *
13990316 AATCCCCAGCTTGCGTATTATGCCTCTCTGACCGGTTGAGCGCTCGTACGCTCATTACATGGGTT
251 AATCCCCAGCTTGCGCATTATGCCTCTCT-ACCGGTTGAGCGCTCGCACGCTCATTACATGGATT
13990381 GACTTAG
315 GACTTAG
* * * * * *
13990388 GCATACGGAGTTTATTCCTAGTCTCAGATCACG-TCAGATTGAGGGTTGCAATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACTGA-GGTTGCAGTAGCAGGATCGAC
* * *
13990452 AGCAC--ACAGGGGGCACCGGGCCTATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGC
64 AGCACGTA-AGGGGG-ACCGGG-CTATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGC
* * * **
13990515 GCCCGCACACCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
126 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAAC
* * * *
13990580 CGAACCGAGGGTTGTTGCAGCGGGA-C-CAGT-A-G-CA-CACTA-AG-GGGGATCGAGTCGATC
191 CGAACCGAGGGTTGTGGCAGCAGGACCACAGTGACGACAGCAC-ACAGAAGGGATCGAGTCAATC
* * *
13990637 CCCGGCTTGCGCATTATGCC-CTCT-CCGGTCTGCTCAGCGCTCGCACGCTCGTTTCATGGATTG
255 CCCAGCTTGCGCATTATGCCTCTCTACCGGT-TG---AGCGCTCGCACGCTCATTACATGGATTG
13990700 ACTTAG
316 ACTTAG
* * *
13990706 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGATGGTTGCAGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGTTGCAGTAGCAGGATCGACA
* *
13990771 GCACGTAAAGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGGTGAGCGCC
65 GCACGTAAGGGGGACCGGGCT-ATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * * *
13990836 CGTACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGC
129 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
13990892 ATACGGAGTT
Statistics
Matches: 425, Mismatches: 61, Indels: 46
0.80 0.11 0.09
Matches are distributed among these distances:
314 5 0.01
315 2 0.00
316 4 0.01
317 33 0.08
318 182 0.43
319 10 0.02
320 4 0.01
321 1 0.00
323 1 0.00
326 4 0.01
327 1 0.00
328 42 0.10
329 133 0.31
330 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (321 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGTTGCAGTAGCAGGATCGACAG
CACGTAAGGGGGACCGGGCTATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCG
CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAACCGAAC
CGAGGGTTGTGGCAGCAGGACCACAGTGACGACAGCACACAGAAGGGATCGAGTCAATCCCCAGC
TTGCGCATTATGCCTCTCTACCGGTTGAGCGCTCGCACGCTCATTACATGGATTGACTTAG
Found at i:13990893 original size:26 final size:26
Alignment explanation
Indices: 13990864--13990916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13990854 TTTGGCTTAG
13990864 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
*
13990890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
13990916 G
1 G
13990917 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:13991455 original size:25 final size:26
Alignment explanation
Indices: 13991422--13991470 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
13991412 TGACTTAGGC
13991422 CATACGGAGTTCAT-CCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
13991447 CATATGGAGTTCATCCCCAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
13991471 CGATTGAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:13992284 original size:25 final size:26
Alignment explanation
Indices: 13992256--13992307 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13992246 GTTGACTTAG
*
13992256 GCATACGAAGTTCA-TCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
13992281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13992307 G
1 G
13992308 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:13992809 original size:26 final size:26
Alignment explanation
Indices: 13992757--13992809 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13992747 GTTGGCTTAG
* *
13992757 GCATACAGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
*
13992783 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
13992809 G
1 G
13992810 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:13993387 original size:871 final size:863
Alignment explanation
Indices: 13991531--13994491 Score: 2771
Period size: 837 Copynumber: 3.4 Consensus size: 863
13991521 GGCTCGACAC
* *
13991531 CCGCACGCCCGTTTCGT-GGTTGGCTTAGGCCATAGGGAGTTCA-TCCATGTCTATGCCCCCAGT
1 CCGCACACCCGTTTCGTGGGTTGGCTTAGG-CATAGGGAGTTCATTCCATGTCTAAG-CCCCAGT
* * * * * * * *
13991594 CGGACCAAGGGTTGGGGCAGTGGGACCGGCAGCACGCAGAGGAGGACTGGGCCGATCCCCGACTC
64 CAGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCT-
* * * *
13991659 T-CGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACGCTTGTTTCGTGGCTTGACTTAGGCAT
128 TGCGCATTATGCCTCTTCGACCGGCTTAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * ** *
13991723 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAGGATCGACAACAC
193 ACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
* * * * * * **
13991788 GCAGGGGGGGACTAGG-CTAATCCTTGGCTTGTGCATTCTGCCTCTCCAG-TCGGCTGAGCGCTT
258 GCA-GGGGGGAC-AGGTC-AAT-CTCGACTTGCGCATTCTGCCTCTTCGGCT-GACTGAGCGCCC
* * * ** * *
13991851 GCACGTTCGTTTCGTGGGTTGGCTTCGGTATATGGAGTTCATTACATGTCTAAGCATATGGAGTT
318 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTT
* * ** *
13991916 CATTCCCAGTCTAAGATCAGATCGGACC-AAGGGTTGCGACAGCAGGACCAGCA-CAGGATCGAT
383 CATTCCCAGTCTAAGATCGGATCGGACCGAA-GGTTACGGTAGCAGGACCAGCAGCAGGATCGAC
* * ** *
13991979 AGCATACAGGGGGGAT-CGGGTGGATCCCTGACTTGTGCATTCTGGCTCTTCGACCGGCTGAGTG
447 AGCATGCAGGGGGG-TCCGGGTCGATCCCTGACTT-ACCATTCT-GCTCTTTGACC-GCTGAGTG
* * *
13992043 CCTGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACC
508 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC
* ** *
13992108 GGACCGAGGGTTGTGGCAGTAGAACCGACAGCAGGATCGGTA-ACATGCAGAGGGGGATCGGGCT
573 GGACC--GGGCTGTGG-AG--G-ACCGACAGTGGGATCGATAGACAT-CAGAGGGGGATCGGGCT
* * * * *
13992172 GATCCTC-GGCTTCGCATTATGCCTCTCTGACTGGCCTCTCCGATCGGCTGAGTGCCCGCATGCT
631 GATCC-CAGCCTACGCATTATGCCTCTC--ACCGGCCTCT-CG-TCGGCTGAGCGCCCGCAAGCT
** *
13992236 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTAG-TCTAAGCATACGGAGTTCATTCCC
691 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCGATCTAAGCATACAGAGTTCATTCCC
* * * * * *
13992300 AGTCTAAGATCAAACTAGACTGAAGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGG
756 AGTTTAAGATCGACCGAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATC-GG
* ** *
13992365 CCGATCCCCATCTTACATATTCTGCCTCT-TCGACCGGATGAGCG
820 CCAATCCCCGGCTTATATATTCTGCCTCTCT-GACCGGATGAGCG
* ** * *
13992409 CCCGCATACCCGTTTTTATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 -CCGCACACCCG-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * * *
13992474 CAGACCGAGGGTTGTGGTAGCGAGACCAACAGCACGTAGAGGGGGACCGGGTCAATCCCTGGCTT
64 CAGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTT
* ** * ** * *
13992539 GTGCATTATAACTCTCCGACCGGCTTAGCT-CTTGGACGCTCATTTCGTGGGTTGACTTAGGCAT
129 GCGCATTATGCCTCTTCGACCGGCTTAG-TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
13992603 ACGAAGTTCATTCCAAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCAC
193 ACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
* * *
13992668 GTAGGGGGGACAAGGTCAATTCTCGACTTGCACATTCTGCCTCTTCGGCTGACTGAGCACCCGCA
258 GCAGGGGGGAC-AGGTCAA-TCTCGACTTGCGCATTCTGCCTCTTCGGCTGACTGAGCGCCCGCA
* * *
13992733 CGCTCTTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAAGCATACGGAGTTCAT
321 CGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * * * * * *
13992798 TCCCAGTATAAGATTGGACCGGGCCGAAGGTTACGGTAACGGGACCAGCAGTAGGATCGACAGCA
386 TCCCAGTCTAAGATCGGATCGGACCGAAGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCA
* * * *
13992863 TGCAGGGGGGTCCGAGTTGATCCCTGGCTTACCAATTCTGCTTCTTT-AGCCAGCTAAGTGCCCG
451 TGCAGGGGGGTCCGGGTCGATCCCTGACTTACC-ATTCTGC-TCTTTGA-CC-GCTGAGTGCCCG
* ** * * * * * *
13992927 CACACTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTGCATGTCTAAGTCCCAGTCGGAT
512 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * *
13992992 C-GG-T-AGGAGGACCGACAGTGGGATCAATAGTACAT-AGA-GGGGATCGAGCTGATCCCAAGC
577 CGGGCTGTGGAGGACCGACAGTGGGATCGATAG-ACATCAGAGGGGGATCGGGCTGATCCC-AGC
* * * * *
13993052 CTGCGCATTATGCCTCTTCAACCGGCCTCTCTGGTCGGCTCAACGCCCGCAAGCTCATTTCATGG
640 CTACGCATTATGCCTC-TC-ACCGGCCTCTC--GTCGGCTGAGCGCCCGCAAGCTCGTTTCGTGG
* * * * *
13993117 GTTGATTTAGGCATACGGAGTTCGTCCCCGATCTAAGCATACAGAGTGCATTCCCAATTTAAGAT
701 GTTGACTTAGGCATACGAAGTTCATCCCCGATCTAAGCATACAGAGTTCATTCCCAGTTTAAGAT
* * * * *
13993182 CGGACCGAAAC-GAGGGTGGCGACAGTAGGATCGGTAGCACACAGGGGGGATCAGGCCAATCCCC
766 C-GACCGAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATC-GGCCAATCCCC
* * * * * *
13993246 GGCTTATGTATTCTGGCTCTCTGGCTGGTTGAGTG
829 GGCTTATATATTCTGCCTCTCTGACCGGATGAGCG
** *
13993281 CCAGCACGTCCGTTTCGTGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CC-GCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * ** *
13993346 GGATCGAGGGTTGTGGCAGTGGGACCGGTAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTG
65 AGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTG
* * * * *
13993411 CGCATTATGCCTCTTCAACCGG-TTCAGTGCCTGCAGGCTCGTTTCGTGGGTTGACTTATGCATT
130 CGCATTATGCCTCTTCGACCGGCTT-AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
13993475 CAAAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTAAGGCAGCAAGATCGACAGCAC
194 CGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCAC
* * **
13993539 GTA---GGG---GGT-GA--TCG----G-GCCGT-T-CC-C-T-GGCT---T----G--CGCACG
258 GCAGGGGGGACAGGTCAATCTCGACTTGCGCATTCTGCCTCTTCGGCTGACTGAGCGCCCGCACG
* * *
13993576 TTCATTTCGTGGCTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
323 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * * *
13993641 CCAGTCTAAGATCGGATCGGACTGAGGGTTACGGTAGCATGACTAGCAGCAGGATC-AGCAGCAC
388 CCAGTCTAAGATCGGATCGGACCGAAGGTTACGGTAGCAGGACCAGCAGCAGGATCGA-CAGCAT
* *
13993705 GCAGGGGGGACCGGGTCGAT-CCTCGACTTACGCATTCTGCCTCTCTGACCGACTGAGTGCCCGC
452 GCAGGGGGGTCCGGGTCGATCCCT-GACTTAC-CATTCTG-CTCTTTGACCG-CTGAGTGCCCGC
* * *
13993769 ACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTTATTCCATGTCTAAGCCCCAGCCGGACC
513 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* * *
13993834 GAGGGCTGTGGCGG-CAGACAGGTAGCGGGATCGACAG-CATGCAGAGGGGGATCGGGCTGATCC
578 --GGGCTGTGGAGGACCGACA-GT---GGGATCGATAGACAT-CAGAGGGGGATCGGGCTGATCC
* * * * **
13993897 CTAGCTTACGCATCATGCCTCT--CCGG-----C-T-GGCTGAGCACCCGTACTCTCGTTTCGTG
636 C-AGCCTACGCATTATGCCTCTCACCGGCCTCTCGTCGGCTGAGCGCCCGCAAGCTCGTTTCGTG
* * * *
13993953 GGTTGACTTAGGCATACGAAGTTCATCCCC-AGTTTAAGAATACAGACTTCTTTCCCAGTTTAAG
700 GGTTGACTTAGGCATACGAAGTTCATCCCCGA-TCTAAGCATACAGAGTTCATTCCCAGTTTAAG
*
13994017 ATCAGACCG-GACTGAGGGTTGCGACAGCAGGATCGGCAGCACGTAGGGGGGATCGAGCCAATCC
764 ATC-GACCGAGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATCG-GCCAATCC
* * * * * *
13994081 CCGGCTTGTACATTTTACCTATCCGACC-GACTGAGCG
827 CCGGCTTATATATTCTGCCTCTCTGACCGGA-TGAGCG
* *
13994118 CTCGCACACCCGTTTCGTTGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAGTC
1 C-CGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * ***
13994183 AGACCGACGGTTGTGGCACTGGGACCGACAGCACGTAAAGGGGGACCGGGTCGATCCTTAGCTTG
65 AGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTG
* * * ** *
13994248 CGCATTATGCCTTTTCGGCCAGCTTAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
130 CGCATTATGCCTCTTCGACCGGCTTAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * *
13994313 GGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATTGACAGTACAC
195 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGC
* ** * * * * * * *
13994378 AGGGGGGATCGGGTTGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCGAC-GGGGGCCCGTACG
260 AGGGGGGA-CAGGTCAATCTCGA-CTTGCGCATTCTGCCTCTTCGGCTGACTGAGCGCCCGCACG
* *
13994442 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
323 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
13994492 CCCAGTCGGA
Statistics
Matches: 1680, Mismatches: 319, Indels: 179
0.77 0.15 0.08
Matches are distributed among these distances:
836 5 0.00
837 363 0.22
838 5 0.00
840 8 0.00
841 216 0.13
842 3 0.00
844 5 0.00
845 8 0.00
846 10 0.01
847 5 0.00
849 13 0.01
850 37 0.02
851 1 0.00
852 1 0.00
853 5 0.00
854 2 0.00
855 4 0.00
856 2 0.00
857 1 0.00
858 3 0.00
860 3 0.00
863 1 0.00
864 4 0.00
866 50 0.03
868 3 0.00
869 1 0.00
870 21 0.01
871 303 0.18
872 110 0.07
873 10 0.01
874 2 0.00
875 2 0.00
876 1 0.00
877 2 0.00
879 152 0.09
880 294 0.17
881 24 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (863 bp):
CCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
GACCGAGGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGC
GCATTATGCCTCTTCGACCGGCTTAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCA
GGGGGGACAGGTCAATCTCGACTTGCGCATTCTGCCTCTTCGGCTGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGATCGGACCGAAGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAGCATGCAG
GGGGGTCCGGGTCGATCCCTGACTTACCATTCTGCTCTTTGACCGCTGAGTGCCCGCACGCTCAT
TTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGGGCTGTG
GAGGACCGACAGTGGGATCGATAGACATCAGAGGGGGATCGGGCTGATCCCAGCCTACGCATTAT
GCCTCTCACCGGCCTCTCGTCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATA
CGAAGTTCATCCCCGATCTAAGCATACAGAGTTCATTCCCAGTTTAAGATCGACCGAGACTGAGG
GTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGATCGGCCAATCCCCGGCTTATATATTCTGCC
TCTCTGACCGGATGAGCG
Found at i:13993634 original size:26 final size:26
Alignment explanation
Indices: 13993598--13993650 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13993588 CTTGGCTTAG
13993598 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
13993624 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
13993650 G
1 G
13993651 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13994522 original size:157 final size:158
Alignment explanation
Indices: 13994128--13994528 Score: 425
Period size: 157 Copynumber: 2.5 Consensus size: 158
13994118 CTCGCACACC
* * * * *
13994128 CGTTTCGTTGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAGTCAGACCGACGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
** * ** *
13994193 TTGTGGCACTGGGACCGACAGCACGTAAAGGGGGACCGGGTCGATCCTTAGCTTGCGCATTATGC
66 TTGTGGCACCAGGACTGACAGCACG-AAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGC
* *
13994258 CTTTTCGGCCAGCTTAGCACCCGCACGCT
130 CTCTTCGGCCAGCTGAGCACCCGCACGCT
* * ** * *
13994287 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGACCAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-TCGGACCGAG
* * * * * * * *
13994350 GGTTGCGGCAGCAGGATTGACAGTAC-ACAGGGGGGATCGGGTTGATCCCCAGCTTACGCATTCT
64 GGTTGTGGCACCAGGACTGACAGCACGA-AAGGGGGACCGGGTCGATCCCCAGCTTACGCATTAT
* ** *
13994414 GCCTCTTCGGCC-GAC-GGGGGCCCGTACGCT
128 GCCTCTTCGGCCAG-CTGAGCACCCGCACGCT
*
13994444 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
*
13994509 TTGTGCCACCAGGACTGACA
66 TTGTGGCACCAGGACTGACA
13994529 ATAGGATCGA
Statistics
Matches: 194, Mismatches: 42, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
157 80 0.41
158 49 0.25
159 65 0.34
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
TTGTGGCACCAGGACTGACAGCACGAAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCC
TCTTCGGCCAGCTGAGCACCCGCACGCT
Found at i:13995444 original size:55 final size:55
Alignment explanation
Indices: 13995360--13995468 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
13995350 GCTGCAGCAC
* * *
13995360 ACCAGTCGCCCGCACGCAAGGTTGACACCAACCTTTATGCTAGTCCCGCAAGGGG
1 ACCAGTCACCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGG
* *
13995415 ACCAGTCACCCGCATGCATGGTTGACACCAACCATCATGCTAGTCCCGCAAGGG
1 ACCAGTCACCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGG
13995469 ACTTGGGTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.25, C:0.35, G:0.24, T:0.17
Consensus pattern (55 bp):
ACCAGTCACCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGG
Found at i:13997545 original size:24 final size:24
Alignment explanation
Indices: 13997518--13997572 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
13997508 TCGTGATCTT
13997518 CTGACCACAAG-AACTCACGGTCCA
1 CTGACCA-AAGTAACTCACGGTCCA
* * * *
13997542 CTGACTAACGTAGCTCATGGTCCA
1 CTGACCAAAGTAACTCACGGTCCA
13997566 CTGACCA
1 CTGACCA
13997573 TCTCGCTTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (24 bp):
CTGACCAAAGTAACTCACGGTCCA
Found at i:13998810 original size:55 final size:55
Alignment explanation
Indices: 13998715--13998823 Score: 155
Period size: 55 Copynumber: 2.0 Consensus size: 55
13998705 GCTGCAGCAC
* * * *
13998715 ACCAGTCGCCCGCACGCAAGGTTGACACCAACCTTTATGCTAGTCTTGCAAGGGG
1 ACCAGCCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCTCGCAAGGGG
* * *
13998770 ACCAGCCGCCCGCATGCATGGTTGACACTAACCATCATGCTAGTCTCGCAAGGG
1 ACCAGCCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCTCGCAAGGG
13998824 ACTTGGGTGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (55 bp):
ACCAGCCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCTCGCAAGGGG
Found at i:14000257 original size:27 final size:26
Alignment explanation
Indices: 14000217--14000312 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 26
14000207 GTTGACTTAG
14000217 GCATAC-GGAGTTCATCCATAGTCTAA
1 GCATACAGGAGTTCATCC-TAGTCTAA
14000243 GCACTACAGGA-TTCATTCCTCAGTCTAA
1 GCA-TACAGGAGTTCA-TCCT-AGTCTAA
* *
14000271 GCGTAC-GGAGTTTATCCCTAGTCTAAA
1 GCATACAGGAGTTCAT-CCTAGTCT-AA
14000298 GCATACA-GAGTTCAT
1 GCATACAGGAGTTCAT
14000313 TCCCAATCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
26 12 0.21
27 31 0.53
28 15 0.26
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGGAGTTCATCCTAGTCTAA
Found at i:14000282 original size:54 final size:53
Alignment explanation
Indices: 14000220--14000324 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
14000210 GACTTAGGCA
*
14000220 TACGGAGTTCATCCATAGTCT-AAGCACTACAG-GATTCATTCCTCAGTCTAAGCG
1 TACGGAGTTCATCCATAGTCTAAAGCA-TACAGAG-TTCATTCC-CAATCTAAGCG
* *
14000274 TACGGAGTTTATCCCTAGTCTAAAGCATACAGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCATAGTCTAAAGCATACAGAGTTCATTCCCAATCTAAG
14000325 ATCGACGGGG
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
53 8 0.17
54 32 0.70
55 6 0.13
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (53 bp):
TACGGAGTTCATCCATAGTCTAAAGCATACAGAGTTCATTCCCAATCTAAGCG
Found at i:14000322 original size:27 final size:25
Alignment explanation
Indices: 14000217--14000324 Score: 67
Period size: 27 Copynumber: 4.0 Consensus size: 25
14000207 GTTGACTTAG
*
14000217 GCATACGGAGTTCAT-CCATAGTCTAA
1 GCATACAGAGTTCATCCCA-A-TCTAA
*
14000243 GCACTACAG-GATTCATTCCTCAGTCTAA
1 GCA-TACAGAG-TTCA-TCC-CAATCTAA
* * * *
14000271 GCGTACGGAGTTTATCCCTAGTCTAAA
1 GCATACAGAGTTCATCCC-AATCT-AA
14000298 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCA-TCCCAATCTAA
14000324 G
1 G
14000325 ATCGACGGGG
Statistics
Matches: 64, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
25 1 0.02
26 15 0.23
27 32 0.50
28 13 0.20
29 1 0.02
30 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAATCTAA
Found at i:14000789 original size:28 final size:26
Alignment explanation
Indices: 14000757--14000837 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 26
14000747 GTTGGCTTAG
14000757 GCATACGAAGTTCATT-CCATGTCTTAA
1 GCATACGAAGTTCATTCCCA-GTC-TAA
*
14000784 GTCATACGGAGTTCATTCCCAGTCTAA
1 G-CATACGAAGTTCATTCCCAGTCTAA
14000811 GCATAC-AGAGTTCATTTCCCAG-CTAA
1 GCATACGA-AGTTCA-TTCCCAGTCTAA
14000837 G
1 G
14000838 ACCGGGATTG
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
26 16 0.33
27 12 0.25
28 17 0.35
29 3 0.06
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14000822 original size:26 final size:25
Alignment explanation
Indices: 14000757--14000837 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 25
14000747 GTTGGCTTAG
14000757 GCATACGAAGTTCATT-CCATGTCTTAA
1 GCATACG-AGTTCATTCCCA-GTC-TAA
14000784 GTCATACGGAGTTCATTCCCAGTCTAA
1 G-CATAC-GAGTTCATTCCCAGTCTAA
14000811 GCATACAGAGTTCATTTCCCAG-CTAA
1 GCATAC-GAGTTCA-TTCCCAGTCTAA
14000837 G
1 G
14000838 ACCGGGATTG
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
26 17 0.35
27 12 0.24
28 16 0.33
29 4 0.08
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:14001018 original size:26 final size:26
Alignment explanation
Indices: 14000988--14001040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14000978 GTTGACTTAG
14000988 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
14001014 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
14001040 G
1 G
14001041 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:14001408 original size:12 final size:12
Alignment explanation
Indices: 14001370--14001408 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
14001360 CAATCGGACC
*
14001370 GATTGGCAGCAG
1 GATTGGCAACAG
*
14001382 GACTGGCAACAG
1 GATTGGCAACAG
14001394 GATTGGCAACAG
1 GATTGGCAACAG
14001406 GAT
1 GAT
14001409 CCCCAGTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.36, T:0.15
Consensus pattern (12 bp):
GATTGGCAACAG
Found at i:14001456 original size:26 final size:26
Alignment explanation
Indices: 14001410--14001498 Score: 115
Period size: 26 Copynumber: 3.4 Consensus size: 26
14001400 CAACAGGATC
*
14001410 CCCAGTCTAAGCATACAGAGTTCATT
1 CCCAGTCTAAGCATACGGAGTTCATT
* * * * *
14001436 CTCAGTCTAAACGTACGGAGTTTATC
1 CCCAGTCTAAGCATACGGAGTTCATT
*
14001462 CCCAGTCTAAGCATACGAAGTTCATT
1 CCCAGTCTAAGCATACGGAGTTCATT
14001488 CCCAGTCTAAG
1 CCCAGTCTAAG
14001499 ATCGGACCAG
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CCCAGTCTAAGCATACGGAGTTCATT
Found at i:14002425 original size:26 final size:25
Alignment explanation
Indices: 14002395--14002446 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14002385 GTTGGCTTAG
14002395 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
14002421 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
14002446 G
1 G
14002447 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:14002810 original size:26 final size:26
Alignment explanation
Indices: 14002773--14002825 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14002763 GTTGACTTAG
14002773 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
14002799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14002825 G
1 G
14002826 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14003169 original size:159 final size:157
Alignment explanation
Indices: 14002799--14003299 Score: 506
Period size: 159 Copynumber: 3.2 Consensus size: 157
14002789 CCTAGTCTAA
** * *
14002799 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTACGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCG-CAGCAGGATCGATA
* * * *
14002864 GCACATAG-GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGTC
65 GCACATAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCC
* * * *
14002928 CGTACGCCCATTTCATCGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * *** * * *
14002956 GCATAGGGAGTTCATT-GCATGTCTAACCCCCA-ACCAGTTCGAGGGTTGTGGCAGCAGGAGT-G
1 GCATACGGAGTTCATTCCCA-GTCTAA-GATCAGATCAGATCGAGGGTTG-CGCAGCAGGA-TCG
* * * * * *
14003018 ATAGCACGTAGTAAGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAG
62 ATAGCACATAG-AGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAG
* **
14003083 CGCCCGCATGCTCATTTCGTGGGTTAACTTAG
126 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
14003115 GCATACGCAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGCTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGC-GCAGCAGGATCGATA
* * * ** * * *
14003180 GAACATAGAGGGGACCGGGCCGATCCCCAGTTTGTACATTTTACCTCTCCGATCGACTGAGCACC
65 GCACATAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCC
*
14003245 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
**
14003273 GCATACGGAGTTCATTCCGTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
14003300 CCCCAGCCGG
Statistics
Matches: 271, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 52 0.19
158 98 0.36
159 117 0.43
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGCAGCAGGATCGATAG
CACATAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:14003328 original size:158 final size:157
Alignment explanation
Indices: 14002833--14003338 Score: 464
Period size: 158 Copynumber: 3.2 Consensus size: 157
14002823 AAGATTGGAT
* ** **
14002833 CAGATCGAGGGTTACGACAGCAGGATCGGTAGCACATAG-GGGGACCGGGCCGATCCCCGACTTG
1 CAGACCGAGGGTTGTGACAGCAGGATCGACAGCACATAGAGGGGACCGGGCCGATCCCCG-CTTG
* * * * * * * *
14002897 CGCATTCTGCCTCTCCGACCGACTGAGCGTCCGTACGCCCATTTCATCGGTTGGCTTAGGCATAG
65 CGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * *
14002962 GGAGTTCATTGCATGTCTAACCCCCAAC
130 GGAGTTCATTCCATGTCTAAGCCCCAGC
** * * * *
14002990 CAGTTCGAGGGTTGTGGCAGCAGGAGT-GATAGCACGTAGTAAGGGACCGGGCCGATCCCCGGCT
1 CAGACCGAGGGTTGTGACAGCAGGA-TCGACAGCACATAG-AGGGGACCGGGCCGATCCCC-GCT
* * * * * **
14003054 TACGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCATGCTCATTTCGTGGGTTAACTTAGGCAT
63 TGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* ** *
14003119 ACGCAGTTCATTCCCA-GTCTAAG-ATCAGAT
128 ACGGAGTTCATT-CCATGTCTAAGCCCCAG-C
* * * * *
14003149 CAGACCGAGGGCTG-CAGCAGCAAGATCGACAGAACATAGAGGGGACCGGGCCGATCCCCAGTTT
1 CAGACCGAGGGTTGTGA-CAGCAGGATCGACAGCACATAGAGGGGACCGGGCCGATCCCC-GCTT
** * * * *
14003213 GTACATTTTACCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
64 GCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
*
14003278 CGGAGTTCATTCCGTGTCTAAGCCCCAGC
129 CGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
14003307 CGGACCTAGAGTTGTGACAGCAGGACCGACAG
1 CAGACCGAGGGTTGTGACAGCAGGATCGACAG
14003339 TGGGATCGGC
Statistics
Matches: 272, Mismatches: 66, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 33 0.12
158 118 0.43
159 118 0.43
160 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
CAGACCGAGGGTTGTGACAGCAGGATCGACAGCACATAGAGGGGACCGGGCCGATCCCCGCTTGC
GCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:14003878 original size:27 final size:26
Alignment explanation
Indices: 14003820--14003879 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
14003810 TAGGCACACG
* *
14003820 GAGTTCATCCCCAGTCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCAGACC
*
14003846 GAGTTCATTCCCAGTCTAAGATCAGACC
1 GAGTTCATCCCCAGTCTAAG--CAGACC
14003874 G-GTTCA
1 GAGTTCA
14003880 AGGGTTGCGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 19 0.66
27 5 0.17
28 5 0.17
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCAGACC
Found at i:14003918 original size:356 final size:358
Alignment explanation
Indices: 14003115--14004047 Score: 979
Period size: 356 Copynumber: 2.6 Consensus size: 358
14003105 GTTAACTTAG
* * * * * * * * * *
14003115 GCATACGCAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGCTGC-AGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGA-CAGCAGGATCGAT
* ** * * * * *
14003179 AG-A-ACATAGAGGGGACCGGGCCGATCCCCAGTTTGTACATTTTACCTCTCCGATCGACTGAGC
65 AGCACGCA-AG-GGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGC
*
14003242 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAGCCCCAGC
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
14003307 CGGACCTAGAGTTGTGACAGCAGGACCGACAGTGGGATCGGCAGCACGCAAAGGGGGATCGAGCT
193 CGGACC-AGGGTTGTG-GAGCAAGACCGACA--GGCAT---C-GCACG--AAGGGGGATCGAGCT
* * * * *
14003372 GATCCCCGGCTTATGTATTATGCCTCTCCATCCGGCCTCTTCGATCGGCTGAGCTCCCGCACGCT
248 GATCCCCGGCTTATGCATTATGCCTCTCCATCCGACCTCTTCGATCGACTGAACGCCCGCACGCT
* * *
14003437 CGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAA
313 CATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
* * * ** * * *
14003483 GCATACGGTGTTCATTCCTAATCTAAGATCGGATTGGATCGAGGGTTACGACAGTAGGATTGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGATA
* * *
14003548 GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTTAGCACC
66 GCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCACC
* *
14003613 CGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATTTCTAAGCCCCAGCCGG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * *
14003678 ACCGAGGGGTTGTGGAGTAAGACCGACA-GCAT-GCA-G-AGGGGGATCGGGCTGATCCCTGG-T
196 ACC-A-GGGTTGTGGAGCAAGACCGACAGGCATCGCACGAAGGGGGATCGAGCTGATCCCCGGCT
* *
14003738 T-TGCACATTATGCCTCTCCGAT-CGACCTTTTCGATCGACTGAACGCCCGCACGCTCATTTCGT
259 TATG--CATTATGCCTCTCC-ATCCGACCTCTTCGATCGACTGAACGCCCGCACGCTCATTTCAT
14003801 GGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
321 GGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
* * * ** * *
14003839 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGTTCAAGGGTTGCGGTAGCAGGATCGGTT
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGATA
* * * ** * * * *
14003904 GTACGCAAGGGGGACGGGGTCGAT-CCTCGGCTTACGCATTCTGCCTCTCGGGCCGGCTGAGCGC
66 GCACGCAAGGGGGACCGGGCCGATCCCT-GGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCAC
* * * * *
14003968 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
14004033 GACCAAGGGTTGTGG
195 GACC-AGGGTTGTGG
14004048 CAGCGGGATC
Statistics
Matches: 476, Mismatches: 81, Indels: 29
0.81 0.14 0.05
Matches are distributed among these distances:
354 2 0.00
355 14 0.03
356 265 0.56
357 2 0.00
359 1 0.00
360 3 0.01
365 3 0.01
368 174 0.37
369 10 0.02
370 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (358 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGATA
GCACGCAAGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCAGGGTTGTGGAGCAAGACCGACAGGCATCGCACGAAGGGGGATCGAGCTGATCCCCGGCTTA
TGCATTATGCCTCTCCATCCGACCTCTTCGATCGACTGAACGCCCGCACGCTCATTTCATGGGTT
GACTTAGGCACACGGAGTTCATCCCCAGTCTAA
Found at i:14004063 original size:356 final size:354
Alignment explanation
Indices: 14003223--14004117 Score: 1006
Period size: 356 Copynumber: 2.5 Consensus size: 354
14003213 GTACATTTTA
*
14003223 CCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
14003288 TCCGTGTCTAAGCCCCAGCCGGACCTAGAGTTGTGACAGCAGGACCGACAGTGGGATCGGCAGCA
66 TCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTG---GC---A--G-C---GGGATCGACAGCA
* * * *
14003353 CGCAAAGGGGGATCGAGCTGATCCCCGGCTTATGTATTATGCCTCTCC-ATCCGGCCTCTTCGAT
119 CGCAGAGGGGGATCGGGCTGATCCCCGG-TT-TGCATTATGCCTCTCCGAT-CGACCTCTTCGAT
* * * * * *
14003417 CGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTA
181 CGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTA
* * * ** * * *
14003482 AGCATACGGTGTTCATTCCTAATCTAAGATCGGATTGGATCGAGGGTTACGACAGTAGGATTGAT
246 AGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGAT
* **
14003547 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTG
311 AGCACGCAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTG
* *
14003591 CCTCTCCGACCGACTTAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGGAGTTCAT
1 CCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * *** * *
14003656 TCCATTTCTAAGCCCCAGCCGGACCGAGGGGTTGTGG-AGTAAGACCGACAGCATGCAGAGGGGG
66 TCCATGTCTAAGCCCCAGCCGGACC-AAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGG
* *
14003720 ATCGGGCTGATCCCTGGTTTGCACATTATGCCTCTCCGATCGACCTTTTCGATCGACTGAACGCC
130 ATCGGGCTGATCCCCGGTTTG--CATTATGCCTCTCCGATCGACCTCTTCGATCGACTGAACGCC
*
14003785 CGCACGCTCATTTCGTGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
193 CGCACGCTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * ** * * *
14003850 TCATTCCCAGTCTAAGATCAGACCGGTTCAAGGGTTGCGGTAGCAGGATCGGTTGTACGCAAGGG
258 TCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGATAGCACGCAAGGG
* * *
14003915 GGACGGGGTCGAT-CCTCGGCTTACGCATTCTG
323 GGACCGAGCCGATCCCT-GGCTTACGCATTCTG
* * * * * * * *
14003947 CCTCTCGGGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
*
14004012 TCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCAGCA-GGGG
66 TCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCAG-AGGGGG
* * * *
14004076 ATCGGGTTGAACCCCGAATTGTGCATTATGCCTCTTCGATCG
130 ATCGGGCTGATCCCCG-GTT-TGCATTATGCCTCTCCGATCG
14004118 GCTCAGTGCC
Statistics
Matches: 446, Mismatches: 72, Indels: 30
0.81 0.13 0.05
Matches are distributed among these distances:
354 2 0.00
355 15 0.03
356 327 0.73
357 5 0.01
358 2 0.00
360 1 0.00
362 1 0.00
366 1 0.00
368 85 0.19
369 7 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (354 bp):
CCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGA
TCGGGCTGATCCCCGGTTTGCATTATGCCTCTCCGATCGACCTCTTCGATCGACTGAACGCCCGC
ACGCTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGATAGCACGCAAGGGGGA
CCGAGCCGATCCCTGGCTTACGCATTCTG
Found at i:14005545 original size:159 final size:155
Alignment explanation
Indices: 14005238--14005741 Score: 466
Period size: 159 Copynumber: 3.2 Consensus size: 155
14005228 CCTAGTTTAT
* ** *
14005238 GCATATGGAGTTCATTCCTAGTCTAAGATTAGATCGGACCGAGGGTTACGACAGTCGGAT-GACA
1 GCATACGGAGTTCATTCC-AGTCTAAGACCAGACCGGACCGAGGGTTACGACAG-CGGATCGACA
* * *
14005302 GCACGCAG-GGGGGAACGAGCCGATCCCCGGCTTGCGCATTCTACCTTTTCGA-CAGGTTGAACG
64 GCACGCAGAGGGGGACCG-GCCGAT-CCCGGCTTGCGCATTCTGCCTTTTCGATCA-GCTGAACG
* *
14005365 CACGCACGC-CTGTTTCATGGGTTGGCTTAG
126 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** *
14005395 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTACGACAGC-GGATCGAC
* **
14005459 AGCACGCAGAGGGGGACCGGTCCGATCCCAGGCTTGCGCATTATGCCTTTTCGATCAGCCCAACG
63 AGCACGCAGAGGGGGACCGG-CCGATCCC-GGCTTGCGCATTCTGCCTTTTCGATCAGCTGAACG
* * * *
14005524 CCCGTACGCTCGTTTTGTGGGTTGACTTAT
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * ** *
14005554 GCACACAGAGTTCATTCCCAATCTAAGATCAGACCAGATTGAGGGTTACGACAGCAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCGAGGGTTACGACAGC-GGATCGACA
* * * *
14005619 GCACGCA-AGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCC-TCTCTGGTC-GACTGAG
64 GCACGCAGA-GGGGGACC-GGCCGATCC-CGGCTTGCGCATTCTGCCTTTTC-GATCAG-CTGAA
*
14005681 CGCCCGCACTCTCGTTTCGTGGGTTTGGCTTAG
124 CGCCCGCACGCTCGTTTCGTGGG-TTGGCTTAG
14005714 GCATACGGAGTTCATTTCCAGTCTAAGA
1 GCATACGGAGTTCA-TTCCAGTCTAAGA
14005742 TTTTGAGCCA
Statistics
Matches: 280, Mismatches: 49, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 45 0.16
158 26 0.09
159 167 0.60
160 38 0.14
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACCGGACCGAGGGTTACGACAGCGGATCGACAGC
ACGCAGAGGGGGACCGGCCGATCCCGGCTTGCGCATTCTGCCTTTTCGATCAGCTGAACGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14006656 original size:159 final size:159
Alignment explanation
Indices: 14006493--14006783 Score: 363
Period size: 159 Copynumber: 1.8 Consensus size: 159
14006483 AGGGGGACCG
* * * ** *
14006493 GGCCGATCCCCGGCTTATGTATTATGCATATCCGGTC-GTCTCAGCG-CTCGCACACTCGTTTCG
1 GGCCGATCCCCGACTTACGCATTATGCATATCCGACCGGT-TCAACGTCT-GCACACTCGTTTCG
14006556 TGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAAATCGGA-CTGAGGGTTGCGG
64 TGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAAATCGGATC-GAGGGTTGCGG
14006620 CAGCAAGATCGACAGCACGCAGGGGGGTATCA
128 CAGCAAGATCGACAGCACGCAGGGGGGTATCA
* * * * * * *
14006652 GGCCGATCCCTGACTTGCGCATTCTGCATCTCTGACCGGTTGAACGTCTGCACGCTCGTTTCGTG
1 GGCCGATCCCCGACTTACGCATTATGCATATCCGACCGGTTCAACGTCTGCACACTCGTTTCGTG
** * * **
14006717 GGTTGGCTTAGGCATACGGAGTTCATTCCTAATTTAAGATTGGATCGGATCGAGGGTTGCGGCAG
66 GGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAAATCGGATCGAGGGTTGCGGCAG
14006782 CA
131 CA
14006784 CCCAACAGCA
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
159 105 0.95
160 5 0.05
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (159 bp):
GGCCGATCCCCGACTTACGCATTATGCATATCCGACCGGTTCAACGTCTGCACACTCGTTTCGTG
GGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTAAATCGGATCGAGGGTTGCGGCAG
CAAGATCGACAGCACGCAGGGGGGTATCA
Found at i:14007097 original size:26 final size:26
Alignment explanation
Indices: 14007067--14007119 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14007057 GTTGACTTAG
14007067 GCATACAGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
14007093 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14007119 G
1 G
14007120 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14007604 original size:26 final size:26
Alignment explanation
Indices: 14007567--14007619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14007557 GTTGGCTTAG
14007567 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
14007593 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
14007619 G
1 G
14007620 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14009242 original size:26 final size:26
Alignment explanation
Indices: 14009205--14009257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14009195 GTTGACTTAG
*
14009205 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
14009231 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14009257 G
1 G
14009258 ATCATACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14009706 original size:157 final size:159
Alignment explanation
Indices: 14009287--14009730 Score: 447
Period size: 157 Copynumber: 2.8 Consensus size: 159
14009277 TGCGGTAGCG
* * ** * *
14009287 AGGATCGGCAGCACGCAGA--GGGATTGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATT
1 AGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGATC
* * * * *
14009349 GGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
* * *
14009414 GCCCCAGCCGGACTGAGGGTTGTGGCAGC
131 GCACCAGCCGAACTGAGAGTTGTGGCAGC
* * * * * * * *
14009443 GGGATCGGCAGCACACAGAGGGGGACCGAGCTGATCCCCGGC-TGCGCATTATGCCTATTCGGTC
1 AGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGATC
* * ** * *
14009507 GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTTACTT-TGCATACAGAGTTCATGCCCA-GTCTA
66 GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTA
* * * *
14009570 AG-ATCAGATCGAATTGAGAGTTGTGGCAGT
130 AGCACCAG-CCGAACTGAGAGTTGTGGCAGC
* * ** * * *
14009600 AGGATCGATAGTACGTAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTACGACC
1 AGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGATC
*
14009664 GGCTAAGCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
14009728 GCA
131 GCA
14009731 TATGGAGTTC
Statistics
Matches: 229, Mismatches: 50, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
156 67 0.29
157 94 0.41
158 62 0.27
159 6 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
AGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACGATC
GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
GCACCAGCCGAACTGAGAGTTGTGGCAGC
Found at i:14009738 original size:26 final size:26
Alignment explanation
Indices: 14009702--14009754 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14009692 GTTGGCTTAG
14009702 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14009728 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14009754 G
1 G
14009755 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14010450 original size:26 final size:26
Alignment explanation
Indices: 14010421--14010473 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14010411 GTTGACTTAG
14010421 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
14010447 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14010473 G
1 G
14010474 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14011268 original size:159 final size:157
Alignment explanation
Indices: 14010946--14011401 Score: 515
Period size: 159 Copynumber: 2.9 Consensus size: 157
14010936 CATTGACTTA
* * *
14010946 GGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCCCCAGCTTGTGCATTCTGCCTCTC
1 GGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * *
14011011 CGA-TCGG-TTGAGCGTCCGTAAGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCA
66 CGACT-GGCTT-AGCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCA
* *
14011074 TGTCTAAGCCCCAGTCGGACCGAGGGTTGT
128 TGTCTAAGCACCAGCCGGACCGAGGGTTGT
* * * * * * *
14011104 TGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * *
14011169 TCGACTGGCTTAGCGCCTGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-T
65 CCGACTGGCTTAGCGCC-GCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCAT
*
14011233 AGTCTAAG-ATCAGACCGGACCGAGGGTTGT
129 -GTCTAAGCACCAG-CCGGACCGAGGGTTGT
* ** * * *
14011263 GGCAGCAGGATCGACAACACATAGGGGAGGATCGGGCCGATCCCCGGCTTGGGCATTCTACCTCT
1 GGCAGCAGGATCGACAGCACGCAGGGG-GGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * *
14011328 CCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CCGACTGGCTTAGCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCAT
14011393 GTCTAAGCA
129 GTCTAAGCA
14011402 TACGGAGTTC
Statistics
Matches: 246, Mismatches: 42, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
158 28 0.11
159 211 0.86
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGACTGGCTTAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGT
CTAAGCACCAGCCGGACCGAGGGTTGT
Found at i:14011409 original size:26 final size:26
Alignment explanation
Indices: 14011373--14011425 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14011363 GTTGGCTTAG
14011373 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14011399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14011425 G
1 G
14011426 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14014081 original size:26 final size:26
Alignment explanation
Indices: 14014045--14014096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14014035 TTGGCTTAGC
*
14014045 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
14014071 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
14014097 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Done.