Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 103 of 402
Found at i:14014560 original size:26 final size:26
Alignment explanation
Indices: 14014530--14014582 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14014520 GTTGACTTAG
14014530 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14014556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14014582 G
1 G
14014583 ATCGAACAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14014875 original size:159 final size:158
Alignment explanation
Indices: 14014644--14015048 Score: 422
Period size: 159 Copynumber: 2.6 Consensus size: 158
14014634 ATCGAGTCGG
* * * * ** * * * *
14014644 TCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGCACCC-CTACGCCCGTTTCGTGGGTTA
1 TCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCCGC-ACGCCCATTTCGTGGGTTG
* **
14014708 GCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGT-TGCACCGAGGGCTGTGGCAGCGGG
65 GCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCAG-ACCGAGGGCTGTCACAGCGGG
*
14014772 A-CTGACAGCACGCAAAGGGGGACCGAGCCAA
129 ACCAG-CAGCACGCAAAGGGGGACCGA-CCAA
* * * * *
14014803 TCCCTGGCTTGTGCATTATGCCTCTCTGGTC-AGCTCAGCGCCCGCACGCCCATTTCGTAGGTTG
1 TCCCCGACTTGCGCATTATGCCTCTCCGGTCGA-CTCAGCGCCCGCACGCCCATTTCGTGGGTTG
* * * *
14014867 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTCATAGTGGGA
65 GCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCAGACCGAGGGCTGTCACAGCGGGA
* * * *
14014932 CCAGTAGCAGGCAGAGGGGGACCGACCAG
130 CCAGCAGCACGCAAAGGGGGACCGACCAA
* * * * * *
14014961 TCCCCGACTTGCGTATTCTGCCTCTCCGGTCGACTGAGTGCCCGCATGCTCATTTCGTGGGTTGG
1 TCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCCGCACGCCCATTTCGTGGGTTGG
* *
14015026 CTTAGGCATATGGAGTTTATTCC
66 CTTAGGCATAGGGAGTTCATTCC
14015049 CAGTCTAAGA
Statistics
Matches: 203, Mismatches: 38, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
158 77 0.38
159 122 0.60
160 4 0.02
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.24
Consensus pattern (158 bp):
TCCCCGACTTGCGCATTATGCCTCTCCGGTCGACTCAGCGCCCGCACGCCCATTTCGTGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCAGACCGAGGGCTGTCACAGCGGGAC
CAGCAGCACGCAAAGGGGGACCGACCAA
Found at i:14015055 original size:158 final size:159
Alignment explanation
Indices: 14014689--14015057 Score: 424
Period size: 159 Copynumber: 2.3 Consensus size: 159
14014679 GAGCACCCCT
* * * *
14014689 ACGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTTGCACC
1 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAGCACC
** * * * *
14014754 GAGGGCTGTGGCAGCGGGACTGACAGCACGCAAAGGGGGACCGAGCCAATCCCTGGCTTGTGCAT
66 GAGGGCTGTCACAGCGGGACAGACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTGCGCAT
*
14014819 TATGCCTCTCTGGTCAGCTCAGCGCCCGC
131 TATGCCTCTCCGGTCAGCTCAGCGCCCGC
*
14014848 ACGCCCATTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-AC
1 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-AGCAC
* * * * * * * *
14014912 CGAGGGTTGTCATAGTGGGACCAG-TAGCAGGCAGAGGGGGACCGA-CCAGTCCCCGACTTGCGT
65 CGAGGGCTGTCACAGCGGGA-CAGACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTGCGC
* * *
14014975 ATTCTGCCTCTCCGGTC-GACTGAGTGCCCGC
129 ATTATGCCTCTCCGGTCAG-CTCAGCGCCCGC
* * * *
14015006 ATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTTATTCCCA-GTCTAAG
1 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
14015058 AGTTTGAGCC
Statistics
Matches: 178, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
157 1 0.01
158 81 0.46
159 93 0.52
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAGCACC
GAGGGCTGTCACAGCGGGACAGACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTGCGCAT
TATGCCTCTCCGGTCAGCTCAGCGCCCGC
Found at i:14015780 original size:26 final size:26
Alignment explanation
Indices: 14015728--14015780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14015718 GTTGACTTAG
*
14015728 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
14015754 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
14015780 G
1 G
14015781 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:14016115 original size:158 final size:155
Alignment explanation
Indices: 14015754--14016242 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 155
14015744 CCTAGTTTAA
* *
14015754 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGTGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * ** * * * *
14015819 GCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCAC
66 GCACGCAGAGGGGGACCGAGCCAATCCCCAGTTTGC-CATTCTGCCTCTCTGACAGCTAGAG--C
*
14015883 CCGCACGC-CTGTTTTGTGGGTTGGCTTAG
128 CCGCACGCTC-GTTTCGTGGGTT-GCTTAG
* * ** * * * *
14015912 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCTGGACCAAGGGTTGTGGCAGCAAGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATC-GGACCGAGGGTTGTGACAGCAGGATC-G
* * *
14015974 ACAGCACGCAGAGGGGGACCGAGCCAATCCCCAGTTTGCACATTATGCCTCTCTGACTGCTCAAA
63 ACAGCACGCAGAGGGGGACCGAGCCAATCCCCAGTTTGC-CATTCTGCCTCTCTGACAGCT-AGA
*
14016039 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTG-CTTAG
* * * *
14016070 GCACACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTATGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
** ** * * * * * *
14016135 GCATACAGA-GGACACCGAGTCAGTCCTCGACTTATG-CATTCTGCCTCTCCGACAAGCTGAGCG
66 GCACGCAGAGGGGGACCGAGCCAATCC-CCAGTT-TGCCATTCTGCCTCTCTGAC-AGCT-AGAG
*
14016198 CCCGCACACTCGTTTCGTGGGTTGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGCTTAG
14016227 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
14016243 TCATGTCTAA
Statistics
Matches: 266, Mismatches: 52, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 55 0.21
158 159 0.60
159 50 0.19
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGAGGGGGACCGAGCCAATCCCCAGTTTGCCATTCTGCCTCTCTGACAGCTAGAGCCCG
CACGCTCGTTTCGTGGGTTGCTTAG
Found at i:14016276 original size:26 final size:26
Alignment explanation
Indices: 14016227--14016279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14016217 GGTTGCTTAG
*
14016227 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14016253 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
14016279 G
1 G
14016280 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14016934 original size:184 final size:184
Alignment explanation
Indices: 14016563--14016989 Score: 450
Period size: 184 Copynumber: 2.3 Consensus size: 184
14016553 CCGACCGAGC
* * *
14016563 GCCCGTACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGCTCATCCCTAGTCTAAGCATACGG
1 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * * * * * * * *
14016628 AGTTTATTTCTAGTCTAAGATCATACTAGACCGAGGGTTGCAGTACCAGGATCGGTAGCACACGG
66 AGTTCATTCCCAGTCTAAGATCATACTAGACCGAAGGTTGCAGCAACAAGATCAGCAGCACACAG
* * * * *
14016693 GGGGGATTGGGCCGATCTTCGGGTTACACATTCTGCCTCTCCAGCCGGTTGAGT
131 GGGGGACTGGGCCGATCCTCGGCTTACACATTCTGCCTCTCCAGCCGGCTAAGT
* * *
14016747 GCCCGCT-CGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATCCCCAGTCTAAGCATATG
1 GCCCG-TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
* * * * *
14016811 GAGTTCATTCCCAGTCTAAGATCGA-ACTGGATCTAAGGTTGCGGCAACAAGATCAGCAGCACGC
65 GAGTTCATTCCCAGTCTAAGATC-ATACTAGACCGAAGGTTGCAGCAACAAGATCAGCAGCACAC
*** *
14016875 AGGGGGGACTGGGCCGATCC-CTGGCTTGTGCATTCTGCCTCTCC-GACCTGCTAAGT
129 AGGGGGGACTGGGCCGATCCTC-GGCTTACACATTCTGCCTCTCCAG-CCGGCTAAGT
* * * * * *
14016931 GCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGC
1 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
14016990 CCTAGTCGGA
Statistics
Matches: 199, Mismatches: 38, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
183 6 0.03
184 191 0.96
185 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (184 bp):
GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCATACTAGACCGAAGGTTGCAGCAACAAGATCAGCAGCACACAG
GGGGGACTGGGCCGATCCTCGGCTTACACATTCTGCCTCTCCAGCCGGCTAAGT
Found at i:14017475 original size:26 final size:26
Alignment explanation
Indices: 14017437--14017487 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14017427 TTGGCTTAGG
14017437 CATAGGGAGTTCATT-CCATGTCTAAT
1 CATAGGGAGTTCATTCCCA-GTCTAAT
* *
14017463 CATATGGATTTCATTCCCAGTCTAA
1 CATAGGGAGTTCATTCCCAGTCTAA
14017488 GATCAGACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (26 bp):
CATAGGGAGTTCATTCCCAGTCTAAT
Found at i:14017846 original size:26 final size:26
Alignment explanation
Indices: 14017816--14017868 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14017806 GTTGACTTAG
*
14017816 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14017842 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14017868 G
1 G
14017869 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14018327 original size:158 final size:157
Alignment explanation
Indices: 14017842--14018343 Score: 450
Period size: 158 Copynumber: 3.2 Consensus size: 157
14017832 CCCAGTCTAA
* * ** * * * * *
14017842 GCATATAGAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGTGGCGACAGCAGGATGGCCA
1 GCATATGGAGTTCATTCCAAGTCTAAGATCGGCTCGGACCGAGGGTTGCG-CAGCAGGATCGACA
* * * *
14017907 GCATGCAGGGGGGACCAGGCCGAT-CCTCGACTTGCACATTCTGCCTCTTCGGTTGGCTGAGCGC
65 GCACGCAGGGGGGACCAGGCCGATCCCT-GGCTTGCACATTCTGCCTCTTTGGCTGGCTGAGCGC
* * * *
14017971 CCGTACGCCCATTTCATGGGTTGGCTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * *
14018000 GCATAGGGAGTTCATTGCATGTCTAAGCCCCAGC-CGGATCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATATGGAGTTCATTCCAAGTCTAAG-ATCGGCTCGGACCGAGGGTTG-CGCAGCAGGATCGAC
* * * * ** * * * * *
14018064 AGCACGCAGAGAGGGACCGGGCCAATCCCCGGCTTGCGTATTATGCCTCTCTGGCCGGCTCAACG
64 AGCACGCAG-GGGGGACCAGGCCGATCCCTGGCTTGCACATTCTGCCTCTTTGGCTGGCTGAGCG
* * *
14018129 CCCGAACACTCGTTTCGTGGGTTGACTCAG
128 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14018159 GCATACGGAGTTCATTCCAAGTCTAAGATTGGCTCAGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCAAGTCTAAGATCGGCTCGGACCGAGGGTTGC-GCAGCAGGATCGACA
* * * * * * *
14018224 GCCCGTAGGGGGGACCAGGTCGGTCCCTGGCTTGCCCAATCTGCCTCTTTGGCTGGTTGAGCGCC
65 GCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCACATTCTGCCTCTTTGGCTGGCTGAGCGCC
* *
14018289 CGCACGCTCGCTTCGTGGGTTGGCTTAG
130 CGAACGCTCGTTTCGTGGGTTGGCTTAG
*
14018317 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCAAGTCTAAG
14018344 CATACGGAGT
Statistics
Matches: 261, Mismatches: 77, Indels: 12
0.75 0.22 0.03
Matches are distributed among these distances:
158 141 0.54
159 118 0.45
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCAAGTCTAAGATCGGCTCGGACCGAGGGTTGCGCAGCAGGATCGACAG
CACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCACATTCTGCCTCTTTGGCTGGCTGAGCGCCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14018353 original size:26 final size:26
Alignment explanation
Indices: 14018317--14018369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14018307 GTTGGCTTAG
*
14018317 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14018343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14018369 G
1 G
14018370 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14018578 original size:26 final size:26
Alignment explanation
Indices: 14018528--14018580 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14018518 ATTGACTTAG
*
14018528 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
14018554 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
14018580 G
1 G
14018581 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:14018907 original size:26 final size:26
Alignment explanation
Indices: 14018871--14018923 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14018861 GTTGGCTTAG
14018871 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14018897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14018923 G
1 G
14018924 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14020132 original size:26 final size:26
Alignment explanation
Indices: 14020082--14020134 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14020072 GTTGGCTTAG
*
14020082 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
*
14020108 GCATACGGAGTTCATTCC-CGATCTAA
1 GCATACGAAGTTCATTCCACG-TCTAA
14020134 G
1 G
14020135 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACGTCTAA
Found at i:14020842 original size:26 final size:26
Alignment explanation
Indices: 14020806--14020858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14020796 GTTAACTTAG
14020806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14020832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14020858 G
1 G
14020859 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14021470 original size:184 final size:184
Alignment explanation
Indices: 14021134--14021509 Score: 533
Period size: 184 Copynumber: 2.0 Consensus size: 184
14021124 CTTGTGCATT
* ** *
14021134 ATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGCAGCAG
1 ATGTCTAAACATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAG
*
14021199 GATCGATAGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
66 GATCGATAGCACGCAGAGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
* *
14021264 TGAGCACCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCC
131 TGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-TCC
* * * * *
14021319 A-GTCTAAACGTACGGAGTTCATTCTCAGTCTAAGATCTA-ATTGGACCGAGGGTTGCAGTAGCA
1 ATGTCTAAACATACGAAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTGCAGCAGCA
* * * *
14021382 GGATCGGTAGCACGCAGAGGGGA-TCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTTCGATCG
65 GGATCGATAGCACGCAGAGGGGACT-GGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCG
* **
14021446 GCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCC
129 GCTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
14021502 ATGTCTAA
1 ATGTCTAA
14021510 GCCCCAGTTG
Statistics
Matches: 169, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
183 5 0.03
184 162 0.96
185 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
ATGTCTAAACATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAG
GATCGATAGCACGCAGAGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
TGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
Found at i:14021653 original size:159 final size:158
Alignment explanation
Indices: 14021329--14021713 Score: 375
Period size: 159 Copynumber: 2.4 Consensus size: 158
14021319 AGTCTAAACG
* * *
14021329 TACGGAGTTCATTCTCAGTCTAAGATCTAATTGGACCGAGGGTTGCAGTAGCAGGATCGGTAGCA
1 TACGGAGTTCATTCTCAGTCTAAGACCCAATTGGACCGAGGGTTGCAGTAGCAGGATCGATAGCA
* * * *
14021394 CGCAGAGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTTCGATCGGCTGAGCACCCGC
66 CGCAGAGGGGATCGGGTCGATCCCCAGCTTACACATTATGCCTCTACGATCGGCTGAGCACCCGC
* * *
14021459 ACGCCCGTTTCGTGGGTTGACTTAGGCA
131 ACGCCCGTTTCATGGGTTAACATAGGCA
* * * * ** * *
14021487 TAGGGAGTTCATTC-CATGTCTAAGCCCCAGTTGGATCGAGGGTTGTGGTAGCGGGA-CTGATGG
1 TACGGAGTTCATTCTCA-GTCTAAGACCCAATTGGACCGAGGGTTGCAGTAGCAGGATC-GATAG
* * * * **
14021550 CACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCACATTATGCCTCTACGGTCAGTTTG-GCAC
64 CACGCAGA-GGGGATCGGGTCGATCCCCAGCTTACACATTATGCCTCTACGATC-GGCTGAGCAC
* ** *
14021614 CTGCACGCTTGTTTTATGGGTTAACATAGGCA
127 CCGCACGCCCGTTTCATGGGTTAACATAGGCA
* * ** * *
14021646 TACGGAGTTCATT-TCTAGTCTAAGA-TCACACTGGAGTGAGGGTTGCAGTAGTAGGATCGACAG
1 TACGGAGTTCATTCTC-AGTCTAAGACCCA-ATTGGACCGAGGGTTGCAGTAGCAGGATCGATAG
14021709 CACGC
64 CACGC
14021714 GGGGTGGGAC
Statistics
Matches: 178, Mismatches: 41, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 57 0.32
159 113 0.63
160 5 0.03
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.26
Consensus pattern (158 bp):
TACGGAGTTCATTCTCAGTCTAAGACCCAATTGGACCGAGGGTTGCAGTAGCAGGATCGATAGCA
CGCAGAGGGGATCGGGTCGATCCCCAGCTTACACATTATGCCTCTACGATCGGCTGAGCACCCGC
ACGCCCGTTTCATGGGTTAACATAGGCA
Found at i:14021837 original size:26 final size:26
Alignment explanation
Indices: 14021801--14021853 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14021791 GTTGGCTTAG
* *
14021801 GCATATGGAGTTTA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
14021827 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
14021853 G
1 G
14021854 ATTCGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:14022566 original size:159 final size:158
Alignment explanation
Indices: 14022322--14022685 Score: 365
Period size: 158 Copynumber: 2.3 Consensus size: 158
14022312 CCCGCACACC
* * *
14022322 CATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGCGGG
1 CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACTGAGGG
* * * * *
14022387 TTGTGGCAACGGGACTGACAGCACGCA-GAAAAGGACCGGTCTGATCCTCGGCTTGCACATTATG
66 TTGTGGCAACAGGACTGACAGCACGCATG--AAGGACCGGGCCGATCCCCGGCTTACACATTATG
* *
14022451 CCTCTCCGGTCGGCTCAGCACCCGAACGCA
129 CCTCTCCAGCCGGCTCAGCACCCGAACGCA
* * * ** ** *
14022481 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCGGACTGGATTGAGG
1 CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCCAACCAGACTGAGG
* * * * * ** * ** *
14022545 GTTTTGGTAGCAGGA-TCGACAGTACGTATGGGGGACCGGGCCGGTCCCCGGCTTATGCATTCTG
65 GTTGTGGCAACAGGACT-GACAGCACGCATGAAGGACCGGGCCGATCCCCGGCTTACACATTATG
* * * *
14022609 CCTCTCTAGCCGGCTGAGCACCCGCACGCT
129 CCTCTCCAGCCGGCTCAGCACCCGAACGCA
*
14022639 CATTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAG
1 CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
14022686 CATACAAAGT
Statistics
Matches: 165, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 92 0.56
159 72 0.44
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACTGAGGG
TTGTGGCAACAGGACTGACAGCACGCATGAAGGACCGGGCCGATCCCCGGCTTACACATTATGCC
TCTCCAGCCGGCTCAGCACCCGAACGCA
Found at i:14022696 original size:26 final size:26
Alignment explanation
Indices: 14022656--14022711 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14022646 TGGGTTGGCT
**
14022656 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAAAGTTCATTCCCA-GTC
14022682 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
14022708 TAAG
1 TAAG
14022712 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:14023238 original size:26 final size:26
Alignment explanation
Indices: 14023201--14023253 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14023191 GTCGACTTAG
*
14023201 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
14023227 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14023253 G
1 G
14023254 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14023902 original size:26 final size:26
Alignment explanation
Indices: 14023866--14023916 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14023856 TTGACTTAGG
14023866 CATACGGAGTTCATCCCCAATCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
*
14023892 CATAGGGAGTTCATCCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
14023917 GTTTAGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:14024245 original size:26 final size:26
Alignment explanation
Indices: 14024207--14024259 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14024197 GTTGGCTTAG
* * *
14024207 GCATACGGCGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
*
14024233 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
14024259 G
1 G
14024260 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAGGTCTAA
Found at i:14024959 original size:26 final size:26
Alignment explanation
Indices: 14024930--14024982 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14024920 GTTGACTTAG
14024930 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
14024956 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14024982 G
1 G
14024983 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14025423 original size:158 final size:157
Alignment explanation
Indices: 14025004--14025445 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 157
14024994 CCGAGGGTTA
* * *
14025004 CGACAGCACGCAGAG-GGGATC-GGACCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCT
1 CGACAGCACACAGAGCGGGACCAGG-CCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * * * * * **
14025067 GGGTGCCCTCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCC
64 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA-GAC
* * *
14025132 CAGTCGGACCGAGGGTTGTGGCAGCAGGAT
128 CAGCCGAACCGAGGGTTGCGGCAGCAGGAT
** * *** * ** *
14025162 CGGTAGCACATAGAGCGGGATTGGGCCGATCCCTGGCTTACGCATTAAGCCTCTCCGGCCGGCTC
1 CGACAGCACACAGAGCGGGACCAGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
* * * * *
14025227 AGCCCCCG-ATCGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATTCCCAT-TCTAAGAT
65 AGCGCCCGCA-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGAC
14025290 CAGACCGAACCGAGGGTTGCGGCAGCAGGAT
128 CAG-CCGAACCGAGGGTTGCGGCAGCAGGAT
** * * ** *
14025321 CGACAGCATGCAG-GGGGGACCAGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTG
1 CGACAGCACACAGAGCGGGACCAGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
*
14025385 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
14025446 CATACGGAGT
Statistics
Matches: 227, Mismatches: 48, Indels: 18
0.77 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 103 0.45
159 114 0.50
160 6 0.03
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (157 bp):
CGACAGCACACAGAGCGGGACCAGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAG
CCGAACCGAGGGTTGCGGCAGCAGGAT
Found at i:14025455 original size:26 final size:26
Alignment explanation
Indices: 14025419--14025471 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14025409 GTTGGCTTAG
14025419 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14025445 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14025471 G
1 G
14025472 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14026021 original size:26 final size:26
Alignment explanation
Indices: 14025972--14026021 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14025962 GTTAGCTTAG
**
14025972 GCATACGGAGTTCATTCCTTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
14025998 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
14026022 TAGAGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:14026110 original size:11 final size:11
Alignment explanation
Indices: 14026094--14026126 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14026084 CCCGGGGCAC
14026094 CATCGTCGGAG
1 CATCGTCGGAG
14026105 CATCGTCGGAG
1 CATCGTCGGAG
*
14026116 CATCGCCGGAG
1 CATCGTCGGAG
14026127 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14026913 original size:26 final size:26
Alignment explanation
Indices: 14026883--14026935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14026873 GTTGACTTAG
14026883 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
14026909 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14026935 G
1 G
14026936 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14027422 original size:26 final size:26
Alignment explanation
Indices: 14027386--14027436 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14027376 TGGCTTCGGT
14027386 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
14027412 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
14027437 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:14028415 original size:59 final size:58
Alignment explanation
Indices: 14028228--14028565 Score: 505
Period size: 60 Copynumber: 5.7 Consensus size: 58
14028218 TTATGCAGGA
*
14028228 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTTGAAAATTTATTTTTAAGG
14028288 AAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTTGAAAATTTATTTTTAAGG
* * *
14028348 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAA-ATTTATTTTTAAGG
* **
14028407 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGG
** * *
14028465 AAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTGAAAATTTTGATCTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAA-TTT-ATTTTTAAGG
14028525 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTTT
14028566 TGATTTTTAT
Statistics
Matches: 257, Mismatches: 17, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
58 65 0.25
59 56 0.22
60 131 0.51
61 5 0.02
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAAGG
Found at i:14028527 original size:177 final size:179
Alignment explanation
Indices: 14028228--14028564 Score: 565
Period size: 177 Copynumber: 1.9 Consensus size: 179
14028218 TTATGCAGGA
*
14028228 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TCATTTTTTTGAAAATTTATTTTTAAGGAAAAT
* * *
14028293 TGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAATTGATA
65 TGATACTTTCAACTTTTCCCCAAAAAATGATTTTTTTGAAAATTTATCTTCAAGGAAAATTGATA
14028358 CTTTCAACTTTTCCCCAAAAATATT-TTTTGGAAACTTTTATTTTCAAGG
130 CTTTCAACTTTTCCCCAAAAATATTCTTTTGGAAACTTTTATTTTCAAGG
*
14028407 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTGAAAATTTATTTTTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAAGGAAAATT
*
14028471 GATACTTTCAACTTTT-CCTAAAAAAT-ATTTTTTTGAAAATTTTGATCTTCAAGGAAAATTGAT
66 GATACTTTCAACTTTTCCCCAAAAAATGATTTTTTTGAAAA-TTT-ATCTTCAAGGAAAATTGAT
14028534 ACTTTCAACTTTTCCCCAAAAATATTCTTTT
129 ACTTTCAACTTTTCCCCAAAAATATTCTTTT
14028565 TTGATTTTTA
Statistics
Matches: 149, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
175 13 0.09
176 11 0.07
177 90 0.60
178 4 0.03
179 31 0.21
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (179 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAAATGATTTTTTTGAAAATTTATCTTCAAGGAAAATTGATAC
TTTCAACTTTTCCCCAAAAATATTCTTTTGGAAACTTTTATTTTCAAGG
Found at i:14028615 original size:30 final size:30
Alignment explanation
Indices: 14028581--14028637 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
14028571 TTTATTTAAA
*
14028581 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAAAAATAAAACAAAATAAAAGT
*
14028611 GAAAATAAAAAAATAAAATAAAATAAA
1 GAAAATAAAAAAATAAAACAAAATAAA
14028638 GAAAAGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (30 bp):
GAAAATAAAAAAATAAAACAAAATAAAAGT
Found at i:14028625 original size:20 final size:19
Alignment explanation
Indices: 14028577--14028670 Score: 88
Period size: 18 Copynumber: 4.9 Consensus size: 19
14028567 GATTTTTATT
*
14028577 TAAAGAAAATAAAATAATA
1 TAAAGAAAATAAAATAAAA
*
14028596 -AAACAAAATAAAAGTGAAAA
1 TAAAGAAAATAAAA-T-AAAA
14028616 TAAA-AAAATAAAATAAAA
1 TAAAGAAAATAAAATAAAA
* *
14028634 TAAAGAAAAGTAAAACCAAGA
1 TAAAGAAAA-TAAAA-TAAAA
14028655 T-AA-AAAATAAAATAAA
1 TAAAGAAAATAAAATAAA
14028671 GGTAAAAAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
17 2 0.03
18 25 0.40
19 10 0.16
20 19 0.30
21 7 0.11
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (19 bp):
TAAAGAAAATAAAATAAAA
Found at i:14028668 original size:5 final size:5
Alignment explanation
Indices: 14028582--14028637 Score: 57
Period size: 5 Copynumber: 11.6 Consensus size: 5
14028572 TTATTTAAAG
*
14028582 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT -AAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
14028630 AAAAT AAA
1 AAAAT AAA
14028638 GAAAAGTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
3 3 0.07
4 6 0.14
5 28 0.65
6 2 0.05
7 4 0.09
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:14029216 original size:19 final size:19
Alignment explanation
Indices: 14029194--14029231 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14029184 TGGCCGGAAT
14029194 TTTCATC-GAAAAATTCAAC
1 TTTCATCAG-AAAATTCAAC
*
14029213 TTTCGTCAGAAAATTCAAC
1 TTTCATCAGAAAATTCAAC
14029232 CGAAATCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (19 bp):
TTTCATCAGAAAATTCAAC
Found at i:14029623 original size:14 final size:14
Alignment explanation
Indices: 14029606--14029721 Score: 53
Period size: 14 Copynumber: 8.1 Consensus size: 14
14029596 TTATAGGATA
14029606 AATAAAAAAATAAT
1 AATAAAAAAATAAT
*
14029620 AATAATAACAGATATAT
1 AATAA-AA-AAATA-AT
* * *
14029637 AATTAGATAAATAAA
1 AA-TAAAAAAATAAT
*
14029652 AATACAAAAAT-A-
1 AATAAAAAAATAAT
*
14029664 AATAAAATAA-AA-
1 AATAAAAAAATAAT
14029676 AATAAAAAATATATATT
1 AATAAAAAA-ATA-A-T
* *
14029693 AAT-AAATAGTAAT
1 AATAAAAAAATAAT
*
14029706 AATAAATAAATAAT
1 AATAAAAAAATAAT
14029720 AA
1 AA
14029722 ATACATAGGA
Statistics
Matches: 76, Mismatches: 15, Indels: 22
0.67 0.13 0.19
Matches are distributed among these distances:
12 17 0.22
13 6 0.08
14 23 0.30
15 8 0.11
16 12 0.16
17 8 0.11
18 2 0.03
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.26
Consensus pattern (14 bp):
AATAAAAAAATAAT
Found at i:14029633 original size:28 final size:26
Alignment explanation
Indices: 14029544--14029680 Score: 66
Period size: 30 Copynumber: 5.0 Consensus size: 26
14029534 ACCTTCCAAA
*
14029544 ATAAAAATCAAATAAAAAAATAGATAATT
1 ATAAAGAT-AAATAAAAAAATA-ATAA-T
*
14029573 AGAAAAGATAAATCAAAAAAAT-AT--T
1 A-TAAAGATAAAT-AAAAAAATAATAAT
*
14029598 AT-AGGATAAATAAAAAAATAATAAT
1 ATAAAGATAAATAAAAAAATAATAAT
* *
14029623 AATAACAGATATATAATTAGATAAATAAAAAT
1 -ATAA-AGATAAATAA--A-A-AAATAATAAT
* * *
14029655 ACAAAAATAAATAAAATAAAAAATAA
1 ATAAAGATAAATAAAA-AAATAATAA
14029681 AAAATATATA
Statistics
Matches: 84, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
22 8 0.10
23 10 0.12
25 3 0.04
26 2 0.02
27 10 0.12
28 11 0.13
29 5 0.06
30 22 0.26
31 4 0.05
32 9 0.11
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (26 bp):
ATAAAGATAAATAAAAAAATAATAAT
Found at i:14029666 original size:4 final size:4
Alignment explanation
Indices: 14029643--14029724 Score: 52
Period size: 4 Copynumber: 20.8 Consensus size: 4
14029633 ATATAATTAG
14029643 ATAA AT-A A-AA ATACA A-AA ATAA ATAAA ATAA A-AA ATAA A-AA ATATA
1 ATAA ATAA ATAA ATA-A ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATA-A
*
14029689 TATTA ATAA ATAGTA AT-A ATAA ATAA AT-A ATAA ATA
1 -ATAA ATAA ATA--A ATAA ATAA ATAA ATAA ATAA ATA
14029725 CATAGGATAT
Statistics
Matches: 63, Mismatches: 2, Indels: 26
0.69 0.02 0.29
Matches are distributed among these distances:
3 18 0.29
4 32 0.51
5 8 0.13
6 5 0.08
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:14029666 original size:12 final size:11
Alignment explanation
Indices: 14029651--14029724 Score: 51
Period size: 11 Copynumber: 6.5 Consensus size: 11
14029641 AGATAAATAA
14029651 AAATACAAAAAT
1 AAATA-AAAAAT
*
14029663 AAATAAAATAAA
1 AAATAAAA-AAT
14029675 AAATAAAAAAT
1 AAATAAAAAAT
* **
14029686 ATAT-ATTAAT
1 AAATAAAAAAT
*
14029696 AAATAGTAATAAT
1 AAATA--AAAAAT
*
14029709 AAATAAATAAT
1 AAATAAAAAAT
14029720 AAATA
1 AAATA
14029725 CATAGGATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
10 7 0.14
11 19 0.37
12 15 0.29
13 10 0.20
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.26
Consensus pattern (11 bp):
AAATAAAAAAT
Found at i:14029677 original size:7 final size:7
Alignment explanation
Indices: 14029645--14029686 Score: 50
Period size: 7 Copynumber: 5.7 Consensus size: 7
14029635 ATAATTAGAT
14029645 AAAT-AA
1 AAATAAA
14029651 AAATACAA
1 AAATA-AA
14029659 AAATAAATA
1 AAAT-AA-A
14029668 AAATAAA
1 AAATAAA
14029675 AAATAAA
1 AAATAAA
14029682 AAATA
1 AAATA
14029687 TATATTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 4 0.12
7 13 0.41
8 9 0.28
9 6 0.19
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (7 bp):
AAATAAA
Found at i:14029775 original size:8 final size:8
Alignment explanation
Indices: 14029762--14029800 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
14029752 TAAAATATAG
*
14029762 AATAAAAT
1 AATAAAAA
14029770 AATAAAAA
1 AATAAAAA
14029778 AAT-AAAA
1 AATAAAAA
14029785 AATAACAAA
1 AATAA-AAA
14029794 AATAAAA
1 AATAAAA
14029801 TTGGACTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 8 0.29
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:14029783 original size:16 final size:17
Alignment explanation
Indices: 14029762--14029801 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
14029752 TAAAATATAG
14029762 AATAAAATAATAA-AAA
1 AATAAAATAATAACAAA
14029778 AATAAAA-AATAACAAA
1 AATAAAATAATAACAAA
14029794 AATAAAAT
1 AATAAAAT
14029802 TGGACTTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAATAATAACAAA
Found at i:14029975 original size:6 final size:6
Alignment explanation
Indices: 14029966--14030013 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
14029956 TTTTTTATAT
* *
14029966 TTTTTG TTTTTTT TTGTTTG CTTTTG TTTTTG TTTTTG TTTTT- TTTTT
1 TTTTTG -TTTTTG TT-TTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
14030014 TAACCAAAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
5 5 0.14
6 22 0.61
7 9 0.25
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:14029978 original size:10 final size:10
Alignment explanation
Indices: 14029965--14030012 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
14029955 TTTTTTTATA
14029965 TTTTTTGTTT
1 TTTTTTGTTT
14029975 TTTTTTGTTT
1 TTTTTTGTTT
**
14029985 GCTTTTGTTTT
1 TTTTTTG-TTT
14029996 TGTTTTTGTTT
1 T-TTTTTGTTT
14030007 TTTTTT
1 TTTTTT
14030013 TTAACCAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 20 0.62
11 7 0.22
12 5 0.16
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.85
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:14030081 original size:42 final size:42
Alignment explanation
Indices: 14030022--14030317 Score: 430
Period size: 42 Copynumber: 7.1 Consensus size: 42
14030012 TTTAACCAAA
* * * *
14030022 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
14030064 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
14030106 GCTCCTCTAAACAGAACAGAGGCACCACGAC-TTTG-AAAGTAAATT
1 GCTCCTCT----A-AACAGAGGCACCACGACTTTTGAAAAGTAAATT
* *
14030151 GCTTCTCTAAACAGAGGCACCATGACTTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
14030192 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
14030234 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
14030276 GCT-C-CT---CAGAGGCACCACGAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
14030312 GCTCCT
1 GCTCCT
14030318 TGACAATCAT
Statistics
Matches: 237, Mismatches: 8, Indels: 22
0.89 0.03 0.08
Matches are distributed among these distances:
36 18 0.08
37 16 0.07
40 18 0.08
41 45 0.19
42 101 0.43
45 17 0.07
46 5 0.02
47 17 0.07
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
Found at i:14031352 original size:16 final size:16
Alignment explanation
Indices: 14031333--14031422 Score: 85
Period size: 16 Copynumber: 5.4 Consensus size: 16
14031323 CCTTTTTCAC
14031333 TTTTTCTTTTTTCATT
1 TTTTTCTTTTTTCATT
* *
14031349 TTTTTATTTTTTTA-T
1 TTTTTCTTTTTTCATT
14031364 TTTTTCATTTTTTCATT
1 TTTTTC-TTTTTTCATT
*
14031381 TTTTCTCTTTTTTTATT
1 TTTT-TCTTTTTTCATT
14031398 TCATCATTT-TTTTTTCATT
1 T--T--TTTCTTTTTTCATT
14031417 TTTTTC
1 TTTTTC
14031423 AAGCATAGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
15 9 0.15
16 19 0.32
17 16 0.27
18 2 0.03
19 11 0.18
20 1 0.02
21 2 0.03
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTCTTTTTTCATT
Found at i:14031360 original size:24 final size:24
Alignment explanation
Indices: 14031325--14031410 Score: 102
Period size: 24 Copynumber: 3.6 Consensus size: 24
14031315 TGAGTCCTCC
*
14031325 TTTTTCA-CTTTTTCTTTTTTCAT
1 TTTTTCATTTTTTTCTTTTTTCAT
* *
14031348 TTTTTTATTTTTTTATTTTTTCAT
1 TTTTTCATTTTTTTCTTTTTTCAT
*
14031372 TTTTTCATTTTTTCTCTTTTTTTAT
1 TTTTTCATTTTTT-TCTTTTTTCAT
**
14031397 TTCATCATTTTTTT
1 TTTTTCATTTTTTT
14031411 TTCATTTTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 6 0.11
24 27 0.51
25 20 0.38
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTCATTTTTTTCTTTTTTCAT
Found at i:14031420 original size:8 final size:8
Alignment explanation
Indices: 14031325--14031409 Score: 91
Period size: 8 Copynumber: 10.6 Consensus size: 8
14031315 TGAGTCCTCC
*
14031325 TTTTTCAC
1 TTTTTCAT
14031333 TTTTTC-T
1 TTTTTCAT
14031340 TTTTTCAT
1 TTTTTCAT
*
14031348 TTTTTTAT
1 TTTTTCAT
*
14031356 TTTTTTAT
1 TTTTTCAT
14031364 TTTTTCAT
1 TTTTTCAT
14031372 TTTTTCAT
1 TTTTTCAT
*
14031380 TTTTTCTCT
1 TTTTTC-AT
*
14031389 TTTTTTAT
1 TTTTTCAT
**
14031397 TTCATCAT
1 TTTTTCAT
14031405 TTTTT
1 TTTTT
14031410 TTTCATTTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
7 6 0.09
8 52 0.81
9 6 0.09
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTCAT
Found at i:14033902 original size:26 final size:26
Alignment explanation
Indices: 14033873--14033925 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14033863 CCGATCAAAT
* *
14033873 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATAAACTCCATATG
14033899 CTTAGACATGGAATAAACTCCATATG
1 CTTAGACATGGAATAAACTCCATATG
14033925 C
1 C
14033926 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:14034198 original size:158 final size:158
Alignment explanation
Indices: 14033914--14034392 Score: 402
Period size: 158 Copynumber: 3.0 Consensus size: 158
14033904 ACATGGAATA
* * * ** * * ** * * *
14033914 AACTCCATATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAACCAACCG-AGAGGCAA
1 AACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAACCGACCGAAAAGGCAG
* * * * *
14033978 AATGCACAAG-TCGGGGATCGACCTGGTCCCACCCTGCGTGCTGTCGATCCTACTACTGCAACCC
66 AATGCGCAAGCT-GAGGATCGACCCGATCCC-CCCTGCGTGCTGTCGATCCTGCTACTGCAACCC
14034042 TCACTCCAGTCT-GATCTTAGACTAGAAATG
129 TCA-TCCAGTCTAGATCTTAGACTAGAAATG
** * * * * * *
14034072 AACTCTGTATGCCTATGTTAACCCATGAAACAAGTGTGCAGGTGC-CAAACCGACCGTAGAGGCA
1 AACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTC-AACCGACCGAAAAGGCA
* * * * **
14034136 TAATGTGCAAGCTGAGGATCGACCCGATCCCCCTCTGCGTGCCGTCG-TCCCGCTACCACAACCC
65 GAATGCGCAAGCTGAGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTACTGCAACCC
* * ** *
14034200 TCGATCC-GACTGGGGCTTAGAC-ATGGAATG
129 TC-ATCCAGTCTAGATCTTAGACTA-GAAATG
** * * *
14034230 AACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGATCGAAAAGGCAG
1 AACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAACCGACCGAAAAGGCAG
* * *
14034295 AATGCGTAAGCTGGGGATCGACCCGAT-CCCCCTGCGTGCTGCCGATCCTGCTACTGCAACCCTC
66 AATGCGCAAGCTGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTC
*
14034359 GGTCCAGT-TAGATCTTAGACT-GAGAATG
131 -ATCCAGTCTAGATCTTAGACTAGA-AATG
14034387 AACTCC
1 AACTCC
14034393 GTACGTTTAG
Statistics
Matches: 255, Mismatches: 54, Indels: 25
0.76 0.16 0.07
Matches are distributed among these distances:
156 12 0.05
157 48 0.19
158 150 0.59
159 44 0.17
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (158 bp):
AACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAACCGACCGAAAAGGCAG
AATGCGCAAGCTGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTC
ATCCAGTCTAGATCTTAGACTAGAAATG
Found at i:14034539 original size:183 final size:183
Alignment explanation
Indices: 14034216--14034573 Score: 501
Period size: 183 Copynumber: 2.0 Consensus size: 183
14034206 CGACTGGGGC
** *
14034216 TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGCC
* *
14034281 GATCGAAAAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCTGCGTGCTGCCGATCCTGC
66 GATCGAAAAGGCAGAATGCATAAGCTGGGGATCGACCCGATCCCCCTGCGTGCTACCGATCCTGC
* *
14034346 TACTGCAACCCTCGGTCC-AGT-TAGATCTTAG-ACTGAGAATGAACTCCGTACGT
131 TACCGCAACCCTCGATCCGA-TCT-GATCTTAGAACTG-GAATGAACTCCGTACGT
** *
14034399 TTAGAC-TGGAGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACATGTGGGTGCTCAGC
1 TTAGACATGGA-ATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGC
* * * *
14034463 CGATCGGAGAGGCAGAATGCATAAGCTGGGGATCGGCCC-AGTCCCCCTGCGTGCTATCGATCCT
65 CGATCGAAAAGGCAGAATGCATAAGCTGGGGATCGACCCGA-TCCCCCTGCGTGCTACCGATCCT
*
14034527 GCTGCCGCAACCCTCGATCCGATCTGATCTTAGAACTGGAATGAACT
129 GCTACCGCAACCCTCGATCCGATCTGATCTTAGAACTGGAATGAACT
14034574 TTGTATGCTT
Statistics
Matches: 155, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
182 5 0.03
183 144 0.93
184 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (183 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAACATGCGGGTGCTCAGCC
GATCGAAAAGGCAGAATGCATAAGCTGGGGATCGACCCGATCCCCCTGCGTGCTACCGATCCTGC
TACCGCAACCCTCGATCCGATCTGATCTTAGAACTGGAATGAACTCCGTACGT
Found at i:14034894 original size:26 final size:26
Alignment explanation
Indices: 14034865--14034917 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14034855 CCGGTCTGAT
14034865 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14034891 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14034917 C
1 C
14034918 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14035624 original size:26 final size:26
Alignment explanation
Indices: 14035586--14035638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14035576 GGCTCAAACT
*
14035586 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
14035612 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14035638 C
1 C
14035639 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14036834 original size:26 final size:27
Alignment explanation
Indices: 14036796--14036849 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
14036786 GGCTCAAACT
14036796 CTTAGACTGGGAATGAACTCC-GTATG
1 CTTAGACTGGGAATGAACTCCGGTATG
14036822 CTTAGACAT-GGAATGAACTCCGGTATG
1 CTTAGAC-TGGGAATGAACTCCGGTATG
14036849 C
1 C
14036850 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGGTATG
Found at i:14037181 original size:26 final size:26
Alignment explanation
Indices: 14037140--14037192 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14037130 CCAGTTCGAT
14037140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14037166 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14037192 C
1 C
14037193 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14037401 original size:26 final size:26
Alignment explanation
Indices: 14037351--14037402 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14037341 CAGTCTGATT
* *
14037351 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
14037377 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
14037403 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14037902 original size:26 final size:26
Alignment explanation
Indices: 14037851--14037903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14037841 CCAATCCGAT
*
14037851 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14037877 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14037903 C
1 C
14037904 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14038259 original size:26 final size:26
Alignment explanation
Indices: 14038230--14038280 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14038220 CAGTCTAATC
14038230 TTAGAC-TGGGAATGAAATCCATATGA
1 TTAGACAT-GGAATGAAATCCATATGA
* *
14038256 TTAGACATGGAATGAACTCCCTATG
1 TTAGACATGGAATGAAATCCATATG
14038281 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAAATCCATATGA
Found at i:14038919 original size:26 final size:26
Alignment explanation
Indices: 14038883--14038935 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14038873 CCAGTTCGAT
14038883 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14038909 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14038935 C
1 C
14038936 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14039937 original size:158 final size:155
Alignment explanation
Indices: 14039471--14039952 Score: 429
Period size: 158 Copynumber: 3.1 Consensus size: 155
14039461 TTAGACATGA
* * * ** *
14039471 AATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGTGTGCGGGCGCTCAGCTTGTCGGAGAGG
1 AATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGG-GCTCAACCAGTCAGAGAGG
** * * * * *
14039536 CAGAATGCATAAGCTGAGGA-CTGACCCAGTGT-CCCC-TGCGTGCTGTTGATCCTGCTGTCATA
65 CAGAATGCGCAAGCTGGGGATC-G-GCTAG-GTCCCCCTTGCGTGCTGTCGATCCTGCTGTCACA
*
14039598 ACCCTCGATCCGATCCGATCTTAGACTGGG
127 ACCCTCGGTCC-ATCCGATCTTAGACTGGG
* * ** *
14039628 AATGAACTCCGTGTGCCTAAGTCAACCCATGAAATGAGCGTGC-GGGCTTTGAGCAGTCAGAGAG
1 AATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGGC-TCAACCAGTCAGAGAG
* * * * * * * *
14039692 GCATAATGTGCAAACTGGGGATTGGCTCGGTCCCCCTCTGTGTGCTGTC-AGTCCCGCTGCCACA
64 GCAGAATGCGCAAGCTGGGGATCGGCTAGGTCCCCCT-TGCGTGCTGTCGA-TCCTGCTGTCACA
* * * **
14039756 ACCCTCAGTCCAGCTGGGGCTTAGACAT-GG
127 ACCCTCGGTCCATC-CGATCTTAGAC-TGGG
* *
14039786 AATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGTGCTCAACCGGTCAGAGA
1 AATGAACTCCGTATGCCTAAG-CAACCCATGAAACGA-GCGTGCGGG-GCTCAACCAGTCAGAGA
* * * *
14039850 GGCAGAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCTTGCGTGCTGTCGATCCTACTGTCGCAA
63 GGCAGAATGCGCAAGCTGGGGATCGGCTAGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCACAA
*
14039915 CCCTCGGTCCAATCCAATCTTAGACTGGG
128 CCCTCGGTCC-ATCCGATCTTAGACTGGG
14039944 AATGAACTC
1 AATGAACTC
14039953 TTTATGCTTA
Statistics
Matches: 253, Mismatches: 57, Indels: 29
0.75 0.17 0.09
Matches are distributed among these distances:
155 2 0.01
156 8 0.03
157 52 0.21
158 140 0.55
159 49 0.19
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (155 bp):
AATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGGCTCAACCAGTCAGAGAGGC
AGAATGCGCAAGCTGGGGATCGGCTAGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCACAACCC
TCGGTCCATCCGATCTTAGACTGGG
Found at i:14041051 original size:26 final size:26
Alignment explanation
Indices: 14041008--14041059 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14040998 TGGTTTGATT
* *
14041008 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCATATGC
*
14041034 TTAGACTGGGGATAAACTCCATATGC
1 TTAGACTGGGAATAAACTCCATATGC
14041060 CCCCCTGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGC
Found at i:14041653 original size:26 final size:26
Alignment explanation
Indices: 14041624--14041676 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14041614 CCGGTTCGAT
*
14041624 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATAAACTCCGTATG
14041650 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
14041676 C
1 C
14041677 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:14042056 original size:159 final size:156
Alignment explanation
Indices: 14041649--14042095 Score: 416
Period size: 159 Copynumber: 2.8 Consensus size: 156
14041639 AACTCCGTAT
* * * *
14041649 GCTTAGACATGGAATAAACTCCGTATGCGTAAGCCAACCCACGAAA-TGAGCGTACGGGCATTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTACGGGCACTCA
* * * * * * *
14041713 GCCGGTCGGAAAGGTAGAATGCGTAAGCTAGGGACCGACCCGGTCCACCCTGTGTGCTGTCGATC
65 GCTGG-CCGAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCC-CCCTCTGTGCTGTCGATC
* * * * *
14041778 CTGCTACCGCAACCGTTGGTCCGGTCTAA
128 CCGCTACCACAACCCTCGGTCCGGACTAA
* * * * * * *
14041807 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAACGGGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCA
* * * * * *
14041871 ACTAGCCGAAAAGGCATAAT-CAGCAAGCCGGGGATCTACCCGGTCCCCCTCTGCATGCTGTCGG
65 GCTGGCCG-AAAGGCAGAATGC-GCAAGCTGGGGATCGACCCGGTCCCCCTCTG--TGCTGTCGA
* **
14041935 TCCCGCTGCCACAACCCTCGGTCC-GACTGGG
126 TCCCGCTACCACAACCCTCGGTCCGGACT-AA
* * *
14041966 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATACGGGAACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAG
* * * *
14042031 CTGGCCGAAGAGGCAGAATGCGCAAGCTGGGTATCGGCCCGGTCCCCCCCGTGTTCTGTCGATCC
66 CTGGCCGAA-AGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTC-TGTGCTGTCGATCC
14042096 TACTGTTGGT
Statistics
Matches: 227, Mismatches: 51, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 95 0.42
159 118 0.52
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAG
CTGGCCGAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTGTGCTGTCGATCCCG
CTACCACAACCCTCGGTCCGGACTAA
Found at i:14042176 original size:26 final size:25
Alignment explanation
Indices: 14042137--14042188 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14042127 CCGATCTAAT
14042137 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
14042162 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
14042188 C
1 C
14042189 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:14042466 original size:157 final size:157
Alignment explanation
Indices: 14042161--14042537 Score: 408
Period size: 157 Copynumber: 2.4 Consensus size: 157
14042151 AACTCCATAT
* * * *
14042161 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTAAGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAG
* * *
14042226 CCAGTCGGAGACATAAAATGCGTAAGCTGGGGATCGGCCCACCCTCCCCTGTGTGCTATCGATCC
66 CCAGTCGGAGACAT-AAATGCGTAAGCCGGGGATCGACCCACCCTCCCCTGCGTGCTATCGATCC
* *
14042291 TACTATCGCAACCTTCGGTCCGGTCT-GA
130 TACTACCACAACCTTCGGTCCGG-CTGGA
* * ** * *
14042319 TCTTAGAC-GGGAATGAACTCCGTACACCTAAGTCAA-CCACAAAACGAGCGTACGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAG
* * * *
14042382 CCGGTCAGAGAGGCAT-AATGCGTAAGCCGGGGATCGACCCGATCCC-CCTCTGCGTGCTGTC-A
66 CCAGTC-G-GAGACATAAATGCGTAAGCCGGGGATCGACCC-A-CCCTCCCCTGCGTGCTATCGA
* * *
14042444 GTCCTGCTGCCACAA-CTCTCGGTCCGGCTGGG
127 -TCCTACTACCACAACCT-TCGGTCCGGCTGGA
* * *
14042476 GCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACT
14042538 CAGTCAACCG
Statistics
Matches: 179, Mismatches: 31, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
156 54 0.30
157 64 0.36
158 39 0.22
159 22 0.12
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTGAG
CCAGTCGGAGACATAAATGCGTAAGCCGGGGATCGACCCACCCTCCCCTGCGTGCTATCGATCCT
ACTACCACAACCTTCGGTCCGGCTGGA
Found at i:14042650 original size:26 final size:26
Alignment explanation
Indices: 14042619--14042674 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14042609 CCGGTCTGAT
*
14042619 CTTAGACTAGGAATGAACTCCATCTG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
14042645 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14042671 CTTA
1 CTTA
14042675 AATCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14043357 original size:26 final size:26
Alignment explanation
Indices: 14043319--14043371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14043309 GGCTCAAAAT
*
14043319 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14043345 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14043371 C
1 C
14043372 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14043666 original size:158 final size:158
Alignment explanation
Indices: 14043346--14043687 Score: 343
Period size: 158 Copynumber: 2.2 Consensus size: 158
14043336 CTTCGTATGC
* *
14043346 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCTACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCTACC
* * * *
14043411 GGCCAGAAAGGTAGAATGCGCAAGCTAGGGATCGACTCGGTCCCCTTCTGCGTGCTGCCGGTCCC
66 GACCAGAAAGGCAGAATGCGCAAGCTAGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGATCCC
* * * *
14043476 ACTGCCACAACCCTCAGTCTGGCTGGGC
131 ACTGCCACAACCATCAGTCAGGCTGAGA
* * * *
14043504 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGAGTGCGGGCGCTC-AGT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCTA-C
* * * * * *
14043568 CGACCGGAGAGGCAGAATGCGCAAGC-CGGAGATCGGC-CTGGTCCCCCT-TGTGTGTTGCCGAT
65 CGACCAGAAAGGCAGAATGCGCAAGCTAGG-GATCGACTC-GGTCCCCCTCTGCGTGCTGCCGAT
** * ** ** *
14043630 CCTGCTGCCGCAACCATTGGTCCAGTTTGATA
128 CCCACTGCCACAACCATCAGT-CAGGCTGAGA
*
14043662 TTAGAC-TGGGAAGGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
14043688 TTAGACTGAG
Statistics
Matches: 149, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 31 0.21
158 118 0.79
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCTACC
GACCAGAAAGGCAGAATGCGCAAGCTAGGGATCGACTCGGTCCCCCTCTGCGTGCTGCCGATCCC
ACTGCCACAACCATCAGTCAGGCTGAGA
Found at i:14043704 original size:26 final size:26
Alignment explanation
Indices: 14043662--14043713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14043652 CAGTTTGATA
14043662 TTAGACTGGGAAGGAACTCCGTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
*
14043688 TTAGACTGAGG-ATGAACTCCGTATGC
1 TTAGACTG-GGAAGGAACTCCGTATGC
14043714 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAGGAACTCCGTATGC
Found at i:14043816 original size:184 final size:185
Alignment explanation
Indices: 14043502--14044012 Score: 503
Period size: 196 Copynumber: 2.7 Consensus size: 185
14043492 GTCTGGCTGG
* * * * * *
14043502 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * * *
14043567 TCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCTGGTCCCCCTTGTGTGTTGCCGATCC
66 CCG-GCAGAAAGGTAGAATGCGCAAGCCGG-GATCGGCCCGATCCCCCCTGTGTGCTGTCGATCC
* *
14043632 TGCT-G-C-CGCAA-CCATTGGTCCAGTTTGATATTAGACTGGGAAGGAACTCCGTAT
129 TGCTGGCCTCGCAAGCC-TCGGTCCAGTCTGATATTAGACTGGGAAGGAACTCCGTAT
* * *
14043686 GCTTAGAC-TGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* *
14043750 GCCGGTCAGAAAGGTAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATC
65 GCCGG-CAGAAAGGTAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCCTGTGTGCTGTCGAT-
* * * *
14043815 CTGCTGCTGGTCCTACTGTCGCAAGCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGT
127 C--CTGCTGG--C--C--TCGCAAGCCTCGGTCCAGTCTGATATTAGACTGGGAAGGAACTCCGT
14043880 AT
184 AT
* * *
14043882 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATTCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
14043947 CCGGCCGAAGAGGTAGAATGCACAAGCCGAGGATTGGCCC-AGTCGCCCCTGCGTGCTGTCGATC
66 CCGGCAGAA-AGGTAGAATGCGCAAGCCG-GGATCGGCCCGA-TCCCCCCTGTGTGCTGTCGATC
14044011 CT
128 CT
14044013 AAGTCAACCC
Statistics
Matches: 268, Mismatches: 39, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
183 2 0.01
184 101 0.38
185 3 0.01
187 5 0.02
188 1 0.00
193 3 0.01
195 7 0.03
196 142 0.53
197 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCAGAAAGGTAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCTG
CTGGCCTCGCAAGCCTCGGTCCAGTCTGATATTAGACTGGGAAGGAACTCCGTAT
Found at i:14043908 original size:26 final size:26
Alignment explanation
Indices: 14043857--14043909 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14043847 CCGGTCTGAT
* **
14043857 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
14043883 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
14043909 C
1 C
14043910 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:14044005 original size:196 final size:196
Alignment explanation
Indices: 14043648--14044012 Score: 504
Period size: 196 Copynumber: 1.9 Consensus size: 196
14043638 CGCAACCATT
* * * *
14043648 GGTCCAGTTTGATATTAGACTGGGAAGGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATG
1 GGTCCAGTCTGATATTAGACTGGGAAGGAACTCCGTATGCTTAGACTGAGAATAAACTCCATATG
* * **
14043713 CCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTCAGAAAGGTAGAATGCGTAAGC
66 CCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGTCAGAAAGGTAGAATGCACAAGC
*
14043778 CAGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCTGGTCCTACTGTCGCAAGCCT
131 CAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTGTCGCAAGCCT
14043843 C
196 C
* * * *
14043844 GGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATG-GAATAAACTCCATAT
1 GGTCCAGTCTGATATTAGACTGGGAAGGAACTCCGTATGCTTAGAC-TGAGAATAAACTCCATAT
* *
14043908 GCCTAAGCCAACCCACGAAACGAGCATTCGGGTGCTCAGCCGG-CCGAAGAGGTAGAATGCACAA
65 GCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGTCAGAA-AGGTAGAATGCACAA
* * *
14043972 GCC-GAGGATTGGCCC-AGTCGCCCCTGCGTGCTGTCGATCCT
129 GCCAG-GGATCGACCCGA-TCCCCCCTGCGTGCTGTCGATCCT
14044013 AAGTCAACCC
Statistics
Matches: 147, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
195 6 0.04
196 139 0.95
197 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (196 bp):
GGTCCAGTCTGATATTAGACTGGGAAGGAACTCCGTATGCTTAGACTGAGAATAAACTCCATATG
CCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCGGTCAGAAAGGTAGAATGCACAAGC
CAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTGTCGCAAGCCT
C
Found at i:14045514 original size:158 final size:158
Alignment explanation
Indices: 14045012--14045514 Score: 514
Period size: 159 Copynumber: 3.2 Consensus size: 158
14045002 GGCTCAAACT
* *
14045012 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
* * *
14045076 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACTGGCTCGGTCCCCCTCTGCCTGCTA-CTGGT
65 TCGACCGGAGAGGCAAAATGCGCAAGTCGGGGACTGGCCCGGTCCCCCTCTGCATGCTATC-GGT
* * *
14045140 CCCACTGCGACAACCCTCGGTCTGACTGGGG
129 CCCGCTGCCACAACCCTC-GTCCGACTGGGG
* * * *
14045171 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAATGGGCGTGCGGGCACTGAG-
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGT
* ** * * * * *
14045235 CTAACCGGAGAGGCGTAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCTTTGCATGCTGTCGGTC
66 C-GACCGGAGAGGCAAAATGCGCAAGTCGGGGACTGGCCCGGTCCCCCTCTGCATGCTATCGGTC
14045300 CCGCTGCCACAACCCTCGATCC-AGCTGGGG
130 CCGCTGCCACAACCCTCG-TCCGA-CTGGGG
* * * * * **
14045330 CTTAGACATCGAATGAATTCCCTATGCCTAAGCTAACCCACGAAACGGGTATGGGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGT
** * * * * * * *
14045395 CGGTCAGAGAGGCAAAATACGTAAGTCGGGGACTGACCCGGT-CCCATCAGCATGCTATCGATCC
66 CGACCGGAGAGGCAAAATGCGCAAGTCGGGGACTGGCCCGGTCCCCCTCTGCATGCTATCGGTCC
* * * **
14045459 TGCTGCCACAACCCTCAGTCCGATTCGAT
131 CGCTGCCACAACCCTC-GTCCGACTGGGG
*
14045488 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCCTATGC
14045515 TTAGACTAGG
Statistics
Matches: 280, Mismatches: 55, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 62 0.22
159 214 0.76
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGT
CGACCGGAGAGGCAAAATGCGCAAGTCGGGGACTGGCCCGGTCCCCCTCTGCATGCTATCGGTCC
CGCTGCCACAACCCTCGTCCGACTGGGG
Found at i:14045517 original size:26 final size:26
Alignment explanation
Indices: 14045488--14045540 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14045478 CCGATTCGAT
14045488 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14045514 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14045540 C
1 C
14045541 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14046529 original size:26 final size:26
Alignment explanation
Indices: 14046480--14046531 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14046470 CGATCCGATG
**
14046480 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTAGGTATGC
14046506 TTAGACAT-GGAATGAACTAGGTATGC
1 TTAGAC-TGGGAATGAACTAGGTATGC
14046532 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTAGGTATGC
Found at i:14046796 original size:159 final size:157
Alignment explanation
Indices: 14046505--14047007 Score: 446
Period size: 159 Copynumber: 3.2 Consensus size: 157
14046495 ACTCTGTATG
** * * *
14046505 CTTAGAC-ATGGAATGAACTAGGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAA
1 CTTAGACTA-GGAATGAACTTCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
14046569 CCG-GTCGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCTC-AGTCTCCCTCTGCATGCTGTC-G
64 CCGACT-GGAGAGGCAGAATGTGCAAGTCG-GGATCGGCTCGA-TCCCCCTCTGCGTGCTG-CAG
* *
14046631 AACTTGCTGTCATAACCCTCGGTCCGGTTTGAT
125 ATCTTGCTGTCATAACCCTCGGTCCGGTTCGAT
* * * *
14046664 CTTAGACTAGGAATTAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTTCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
14046729 CGACTGGAGAGGCATAATGTGCAAGTCAGGGATCAGCTCGATCCCCCTCTACGTGCTGCCAG-TC
65 CGACTGGAGAGGCAGAATGTGCAAGTC-GGGATCGGCTCGATCCCCCTCTGCGTGCTG-CAGATC
* * * * * * * **
14046793 TTGCTGCCACAACCTTCAGTTCGGCTGGGG
128 TTGCTGTCATAACCCTCGGTCCGGTTCGAT
* * * * * *
14046823 CTTAGAC-ATGGAATGAACTCCCTATGCCTACGCTAACCCATAAAATGGGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTTCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14046887 CCGACTGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCTC-CTGCGTGTTG-ATGAT
64 CCGACTGGAGAGGCAGAATGTGCAAG-TCGGGATCGGCTCGATCCCCCTCTGCGTGCTGCA-GAT
* * *
14046950 CCTGCTGTCGTAACCCTCGGTCTGGTTCGAT
127 CTTGCTGTCATAACCCTCGGTCCGGTTCGAT
* *
14046981 CTTAGATTGGGAATGAACTTCGTATGC
1 CTTAGACTAGGAATGAACTTCGTATGC
14047008 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 61, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 52 0.19
159 212 0.78
160 6 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTTCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GACTGGAGAGGCAGAATGTGCAAGTCGGGATCGGCTCGATCCCCCTCTGCGTGCTGCAGATCTTG
CTGTCATAACCCTCGGTCCGGTTCGAT
Found at i:14047010 original size:26 final size:26
Alignment explanation
Indices: 14046981--14047033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14046971 CTGGTTCGAT
*
14046981 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14047007 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14047033 C
1 C
14047034 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14048619 original size:26 final size:26
Alignment explanation
Indices: 14048569--14048619 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14048559 TCAGTCCGAT
**
14048569 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14048595 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
14048620 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14048782 original size:26 final size:26
Alignment explanation
Indices: 14048753--14048805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14048743 CCGGTCTGAT
14048753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14048779 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14048805 C
1 C
14048806 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14049125 original size:26 final size:26
Alignment explanation
Indices: 14049096--14049146 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14049086 CTGATTTGAT
14049096 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14049122 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
14049147 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14049295 original size:539 final size:532
Alignment explanation
Indices: 14048372--14049349 Score: 1213
Period size: 539 Copynumber: 1.8 Consensus size: 532
14048362 GCCAGTCCTG
* * * * *
14048372 CTGCCACAACCCGCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACC
1 CTGCCACAACCCGCAGTCCAGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACA
* * *
14048437 CAGGAAAGGAGCTAGCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCC
66 CACGAAAGGAGCTAGCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCC
* * *
14048502 CGATCCCCCTTGTGTGCTGTCGATCCTGCTGTTGGTCCTACGATTGCAACACTCCGTTCAGTCCG
131 CGATCCCCCCTGCGTGCTGCCGATCCTGC--TTGG-CC-AC---TGCAACACTCCGTTCAGTCCG
*
14048567 ATCTTAGACTGGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAC
189 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAC
* * * **
14048632 CCACGAAATGAGCGTGCAGGCGCTCAGCTGGCCGGAGAGCCAGAATGCGTAAGCCAAGGAACAGT
254 CCACGAAATGAGCGTGCAGGCACTCAGCTAGCCAGAGAGCCAGAATGCACAAGCCAAGGAACAGT
* * *
14048697 TCGGTCCCCCCTGTGTGTTATCAATCTTGCTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTG
319 TCGGTCCCCCCTGCGTGCTATCAATCTTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTG
* * *
14048762 GGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
384 GGAATGAACTCCATATGCTTACACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
14048826 AGTGTGCGGGTGCTGAGCCGACTGAAGCTGTATAATGCCCAAGCTAGGGATCGGCCCGGTCCCCC
448 AGTGTGCGGGTGCTGAGCCGACTGAAGCTGTATAATGCCCAAGCTAGGGATCGGCCCGGTCCCCC
14048891 TCTATGTGCTGTCGGTCCCA
513 TCTATGTGCTGTCGGTCCCA
*** *
14048911 CTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACA
1 CTGCCACAACCCGCAGTCCAGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACA
**
14048976 CACGAAACGG-GC-ATGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGG
66 CACGAAA-GGAGCTA-GCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGG
* * * **
14049039 CCCGATCCCCCCTGCGTGCTGCCGATCCTGC-T-G-C-C-GCAACCCT-CGGTCTGATTTGATCT
129 CCCGATCCCCCCTGCGTGCTGCCGATCCTGCTTGGCCACTGCAACACTCCGTTCAG-TCCGATCT
* * *
14049098 TAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCTGTATACCTAAGTCAACCCA
193 TAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCA
* * * * * * *
14049162 TGAAATGAGCGTGCGGGCACTCAGTTAGCCAGAGAGGCAGAATGCACATGCCGAGGATCAG-TCT
257 CGAAATGAGCGTGCAGGCACTCAGCTAGCCAGAGAGCCAGAATGCACAAGCCAAGGAACAGTTC-
* * * * *
14049226 GGTCCCTCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTACCGCAAGCCTCGGTCTGGTCCGA
321 GGTCCCCCCTGCGTGCTATC-A--AT-CT--T-G--CTG-T--CGCAACCCTCAGTCCGGTCCGA
14049291 TCTTAGACTGGGAATGAACTCCATATGCTTACACATGGAATGAACTCCGTATGCCTAAG
374 TCTTAGACTGGGAATGAACTCCATATGCTTACACATGGAATGAACTCCGTATGCCTAAG
14049350 CCCTGCCACG
Statistics
Matches: 372, Mismatches: 49, Indels: 36
0.81 0.11 0.08
Matches are distributed among these distances:
526 8 0.02
527 137 0.37
528 1 0.00
530 1 0.00
531 3 0.01
533 2 0.01
534 1 0.00
535 1 0.00
536 4 0.01
537 1 0.00
538 1 0.00
539 209 0.56
540 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (532 bp):
CTGCCACAACCCGCAGTCCAGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACA
CACGAAAGGAGCTAGCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCC
CGATCCCCCCTGCGTGCTGCCGATCCTGCTTGGCCACTGCAACACTCCGTTCAGTCCGATCTTAG
ACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAA
ATGAGCGTGCAGGCACTCAGCTAGCCAGAGAGCCAGAATGCACAAGCCAAGGAACAGTTCGGTCC
CCCCTGCGTGCTATCAATCTTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGA
ACTCCATATGCTTACACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCG
GGTGCTGAGCCGACTGAAGCTGTATAATGCCCAAGCTAGGGATCGGCCCGGTCCCCCTCTATGTG
CTGTCGGTCCCA
Found at i:14049402 original size:196 final size:194
Alignment explanation
Indices: 14049055--14049445 Score: 455
Period size: 196 Copynumber: 2.0 Consensus size: 194
14049045 CCCCCCTGCG
* ** **
14049055 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGATTTGATCTTAGACTGGGAATGAACTCTGTA
1 TGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATA
* * * * * * *
14049120 TGCTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCA
66 TGCTTACACTGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * * *
14049185 GTTAGCCAGAGAGGCAGAATGCACATGCCGAGGATCAG-TCTGGTCCCTCCTGCGTGCTATCGAT
131 GCTAGCCAGAGAAGAAGAATGCACAAG-CGAGGATCAGCTC-GGTCCC-CCTGCATGCTATCGAT
14049249 CC
193 CC
* * * *
14049251 TGCTGCTGGTCCTGCTACCGCAAGCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATA
1 TGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATA
* ***
14049316 TGCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCCTGCCACGAAACGAGCATGCGGGCACTC
66 TGCTTACAC-TGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCACTC
* * * *
14049380 AGCTGGTC-GAAGAAGAAGAATGCGCAAGCTAGGATCAGCTCGGTCCCCCTGCATGCTATCGATC
130 AGCTAGCCAG-AGAAGAAGAATGCACAAGCGAGGATCAGCTCGGTCCCCCTGCATGCTATCGATC
14049444 C
194 C
14049445 T
1 T
14049446 ACTACTATAA
Statistics
Matches: 163, Mismatches: 29, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
194 18 0.11
195 16 0.10
196 128 0.79
197 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (194 bp):
TGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATA
TGCTTACACTGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
GCTAGCCAGAGAAGAAGAATGCACAAGCGAGGATCAGCTCGGTCCCCCTGCATGCTATCGATCC
Found at i:14049817 original size:158 final size:158
Alignment explanation
Indices: 14049327--14049817 Score: 381
Period size: 159 Copynumber: 3.1 Consensus size: 158
14049317 GCTTACACAT
** *** * * * **
14049327 GGAATGAACTCCGTATGCCTAAGCCCTGCCACGAAACGAGCATGCGGGCACTCAGCTGGTCGAAG
1 GGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGCTGACCGAAG
* * * * * * * *
14049392 AAGAAGAATGCGCAAG-CTAGGATC-AGCTCGGT--CCCCCTGCATGCTATCGATCCTACTACTA
66 AGGCACAATGCGCAAGCCGAGGATCGA-CTCGATCGCCCCCTGCATGCTGTCGATCCTGCTACCA
* * *
14049453 TAACCCTCGGTCCGGTCCGATCTTAGACTG
130 CAACCCTC-GTCCGATCTGATCTTAGACTG
* * * * *
14049483 GGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGCGCTGAGCTGACCGAA
1 GGAATGAACTCT-ATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGCTGACCGAA
* * * * ** * * *
14049547 GAGGCATAATGCGTAAGCCGAGGATTGACTCGGTCGCCTTCTGCGTGCTGTCGGTCCCGCTACCA
65 GAGGCACAATGCGCAAGCCGAGGATCGACTCGATCGCCCCCTGCATGCTGTCGATCCTGCTACCA
**
14049612 CAACCCTCGATCCGA-CTGGGGCTTAGACAT-
130 CAACCCTCG-TCCGATCT-GATCTTAGAC-TG
* ** ** * * *
14049642 CGAATGAACTCCCTATGCCTAAGCCAACCCTTGAAACGGGCGTGT-GGGTGCTCAG-TCGACCGG
1 GGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGT-TCGGGCGCTCAGCT-GACCGA
** * *
14049705 AGAGGCACAATGCGCAAGGTGGGGATCGACTCGATC-CCCCCTGCATGCTGTCGATCCTGCTGCC
64 AGAGGCACAATGCGCAAGCCGAGGATCGACTCGATCGCCCCCTGCATGCTGTCGATCCTGCTACC
14049769 ACAACCCTCAGTCCGATCTGATCTTAGACTG
129 ACAACCCTC-GTCCGATCTGATCTTAGACTG
*
14049800 GGAACGAACTCTATATGC
1 GGAATGAACTCTATATGC
14049818 TTAGACTACG
Statistics
Matches: 258, Mismatches: 63, Indels: 26
0.74 0.18 0.07
Matches are distributed among these distances:
156 63 0.24
157 13 0.05
158 62 0.24
159 118 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGCTGACCGAAG
AGGCACAATGCGCAAGCCGAGGATCGACTCGATCGCCCCCTGCATGCTGTCGATCCTGCTACCAC
AACCCTCGTCCGATCTGATCTTAGACTG
Found at i:14050187 original size:26 final size:26
Alignment explanation
Indices: 14050158--14050210 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14050148 TTGATCCGAT
14050158 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
*
14050184 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14050210 C
1 C
14050211 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14050223 original size:183 final size:185
Alignment explanation
Indices: 14050000--14050369 Score: 476
Period size: 183 Copynumber: 2.0 Consensus size: 185
14049990 TCCGGTTGGG
* * * *
14050000 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAA
* * * * *** *
14050065 CCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGGTCGGT-CC-CCCTGCGTGCTGTCGATC
66 CCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGATC
* * *
14050128 CTGCTATCGCAACCCTCGGTTTGATCCGATCTTAGACT-GGAAATGAACTCCGTAT
131 CTGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTAGG-AATGAACTCCGTAT
* * * *
14050183 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAA
* *
14050248 CCGACTAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGTGTGCTGTCGATC
66 CCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGATC
* * * * *
14050313 TTGCTGCCACAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTTCGTAT
131 CTGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
14050368 GC
1 GC
14050370 ATAAGTCAAG
Statistics
Matches: 158, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 91 0.58
184 2 0.01
185 63 0.40
186 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (185 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAA
CCGACCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGATC
CTGCTACCACAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:14050557 original size:159 final size:159
Alignment explanation
Indices: 14050184--14050603 Score: 427
Period size: 159 Copynumber: 2.6 Consensus size: 159
14050174 ACTCCGTATG
* *
14050184 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGC
*
14050249 CGACTAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGTGTGCTGTCGATCT
66 CGACTAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCTCCCTGTGTGCTGTCGATCT
** * * *
14050314 TGCTGCCACAACCCTCGGTCTGGTTCGAT
131 CACTACCACAACCCTCGGTCTGCTGCGAT
* * * * *
14050343 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAAGCCACGAAACGAACATGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGC
* * * * * * *
14050408 C-AGTTGAAGAGGCATAATGCGTAAGCTGGGGATCGGCCCAATCCC-CCTCTGTGTGCTGTCGGT
66 CGACTAG-AGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCTCC-CTGTGTGCTGTCGAT
* * * *
14050471 CTCACTACCACAGCCCTCGGTTTGACTGGGGT
129 CTCACTACCACAACCCTCGGTCTG-CTGCGAT
* * * ** **
14050503 -TTAGAC-ACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAG
* * * * * *
14050566 CC-AGTCATAGAGGCAGAATGTGTAAGCCAGGGATCGAC
65 CCGACT-AGAGAGGCAAAATGCGCAAGCCGGGGATCGAC
14050604 TCGGTCTTCC
Statistics
Matches: 213, Mismatches: 43, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 6 0.03
159 204 0.96
160 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGC
CGACTAGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCTCCCTGTGTGCTGTCGATCT
CACTACCACAACCCTCGGTCTGCTGCGAT
Found at i:14050631 original size:869 final size:867
Alignment explanation
Indices: 14049260--14050990 Score: 2012
Period size: 869 Copynumber: 2.0 Consensus size: 867
14049250 CTGCTGCTGG
* * *
14049260 TCCTGCTACCGCAAGCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTACAC
1 TCCTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTACAC
*** * * * *
14049325 ATGGAATGAACTCCGTATGCCTAAGCCCTGCCACGAAACGAGCATGCGGGCACTCAGCTGGTCGA
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGCTAGA
* * * * *
14049390 AGAAGAAGAATGCGCAAGCTAGGATCAGCTCGGTCCCCCTGCATGCTATCGATCCTACTACTATA
131 AGAAGAAGAATGCGCAAGCGAGGATCAGCCCAGTCCCCCTGCATGCTATCGATCCTACTACCACA
* * *
14049455 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAT
196 ACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAAC
*** * * * * * ** *
14049520 GAGTGTTCGGGCGCTGAGCTGACCGAAGAGGCATAATGCGTAAGCCGAGGATTGACTCGGTCGCC
261 GAACATGCGGGCACTGAGCAGACCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCAATCCCC
* *
14049585 TTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATCGAATGAA
326 CTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATCGAATGAA
* * * *
14049650 CTCCCTATGCCTAAGCCAACCCTTGAAACGGGCGTGTGGGTGCTCAGTCGACCGGAGAGGCACAA
391 CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGACCAGAGAGGCACAA
*** ** *
14049715 TGCGCAAGGTGGGGATCGACTCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCACAACCCTCAG
456 TGCGCAAGCCAGGGATCGACTCGATCCCCCCTGCATGCTACCGATCCTACTGCCACAACCCTCAG
* * * * * *
14049780 TCCGATCTGATCTTAGACTGGGAACGAACTCTATATGCTTAGACTACGAATGAACTTCGTATGCA
521 TCCGATCCGATCTTAGACAGAGAACGAACTCCATATGCTTAGACTACGAATGAACTCCATATGCA
* * * *
14049845 TAAGTGAACCTC-CGAAACGAGCGTACGGGTGCTAAACCG-GCTGGAGAGGCC-GATCGGAGAGG
586 TAAGTCAACC-CACGAAACGAGCGT-CCGGCGCTAAACCGATC-GGAGAGGCCAG-TCGGAGAGG
* * * * * * * *
14049907 CATAATGCACAAGTCGGGGATCAGCTCGGT-CCCCCTCTGCGTGCTGCCGATCCCGCTGCCGGTC
647 CATAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTCCGCATGCTGCCAATCCCGCTACCGGTC
* ** *
14049971 TTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCA
712 TTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* *
14050036 ACCCATGAAAT-GAGCGTACGGGCGCTCAACCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATC
777 ACCCATG-AATCGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAACCTGGGGATC
**
14050100 GGGTCGGT-CCCCCTGCGTGCTGTCGA
841 GGCCCGGTCCCCCCTGCGTGCTGTCGA
* * * *
14050126 TCCTGCTATCGCAACCCTCGGTTTGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTACAC
* * * *
14050191 -TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACTA
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCG-CTA
* * ** * * *
14050255 G-AGAGGCAA-AATGCGCAAGCCGGGGATC-GACCCAGTCCCTCCCTGTGTGCTGTCGATCTTGC
129 GAAGAAG-AAGAATGCGCAAG-CGAGGATCAG-CCCAGT-CC-CCCTGCATGCTATCGATCCTAC
* * * *
14050317 TGCCACAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAAGCC
189 TACCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCC
** * * *
14050382 ACGAAACGAACATGCGGGCACTGAGCCAG-TTGAAGAGGCATAATGCGTAAGCTGGGGATCGGCC
254 ACGAAACGAACATGCGGGCACTGAG-CAGACCGAAGAGGCATAATGCGTAAGCCGAGGATCGACC
* * * * ** *
14050446 CAATCCCCCTCTGTGTGCTGTCGGTCTCACTACCACAGCCCTCGGTTTGACTGGGGTTTAGACA-
318 CAATCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCGATCCGACTGGGGCTTAGACAT
* *
14050510 CGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCC-AGTCAT
383 C-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGA-CCAG
* * * * ** * *
14050574 AGAGGCAGAATGTGTAAGCCAGGGATCGACTCGGTCTTCCCTGCATGCTACCGATCCTACTGTCG
446 AGAGGCACAATGCGCAAGCCAGGGATCGACTCGATCCCCCCTGCATGCTACCGATCCTACTGCCA
** ** * * * ** *
14050639 CAACCCTTGGTTTGGTCCGATCTTAGACAGAGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
511 CAACCCTCAGTCCGATCCGATCTTAGACAGAGAACGAACTCCATATGCTTAGACTACGAATGAAC
* * * * *
14050704 TCCATATGCGTAAGTCAACCCACGAAACGAGTGTCCGGCGCTCAGCCGATCGGAGTGGCCAGTCG
576 TCCATATGCATAAGTCAACCCACGAAACGAGCGTCCGGCGCTAAACCGATCGGAGAGGCCAGTCG
* * *
14050769 GAGAGGCGTAATGCCCAAGCCGAGGATCAGCCCGATCCCCCCTCCGCATGCTGCCAATCTCGCTA
641 GAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTCCGCATGCTGCCAATCCCGCTA
* *
14050834 CCGGTCTTGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCT
706 CCGGTCTTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * ** ** *
14050899 AAGCCAACCCATGAATCGAGTGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGTGCAACCTGG
771 AAGCCAACCCATGAATCGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAACCTGG
*
14050964 GGATTGGCCCGGTCCCCCCTGCGTGCT
836 GGATCGGCCCGGTCCCCCCTGCGTGCT
14050991 ACCAATCCTG
Statistics
Matches: 713, Mismatches: 136, Indels: 28
0.81 0.16 0.03
Matches are distributed among these distances:
865 1 0.00
866 122 0.17
867 14 0.02
868 59 0.08
869 502 0.70
870 15 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (867 bp):
TCCTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGAAATGAACTCCATATGCTTACAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGCCGCTAGA
AGAAGAAGAATGCGCAAGCGAGGATCAGCCCAGTCCCCCTGCATGCTATCGATCCTACTACCACA
ACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAAC
GAACATGCGGGCACTGAGCAGACCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCAATCCCC
CTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCGATCCGACTGGGGCTTAGACATCGAATGAA
CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGACCAGAGAGGCACAA
TGCGCAAGCCAGGGATCGACTCGATCCCCCCTGCATGCTACCGATCCTACTGCCACAACCCTCAG
TCCGATCCGATCTTAGACAGAGAACGAACTCCATATGCTTAGACTACGAATGAACTCCATATGCA
TAAGTCAACCCACGAAACGAGCGTCCGGCGCTAAACCGATCGGAGAGGCCAGTCGGAGAGGCATA
ATGCACAAGCCGAGGATCAGCCCGATCCCCCCTCCGCATGCTGCCAATCCCGCTACCGGTCTTGC
TGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ATGAATCGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAACCTGGGGATCGGCCC
GGTCCCCCCTGCGTGCTGTCGA
Found at i:14050689 original size:26 final size:26
Alignment explanation
Indices: 14050660--14050712 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14050650 TTGGTCCGAT
*
14050660 CTTAGACAGAGAATGAACTCCGTATG
1 CTTAGACAGAGAATGAACTCCATATG
* * *
14050686 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACAGAGAATGAACTCCATATG
14050712 C
1 C
14050713 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGAGAATGAACTCCATATG
Found at i:14051369 original size:158 final size:157
Alignment explanation
Indices: 14051018--14051382 Score: 403
Period size: 158 Copynumber: 2.3 Consensus size: 157
14051008 TCCTACTACT
* * * * *
14051018 ACAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * **
14051083 ACGAGCGTGCGGGCGCTGAGCCGGCCAGAGAGGCATAATTCGTAAGTTGGGGATCGACCCGATCC
66 ACGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCC
*
14051148 CCCTTTACATGCTATCGGTCCCACTGCC
131 CCC-TTACATGCTATCGATCCCACTGCC
** * *
14051176 ACAACCCTCGGTCCGGT-TGGGGCTTGGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 ACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
14051239 GAAACGAGCTTACGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACTCGA
64 G-AACGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGA
* * * ** *
14051304 TCCTCCC-TGCGTGCTGTCGATCCTGCTGTC
128 TCC-CCCTTACATGCTATCGATCCCACTGCC
** *
14051334 GTAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCCTATGC
1 ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGC
14051383 TTAGACTGGG
Statistics
Matches: 169, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 107 0.63
159 58 0.34
160 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
ACGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCC
CCCTTACATGCTATCGATCCCACTGCC
Found at i:14051392 original size:26 final size:26
Alignment explanation
Indices: 14051356--14051408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14051346 CCGGTCTAAT
14051356 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
14051382 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14051408 C
1 C
14051409 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14052609 original size:26 final size:26
Alignment explanation
Indices: 14052580--14052632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14052570 CTGGTCCAAT
14052580 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14052606 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14052632 C
1 C
14052633 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14054559 original size:26 final size:26
Alignment explanation
Indices: 14054508--14054560 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14054498 CCAGTCCGAT
**
14054508 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14054534 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14054560 C
1 C
14054561 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14054941 original size:159 final size:161
Alignment explanation
Indices: 14054534--14054977 Score: 425
Period size: 164 Copynumber: 2.8 Consensus size: 161
14054524 ACTCTGTATG
* * * **
14054534 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATACGAACGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * ** * *
14054599 CGA-TAGAAGAGGTAGAATGCGTAAGCCGGGGATCGACCCCGTCCCCCCCTGCGAGCTATCGATC
66 TGACTAGAAGAGGTAGAATGCGCAAGCCGGGGATCG-GTCGGT-CCCCCCTGCGTGCTATCGATC
* * * * *
14054663 CGGTTGGCGCAACCCTCGGTCCGGTCTGGTCTGA
129 CCGCTGCCACAACCCTCGGTCCGGTCTGG-CGGA
* * * * * * * *
14054697 TCTTAGAC-TGGGAATGAACTCCGTAAGCCTAAGTCAACCCATAAAATGAGAGTGCGGGTGTTGA
1 -CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * *
14054761 GCTGAC-CGAAGAGGCATAATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGG
64 GCTGACTAGAAGAGGTAGAATGCGCAAGCCGGGGATCGGTC-GGTCCCCC-CTGCGTGCTATCGA
*
14054825 TCCCGCTGCCACAACCCTCGGTCTGG-CTGG-GGA
127 TCCCGCTGCCACAACCCTCGGTCCGGTCTGGCGGA
* * *
14054858 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * *
14054922 TTACTGGAA-AGGTAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTACGTGCT
66 TGACTAGAAGAGGTAGAATGCGCAAGCCGGGGATCGG-TCGGTCCCCCCTGCGTGCT
14054978 GCTGATCCTA
Statistics
Matches: 224, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
158 8 0.04
159 85 0.38
160 6 0.03
161 2 0.01
163 11 0.05
164 112 0.50
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (161 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
TGACTAGAAGAGGTAGAATGCGCAAGCCGGGGATCGGTCGGTCCCCCCTGCGTGCTATCGATCCC
GCTGCCACAACCCTCGGTCCGGTCTGGCGGA
Found at i:14055044 original size:26 final size:26
Alignment explanation
Indices: 14055015--14055067 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14055005 CTGGTCCGAT
14055015 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14055041 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14055067 C
1 C
14055068 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14055796 original size:26 final size:26
Alignment explanation
Indices: 14055758--14055810 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14055748 GGCTCAAAAT
*
14055758 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14055784 CTTAGACAT-GGAATGCACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14055810 C
1 C
14055811 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14056078 original size:159 final size:158
Alignment explanation
Indices: 14055783--14056301 Score: 419
Period size: 159 Copynumber: 3.3 Consensus size: 158
14055773 AACTCCTTAT
* * * * * * *
14055783 GCTTAGACATGGAATGCACTCCATATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCATAAGCCAACCCACGAAATGAGCGTGCAGGCGCTAAG
* * ** * * *
14055848 CCGGCCGGAGAGGTAGAATGCCTAAGCCGGGGATCGGCCTGATCCTCCCCTATGTGTTGTCGATC
65 CCAGCCGAAGAGCCAGAATGCCTAAGCCGGGGATCGGCCCGATCCTCCCCTACGTGCTGTCGATC
* * * * *
14055913 CTGCTGCCACAACCCTCTGTCCGATTTGA
130 CCGCTGCAACAACCCTCAGTCCGACTGGA
* *
14055942 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCC-TATGCATAAGCCAACCCACGAAATGAGCGTGCAGGCGCTAA
* * * *
14056006 GCCAGTCGAAGAGCCATAATGCGC-AAGCCGGGGATCGGCCCGATCC-CTCTCTGCGTGCTG-CT
64 GCCAGCCGAAGAGCCAGAATGC-CTAAGCCGGGGATCGGCCCGATCCTC-CCCTACGTGCTGTC-
* *
14056068 GGTCCCGCTGCAACAACCCTCAGTCCGACTGGG
126 GATCCCGCTGCAACAACCCTCAGTCCGACTGGA
* * * *
14056101 GCTTAGACATGGAATGAACTCTCTATGCTTAAGCCAACCCACGAAATGGGCTTAC-GGACGCTCA
1 GCTTAGACATGGAATGAACTC-CTATGCATAAGCCAACCCACGAAATGAGCGTGCAGG-CGCT-A
* * ** *
14056165 A-CC-GACCGGAGAGGCAGAATGCAC-AAGCCGGGGATCAACCCGATCC-CCCCTGCGTGCTGTC
63 AGCCAG-CCGAAGAGCCAGAATGC-CTAAGCCGGGGATCGGCCCGATCCTCCCCTACGTGCTGTC
* * *
14056226 GAT--C-CTG---CTA-CCTAAGT-C-AAT-GA
126 GATCCCGCTGCAACAACCCTCAGTCCGACTGGA
* * *
14056249 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGT
1 GCTTAGACATGGAATGAACTCC-TATGCATAAGCCAACCCACGAAATGAGCGT
14056302 ATGGGCACTC
Statistics
Matches: 297, Mismatches: 52, Indels: 33
0.78 0.14 0.09
Matches are distributed among these distances:
147 1 0.00
148 47 0.16
149 2 0.01
150 1 0.00
151 6 0.02
152 2 0.01
155 3 0.01
156 1 0.00
158 19 0.06
159 210 0.71
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTATGCATAAGCCAACCCACGAAATGAGCGTGCAGGCGCTAAGC
CAGCCGAAGAGCCAGAATGCCTAAGCCGGGGATCGGCCCGATCCTCCCCTACGTGCTGTCGATCC
CGCTGCAACAACCCTCAGTCCGACTGGA
Found at i:14056727 original size:26 final size:26
Alignment explanation
Indices: 14056698--14056750 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14056688 TCGGTCTGAT
14056698 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
14056724 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14056750 C
1 C
14056751 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14059126 original size:159 final size:156
Alignment explanation
Indices: 14058800--14059305 Score: 491
Period size: 159 Copynumber: 3.2 Consensus size: 156
14058790 GTGGCTCAAA
* * * * *
14058800 ATCTTAGATTGGAAATGAACTCCGTATGCCTAAGCCAAACCCACGAAACGAGAGTGCGGGCACTC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCCACGAAACGAGTGTGCGGGTACTA
* * * *
14058865 AGTTGACCGAAGAGGCAGAATGCACAAGCCGAGGATC-GACCCGTTCCCCCCTTGCGTGCTGTCG
65 AGCTGATCGAAAAGGCAGAATGCGCAAGCCG-GGATCGGA-CCGTTCCCCCC-TGCGTGCTGTCG
* *
14058929 ATCCTGCTGCCGTAACCCTCAGTCTGGTCTG
127 ATCCTACTGCCGTAACCCTCGGTCTGG-CTG
* * * * * * *
14058960 ATCTTAGACTGGGAATGAACTTCGTGTGCATAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTACTAA
* *
14059025 GCTGATCGAAAAGGCATAATGCGCAAGCCTGGGATCGGACCGGTCCCCCTCTGCGTGCTGTCGAT
66 GCTGATCGAAAAGGCAGAATGCGCAAGCC-GGGATCGGACCGTTCCCCC-CTGCGTGCTGTCGAT
**
14059090 CCTACTGCCACAACCCTCGGTCTGGCTGG
129 CCTACTGCCGTAACCCTCGGTCTGGCT-G
** * * * * * *
14059119 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGTGTGCGTTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC--GAGTGTGCGGGTAC
* * * *
14059183 -AACCTG-TCGAAAAGGTAGAATGAGCAAGCCGGGGATCGG-CTCGTTCCCCCCTGCGTGCTGCC
63 TAAGCTGATCGAAAAGGCAGAATGCGCAAGCC-GGGATCGGAC-CGTTCCCCCCTGCGTGCTGTC
* * * **
14059245 GATCCGACTGTCGTAACCCTCGGTCCGATTTG
126 GATCCTACTGCCGTAACCCTCGGTCTG-GCTG
*
14059277 ATCTTAGACTGGGAATGAACTCCATATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
14059306 ATAAACTGGG
Statistics
Matches: 284, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 61 0.21
159 173 0.61
160 39 0.14
161 10 0.04
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTACTAA
GCTGATCGAAAAGGCAGAATGCGCAAGCCGGGATCGGACCGTTCCCCCCTGCGTGCTGTCGATCC
TACTGCCGTAACCCTCGGTCTGGCTG
Found at i:14060725 original size:158 final size:155
Alignment explanation
Indices: 14060209--14061027 Score: 534
Period size: 159 Copynumber: 5.2 Consensus size: 155
14060199 ACCCCATATG
* * *
14060209 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATG-GGGCGCTTA
1 CTTAGACATGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCG--TGCGGGCG-TTA
* * * * *
14060273 GCCGACCAGAGAGGA-AGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTACGTGCTATCGATC
63 GCCGATCGGAGA-GACAGAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCTATGTGCTACCGATC
* *
14060337 CTGCT-ACTGCAACCCTTGGCCTGGTCTGAT
126 CTGCTGAC-GCAACCCTCGGTCTGGTCTGAT
*
14060367 CTTAGAC-TGGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCG-TTAG
* * * * * * * * *
14060431 CTGGTCGAAGAGGCATAATGCGCAAGCGGAGGATTGGCCCGGTCCCCCTCTTCGTACTGCC-AGT
64 CCGATCGGAGAGACAGAATGCGCAAGCGG-GGATCGGCCCGGTCCCCCT-AT-GTGCTACCGA-T
* * * * * **
14060495 CCCGCTGCCACAACCCTCGGT-TCGACTGGGG
125 CCTGCTGACGCAACCCTCGGTCTGGTCT-GAT
* * *
14060526 CTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCACGAAAC-AGGCGTGCGGGCGTTCA
1 CTTAGACATGGAATGAAATCCGTATGCATAAGTC-AACCCACGAAACGA-GCGTGCGGGCGTT-A
* * * * *
14060589 GCCAATCGGAGAGACAGAATGCGCAAGCCAGGGATCAGCCCGATCCCACCTGTGTGCTACCGATC
63 GCCGATCGGAGAGACAGAATGCGCAAG-CGGGGATCGGCCCGGTCCC-CCTATGTGCTACCGATC
*
14060654 CTGCTGTCGCAACCCTCGGTCTGGTCTGAT
126 CTGCTGACGCAACCCTCGGTCTGGTCTGAT
* * * * *
14060684 CTTAGAC-TGGGAATGAAATTCGTATGCATAAGTCAACCCACGAAATGAGTGTCCGGGCGCTGAG
1 CTTAGACAT-GGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCG-TTAG
** ** * * * * * * * *
14060748 CCGGCCAAAGAGGCATAATACGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGCATGCTTCC-AGT
64 CCGATCGGAGAGACAGAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCTATG--TGCTACCGA-T
* * * **
14060812 CCCGCT-ACCACAACCCTCGGTCCGG-CTGGGG
125 CCTGCTGA-CGCAACCCTCGGTCTGGTCT-GAT
* * * * * * *
14060843 CTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCATGAAACG-GACGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAG-CGTGCGGGCG-TTAG
** * * *
14060907 CCGA-CTGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGTTC
64 CCGATC-GGAGAGACAGAATGCGCAAG-CGGGGATCGGCCCGGT-CCCCCTATGTGCTACCGATC
* * * * * * *
14060971 CTACTGTCGCATCCCTCAGTTTGATCCGAT
126 CTGCTGACGCAACCCTCGGTCTGGTCTGAT
* *
14061001 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAAATCCGTATGC
14061028 TTAGACTGGG
Statistics
Matches: 505, Mismatches: 122, Indels: 68
0.73 0.18 0.10
Matches are distributed among these distances:
156 6 0.01
157 51 0.10
158 210 0.42
159 223 0.44
160 15 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTAGCC
GATCGGAGAGACAGAATGCGCAAGCGGGGATCGGCCCGGTCCCCCTATGTGCTACCGATCCTGCT
GACGCAACCCTCGGTCTGGTCTGAT
Found at i:14060794 original size:317 final size:312
Alignment explanation
Indices: 14060208--14061027 Score: 1027
Period size: 317 Copynumber: 2.6 Consensus size: 312
14060198 AACCCCATAT
*
14060208 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATG-GGGCGCTT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCG--TGCGGGCG-TT
* * * *
14060272 -AGCCGACCAGAGAGGAAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTACGTGCTATCGAT
62 CAGCCGA-CGGAGA-GAAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCCCTACGTGCTACCGAT
* * *
14060336 CCTGCT-ACTGCAACCCTTGGCCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGT
124 CCTGCTGTC-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGT
* * * * *
14060400 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCTGGTCGAAGAGGCATAATGCGCAAGCGGAGGAT
188 CAACCCACGAAACGAGCGTCCGGGCGCTGAGCCGGCCAAAGAGGCATAATACGCAAGCGGAGGAT
* * * * *
14060465 TGGCCCGGTCCCCCTCTTCGTACTGCCAGTCCCGCTGCCACAACCCTCGGTTCGACTGGG
253 CGGCCCGGTCCCCCTCTGCATACTGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGG
*
14060525 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACAGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGTTCAG
* * * **
14060590 CCAATCGGAGAGACAGAATGCGCAAGCCAGGGATCAGCCCGATCCCACCTGTGTGCTACCGATCC
65 CCGA-CGGAGAGA-AGAATGCGCAAGCCGGGGATC-GCCCGGTCCC-CCTACGTGCTACCGATCC
*
14060655 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATTCGTATGCATAAGTCAA
126 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCAA
* *
14060720 CCCACGAAATGAGTGTCCGGGCGCTGAGCCGGCCAAAGAGGCATAATACGCAAGTC-GAGGATCG
191 CCCACGAAACGAGCGTCCGGGCGCTGAGCCGGCCAAAGAGGCATAATACGCAAG-CGGAGGATCG
* * * * *
14060784 GTCGGGTCCCCCTCTGCATGCTTCCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGG
255 GCCCGGTCCCCCTCTGCATACTGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGG
* * * *
14060842 GCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCATGAAACGGACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG-CGTGCGGGCGTTCAG
* *
14060907 CCGACTGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGTTCC
65 CCGAC-GGAGA-GAAGAATGCGCAAGCCGGGGATCG-CCCGGT-CCCCCTACGTGCTACCGATCC
* * * * * * * *
14060972 TACTGTCGCATCCCTCAGTTTGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
126 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATGC
14061028 TTAGACTGGG
Statistics
Matches: 436, Mismatches: 55, Indels: 24
0.85 0.11 0.05
Matches are distributed among these distances:
315 6 0.01
316 46 0.11
317 377 0.86
318 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (312 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGTTCAGC
CGACGGAGAGAAGAATGCGCAAGCCGGGGATCGCCCGGTCCCCCTACGTGCTACCGATCCTGCTG
TCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCATAAGTCAACCCAC
GAAACGAGCGTCCGGGCGCTGAGCCGGCCAAAGAGGCATAATACGCAAGCGGAGGATCGGCCCGG
TCCCCCTCTGCATACTGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGG
Found at i:14061052 original size:26 final size:26
Alignment explanation
Indices: 14061001--14061053 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14060991 TTGATCCGAT
**
14061001 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14061027 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14061053 C
1 C
14061054 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14063140 original size:26 final size:26
Alignment explanation
Indices: 14063083--14063140 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
14063073 TATGGGTTGA
*
14063083 CTTAGGCATACAGAGTTCATCCCCAG
1 CTTAAGCATACAGAGTTCATCCCCAG
* *
14063109 -TCTAAGCATACGGAGTTCATTCCCAG
1 CT-TAAGCATACAGAGTTCATCCCCAG
14063135 CTTAAG
1 CTTAAG
14063141 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 25 0.93
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAAGCATACAGAGTTCATCCCCAG
Found at i:14063337 original size:26 final size:26
Alignment explanation
Indices: 14063307--14063359 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14063297 GTTGACTTAG
14063307 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14063333 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14063359 G
1 G
14063360 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14063527 original size:22 final size:22
Alignment explanation
Indices: 14063501--14063585 Score: 112
Period size: 22 Copynumber: 4.2 Consensus size: 22
14063491 GTCGGGGGGT
14063501 GTGCTCACATGATGTGCGATGG
1 GTGCTCACATGATGTGCGATGG
*
14063523 GTG----C-TG--GTACGATGG
1 GTGCTCACATGATGTGCGATGG
14063538 GTGCTCACATGATGTGCGATGG
1 GTGCTCACATGATGTGCGATGG
14063560 GTGCTCACATGATGTGCGATGG
1 GTGCTCACATGATGTGCGATGG
14063582 GTGC
1 GTGC
14063586 GATGGGAGTG
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
15 11 0.20
17 2 0.04
18 1 0.02
19 1 0.02
20 2 0.04
22 37 0.69
ACGTcount: A:0.16, C:0.18, G:0.39, T:0.27
Consensus pattern (22 bp):
GTGCTCACATGATGTGCGATGG
Found at i:14063664 original size:26 final size:26
Alignment explanation
Indices: 14063628--14063679 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14063618 GTTGACTTAG
14063628 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14063654 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14063680 AATCAGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14064161 original size:26 final size:26
Alignment explanation
Indices: 14064125--14064176 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14064115 TTGGCTTAGT
*
14064125 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
14064151 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
14064177 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:14064687 original size:25 final size:26
Alignment explanation
Indices: 14064657--14064708 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
14064647 GTTGGCTTAG
* *
14064657 GCATACGGAGCTCATT-CCATTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
14064682 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
14064708 G
1 G
14064709 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:14071267 original size:26 final size:26
Alignment explanation
Indices: 14071237--14071289 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14071227 GTTGACTTAG
14071237 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
14071263 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14071289 G
1 G
14071290 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14071609 original size:26 final size:26
Alignment explanation
Indices: 14071580--14071632 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14071570 GTTGACTTAG
14071580 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
14071606 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14071632 G
1 G
14071633 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14071618 original size:343 final size:341
Alignment explanation
Indices: 14070831--14071949 Score: 1334
Period size: 343 Copynumber: 3.3 Consensus size: 341
14070821 CACCCGTTCG
** * * * *
14070831 ATCCCCGGCTTGCGCATCCTGCCTC-TCTGGTCGGCTGAGCACCCGCACGATCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTATGCCTCTTCGGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
14070895 GACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGA
66 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* ** * * * * *
14070960 ACCGGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGACACCGGGCCGATCCCCCGC
131 ACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGG-GACCGAGCCAATCCCCGGC
* * *
14071025 TTGCGCATTCTGCCTCTCCGGTCGGTTGAGAGCCCGCATGCCTGCTTT-GTGGTTTGGCTTAGGC
195 TTGCGCATTCTGCCTCTCCGGTCGGTTGAGA-CCCGCACGCCCG-TTTCGTGGGTTGGCTTAGGC
* *
14071089 ATAGGGAGTTTATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGTGGCAGCAAGACTGG-A--
258 ATAGGGAGTTTATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
* *
14071151 A-GC-A---GGATCGGGCTA
322 ATGCAAGGGGGACCGGGCCA
* * * * * * *
14071166 ATCCACGGCTTGCGCGTTATGCCTC-TCCGATC-GCTTGAGCGCCCCCACGCTCGTTTCATGGGT
1 ATCCCCGGCTTGCGCATTATGCCTCTTCGGGTCGGC-TCAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
14071229 TGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
14071294 AACCAGACCGAGGGTTACGACAGCAAGATCGGCAACACGCAGGGGGGATCAAGCCAATCCCTGGC
130 AACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCGGC
* * *
14071359 TTGGGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCA
195 TTGCGCATTCTGCCTCTCCGGTCGGTTGAG-ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCA
* * * *
14071424 TAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGTTATGGCAACAGGACCGGCAGCA
259 TAGGGAGTTTATTCCATGTCTAAGCCC-AGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCA
*
14071489 TGCAGAGGGGGACCGGGCCG
323 TGCA-AGGGGGACCGGGCCA
* * *
14071509 ATCCTCGGCTTGCGCATTATGCCTCTTC-GGTCGGCTCAACGCCCGCACGCTTG-TTCTGTGGGT
1 ATCCCCGGCTTGCGCATTATGCCTCTTCGGGTCGGCTCAGCGCCCGCACGCTCGTTTC-GTGGGT
*
14071572 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * **
14071637 GACTGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGAAGGGCAGACCGAG-CAGATCCCCGG
130 AACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCA-ATCCCCGG
* *
14071701 CTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGTC
194 CTTGCGCATTCTGCCTCTCCGGTCGGTTGAG-ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
* *
14071766 ATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGC
258 ATAGGGAGTTTATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
* *
14071831 ATACAAAGGGGGACCGGACCA
322 ATGC-AAGGGGGACCGGGCCA
* * * * ** *
14071852 ATCCCCGGCTTGTGCATTATGCCTTTTCGGGT-GGCTCAGCGCCCGCACGCTTGTTTTGTGTATG
1 ATCCCCGGCTTGCGCATTATGCCTCTTCGGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
14071916 GACTTATGCATACGGAGTTCATTCCCAGTCTAAG
66 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
14071950 ATCGGACCAA
Statistics
Matches: 667, Mismatches: 96, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
333 6 0.01
334 117 0.18
335 150 0.22
337 1 0.00
338 2 0.00
340 1 0.00
342 5 0.01
343 372 0.56
344 13 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (341 bp):
ATCCCCGGCTTGCGCATTATGCCTCTTCGGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
ACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCAATCCCCGGCT
TGCGCATTCTGCCTCTCCGGTCGGTTGAGACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
GGGAGTTTATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCATGC
AAGGGGGACCGGGCCA
Found at i:14072050 original size:157 final size:156
Alignment explanation
Indices: 14071605--14072097 Score: 462
Period size: 157 Copynumber: 3.1 Consensus size: 156
14071595 CCCCAGTCTA
* ** * *
14071605 AGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGGT
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * *
14071670 AGC--ACGAAGGGCAGACCGAGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGT
66 AGCATACAAAGGG-GGACC-AACAGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGC
*
14071733 GCCCGCACGCCCGTTTCGTGGGTTGGCTT
129 GCCCGCACGCTCGTTTC-TGGGTTGGCTT
* * * ** * * *
14071762 AGTCATAGGGAGTTTATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACC
1 AG-CATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCAGGATC
* * * ** *
14071825 GGCAGCATACAAAGGGGGACCGGACCA-ATCCCCGGCTTGTGCATTATGCCTTTTCGGGTGGCTC
63 GGCAGCATACAAAGGGGGACC--AACAGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTG
* *
14071889 AGCGCCCGCACGCTTGTTT-TGTGTATGGACTT
126 AGCGCCCGCACGCTCGTTTCTGGGT-TGG-CTT
* * *
14071921 ATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTG-GGCAGCATGATCGA
1 A-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
***
14071985 CAGCATAC-AAGGGGGACCATTTTGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGC
65 CAGCATACAAAGGGGGACCA-ACAGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGC
*
14072049 GCCTGCACGCTCGTTTCGTGGGTTGGCTT
129 GCCCGCACGCTCGTTTC-TGGGTTGGCTT
*
14072078 AGGCATACGAAGTTCATTCC
1 A-GCATACGGAGTTCATTCC
14072098 ATATCTAAGC
Statistics
Matches: 270, Mismatches: 51, Indels: 30
0.77 0.15 0.09
Matches are distributed among these distances:
155 1 0.00
157 91 0.34
158 70 0.26
159 91 0.34
160 17 0.06
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
AGCATACAAAGGGGGACCAACAGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCTGGGTTGGCTT
Found at i:14073118 original size:158 final size:160
Alignment explanation
Indices: 14072731--14073140 Score: 469
Period size: 159 Copynumber: 2.6 Consensus size: 160
14072721 CACCCGTCTG
* * * *
14072731 ATCCCCGACTTACACATTCTGCCTCTCTGGCCGGCTGAGCGCCCACACGC-CTGTTTTGTGGGTT
1 ATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTT
* * * *
14072795 GGCTTAGGCATACGGAGTTCATT-TCATGTCCAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGA
65 GGCTTAGGCACACGGAGTTCATTCCCATGTCCAAGCACCAGCCAGACCGAGGGTTGCGGCAACGA
*
14072859 GATCTGCAGCATGCAAAGAGGGACCAGGCCA
130 GATCTGCAGCACGCAAAGAGGGACCAGGCCA
*** * *
14072890 ATCCCCGGCTTGTGCATTAC-GCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
1 ATCCCCGGCTTACACATT-CTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
14072954 GACTTAGGCACACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAAC-
65 GGCTTAGGCACACGGAGTTCATTCCCATGTCCAAGCACCAG-CCAGACCGAGGGTTGCGGCAACG
* * * * *
14073016 AGGATC-GACAGCACGC-AGGGGGGACCGGGTCG
129 A-GATCTG-CAGCACGCAAAGAGGGACCAGGCCA
* * * *
14073048 GTCCCCGGCTTACACATTCTACCTCTCCGGCCAGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
14073113 GCTTAGGCACACGGAGTTCATT-CCATGT
66 GCTTAGGCACACGGAGTTCATTCCCATGT
14073141 TTAAGTATAC
Statistics
Matches: 210, Mismatches: 33, Indels: 17
0.81 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 93 0.44
159 109 0.52
160 4 0.02
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.22
Consensus pattern (160 bp):
ATCCCCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCACACGGAGTTCATTCCCATGTCCAAGCACCAGCCAGACCGAGGGTTGCGGCAACGAG
ATCTGCAGCACGCAAAGAGGGACCAGGCCA
Found at i:14073548 original size:26 final size:26
Alignment explanation
Indices: 14073499--14073548 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
14073489 GTTGACTTAG
*
14073499 GCATACAGAGTTCATCCCTGGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
14073525 GCATACGGAGTTCATTCCC-AGTCT
1 GCATACAGAGTTCA-TCCCTAGTCT
14073549 CAGATCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:14073871 original size:26 final size:26
Alignment explanation
Indices: 14073842--14073894 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14073832 GTTAACTTAG
*
14073842 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14073868 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14073894 G
1 G
14073895 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14074107 original size:343 final size:342
Alignment explanation
Indices: 14073486--14074211 Score: 884
Period size: 343 Copynumber: 2.1 Consensus size: 342
14073476 GCTTATTTCA
* * ** * *
14073486 TGGGTTGACTTAGGCATACAGAGTTCATCCCTGGTCTAAGCATACGGAGTTCATTCCCAGTCTCA
1 TGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
*** * * * * *
14073551 GATCAAATTGGATCGATGGTTACGGCAGCAGGATCGACAGCACGCGGAGGGGACCGGACCGATCT
66 GATCAAACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCGGAGCGAACCGGACCGATCC
* * * * *
14073616 TCGGCTAGCACATTCTGCTTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGTTT
131 CCGACTAGCACATTATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
* * *
14073681 AGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCAA
196 AGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACCAA
* * *
14073746 CAGCATGCAGCGGGGGACCGGGTCGAT-CCTCGACGTGCGCATTATGCCTCTTCAGCAAGCTCAG
261 CAGCACGCAGAGGGGGACCGGGCCGATCCCT-GACGTGCGCATTATGCCTCTTCAGCAAGCTCAG
* *
14073810 C-TCCTGCATGCTTGCTCCG
325 CGT-C-GCACGCTCGCTCCG
*
14073829 TGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAA
1 TGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * *
14073894 GATCGAACCAGATCGAGGGTTGCGACAGCAGGATCGATAGCACG-GAGAGCGAACC-GAGTCGAT
66 GATCAAACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCG-GAGCGAACCGGA-CCGAT
* * * * * *
14073957 CCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGC
129 CCCCGACTAGCACATTATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGC
*
14074022 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACC
194 TTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACC
** * * * * **
14074087 GGCAGCACGCAGATGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCA
259 AACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACGTGCGCATTATGCCTCTTCAGCAAGCTCA
* * **
14074152 GCGGTCGTACGCTCGTTTTG
324 GC-GTCGCACGCTCGCTCCG
* * *
14074172 TGGGTTAGCTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 TGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
14074212 ATCGGATCGA
Statistics
Matches: 324, Mismatches: 54, Indels: 10
0.84 0.14 0.03
Matches are distributed among these distances:
342 3 0.01
343 316 0.98
344 4 0.01
345 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (342 bp):
TGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
GATCAAACCAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCGGAGCGAACCGGACCGATCC
CCGACTAGCACATTATGCCTCTCCAGCCGACTGAGCGCCCGCACGCCAGTTTCATGGGTTGGCTT
AGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACCAA
CAGCACGCAGAGGGGGACCGGGCCGATCCCTGACGTGCGCATTATGCCTCTTCAGCAAGCTCAGC
GTCGCACGCTCGCTCCG
Found at i:14074169 original size:159 final size:158
Alignment explanation
Indices: 14073953--14074370 Score: 446
Period size: 159 Copynumber: 2.6 Consensus size: 158
14073943 CGAACCGAGT
* * * * * *
14073953 CGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGT
1 CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
14074018 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGAGTTGTGGCAGC
66 TGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCCAGCCA-ACCGAGAGTTGCGGCAGC
* * * *
14074081 GGGACCGGCAGCACGCA-GATGGGGACCGGGC
129 AGGACCGACAGCACACATG--GGGGACCAGGC
* * * ** * *
14074112 CGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGGTCGTACGCTCGTTTTGTGGGT
1 CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * ** * * * *
14074177 TAGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAG
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAACCGAGAGTTGCGGCAGCAG
* *
14074242 GATCGACAGCATACATGGGGGACCAGGC
131 GACCGACAGCACACATGGGGGACCAGGC
* * * * **
14074270 TGATCCCTGGCTTGCACATTCTGCCTCTCCAACCTACTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
14074335 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
14074371 TTTTGAGCCA
Statistics
Matches: 210, Mismatches: 46, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
158 95 0.45
159 107 0.51
160 8 0.04
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
CGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCCAGCCAACCGAGAGTTGCGGCAGCAG
GACCGACAGCACACATGGGGGACCAGGC
Found at i:14074341 original size:158 final size:159
Alignment explanation
Indices: 14073868--14074371 Score: 444
Period size: 158 Copynumber: 3.2 Consensus size: 159
14073858 CCCAGTCTAA
* * * * * * * * *
14073868 GCATACGAAGTTCATTCCTAGTCTAAGAT-CGAACCAGATCGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCAGACCGAGAGTTGCGGCAGCAGGACCGAC
** * * * * * * ** *
14073932 AGCACGGAGAGCGAACC-GAGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTGAGCG
66 AGCACACAGAGGGGACCAG-GCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCGACTGAGCG
* * *
14073996 CCCGCATGCCCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
14074026 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGAGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCCAGCCAGACCGAGAGTTGCGGCAGCAGGACCGA
* * * * ** * *
14074089 CAGCACGCAGATGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
65 CAGCACACAGA-GGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCGACTGAGC
** * * * *
14074154 GGTCGTACGCTCGTTTTGTGGGTTAGCTTAT
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * *
14074185 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCAGACCGAGAGTTGCGGCAGCAGGACCGAC
* * * *
14074249 AGCATACATG-GGGGACCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCAACCTACTGAGCG
66 AGCACACA-GAGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCGACTGAGCG
14074313 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
14074343 GCATACAGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
14074372 TTTGAGCCAC
Statistics
Matches: 275, Mismatches: 64, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 151 0.55
159 113 0.41
160 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCAGACCGAGAGTTGCGGCAGCAGGACCGAC
AGCACACAGAGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTCCAACCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14075088 original size:26 final size:26
Alignment explanation
Indices: 14075051--14075129 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14075041 GTTGACTTAG
* *
14075051 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
14075077 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14075103 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14075129 G
1 G
14075130 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14075445 original size:159 final size:158
Alignment explanation
Indices: 14075103--14075775 Score: 450
Period size: 159 Copynumber: 4.2 Consensus size: 158
14075093 CCCAGTCTAA
* * *
14075103 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGGC
1 GCATACAG-AGTTCATTCCCAGTCTAAGACCAGACAGGACCGAGGGTTACGGTAGCAGGATCGGC
* * * * *
14075167 AGCATGTAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGTTGAGTGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTCAGCGC
* *
14075232 CCGCATGTCTGTTTCGTGGGTTGGCTGAG
130 CCGCACGTCTGTTTCATGGGTTGGCTGAG
* ** *
14075261 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-CAGGACCGAGGGTTGTGGTAGCGGGATCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACAGGACCGAGGGTTACGGTAGCAGGATCGG
* * * * *
14075324 TAGCACGCAGAGGGGGACCGGGCCGATCCCCGTCTTGTGCATTAC-GCCTCTCCGATCGGCTCAG
64 CAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATT-CTACCTCTCCGACCGGCTCAG
*
14075388 CGCCCGCACG-CTCGTTTCATGGG-TGGACTTAG
127 CGCCCGCACGTCT-GTTTCATGGGTTGG-CTGAG
* * * * * * * **
14075420 GCATACAGAGTTCATTCCCACTCTAAGATCGGATCA-GACTGAGGGTTGCGGCAACAGGATCTAC
1 GCATACAGAGTTCATTCCCAGTCTAAGACCAGA-CAGGACCGAGGGTTACGGTAGCAGGATCGGC
* * * * ** * * * * * * * *
14075484 ACCACGTAAGGGGGGATCGGGTTGGTCCCTGACTTGCGCGTTCTGCCTCTCCGACGGGCTGAGCG
65 AGCACG-CAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTCAGCG
* * *
14075549 CCTGCACG-CTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGTCT-GTTTCATGGGTTGGCTGAG
* * * * *
14075579 GCACACGGAGTTCATTCCCAGTCAAAGATC-GAACTGGACCGAGGGTTACGGTAGCAGGACCAGA
1 GCATACAGAGTTCATTCCCAGTCTAAGACCAG-ACAGGACCGAGGGTTACGGTAGCA-G----G-
* * ** * *
14075643 AGTAGGATTGACAGCACGCAGGGGGGACCG-GACTGATCCCCGGCTTACGCATTCTGCCTCTCCA
59 A-T-CG---G-CAGCACGCAGGGGGGACCGAG-CCGATCCCCGGCTTGTGCATTCTACCTCTCCG
* * * ** *
14075707 ACCGACTGAGCACCCGCACG-CTCGTTTCATGGGTTGAATTAG
117 ACCGGCTCAGCGCCCGCACGTCT-GTTTCATGGGTTGGCTGAG
* * *
14075749 GCATACGGAGTTCATCCCCAGCCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
14075776 CATATAGAGT
Statistics
Matches: 407, Mismatches: 80, Indels: 44
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.01
158 63 0.15
159 226 0.56
160 12 0.03
164 1 0.00
165 1 0.00
166 1 0.00
169 1 0.00
170 93 0.23
171 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGACCAGACAGGACCGAGGGTTACGGTAGCAGGATCGGCA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTCAGCGCC
CGCACGTCTGTTTCATGGGTTGGCTGAG
Done.