Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 104 of 402
Found at i:14075779 original size:26 final size:26
Alignment explanation
Indices: 14075749--14075801 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14075739 GTTGAATTAG
*
14075749 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* * *
14075775 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
14075801 G
1 G
14075802 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:14076117 original size:159 final size:157
Alignment explanation
Indices: 14075782--14076446 Score: 484
Period size: 158 Copynumber: 4.1 Consensus size: 157
14075772 TAAGCATATA
* * * * **
14075782 GAGTTCATTCCCAGTCTAAGATC-AGATCGGATCGAGGGTTGCGGCAGCAAAATCGGTAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCTAG-CCGGACCGAGGGTTACGGCAACAGGATCGGTAGCACGC
* * * * * *
14075846 AGGGGGGA-TCGGGCCGATCTTCAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGTAC
65 AGGGGGGACT-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTAC
* ** * *
14075910 GC-CTGTTTCACGGGTTGGTTGAGGTATA-G
129 GCTC-ATTTCGTGGGTTGCTT-AGGCATACG
* ** * * *
14075939 GAAGTTCATT-CCATATCTAAGCCCTAGCCGGACCGAGGGTTATGGCAGCGGGATCGGTAGCACG
1 G-AGTTCATTCCCA-GTCTAAGATCTAGCCGGACCGAGGGTTACGGCAACAGGATCGGTAGCACG
* * * *
14076003 CAGAGGGGGACTGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGTA
64 CAG-GGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTA
14076068 CGCTCATTTCGTGGGTTGACTTAGGCATACG
128 CGCTCATTTCGTGGGTTG-CTTAGGCATACG
* * * * * * * *** *
14076099 GAGTTTATTCCCAGTCTAAGATC-GGATCGAACTGAAGGTTGCGGCAACAGGATCTACAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCTAG-CCGGACCGAGGGTTACGGCAACAGGATCGGTAGCACGC
* * * ** ***
14076163 AGGGGGGACTAGGCCGGTCC-CTGACTTGCGCATTCTGCCTCTCCGGTGGGCTGAGCGCCTACAC
65 AGGGGGGACTGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTAC
*
14076227 GCTCATTTCGTGGGTTGGCTTAGGCACACG
129 GCTCATTTCGTGGGTT-GCTTAGGCATACG
* * * * *
14076257 GAGTTCATTCCCAGTCAAAGATCTAACTGGACCGAGGGTTACGGCACCAGGACCAACAGTAGGAT
1 GAGTTCATTCCCAGTCTAAGATCTAGCCGGACCGAGGGTTACGGCAACAGG------A-TCGG--
* * ** *
14076322 TGACAGCACGCAGGGGGGACCGGACCGATCC-CTGGCTTGCGCATTCTGCCTCTCCAATCC-ACT
57 T---AGCACGCAGGGGGGACTGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCC-GGCCGGCT
* *
14076385 GAGCACCCGTACGCTCATTTCGTGGGTTGACTTTGGCATACG
117 GAGCGCCCGTACGCTCATTTCGTGGGTTG-CTTAGGCATACG
* *
14076427 GAGTTCATCCCCAGCCTAAG
1 GAGTTCATTCCCAGTCTAAG
14076447 CATACGGAGT
Statistics
Matches: 391, Mismatches: 90, Indels: 41
0.75 0.17 0.08
Matches are distributed among these distances:
157 5 0.01
158 163 0.42
159 113 0.29
160 9 0.02
164 1 0.00
165 1 0.00
169 1 0.00
170 98 0.25
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCTAGCCGGACCGAGGGTTACGGCAACAGGATCGGTAGCACGCA
GGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGC
TCATTTCGTGGGTTGCTTAGGCATACG
Found at i:14076449 original size:26 final size:26
Alignment explanation
Indices: 14076420--14076471 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14076410 GTTGACTTTG
14076420 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
14076446 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
14076472 AATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:14076459 original size:671 final size:670
Alignment explanation
Indices: 14075085--14077338 Score: 2493
Period size: 671 Copynumber: 3.3 Consensus size: 670
14075075 AAGCATATGA
* * *
14075085 AGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
1 AGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * * * * *
14075150 ACGGTAGTAGGATCGGCAGCATGTAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTC
66 ACGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTACCTC
* * * * *
14075215 TCCGACCGGTTGAGTGCCCGCATGTCTGTTTCGTGGGTTGGCTGAGGCATA-CAGAGTTCATTCC
131 TCCGACCGGCTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGTTGAGGCATAGGA-AGTTCATTCC
* *
14075279 ATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGTAGCGGGATCGGTAGCACGCAGAGGGGGACCG
195 ATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGA-CG
* * *
14075344 GGCCGATCCCCGTCTTGTGCATTACGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATG
259 GGCTGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATG
* * *
14075409 GGTGGACTTAGGCATACAGAGTTCATTCCCACTCTAAGATCGGATCAGACTGAGGGTTGCGGCAA
324 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAA
* * ** *
14075474 CAGGATCTACACCACGTAAGGGGGGA-TCGGGTTGGTCCCTGACTTGCGCGTTCTGCCTCTCCGA
389 CAGGATCTACAGCACGT-AGGGGGGACT-AGGCCGGTCCCTGACTTGCGCATTCTGCCTCTCCGA
* *
14075538 CGGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCA
452 CGGGCTGAGCGCCTACACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCA
* *
14075603 AAGATCGAACTGGACCGAGGGTTACGGTAGCAGGACCAGAAGTAGGATTGACAGCACGCAGGGGG
517 AAGATCGAACTGGACCGAGGGTTACGGCACCAGGACCAGAAGTAGGATTGACAGCACGCAGGGGG
* *
14075668 GACCGGACTGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCTCGTT
582 GACCGGACCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCTCATT
14075733 TCATGGGTTGAATTAGGCATACGG
647 TCATGGGTTGAATTAGGCATACGG
** * *
14075757 AGTTCATCCCCAGCCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT
1 AGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* ** * * ** *
14075822 GCGGCAGCAAAATCGGTAGCACGCAGGGGGGATCGGGCCGATCTTCAGCTTACGCATTCTGCCTC
66 ACGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTACCTC
* * ** *
14075887 TCCGACTGGCTGAGTGCCCGTACGCCTGTTTCACGGGTTGGTTGAGGTATAGGAAGTTCATTCCA
131 TCCGACCGGCTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGTTGAGGCATAGGAAGTTCATTCCA
* * *
14075952 TATCTAAGCCCTAGCCGGACCGAGGGTTATGGCAGCGGGATCGGTAGCACGCAGAGGGGGACTGG
196 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGAC-GG
* * ** * * *
14076017 GCTGATCCTCGGCTTGTGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGTACGCTCATTTCGTGG
260 GCTGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGG
* *
14076082 GTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGATC-GAACTGAAGGTTGCGGCAA
325 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACTGAGGGTTGCGGCAA
**
14076146 CAGGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCCTGACTTGCGCATTCTGCCTCTCCGGTG
389 CAGGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCCTGACTTGCGCATTCTGCCTCTCCGACG
14076211 GGCTGAGCGCCTACACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCAAA
454 GGCTGAGCGCCTACACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCAAA
*
14076276 GATCTAACTGGACCGAGGGTTACGGCACCAGGACCA-ACAGTAGGATTGACAGCACGCAGGGGGG
519 GATCGAACTGGACCGAGGGTTACGGCACCAGGACCAGA-AGTAGGATTGACAGCACGCAGGGGGG
* * *
14076340 ACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCAATCC-ACTGAGCACCCGTACGCTCATT
583 ACCGGACCGATCCCCGGCTTACGCATTCTGCCTCTCCAA-CCGACTGAGCACCCGCACGCTCATT
* * *
14076404 TCGTGGGTTGACTTTGGCATACGG
647 TCATGGGTTGAATTAGGCATACGG
*
14076428 AGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTT
1 AGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
*
14076493 ACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTACCTC
66 ACGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTACCTC
* * * * * * *
14076558 TTCGGCCGGCTGAGCGTCCGCACATCCAT-TTT-GTGGGTTGGCTT-AGCCAT-GGGAGTTCATT
131 TCCGACCGGCTGAGTGCCCGCAC-GCC-TGTTTCGTGGGTTGG-TTGAGGCATAGGAAGTTCATT
** *
14076619 CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CTGACAGCACGCAGAAGGGGA
193 CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATC-GGTAGCACGCAGAGGGGGA
* ** * * *
14076683 CCGATTCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCATGCTTGTTTC
257 CGGGCT-GATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTC
* * * * * *
14076748 ATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGGTGCGG
321 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGG
*** * * * *
14076813 CAGTTGGATCGATAGCACGCAGGGGGGACCAGGCCGGTCCCT-AGCTTGCGCATTCTGCCTCTCA
386 CAACAGGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCCTGA-CTTGCGCATTCTGCCTCTC-
* * * * * ** * * * **** * * * *
14076877 TGCTCATTTTGTGGGT-TG-GCTTAGGCA-TATGGAGTTCATTCCATGTC-TAAGCATACAGAGT
449 --C-GA---CG-GGCTGAGCGCCTA--CACGCT-CATTTCGTGGGTTGGCTTAGGCACACGGAGT
* * * * ** * * * * * * * *
14076938 TCATTCCTAGTCTAAGATCGGA-TCAGATTGAAGGTTGCGGTAGCAGGACCAGCAGCAGGATCGG
504 TCATTCCCAGTCAAAGATCGAACT-GGACCGAGGGTTACGGCACCAGGACCAGAAGTAGGATTGA
* * * * ** * *
14077002 CAGCACGCAGGGAGGACC-GAGTCGATCCCTGACTTGTGCATTCTGCCTCTCCAATCGACTG-GG
568 CAGCACGCAGGGGGGACCGGA-CCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGC
* * * *
14077065 AGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGTATACGG
632 A-CCCGCACGCTCATTTCATGGGTTGAATTAGGCATACGG
** * * ** * *
14077105 AGTTCATCCCCAATCTAAGCATATGAAGTTCATTCTTAGTCTAAGATCAGACCGGATCGGGGGTT
1 AGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * * * **
14077170 GCGGTAGCAGGATCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGGCATTCTGGCT
66 ACGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTG-TGCATTCTACCT
* * * * * * *
14077235 CTCC-AGTCGGTTGAGCG-CCGCACACCCGTTTCGTGGGGTTTGGTTTTAGGCATAGGGAGTTCA
130 CTCCGA-CCGGCTGAGTGCCCGCACGCCTGTTTCGT-GGG-TTGG-TTGAGGCATAGGAAGTTCA
* *
14077298 TTCCATGTC-CAG--CCAGTCGGACCGAGGGTTGTGGCAGCGGG
191 TTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGG
14077339 CCGACGGCAC
Statistics
Matches: 1343, Mismatches: 202, Indels: 68
0.83 0.13 0.04
Matches are distributed among these distances:
669 4 0.00
670 225 0.17
671 386 0.29
672 357 0.27
673 3 0.00
676 15 0.01
677 257 0.19
678 65 0.05
679 6 0.00
680 7 0.01
681 18 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (670 bp):
AGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
ACGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTACCTC
TCCGACCGGCTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGTTGAGGCATAGGAAGTTCATTCCA
TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACGGG
CTGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAACA
GGATCTACAGCACGTAGGGGGGACTAGGCCGGTCCCTGACTTGCGCATTCTGCCTCTCCGACGGG
CTGAGCGCCTACACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCAAAGA
TCGAACTGGACCGAGGGTTACGGCACCAGGACCAGAAGTAGGATTGACAGCACGCAGGGGGGACC
GGACCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCTCATTTCAT
GGGTTGAATTAGGCATACGG
Found at i:14076840 original size:158 final size:158
Alignment explanation
Indices: 14076446--14076875 Score: 399
Period size: 158 Copynumber: 2.7 Consensus size: 158
14076436 CCCAGCCTAA
* * *
14076446 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
14076511 GCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGCGTC
66 GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGTGCATTATACCTCTCCGACCGGCTCAGCGTC
* *
14076576 CGCACATCCATTTTGTGGGTTGGCTTAG
131 CGCACATCCATTTTATGGGTTGACTTAG
* ** * *
14076604 CCATG-GGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATGCGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-G
* ** * *
14076665 ACAGCACGCAGAAGGGGACCGATTCGATCCCC-GACTTGTGCATTATGCCTCTCCGATCGGCTCA
63 ACAGCACGCAG-GGGGGACCGAGCCGATCCCCAG-CTTGTGCATTATACCTCTCCGACCGGCTCA
* * * *
14076729 GTG-CC-CGCATGCTTGTTTCATGGGTTGACTTAG
126 GCGTCCGCACATCCAT-TTT-ATGGGTTGACTTAG
* * * ** *
14076762 GCATGCGGAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGGTGCGGCAGTTGGATCGATA
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
14076827 GCACGCAGGGGGGACC-AGGCCGGTCCCTAGCTTGCGCATTCTGCCTCTC
66 GCACGCAGGGGGGACCGA-GCCGATCCCCAGCTTGTGCATTATACCTCTC
14076876 ATGCTCATTT
Statistics
Matches: 216, Mismatches: 43, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
156 10 0.05
157 58 0.27
158 95 0.44
159 49 0.23
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGTGCATTATACCTCTCCGACCGGCTCAGCGTC
CGCACATCCATTTTATGGGTTGACTTAG
Found at i:14077832 original size:26 final size:26
Alignment explanation
Indices: 14077796--14077900 Score: 201
Period size: 26 Copynumber: 4.0 Consensus size: 26
14077786 TTTGGCTTAG
*
14077796 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14077822 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14077848 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14077874 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14077900 G
1 G
14077901 AGTTTGAGCC
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14078949 original size:26 final size:26
Alignment explanation
Indices: 14078919--14078971 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14078909 GTTGGCTTAG
14078919 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14078945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14078971 G
1 G
14078972 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14079259 original size:171 final size:172
Alignment explanation
Indices: 14078945--14079315 Score: 450
Period size: 171 Copynumber: 2.2 Consensus size: 172
14078935 CCATGTCTAA
* *
14078945 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGTGGTAGCAGGACCAG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCAAGGGTTGTGGTAGCAAGACCAG
* * * * *
14079008 TAGCAGGATCGACAGCATGCAGGGGGGGAGCTGGCCGATCCCCGGCTTGCGCATTCTACCTCTTC
65 CAGCAGGATCGACAACATGCAGAGGGGGAGCTGGCCGATCCCCGGCTTACGCATTATACCTCTTC
* *
14079073 GGTCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTTG
130 GGTCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * **
14079116 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGTAGCAAGACCAGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGTGGTAGCAAGACCAGC
* * ** *
14079180 AGC-GAGATCGGCAACATGCAGAGGGGGA-TTGGGTTGATCCCCGGCTTACGCATTATGCCTC-T
66 AGCAG-GATCGACAACATGCAGAGGGGGAGCT-GGCCGATCCCCGGCTTACGCATTATACCTCTT
* *
14079242 CTGG-CTAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 C-GGTC-AGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
14079287 GCATACAGAGTTCATTCCATGTTTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
14079316 TACGAAGTTC
Statistics
Matches: 171, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
170 8 0.05
171 160 0.94
172 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (172 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTTGTGGTAGCAAGACCAGC
AGCAGGATCGACAACATGCAGAGGGGGAGCTGGCCGATCCCCGGCTTACGCATTATACCTCTTCG
GTCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:14079327 original size:368 final size:343
Alignment explanation
Indices: 14078537--14079340 Score: 867
Period size: 368 Copynumber: 2.3 Consensus size: 343
14078527 TCTCTGGTCG
* * * * *
14078537 GCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * *
14078601 GCATGCGGAGTTCATTCCCAGTCTATGATCAGACCAGATCGAGGGTTGTGGCAACAGGATCGACA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAACAGGATCGACA
* * * * * * *
14078666 GCACGTAGGAGGGATCAGGCTGATCCTCGATTTGCGCATTCTACGTCTCCGACCGGCTGAGCGCC
130 GCACGCAGGAGGGAGCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTAAGCGCC
*
14078731 CCGCACGCTAGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
195 CCGCACGCTAGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
**
14078796 AACCGAGGTTTGTGGCAGCGGGATCGACAAAACACAGAGGGGGACCACGTCGATCCCCAGCTTGG
260 AACCGAGGTTTGTGGCAGCGGGATCGACAAAACACAGAGGGGGACCACGTCGATCCCCAGCTTAC
* *
14078861 GCATTTTGCCTCTCCGGCC
325 GCATTATGCCTCTCCGGCA
* *
14078880 GACTGAGCGCCCGCAGGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 G-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
14078945 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGACCAGTA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG-T-T-GT----GG--CA--A
* * * * * *
14079010 GCAGGATCGACAGCATGCAGGGGGGGAGCTGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGG
119 -CAGGATCGACAGCACGCA-GGAGGGAGCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGA
* **
14079075 TCGGCTAAGCG-CCCGCACGCTCA-TTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGT
182 CCGGCTAAGCGCCCCGCACGCT-AGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCATGT
* * * * * **
14079138 CTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGCAAGACCAGCAGCGAGATCGGCAACATGCAGAG
246 CTAAGCCCCAGCCGAACCGA-GGTT-T-GT-G---G--CAGC-G-G-GATCGACAAAACACAGAG
**** * * *
14079203 GGGGATTGGGTTGATCCCCGGCTTACGCATTATGCCTCTCTGGCTA
299 GGGGACCACGTCGATCCCCAGCTTACGCATTATGCCTCTCCGGC-A
* *
14079249 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTTTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
14079314 CATACGAAGTTCATTCCCAGTGTAAGA
66 CATACGGAGTTCATTCCCAGTCTAAGA
14079341 GTTTGAGCCA
Statistics
Matches: 379, Mismatches: 53, Indels: 33
0.82 0.11 0.07
Matches are distributed among these distances:
343 4 0.01
344 92 0.24
345 1 0.00
346 1 0.00
347 2 0.01
351 2 0.01
353 2 0.01
355 1 0.00
356 80 0.21
357 49 0.13
358 1 0.00
359 2 0.01
360 1 0.00
363 1 0.00
365 4 0.01
366 1 0.00
367 1 0.00
368 133 0.35
369 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (343 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAACAGGATCGACAG
CACGCAGGAGGGAGCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTAAGCGCCC
CGCACGCTAGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
ACCGAGGTTTGTGGCAGCGGGATCGACAAAACACAGAGGGGGACCACGTCGATCCCCAGCTTACG
CATTATGCCTCTCCGGCA
Found at i:14079339 original size:26 final size:26
Alignment explanation
Indices: 14079287--14079339 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14079277 GTTGGCTTAG
*
14079287 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTGTAA
14079313 GCATAC-GAAGTTCATTCCCA-GTGTAA
1 GCATACAG-AGTTCATT-CCATGTGTAA
14079339 G
1 G
14079340 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTGTAA
Found at i:14080046 original size:26 final size:26
Alignment explanation
Indices: 14080010--14080061 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14080000 GTTGACTTAG
14080010 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14080036 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14080062 AATTGGACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14080382 original size:26 final size:26
Alignment explanation
Indices: 14080353--14080405 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14080343 GTTGGCTTAG
14080353 GCATACGGAGTACATT-CCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
*
14080379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
14080405 G
1 G
14080406 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:14080585 original size:26 final size:26
Alignment explanation
Indices: 14080549--14080601 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14080539 GTTGGCTTAG
*
14080549 GCATGCGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
14080575 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
14080601 G
1 G
14080602 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:14081664 original size:26 final size:26
Alignment explanation
Indices: 14081614--14081666 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14081604 GTTGGCTTAG
*
14081614 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
14081640 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
14081666 G
1 G
14081667 ATCATACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:14081850 original size:26 final size:26
Alignment explanation
Indices: 14081810--14081862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14081800 GTTGGCTTAG
14081810 GCATACGGAGCTCA-TTCCATGTCTAA
1 GCATACGGAGCTCATTTCCA-GTCTAA
*
14081836 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGCTCATTTCCAGTCTAA
14081862 G
1 G
14081863 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTTCCAGTCTAA
Found at i:14082975 original size:158 final size:157
Alignment explanation
Indices: 14082457--14083031 Score: 527
Period size: 158 Copynumber: 3.6 Consensus size: 157
14082447 ACCACATGTT
* * * * * * ** * * *
14082457 CGATCTCCGGCTTGCGCATCCTGCCTCTCTAGTCGGCTGAGCGTCCGTATGCTCGTTTTGTGGGT
1 CGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCATGCTCATTTCGTGGGT
*
14082522 TGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAGA-TCGGA-TCGAGGGTTGCGGTAG
66 TGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGACT-GGACT-GAGGGTTGCGGCAG
* *
14082584 TAGGATCGGCATCACGCAGGGGGGA-CTGGGT
128 -AGGATCGGCAACACGCAGGGGGGATC-GGGC
* ** * * * * ** * *
14082615 CGAGCCTTGGCTTTCACATTCTACCTCTCCGGCTGGCTGAGTGCCCGCACGC-CTGTTTCGTGGG
1 CGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCATGCTC-ATTTCGTGGG
* * * * *
14082679 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCA-CAG-CCGGACCGAGGGTTGTGGCAG
65 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG--ATCAGACTGGACTGAGGGTTGCGGCAG
* * * *
14082742 AGGGATGGGCAATACACAGAGGGGGATCGAGC
128 A-GGATCGGCAACACGCAG-GGGGGATCGGGC
* * * * * * * *
14082774 CGATCCTCGACTTACGCATTATGCCTCTCCGGTCAGCTTAGCACCCGCATGCTCATTTCGTGGGT
1 CGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCATGCTCATTTCGTGGGT
** *
14082839 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATTGGACTGGACTGAGGGTTGCGACAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAG-AG
* *
14082903 GATCGACAGCACGCATGGGGGGATCGGGC
130 GATCGGCAACACGCA-GGGGGGATCGGGC
* * *
14082932 CGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCAAGCTCATTTTGTGGTT
1 CGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCATGCTCATTTCGTGGGT
*
14082997 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
14083032 CATACGGAGT
Statistics
Matches: 332, Mismatches: 70, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 231 0.70
159 94 0.28
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
CGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCATGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGAGG
ATCGGCAACACGCAGGGGGGATCGGGC
Found at i:14083041 original size:26 final size:26
Alignment explanation
Indices: 14083005--14083057 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14082995 TTTGGCTTAG
14083005 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14083031 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14083057 G
1 G
14083058 ATCAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14083901 original size:26 final size:26
Alignment explanation
Indices: 14083871--14083949 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
14083861 TTTAGCCTAG
14083871 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14083897 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14083923 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
14083949 G
1 G
14083950 ATTTTGAGCC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 49 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14085125 original size:26 final size:26
Alignment explanation
Indices: 14085095--14085147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14085085 TTTGGCTTAG
14085095 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14085121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14085147 G
1 G
14085148 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14085329 original size:26 final size:26
Alignment explanation
Indices: 14085281--14085331 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14085271 TGACTTAGGA
*
14085281 ATACAGAGTTCATCCCTAGTCTAAGC
1 ATACAGAGTTCATCCCTAATCTAAGC
*
14085307 ATACGGAGTTCATTCCC-AATCTAAG
1 ATACAGAGTTCA-TCCCTAATCTAAG
14085332 ATCAAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCTAATCTAAGC
Found at i:14085476 original size:184 final size:181
Alignment explanation
Indices: 14084936--14085476 Score: 629
Period size: 184 Copynumber: 2.9 Consensus size: 181
14084926 GTTGACTTAG
* * * * * *
14084936 GCATACGGAGTTAATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* ** * * *
14085001 GCACGCAAAGGGCGACCAAGCC-AGTCCCCGTCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCA
66 GCACGC--AGGGGGACCGGGCCGA-TCCCCG-CTTGCGCATTCTACCTCTCC-GCTGGCTGAGCG
* *
14085065 CCCGCACGCTCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
126 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
14085121 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTC-GCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTG-CGGCAGCAGGATCGGC
* * * *
14085185 AGCACGCAGGGTGGACTGGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGG-GGACCGGGCCGATCC-CCGCTTGCGCATTCTACCTCTCCGCT-GGCTGAGCGC
* * * *
14085250 CCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACAGAGTTCATCCC-TAGTCTAA
127 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCAT-GTCTAA
* * * * *
14085305 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGATCGAGGGTTGCGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * *
14085370 GTACGCAGGGGGAACCGGGCCGATCCCCAGCTTGCGCATTCTACCTTTCCAGCTGGCTGAGTGCC
66 GCACGCAGGGGG-ACCGGGCCGATCCCC-GCTTGCGCATTCTACCTCTCC-GCTGGCTGAGCGCC
** * * *
14085435 CGCATACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
128 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
14085477 ATCCATATCC
Statistics
Matches: 303, Mismatches: 43, Indels: 21
0.83 0.12 0.06
Matches are distributed among these distances:
183 10 0.03
184 224 0.74
185 68 0.22
186 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (181 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTACCTCTCCGCTGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:14085665 original size:158 final size:158
Alignment explanation
Indices: 14085305--14085805 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
14085295 CCTAGTCTAA
* * * * * *
14085305 GCATACGGAGTTCATTCCCA-ATCTAAGATCAAACCGG-ATCGAGGGTTGCGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGAAT-GAGGGTTGCAGCAGGAGGACCGA
* * * * * * * * * * * *
14085368 TAGTACGCA-GGGGGAACCGGGCCGATCCCCAGCTTGCGCATTCTACCTTTCCAGCTGGCTGAGT
64 CAGCACGCAGGGGGGATCC-GACTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
** * * *
14085432 GCCCGCATACCCATTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * ** * ** **
14085463 GCATAGGGAGTTCAATCCATATCCAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCG-GGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGAATGAGGGTTGCAGCAG-GAGGACCGA
*
14085526 CAGCACGCAGAGGGGGA-CCGACTGATCCCC-GACTTGTGCATTATGCCTCTCCGGCCGGCTCAG
64 CAGCACGCAG-GGGGGATCCGACTGATCCCCAG-CTTGCGCATTATGCCTCTCCGGCCGGCTCAG
* * *
14085589 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
14085621 GCATACGGAGTTCATTCCCAT-TCTAAGATCAGACCGGAATGAGGGTTGCAGCAGGAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGAATGAGGGTTGCAGCAGGAGGACCGAC
* * * * *
14085685 AGCACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGATCCGACTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGC
* *
14085750 CCGCACGCTCATTTTGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGACTTAG
14085779 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14085806 CATACGGAGT
Statistics
Matches: 274, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 18 0.07
158 241 0.88
159 9 0.03
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGAATGAGGGTTGCAGCAGGAGGACCGACA
GCACGCAGGGGGGATCCGACTGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:14085815 original size:26 final size:25
Alignment explanation
Indices: 14085779--14085830 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14085769 GTTGGCTTAG
14085779 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
14085805 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
14085830 G
1 G
14085831 ATTTTGGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:14086914 original size:159 final size:157
Alignment explanation
Indices: 14086525--14087100 Score: 572
Period size: 159 Copynumber: 3.6 Consensus size: 157
14086515 ACCACCCGTT
* * * * * * * * * ** *
14086525 CGATCCCCGGCTTGCGCATCCTGCCTCTCTG-GTCGGCTGAGCGCTCGTACGCTCATTTTGTAGG
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCGACT-GACTAAGCGCCCGCACGCTCGTTTCATGGG
* * *
14086589 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGA-TGGTTGCGGTAGC
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-TCAGATCGAGT-GTTGTGGTAGC
** * *
14086653 AGGATCGGTAGCACGCAGGGGGGATTGGGT
128 AGGATCGACAGCACGCAGGGGGGACTGGGC
* * * * *
14086683 CGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGACTGAGCACCCACACGCCCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGACTAAGCGCCCGCACGCTCGTTTCATGGGT
* ** *
14086748 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCAGATCGAGTGTTGTGGCAGC-
66 TGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGTCAGATCGAGTGTTGTGGTAGCA
*
14086811 GAGATCGACAGCACGCAGAGGGGGACCGGGC
129 G-GATCGACAGCACGCAG-GGGGGACTGGGC
* * * * *
14086842 CGATCCCCGGCTTACGCATTATGCCTCTCCGGCT-AGCTCAGCGCCCGCACGCTCGTTTCATGGG
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGA-CTAAGCGCCCGCACGCTCGTTTCATGGG
* * * * *
14086906 -TGGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGATAGC
65 TTGG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCAGATC-GAGTGTTGTGGTAGC
**
14086970 AGGATCGACAGCACAAAGGGGGGGACTGGGC
128 AGGATCGACAGCACGCA-GGGGGGACTGGGC
* * * * *
14087001 CAATCCCCTGCTTGCACATTCTACCTCTCCGACCGACTAAGCGCCCGCATGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGACTAAGCGCCCGCACGCTCGTTTCATGGGT
*
14087066 TGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAG
66 TGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
14087101 CATACGGAGT
Statistics
Matches: 346, Mismatches: 57, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.01
158 125 0.36
159 208 0.60
160 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGACTAAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCAGATCGAGTGTTGTGGTAGCAGG
ATCGACAGCACGCAGGGGGGACTGGGC
Found at i:14087124 original size:26 final size:26
Alignment explanation
Indices: 14087074--14087126 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14087064 GTTGGCTTAG
* *
14087074 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
14087100 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
14087126 G
1 G
14087127 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:14087385 original size:171 final size:172
Alignment explanation
Indices: 14087168--14087798 Score: 597
Period size: 171 Copynumber: 3.8 Consensus size: 172
14087158 ACCAGTAGCA
* * * *
14087168 GGATCGGTAGCACGTA-AGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCACTCCGACC
1 GGATCGGTAGCATGCAGA-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* *
14087232 GATC-AAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 GATCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
14087296 AGCCCTAGCTGGACCGAGGGTTGTGGTAGCAGGACTGGCAGCG
130 AGCCCTAGCTGGACCGAGGGTTGTGGTAGCAGGACTGGCAGCG
* * * * *
14087339 GGATCGGTAGCATGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCG
1 GGATCGGTAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
* * * *
14087404 A-CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTA
66 ATCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTA
* * ** * * *
14087467 AG-CATA--T-G---GA--GTTCAT--TCCCA-GTCTAAG-ATC-
130 AGCCCTAGCTGGACCGAGGGTT-GTGGTAGCAGGACT-GGCAGCG
* * ** *** * * * * * *
14087498 GGATCGG-ACCGAGGGTTGACTAGG-TCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGAC
1 GGATCGGTAGC-A-TGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * *
14087561 TGGTC-GAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCT
64 CGATCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
*
14087625 AAGCCCTAGCTGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCG
129 AAGCCCTAGCTGGACCGAGGGTTGTGGTAGCAGGACTGGCAGCG
* * * * *
14087669 GGATCGGCAGCATGCAGAGGGGGACCGAGCCGATCCCTGACTTGCACATTATTCCTCTCCGACCG
1 GGATCGGTAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
* * * * * *
14087734 -GCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGGCATATGCATACGGAGTTCATTCCATGTCTAA
66 ATCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
14087797 GC
131 GC
14087799 ATACGGAGTT
Statistics
Matches: 356, Mismatches: 78, Indels: 53
0.73 0.16 0.11
Matches are distributed among these distances:
158 2 0.01
159 91 0.26
160 18 0.05
161 4 0.01
162 4 0.01
163 2 0.01
164 2 0.01
166 2 0.01
167 2 0.01
168 4 0.01
169 3 0.01
170 71 0.20
171 148 0.42
172 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (172 bp):
GGATCGGTAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
ATCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCTAGCTGGACCGAGGGTTGTGGTAGCAGGACTGGCAGCG
Found at i:14087807 original size:26 final size:26
Alignment explanation
Indices: 14087771--14087823 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14087761 GTTGGCATAT
14087771 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14087797 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14087823 G
1 G
14087824 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14088455 original size:26 final size:26
Alignment explanation
Indices: 14088425--14088478 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14088415 GTTGACTTTG
14088425 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14088451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14088477 GC
1 GC
14088479 TCAAACTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14088911 original size:158 final size:158
Alignment explanation
Indices: 14088451--14089313 Score: 617
Period size: 158 Copynumber: 5.4 Consensus size: 158
14088441 CCCAGTCTAA
* * ** * *
14088451 GCATACGGAGTTCATTCCCAGTCTAAGCTCAAACTGGATCGAGGGTTATGGCAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
14088516 GCACACAGGGGGGACCGGGCCGAACCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACACAGGGGGGACCGGGCCGAACCCCAACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACC
* *
14088581 CGCACGCCTATTTCATCGGTTGGCTTAG
131 CGCACGCCTGTTTCATGGGTTGGCTTAG
* * * *
14088609 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGCGGGA-CCA
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-CTCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * * *
14088671 GTAGCACACAGAGGGGGACCGAGCCGATCCTCGACTTTCTCATTATGCCTCTCCGACCGGGTCAG
64 -CAGCACACAG-GGGGGACCGGGCCGAACCCCAACTTACGCATTCTGCCTCTCCGACCGGCTGAG
* * *
14088736 CACCCGCACGCTTGTTTCGTGGGTTGACTTAG
127 CACCCGCACGCCTGTTTCATGGGTTGGCTTAG
* * * * *
14088768 GCATA-TGAGGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATAGGGA-GTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
** * *
14088832 AGCATGCAGGGGGGACCGGGCCGAACCCCAACTTACGCATTCTGCCTCTTCGACTGGCTGAGCAC
65 AGCACACAGGGGGGACCGGGCCGAACCCCAACTTACGCATTCTGCCTCTCCGACCGGCTGAGCAC
*
14088897 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCCTGTTTCATGGGTTGGCTTAG
* * * *
14088926 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGTGGGTTGTGGCA-AAGGGA-CT
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCTC-AGACCAGACCGAGGGTTGTGGCAGCA-GGATC-
* ** * * * *
14088987 GGCAGCACGTAGAGGGGGACCGGGCC-AATACCCAACTTCCGTATTAC-GCCTCTCC-AGTCGGC
62 GACAGCACACAG-GGGGGACCGGGCCGAA-CCCCAACTTACGCATT-CTGCCTCTCCGA-CCGGC
* ** * * **
14089049 TCAGTGCCCGCACG-CTCATTTCTTTTGTTGAG-TTA-
123 TGAGCACCCGCACGCCT-GTTTCATGGGTTG-GCTTAG
** * * *
14089084 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACGGCAGCAAGACCAGCA
1 GCATAGGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTT---G-TG---G--CAGC-
* *** * * ** ** * *
14089149 GTAGGATCGACAGCACGCAAGGGGGGACCGATACGATCCTCGGCTTGTGCATTCTACCTCTCCGG
56 --AGGATCGACAGCACAC-AGGGGGGACCGGGCCGAACCCCAACTTACGCATTCTGCCTCTCCGA
* * * *
14089214 CTGGCTGAGCTCCCACACG-CTCGTTTCGTGGGTTGGCTTAG
118 CCGGCTGAGCACCCGCACGCCT-GTTTCATGGGTTGGCTTAG
* * *
14089255 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGCAGGA
1 GCATAGGGAGTTCATTCCCA-GTCTAAGCTC-AGACCAGACCGAGGGTTGTGGCAGCAGGA
14089314 CCGGTAGCGG
Statistics
Matches: 543, Mismatches: 119, Indels: 85
0.73 0.16 0.11
Matches are distributed among these distances:
157 12 0.02
158 210 0.39
159 190 0.35
160 7 0.01
161 1 0.00
162 5 0.01
164 1 0.00
165 1 0.00
167 3 0.01
168 1 0.00
169 2 0.00
170 68 0.13
171 40 0.07
172 2 0.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACACAGGGGGGACCGGGCCGAACCCCAACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACC
CGCACGCCTGTTTCATGGGTTGGCTTAG
Found at i:14089040 original size:317 final size:316
Alignment explanation
Indices: 14088450--14089307 Score: 968
Period size: 317 Copynumber: 2.7 Consensus size: 316
14088440 CCCCAGTCTA
* * * ** * ** *
14088450 AGCATACGGAGTTCATTCCCAGTCTAAGCTCAAACTGGATCGAGGGTTATGGCAGCAGGATCGAC
1 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAC
* * *
14088515 AGCACACAGGGGGGACCGGGCCGAACCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
66 AGCACGCAGGGGGGACCGGGCCGAACCCCAACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCAC
** * * *
14088580 CCGCACGCCTATTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
131 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
* ** * * * *
14088645 GACCAAGGGTTGTGGCAGCGGGACCAGTAGCACACAGAGGGGGACCGAGCCGATCCTCGACTTTC
196 GACCGAGGGTTGTGGCAAAGGGACCAGCAGCACACAGAGGGGGACCGAGCCAATCCTCAACTTCC
* * **
14088710 TCATTATGCCTCTCC-GACCGGGTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTT
261 TCATTACGCCTCTCCAG-CCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTT
* *
14088766 AGGCATA-TGAGGTTCATTCCCAGTCTTAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCG
1 A-GCATACAGA-GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCG
* * *
14088830 ACAGCATGCAGGGGGGACCGGGCCGAACCCCAACTTACGCATTCTGCCTCTTCGACTGGCTGAGC
64 ACAGCACGCAGGGGGGACCGGGCCGAACCCCAACTTGCGCATTCTGCCTCTCCGACTGGCTGAGC
14088895 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
129 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
* ** ** *
14088960 CGGACCGTGGGTTGTGGCAAAGGGACTGGCAGCACGTAGAGGGGGACCGGGCCAATACC-CAACT
194 CGGACCGAGGGTTGTGGCAAAGGGACCAGCAGCACACAGAGGGGGACCGAGCCAAT-CCTCAACT
* ** * ** *
14089024 TCCGT-ATTACGCCTCTCCAGTCGGCTCAGTGCCCGCACGCTCATTTCTTTTGTTGAGTT
258 TCC-TCATTACGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTT
*
14089083 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACGGCAGCAAGACCAGC
1 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT------GC--GA-CAGC
*** * * ** * *
14089148 AGTAGGATCGACAGCACGCAAGGGGGGACCGATACGATCCTCGGCTTGTGCATTCTACCTCTCCG
57 ---AGGATCGACAGCACGC-AGGGGGGACCGGGCCGAACCCCAACTTGCGCATTCTGCCTCTCCG
* * * * * *
14089213 GCTGGCTGAGCTCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
118 ACTGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
14089278 TAAGCCCTAGCCGGACCGAGGGTTGTGGCA
183 TAAGCCCTAGCCGGACCGAGGGTTGTGGCA
14089308 GCAGGACCGG
Statistics
Matches: 456, Mismatches: 67, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
316 44 0.10
317 263 0.58
318 4 0.01
322 2 0.00
324 2 0.00
325 4 0.01
328 15 0.03
329 122 0.27
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (316 bp):
AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGAC
AGCACGCAGGGGGGACCGGGCCGAACCCCAACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCAC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
GACCGAGGGTTGTGGCAAAGGGACCAGCAGCACACAGAGGGGGACCGAGCCAATCCTCAACTTCC
TCATTACGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTT
Found at i:14089468 original size:26 final size:26
Alignment explanation
Indices: 14089438--14089489 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14089428 GTTGACTTAG
* *
14089438 GCATACGGAGTTCATCCCCAACCTAA
1 GCATACGGAGCTCATACCCAACCTAA
*
14089464 GCATACGGAGCTCATACCCAATCTAA
1 GCATACGGAGCTCATACCCAACCTAA
14089490 AATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.19
Consensus pattern (26 bp):
GCATACGGAGCTCATACCCAACCTAA
Found at i:14089968 original size:26 final size:26
Alignment explanation
Indices: 14089938--14089990 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14089928 GTTGGCCTAT
14089938 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14089964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14089990 G
1 G
14089991 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14091148 original size:158 final size:159
Alignment explanation
Indices: 14090684--14091175 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 159
14090674 CGTACAAAGG
* ** * ** * * * *
14090684 TCATTCC-CAGTCTAAGATTGGACTGGATCGAGGGTTACGACAGTAGGATCGATAGCTCGAAGGG
1 TCATTCCATAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGG
* * * * * * * * *
14090748 GGGACCAGGCCGATCCCCTGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGTGGCCGTACGCTTG
66 GGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
*
14090813 TTTCGTGGGTTGGCTTAGGCATAGGGAGT
131 TTTCGTGGGTTGGCTTAGGCATACGGAGT
***** * * * * *
14090842 TCATTCCAT-GTCTAAGCCCCCAGCCAGATCGAGAGATGTGGTAGCGGGATCGACAGCACGTATA
1 TCATTCCATAGTCTAAGATTGGA-CCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTA-G
* * * * * * * * *
14090906 GGGGGATCGGG-TCGATCCCCGGTTTGTGCATTATGCCTCTCCGACTGGCTCAGCGCCCTCACGC
64 GGGGGACCGGGCT-GATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
* *
14090970 TCGTTTCGTGGGTTGACTTAGGCATATGGAGT
128 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
14091002 TCATT-CATAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCTACAGCACGTAGGG
1 TCATTCCATAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGG
* *
14091066 GGGACCGGGCTGATGCCCAGCTTG-GCAATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTC
66 GGGACCGGGCTGATCCCCAGCTTGCGC-ATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC
* * *
14091130 ATTTCATGGGTTGGCTTAGGCAAACGGAGT
130 GTTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
14091160 TCAATCCA-CGTCTAAG
1 TCATTCCATAGTCTAAG
14091176 CATACGGAGT
Statistics
Matches: 259, Mismatches: 67, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 102 0.39
159 66 0.25
160 89 0.34
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TCATTCCATAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGG
GGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGT
Found at i:14091321 original size:184 final size:184
Alignment explanation
Indices: 14090991--14091405 Score: 518
Period size: 184 Copynumber: 2.3 Consensus size: 184
14090981 GTTGACTTAG
* ** * * * * *
14090991 GCATATGGAGTTCATTCATAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCTACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
* *
14091056 GCACGTAGGGGGGACCGGGCTGATGCCCAGCTTGGCAATTCTGCCTCTCCGGCCAGCTGAGCGCC
66 GCACGTAGGGGGGACCGGGCTGATGCCCAGCTTCGCAATTCTACCTCTCCGGCCAGCTGAGCGCC
14091121 CGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
131 CGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
* *
14091175 GCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CCAGACCGACGGTTGTGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGGCAACAGGATCGAC
* * * *
14091239 AGTACGTAGGGGGGACCGGG-TCGAT-CCTC-GACTTACG-TATTCTACCTCTCCGGTCGGCTGA
65 AGCACGTAGGGGGGACCGGGCT-GATGCC-CAG-CTT-CGCAATTCTACCTCTCCGGCCAGCTGA
* * ** * * *
14091300 GTGCCTGCACTG-TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
126 GCGCCCGCAC-GCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
*
14091359 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
14091406 ATGGTAGCTA
Statistics
Matches: 199, Mismatches: 25, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
183 6 0.03
184 189 0.95
185 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
GCACGTAGGGGGGACCGGGCTGATGCCCAGCTTCGCAATTCTACCTCTCCGGCCAGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGGAGTTCAATCCACGTCTAA
Found at i:14091363 original size:26 final size:26
Alignment explanation
Indices: 14091333--14091385 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14091323 GTTGGCTTAG
14091333 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14091359 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14091385 G
1 G
14091386 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14092213 original size:157 final size:156
Alignment explanation
Indices: 14091738--14092226 Score: 441
Period size: 159 Copynumber: 3.1 Consensus size: 156
14091728 CCCAGTCTAA
* * ** * **
14091738 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGTAGTAGGATTGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATTGACA
* * *
14091803 GCACGC-GGGGGGA-TGGGCCGATCC-CGGCTTACGCATTTTGCCTCTCCGACCGGCTGAGTGCC
66 GCACGCAGGGGGGACT-GGCCGATCCTC-GCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCC
* * * *
14091865 CGCACGCCCATTTCGTGGGTTAGTTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * ***
14091893 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGACCAA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGTAGGATTGA
* * * * * * *
14091956 CAGCATGCAGAGGGGGACCGGGCCGAT-CTCCGGTATGCGTATTATGCCTCTTCGATCAGCTTAG
64 CAGCACGCAG-GGGGGA-CTGGCCGATCCT-CGCT-TGCGCATTATGCCTCTCCGATCGGCTGAG
** * * *
14092020 CACCCGCACGCTCGTTTTGTGGGTTGACTTAT
125 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14092052 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATTGACA
* * * *
14092117 GCCCGCAGGGGGGACTGACCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
66 GCACGCAGGGGGGACTGGCCGATCCTCG-CTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCC
* *
14092182 GCGCTCTCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
14092209 GCATACGAAGTTAATTCC
1 GCATACGAAGTTCATTCC
14092227 ATGCCTAAGC
Statistics
Matches: 254, Mismatches: 67, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
154 3 0.01
155 45 0.18
156 4 0.02
157 80 0.31
158 21 0.08
159 98 0.39
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATTGACA
GCACGCAGGGGGGACTGGCCGATCCTCGCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14092347 original size:11 final size:11
Alignment explanation
Indices: 14092331--14092355 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14092321 CCCGAGGCAC
14092331 CATCGTCGGAG
1 CATCGTCGGAG
14092342 CATCGTCGGAG
1 CATCGTCGGAG
14092353 CAT
1 CAT
14092356 TACCGGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14092970 original size:26 final size:26
Alignment explanation
Indices: 14092941--14092993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14092931 GTTGACTTAG
14092941 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
14092967 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
14092993 G
1 G
14092994 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:14094173 original size:316 final size:317
Alignment explanation
Indices: 14093562--14094298 Score: 761
Period size: 316 Copynumber: 2.3 Consensus size: 317
14093552 CAATCCTTGG
* * * * * * ** * * *
14093562 CTTGCGTATTCTGCCTCTCTGGTCGATTGAGCACCCTTATGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGATCGACTGAACGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGC
* ** *
14093627 ATACAGAGTTCATTCCATGTCTAAGCCCCAATTGGACCGAGGGTTGTGGCAGCAGGACCAACAAC
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGGGGGTTGT-G--GCA-G--------C
*
14093692 GGGATCGACAACACGTAGAGAGGGATCGGGCTGATCCTCGGCTTGTGCATTATGACTCTCCAGCC
119 GGGATCGACAACACGTAGAGAGGGATCGGGCTGATCCTCGGCTTGCGCATTATGACTCTCCAGCC
* * * *
14093757 GACTGAGTGCCCACACGCTCGTTTCGAGGGTTGACTTAGGCACACGGAGTTCATCCCCACTCTAA
184 GACAGAGTGCCCACAC-CTCATTTCGAGGGTTGACTTAGGCACACGGAATTCATCCCCAATCTAA
* * *
14093822 GATCAGACCGGACTGAGGGTTGCGACAGTAGGATCGACAGCACGCA-GG-GGGACCAAGCCGATC
248 GATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGAGGGACCAAGCCGATC
14093885 CCCGA
313 CCCGA
* * * * *
14093890 CTTGCGTATTCTGCCTCTTCGATCGGCT-AA-GCACCTGCATGCCCATTTTGTGTGTTGGCTTAG
1 CTTGCGCATTCTGCCTCTCCGATCGACTGAACGC-CC-GCATGCCCATTTCGTGGGTTGGCTTAG
* * **
14093953 TCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGGGGGTTGTGGCAGCGGGATCGGTA
64 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGGGGGTTGTGGCAGCGGGATCGACA
* * * * *
14094018 ACACGTAGAGAGGGATCGAG-TCGATCCTCGGCTTGCGCATTATG-CTTCTTCGGCCGGTTCAGC
129 ACACGTAGAGAGGGATCGGGCT-GATCCTCGGCTTGCGCATTATGAC-TCTCCAGCC-G-ACAGA
* * * * * * * *
14094081 GTGCGCACA-CTCATTTTGTGGGTTGACTTATGCATACGGAATTTATTCCCAATCTAAGATCGGA
190 GTGCCCACACCTCATTTCGAGGGTTGACTTAGGCACACGGAATTCATCCCCAATCTAAGATCAGA
* * *** *
14094145 TCAGACCGAGGGTTGC-AGTAGCAGGATCGACAGCACGCAGGGAGGGACTGGGCCGATCCTCGA
255 CCAGACCGAGGGTTGCGA-CAGCAGGATCGACAGCACGCAGGGAGGGACCAAGCCGATCCCCGA
*
14094208 CTTGCGCATTCTGCCTCTCCGATCGACTGAACGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGATCGACTGAACGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGC
*
14094273 ATACGGAGTTCATTCGATGTCTAAGC
66 ATACGGAGTTCATTCCATGTCTAAGC
14094299 ATACAGAGTT
Statistics
Matches: 340, Mismatches: 58, Indels: 32
0.79 0.13 0.07
Matches are distributed among these distances:
315 3 0.01
316 133 0.39
317 3 0.01
318 100 0.29
319 4 0.01
320 2 0.01
324 1 0.00
325 3 0.01
326 1 0.00
327 4 0.01
328 86 0.25
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (317 bp):
CTTGCGCATTCTGCCTCTCCGATCGACTGAACGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGGGGGTTGTGGCAGCGGGATCGACAAC
ACGTAGAGAGGGATCGGGCTGATCCTCGGCTTGCGCATTATGACTCTCCAGCCGACAGAGTGCCC
ACACCTCATTTCGAGGGTTGACTTAGGCACACGGAATTCATCCCCAATCTAAGATCAGACCAGAC
CGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGAGGGACCAAGCCGATCCCCGA
Found at i:14094296 original size:159 final size:157
Alignment explanation
Indices: 14093693--14094297 Score: 423
Period size: 159 Copynumber: 3.8 Consensus size: 157
14093683 ACCAACAACG
* * * * * *
14093693 GGATCGACAACACGTAGAGAGGGATCGGGCTGATCCTCGGCTTGTGCATTATGACTCTCC-AGCC
1 GGATCGACAACACGCAGAGAGGGATCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGA-CC
** * * * * * *
14093757 GACTGAGTGCCCACACGCTCGTTTCGAGGGTTGACTTAGGCACACGGAGTTCATCCCCACTCTAA
65 GACTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAA
* *
14093822 GATCAGACCGGACTGAGGGTTGCGACAGTA
129 GATCAGACCGGACCGAGGGTTGCG-CAGCA
* * * * * * * *
14093852 GGATCGACAGCACGCAG-G-GGGACCAAGCCGATCCCCGACTTGCGTATTCTGCCTCTTCGATCG
1 GGATCGACAACACGCAGAGAGGGATCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCG
* * * * * * * *
14093915 GCT-AA-GCACCTGCATGCCCATTTTGTGTGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTA
66 ACTGAACGC-CC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTA
** * * * *
14093978 AGCCCCAG-CTGGACCGGGGGTTGTGGCAGCG
128 AG-ATCAGACCGGACCGAGGGTTG-CGCAGCA
** * * * * * *
14094009 GGATCGGTAACACGTAGAGAGGGATCGAGTCGATCCTCGGCTTGCGCATTATGCTTCTTCGGCCG
1 GGATCGACAACACGCAGAGAGGGATCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCG
** * * ** * * * * * *
14094074 GTTCAGCGTGCGCACACTCATTTTGTGGGTTGACTTATGCATACGGAATTTATTCCCAATCTAAG
66 ACTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
* * * *
14094139 ATCGGATCAGACCGAGGGTTGCAGTAGCA
130 ATCAGACCGGACCGAGGGTTGC-GCAGCA
* * * * *
14094168 GGATCGACAGCACGCAGGGAGGGA-CTGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGATC
1 GGATCGACAACACGCAGAGAGGGATC-GAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACC
* * *
14094232 GACTGAACGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
65 GACTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAA
14094297 G
129 G
14094298 CATACAGAGT
Statistics
Matches: 327, Mismatches: 104, Indels: 30
0.71 0.23 0.07
Matches are distributed among these distances:
155 2 0.01
156 6 0.02
157 98 0.30
158 12 0.04
159 203 0.62
160 5 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GGATCGACAACACGCAGAGAGGGATCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCG
ACTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCGCAGCA
Found at i:14094300 original size:26 final size:26
Alignment explanation
Indices: 14094271--14094349 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
14094261 GTTGGCTTAG
* *
14094271 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
14094297 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
14094323 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
14094349 G
1 G
14094350 ATCAGACCGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:14095918 original size:26 final size:26
Alignment explanation
Indices: 14095888--14095940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14095878 GTTGACTTAG
*
14095888 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14095914 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14095940 G
1 G
14095941 ATCATACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14096790 original size:159 final size:158
Alignment explanation
Indices: 14096428--14096858 Score: 420
Period size: 159 Copynumber: 2.7 Consensus size: 158
14096418 CCTAGTCCAA
* * *
14096428 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGTTGCGGCAACAGGATCGGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGGT
* * * *** * *
14096492 AGCACGCA-AGGGGGACCGAGCCAATCCCCGACTTGCACATTCTGCCTCTTCGGTTGGCTGAGCG
64 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCAGCTCAACG
**
14096556 CCCACACACCCGTTTCGTGGGCTGGCTTAG
129 CCCACACACCCGTTTCGTGGGCTAACTTAG
* * ** * * * *
14096586 GCATAGGGAGATCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGT
*
14096650 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTCAACG
64 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCAGCTCAACG
** * * * *
14096715 CCCGGACGCTCGTTTCGTGGGTTAACTTAT
129 CCCACACACCCGTTTCGTGGGCTAACTTAG
* * * * * *
14096745 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACTAAGGGTTACGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * *
14096810 GCACGTAGTGCGGGACTGGGTCGGTCCCC-AGCTTGCGCATTCTGCCTCT
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCT
14096859 CCGGTAGGCT
Statistics
Matches: 217, Mismatches: 49, Indels: 13
0.78 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 56 0.26
159 157 0.72
160 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAG
CACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCAGCTCAACGCC
CACACACCCGTTTCGTGGGCTAACTTAG
Found at i:14096935 original size:26 final size:26
Alignment explanation
Indices: 14096904--14096956 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14096894 GTTGGCCTAG
14096904 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
14096930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14096956 G
1 G
14096957 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14098018 original size:159 final size:157
Alignment explanation
Indices: 14097652--14098027 Score: 393
Period size: 159 Copynumber: 2.4 Consensus size: 157
14097642 AAGCATATGA
* * * *
14097652 AGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGCAGCACGCAAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGCAGCACGCAAG
* * * * * * * *
14097717 AGGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGCCC
66 AGGGACAGAACCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCACACGCCC
* **
14097782 GTTTCGTGGGTTGGCTTAGGCATAGGG
131 GTTTCGTGGGTTGACTTAGGCATACAG
** *
14097809 AGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGCAGGACCAGCAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAGGACC-GCAGCACGC
* * *
14097872 -AGAAGGGGATCAG-GCCGATCCTCGACTTACGCATTATGCCTCTTCGA-CTGGCTCAGCGCCCA
63 AAG-A-GGGA-CAGAACCGATCCCCGACTTACGCATTATGCCTCTCCGATC-GGCTCAGCGCCCA
* *
14097934 CACGCTCGTTTCGTGGGTTGACTTATGCATACAG
124 CACGCCCGTTTCGTGGGTTGACTTAGGCATACAG
* * * * *
14097968 AGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGCGGCAACAGGATCGACAGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGACCG-CAGCA
14098028 AGTAGGGGAC
Statistics
Matches: 178, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
156 3 0.02
157 40 0.22
158 17 0.10
159 113 0.63
160 5 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGACCGCAGCACGCAAG
AGGGACAGAACCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCACACGCCC
GTTTCGTGGGTTGACTTAGGCATACAG
Found at i:14098662 original size:26 final size:26
Alignment explanation
Indices: 14098633--14098685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14098623 GTTGACTTAG
*
14098633 GCATATGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
14098659 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14098685 G
1 G
14098686 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14099877 original size:26 final size:26
Alignment explanation
Indices: 14099826--14099878 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14099816 GTTGACTTAG
* *
14099826 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
14099852 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
14099878 G
1 G
14099879 ATCGAATCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:14100118 original size:155 final size:157
Alignment explanation
Indices: 14099852--14100191 Score: 377
Period size: 155 Copynumber: 2.2 Consensus size: 157
14099842 CCCAGTCTAA
* * * *
14099852 GCATACGGAGTTCATTCCTAGCCTAAGATCGAATCTAATCGAGGGTTCTGATAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCTAATCGAGGGTTCTGACAGCAAGATCGACA
** * * * ** * *
14099917 GTACGTAGGGGGGACCGGGCGTATCCCCGACTTGCTTATTCTGCCTCTCCGGCTGGCTCAGCGCC
66 ACAAGCAGGGGGGACCGGGCGTATCCCCGACTTACGCATTCTGCCTCTCCAGCCGGCTCAGCGCC
* *
14099982 C-ACGCTCATTTTATGGGTTGACTTAG
131 CGACACTCATTTCATGGGTTGACTTAG
* * *
14100008 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-AGA-CGAGGGTTGC-GACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCTA-ATCGAGGGTT-CTGACAGCAAGATCGA
* * *
14100070 CAACAAGCAGGGGGGACTGGGC-TGGTCCCCGACTTACGCATTCTGCCTCTCCAGCCGGCTGAGC
64 CAACAAGCAGGGGGGACCGGGCGT-ATCCCCGACTTACGCATTCTGCCTCTCCAGCCGGCTCAGC
* * *
14100134 GCCCGTACACTCGTTTCGTGGGTTGGCTTAG
128 GCCCG-ACACTCATTTCATGGGTTGACTTAG
14100165 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
14100192 CCCTAGCTGG
Statistics
Matches: 154, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
154 1 0.01
155 74 0.48
156 36 0.23
157 43 0.28
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCTAATCGAGGGTTCTGACAGCAAGATCGACA
ACAAGCAGGGGGGACCGGGCGTATCCCCGACTTACGCATTCTGCCTCTCCAGCCGGCTCAGCGCC
CGACACTCATTTCATGGGTTGACTTAG
Found at i:14100365 original size:26 final size:26
Alignment explanation
Indices: 14100336--14100388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14100326 GTTGACATAG
*
14100336 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14100362 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14100388 G
1 G
14100389 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14100751 original size:26 final size:26
Alignment explanation
Indices: 14100715--14100765 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14100705 TTGACTTGGG
*
14100715 CATACAGAGTTCATCCCCAGTCTAAT
1 CATACAGAGTTAATCCCCAGTCTAAT
* * *
14100741 CATACGGAGTTAATTCCTAGTCTAA
1 CATACAGAGTTAATCCCCAGTCTAA
14100766 GATTAGACCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTAATCCCCAGTCTAAT
Found at i:14100872 original size:366 final size:362
Alignment explanation
Indices: 14100077--14100928 Score: 865
Period size: 366 Copynumber: 2.3 Consensus size: 362
14100067 CGACAACAAG
* * * * * *
14100077 CAGGG-GGGACTGGGCTGGTCCCCGACTTACGCATTCTGCCTCTCC-AGCCGGCTGAGCGCCCGT
1 CAGGGAGGGACTAGGCTGATCCTCGACTTACGCATTCTGCCTCTCCGA-TCGGCTGAGAGCCCGC
* * *
14100140 ACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACT
65 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACC
* *
14100205 GAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCAACAGCACGCAGAAGAGGATCGAGCTGATCCC
130 AAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAACAGCACGCAGAAGAGGATCGAGCTGATCCC
* * * * * *
14100270 TGGCTTACGCATTATGTATCTCCGGCCAGTTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACATA
195 TGGCTTACGCAATATGCATCTCCGGCCAGCTGAGTGCCCGCACGCTCATTCCGTGGGTTGACATA
* * *
14100335 GGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAA
260 GGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCGAA
* * *
14100400 CTGAGGGTTGCGGCAGCAGGATCGCAGCAAGATCTGTAGCAT
325 CCGAGGGTTGCAGCAGCAAGATCGCA-CAAGA-C--TAGCAT
* * ** ** * *
14100442 GCAGGGAGGGACTAGGCTGATCCTTGGCTGGCATATTCTGCCT-TCCGATTGGCTGAGTGCCCGC
1 -CAGGGAGGGACTAGGCTGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGAGCCCGC
* * * *
14100506 ACACTCATTTCATGGGTTGACCTAGGCGTACGGAGTTCATTCCATGTGC-AAGCCCCAG-TCGGA
65 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGT-CTAAGCCCCAGCT-GGA
* * * *
14100569 CCAAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGGGGGATCGAGCTGATC
128 CCAAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAACAGCACGCAGAAGAGGATCGAGCTGATC
* * *
14100634 CC-GGCTTGCGCAATATGCCTCTCCGGCCGACCTCTCTTGCCGGCTGAGTG-TCGACACGCTCAT
193 CCTGGCTTACGCAATATGCATCTCCGGCC-A------------GCTGAGTGCCCG-CACGCTCAT
* * * * *
14100697 TCCGTGGGTTGACTTGGGCATACAGAGTTCATCCCCAGTCTAATCATACGGAGTTAATTCCTAGT
244 TCCGTGGGTTGACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTCCCAGT
* * *
14100762 CTAAGATTAGACCGGACCGAGGGTTGCAGCAGCAAGATCG-A-TAG-C-A-CAT
309 CTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAAGATCGCACAAGACTAGCAT
* *
14100811 -A-GG-GGGA-TCAGGTTGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGATGAGAGCCCGC
1 CAGGGAGGGACT-AGGCTGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGAGCCCGC
* * **
14100872 ACGCTCGTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCCACATCTAAGCCCCA
65 ACACTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
14100929 ATCGGATCGA
Statistics
Matches: 397, Mismatches: 67, Indels: 44
0.78 0.13 0.09
Matches are distributed among these distances:
364 1 0.00
365 52 0.13
366 199 0.50
367 30 0.08
369 3 0.01
370 1 0.00
373 1 0.00
375 2 0.01
377 3 0.01
378 105 0.26
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (362 bp):
CAGGGAGGGACTAGGCTGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGAGCCCGCA
CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCA
AGGGTTGTGGCAGCAGGACCAGCAGCGGGATCAACAGCACGCAGAAGAGGATCGAGCTGATCCCT
GGCTTACGCAATATGCATCTCCGGCCAGCTGAGTGCCCGCACGCTCATTCCGTGGGTTGACATAG
GCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCGAAC
CGAGGGTTGCAGCAGCAAGATCGCACAAGACTAGCAT
Found at i:14101242 original size:26 final size:26
Alignment explanation
Indices: 14101212--14101264 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14101202 GTTGGCTTAG
14101212 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
14101238 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14101264 G
1 G
14101265 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:14101720 original size:157 final size:157
Alignment explanation
Indices: 14101433--14101774 Score: 382
Period size: 157 Copynumber: 2.2 Consensus size: 157
14101423 CCCAGTCTAA
* * * * *
14101433 GCATACGGAGTTCAATCCCAGCCTAAGATCGAACTGGAATGAGGGTTGCGGTAGCGAGATCGACA
1 GCATACGGAGTTC-ATTCCAGTCTAAGATCGAACTCGAACGAGGGTTGCGGTAGCAAGATCGACA
* * * * *
14101498 ACACGCAGGGAGGACCGGGTCGATCCCCGGCATGCCCATTCTACCTCTTCAGCTGGCTCAGCGCC
65 ACAAGCAGGGAGGACCGGGTCGATCCCCGGCATACCCATTCTACCTCTCCAGCCGACTCAGCGCC
* *
14101563 CGCATGCTCATTTGGTGGGTTGACTTAG
130 CGCACGCTCATTTCGTGGGTTGACTTAG
*
14101591 GCATACGGAGTTCATTCCAGTCTAAGATCGGA-TCGAACGAGGGTTGCGGTAGCAAGATCGACAA
1 GCATACGGAGTTCATTCCAGTCTAAGATCGAACTCGAACGAGGGTTGCGGTAGCAAGATCGACAA
* * * * * * * * *
14101655 TAAGCAAGGGGGGACTGGGTTGGTCCCCGGCTTACGCATTCTGCCTCTCC-GACCGACTGAGCGC
66 CAAGC-AGGGAGGACCGGGTCGATCCCCGGCATACCCATTCTACCTCTCCAG-CCGACTCAGCGC
** *
14101719 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGACTTAG
***
14101748 GCATATAAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
14101775 CCCCAGCCGG
Statistics
Matches: 153, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
156 33 0.22
157 100 0.65
158 20 0.13
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAACTCGAACGAGGGTTGCGGTAGCAAGATCGACAA
CAAGCAGGGAGGACCGGGTCGATCCCCGGCATACCCATTCTACCTCTCCAGCCGACTCAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:14102531 original size:367 final size:359
Alignment explanation
Indices: 14101656--14102537 Score: 857
Period size: 368 Copynumber: 2.4 Consensus size: 359
14101646 GATCGACAAT
* * * * *
14101656 AAGCAAGGGGGGACTGGGTTGGTCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCC
1 AAGC-AGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGA-CGGCTGAGCGCCC
* *** *
14101721 GCACGCTTGTTTCGTGGGTTGGCTTAGGCATATAAAGTTCATTCCATGTCTAAGCCCCAGCCGGA
64 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
* * * *
14101786 TCGGAGGTTGTGGCAGCAGGATCGGCAGCTGGATCAGCAGCACAGAGAAGGGGATCGAGCTAATC
129 TCGGGGGTTGTGGCAGCAAGATCGACAGCGGGATCAGCAGCACAGAGAAGGGGATCGAGCTAATC
* * * * * *
14101851 CCTGGCTTACGCATTATGCCTTTCCGGCCGGTTGAGCACCCTCACGCTCGTTTTGTGGGTTGACA
194 CCTAGCTTACGCATTATGCCTTTCCGGCCGGTCGAGAACCCACACGCTCATTTCGTGGGTTGACA
* * * *
14101916 TAGGCATATGGAGTTCATCCCTAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAGACAG
259 TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAG
* * *
14101981 GACCGAGGGTTACGGTAGTAGGACCAGTAGCAGGATCGGCAGC
324 GA-C-A--GTGAAGGTA-TA-GA-CAGCAGCAGGATCGGCAGC
* * * * * * *
14102024 AAGTAGGAGGGGATCAGG-CTGATCCTCGACTTACGCATTCTGCCTCTCTGACTAGCTGAGTGCC
1 AAGCAGG-GGGGACCGGGTC-GATCCTCGGCTTACGCATTCTGCCTCTCCGAC-GGCTGAGCGCC
* * * * * *
14102088 CGCACGTTCGTTTCGTGAGTTGACTTAGGCGTACGGAGTTCATTCCATGTCCAAGCCCCAGTCAG
63 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* ** * *
14102153 ACCAAGGGTTGTGGTAGCAAGA-CTGACAGCGGGATC-GACAGCAC-GCAG-AGGGGATCGGGCT
128 ATCGGGGGTTGTGGCAGCAAGATC-GACAGCGGGATCAG-CAGCACAG-AGAAGGGGATCGAGCT
* * * *
14102214 GATCCCTAGCTTGCGCATTATGCTTCTTCGATCGGCCTCTCTTGTCGACTGAATGCCCACACGCT
190 AATCCCTAGCTTACGCATTATGCCT-TTC---CGG---C-C-GGTCGA--GAA--CCCACACGCT
* * * *
14102279 CATTTCGTGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATGCGAAGTTCATTCTC
242 CATTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCC
* * * * *
14102344 GGTCTAAGATTAGACTGGA-A-TGAAGGT-T-G-CGGCAGCAGGATCGGTAGC
307 AGTCTAAGATCAGACAGGACAGTGAAGGTATAGACAGCAGCAGGATCGGCAGC
* *
14102392 ACGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCTCG
1 AAGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGA-CGGCTGAGCGCCCG
* * * *
14102457 CACGCCCGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAT
65 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAT
14102522 CGGGGGTTGTGGCAGC
130 CGGGGGTTGTGGCAGC
14102538 GATACCGGCA
Statistics
Matches: 412, Mismatches: 81, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
367 154 0.37
368 159 0.39
370 1 0.00
371 3 0.01
372 1 0.00
374 6 0.01
375 1 0.00
376 4 0.01
377 1 0.00
378 2 0.00
380 80 0.19
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (359 bp):
AAGCAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC
GGGGGTTGTGGCAGCAAGATCGACAGCGGGATCAGCAGCACAGAGAAGGGGATCGAGCTAATCCC
TAGCTTACGCATTATGCCTTTCCGGCCGGTCGAGAACCCACACGCTCATTTCGTGGGTTGACATA
GGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGA
CAGTGAAGGTATAGACAGCAGCAGGATCGGCAGC
Found at i:14103299 original size:159 final size:157
Alignment explanation
Indices: 14102902--14103640 Score: 528
Period size: 159 Copynumber: 4.7 Consensus size: 157
14102892 TCTACAACAT
* * * * **
14102902 GCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTAGCCTTTTGCCCGC
1 GCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCT-GGC-TCAGCCCGC
* * * *
14102966 ACACCCGTTTCGTGGGTCGGCTTAGGCATACGGAGTTT-ATTCCATGTCTAAGCCCCAGCCGGAC
64 ACGCCCGTTTAGTGGGTTGGCTTAGGCATACGGA-TTTCATTCCATGTCTAAGCCCCAACCGGAC
*
14103030 CGAGGGTTGTGGCAGTGGGACCGACAGCAC
128 CGAGGGTTGTGGCAGCGGGACCGACAGCAC
* * * * * **
14103060 GCATAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTTCAGCTAGATCAATGCCCAT
1 GCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTC-A-GCCCGC
* * * *
14103125 ACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAATCGGACT
64 ACGCCCGTTTAGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCCAACCGGACC
*
14103190 GAGGGTTGTGGTAGCGGGACCGACAGCAC
129 GAGGGTTGTGGCAGCGGGACCGACAGCAC
* * *
14103219 GCAGATGGGGACTGGGCCGATCCTCGGCTTGCGCATTATACCTCTTCGGCTGGCTCAGCACCCGC
1 GCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAG--CCCGC
* * * * * * ** *
14103284 ACGCTCATTTAGTGGGTTGACTTATGCATACGAAATTCATTCCCA-GTCTAAG-ATCAGACTGGA
64 ACGCCCGTTTAGTGGGTTGGCTTAGGCATACGGATTTCATT-CCATGTCTAAGCCCCA-ACCGGA
** * * *
14103347 CCGAGGGTTACGACAGCAGGATCGACAGCAC
127 CCGAGGGTTGTGGCAGCGGGACCGACAGCAC
** * * * * * * * * *
14103378 ATAG-GGGGGATCGAGTCGATCCCCGGCTTACG-ATTCTGCCTC-TCTGATCGGCTCAGTGCTCG
1 GCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCT-GGCTCA--GCCCG
* * * * * * * ** **
14103440 AACGCTCGTTTCGTGGGTTGACTTAGGCGTACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGA
63 CACGCCCGTTTAGTGGGTTGGCTTAGGCATACGGATTTCATT-CCATGTCTAAGCCCCAACCGGA
* * * * *
14103504 CTGAGGGTTGCGGCAACAGGATCGACAGCAC
127 CCGAGGGTTGTGGCAGCGGGACCGACAGCAC
* * * * * * * * * *
14103535 GCAG-GGGGGACCGGGCTGGTCCTCGACTTGTGCTTTCTACCTC-TCTGATCGGCTGAGCGCCCG
1 GCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCT-GGCTCA--GCCCG
* * *
14103598 CACGCTCGTTTCA-TGGATTGGCTTAGGCATACGGAGTTCATTC
63 CACGCCCGTTT-AGTGGGTTGGCTTAGGCATACGGATTTCATTC
14103641 ACAATCTATG
Statistics
Matches: 465, Mismatches: 102, Indels: 29
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 120 0.26
158 90 0.19
159 248 0.53
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCCCGCAC
GCCCGTTTAGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCCAACCGGACCGA
GGGTTGTGGCAGCGGGACCGACAGCAC
Found at i:14104553 original size:158 final size:156
Alignment explanation
Indices: 14104087--14104588 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 156
14104077 CCTGGTCTAA
* *
14104087 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTACAGCAGCAGGATCGGC
1 GCATAC-GAGTTCATT-CCATGTCTAAGATCAGATAGGACTGAGGGTTGCAGCAGCAGGATCGGC
* * *
14104151 AGCACGCAGGGGGGATCGAGCGCATCCCTGGCTTACGCATTCTGCCT-TTTCGA-TCGGTTGAGC
64 AGCACGCAGGGGGGATCGACCG-ATCCCCGGCTTACGCATTCTGCCTCTCT-GACT-GGTTGAGC
* *
14104214 GCCCACACGCCCGTTTCATGGGTTGGCTTAG
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * ** * *
14104245 GC-TAAGGGAGTTCATTCCATGTCTAAGCCCTAG-CAGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCAT-A-CGAGTTCATTCCATGTCTAAGATC-AGATAGGACTGAGGGTTGCAGCAGCAGGATCGG
* * * * * * * *
14104308 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCTCATTATGCCTCTCTGGCCGGTTCAGC
63 CAGCACGCAG-GGGGGATC-GACCGATCCCCGGCTTACGCATTCTGCCTCTCTGACTGGTTGAGC
* ** *
14104373 GCCCGCACGCTCGTTTCGTGGGTTAACTTCG
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
14104404 GCATACGTAGTTCATTCCCA-GTCTAAGATCAGATAAGACTGAGGGTTGCAGCAGTAGGATCGAC
1 GCATACG-AGTTCATT-CCATGTCTAAGATCAGATAGGACTGAGGGTTGCAGCAGCAGGATCGGC
** * * * *
14104468 AGCACATAGGGGGGACCGAACCGGTCCCCGGCTTACGCATTCTGCCTCTCTGACTGGCTGAGCAC
64 AGCACGCAGGGGGGATCG-ACCGATCCCCGGCTTACGCATTCTGCCTCTCTGACTGGTTGAGCGC
14104533 CCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
14104562 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACG-AGTTCATTCCATGTCTAAG
14104589 CATGCGGAGT
Statistics
Matches: 271, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 8 0.03
158 144 0.53
159 110 0.41
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGAGTTCATTCCATGTCTAAGATCAGATAGGACTGAGGGTTGCAGCAGCAGGATCGGCAG
CACGCAGGGGGGATCGACCGATCCCCGGCTTACGCATTCTGCCTCTCTGACTGGTTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:14105282 original size:159 final size:158
Alignment explanation
Indices: 14105000--14105287 Score: 366
Period size: 159 Copynumber: 1.8 Consensus size: 158
14104990 AAGATTTAAC
* * *
14105000 CGGATCGAGGGTTGCGACAGCAGCATCGGCAGCACGCAGGGGGGACCGAGCTGATCCCCGTCTTG
1 CGGACCGAGGGTTGCGACAGCAGCACCGGCAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTG
* * * *
14105065 CGCATTCTACCTCTCTGGTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
66 CGCATTATACCTCTCTGGTCGACTCAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAG
14105130 GGAGTTTATTCCATATCTAAGCCCCAGT
131 GGAGTTTATTCCATATCTAAGCCCCAGT
* * * * *
14105158 CGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGATCTG-G-TCGATCCTCGGC
1 CGGACCGAGGGTTGCGACAGCAGCACCGGCAGCACGCAG-GGGGGA-CCGAGCT-GATCCCCGGC
* * * * *
14105221 TTGTGCATTATGCCTCTTTGG-CTGACTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
63 TTGCGCATTATACCTCTCTGGTC-GACTCAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGC
14105285 ATA
127 ATA
14105288 CAGAGTTCAT
Statistics
Matches: 109, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 36 0.33
159 71 0.65
160 2 0.02
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGACAGCAGCACCGGCAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTG
CGCATTATACCTCTCTGGTCGACTCAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAG
GGAGTTTATTCCATATCTAAGCCCCAGT
Found at i:14106870 original size:158 final size:158
Alignment explanation
Indices: 14106569--14106911 Score: 406
Period size: 158 Copynumber: 2.2 Consensus size: 158
14106559 CCCAGTCTAA
* * * *
14106569 GCATACGAAGTTCATTCCTAGTCTAAGATTGAACAGGATCAAGGGTTGCGGCAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGAACAGGACCAAGGGTTGCGGCAGCAGGATCAGCA
* *
14106634 GCACGCAGAGGGGATCGGATCAATCCCTGGCTTGCGCATTCTGCCTCTCCAAGCGGCTGAGCACC
66 GCACGCAGAGGGGACCGGATCAATCCCTGGCTTACGCATTCTGCCTCTCCAAGCGGCTGAGCACC
* *
14106699 CGTATGCTCGTTTCATGGGTTGACTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
14106727 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGTGGTAGCAGGATC-GA
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACAGGACCAAGGGTTGCGGCAGCAGGATCAG-
* ** * * *
14106790 CAGCACGCAGGGGGGACC-GAGTCGGTCCCTGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGC
64 CAGCACGCAGAGGGGACCGGA-TCAATCCCTGGCTTACGCATTCTGCCTCTCCAAGCGGCTGAGC
* * * * *
14106854 TCCTGCACGCTTGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
14106885 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
14106912 CATACGAAGT
Statistics
Matches: 157, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
157 6 0.04
158 147 0.94
159 4 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGAACAGGACCAAGGGTTGCGGCAGCAGGATCAGCA
GCACGCAGAGGGGACCGGATCAATCCCTGGCTTACGCATTCTGCCTCTCCAAGCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:14106922 original size:26 final size:26
Alignment explanation
Indices: 14106885--14106937 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14106875 GTTGGCTTAG
14106885 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14106911 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
14106937 G
1 G
14106938 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14107415 original size:159 final size:158
Alignment explanation
Indices: 14107174--14107622 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 158
14107164 TTGCGATAGT
* * * * * *
14107174 AGGATCGATAGCACGCAGGGGGGACTGGGCCGATCCTTGGCTTACGCATTCTGCCTCCCCGGTCT
1 AGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATCA
* *
14107239 GCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 GCTGAG-CCCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* ** *
14107304 CCCCA-ACC-GAACTGAGGGTTGTGGCAGT
130 CACCAGACCAG-ACTGAGGGTTACGGCAGC
* * * ** *
14107332 GGGACCGACAGCACGTAGAGGGGGACCGGGCCAATCCTTGGCTTGTGCATTATGCCTCTCCGATC
1 AGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATC
* * * *
14107397 AGCTCAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
65 AGCTGAGC-CCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTA
* *
14107461 AG-ATCAGACCAGACTGAGGGTTACGGTAGC
128 AGCACCAGACCAGACTGAGGGTTACGGCAGC
* * * * * ** * *
14107491 AGGATCGACAGCATGCAGGGGGGACCGAGTCGGTCCCCGGCTTACACATTCTGCCTCTCCGATCG
1 AGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATCA
* * * * * *
14107556 GTTGAGCTCCTACACGCTCGTTTCGTGGTTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 GCTGAGCCCCGA-ACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
14107621 CA
130 CA
14107623 TACGGAGTTC
Statistics
Matches: 234, Mismatches: 49, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.03
158 99 0.42
159 125 0.53
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
AGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATCA
GCTGAGCCCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
ACCAGACCAGACTGAGGGTTACGGCAGC
Found at i:14107605 original size:158 final size:158
Alignment explanation
Indices: 14107119--14107620 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 158
14107109 CCTAGTCTAA
* ** * * * *
14107119 GCATACATAGTTCATTCC-TAGTCTAAGATCAGACCAGACCAATGATTGCGATAGTAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGAC
* * * *
14107183 AGCACGCAGGGGGGACTGGGCCGATCCTTGGCTTACGCATTCTGCCTCCCCGGTCTGCTGAG-TG
65 AGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCT-
*
14107247 CCCGCACGCTCATTTCATGGGTTGGCTTAG
129 CCCACACGCTCATTTCATGGGTTGGCTTAG
** * * * *
14107277 GCATACAGAGTTCATTCCATGTCTAAGCCCCA-ACC-GAACTGAGGGTTGTGGCAGTGGGACCGA
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACCAG-ACTGAGGGTTGCGGTAGTAGGATCGA
* * ** * * *
14107340 CAGCACGTAGAGGGGGACCGGGCCAATCCTTGGCTTGTGCATTATGCCTCTCCGATCAGCTCAAC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGC
* *
14107405 ACCCGA-ACGCTCATTTCATGGGTTGACTTAG
128 TCCC-ACACGCTCATTTCATGGGTTGGCTTAG
* * *
14107436 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGAC
* * * * ** * * *
14107500 AGCATGCAGGGGGGACCGAGTCGGTCCCCGGCTTACACATTCTGCCTCTCCGATCGGTTGAGCTC
65 AGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCTC
* * * *
14107565 CTACACGCTCGTTTCGTGGTTTGGCTTAG
130 CCACACGCTCATTTCATGGGTTGGCTTAG
14107594 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
14107621 CATACGGAGT
Statistics
Matches: 274, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 139 0.51
159 126 0.46
160 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCTCC
CACACGCTCATTTCATGGGTTGGCTTAG
Found at i:14107630 original size:26 final size:26
Alignment explanation
Indices: 14107594--14107646 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14107584 TTTGGCTTAG
14107594 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTACCA-GTCTAA
*
14107620 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
14107646 G
1 G
14107647 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:14107991 original size:26 final size:26
Alignment explanation
Indices: 14107962--14108014 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14107952 GTCGACTTAG
*
14107962 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14107988 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14108014 G
1 G
14108015 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14108336 original size:26 final size:26
Alignment explanation
Indices: 14108306--14108358 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14108296 GTTGACTTAG
14108306 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
14108332 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14108358 G
1 G
14108359 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14113460 original size:26 final size:26
Alignment explanation
Indices: 14113431--14113502 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
14113421 TAGGCATATG
14113431 GAGTTCATCCCCAGTCTAAGCATACA
1 GAGTTCATCCCCAGTCTAAGCATACA
*
14113457 GAGTTCATCCCCAGTCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACA
*
14113483 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATCCCCAGTCTAAG
14113503 ATTGGATCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCATACA
Found at i:14113779 original size:159 final size:159
Alignment explanation
Indices: 14113540--14114296 Score: 622
Period size: 159 Copynumber: 4.8 Consensus size: 159
14113530 TAGGAACGGT
* * * * * * * * *
14113540 AGCACGTAG-GGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCA
1 AGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCG
* * *
14113604 CCCGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
66 CCCGCACGCT-CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * *
14113667 CCGGACCGAGGGTTGTGGTAGCAGGACTGGA
130 CCAGACCGAGGGTTGCGGCAGCAGGA-TGGA
* * * * ** *
14113698 AGCATGCAGAGGGGGACCCGACCGATCCTCGACTTGCGTATTATGCCTCTTTGGCCGGCTCAGTG
1 AGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCG
* * * * * *
14113763 CCCGGACGCTCATTTCATGGGTTGACTTATGCATACGAATTTCATTCCCA-GTCTAAG-ATCAGA
66 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * *
14113826 CCAGACCGAGGGTTGCGACAGTAAGATCGGC
130 CCAGACCGAGGGTTGCGGCAGCAGGAT-GGA
* * * * * * * * * *
14113857 AGCACACAG-GTGGGACCGGGCTGATCC-CTGGCTTGCGCATTCTGTCTCTCCGGTCGGTTGAAC
1 AGCACGCAGAGGGGGACCGGGCCGATCCTC-GACTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
* * * * *
14113920 GCTCGCATGC-CTATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
65 GCCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
* * * *
14113984 -CTAGACCGAGGGTTGTGGCAGCGGGACTGGT
129 ACCAGACCGAGGGTTGCGGCAGCAGGA-TGGA
* * * * * *
14114015 AGCACGAAGAGGGGGACCAGGCCAATCCTCCG-CTTGTGCATTATGCCTCTTCGACCGGCTCAGC
1 AGCACGCAGAGGGGGACCGGGCCGATCCT-CGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
* * * * * *
14114079 ACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGATTTCATTCCCA-GTCTAAG-ATCAG
65 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * *
14114142 ACCAGGCCAAGGGTTGCGGTAGCAGGATCGA
129 ACCAGACCGAGGGTTGCGGCAGCAGGATGGA
* * ** * * * * *
14114173 CAGAACGTAG-GGGGGATTGGGCCCATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
1 -AGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
* * *
14114237 GCCCGTACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14114297 TATGGGGTTC
Statistics
Matches: 459, Mismatches: 120, Indels: 39
0.74 0.19 0.06
Matches are distributed among these distances:
157 10 0.02
158 213 0.46
159 226 0.49
160 9 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCG
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCGAGGGTTGCGGCAGCAGGATGGA
Found at i:14113998 original size:158 final size:155
Alignment explanation
Indices: 14113516--14114295 Score: 502
Period size: 158 Copynumber: 4.9 Consensus size: 155
14113506 GGATCAAACT
* ** *
14113516 GAGGGTTGTGACAGTAGGAACGGTAGCACGTAGGGGGGACCGGG-TCAATCCTCGGCTTGCGCAT
1 GAGGGTTGTGACAGTAGG-ACGGAAGCACACA-GGGGGACCGGGCT-GATCCTCGGCTTGCGCAT
* * *
14113580 TCTGCCTCTCCAGTCGGCTGAGCACCCGCACGTCC-GTTTCATGGGTTGGCTTAGGCATAGGGAG
63 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG-CCTATTTCATGGGTT-GCTTAGGCATAGGGAG
*
14113644 TTCATTCCATGTCTAAGCCCCAGCCGGACC
126 TTCATTCCATGTCTAAGCCCCAGCCAGACC
** * * * * * * *
14113674 GAGGGTTGTGGTAGCAGGACTGGAAGCATGCAGAGGGGGACCCGACCGATCCTCGACTTGCGTAT
1 GAGGGTTGTGACAGTAGGAC-GGAAGCA--CACAGGGGGACCGGGCTGATCCTCGGCTTGCGCAT
* ** * * * * * * * *
14113739 TATGCCTCTTTGGCCGGCTCAGTGCCCGGACG-CTCATTTCATGGGTTGACTTATGCATACGAAT
63 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCT-ATTTCATGGGTTG-CTTAGGCATAGGGAG
**
14113803 TTCATTCCCA-GTCTAAG-ATCAGACCAGACC
126 TTCATT-CCATGTCTAAGCCCCAG-CCAGACC
* * *
14113833 GAGGGTTGCGACAGTAAGATCGGCAGCACACAGGTGGGACCGGGCTGATCC-CTGGCTTGCGCAT
1 GAGGGTTGTGACAGTAGGA-CGGAAGCACACAGG-GGGACCGGGCTGATCCTC-GGCTTGCGCAT
* * * * *
14113897 TCTGTCTCTCCGGTCGGTTGAACGCTCGCATGCCTATTTCATGGGTTAGCTTAGGCATAGGGAGT
63 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCTATTTCATGGGTT-GCTTAGGCATAGGGAGT
*
14113962 TCATTCCATGTCTAAGCCCCAGCTAGACC
127 TCATTCCATGTCTAAGCCCCAGCCAGACC
* ** * * * ** * *
14113991 GAGGGTTGTGGCAGCGGGACTGGTAGCACGAAGAGGGGGACCAGGCCAATCCTCCGCTTGTGCAT
1 GAGGGTTGTGACAGTAGGAC-GGAAGCAC--ACAGGGGGACCGGGCTGATCCTCGGCTTGCGCAT
* * ** * * * * * *
14114056 TATGCCTCTTCGACCGGCTCAGCACCCGCACG-CTCGTTTCATGGGTTGACTTATGCATACGGAT
63 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCT-ATTTCATGGGTTG-CTTAGGCATAGGGAG
** *
14114120 TTCATTCCCA-GTCTAAG-ATCAGACCAGGCC
126 TTCATT-CCATGTCTAAGCCCCAG-CCAGACC
* * ** * * ** ** ** * *
14114150 AAGGGTTGCGGTAGCAGGATC-GACAGAACGTAGGGGGGATTGGGCCCATCCCCGACTTGCGCAT
1 GAGGGTTGTGACAGTAGGA-CGGA-AGCACACA-GGGGGACCGGGCTGATCCTCGGCTTGCGCAT
* * * * *
14114214 TCTGCCTCTCCGGTCGGCTAAGCGCCCGTACG-TTCGTTTCATGGGTTGGCTTAGGCATACGGAG
63 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCT-ATTTCATGGGTT-GCTTAGGCATAGGGAG
14114278 TTCATTCCATGTCTAAGC
126 TTCATTCCATGTCTAAGC
14114296 ATATGGGGTT
Statistics
Matches: 475, Mismatches: 117, Indels: 59
0.73 0.18 0.09
Matches are distributed among these distances:
157 17 0.04
158 225 0.47
159 218 0.46
160 15 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
GAGGGTTGTGACAGTAGGACGGAAGCACACAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCT
GCCTCTCCGGTCGGCTGAGCGCCCGCACGCCTATTTCATGGGTTGCTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCCCCAGCCAGACC
Found at i:14114060 original size:317 final size:317
Alignment explanation
Indices: 14113476--14114295 Score: 1022
Period size: 317 Copynumber: 2.6 Consensus size: 317
14113466 CCCAGTCTAA
* ** * * * * * *
14113476 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACTGAGGGTTGTGACAGTAGGAACGGTA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCA
* * *
14113541 GCACGTAGGGGGGACCGGG-TCAAT-CCTCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCA
66 GCACGTAGGGGGGACCGGGCT-AATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACG
14113604 CCCGCACGTCC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
129 CCCGCACG-CCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * *
14113668 CGGACCGAGGGTTGTGGTAGCAGGACTGGAAGCATGCAGAGGGGGACCCGACCGATCCTCGACTT
193 CAGACCGAGGGTTGTGGCAGCAGGACTGGAAGCACGAAGAGGGGGACCAGACCAATCCTCGACTT
* * * ** *
14113733 GCGTATTATGCCTCTTTGGCCGGCTCAGTGCCCGGACGCTCATTTCATGGGTTGACTTAT
258 GCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAT
* *
14113793 GCATACGAATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAAGATCGGCA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCA
** * * * * *
14113858 GCACACAGGTGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGTCTCTCCGGTCGGTTGAACGCT
66 GCACGTAGGGGGGACCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGCC
* * * *
14113923 CGCATGCCTATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
131 CGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * *
14113988 ACCGAGGGTTGTGGCAGCGGGACTGGTAGCACGAAGAGGGGGACCAGGCCAATCCTCCG-CTTGT
196 ACCGAGGGTTGTGGCAGCAGGACTGGAAGCACGAAGAGGGGGACCAGACCAATCCT-CGACTTGC
*
14114052 GCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAT
260 GCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAT
* * ** * *
14114110 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGGCCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCA
* ** ** * *
14114175 GAACGTAGGGGGGATTGGGCCCATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCT-AAGCGC
66 GCACGTAGGGGGGACCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAA-CGC
* * *
14114239 CCGTACG-TTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CCGCACGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
14114296 ATATGGGGTT
Statistics
Matches: 428, Mismatches: 69, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
316 5 0.01
317 417 0.97
318 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACGGATTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCA
GCACGTAGGGGGGACCGGGCTAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGCC
CGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGCAGCAGGACTGGAAGCACGAAGAGGGGGACCAGACCAATCCTCGACTTGCG
CATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAT
Found at i:14114415 original size:11 final size:11
Alignment explanation
Indices: 14114399--14114423 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14114389 ACCACCGCCA
14114399 GAGCATCGTCG
1 GAGCATCGTCG
14114410 GAGCATCGTCG
1 GAGCATCGTCG
14114421 GAG
1 GAG
14114424 AGCCTAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:14117027 original size:26 final size:26
Alignment explanation
Indices: 14116991--14117043 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14116981 GTTGACTTAG
14116991 GCATACAGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
14117017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14117043 G
1 G
14117044 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14117402 original size:159 final size:156
Alignment explanation
Indices: 14117016--14117402 Score: 382
Period size: 159 Copynumber: 2.4 Consensus size: 156
14117006 CCCAAGTCTA
* * * *
14117016 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGGCAGCAGGATCGAC
1 AGCATACGGAGTTCA-TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
14117081 AGCACGTAGGGGGGACCGAGCCGATCTTTGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGTGC
65 AGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAATGC
* *
14117146 CCGCACGCCCATTCTGTGGGTTGGCTT
130 CCGCACGCCCATTCTATGGGTTGACTT
* * ** * *
14117173 AGTCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCG
1 AG-CATACGGAGTTCATCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
14117237 GCAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGTGCATTATGCCTCTTCAGCCGACTCAA
63 ACAGCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAA
* * *
14117302 TGCCCGTACGCTCGTT-TCATGGGTTGACTT
127 TGCCCGCACGCCCATTCT-ATGGGTTGACTT
* *
14117332 ATGCATACAGCGTTCAGTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
1 A-GCATACGGAGTTCA-TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
*
14117397 TAGCAC
64 CAGCAC
14117403 AATAGGGGGA
Statistics
Matches: 181, Mismatches: 41, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 56 0.31
159 114 0.63
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (156 bp):
AGCATACGGAGTTCATCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAATGCC
CGCACGCCCATTCTATGGGTTGACTT
Found at i:14117505 original size:158 final size:157
Alignment explanation
Indices: 14117017--14117518 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 157
14117007 CCAAGTCTAA
* * * * *
14117017 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAAGGTTGCGGCAGCAGGATCGAC
1 GCATACGAAGTTCA-TCCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
14117081 AGCACGTAGGGGGGACCGAGCCGATCTTTGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGTGC
65 AGCACATA-GGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCCGGCCGGCTGCGTGC
* * *
14117146 CCGCACGCCCATTCTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * * ** * * *
14117175 TCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCGGC
1 GCATACGAAGTTCATCCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
14117239 AGCACGCAGAGGGGGA-TCGGGTCGATCCTCGGCTTGTGCATTATGCCTCTT-CAGCCGACT-CA
65 AGCA--CATAGGGGGACT-GGGCCGATCCTCGGCTTGCGCATTATGCCT-TTCCGGCCGGCTGC-
* * ** * *
14117301 ATGCCCGTACGCTCGTTTCATGGGTTGACTTAT
125 GTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
*
14117334 GCATAC-AGCGTTCAGTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGA-AGTTCA-TCCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
14117397 TAGCACAATAGGGGGACTGGGCCAATCCCCAGCTTACGCATTATGCCTTTCCGGCCGGCTGCGTG
64 CAGCAC-ATAGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCCGGCCGGCTGCGTG
** *
14117462 CTTGCACACTCGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
*
14117492 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATCCCATGTCTAAG
14117519 CATACGGAGT
Statistics
Matches: 261, Mismatches: 67, Indels: 32
0.73 0.19 0.09
Matches are distributed among these distances:
157 11 0.04
158 132 0.51
159 111 0.43
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATCCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACATAGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCCGGCCGGCTGCGTGCCC
GCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:14117529 original size:26 final size:26
Alignment explanation
Indices: 14117492--14117544 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14117482 GTTGGCTTAG
14117492 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
14117518 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
14117544 G
1 G
14117545 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14117926 original size:26 final size:26
Alignment explanation
Indices: 14117890--14117942 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14117880 GTTGACTTAG
14117890 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14117916 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14117942 G
1 G
14117943 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14119664 original size:26 final size:26
Alignment explanation
Indices: 14119635--14119687 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14119625 TTGGCTTATG
14119635 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14119661 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14119687 G
1 G
14119688 AATTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14121691 original size:26 final size:26
Alignment explanation
Indices: 14121655--14121705 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14121645 TGACTTAGGT
* *
14121655 ATACGGAGTTC-TTCCCCAGTCTAAGC
1 ATACAGAGTTCATT-CCCAATCTAAGC
14121681 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
14121706 ATGAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:14121989 original size:159 final size:159
Alignment explanation
Indices: 14121803--14122500 Score: 639
Period size: 159 Copynumber: 4.4 Consensus size: 159
14121793 AGGTTGGTTG
* * *
14121803 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * * * * * *
14121868 AG-CCAGACTGAGGATTGTGGCTA-CGGGACCGGCAGCACGTAGAGGGGGATCGGGTCGATCCCC
66 AGACCAGACCGAGGGTTGTGGC-AGCAGGACCGACAGCACGTAGAGGGGGACCGAGCCGATCCCC
*
14121931 GACTTACGCATTATGCCTCTCCAGCCTGCTC
130 GACTTGCGCATTATGCCTCTCC-GCCTGCTC
* * * * *
14121962 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* ** * *
14122025 CAGACC-GAACCAAGGGTTACGACAGCAGGATCGACAGCACGTAG-GGGGGACCGAGCCGATCCC
65 CAGACCAG-ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCCGATCCC
* * * *
14122088 TGGCTTGCGCATTGTGCCTCTCCGACCTGCTG
129 CGACTTGCGCATTATGCCTCTCCG-CCTGCTC
* * * *
14122120 AGC-CCCTGCACACTCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCC
1 AGCGCCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
* * * * * * * *
14122184 CAG-CCAGACCGAGGGTTGTCGCAGCGGGACGGGCAGCATGCAAAGGGGTACCGAGCCGATCCCC
65 CAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCCGATCCCC
* * * *
14122248 GACTTGCGTATTATGCCTCTTCG-ATCGACGC
130 GACTTGCGCATTATGCCTCTCCGCCT-G-CTC
* ** * * * * *
14122279 AGCACATGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * ** * * *
14122342 CAGACCAGACCGAGGGTTGTTGCTGCAGGATTGACAGCACGTA-AGGGCGGATCGGGTCGATCCC
65 CAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGG-GGACCGAGCCGATCCC
* * *
14122406 CGACTTGCGTATTTTGCCTCTCTAC-CCTGCTG
129 CGACTTGCGCATTATGCCTCTC--CGCCTGCTC
* * *
14122438 AGCGCTCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCGAAGCA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14122501 TACGGAGTTC
Statistics
Matches: 426, Mismatches: 92, Indels: 41
0.76 0.16 0.07
Matches are distributed among these distances:
157 8 0.02
158 129 0.30
159 278 0.65
160 9 0.02
161 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCCGATCCCCG
ACTTGCGCATTATGCCTCTCCGCCTGCTC
Found at i:14122263 original size:317 final size:317
Alignment explanation
Indices: 14121679--14122499 Score: 892
Period size: 317 Copynumber: 2.6 Consensus size: 317
14121669 CCCAGTCTAA
* * * *
14121679 GCATACAGAGTTCATTCCCAATCTAAGATGAGACCGGACCGAGGGTTACAACAGCAGGATC-AGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGA-C
* * * * * * * ** *
14121743 AACATGCATGGGGGATC-AGGCCGAT-CTTCGGCTTTCGTATTCTGCCTCTCAG-GTTGGTTGAG
65 AGCACGTAGGGGGGATCGA-GCCGATCCCT-GGCTTGCGTATTCTGCCTCTCCGACCT-GCTGAG
*
14121805 CGCCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
127 C-CCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * *
14121869 GCCAGACTGAGGATTGTGGCTACGGGACCGGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGAC
191 GCCAGACCGAGGATTGTCGCTACGGGACCGGCAGCACGCAAAGGGGGACCGAGCCGATCCCCGAC
* * * * * * *
14121934 TTACGCATTATGCCTCTCC-AGCCTG-CTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
256 TTACGCATTATGCCTCTCCGA-TC-GACGCAGCACACGCACGCTCATTTCATGGGTTGACTTAG
* *
14121996 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACA
* * *
14122061 GCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTGTGCCTCTCCGACCTGCTGAGCCCC
66 GCACGTAGGGGGGATCGAGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGACCTGCTGAGCCCC
* *
14122126 TGCACACTCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
131 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * *
14122191 ACCGAGGGTTGTCGC-AGCGGGACGGGCAGCATGCAAAGGGGTACCGAGCCGATCCCCGACTTGC
196 ACCGAGGATTGTCGCTA-CGGGACCGGCAGCACGCAAAGGGGGACCGAGCCGATCCCCGACTTAC
* * * *
14122255 GTATTATGCCTCTTCGATCGACGCAGCACATGCACGCTCATTTCATGGGTTGACTTAT
260 GCATTATGCCTCTCCGATCGACGCAGCACACGCACGCTCATTTCATGGGTTGACTTAG
* ** * *
14122313 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGTTG-CTGCAGGATTGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTT-ACGACAGCAGGATCGA
* * * * * * *
14122376 CAGCACGTAAGGGCGGATCGGGTCGATCCCCGACTTGCGTATTTTGCCTCT-CTACCCTGCTGAG
64 CAGCACGT-AGGGGGGATCGAGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGA-CCTGCTGAG
* * * *
14122440 -CGCTCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCGAAGC
127 CCCCT-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
14122500 ATACGGAGTT
Statistics
Matches: 424, Mismatches: 67, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
316 6 0.01
317 318 0.75
318 100 0.24
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACA
GCACGTAGGGGGGATCGAGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGACCTGCTGAGCCCC
TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGATTGTCGCTACGGGACCGGCAGCACGCAAAGGGGGACCGAGCCGATCCCCGACTTACG
CATTATGCCTCTCCGATCGACGCAGCACACGCACGCTCATTTCATGGGTTGACTTAG
Found at i:14123340 original size:26 final size:26
Alignment explanation
Indices: 14123310--14123362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14123300 GTTTACTTAG
*
14123310 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14123336 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14123362 G
1 G
14123363 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14123520 original size:184 final size:188
Alignment explanation
Indices: 14123030--14123521 Score: 512
Period size: 197 Copynumber: 2.6 Consensus size: 188
14123020 CATGCAGGAA
* * *
14123030 GGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTACGATCGGCTGAGTGCCCGCACGCTCG
1 GGGACC-GGCCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACGCTCG
** * *
14123095 TTTCATGGGTTGGTTTAGGCATACAGAGTTCATTCCATATCTAAGCATACGGAGTTCATTCCCAG
65 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* * *
14123160 TCTAAGATCGGATAGGACCGAGGGTTACGGCAGTAAGACCAGTAGCAGGATCGAGAGCACGCAGG
130 TCTAAGATCAGACAGGACCGAGGGTTA--GC----AGACCA--AGCAGGATCGAGAGCACGCAGA
14123225 GG
187 GG
* * * * * * *
14123227 GGGATCGAGCCAAT-CCTCAGTTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCATGCTC
1 GGGACCG-GCCGATCCCTGA-CTTGCACATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACGCTC
* * *
14123291 GTTTCATGGGTTTACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCC
64 GTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCC
* * *
14123355 AGTCTAAGATCAGACCGGACTGAGGGTT-GC-GA-C-AGCAGGATCGATAGCACGCA-AGG
128 AGTCTAAGATCAGACAGGACCGAGGGTTAGCAGACCAAGCAGGATCGAGAGCACGCAGAGG
* * * * * *
14123411 GGGACCAGGCCGATCCCTGACTTGCACATTCTGCCTCTCCAACCGGCAAAGTGCCCGTACACCCG
1 GGGACC-GGCCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACGCTCG
* * * * *
14123476 TTTCGTGGGCTGACTTAGGCTTAGGGAGTTCATTCCTTGTCTAAGC
65 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14123522 GCCAGTCAGA
Statistics
Matches: 246, Mismatches: 43, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
183 2 0.01
184 83 0.34
185 24 0.10
188 1 0.00
189 2 0.01
194 2 0.01
196 4 0.02
197 125 0.51
198 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (188 bp):
GGGACCGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACAGGACCGAGGGTTAGCAGACCAAGCAGGATCGAGAGCACGCAGAGG
Found at i:14123696 original size:159 final size:157
Alignment explanation
Indices: 14123336--14123731 Score: 354
Period size: 159 Copynumber: 2.5 Consensus size: 157
14123326 CCCAGTCTAA
* *
14123336 GCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGAT
1 GCATA-GGAAGTTCATTTCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGACAGCAGGATCGAT
* * * * *
14123400 AGCACGCAAGGGGGACCAGGCCGATCCCTGACTTGCACATTCTGCCTCTCCAACCGGCAAAGTGC
64 AGCACGCAAAGGGGACAAGGCCGATCCCAGACTTGAACATTATGCCTCTCCAACCGGCAAAGTGC
* * *
14123465 CCGTACACCCGTTTCGTGGGCTGACTTAG
129 CCGAACACCCGTTTCATAGGCTGACTTAG
* * * ** * * * *
14123494 GCTTAGGGAGTTCA-TTCCTTGTCTAAGCGCCAGTCAGATCGAGGGTTGTGACAGC-GAGATCGA
1 GCATAGGAAGTTCATTTCC-AGTCTAAG-ATCAGACCGACCGAGGGTTGCGACAGCAG-GATCGA
** *
14123557 CT-GCACGCAGAAGGGGACAAGGCCGATCCTCAG-CTTGAACATTATGCCTCTCCAGTCGGCTCA
63 -TAGCACGCA-AAGGGGACAAGGCCGATCC-CAGACTTGAACATTATGCCTCTCCAACCGGC-AA
* * *
14123620 A-TGCCCGAACGCTCGTTTCATAGGTTGACTTAG
124 AGTGCCCGAACACCCGTTTCATAGGCTGACTTAG
* * * ** * *
14123653 GCATATGAAGTTCATTTCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATAGGAAGTTCATTTCCAGTCTAAGATCAGACCG-ACCGAGGGTTGCGACAGCAGGATCGATA
* *
14123718 GCACGTAAGGGGGA
65 GCACGCAAAGGGGA
14123732 TCAGGTCGGT
Statistics
Matches: 184, Mismatches: 42, Indels: 24
0.74 0.17 0.10
Matches are distributed among these distances:
157 6 0.03
158 56 0.30
159 113 0.61
160 9 0.05
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATAGGAAGTTCATTTCCAGTCTAAGATCAGACCGACCGAGGGTTGCGACAGCAGGATCGATAG
CACGCAAAGGGGACAAGGCCGATCCCAGACTTGAACATTATGCCTCTCCAACCGGCAAAGTGCCC
GAACACCCGTTTCATAGGCTGACTTAG
Found at i:14124034 original size:26 final size:26
Alignment explanation
Indices: 14123982--14124034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14123972 GTTGGCTTAG
* *
14123982 GCATACGGAGTTCATTCCCTGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14124008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14124034 G
1 G
14124035 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14124190 original size:196 final size:197
Alignment explanation
Indices: 14123845--14124205 Score: 490
Period size: 196 Copynumber: 1.8 Consensus size: 197
14123835 AAGCCCCAGC
* ** **
14123845 CGGACCGAGGGTTATGGTAGCAAGACTGACAGCGGGATCGATAGCACGTCGAGGGGGACCAGGCT
1 CGGACCGAGGGTTACGGTAGCAAGACCAACAGCGGGATCGATAGCACGAAGAGGGGGACCAGGCT
** * * * * * * *
14123910 GATCCTGGGCTTGCGCTTTCTACCTCTCCAGTCGACTGAGCTCCCGCATGCTCGTTTTATGGGTT
66 GATCCCCGGCTTGCGCATTCTACCGCTCCAGTCGACTGAGCACCCGCACGCCCATTTCATGGGTT
* *
14123975 GGCTTAGGCATACGGAGTTCATTCCCTGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
131 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
14124040 AT
196 AT
* * * * *
14124042 CGGATCGAGGGTTACGGTAGTAGGACCAACAGCGGGATCGATAGCACGAAG-GGGGGACCGGGTT
1 CGGACCGAGGGTTACGGTAGCAAGACCAACAGCGGGATCGATAGCACGAAGAGGGGGACCAGGCT
* **
14124106 GATCCCCGGCTTGCGCATTCTGCCGCTCTGGTCGACTGAGCACCCGCACGCCCATTTCATGGGTT
66 GATCCCCGGCTTGCGCATTCTACCGCTCCAGTCGACTGAGCACCCGCACGCCCATTTCATGGGTT
*
14124171 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
131 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14124206 CCCAGCCGGA
Statistics
Matches: 139, Mismatches: 25, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
196 96 0.69
197 43 0.31
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (197 bp):
CGGACCGAGGGTTACGGTAGCAAGACCAACAGCGGGATCGATAGCACGAAGAGGGGGACCAGGCT
GATCCCCGGCTTGCGCATTCTACCGCTCCAGTCGACTGAGCACCCGCACGCCCATTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
AT
Found at i:14124494 original size:684 final size:672
Alignment explanation
Indices: 14123248--14124522 Score: 1465
Period size: 684 Copynumber: 1.9 Consensus size: 672
14123238 AATCCTCAGT
* * *
14123248 TTGCGCATTCTGCCTCTCCGATCGGCTAAGCGCCCGCATGCTCGTTTCATGGGTTTACTTAGGCA
1 TTGCGCATTCTACCTCTCCGATCGACTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCA
*
14123313 TATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
66 TACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
* *
14123378 GGGTTGCGACAGCAGGATCGATAGCACGCAAGGGGGACCAGGCCGATCCCTGACTTGCACATTCT
131 GGGTTGCAACAGCAGGATCGATAGCACGCAAGGGGGACCAGGCCGATCCCCGACTTGCACATTCT
* * ** * * * *
14123443 GCCTCTCCAACCGGCAAAGTGCCCGTACACCCGTTTCGTGGGCTGACTTAGGCTTAGGGAGTTCA
196 GCCGCTCCAACCGACAAAGCACCCGCACACCCATTTCATGGGCTGACTTAGGCATAGGGAGTTCA
* * * * * * *
14123508 TTCCTTGTCTAAGCGCCAGTCAGATCGAGGGTTGTGACAGCGAGATCGACTGCACGCAGAAGGGG
261 TTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGACAGCGAGACCGACAGCACGCAGAAGGGG
* * *
14123573 ACAAGGCCGATCCTCAGCTTGAACATTATGCCTCTCCAGTCGGCTCAATGCCCGAACGCTCGTTT
326 ACAAGGCCGATCCTCAGCTTGAACATTATGCCTCTCCAGCCGGCTCAACGCCCGAACGCTCATTT
* *
14123638 CATAGGTTGACTTAGGCATATGAAGTTCATTTCCAGTCTAAGATCGGACCGAACCGAGGGTTACG
391 CATAGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACG
* * * **
14123703 GTAGTAGGATCGACAGCACGTAAGGGGGATCAGGTCGGTCCCCGACATGCCCATTCTGCCTCTCT
456 ATAGTAGGATCGACAGCACGTAAGGGGGACCAGGCCAATCCCCGACATGCCCATTCTGCCTCTCT
* * *
14123768 GGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATGT
521 CGACGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCATGT
14123833 CTAAGCCCCAGCCGGACCGAGGGTTATGGTAGCAAGACTGACAGCGGGATCGATAGCACGTCGAG
586 CTAAGCCCCAGCCGGACCGAGGGTTATGGTAGCAAGACTGACAGCGGGATCGATAGCACGTCGAG
14123898 GGGGACCAGGCTGATCCTGGGC
651 GGGGACCAGGCTGATCCTGGGC
* * * * *
14123920 TTGCGCTTTCTACCTCTCC-AGTCGACTGAGCTCCCGCATGCTCGTTTTATGGGTTGGCTTAGGC
1 TTGCGCATTCTACCTCTCCGA-TCGACTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGC
* * * * *
14123984 ATACGGAGTTCATTCCCTGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TC
65 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-
* * **
14124048 GAGGGTTACGGTAGTAGGACCAACAGCGGGATCGATAGCACG-AAGGGGGGACCGGGTTGATCCC
129 GA--G----GGT--T--G--CAACAGCAGGATCGATAGCACGCAA-GGGGGACCAGGCCGATCCC
* * **** ** * * *
14124112 CGGCTTGCGCATTCTGCCGCTCTGGTCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTA
181 CGACTTGCACATTCTGCCGCTCCAACCGACAAAGCACCCGCACACCCATTTCATGGGCTGACTTA
* * ** *
14124177 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTTTGGTAGCGGGACCGAC
246 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGACAGCGAGACCGAC
* * * * * *
14124242 AGCATGCAG-AGGGAGATC-AGGCTGATCCTC-GGTTTACACATTATGCCTCTTC-GACCGGCTT
311 AGCACGCAGAAGGG-GA-CAAGGCCGATCCTCAGCTTGA-ACATTATGCCTCTCCAG-CCGGCTC
** * * * *
14124303 AACGTTCGCACGCTCATTTC-TTGGTTTACTTATGCATACAG-AGTTCATTCCCAGTCTAAGATC
372 AACGCCCGAACGCTCATTTCATAGGTTGACTTAGGCATA-AGAAGTTCATTCCCAGTCTAAGATC
* * * * * * * * *
14124366 GGACCGGACTGAGGGTTGCGATAGTTGGGTTGACAGCACGCT-GGGGCGGACCGGGCCAATCCTC
436 GGACCGAACCGAGGGTTACGATAGTAGGATCGACAGCACG-TAAGGG-GGACCAGGCCAATCCCC
* * *
14124430 GACTTGCGCATTCTGCCTCT-TCGACTGGCTGAGCGCTCGCACGCTCATTTCATGGGTTGGCTTA
499 GACATGCCCATTCTGCCTCTCTCGAC-GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTA
*
14124494 GGCATACGGAGTTCATTCCATGTCTAAGC
563 GGAATACGGAGTTCATTCCATGTCTAAGC
14124523 ATACGGAGTT
Statistics
Matches: 491, Mismatches: 89, Indels: 34
0.80 0.14 0.06
Matches are distributed among these distances:
671 2 0.00
672 112 0.23
674 1 0.00
678 3 0.01
680 1 0.00
682 1 0.00
683 86 0.18
684 284 0.58
685 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (672 bp):
TTGCGCATTCTACCTCTCCGATCGACTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCA
TACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
GGGTTGCAACAGCAGGATCGATAGCACGCAAGGGGGACCAGGCCGATCCCCGACTTGCACATTCT
GCCGCTCCAACCGACAAAGCACCCGCACACCCATTTCATGGGCTGACTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGACAGCGAGACCGACAGCACGCAGAAGGGG
ACAAGGCCGATCCTCAGCTTGAACATTATGCCTCTCCAGCCGGCTCAACGCCCGAACGCTCATTT
CATAGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACG
ATAGTAGGATCGACAGCACGTAAGGGGGACCAGGCCAATCCCCGACATGCCCATTCTGCCTCTCT
CGACGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCGGACCGAGGGTTATGGTAGCAAGACTGACAGCGGGATCGATAGCACGTCGAG
GGGGACCAGGCTGATCCTGGGC
Found at i:14124525 original size:26 final size:26
Alignment explanation
Indices: 14124495--14124547 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14124485 GTTGGCTTAG
14124495 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14124521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14124547 G
1 G
14124548 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14125562 original size:159 final size:160
Alignment explanation
Indices: 14125371--14125745 Score: 411
Period size: 159 Copynumber: 2.4 Consensus size: 160
14125361 CGATTGAACG
**
14125371 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-A
1 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGA
*** ** * * *
14125434 CCAGACCGAGGGTTGTGGTAGTGGGACCGACAGCACGC-AGAGAGGGATCGGGCCGATGCCCGAC
65 CCAGACCGAGGGTTGCACTAGCAGGACCGACAGCACGCAAG-GAGGGACCGAGCCGATCCCCGAC
* *
14125498 TTACGTATTATGCCTCTCCGGCCGGCTCAGCA
129 TTACGCATTATACCTCTCCGGCCGGCTCAGCA
* * ***
14125530 TCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-TTTAGA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAGA
* * * * * *
14125593 TCAGACTGAGGGTTGCACTAGCAGGATCGACAGCATGCAAGGGGGGACCGAGTCGATCCCCGACT
65 CCAGACCGAGGGTTGCACTAGCAGGACCGACAGCACGCAAGGAGGGACCGAGCCGATCCCCGACT
* * * * **
14125658 TGCGCATTCTACCTCTCCGGCTGGCTGAGGG
130 TACGCATTATACCTCTCCGGCCGGCTCAGCA
*
14125689 CCCGCACGCTCATTTCGTGGG-TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
14125746 ATATGGAGTT
Statistics
Matches: 178, Mismatches: 32, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 31 0.17
159 138 0.78
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGAC
CAGACCGAGGGTTGCACTAGCAGGACCGACAGCACGCAAGGAGGGACCGAGCCGATCCCCGACTT
ACGCATTATACCTCTCCGGCCGGCTCAGCA
Found at i:14126177 original size:511 final size:505
Alignment explanation
Indices: 14125308--14126478 Score: 1413
Period size: 511 Copynumber: 2.3 Consensus size: 505
14125298 AGGATTGGCT
* * * * *
14125308 GCACACAGGGGGGACC-GGACTGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGATTGAACGC
1 GCACGCAGGGGGGACCAGG-CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACGC
* *
14125372 CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
65 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
14125437 GACCGAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAGAGGGATCGGGCCGATGCCCGACTTAC
130 GACCGAGGGTTGTGGCAGTGAGACCGACAGCACGAAGAGAGGGACCAGGCCGATGCCCGACTTAC
* * * * * *
14125502 GTATTATGCCTCTCCGGCCGGCTCAGCATCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA
195 GTATTATGCCTCTCCGACCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACA
* * * *
14125567 GAGTTCATTCCCAGTCTAAGTTTAGATCAGACTGAGGGTTGCACTAGCAGGATCGACAGCATGCA
260 GAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCACTAGCAGGATCGACAGCATGCA
* * *
14125632 AGGGGGGACCGAGTCGATCCCCGACTTGCGCATTCTACCTCTCCGG-CTGGCTGAGGGCCCGCAC
325 AGGGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCCGGTC-AGCTGAGCGCCCGCAC
* * * **
14125696 -GCTCATTTCGTGGGTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT
389 AG-TCATTTCGT-AG-GGC--A---A-ACAGAGTTCACTCCATGTCTAAGCACACAGAGTTCATT
** ** ** * * * * *
14125760 CCCAGTCTAAGATTGGA-TTGGGCAGATGGTTGCGGCAGCAGGACCAACAGCGGGATCGACA
445 CCCAGTCTAAGATCAGACCAGACCA-AGGGTTGCGACAGCAAGACCAACAGCAGGATCAACA
* ** * * * *
14125821 GCATGCA-GGGGGACTGGGCCGATCCCCAGTTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGCC
1 GCACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCC
* * * *
14125885 TGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCCGG
66 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * *
14125950 ACCGA-GGTTGTGGCAGTGAGACCGACAGCACGAAGAGGGGGACCAGGTCGAT-CCTCGGCTTAC
131 ACCGAGGGTTGTGGCAGTGAGACCGACAGCACGAAGAGAGGGACCAGGCCGATGCC-CGACTTAC
* * **
14126013 GTATTATGCCTCTCCGATCGGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAGGCATATG
195 GTATTATGCCTCTCCGACCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACA
* *
14126078 GAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCAGC-AGCAGGATCGACAGCGTGC
260 GAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCA-CTAGCAGGATCGACAGCATGC
* * * * * *
14126142 AGGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCAGCTGAGCGCCCGCAC
324 AAGGGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCCGGTCAGCTGAGCGCCCGCAC
* *
14126207 AGTCGTTTCGTAGGGCAAACGGAGTTCACTCCATGTCTAAGCACACAGAGTTCATTCCCAGTCTA
389 AGTCATTTCGTAGGGCAAACAGAGTTCACTCCATGTCTAAGCACACAGAGTTCATTCCCAGTCTA
* * * *
14126272 AGATCAGACCAGACCAAGGGTTGCGATAGCAAGACTAGCAGCAGGATCAATA
454 AGATCAGACCAGACCAAGGGTTGCGACAGCAAGACCAACAGCAGGATCAACA
* * * *
14126324 GCACGTAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCC
1 GCACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCC
* * ** *
14126389 CGTACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
66 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
*
14126454 ACCGAGGGTTGTGGCAGTAAGACCG
131 ACCGAGGGTTGTGGCAGTGAGACCG
14126479 GCAACGGGAT
Statistics
Matches: 557, Mismatches: 93, Indels: 24
0.83 0.14 0.04
Matches are distributed among these distances:
503 80 0.14
504 113 0.20
505 18 0.03
507 1 0.00
509 3 0.01
510 3 0.01
511 220 0.39
512 112 0.20
513 7 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (505 bp):
GCACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGCAGTGAGACCGACAGCACGAAGAGAGGGACCAGGCCGATGCCCGACTTACG
TATTATGCCTCTCCGACCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCACTAGCAGGATCGACAGCATGCAA
GGGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCCGGTCAGCTGAGCGCCCGCACAG
TCATTTCGTAGGGCAAACAGAGTTCACTCCATGTCTAAGCACACAGAGTTCATTCCCAGTCTAAG
ATCAGACCAGACCAAGGGTTGCGACAGCAAGACCAACAGCAGGATCAACA
Found at i:14126631 original size:26 final size:26
Alignment explanation
Indices: 14126601--14126653 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14126591 GTTGACTTAG
*
14126601 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
14126627 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
14126653 G
1 G
14126654 AGCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:14126980 original size:26 final size:26
Alignment explanation
Indices: 14126943--14126995 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14126933 GTTAGCTTAG
*
14126943 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
14126969 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
14126995 G
1 G
14126996 ATCCGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:14127176 original size:26 final size:26
Alignment explanation
Indices: 14127140--14127192 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14127130 GTTGACTTAG
14127140 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
14127166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14127192 G
1 G
14127193 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14127257 original size:197 final size:197
Alignment explanation
Indices: 14126911--14127283 Score: 529
Period size: 197 Copynumber: 1.9 Consensus size: 197
14126901 GTCGACTGAG
* *
14126911 TGCCCGCACGCTCGTTTCGTGTGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
1 TGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* *
14126976 AAGTTCATTCTCAGTCTAAGATCCGACCAGACCAAGGGTTATGGTAGCAAGATCGGCAGCACACA
66 AAGTTCATTCCCAGTCTAAGATCCGACCAGACCAAGGGTTATGGCAGCAAGATCGGCAGCACACA
** * *
14127041 GGGGGGACCAAGACGATCCCCGACTTGCGTATTCTGCCTCTCCGACTGGCCTCTCTGGCTGGTTG
131 AAGGGGACCAAGACGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCCTCTCTGGCTGGTTG
14127106 AA
196 AA
14127108 TGCCCGCACGCTCATTTCGTGGGTT-GACTTAGGCATACGGAGTTCATCTCCA-GTCTAAGCATA
1 TGCCCGCACGCTCATTTCGTGGGTTAG-CTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATA
* * * *
14127171 CGGAGTTCATTCCCAGTCTAAGAT-CGAACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCAT
64 CGAAGTTCATTCCCAGTCTAAGATCCG-ACCAGACCAAGGGTTATGGCAGCAAGATCGGCAGCAC
* * * * *
14127235 GCAAAGGGGA-CAGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGAC
128 ACAAAGGGGACCA-AGACGATCCCCGACTTACGCATTCTGCCTCTCCGAC
14127284 CGACTGAGCG
Statistics
Matches: 155, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
196 5 0.03
197 146 0.94
198 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (197 bp):
TGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
AAGTTCATTCCCAGTCTAAGATCCGACCAGACCAAGGGTTATGGCAGCAAGATCGGCAGCACACA
AAGGGGACCAAGACGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCCTCTCTGGCTGGTTG
AA
Found at i:14127398 original size:184 final size:184
Alignment explanation
Indices: 14127120--14127522 Score: 563
Period size: 184 Copynumber: 2.2 Consensus size: 184
14127110 CCCGCACGCT
* *
14127120 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCC
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
14127185 AGTCTAAGATCGAACCAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCATGCAAAGGGGACAGGG
66 AATCTAAGATCAAACCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACGCAAAGGGGACAGGG
* *
14127250 CCGATCCCCGGCTTATGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCAAGCC
131 CCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCTGCAAGCC
* * * *
14127304 CGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATATGGAGTTCATTCCC
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
** * ** *
14127369 AATCTAAGATCAAACCAGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGGAGGGGGGACTGGG
66 AATCTAAGATCAAACCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACGCAAAGGGGACAGGG
* * * * * * *
14127434 CTGATCCTCGGCTTGCGCATTCTGCTTCTCCGGCCGGCTGAGCACCTGCACGCC
131 CCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCTGCAAGCC
* *
14127488 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
14127523 TCCACGTCTA
Statistics
Matches: 191, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 191 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
AATCTAAGATCAAACCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACGCAAAGGGGACAGGG
CCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCTGCAAGCC
Found at i:14127734 original size:159 final size:158
Alignment explanation
Indices: 14127356--14128049 Score: 498
Period size: 159 Copynumber: 4.3 Consensus size: 158
14127346 CTAAGGATAT
* * * * *
14127356 GGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAAGATCGGCAGCACGC
* * * * * * * *
14127421 AG-GGGGGA-CTGGGCTGATCCTCGGCTTGCGCATTCTGCTTCTCCGGCCGGCTGAGCACCTGCA
66 AGAGAGGGATCT-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTC-GCTGAGCGCCAGCA
* * * *
14127484 CGCCCATTTCATGGGTTGGCTTAGGCATAG
129 CGCTCGTTTCATGAGTTGGCTTAGGCATAC
* * * * * * *
14127514 GGAGTTCATT-CCACGTCTAA-ACCCCAG-TCGGACCGACGATTATGGTAGCAAGACCGGCAGCA
1 GGAGTTCATTCCCA-GTCTAAGA--TCAGACCGGACTGAGGGTTGTGGTAGCAAGATCGGCAGCA
* * *
14127576 CGCAGAGAGGGATC-GGACCGATCCCCTGCTTGCGCATTATGCCTCTCTGGTCTGCTCAGCGCCA
63 CGCAGAGAGGGATCTGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTC-GCTGAGCGCCA
*
14127640 GCACGCTCGTTTCATGAGTTGACTTAGGCATAC
126 GCACGCTCGTTTCATGAGTTGGCTTAGGCATAC
* * * * *
14127673 GGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGCAGGATCGACAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAAGATCGGCAGCACGC
* * * * * * * *
14127738 AGACA-GG-TCTGGTCGGTCCCCGGTTTGTGCATTCTACCTCT-TCGGTCGACTGAGCGCCCGTA
66 AGAGAGGGATCTGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGTCG-CTGAGCGCCAGCA
*
14127800 CGCTCGTTTCA-CAGGTTGGCTTAGGCATAC
129 CGCTCGTTTCATGA-GTTGGCTTAGGCATAC
* * *
14127830 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGACAGTAGGACCAGTAGCAGGA
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTG---GTA-G--C---A--A-GA
* * * * * * * * * * *
14127895 TCGACAGCACGTAG-GGGGGACCGGGCCAATCCTCGGCTTACGTATTCTGCCTCTCCGGTCGGTT
54 TCGGCAGCACGCAGAGAGGGATCTGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTC-GCT
* *
14127959 GAGCGCCTGCACGCTCGTTTCGTTG-GTTGGCTTAGGCATAC
118 GAGCGCCAGCACGCTCGTTTC-ATGAGTTGGCTTAGGCATAC
** * *
14128000 GGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGTAGCA
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGTAGCA
14128050 GGACCGGTAA
Statistics
Matches: 419, Mismatches: 84, Indels: 63
0.74 0.15 0.11
Matches are distributed among these distances:
156 3 0.01
157 107 0.26
158 55 0.13
159 118 0.28
160 8 0.02
161 2 0.00
163 1 0.00
164 1 0.00
166 2 0.00
167 3 0.01
169 21 0.05
170 94 0.22
171 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAAGATCGGCAGCACGC
AGAGAGGGATCTGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGCTGAGCGCCAGCACG
CTCGTTTCATGAGTTGGCTTAGGCATAC
Found at i:14128207 original size:26 final size:26
Alignment explanation
Indices: 14128178--14128230 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14128168 GTTGACTTAG
14128178 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14128204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14128230 G
1 G
14128231 AGCGATCCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14128520 original size:159 final size:159
Alignment explanation
Indices: 14128204--14128707 Score: 387
Period size: 159 Copynumber: 3.2 Consensus size: 159
14128194 CCTAGTCTAA
** * * * * * * *
14128204 GCATACGGAGTTCATTCCCA-GTCTAAGAGCGATCCCGACCGAAGGTTACGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAAGGTTGCGGTAGCAGGACCGAC
** ** * * * * * * *
14128268 AGCATGC-GGGGGGGATCGGGCCGATCCCCGGATTAAGCATTCTGCCTCTC-CAACCG-ACTGAG
65 AGCACACAAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTCTCAACGGCAC--AG
* * * * * * *
14128330 CGCCCGCACGCCCATTTCATGGGCTGGCTTAG
128 CACCCACACGCTCGTTTCACGGGTTGACTTAG
*
14128362 GCATA-GAGAGTTCATTCCATGTCTAAGCCCCAACCGGA-TCGAAGGTTGCGGTAGCGGGACCGA
1 GCATACG-GAGTTCATTCCATGTCTAAGCCCCAACCGGACT-GAAGGTTGCGGTAGCAGGACCGA
*
14128425 TAGCACACAAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTC-CAACTGGCACAG
64 CAGCACACAAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTCTCAAC-GGCACAG
*
14128489 CACCCGA-ACGTTCGTTTCACGGGTTGACTTAG
128 CACCC-ACACGCTCGTTTCACGGGTTGACTTAG
** ** * * * *
14128521 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAAGGTTGCGGTAGCAGGACCGAC
* *** * * * * * ** **
14128585 AGCACGCGGGGGGGGATCGGGCCGGTCCCTGGCTTTCGCATTTTGCCTCTCTGGACGGCTGAGCA
65 AGCACACAAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTCTCAACGGCACAGCA
** *
14128650 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCACACGCTCGTTTCACGGGTTGACTTAG
14128680 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
14128708 ATATAGAGTT
Statistics
Matches: 275, Mismatches: 58, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 55 0.20
159 206 0.75
160 8 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAAGGTTGCGGTAGCAGGACCGACA
GCACACAAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTATGCCTCTCTCAACGGCACAGCAC
CCACACGCTCGTTTCACGGGTTGACTTAG
Found at i:14129454 original size:26 final size:26
Alignment explanation
Indices: 14129417--14129473 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
14129407 GTTGATTTAG
*
14129417 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGAAGTTCAAT-CCCAGTCTAA
14129443 GCATACGAAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
14129469 G-ATAC
1 GCATAC
14129474 AATCGGACCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 4 0.14
26 23 0.79
27 2 0.07
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:14129702 original size:514 final size:517
Alignment explanation
Indices: 14128713--14129705 Score: 1168
Period size: 514 Copynumber: 1.9 Consensus size: 517
14128703 TAAGCATATA
* * ** *
14128713 GAGTTCATTCCCAGTCTGAGATCAGACCAGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGAT
1 GAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGACCAGCAGCAGGAT
** * *
14128778 CGGTAGCACACTGGGGGGGACCAGGCTGATCCCCGACTTGCATATTCTGCCTCTCCTGTCGGCCG
66 CGGTAGCACACTAAGGGGGACCAGGCTGATCCCCGACTTGCATATTCTGCCTCTCCTGCCAGCCG
* ** *
14128843 TTTCGGTCGGCTGAGCACCCCGTTCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
131 TCTCGGTCGGCTGAGCACCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* * *
14128908 CCAGTCTAAGCGTACATAGTTCATTCCCAGTCAAAGATCGAACCGGATCGAGGGTTGCGACAGCA
196 CCAGTCTAAGCATACATAGTTCAATCCCAGTCAAAGATCGAACCGGACCGAGGGTT---------
* *
14128973 GGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACCTG
252 -G-TCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACCTA
* * ** ** * *
14129038 CTGAGCGCCCCCACGTCTGTTTTATCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGC
315 CTGAGCACCCCCACGCCCATTAAATCGGTTGGCTTAGGCATAGAGAGTTCATTCAATGCCTAAGC
* * *
14129103 CCCAGCTGAACCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGATCGGGCTGATCCC
380 CCCACCAGAACCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGGGCTGATCCC
*
14129168 CGACTTGCGCATTATGCCTCTCCGGTCGGTTCAGTGCTCGAACGCTCATTTCATGGGTCGACTTA
445 CGACTTGAGCATTATGCCTCTCCGGTCGGTTCAGTGCTCGAACGCTCATTTCATGGGTCGACTTA
14129233 GGCATACG
510 GGCATACG
* * *
14129241 GAGTTCACTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGACAGCAAGACTAGCAGCAGGAT
1 GAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGACCAGCAGCAGGAT
* * * * *
14129306 TGGTAGCACGC-AAGGGGGACC-GGGTCGATCTTCGGA-TTACGCAT-TT-TGCCTCTCC-GACC
66 CGGTAGCACACTAAGGGGGACCAGGCT-GATC-CCCGACTT--GCATATTCTGCCTCTCCTG-CC
* *
14129365 AGCC-TCTCTGGTCGGCTGAGCA-CCCGCACGCTCATTTTATGGGTTGATTTAGGCATACGGAGT
126 AGCCGTCTC-GGTCGGCTGAGCACCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
* *
14129428 TCATCCCCAGTCTAAGCATACGA-AGTTCAATCCCAGTCTAAGATAC-AATCGGACCGAGGGTT-
190 TCATCCCCAGTCTAAGCATAC-ATAGTTCAATCCCAGTCAAAGAT-CGAACCGGACCGAGGGTTG
* * * * * *
14129490 TCGACAGCACGCAGGGGGGATCGGGCTGATCTCCGACTTGCGCATTCTGCCTCTCTG-GCTAATT
253 TCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACCT-ACT
** * *
14129554 GAGCACCTGCACGCCCATTAAATGGGTTGGCTTAGGCATAGAGAGTTCATTTAAT-CTCTAAGCC
317 GAGCACCCCCACGCCCATTAAATCGGTTGGCTTAGGCATAGAGAGTTCATTCAATGC-CTAAGCC
* * * *
14129618 CCAACCAG-ACCGAGGGTTGTGGCAGTGCGATCGACAGCACGTAGAGGGGGACCGGGCTGATCCT
381 CC-ACCAGAACCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGGGCTGATCCC
* *
14129682 CGGCTTGAGCATTCTGCCTCTCCG
445 CGACTTGAGCATTATGCCTCTCCG
14129706 ACTGACTGAG
Statistics
Matches: 396, Mismatches: 58, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
513 3 0.01
514 177 0.45
515 3 0.01
526 96 0.24
527 42 0.11
528 71 0.18
529 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (517 bp):
GAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGACCAGCAGCAGGAT
CGGTAGCACACTAAGGGGGACCAGGCTGATCCCCGACTTGCATATTCTGCCTCTCCTGCCAGCCG
TCTCGGTCGGCTGAGCACCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGCATACATAGTTCAATCCCAGTCAAAGATCGAACCGGACCGAGGGTTGTCGACAGC
ACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACCTACTGAGCACCCC
CACGCCCATTAAATCGGTTGGCTTAGGCATAGAGAGTTCATTCAATGCCTAAGCCCCACCAGAAC
CGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGGGCTGATCCCCGACTTGAGCA
TTATGCCTCTCCGGTCGGTTCAGTGCTCGAACGCTCATTTCATGGGTCGACTTAGGCATACG
Found at i:14130866 original size:159 final size:159
Alignment explanation
Indices: 14130508--14130872 Score: 362
Period size: 159 Copynumber: 2.3 Consensus size: 159
14130498 GGACTGGATT
* * * * * *
14130508 GAGGGTTGCGACAGTAAGATTGGCAGCACGCAGGG-GGGACCGGGCTGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGGGAGGGACCGGGCCGATCCCCGACTTGCGCAT
* * * * ** * * *
14130572 TCTGCCTCTCCAGTCGGCTGAGTGCCCTCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
66 TATGCCTCTACAGTCGGCTCAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGT
* *
14130637 TCATTCCATGTCTAAGCACTAGTCGGACT
131 TCATTCCATGTCTAAGCACTAGCCGGACC
* * * * ** * * *
14130666 GAGGGTTGTGGCAGTAGGACCGGTAACACGTAAAGAAGGACCAGGCCGATCCCCGACTTGTGCAT
1 GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGGGAGGGACCGGGCCGATCCCCGACTTGCGCAT
* * * *
14130731 TATG-CTACTACGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATCCGAAG
66 TATGCCT-CTACAGTCGGCTCAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGAAG
*
14130795 TTCATTCCCA-GTCTATG-A-TCAGACCGGACC
130 TTCATT-CCATGTCTAAGCACT-AG-CCGGACC
* *
14130825 GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGAGGGACCGGGCCG
1 GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGGGAGGGACCGGGCCG
14130873 GTCCTCGGGT
Statistics
Matches: 161, Mismatches: 41, Indels: 9
0.76 0.19 0.04
Matches are distributed among these distances:
157 1 0.01
158 30 0.19
159 127 0.79
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.21
Consensus pattern (159 bp):
GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGGGAGGGACCGGGCCGATCCCCGACTTGCGCAT
TATGCCTCTACAGTCGGCTCAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGT
TCATTCCATGTCTAAGCACTAGCCGGACC
Found at i:14130979 original size:26 final size:26
Alignment explanation
Indices: 14130943--14131021 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14130933 GTTGGCTTAG
*
14130943 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14130969 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14130995 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14131021 G
1 G
14131022 ATCGGATCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14132684 original size:158 final size:158
Alignment explanation
Indices: 14132176--14132706 Score: 514
Period size: 158 Copynumber: 3.4 Consensus size: 158
14132166 GACTGAGCGT
* * * * *
14132176 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATTGGACTG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACTG
** * * *
14132241 GATTGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGGGGGGA-TCGGGCCGATCCCCGGCTTGC
66 GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGACT-GGGCCGATCTCTGGCTTGC
* **
14132305 GCATTCTGCCTCT-TCAGTCGACTGAGTGC
130 GCATTCTGCCTCTCT-AGTCGGCTGAGCAC
* * * * ** * **
14132334 CCTCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACTG
* * * * *
14132399 GACCGAGGGTTGTGGCAGCAGGA-CTGGCAGTATGCAGAGGGGGACCGGGCCGATCAT-TGGCTT
66 GACCGAGGGTTGCGGTAGCAGGATC-GGCAGCACGCAG-GGGGGACTGGGCCGATC-TCTGGCTT
** * ** *
14132462 ATGCATTATGCCTCTCCGGTCGGCTCAGCAC
128 GCGCATTCTGCCTCTCTAGTCGGCTGAGCAC
* * * * * * *
14132493 CTGAACACTCGTTTCGTGGGTTGACTTACGCATACGGGGTTCATTCC-TAGTCTAAGATCGAACC
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCGAACT
** * * * *
14132557 AAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGGTCGGTCTCTGACTTGC
65 GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGACTGGGCCGATCTCTGGCTTGC
*
14132622 GCATTCTGCCTCTCTAGTAGGCTGAGCAC
130 GCATTCTGCCTCTCTAGTCGGCTGAGCAC
* * * *
14132651 CCGCACGCTCGTTTCATGGGTTGGCTCAGGCATACGAAGTTCATTCTATGTCTAAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
14132707 CATACGGAGT
Statistics
Matches: 287, Mismatches: 77, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 167 0.58
159 117 0.41
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACTG
GACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGACTGGGCCGATCTCTGGCTTGCG
CATTCTGCCTCTCTAGTCGGCTGAGCAC
Found at i:14132729 original size:26 final size:26
Alignment explanation
Indices: 14132680--14132732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14132670 GTTGGCTCAG
*
14132680 GCATACGAAGTTCATTCTATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
14132706 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
14132732 G
1 G
14132733 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14132919 original size:26 final size:26
Alignment explanation
Indices: 14132889--14132938 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14132879 GTTGACTTAG
14132889 GCATACAGAGTTCA-TCCTCAGTCTGA
1 GCATACAGAGTTCATTCC-CAGTCTGA
*
14132915 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
14132939 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:14133377 original size:158 final size:157
Alignment explanation
Indices: 14132915--14133416 Score: 564
Period size: 158 Copynumber: 3.2 Consensus size: 157
14132905 CTCAGTCTGA
* *
14132915 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATAGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCAGGATAGAC
* * * * *
14132979 AGCACATAGGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGC
64 AGCACGTAAGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
14133044 CCGCACGCCCATTTCA--CATTTTGGCTTAT
129 CCGCACGCTCGTTTCATGCA--TTGGCTTAG
* ** ** * * * **
14133073 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCGGACCGAGGGTTGCGGCAGCAGGATAGACA
* * ** * * *
14133138 GCACGCAGAGGGGGACCG-GACTGATCCCTGACTGGCGCATTATGCCTCTCCGACCGGCTCAGCA
65 GCACGTA-AGGGGGACCGAG-CTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
14133202 CCCGCACGCTCGTTTCATGCATTGGCTTAG
128 CCCGCACGCTCGTTTCATGCATTGGCTTAG
* * *
14133232 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCAGGATAGAC
* * * *
14133296 AACACGTAAGGGGGACCGAGCCGGTCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
64 AGCACGTAAGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
**
14133361 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGCATTGGCTTAG
14133390 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14133417 CATACGCAGT
Statistics
Matches: 282, Mismatches: 52, Indels: 20
0.80 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 149 0.53
159 122 0.43
160 3 0.01
161 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCGGACCGAGGGTTGCGGCAGCAGGATAGACAG
CACGTAAGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCATGCATTGGCTTAG
Found at i:14133440 original size:26 final size:26
Alignment explanation
Indices: 14133390--14133442 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14133380 GTTGGCTTAG
* *
14133390 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGCAGTTCATTCCATATCTAA
14133416 GCATACGCAGTTCATTCCCA-ATCTAA
1 GCATACGCAGTTCATT-CCATATCTAA
14133442 G
1 G
14133443 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCATATCTAA
Found at i:14133793 original size:26 final size:26
Alignment explanation
Indices: 14133757--14133809 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14133747 GTTGGCTTAG
14133757 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14133783 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14133809 G
1 G
14133810 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14134290 original size:26 final size:26
Alignment explanation
Indices: 14134254--14134304 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14134244 TTCGCTTAGG
14134254 CATAAGGAGTTCATTCC-ATGTCTAAA
1 CATAAGGAGTTCATTCCTA-GTCTAAA
*
14134280 CATACGGAGTTCATTCCTAGTCTAA
1 CATAAGGAGTTCATTCCTAGTCTAA
14134305 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCTAGTCTAAA
Found at i:14134491 original size:26 final size:26
Alignment explanation
Indices: 14134461--14134513 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14134451 GTTGACTTAG
14134461 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
14134487 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14134513 G
1 G
14134514 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14135433 original size:26 final size:26
Alignment explanation
Indices: 14135381--14135433 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14135371 ATTGGCTTAG
*
14135381 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
14135407 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
14135433 G
1 G
14135434 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14135934 original size:26 final size:26
Alignment explanation
Indices: 14135904--14135956 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14135894 GTTGGCTTAC
14135904 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
14135930 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14135956 G
1 G
14135957 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14136471 original size:26 final size:26
Alignment explanation
Indices: 14136441--14136493 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14136431 GTTGGCTTAG
14136441 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATATGAAGTTCATTCCCA-GTCTAA
*
14136467 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
14136493 G
1 G
14136494 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:14137530 original size:159 final size:158
Alignment explanation
Indices: 14137208--14137714 Score: 366
Period size: 159 Copynumber: 3.1 Consensus size: 158
14137198 TAAGCAAATA
* **
14137208 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGCAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACGATAGCAGGATCGACAGCACGCA
* * * ** * *
14137273 AGGGGGATCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGTCTGCATGC
66 AGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGC
* *
14137338 TCGTTTTGTGGGTTGACTTAGGCATACC
131 TCATTTCGTGGGTTGACTTAGGCATACC
* * *
14137366 GAGTTCATTCCCAGTCTAAGATCAAACTGGA-CTGAGGGTTGCGATAGCAGGATCGACAGCATG-
1 GAGTTCATTCCCAGTCTAAGATCAAACCGGATC-GAGGGTTACGATAGCAGGATCGACAGCACGC
* * * * ** *
14137429 TAGGTGGCGACC-AGGCCGGTCCCTGTCTTGCGCATTCTGCCTCT-TTGACCGGCTGAGCACCCG
65 AAGG-GG-GACCGA-GCCGATCCCTGGCTTGCGCATTATGCCTCTCCAG-CCGGCTCAGCACCCG
*
14137492 CACGCTCATTTCGTGGGTTTG-CTTTGGCATA-C
126 CACGCTCATTTCGTGGG-TTGACTTAGGCATACC
*** * * * *
14137524 GAAGTTCATTCCCAGTCTAAGATTGGATCAGA-CTGAGGGTTACGGTAGCAGGACCAGTGACAAG
1 G-AGTTCATTCCCAGTCTAAGATCAAACCGGATC-GAGGGTTACGATAGCAGGATC---GAC-AG
* * * * * * *
14137588 ATCGACAGCATGCAGGGGGGGATCGGGCCGATCCCTGACTTGCACA-TCTGCCTCTCC-GACTGA
60 --C-AC-GCA---A--GGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAG-CCGG
* * * * *
14137651 CTGAGCACCCACACGCTCGTTTCGGGGGTTGACTTAGGCATACG
115 CTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACC
*
14137695 GAGTTCATCCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
14137715 CATACGGAGA
Statistics
Matches: 276, Mismatches: 48, Indels: 38
0.76 0.13 0.10
Matches are distributed among these distances:
157 4 0.01
158 61 0.22
159 106 0.38
160 3 0.01
162 3 0.01
163 2 0.01
165 1 0.00
166 1 0.00
167 1 0.00
169 3 0.01
170 65 0.24
171 22 0.08
172 2 0.01
173 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACGATAGCAGGATCGACAGCACGCA
AGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACC
Found at i:14137728 original size:26 final size:26
Alignment explanation
Indices: 14137688--14137738 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14137678 GTTGACTTAG
*
14137688 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* *
14137714 GCATACGGAGATCATTCCTAGTCTA
1 GCATACGGAGATCATCCCCAGTCTA
14137739 GGATTAGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:14138068 original size:26 final size:25
Alignment explanation
Indices: 14138032--14138081 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
14138022 TGGCTTGGGT
14138032 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCA-GTCTAAGC
14138058 ATACGGAGTTCATTCCAGTCTAAG
1 ATACGGAGTTCATTCCAGTCTAAG
14138082 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (25 bp):
ATACGGAGTTCATTCCAGTCTAAGC
Found at i:14138780 original size:26 final size:26
Alignment explanation
Indices: 14138751--14138803 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14138741 GTTGACTTAG
*
14138751 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14138777 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14138803 G
1 G
14138804 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14139212 original size:52 final size:52
Alignment explanation
Indices: 14139128--14139227 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
14139118 AAGATTGGAT
* *
14139128 CGGACCGAGGGTTACGGTAGCAGGATCTACAGCACGCAGAGAGGGACCGAGC
1 CGGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGAGAGGGACCGAGC
* *
14139180 CGGATCGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGAGGGACC
1 CGGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGAGAGGGACC
14139228 AGCTTATGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.39, T:0.10
Consensus pattern (52 bp):
CGGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGAGAGGGACCGAGC
Found at i:14139702 original size:26 final size:26
Alignment explanation
Indices: 14139672--14139724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14139662 GTTGACTTAG
14139672 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14139698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14139724 G
1 G
14139725 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14140101 original size:21 final size:21
Alignment explanation
Indices: 14140059--14140101 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14140049 GCGCACATGA
* *
14140059 TGTGTGATGGGTGCTAGTACT
1 TGTGTCATGGGTGCGAGTACT
14140080 TGTGTCATGGGCTGCGAG-ACT
1 TGTGTCATGGG-TGCGAGTACT
14140101 T
1 T
14140102 AGAAAGCGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.14, C:0.14, G:0.37, T:0.35
Consensus pattern (21 bp):
TGTGTCATGGGTGCGAGTACT
Found at i:14146408 original size:26 final size:26
Alignment explanation
Indices: 14146378--14146430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14146368 GTTGAATTAG
*
14146378 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14146404 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14146430 G
1 G
14146431 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14146706 original size:158 final size:157
Alignment explanation
Indices: 14146499--14146905 Score: 413
Period size: 158 Copynumber: 2.6 Consensus size: 157
14146489 CAATTGTCGG
* * *** * * ** * *
14146499 CTTGCGCATTCTGCCTCTCCGACAAACTGAGCACCCGCACGCCCGTTTCGTGGGTGGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGATCATTTCGTGGGTTGGCTTAGGC
* * * * *
14146564 ATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CGGATCGAGGGTTGTGCCAGCGGGACCGGCAGC
66 ATACGGAGTTCATTCCATGTCTAAGCCC-AGACGGACCGAGGGTTGCGCCAGCAGGACCGACAGC
* *
14146628 ACGCAGAGGGGGATCAGACCGATCCCCGA
130 ACGCA-AGAGGGACCAGACCGATCCCCGA
* * *
14146657 CTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGTACGATCATTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGATCATTTCGTGGGTTGGCTTAGGC
** * * *
14146722 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
66 ATACGGAGTTCATT-CCATGTCTAAGCCCAGA-CGGACCGAGGGTTGCGCCAGCAGGACCGACAG
* * *
14146786 CACGCAAGAGGGACCAGGCTGATCCCCGG
129 CACGCAAGAGGGACCAGACCGATCCCCGA
* * ** * * * * *
14146815 CTTGCGGATTTTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGT
1 CTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGATCATTTCGTGGGTTGGCTTAGGC
*
14146880 ATACGGAGTTCATTCAATGTCTAAGC
66 ATACGGAGTTCATTCCATGTCTAAGC
14146906 ATACAGAGTT
Statistics
Matches: 202, Mismatches: 43, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
157 4 0.02
158 164 0.81
159 34 0.17
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
CTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGATCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCAGACGGACCGAGGGTTGCGCCAGCAGGACCGACAGCA
CGCAAGAGGGACCAGACCGATCCCCGA
Found at i:14147265 original size:26 final size:26
Alignment explanation
Indices: 14147235--14147288 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14147225 TGGGTTGACT
14147235 TAGGCATACGGAGTTCA-TCCGCAGTC
1 TAGGCATACGGAGTTCATTCC-CAGTC
14147261 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
14147287 TA
1 TA
14147289 AGATCCGACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Done.