Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 105 of 402
Found at i:14147322 original size:360 final size:349
Alignment explanation
Indices: 14146612--14147481 Score: 834
Period size: 360 Copynumber: 2.5 Consensus size: 349
14146602 AGGGTTGTGC
* * * * * *
14146612 CAGCGGGACCGGCAGCACGCAGAGGGGGATCAGACCGATCCCCGACTTGCGCATTATGCCTCTCC
1 CAGCAGGACCGGCAGCACGCAGA-GGGGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCC
* ** ** * * **
14146677 GGCCGGCTCAGTGCCCGTACGATCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
65 GGCCGGCTGAGCACCCACACG-CCAGTTTCGTGGGTTGCCTTAGGCATACAAAGTTCATT-CCAT
** * * * * *
14146740 GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGTA-G----G-ATCGACAGCACGCA-AGAGG
128 GTCTAAGCCCCAG-CCGAACCAAGGGTTGTGGCAGTAGGACCAGCATCGGCAGCACGCAGAGGGG
* * * * * ** * * * * * *
14146797 GACCAGG-CTGATCCCCGGCTTGCGGATTTTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGT
192 GACCGGGTC-AATCCCTGGCTTGTGTATTACGCATCTCCGGTCGACTGAGCACCCACACACTCGT
* * *
14146861 TTCATGGGTTGGCTTAGGTATACGGAGTTCATTCAATGTCTAAGCATACAGAGTTCATTCCCAGT
256 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCAATGTCTAAGCATACAGAGTTCATTCCCAGT
* *
14146926 CTAAGATCAGACCGAATCGAGGGTTGCGA
321 CTAAGATCAGACCGAATCAAGGGTTACGA
* *
14146955 CAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCACAT
1 CAGCAGGACC-G--GC-AG--C-AC-GCA-G-A--GGGGACCAGGCCGATCCCCGACTTGCACAT
* * * *
14147020 TCTACCTCTCCGGTCGGTTGAGCACCCACACTCTAGTTT-GTGGGTTGCCTTAGGCATACAAAGT
54 TCTACCTCTCCGGCCGGCTGAGCACCCACACGCCAGTTTCGTGGGTTGCCTTAGGCATACAAAGT
*
14147084 TCATTCCATGTCTAAGCCCCAGCCGAACCTAGGGTTGTGGCAGTAGGACCAGCATCGGCAGCACG
119 TCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGTAGGACCAGCATCGGCAGCACG
14147149 CAGAGGGGGACCGGGTCAATCCCTGGCTTGTGTATTACGCATCTCCGGTCGACTGAGCACCCACA
184 CAGAGGGGGACCGGGTCAATCCCTGGCTTGTGTATTACGCATCTCCGGTCGACTGAGCACCCACA
* * *
14147214 CACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCGCA-GTCTAGGCATACGGAGTTCA
249 CACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC-AATGTCTAAGCATACAGAGTTCA
* *
14147278 TTCCCAGTCTAAGATCCGACCAGACT-AAGGGTTAC-A
313 TTCCCAGTCTAAGATCAGACC-GAATCAAGGGTTACGA
* * * * * **
14147314 GTAGCAGGATCGGCAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTTTTT
1 -CAGCAGGACCGGCAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCC
* * * ***
14147379 GGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GGCCGGCTGAGCACCCACACGCCAGTTTCGTGGGTTGCCTTAGGCATACAAAGTTCATTCCATGT
* * * *
14147444 CTATGCCCCAGTCGGACCAAGGGTTGTGGCAGTCGGAC
130 CTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGTAGGAC
14147482 AGGCAGCATG
Statistics
Matches: 426, Mismatches: 75, Indels: 46
0.78 0.14 0.08
Matches are distributed among these distances:
343 9 0.02
344 1 0.00
346 2 0.00
347 2 0.00
348 56 0.13
349 66 0.15
350 3 0.01
351 4 0.01
352 7 0.02
353 58 0.14
354 56 0.13
356 2 0.00
357 2 0.00
358 1 0.00
359 15 0.04
360 137 0.32
361 5 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (349 bp):
CAGCAGGACCGGCAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCG
GCCGGCTGAGCACCCACACGCCAGTTTCGTGGGTTGCCTTAGGCATACAAAGTTCATTCCATGTC
TAAGCCCCAGCCGAACCAAGGGTTGTGGCAGTAGGACCAGCATCGGCAGCACGCAGAGGGGGACC
GGGTCAATCCCTGGCTTGTGTATTACGCATCTCCGGTCGACTGAGCACCCACACACTCGTTTCAT
GGGTTGACTTAGGCATACGGAGTTCATCCAATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
ATCAGACCGAATCAAGGGTTACGA
Found at i:14147620 original size:159 final size:157
Alignment explanation
Indices: 14147261--14147629 Score: 350
Period size: 159 Copynumber: 2.3 Consensus size: 157
14147251 ATCCGCAGTC
* * * * *
14147261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACTAAGGGTTACAGTAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCAAGGGTTGCAGCAGCAGGATCG
* * * *** *
14147326 GCAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTTTTTGGCCGGCTGAGC
65 GCAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCCGCCGGCTCAGC
* *
14147391 ACCCGCACGCCCGTTTCGTGGGTTGGCT
130 ACCCGCACGCCCATTTCGTGGGTTGACT
* * ** * **
14147419 TAGGCATAGGGAGTTCATT-CCATGTCTATGCCCCAGTCGGACCAAGGGTTGTGGCAGTC-GGA-
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCAAGGGTTGCAGCAG-CAGGAT
* * * * * *
14147481 CAGGCAGCATGCAGAGGGGGATC-GAGTCGTTCCCCGACTTGCGCATTATGCCTCTCCCGCTGGC
63 C-GGCAGCACGCAGA-GGGGACCAG-GCCGATCCCCGACTTGCGCATTATACCTCTCCCGCCGGC
* * * *
14147545 TCAGCGCCTGCACGCTCATTTTGTGGGTTGACT
125 TCAGCACCCGCACGCCCATTTCGTGGGTTGACT
*
14147578 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCAAGGGTTGC
14147630 GGTAGCAAGA
Statistics
Matches: 165, Mismatches: 38, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 58 0.35
159 100 0.61
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCAAGGGTTGCAGCAGCAGGATCGG
CAGCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCCCGCCGGCTCAGCA
CCCGCACGCCCATTTCGTGGGTTGACT
Found at i:14147776 original size:26 final size:26
Alignment explanation
Indices: 14147740--14147792 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14147730 GTTGGCTTAG
14147740 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
*
14147766 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
14147792 G
1 G
14147793 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:14148151 original size:26 final size:26
Alignment explanation
Indices: 14148121--14148173 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14148111 GTAGACTTAG
14148121 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
14148147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
14148173 G
1 G
14148174 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:14148508 original size:159 final size:158
Alignment explanation
Indices: 14148147--14148535 Score: 371
Period size: 159 Copynumber: 2.5 Consensus size: 158
14148137 CCCAGCCTAA
* *
14148147 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGA-TCGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACT-GAGGGTTGTGGCAGCAGGATCGA
* * * * * * * *
14148210 CAGCACGCAGGGGTGACCGGGCCGATCCCAGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCG
64 CAGCACGCAGGGGTGACCAGGCCGATCCCAGACTTGCGCATTATGCCTCTCCGATCGACTGAGCA
* *
14148275 CCCGCACACCCATTTCATGGGTTGGCTTAG
129 CACGCACACCCATTTCATGGGTTGACTTAG
* * ** * * *
14148305 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGA-CGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTAGACTGAGGGTTGTGGCAGCAGGATC-G
* * * *
14148367 GCAGCACGCAAAGGGGT-ACCAGGCCGATCCCCGACTTGCGTATTATGCCTCTTCGATCGAC-GC
63 ACAGCACGC--AGGGGTGACCAGGCCGATCCCAGACTTGCGCATTATGCCTCTCCGATCGACTG-
* * * * *
14148430 AGCACATGCACGCTCGTTTCATGGGTTGACTTAT
125 AGCACACGCACACCCATTTCATGGGTTGACTTAG
* *
14148464 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCT-GCTGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTG-TGGCAGCAGGATCGAC
14148528 AGCACGCA
65 AGCACGCA
14148536 AGGGCGGATC
Statistics
Matches: 181, Mismatches: 38, Indels: 25
0.74 0.16 0.10
Matches are distributed among these distances:
157 5 0.03
158 54 0.30
159 111 0.61
160 11 0.06
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGTGACCAGGCCGATCCCAGACTTGCGCATTATGCCTCTCCGATCGACTGAGCACA
CGCACACCCATTTCATGGGTTGACTTAG
Found at i:14148510 original size:883 final size:858
Alignment explanation
Indices: 14146360--14148512 Score: 2563
Period size: 883 Copynumber: 2.5 Consensus size: 858
14146350 CGCACCCTTA
* *
14146360 TTTCATGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
14146425 TCTAAGATTGGACCGGACTGAGGGTTACGGCAGCAGGATCGGTAGCACCCAGGGGGGACCGGGCC
66 TCTAAGATCGGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCA-GGGGGACCGGGCC
* ** * ** *
14146490 AATTGTCGGCTTGCGCATTCTGCCTCTCCGACAAACTGAGCACCCGCACGCCCGTTTCGTGGGTG
130 GA-TCCCGGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACGCCCGTTTCGTGGGTT
* * *
14146555 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCGGATCGAGGGTTGTGCCAGCGGGA
194 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGGTTGTGGCAGCGGGA
* * **
14146620 CCGGCAGCACGCAGAGGGGGATCAGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCT
259 CAGGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCT
* * * *
14146685 CAGTGCCCGTACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
324 CAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * *
14146750 AGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAAGAGGGACCAGGCTGATCCCCGG
389 AGACTGGACCGAGGGTTGCGGCAGCAAGATCGACAAAACACAAGAGGGACCAGGCTGAACCCCGG
* * ** * * * *
14146815 CTTGCGGATTTTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGT
454 CATACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGC
* *
14146880 ATACGGAGTTCATTCAATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
519 ATACGGAGTTCATTCAATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGACCGAACCG
** * *
14146945 AGGGTTGCGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTG
584 AGCATTACGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCG
** ** * *
14147010 ACTTGCACATTCTACCTCTCCGGTCGGTTGAGCACCCACACTCTAGTTTGTGGGTTGCCTTAGGC
649 ACTTGCACATTCTACCTCTCCGACCGACTGAGCACCCACACGCTAGTTTATGGGTTGCCTTAGGC
* **
14147075 ATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGAACCTAGGGTTGTGGCAGTAGGACCAGCATC
714 ATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAACAGGACCAGCATC
* * * * *
14147140 GGCAGCACGCAGAGGGGGACCGGGTCAATCCCTGGCTTGTGTATTACGCATCTCCGGTCGACTGA
779 GACAGCACGCAGAAGGGGACCAGGTCAATCCCTGGCTTATGTATGACGCATCTCCGGTCGACTGA
*
14147205 GCACCCACACACTCG
844 ACACCCACACACTCG
* *
14147220 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCGCAGTCTAGGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
14147285 TCTAAGATCCGACCAGACTAAGGGTTACAGTAGCAGGATCGGCAGCACGCAGAGGGGACCAGGCC
66 TCTAAGATCGGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAG-GGGGACCGGGCC
* * ** *
14147350 GATCCCCGGCTTGCGCATTCTACCTTTTTGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTT
130 GAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACGCCCGTTTCGTGGGTT
* *
14147415 GGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGGACCAAGGGTTGTGGCAGTC-G
194 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGGGTTGTGGCAG-CGG
* * * *
14147479 GACAGGCAGCATGCAGAGGGGGATC-GAGTCGTTCCCCGACTTGCGCATTATGCCTCTCCCGCT-
257 GACAGGCAGCACGCAGAGGGGGATCAG-GCCGATCCCCGACTTGCGCATTATGCCTCT-CCGATC
*
14147542 GGCTCAGCGCCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
320 GGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
14147607 GATCAGACTGGACCGAGGGTTGCGGTAGCAAGATCGACAAAACATAGGGTGGGATCGGGCTGAAC
385 GATCAGACTGGACCGAGGGTTGCGGCAGCAAGATCGACAAAACACA-AGAGGGACCAGGCTGAAC
* * * **
14147672 CCTGGCATACACATTCTGCCTCTTCGGTCGGCTGAGCGCCCATACGCTCGTTTTGTGGGTTGGCT
449 CCCGGCATACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCT
* ** * *
14147737 TAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCGGATCG
514 TAGGCATACGGAGTTCATTCAATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGACCG
* * ** **
14147802 AACCGAGCATTAC-AGCAGCAGGACCAGTAGCAGGATCGGTAGCACGCAGGCGGGGACCGGGTTG
579 AACCGAGCATTACGA-CAGCAGGACCAGCAGCAAGATCGACAGCACGCAGG-GGGGACCGGGCCG
* ** * * * ** * *
14147866 ATCCCCGGCTTGTGCATTCTGCCTTTCTGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTG
642 ATCCCCGACTTGCACATTCTACCTCTCCGACCGACTGAGCACCCACACGCTAGTTT-ATGGGTTG
* *
14147931 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAACAGG
706 CCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCGAGGGTTGTGGCAACAGG
* **
14147995 ATCGGCAGCGGGATCGACAGCACGCAGAAGGGGATCAGGTTGATCCCCAGCTTGCGCATTATGCC
770 A-C--CAGC---ATCGACAGCACGCAGAAGGGGACCAGGTCAAT--CC--C-TG-GC-TTATG--
* * * ** **
14148060 TCTCCGACCAGCCTCTCCGGTCGGCTGAATGCCCGTACACTCG
820 TAT--GA-C-GCATCTCCGGTCGACTGAACACCCACACACTCG
* *
14148103 TTTCATGGGTAGACTTAGGCATACGGAGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** *
14148168 TCTAAGATCGGATCAGA-TCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGTGACCGGGC
66 TCTAAGATCGGACCAGACT-GAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGG-GACCGGGC
* ** * * * *
14148232 CGATCCCAGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACACCCATTTCATGGGT
129 CGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACGCCCGTTTCGTGGGT
* *
14148297 TGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGG
193 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGGGTTGTGGCAGCGG
* * * * * * *
14148362 GACGGGCAGCACGCAAAGGGGTACCAGGCCGATCCCCGACTTGCGTATTATGCCTCTTCGATCGA
257 GACAGGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGG
* * * * * *
14148427 CGCAGCACATGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGA
322 CTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* *
14148492 TCAGACTAGACTGAGGGTTGC
387 TCAGACTGGACCGAGGGTTGC
14148513 TGCTGTAGGA
Statistics
Matches: 1087, Mismatches: 170, Indels: 49
0.83 0.13 0.04
Matches are distributed among these distances:
859 2 0.00
860 205 0.19
861 167 0.15
862 168 0.15
863 52 0.05
864 65 0.06
865 1 0.00
867 4 0.00
870 26 0.02
872 2 0.00
874 1 0.00
875 2 0.00
876 2 0.00
877 4 0.00
879 2 0.00
881 1 0.00
882 12 0.01
883 370 0.34
884 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (858 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGACCGGGCCG
ATCCCGGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGGTTGTGGCAGCGGGACA
GGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCA
GCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACTGGACCGAGGGTTGCGGCAGCAAGATCGACAAAACACAAGAGGGACCAGGCTGAACCCCGGCA
TACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCAT
ACGGAGTTCATTCAATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGACCGAACCGAG
CATTACGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGAC
TTGCACATTCTACCTCTCCGACCGACTGAGCACCCACACGCTAGTTTATGGGTTGCCTTAGGCAT
ACAAAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAACAGGACCAGCATCGA
CAGCACGCAGAAGGGGACCAGGTCAATCCCTGGCTTATGTATGACGCATCTCCGGTCGACTGAAC
ACCCACACACTCG
Found at i:14148673 original size:26 final size:26
Alignment explanation
Indices: 14148623--14148675 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14148613 GTTGGTTTAG
* *
14148623 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
14148649 GCATACGGAGTTCAATCCCA-ATCTAA
1 GCATACGGAGTTC-ATCCCATATCTAA
14148675 G
1 G
14148676 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:14149384 original size:26 final size:26
Alignment explanation
Indices: 14149348--14149397 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14149338 GACTTAGGCG
14149348 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
14149374 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
14149398 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:14149732 original size:158 final size:157
Alignment explanation
Indices: 14149578--14149869 Score: 329
Period size: 157 Copynumber: 1.9 Consensus size: 157
14149568 TGAGGGTTGT
* * * * * **
14149578 GGCAGCGAGACCGGCAGCACGCAAAGGGGGACTGGGCCAATCCCTTGCTTGCGCATTATGCCTCT
1 GGCAGCAAGACCGACAGCACGC-AAGGGGGACCGAGACAATCCCCGGCTTGCGCA-TATGCCTCT
* * *
14149643 CCGGTCGGCTCAACGCCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATA-CAGAGTTTATTCC-
64 CCGGCCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATC-GAGTTCATTCCA
14149705 TAGTCTAAGATCGGATCAGACCAAGGGTTAC
128 T-GTCTAAGATCGGATCAGACCAAGGGTTAC
* * * ** * *
14149736 GGCAGTAAGATCGACAGCACGCAGGGGGGACCGAGATGATCCCCGGCTTGCGCATCTGCCTCTCT
1 GGCAGCAAGACCGACAGCACGCAAGGGGGACCGAGACAATCCCCGGCTTGCGCATATGCCTCTCC
* * * * *
14149801 GGCCTGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATATCGAGTTCATTCCATGT
66 GGCCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATCGAGTTCATTCCATGT
14149866 CTAA
131 CTAA
14149870 CCATACGGAG
Statistics
Matches: 109, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
156 29 0.27
157 60 0.55
158 20 0.18
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGCAGCAAGACCGACAGCACGCAAGGGGGACCGAGACAATCCCCGGCTTGCGCATATGCCTCTCC
GGCCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATCGAGTTCATTCCATGT
CTAAGATCGGATCAGACCAAGGGTTAC
Found at i:14150228 original size:171 final size:170
Alignment explanation
Indices: 14149909--14150230 Score: 394
Period size: 171 Copynumber: 1.9 Consensus size: 170
14149899 TAGATCAGAT
* * *
14149909 CAGACCGAGGGTTGCGGCAGCAGGACCAGCAATAGGATCGATAGCACGCAGGGGGGACCGGGTCG
1 CAGACAGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGATAGCACGCAGGGGGGACCGGGTCA
* * * * * ** * * *
14149974 ATCCCCGACTTGTGCATTCTGCCTCTCTGACTGGCTGAGCACCTGCATGCTCGTTTCGTGGGTTG
66 ATCCCCGACTTATGCATTATGCCTCTCCGACCGACTGAGCACCCACACGCTCGTTTCGAGGGTTA
* *
14150039 GCTTTGGCAAACGGAGTTCATTCCATGTCTAAGCCCCAGC
131 ACTTAGGCAAACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * *
14150079 CAGACAGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGGTAGTACGCAGAGGGGGACCGGG-C
1 CAGACAGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGATAGCACGCAG-GGGGGACCGGGTC
* **
14150143 TAATCCTCGACTTATGCATTATGCCTCTCCGACCGACTGAGTGCCCACACGCTCGTTTCGAGGGT
65 -AATCCCCGACTTATGCATTATGCCTCTCCGACCGACTGAGCACCCACACGCTCGTTTCGAGGGT
* *
14150208 TAACTTAGGCATATGGAGTTCAT
129 TAACTTAGGCAAACGGAGTTCAT
14150231 CCCCAGTCTA
Statistics
Matches: 125, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
170 45 0.36
171 80 0.64
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.21
Consensus pattern (170 bp):
CAGACAGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGATAGCACGCAGGGGGGACCGGGTCA
ATCCCCGACTTATGCATTATGCCTCTCCGACCGACTGAGCACCCACACGCTCGTTTCGAGGGTTA
ACTTAGGCAAACGGAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:14150544 original size:184 final size:184
Alignment explanation
Indices: 14150223--14150575 Score: 449
Period size: 184 Copynumber: 1.9 Consensus size: 184
14150213 TAGGCATATG
* * **
14150223 GAGTTCATCCCCAGTCTAAGATCAGATCGGACTGAGGGATGCGCCAGTAGGATTGGTAGCACACA
1 GAGTTCATCCCCAGTCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGACAGCACACA
* * *
14150288 AAGGGGATCGGGCCAATCCCTGGCTTGCACATTCTACCTCTCCGCCCGGCTGAGCGCATGTACGC
66 AAGGGGATCGAGCCAATCCCTGGCTTGCACATTCTACCTCTCCGCCCGGCTGAGCGCACGCACGC
* *
14150353 TCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTGTAAGAATACA
131 CCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTGTAAGAATACA
* * * ** **
14150407 GAGTTCATTCCTAGTCTAAGATCAGATCAGA-TCGAGGGTTGCGGTAGTAGGATCGACAGCACGT
1 GAGTTCATCCCCAGTCTAAGATCAGATCAGACT-GAGGGATGCGCCAGTAGGATCGACAGCACAC
* * * * * * * *
14150471 AAGGGGGATCGAGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGTGCACGCAC
65 AAAGGGGATCGAGCCAATCCCT-GGCTTGCACATTCTACCTCTCCGCCCGGCTGAGCGCACGCAC
*
14150535 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
129 GCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCC
14150576 ATGTCTAAGC
Statistics
Matches: 142, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
183 4 0.03
184 138 0.97
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GAGTTCATCCCCAGTCTAAGATCAGATCAGACTGAGGGATGCGCCAGTAGGATCGACAGCACACA
AAGGGGATCGAGCCAATCCCTGGCTTGCACATTCTACCTCTCCGCCCGGCTGAGCGCACGCACGC
CCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTGTAAGAATACA
Found at i:14150695 original size:159 final size:158
Alignment explanation
Indices: 14150432--14150902 Score: 484
Period size: 159 Copynumber: 3.0 Consensus size: 158
14150422 CTAAGATCAG
* * * * * * * *
14150432 ATCAGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGTA-AGGGGGATCGAGCCGATCCTCGGC
1 ATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGC
** * * * *
14150496 TTGCGCATTCTGCCTCTTCGGCCGGTTGAGTGCACGCACGCCCATTTCGTGGGTTGGCTTAGGCA
66 TTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
*
14150561 TAGGGAGTTCATTCCATGTCTAAGCCCC
131 TACGGAGTTCATTCCATGTCTAAGCCCC
* ** * **
14150589 ATCCAGACTGAGGGTTGTGGCAGTAGGA-CTGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCG
1 AT-CAGACCGAGGGTTGCAGCAGCAGGATC-GACAGCACGCAGAGGGGGACCGGGCCGATCCCCG
* * * * * *
14150653 GCTTGCGCATTATGCCTCTTCGATCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATG
64 GCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* ****
14150718 CATACAGAGTTCATTCCCA-GTCTAAGATTGG
129 CATACGGAGTTCATT-CCATGTCTAAG-CCCC
* *
14150749 ATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCATGCAG-GGCGGGTCCGGGCCGATCCCCGG
1 ATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGG-GGGACCGGGCCGATCCCCGG
* * * * * *
14150813 CTTGCGCATTCTGCCTCTTCGATTGGCTGAGCACCCGTATGCTCTTTTCGTGGGTTGGCTTAGAC
65 CTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* *
14150878 GTATGG-GTTCATTCCATGTCTAAGC
130 ATACGGAGTTCATTCCATGTCTAAGC
14150903 ATACGGAGTT
Statistics
Matches: 255, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.02
158 45 0.18
159 198 0.78
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
ATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGC
TTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCC
Found at i:14152344 original size:26 final size:26
Alignment explanation
Indices: 14152308--14152360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14152298 GTTGACTTAG
*
14152308 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
* *
14152334 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
14152360 G
1 G
14152361 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:14152642 original size:159 final size:153
Alignment explanation
Indices: 14152374--14152836 Score: 441
Period size: 159 Copynumber: 2.9 Consensus size: 153
14152364 GGACAGGACC
* *
14152374 GAGGGTTGCGAC-AGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCGGCTTACGCATT
1 GAGGGTTGCG-CTAGCAGGACCGACAGCACGCA-GGGGGACC-GGTCGATCCCGGCTTACGCATT
* * * *** * *
14152438 CTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAGGGAGTT
63 CTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTTTTTTCGTGGGTT-GCTTAGGCATACGGAGTT
14152503 CATTCCATGTCTAAGCCCCATCCGAA-T
127 CATTCCATGTCTAAGCCCCA-CCGAACT
* * *
14152530 CGAGGGTTGTGCTAGCGGGACCGACAGCACGCAGAAGGGGACCGGTCCGATCCCCGGCTTTCGCA
1 -GAGGGTTGCGCTAGCAGGACCGACAGCACGCAG--GGGGACCGGT-CGAT-CCCGGCTTACGCA
* *
14152595 TTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCTTTTTTCGTGGGTTGACTTAGGCATACGGAG
61 TTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTTTTTTCGTGGGTTG-CTTAGGCATACGGAG
**** * *
14152660 TTCATTCCCA-GTCTAAGATTGGACTGGACT
125 TTCATT-CCATGTCTAAG-CCCCACCGAACT
* * * * * *
14152690 GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGAACCGAGTCGGTAACCGACTTGCGCATT
1 GAGGGTTGCGCTAGCAGGACCGACAGCACGCAGGGGG-ACCG-GTCGAT-CCCGGCTTACGCATT
* * *
14152755 CTGCCTGTCC-AGCCGGCTGAGCGCCTGCACG-TTCATTTCCGTAGGTTGGCTTAGGCATACGGA
63 CTGCCTCTCCGA-CCGGCTGAGCGCCTGCACGCTT--TTTTCGTGGGTT-GCTTAGGCATACGGA
14152818 GTTCATTCCATGTCTAAGC
124 GTTCATTCCATGTCTAAGC
14152837 ATACGGAGTT
Statistics
Matches: 254, Mismatches: 36, Indels: 31
0.79 0.11 0.10
Matches are distributed among these distances:
156 2 0.01
157 36 0.14
158 60 0.24
159 150 0.59
160 6 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (153 bp):
GAGGGTTGCGCTAGCAGGACCGACAGCACGCAGGGGGACCGGTCGATCCCGGCTTACGCATTCTG
CCTCTCCGACCGGCTGAGCGCCTGCACGCTTTTTTCGTGGGTTGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCCACCGAACT
Found at i:14152845 original size:26 final size:26
Alignment explanation
Indices: 14152809--14152861 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14152799 GTTGGCTTAG
14152809 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14152835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14152861 G
1 G
14152862 TTCAGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14153177 original size:160 final size:159
Alignment explanation
Indices: 14152897--14153351 Score: 506
Period size: 160 Copynumber: 2.9 Consensus size: 159
14152887 AGCAGGACCA
* * * * * * *
14152897 GCAGCAGGATCGACAGCACGCAGGGGGTATCGGTCCGATCCCCGTCTTGTGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTTC
* * * * *
14152962 GGCCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 TGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
14153027 CTAAGCCCTAG--CTGAACCAAGGGTTGTG
131 CTAAGCACTAGACCAG-ACCAAGGGTTGCG
* * * *
14153055 GCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCCGAATCCCCGGCTTGCGCATTATGCCTTT
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCG-ATCCCCGACTTGCGCATTCTGCCTTT
* * * * *
14153120 TCTGCCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA
64 TCTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
* * *
14153185 -GTCTAAG-ATTGGACCAGACCGAGGGTTGCG
128 TGTCTAAGCACTAGACCAGACCAAGGGTTGCG
** * * * * *
14153215 ATAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCACTTTCTGCC-TCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTTC
* *
14153279 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCTTG
66 T-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
14153344 TCTAAGCA
130 TCTAAGCA
14153352 TACAGAGTTC
Statistics
Matches: 245, Mismatches: 44, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 6 0.02
158 98 0.40
159 27 0.11
160 109 0.44
161 5 0.02
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTTC
TGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCACTAGACCAGACCAAGGGTTGCG
Found at i:14153339 original size:514 final size:507
Alignment explanation
Indices: 14152245--14153534 Score: 1681
Period size: 514 Copynumber: 2.6 Consensus size: 507
14152235 CGATCCCCAG
* * * * * *
14152245 CTTGCACATCCAGCCTCTCTGGTCGGCTGAGCGCCCGCAGGCTCGTTTTGTGGGTTGACTTAGGC
1 CTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
14152310 ATACGGAGTTCATCCCCA-GTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACC
66 ATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GACAGGACC
* *
14152374 GAGGG-T---T-GC-G--ACAGCAGGATCGGCAGCACGCAGGGGGGACCGGGTCGAT-CCCGGCT
129 GAGGGTTGCGTAGCAGACACAGCAGGATCGACAGCACGCA-GGGGGACCGGGTCGATCCCCGTCT
** * *
14152430 TACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCAT
193 TGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
* * *
14152495 AGGGAGTTCATTCCATGTCTAAGCCCCATCCGAATCGAGGGTTGTGCTAGCGGGACCGACAGCAC
258 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGCTAGCGGGACCGACAGCAC
* * * * *
14152560 GCAGAAGGGGACCGGTCCGATCCCCGGCTTTCGCATTATGCCTCTCCGACCGGCTCAGCGCCTGC
323 GCAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGC
** ** *
14152625 ACGCTTTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACT
388 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
*
14152690 GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGAACCGAGTCGGTAACCGA
453 GAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGAACCGAGTCGGTAACCGA
* * ** * * * *
14152745 CTTGCGCATTCTGCCTGTCCAGCCGGCTGAGCGCCTGCACGTTCATTTCCGTAGGTTGGCTTAGG
1 CTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-CGTGGGTTGGCTTAGG
* *
14152810 CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGTTCAGACAGGACC
65 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GACAGGACC
* *
14152875 AAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGTATC-GGTCCGATCCC
129 GAGGGTTGC-GTAGCA-GA-CA-CAGCAGGATCGACAGCACGCAGGGGG-ACCGGGT-CGATCCC
*
14152939 CGTCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTA
188 CGTCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTA
* * * *
14153004 GGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGAACCAAGGGTTGTGGC-AGCGGGATCGG
253 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGT-GCTAGCGGGACCGA
* * *
14153068 CAGCACGCAGAGGGGGACCGGGCCGAATCCCCGGCTTGCGCATTATGCCTTTTCTG-CCAGCTCA
317 CAGCACGCAGAAGGGGACCGGGCCG-ATCCCCGGCTTGCGCATTATGCC-TCTCCGACCAGCTCA
*
14153132 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATTGG
380 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * **
14153197 ACCAGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGA
445 ACCAGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGAACCGAGTCGGTAACCGA
* *
14153260 CTTGCACTTTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGT
1 CTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * *
14153325 ATACGGAGTTCATTCCTTGTCTAAGCATACAGAGTTCATTCCCACTATAAGATCGAACCA-GACC
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG-A-CAGGACC
* *
14153389 GAGGCTTGCGACAGCAAGAC-CAGCA-G--C-ACA-CA-G--GGGGGACCGGGTCGATCCCCGTC
129 GAGGGTTGCG-TAGC-AGACACAGCAGGATCGACAGCACGCAGGGGGACCGGGTCGATCCCCGTC
* * *
14153445 TTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCA
192 TTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
*
14153510 TAGGCAGTTCATTCCATGTCTAAGC
257 TAGGGAGTTCATTCCATGTCTAAGC
14153535 ATATGGAGTT
Statistics
Matches: 687, Mismatches: 78, Indels: 48
0.85 0.10 0.06
Matches are distributed among these distances:
500 40 0.06
501 73 0.11
502 99 0.14
503 8 0.01
505 1 0.00
506 3 0.00
507 5 0.01
508 1 0.00
509 1 0.00
510 1 0.00
511 5 0.01
512 9 0.01
513 29 0.04
514 219 0.32
515 189 0.28
516 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (507 bp):
CTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGACAGGACCGA
GGGTTGCGTAGCAGACACAGCAGGATCGACAGCACGCAGGGGGACCGGGTCGATCCCCGTCTTGT
GCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGCTAGCGGGACCGACAGCACGCA
GAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAG
GGTTGCGATAGCAGGATCGACAGCACGCAGGGGGAACCGAGTCGGTAACCGA
Found at i:14153481 original size:184 final size:184
Alignment explanation
Indices: 14153165--14153561 Score: 548
Period size: 184 Copynumber: 2.2 Consensus size: 184
14153155 GTTGACTTAT
* * * * * *
14153165 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGACAGCAAGACCGACA
* * * *
14153230 GCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCACTTTCTGCCTCTCTGGCCGGCTGAGCGCC
66 GCACACAGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCTGACCGGCTGAGCGCC
* * * *
14153295 CGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGG-AGTTCATTCCTTGTCTAA
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGCAGTTCATTCCATGTCTAA
* * *
14153349 GCATACAGAGTTCATTCCCACTATAAGATCGAACCAGACCGAGGCTTGCGACAGCAAGACC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGACAGCAAGACCGA-C
* **
14153413 AGCACACAGGGGGGACCGGGTCGATCCCCGTCTTGTGCATTCTGCCTCT-TCGACCGGCTGAGCG
65 AGCACACAGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCT-GACCGGCTGAGCG
*
14153477 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAA
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAA
*
14153533 GCATATGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
14153562 TTTGAGCCAC
Statistics
Matches: 185, Mismatches: 25, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
183 4 0.02
184 181 0.98
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGACAGCAAGACCGACA
GCACACAGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCTGACCGGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAA
Found at i:14153537 original size:26 final size:26
Alignment explanation
Indices: 14153507--14153559 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14153497 GTTGGCTTAG
14153507 GCATA-GGCAGTTCATT-CCATGTCTAA
1 GCATATGG-AGTTCATTCCCA-GTCTAA
14153533 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14153559 G
1 G
14153560 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:14154271 original size:26 final size:26
Alignment explanation
Indices: 14154240--14154292 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14154230 GCTGACTTAG
14154240 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
14154266 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14154292 G
1 G
14154293 ATCAAACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14156179 original size:26 final size:26
Alignment explanation
Indices: 14156142--14156194 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14156132 GTTGACTTAG
14156142 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14156168 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
14156194 G
1 G
14156195 ATCAGACTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14157358 original size:316 final size:325
Alignment explanation
Indices: 14156800--14157497 Score: 833
Period size: 316 Copynumber: 2.2 Consensus size: 325
14156790 GAGTGCTCGT
* *
14156800 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACC
14156865 GAGGGTTATGGCAGCAGGACCAACAACGGGATCGACAGCACGTAGAGAGGGATCGGGCTGATCCT
66 GAGGGTTATGGCAGCAGG--CAAC-ACGGGA-CGACAGCACGTAGAGAGGGATCGGGCTGATCCT
* * *
14156930 CGGCTTGTGCATTATGACTCTCCAGCCGGCTGAGCGCCCACACGCTCGTTTCGAGGGTTGACATA
127 CGGCTTGCGCATTATGACTCTCCAGCCGGCTCAGCGCCCACACGCTCATTTCGAGGGTTGACATA
* * * **
14156995 GGCACACGGAGTTCATCCCCACTCTAAGATCGGACCGGACTGAGGGTTGCGACAGTAGGATCGGT
192 GGCACACGGAATTCATCCCCACTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * *
14157060 AGCACGCA-GGGGGACCAAGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGGCCGGCTAAGCAC
257 AGCACGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTAAGCAC
*
14157124 CTGC
322 CCGC
* * * * *
14157128 ATGCCCGTTTTGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-AGCTGGAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATC-GGAC
* * * *
14157192 CGGGGGTTGTGGCAGC-GG-GAC-C-GG-C-A-A-CACGTAGAGAGGGATCGAG-TCGATCCTCG
65 CGAGGGTTATGGCAGCAGGCAACACGGGACGACAGCACGTAGAGAGGGATCGGGCT-GATCCTCG
* * * * * * * * * * *
14157248 GCTTGCGCATTATGCCTCTTCGGTCGGTTCAGCGCGCGCACGCTCATTTTGTGGGTTGACTTATG
129 GCTTGCGCATTATGACTCTCCAGCCGGCTCAGCGCCCACACGCTCATTTCGAGGGTTGACATAGG
* * * **
14157313 CATACGGAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
194 CACACGGAATTCATCCCCACTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
*** * * * *
14157378 CACGCAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCC
259 CACGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTAAGCACCC
14157443 GC
324 GC
*
14157445 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14157498 ATACAGAGTT
Statistics
Matches: 315, Mismatches: 52, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
315 1 0.00
316 138 0.44
317 97 0.31
318 1 0.00
319 1 0.00
321 2 0.01
322 1 0.00
324 2 0.01
327 4 0.01
328 68 0.22
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (325 bp):
ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACC
GAGGGTTATGGCAGCAGGCAACACGGGACGACAGCACGTAGAGAGGGATCGGGCTGATCCTCGGC
TTGCGCATTATGACTCTCCAGCCGGCTCAGCGCCCACACGCTCATTTCGAGGGTTGACATAGGCA
CACGGAATTCATCCCCACTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCA
CGCAGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTAAGCACCCGC
Found at i:14157506 original size:26 final size:26
Alignment explanation
Indices: 14157470--14157548 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
14157460 GTTGGCTTAG
14157470 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
14157496 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14157522 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14157548 G
1 G
14157549 ATCAGACCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14157807 original size:171 final size:171
Alignment explanation
Indices: 14157561--14157878 Score: 485
Period size: 171 Copynumber: 1.9 Consensus size: 171
14157551 CAGACCAAAT
14157561 CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAGGGGGGACGGGGCCGATCC
1 CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAGGGGGGACGGGGCCGATCC
* * * *
14157626 CCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTT
66 CCGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
14157691 AGGCATACGGAGTTCATTCCATGTTTAAGCCCTAGTCGGAC
131 AGGCATACGGAGTTCATTCCATGTTTAAGCCCTAGTCGGAC
* *** * * * *
14157732 CGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGGCAGCACG-TAGAGGGGGACTGGGTCGATC
1 CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAG-GGGGGACGGGGCCGATC
* * *
14157796 CCCGGCTTGCGCATTCTACCTCTTCGGTCGGGTGAGTGCCCGCACGCTCGTTTCATGGGTTGACT
65 CCCGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
14157861 TAGGCATACGGAGTTCAT
130 TAGGCATACGGAGTTCAT
14157879 CCCTGGTCTA
Statistics
Matches: 131, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
170 2 0.02
171 129 0.98
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (171 bp):
CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAGGGGGGACGGGGCCGATCC
CCGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCATGTTTAAGCCCTAGTCGGAC
Found at i:14157913 original size:26 final size:26
Alignment explanation
Indices: 14157864--14157914 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14157854 GTTGACTTAG
* *
14157864 GCATACGGAGTTCATCCCTGGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
14157890 GCATACAGAGTTCATTCCC-AGTCTA
1 GCATACAGAGTTCA-TCCCTAGTCTA
14157915 GGATCGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:14157926 original size:171 final size:170
Alignment explanation
Indices: 14157522--14158076 Score: 445
Period size: 171 Copynumber: 3.2 Consensus size: 170
14157512 CCATGTCTAA
* * * * * * ***
14157522 GCATACGGAGTTCATTCCATGTCTAAGATCAGA-CCAAATCGAGGGTTGCGGCAGCAGGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAG-CCAGAGTCAGACCCA-GGTTGAGGCAGCAGGACCGGT
* *
14157586 AGCAGGATCGGCAGCACGCAAGGGGGGACGGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCG
64 AGCGGGATCGGCAGCACGCAAGGGGGGACGGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCG
* * *
14157651 GCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* ** * * *
14157693 GCATACGGAGTTCATTCCATGTTTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCAGAGTCAGACCCA-GGTTGAGGCAGCAGGACCGGTA
* * *
14157758 GCGGGATCGGCAGCACG-TAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCG
65 GCGGGATCGGCAGCACGCAAG-GGGGGACGGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCG
* * *
14157822 GTCGGGTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAG
129 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* **
14157864 GCATACGGAGTTCA-TCCCTGGTCTAAGCATACAGAGTTCATTCCCA-GTCTAGGATCGGACCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGC---CAGAG-TCAGACCCAGGT-T--GA--GG--C--
* ** * * * * * *
14157927 ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGC-AGGGGGGACCGGGCCGATCTCTGACTTGCG
52 AGC-A-GG-ACCGGTAGCGGGATCGGCAGCACGCAAGGGGGGACGGGGCCGATCCCCGGCTTGCG
* * * * * * * * *
14157991 TATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
114 CATTCTACCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
14158048 GCATAGGGAGTTCATTGCATGTCTAAGCC
1 GCATACGGAGTTCATTCCATGTCTAAGCC
14158077 CCAGCCGGAC
Statistics
Matches: 309, Mismatches: 54, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
170 8 0.03
171 163 0.53
173 2 0.01
174 4 0.01
175 5 0.02
176 1 0.00
178 2 0.01
180 1 0.00
181 1 0.00
182 2 0.01
183 1 0.00
184 94 0.30
185 25 0.08
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCAGAGTCAGACCCAGGTTGAGGCAGCAGGACCGGTAG
CGGGATCGGCAGCACGCAAGGGGGGACGGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGGC
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:14158288 original size:159 final size:156
Alignment explanation
Indices: 14157890--14158288 Score: 367
Period size: 159 Copynumber: 2.5 Consensus size: 156
14157880 CCTGGTCTAA
* * *
14157890 GCATACAGAGTTCATTCCCAGTCTAGGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * *
14157955 GCACGCAGGGGGGACCGGGCCGATCTCTGACTTGCGTATTCTGCCTCTCCGACCGGTTGAGTGCC
64 GCATGCAGGGGGGACTGAGCCAATCTCTGACTTGCGCATTATGCCTCTCAGACCGGCTCAGTGCC
* * *
14158020 CGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCCCATTTCGTGGGTAGACTTAG
* * * ** * * *
14158048 GCATAGGGAGTTCATT-GCATGTCTAAG-CCCCAGCCGGACTGAGGGTTTTGGCAGCGGGACCGA
1 GCATA-CGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGAC-GAGGGTTGTGGCAGCAGGATCGA
* * *
14158111 CAGCACT-CAGAGGTGGACTGAGCCAATC-CTCGGCTTGCGCATTATGCTTCTTCAG-CCGGCTC
62 CAGCA-TGCAG-GGGGGACTGAGCCAATCTCT-GACTTGCGCATTATGCCTC-TCAGACCGGCTC
* *
14158173 AGTGCCCGCACGCTCATTTCGTGGGTAGACTTAT
123 AGTGCCCGCACGCCCATTTCGTGGGTAGACTTAG
* * *
14158207 GCATACGCAGTTCATTCCCAGTCTAAGATCGGACCGAAGCAAGGGTTGTGGCAGCAGGATCGACG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCAGGATCGACA
14158272 GCATGCATGGGGGGACT
64 GCATGCA-GGGGGGACT
14158289 AGGTCGATCC
Statistics
Matches: 187, Mismatches: 40, Indels: 27
0.74 0.16 0.11
Matches are distributed among these distances:
157 5 0.03
158 55 0.29
159 118 0.63
160 9 0.05
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (156 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTTGTGGCAGCAGGATCGACAGC
ATGCAGGGGGGACTGAGCCAATCTCTGACTTGCGCATTATGCCTCTCAGACCGGCTCAGTGCCCG
CACGCCCATTTCGTGGGTAGACTTAG
Found at i:14159119 original size:26 final size:26
Alignment explanation
Indices: 14159089--14159141 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14159079 GTTGACTTAG
*
14159089 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14159115 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14159141 G
1 G
14159142 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14159425 original size:159 final size:165
Alignment explanation
Indices: 14159235--14159629 Score: 403
Period size: 171 Copynumber: 2.4 Consensus size: 165
14159225 TCTTCAGCCC
* * * * * *
14159235 GCTGAGCGACCGCACGC-CTGTTTCATTGGTTGGCTTAGCCATAGGGAGTTCATTCCACATCTAA
1 GCTGAGCGGCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAA
* * * * * ** *
14159299 TCGCTAGCCAGACC-GA-TGGT-TC-TG-G-CAGTGGGATCGACAGCACGCAGAGGGGGATTGGG
65 GCCCCAGCCAGACCAGAGTGGTAGCAGGCGACAGTGGGATCGACAGCACGCAGAGGGGGACCGGA
*
14159358 CCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCG
130 CCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCG
* **
14159394 GCTGAGCGGCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAAG
* * * *
14159459 CCCCAGTCGGACCGAGAGTTGTGGTAGCAGGACCGACAGTGGGATTGACTGCACGCAGAGGGGGA
66 CCCCAGCCAGACC-AGA---GTGGTAGCAGG--CGACAGTGGGATCGACAGCACGCAGAGGGGGA
**
14159524 CCGGATTGATCCTCGGCTTGCACATTATGCCTCTCCGGTCG
125 CCGGACCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCG
* * * *
14159565 GTTGAG-AGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAA
1 GCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACA-TCTAA
14159628 GC
65 GC
14159630 ATACGGAGTT
Statistics
Matches: 191, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
159 62 0.32
160 1 0.01
161 2 0.01
165 4 0.02
166 1 0.01
167 1 0.01
169 3 0.02
170 50 0.26
171 67 0.35
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (165 bp):
GCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAAG
CCCCAGCCAGACCAGAGTGGTAGCAGGCGACAGTGGGATCGACAGCACGCAGAGGGGGACCGGAC
CGATCCTCGGCTTGCACATTATGCCTCTCCGGTCG
Found at i:14159638 original size:26 final size:26
Alignment explanation
Indices: 14159602--14159654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14159592 GTTGACTTAG
14159602 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14159628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14159654 G
1 G
14159655 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14159991 original size:159 final size:157
Alignment explanation
Indices: 14159628--14159979 Score: 364
Period size: 159 Copynumber: 2.2 Consensus size: 157
14159618 CCCAGTCTAA
* * *
14159628 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAACAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAACAGGACCGGCA
* * * * *** * *
14159693 GCACGCAAGGGGGATCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTTCGGTTGGCTGAGCGCC
65 GCACGCAAGGGGGACCGAGCCAATCCCCGACTTACACATTATGCCTCTTCGGCCAGCTCAACGCC
**
14159758 CGCACGCCCGTTTCATAGCCTGGCTTAG
130 CGCACGCCCGTTTCATAGCCTAACTTAG
* ** * * *
14159786 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGATTGAGGGTTGTGGCAACGGGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAACAGGACCGGC
* * * * *
14159850 AGCACGCAGAGGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTTCGGCCAGCTCAACG
64 AGCACGCA-AGGGGGACCGAGCCAATCCCCGACTTACACATTATGCCTCTTCGGCCAGCTCAACG
* * * * ** *
14159915 CCCGGACGCTCGTTTCGTGGGTTAACTTAT
128 CCCGCACGCCCGTTTCATAGCCTAACTTAG
14159945 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACC
14159980 ATACTAAGGG
Statistics
Matches: 154, Mismatches: 35, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 58 0.38
159 92 0.60
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAACAGGACCGGCAG
CACGCAAGGGGGACCGAGCCAATCCCCGACTTACACATTATGCCTCTTCGGCCAGCTCAACGCCC
GCACGCCCGTTTCATAGCCTAACTTAG
Found at i:14160135 original size:26 final size:26
Alignment explanation
Indices: 14160104--14160156 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14160094 GTTGGCCTAG
14160104 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
14160130 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14160156 G
1 G
14160157 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14160858 original size:26 final size:26
Alignment explanation
Indices: 14160828--14160880 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14160818 GTTGACTTAG
*
14160828 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14160854 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14160880 G
1 G
14160881 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14161157 original size:159 final size:158
Alignment explanation
Indices: 14160862--14161283 Score: 395
Period size: 159 Copynumber: 2.7 Consensus size: 158
14160852 AAGCATATGA
* ** * * * * * *
14160862 AGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCA
1 AGTTCATTTCCAGTCTAAGCCCCAG-CCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGCACACA
* * * * * *
14160926 GGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGC
65 GAGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCACACGC
* **
14160991 CCGTTTCGTGGGTTGGCTTAGGCATAGGG
130 CCGTTTCGTGGGTTGACTTAGGCATACAG
*
14161020 AGTTCA-TTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGACCAGCAGCACACA
1 AGTTCATTTCCA-GTCTAAGCCCCAGCCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGCACACA
* * * * *
14161084 GAAGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGA-CTGGCTCAGCGCCCACAC
65 G-AGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATC-GGCTCAGCGCCCACAC
* *
14161148 GCTCGTTTCGTGGGTTGACTTATGCATACAG
128 GCCCGTTTCGTGGGTTGACTTAGGCATACAG
** * * * * * **
14161179 AGTTCATTTCCAGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAACAGGATC-GACAGCACGT
1 AGTTCATTTCCAGTCTAAGCCCCAG-CCGGACTGAGGGTTGCGGCAGCAGGACCAG-CAGCACAC
* * * * *
14161242 AGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCT
64 AGAGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCT
14161284 ACGACCTGCT
Statistics
Matches: 216, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.02
158 86 0.40
159 121 0.56
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
AGTTCATTTCCAGTCTAAGCCCCAGCCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGCACACAG
AGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCACACGCC
CGTTTCGTGGGTTGACTTAGGCATACAG
Found at i:14162198 original size:158 final size:159
Alignment explanation
Indices: 14161872--14162218 Score: 367
Period size: 158 Copynumber: 2.2 Consensus size: 159
14161862 ATCCCCAGTC
** * * * *
14161872 TAAGCATACCAAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGAGTTACGACAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGACAGCAGGATCG
* * * * * *
14161937 ACAGCACGCAGGGGAGGATCGGGCTGATCCCCGACTTGTGCATTATGCTTCTTCGACTGGCTCAG
66 ACAGCACGCAGAGGAGGATAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAG
** * *
14162002 TGCCCGCATGCTCATTTCGTGGGTTGACT
131 CACCCACACGCTCATTTCGTGGGTTGACT
* * * ** *
14162031 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGACAGCAGGATCG
* * * * * * *
14162096 ATAGCACGTAGAGG-GGACTAGGTC-GGTCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGA
66 ACAGCACGCAGAGGAGGA-TAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCA
* *
14162159 GCACCCACACGCTCATTTTGTGGGTTGCCT
130 GCACCCACACGCTCATTTCGTGGGTTGACT
*
14162189 TAAGCATACGGGGTTCATT-CCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG
14162219 CATACGGAGT
Statistics
Matches: 153, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.02
158 82 0.54
159 68 0.44
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGACAGCAGGATCG
ACAGCACGCAGAGGAGGATAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAG
CACCCACACGCTCATTTCGTGGGTTGACT
Found at i:14162225 original size:26 final size:26
Alignment explanation
Indices: 14162189--14162244 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14162179 TGGGTTGCCT
*
14162189 TAAGCATACGGGGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
14162215 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
14162241 TAAG
1 TAAG
14162245 ATCAGATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:14163140 original size:196 final size:196
Alignment explanation
Indices: 14162769--14163152 Score: 475
Period size: 196 Copynumber: 2.0 Consensus size: 196
14162759 GGGTTGCAGC
** * * * ** * *
14162769 AGCAGGATCGACAGAACGTAGGGGGGACTGGGTCGGTCCCCGGTTTACGCATTTTGCCTCTTCGA
1 AGCAGGATCGACAGAACACAGGAGGGACTAGGTCGATCCCCGACTTACGCATTCTGACTCTTCGA
* * * **
14162834 TCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCT
66 TCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
* * * *
14162899 AAGCATACGGAGTTCATTCCCAATCTTAGATTGGATCGGATCGAGGGTTGCGATAGTAGGTCCAG
131 AAGCATACGGAGTTCATTCCCAACCTAAGATTCGATCGAATCGAGGGTTGCGATAGTAGGTCCAG
14162964 T
196 T
** *
14162965 AGCAGGATCGACAGCTCACAGGAGGGACTAGGTCGATCCCCGACTTACGCATTCTGACTCTTCGG
1 AGCAGGATCGACAGAACACAGGAGGGACTAGGTCGATCCCCGACTTACGCATTCTGACTCTTCGA
* * *
14163030 TCGGCTAAGCGCCCGTACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTTATCCCCA-GTC
66 TCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTC
* * * * *
14163094 TAAGCATATGGAGTTCATTCCTAGCCTAAGA-TCGATTCTAATCGAGGGTTGCGGTAGTA
130 TAAGCATACGGAGTTCATTCCCAACCTAAGATTCGA-TCGAATCGAGGGTTGCGATAGTA
14163153 AGATCGACAG
Statistics
Matches: 157, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
195 3 0.02
196 152 0.97
197 2 0.01
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.27
Consensus pattern (196 bp):
AGCAGGATCGACAGAACACAGGAGGGACTAGGTCGATCCCCGACTTACGCATTCTGACTCTTCGA
TCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
AAGCATACGGAGTTCATTCCCAACCTAAGATTCGATCGAATCGAGGGTTGCGATAGTAGGTCCAG
T
Found at i:14163614 original size:26 final size:26
Alignment explanation
Indices: 14163585--14163637 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14163575 GTTAACATAG
*
14163585 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14163611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14163637 G
1 G
14163638 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14164003 original size:26 final size:26
Alignment explanation
Indices: 14163967--14164017 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14163957 TTGACTTGGG
*
14163967 CATACAGAGTTCATCCCCAGTCTAAT
1 CATACAGAGTTAATCCCCAGTCTAAT
* *
14163993 CATACGGAGTTAATTCCCAGTCTAA
1 CATACAGAGTTAATCCCCAGTCTAA
14164018 GATTAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTAATCCCCAGTCTAAT
Found at i:14164070 original size:368 final size:364
Alignment explanation
Indices: 14163357--14164212 Score: 889
Period size: 368 Copynumber: 2.3 Consensus size: 364
14163347 CCGACTTACG
* * * *
14163357 CATTCTACCTCTTCGATCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGATCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * *
14163422 AGTTCATTCCATGTCTAAGCCCTAG-CTGGACTGAGGGTTGTGGCAGCAGGATCGACAACGGGAT
66 AGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCAGGACCGGCAACGGGAT
*
14163486 CAGCAGCACGCAGAAGAGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTG
130 CAGCAGCACGCAGAAGAGGATCGGGCTGATCCCTAGCTTACGCATTATGCCTCTCCGACCGGCTG
* * ** *
14163551 AGCGACCGCATGCTCGTTTCGTGGGTTAACATAGGCATATGGAGTTCATCCCTAGTCTAAGCATA
195 AGCGACCGCACGCTCATTTCGTGGGTTAACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* * * * *
14163616 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGTAGTAGG
260 CGGAGTTAATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCAGCAGCAGGATCGGTAGT--G
* **
14163681 ATCGACAGCATGCAGGGAGGGACCAGGCTGATCC-CTGGCTAGCA
323 A-CGACAGCAT-CAGGGAGGGACCAGGCCGATCCTC-AACTAGCA
* * * * * * * *
14163725 TATTCTGCCTCTCCGATTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACCTAGGCGTACAG
1 CATTCTGCCTCTCCGATCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
**
14163790 AGTTCATTCCATGTGC-AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGAT
66 AGTTCATTCCATGT-CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAACGGGAT
* * *
14163854 C-GACAGCACGCAGAGGGGGATCGGGCTGAT-CCTCAGCTTGCGCATTATGCCTCTCCGACCGGC
130 CAG-CAGCACGCAGAAGAGGATCGGGCTGATCCCT-AGCTTACGCATTATGCCTCTCCGACCGG-
* * * * * *
14163917 CTCTCTTGCCGGCTAAGTGCTGACACGCTCATTTCGTGGGTTGACTTGGGCATACAGAGTTCATC
192 ----C-TG--AGC---G-ACCG-CACGCTCATTTCGTGGGTTAACATAGGCATACAGAGTTCATC
* *
14163982 CCCAGTCTAATCATACGGAGTTAATTCCCAGTCTAAGATTAGACCGGA-TCGAAGGTTGCAGCAG
245 CCCAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACT-GAAGGTTGCAGCAG
* * *
14164046 CAGGATC-G-A-T-A-G-CA-CAT-A-GGAGGGATCAGGCCGATCCTCAACTTGCG
309 CAGGATCGGTAGTGACGACAGCATCAGGGAGGGACCAGGCCGATCCTCAACTAGCA
* ** * *
14164093 CATTCTGCCTCTCCGATCGACAAAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCGATCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * *
14164158 AGTTCATTCCACGTCTAAGCCCCAATCGGATCGAGGGTTCTGGCAGC-GAGACCGG
66 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAG-GACCGG
14164213 TAGTCACAGA
Statistics
Matches: 405, Mismatches: 62, Indels: 42
0.80 0.12 0.08
Matches are distributed among these distances:
367 6 0.01
368 280 0.69
369 4 0.01
371 3 0.01
372 2 0.00
373 2 0.00
374 2 0.00
375 1 0.00
376 2 0.00
378 1 0.00
379 2 0.00
380 4 0.01
381 96 0.24
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (364 bp):
CATTCTGCCTCTCCGATCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAACGGGATC
AGCAGCACGCAGAAGAGGATCGGGCTGATCCCTAGCTTACGCATTATGCCTCTCCGACCGGCTGA
GCGACCGCACGCTCATTTCGTGGGTTAACATAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
GGAGTTAATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCAGCAGCAGGATCGGTAGTGACG
ACAGCATCAGGGAGGGACCAGGCCGATCCTCAACTAGCA
Found at i:14164500 original size:157 final size:158
Alignment explanation
Indices: 14164298--14164640 Score: 413
Period size: 157 Copynumber: 2.2 Consensus size: 158
14164288 CATTTCATGA
* * **
14164298 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGGTAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGATTACGACAGT
* * * * * * * *
14164363 AGGATCGACAGCAAGCATGAGGGATTG-GGTCGGTCC-CTGGCTTGCGCATTTTGCCTCTCCGGT
66 AGGATCGACAGCAAGCAGGAGGGATCGAGCT-GATCCTC-GACTTACGCATTCTGCCTCTCCGAT
* * *
14164426 CAGCTGAGCGCCCGTA-TCTCGTTTAATGT
129 CAGCTGAGCACCCGTACACTCGTTTAATGG
* * *
14164455 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGATTGCTACAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGATTACGACAGT
* * * * * *
14164520 AGGATCGGCAGCACGTAGGGGGGATCGAGCTGATCCTCGACTTACGCATTCTGCCTCTTCGATCG
66 AGGATCGACAGCAAGCAGGAGGGATCGAGCTGATCCTCGACTTACGCATTCTGCCTCTCCGATCA
*
14164585 GCTGAGCACCCGTACACTCGTTTCATGG
131 GCTGAGCACCCGTACACTCGTTTAATGG
*
14164613 GTTGGCTTAGGCGTACGGAGTTCATTCC
1 GTTGGCTTAGGCATACGGAGTTCATTCC
14164641 ATGTTTAAGC
Statistics
Matches: 157, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
157 117 0.75
158 40 0.25
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (158 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGATTACGACAGT
AGGATCGACAGCAAGCAGGAGGGATCGAGCTGATCCTCGACTTACGCATTCTGCCTCTCCGATCA
GCTGAGCACCCGTACACTCGTTTAATGG
Found at i:14165139 original size:159 final size:159
Alignment explanation
Indices: 14164898--14165334 Score: 400
Period size: 159 Copynumber: 2.8 Consensus size: 159
14164888 GGATCGATAG
* * * * * * * * *
14164898 CACGCAGGG-GGGCTGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGAT-CGACTGAGCACC
1 CACGCAGGGAGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCT-CGGTCCGACTCAGCACC
* * * * * *
14164961 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCCCCAG-CCG
65 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCG
* * ** ** *
14165025 GACTGAGGGTTGTTGCAGTGGGACCGGCAG
130 GACCGAGGGTTGTGGCAGCAGGACCAACAA
* * **
14165055 CACGCAGAGGAGGACCGGGCCAATCCCTGGCTTGTGCATTATGCCTTTTCGGT-CGACTCAGTGC
1 CACGCAG-GGAGGACCGGGCCAATCCCTGGCTTGCGCATTATGCC-TCTCGGTCCGACTCAGCAC
* * * * * *
14165119 CTGCACGCTCGTTTTGTGGGTTGACTTATGCGTACAGAGTTCATTCCCA-GTCTAAG-ATCAGAC
64 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGAC
* *
14165182 CGGTCCGAGGGTTGTGGCAGCAGGATCAACAA
128 CGGACCGAGGGTTGTGGCAGCAGGACCAACAA
* * * * * * * *
14165214 CACGTAGGGGGGATCGGGCCAATCCGTGGCTTGCGTATTCTGCCTCTCTGTCCGACTGAGCACCT
1 CACGCAGGGAGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCGGTCCGACTCAGCACCT
* *
14165279 GCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14165335 TATGGAGGTC
Statistics
Matches: 219, Mismatches: 53, Indels: 14
0.77 0.19 0.05
Matches are distributed among these distances:
157 15 0.07
158 89 0.41
159 110 0.50
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CACGCAGGGAGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCGGTCCGACTCAGCACCT
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGG
ACCGAGGGTTGTGGCAGCAGGACCAACAA
Found at i:14165332 original size:841 final size:841
Alignment explanation
Indices: 14163726--14165332 Score: 1901
Period size: 841 Copynumber: 1.9 Consensus size: 841
14163716 TGGCTAGCAT
* ** *
14163726 ATTCTGCCTCTCCGATTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACCTAGGCGTACAGA
1 ATTCTGCCTCTCCGATCGGCTGAGCACCCGCACACTCATTTCATGGGTTGACCTAGGCGTACAGA
* *
14163791 GTTCATTCCATGTGCAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCG
66 GTTCATTCCATGTGCAAGCCCCAGTCGGACCGAGCGTTGTGGCAGCAGGACCGGCAGCGGGATCG
* * ***
14163856 ACAGCACGCAGAGGGGGATCGGGCTGATCCTCAGCTTGCGCATTATGCCTCTCCGACCGGCCTCT
131 ACAGCACGCAGAAGGGGACCAAACTGATCCTCAGCTTGCGCATTATGCCTCTCCGACCGGCCTCT
* * * * * *
14163921 CTTGCCGGCTAAGTGCTGACACGCTCATTTCGTGGGTTGACTTGGGCATACAGAGTTCATCCCCA
196 CTCGCCGACTAAGCGCCGACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA
* * * * * *
14163986 GTCTAATCATACGGAGTTAATTCCCAGTCTAAGATTAGACCGGATCGAAGGTTGCAGCAGCAGGA
261 GTCTAAGCATACGGAGTTAATTCCCAATCTAAGATCAAACCGGACCGAAGGTTACAGCAGCAGGA
* * * *
14164051 TCGATAGCACATAGGAGGGATCAGGCCGATCCTCAACTTGCGCATTCTGCCTCTCCGATCGACAA
326 TCGATAGCACACAGGAGGGATCAGGCCGATCCCCAACTTGCACATTCTACCTCTCCGATCGACAA
* *
14164116 AGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCC
391 AGAGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCC
* * * * * *
14164181 AATCGGATCGAGGGTTCTGGCAGCGAGACCGGTAGTCACAGAGGGGGACTGTGCCGATCCCCGAC
456 AACCGGATCGAGGGTTCTGGCAGCGAGACCGGCAGTCACAGAGGAGGACCGGGCCAATCCCCGAC
* * *
14164246 TTGCACATTATCCCTCTCCTGTCGGCTCAGCGTCTGAACGCTCATTTCATGAGTTGACTTAGGCA
521 TTGCACATTATCCCTCTCCGGTCGACTCAGCGCCTGAACGCTCATTTCATGAGTTGACTTAGGCA
* * * * *
14164311 TACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGGTAGTAGGATCGACAGCA
586 TACAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCAACAACA
* * * ** * * *
14164376 AGCATGAGGGATTGGGTCGGTCCCTGGCTTGCGCATTTTGCCTCTCCGGTCAGCTGAGCGCCCGT
651 AGCAGGAGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCACCCGC
* * *
14164441 ATCTCGTTTAATGTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
716 AACTCATTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
14164506 AGGATTGCTACAGTAGGATCGGCAGCACGTAGGGGGGATCGAGCTGATCCTCGACTTACGC
781 AGGATTGCTACAGTAGGATCGGCAGCACGTAGGGGGGATCGAGCTGATCCTCGACTTACGC
* * * * * *
14164567 ATTCTGCCTCTTCGATCGGCTGAGCACCCGTACACTCGTTTCATGGGTTGGCTTAGGCGTACGGA
1 ATTCTGCCTCTCCGATCGGCTGAGCACCCGCACACTCATTTCATGGGTTGACCTAGGCGTACAGA
** * * *
14164632 GTTCATTCCATGTTTAAGCCCCAG-CTGGACCGAGCGTTGTGGCAGCAGGGCTGGTAGCGGGATC
66 GTTCATTCCATGTGCAAGCCCCAGTC-GGACCGAGCGTTGTGGCAGCAGGACCGGCAGCGGGATC
* * * *
14164696 GGCAGCACGCATAAGGGGACCAAACTGATCCT-TGACTTGCGCATTATGCCTCTCC-AGCCTGCC
130 GACAGCACGCAGAAGGGGACCAAACTGATCCTCAG-CTTGCGCATTATGCCTCTCCGA-CCGGCC
* * *
14164759 TCTC-CGACCGACTGAGCGCCCG-CACGCTCATTTCATGGGTTGACTTAGGTATACGGAGTTCAT
193 TCTCTCG-CCGACTAAGCG-CCGACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
* * * * *
14164822 CTCCAGTCTAAGCGTATGGAGTTCATTCCCAATCTAAGATCAAATCGGACCG-AGGTTAC-GACA
256 CCCCAGTCTAAGCATACGGAGTTAATTCCCAATCTAAGATCAAACCGGACCGAAGGTTACAG-CA
* * * * **
14164885 GCAGGATCGATAGCACGCAGGGGGGCT-GGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGAT
320 GCAGGATCGATAGCACACAGGAGGGATCAGGCCGATCCCCAACTTGCACATTCTACCTCTCCGAT
** **
14164949 CGACTGAGCA-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCT
385 CGACAAAG-AGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCT
* * * * *
14165013 AAGCCCCAGCCGGA-CTGAGGGTTGTTGCAGTGGGACCGGCAG-CACGCAGAGGAGGACCGGGCC
449 AAGCCCCAACCGGATC-GAGGGTTCTGGCAGCGAGACCGGCAGTCA--CAGAGGAGGACCGGGCC
* * ** * * * * * * ** *
14165076 AATCCCTGGCTTGTGCATTATGCCTTTTCGGTCGACTCAGTGCCTGCACGCTCGTTTTGTGGGTT
511 AATCCCCGACTTGCACATTATCCCTCTCCGGTCGACTCAGCGCCTGAACGCTCATTTCATGAGTT
* * * * **
14165141 GACTTATGCGTACAGAGTTCATTCCCAGTCTAAGATCAGACC-GGTCCGAGGGTTGTGGCAGCAG
576 GACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGAT-CGAGGGTTACGGCAGCAG
* * * * * * *
14165205 GATCAACAACACGTAGGGGGGATCGGGCCAATCCGTGGCTTGCGTATTCTGCCTCT-CTGTCCGA
640 GATCAACAACAAGCAGGAGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCAG-
* **
14165269 CTGAGCACCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
704 CTGAGCACCCGCA-ACTCATTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
14165333 CATATGGAGG
Statistics
Matches: 631, Mismatches: 121, Indels: 28
0.81 0.16 0.04
Matches are distributed among these distances:
838 3 0.00
839 128 0.20
840 206 0.33
841 292 0.46
842 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (841 bp):
ATTCTGCCTCTCCGATCGGCTGAGCACCCGCACACTCATTTCATGGGTTGACCTAGGCGTACAGA
GTTCATTCCATGTGCAAGCCCCAGTCGGACCGAGCGTTGTGGCAGCAGGACCGGCAGCGGGATCG
ACAGCACGCAGAAGGGGACCAAACTGATCCTCAGCTTGCGCATTATGCCTCTCCGACCGGCCTCT
CTCGCCGACTAAGCGCCGACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA
GTCTAAGCATACGGAGTTAATTCCCAATCTAAGATCAAACCGGACCGAAGGTTACAGCAGCAGGA
TCGATAGCACACAGGAGGGATCAGGCCGATCCCCAACTTGCACATTCTACCTCTCCGATCGACAA
AGAGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCC
AACCGGATCGAGGGTTCTGGCAGCGAGACCGGCAGTCACAGAGGAGGACCGGGCCAATCCCCGAC
TTGCACATTATCCCTCTCCGGTCGACTCAGCGCCTGAACGCTCATTTCATGAGTTGACTTAGGCA
TACAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCAACAACA
AGCAGGAGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCACCCGC
AACTCATTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
AGGATTGCTACAGTAGGATCGGCAGCACGTAGGGGGGATCGAGCTGATCCTCGACTTACGC
Found at i:14165346 original size:26 final size:26
Alignment explanation
Indices: 14165306--14165358 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14165296 GTTGGCTTAG
*
14165306 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
*
14165332 GCATATGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
14165358 G
1 G
14165359 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:14165478 original size:184 final size:184
Alignment explanation
Indices: 14165159--14165516 Score: 477
Period size: 184 Copynumber: 1.9 Consensus size: 184
14165149 CGTACAGAGT
* ** * * *
14165159 TCATTCCCAGTCTAAGATCAGACCGGTCCGAGGGTTGTGGCAGCAGGATCAACAACACGTAGGGG
1 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGGCAGCAGGATCAACAACACGCAAGGA
* ** * * * *
14165224 GGATCGGGCCAATCCGTGGCTTGCGTATTCTGCCTCTCTGTCCGACTGAGCACCTGCACACTCAT
66 GGACCGGGCCAATCCGCAGCTTGCGCATTCTGCCTCTCGGTCCGACTGAGCACCCGCACACCCAT
14165289 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGG
131 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGG
* * * * * *
14165343 TCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTCCGGTAGCAGGATCGACAGCACGCAAGGA
1 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGGCAGCAGGATCAACAACACGCAAGGA
* *
14165408 GGACCGGGCCAATTCC-CAGCTTGCGCATTCTGCCTCTCCGGT-CGGCTGAGCACCCGCACGCCC
66 GGACCGGGCCAA-TCCGCAGCTTGCGCATTCTGCCTCT-CGGTCCGACTGAGCACCCGCACACCC
* *
14165471 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
129 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
14165517 GCCCAGTCGG
Statistics
Matches: 149, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 143 0.96
185 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTCCGGCAGCAGGATCAACAACACGCAAGGA
GGACCGGGCCAATCCGCAGCTTGCGCATTCTGCCTCTCGGTCCGACTGAGCACCCGCACACCCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGG
Found at i:14165640 original size:499 final size:498
Alignment explanation
Indices: 14164754--14166370 Score: 1411
Period size: 499 Copynumber: 3.2 Consensus size: 498
14164744 CCTCTCCAGC
* * * *
14164754 CTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGTATACGGAGTT
1 CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* *
14164819 CATCTCCA-GTCTAAGCGTATGGAGTTCATTCCCAATCTAAGATCAAATCGGACCGAGGTTACGA
66 CAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGTTACGA
* * * * * *
14164883 CAGCAGGATCGATAGCACGCAGGGGGGCTGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGA
130 CAGCAGGATCGACAGCACGCAGGAGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGA
*
14164948 TCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCT
195 TCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * **
14165013 AAGCCCCAGCCGGACTGAGGGTTGTTGCAGTGGGACCGGCAGCACGCAGAGGAGGACCGGGCCAA
260 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGAGGACCAAGCCAA
* * * * * * * **
14165078 TCCCTGGCTTGTGCATTATGCCTTTTCGGTCGACTCAGTGCCTGCACGCTCGTTTTGTGGGTTGA
325 TCCCCGGCTTGCGCATTATGCCTTTCCGATCGACTCAGCGCCTACACGCTCATTTCATGGGTTGA
* * * * *
14165143 CTTATGCGTACAGAGTTCATTCCCAGTCTAAGATCAGACCGGTCCGAGGGTTGTGGCAGCAGGAT
390 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGAT
* * ** * * *
14165208 CAACA-ACACGTAGGGGGGATCGGGCCAATCCGTGGCTTGCGTATT
455 CAACAGACAC--AGGGGGGACCGGACCAATCCCCGACTTACGCATT
* * * *
14165253 CTGCCTCTCTGTCCGACTGAGCACCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
1 CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* ** * *
14165318 CATTCCATGTCTAAGCATATGGAGGTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTCCG
66 CATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAATC-GGACCGA-GGTTACG
** * * *
14165382 GTAGCAGGATCGACAGCACGCAAGGAGGACCGGGCCAATTCCCAGCTTGCGCATTCTGCCTCTCC
129 ACAGCAGGATCGACAGCACGC-AGGAGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCC
* * *
14165447 GGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
193 GATCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * *
14165512 CTAAGGCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACTGACAGCACGCAGAGG-GGACCAAGCT
258 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGAGGACCAAGCC
* *
14165576 GATCCCCGGCTTGCG-ATTATGCCTTTCCGATCGGCTCAGCGCCTACACGCTCATTTCATGGGTT
323 AATCCCCGGCTTGCGCATTATGCCTTTCCGATCGACTCAGCGCCTACACGCTCATTTCATGGGTT
* * *
14165640 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAAG
388 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAG
* * *
14165705 ATCGACAGTACACAGGGGGGACCTGACCGATCCCCGACTTACGCATT
453 ATCAACAG-ACACAGGGGGGACCGGACCAATCCCCGACTTACGCATT
* * * * * *
14165752 CTACCT-TTTCGACCGGCTGAGTGCCCGTACGCTCGATTT-GTGGGTTGGCTTAGGCATGCGGAG
1 CTGCCTCTCT-GACCGACTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAG
* * * * * * *
14165815 TTCATTCCATGTCTAAGCATACGGAGTTCATTTCTAGTCTAAGATCAGACCGAATCGAAGGTTAC
64 TTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCG-AGGTTAC
* * * * * * *** * *
14165880 GGTAGCAAGGCCAGCAGTAGGATCGGCAGCATGTAGGGGGGGATCGAGTTGATCCCCGGCTTGCG
128 ----G--A---CAGC---AGGATCGACAGCACGCA--GGAGGACCGGGCCAATCCCCAGCTTGCA
* * ** * * ** * *
14165945 CATTCTGCCTCTCCTATCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATGA
179 CATTCTACCTCTCCGATCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
* * * * * * *
14166010 AGTTCATTCCATGTCTAAGCCCCAGCTGAACTGAGGTTTGTGCCAGTAGGACTGACAGCGGGATT
244 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAGC---A--
* * ** ** * * *
14166075 GGCGGCACGTAGAGGGCGATCGGGCTGATCCCCGACTTGCACATTATGGCTCTTCGGTCGGCGTC
304 --C-GCA-G-AG-GAG-GACCAAGCCAATCCCCGGCTTGCGCATTAT-GC-CTT---TC--CG-A
* * ** * *
14166140 TCCGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCC
354 T-CGA-C---TCAGCGCCTACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
** * * * **
14166205 AGTCTAAGATCAGACCAAACTGAGGGTTACGG-AGCAAGATCGATC-G-CACGTAGGGGGGATTG
414 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATC-AACAGACAC--AGGGGGGACCG
* ** * *
14166267 GGCTGATCCCCGAGTTGCGCATT
476 GACCAATCCCCGACTTACGCATT
* * * * *
14166290 CTGCCTCTCTGACCGGCTTAGCGCCCGCACG-TCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGT
1 CTGCCTCTCTGACCGACTGAGCGCCCGCACGCT-CATTTCGTGGGTTGGCTTAGGCATACGGAGT
14166354 TCATTCCATGTCTAAGC
65 TCATTCCATGTCTAAGC
14166371 CCCAGCCAGA
Statistics
Matches: 908, Mismatches: 153, Indels: 75
0.80 0.13 0.07
Matches are distributed among these distances:
498 7 0.01
499 326 0.36
500 49 0.05
501 148 0.16
503 1 0.00
508 3 0.00
510 1 0.00
511 13 0.01
512 128 0.14
515 1 0.00
519 1 0.00
520 3 0.00
521 1 0.00
522 2 0.00
523 1 0.00
524 1 0.00
525 19 0.02
526 5 0.01
527 2 0.00
528 3 0.00
531 2 0.00
533 2 0.00
534 1 0.00
535 2 0.00
536 4 0.00
537 4 0.00
538 100 0.11
539 78 0.09
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (498 bp):
CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGTTACGAC
AGCAGGATCGACAGCACGCAGGAGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGAT
CGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGAGGACCAAGCCAAT
CCCCGGCTTGCGCATTATGCCTTTCCGATCGACTCAGCGCCTACACGCTCATTTCATGGGTTGAC
TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATC
AACAGACACAGGGGGGACCGGACCAATCCCCGACTTACGCATT
Found at i:14165664 original size:157 final size:159
Alignment explanation
Indices: 14165389--14165831 Score: 443
Period size: 157 Copynumber: 2.8 Consensus size: 159
14165379 CCGGTAGCAG
* * * * * * * *
14165389 GATCGACAGCACGCA-AGGAGGACCGGGCCAATTCCCAGCTTGCGCATTCTGCCTCTCCGGTCGG
1 GATCGACAGCACACAGAGG-GGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTTTCCGATCGG
* * * *
14165453 CTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGG
65 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGG
* * **
14165518 CCCAG-TCGGACCGAGGGTTGTGGCAGTGG
130 ACCAGATCGGACCGAGGGTTGCGGCAGTAA
* * *
14165547 GA-CTGACAGCACGCAGAGGGGACCA-AGCTGATCCCCGGCTTGCG-ATTATGCCTTTCCGATCG
1 GATC-GACAGCACACAGAGGGGACCAGA-CCGATCCCCGGCTTGCGCATTCTGCCTTTCCGATCG
* ** * * *
14165609 GCTCAGCGCCTACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAA
64 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* *
14165673 -GATCGGATCGGACCGAGGGTTGCGGCAGTAA
128 GGACCAGATCGGACCGAGGGTTGCGGCAGTAA
* * * * * * * *
14165704 GATCGACAGTACACAGGGGGGACCTGACCGATCCCCGACTTACGCATTCTACCTTTTCGACCGGC
1 GATCGACAGCACACAGAGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTTTCCGATCGGC
* * *
14165769 TGAGTGCCCGTACGCTCGATTT-GTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAG
66 TGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
14165832 CATACGGAGT
Statistics
Matches: 229, Mismatches: 45, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 123 0.54
158 96 0.42
159 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GATCGACAGCACACAGAGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTTTCCGATCGGC
TGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGGA
CCAGATCGGACCGAGGGTTGCGGCAGTAA
Found at i:14166684 original size:158 final size:156
Alignment explanation
Indices: 14166138--14166686 Score: 510
Period size: 159 Copynumber: 3.5 Consensus size: 156
14166128 TCGGTCGGCG
* * *
14166138 TCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCC
1 TCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-T
* * * * * * *
14166203 CCAGTCTAAGATCAGACCAAACTGAGGG-T-TACGGAGCAAGATCGATCGCACGTAGGGGGGATT
65 CCAGTCTAAGATCAAACCAGACTGAGGGTTGTA-GCAGCAGGATCGATAGCATGTA-GGGGGACT
* *
14166266 GGGCTGATCCCCGAGTTGCGCATTCTGCC
128 GGGCTGATCCCCGACTTGCGCATTATGCC
* * ** * **
14166295 TCTCTGACCGGCTTAGCGCCCGCACG-TCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT
1 TCTCCGACCGGCTGAGCGCCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
** * * ** * * ** *
14166359 CCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGATCGGCAGCATGCAAAGGGGGAC
65 CCA-GTCTAAGATCAAACCAGACTGAGGGTTGTAGCAGCAGGATCGATAGCATG--TAGGGGGAC
* *
14166424 TGGACTGATCCCCAACTTGCGCATTATGCC
127 TGGGCTGATCCCCGACTTGCGCATTATGCC
* * * * * ** * * * * *
14166454 TCTTCGGCAGACTTAATGCCCGTATGCTTGTTTTATGGGTTGACTTATGCATACAGAGTTCATTC
1 TCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-
* *
14166519 CCAGTCTAAGATCAAATCAGACTGAGGGTTGTAGCAGCAGGATCGATAGCATGTAGGGTGGACCG
65 CCAGTCTAAGATCAAACCAGACTGAGGGTTGTAGCAGCAGGATCGATAGCATGTAGGG-GGACTG
* *
14166584 GGCTGATCCCCGACTTGTGCATTTTGCC
129 GGCTGATCCCCGACTTGCGCATTATGCC
* * * * *
14166612 TCTCCGACCGGCTGAGCGCCTGCACGCTCATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTC
1 TCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
14166677 CATGTCTAAG
66 CA-GTCTAAG
14166687 CATATGGAGT
Statistics
Matches: 301, Mismatches: 81, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
156 4 0.01
157 76 0.25
158 97 0.32
159 119 0.40
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (156 bp):
TCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
CAGTCTAAGATCAAACCAGACTGAGGGTTGTAGCAGCAGGATCGATAGCATGTAGGGGGACTGGG
CTGATCCCCGACTTGCGCATTATGCC
Found at i:14167268 original size:26 final size:26
Alignment explanation
Indices: 14167239--14167291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14167229 GTTGACTTAG
14167239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14167265 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14167291 G
1 G
14167292 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14167966 original size:26 final size:26
Alignment explanation
Indices: 14167936--14167988 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14167926 GTTGGCTTAG
14167936 GCATAC-GAAGCTCATT-CCATGTCTAA
1 GCATACAG-AGCTCATTCCCA-GTCTAA
*
14167962 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
14167988 G
1 G
14167989 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:14168200 original size:26 final size:26
Alignment explanation
Indices: 14168164--14168214 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14168154 TGACTTAGGG
14168164 ATACAGAGTTCA-TCCTCAGTCTAAGC
1 ATACAGAGTTCATTCC-CAGTCTAAGC
*
14168190 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
14168215 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:14168584 original size:159 final size:156
Alignment explanation
Indices: 14168188--14168681 Score: 503
Period size: 159 Copynumber: 3.1 Consensus size: 156
14168178 CTCAGTCTAA
*
14168188 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGTAG-AGGATCGACA
* * * ** * *
14168253 GCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTACCTCTCTGACCGGTTGAGCGCT
65 GCACGCAGGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTACCTCTCCGATAGGCTGAGCGCC
*
14168318 CGGACGC-CTGTTTCGTGGGTTGGCTTAG
129 CGAACGCTCT-TTTCGTGGGTTGGCTTAG
* * * * * * *
14168346 GCATAGGGAGTTCATT-CCATGTCTAAGACCCAG-TCGAACCGAGGGTTGTGGCTA-AGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGACCGGACCGAAGGTTGCGG-TAGA-GGATCG
** * * * *
14168408 GTAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATTCCTCTCCGATAGGCTCAG
62 ACAGCACGCAG-GGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTACCTCTCCGATAGGCTGAG
* * * *
14168473 CACCCGAATGCTCTTTTCATGGGTTGACTTAG
125 CGCCCGAACGCTCTTTTCGTGGGTTGGCTTAG
* * * *
14168505 GCTTACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACTGAAGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGTAG-AGGATCGACA
* * * * * *
14168570 GCATGCAGGTGGGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCGC
65 GCACGCAGG-GGGGACCGGGC-GATCCCCGGCTTGCGCATTCTACCTCTCCGATAGGCTGAGCGC
*
14168635 CCGCACGCTCATTTT-GTGGGTTGGCTTAG
128 CCGAACGCTC-TTTTCGTGGGTTGGCTTAG
14168664 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
14168682 ATATCTTAGC
Statistics
Matches: 268, Mismatches: 55, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 56 0.21
159 198 0.74
160 10 0.04
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGTAGAGGATCGACAG
CACGCAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGATAGGCTGAGCGCCCG
AACGCTCTTTTCGTGGGTTGGCTTAG
Found at i:14169074 original size:502 final size:500
Alignment explanation
Indices: 14168124--14169077 Score: 1166
Period size: 502 Copynumber: 1.9 Consensus size: 500
14168114 GGGGGGGCTA
* * ** *
14168124 GCTGAGCGCCCGTATGCTTGTTTTGTGGGTTGACTTAGGGATACAGAGTTCATCCTCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAAG
* * * **
14168189 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAAGGTTGCGACAGCAGGATCGACAG
* * * *
14168254 CACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTACCTCTCTGACCGGTTGAGCGCTC
131 CACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTACCTCTCCGACCGGCTGAGCGCCC
*
14168319 GGACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGAA
196 GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGAA
* * * * *
14168384 CCGAGGGTTGTGGCTAAGGGACCGGTAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGC
261 CCAAGGGTTGTGGCTAAGGGACCGGTAGCACACAGAAGGGGACCGGGTCGATCCCCGACCTACGC
* * ** * **
14168449 ATTATTCCTCTCCGATAGGCTCAGCACCCGAATGCTCTTTTCATGGGTTGACTTAGGCTTACGGA
326 ATTATGCCTCTCCGACAGGCTCAGCACCCGAACACTCTTATCATGGGTTGACTTAGGCACACGGA
* * * *
14168514 GTTCATTCCCAGCCTAAGATCAGACCGGACTGAAGGTTACGGTAGTAGGATCGACAGCATGCAGG
391 GTTCATTCCCAACCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGA--GACAGCATGCAGG
14168579 TGGGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTG
454 TGGGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTG
* * *
14168626 GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-A-TCTT
1 GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCA-TCC-TCAGTCTA
* * *
14168689 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAGGGTTGTGACAGCAGGATCAGT
64 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAAGGTTGCGACAGCAGGATC-GA
* * * * * * **
14168754 C-GCACGTAGGGGGGATCAGGCTGATCCTCGGCTTGTGTATTCTACCTCTCCGGTCGGCTGAGCG
128 CAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTACCTCTCCGACCGGCTGAGCG
*
14168818 CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
193 CCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTC
* * ** * *
14168883 GGACCAAGGGTTGTGGC-AGCGGGACCGGTAGCACGTAGAAGGGGACCGGGTTGATCCCTGACCT
258 GAACCAAGGGTTGTGGCTA-AGGGACCGGTAGCACACAGAAGGGGACCGGGTCGATCCCCGACCT
* * * * * ** * *
14168947 ACGTATTATGCCTCTTCGGCCGGCTTAG-TGCCGCACACTCATTATCGTGGGTTGAACTTAGGCA
322 ACGCATTATGCCTCTCCGACAGGCTCAGCACCCGAACACTC-TTATCATGGGTTG-ACTTAGGC-
* ** * *
14169011 ACACGGAGTTCATTCCGCAATCTAAGATTGGATCGGACCGAGGGTTACTGGCAGCA-G-GACAGC
384 ACACGGAGTTCATTCC-CAACCTAAGATCAGACCGGACCGAAGGTTAC-GGCAGCAGGAGACAGC
14169074 ATGC
447 ATGC
14169078 CAGGGGGACG
Statistics
Matches: 377, Mismatches: 66, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
501 8 0.02
502 310 0.82
503 14 0.04
504 15 0.04
505 25 0.07
506 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (500 bp):
GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAAGGTTGCGACAGCAGGATCGACAG
CACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGTATTCTACCTCTCCGACCGGCTGAGCGCCC
GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGAA
CCAAGGGTTGTGGCTAAGGGACCGGTAGCACACAGAAGGGGACCGGGTCGATCCCCGACCTACGC
ATTATGCCTCTCCGACAGGCTCAGCACCCGAACACTCTTATCATGGGTTGACTTAGGCACACGGA
GTTCATTCCCAACCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGAGACAGCATGCAGGTG
GGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTG
Found at i:14169158 original size:26 final size:26
Alignment explanation
Indices: 14169128--14169180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14169118 GTAAACTTAG
*
14169128 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
*
14169154 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
14169180 G
1 G
14169181 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:14169549 original size:463 final size:463
Alignment explanation
Indices: 14168659--14169508 Score: 1063
Period size: 463 Copynumber: 1.8 Consensus size: 463
14168649 TGTGGGTTGG
* * * *
14168659 CTTAGGCATACGGAGTTCATTCCATATCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
1 CTTAGGCATACGGAGTTCATCCCATATCTAAGCATACGGAGGTCATTCCCAGTCTAAGATCAAAC
** * * *
14168724 CGAAACGAGGGTTGTGACAGCAGGATCAGTCGCACGTAGGGGGGATCAGGCTGATCCTCGGCTTG
66 CGAAACGAGGGTTACGACAGCAAGATCAGACGCACGTAGGGGGGATCAGGCTGATCCCCGGCTTG
* * ** * * ** *
14168789 TGTATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAG
131 CGCATTCTACCTCTCCGACCAGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
* * *
14168854 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACCGGTAGCACGT
196 GGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACCAGTAGCACGT
* ** ** * * *
14168919 AGAAGGGGACCGGGTTGATCCCTGACCTACGTATTATGCCTCTTCGGCCGGCTTAGTGCCGCACA
261 AGAAGGGGACCGAGCCGATCCCTGACCTACACATTATGCCTCTCCGGCCGGCTCAGCGCCGCACA
* * *
14168984 CTCATTATCGTGGGTTGAACTTAGGCAACACGGAGTTCATTCCGCAATCTAAGATTGGATCGGAC
326 CTCATTATCATGGATTGAACTTAGGCAACAC-GAGTTCATTCCGCAATCTAAGATCGGATCGGAC
* *
14169049 CGAGGGTTACTGGCAGCAGGACAGCATGCCAGGGGGACGACGACCTGAGTGCCCACGCTCGTTTC
390 CGAGGGTTACTAGCAGCAGGACAGCACGCCAGGGGGACGACGACCTGAGTGCCCACGCTCGTTTC
14169114 ATGGGTAAA
455 ATGGGTAAA
*
14169123 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGGTCATTCCCAGTCTAAGATCAAA
1 CTTAGGCATACGGAGTTCAT-CCCATATCTAAGCATACGGAGGTCATTCCCAGTCTAAGATCAAA
* * * *
14169187 CC-AGACCGAGGGTTACG-GAGCAAGAT-TGACAGCACGTAGGGGGGA-CTGGGCTGATCCCCGG
65 CCGA-AACGAGGGTTACGACAGCAAGATCAGAC-GCACGTAGGGGGGATC-AGGCTGATCCCCGG
* * *
14169248 CTTGCGCATTCTGCCTCTCCGACCAGCTAAGTGCCCGCACGCCCATTTCATTGGTTGGCTTAGGC
127 CTTGCGCATTCTACCTCTCCGACCAGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
* * * *
14169313 TTAGGGAGTTGATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTTGCAGCGGGACCAGTAGC
192 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACCAGTAGC
* * * * * * *
14169378 ACGCT-GAGGGGGATCGAGCCGATCCCTGGCTTGCACATTATGCCTCTCCGGTCTGCTCAGCGCC
257 ACG-TAGAAGGGGACCGAGCCGATCCCTGACCTACACATTATGCCTCTCCGGCCGGCTCAGCG-C
* *
14169442 CGCACGCTCATT-TCATGGATTG-ACTTAGGCATACA-GAGTTCATTCC-CAGTCTAAGATCGGA
320 CGCACACTCATTATCATGGATTGAACTTAGGCA-ACACGAGTTCATTCCGCAATCTAAGATCGGA
14169503 TCGGAC
384 TCGGAC
14169509 TGATGGTTGC
Statistics
Matches: 326, Mismatches: 53, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
460 19 0.06
461 11 0.03
462 12 0.04
463 201 0.62
464 80 0.25
465 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (463 bp):
CTTAGGCATACGGAGTTCATCCCATATCTAAGCATACGGAGGTCATTCCCAGTCTAAGATCAAAC
CGAAACGAGGGTTACGACAGCAAGATCAGACGCACGTAGGGGGGATCAGGCTGATCCCCGGCTTG
CGCATTCTACCTCTCCGACCAGCTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCGGGACCAGTAGCACGT
AGAAGGGGACCGAGCCGATCCCTGACCTACACATTATGCCTCTCCGGCCGGCTCAGCGCCGCACA
CTCATTATCATGGATTGAACTTAGGCAACACGAGTTCATTCCGCAATCTAAGATCGGATCGGACC
GAGGGTTACTAGCAGCAGGACAGCACGCCAGGGGGACGACGACCTGAGTGCCCACGCTCGTTTCA
TGGGTAAA
Found at i:14169608 original size:158 final size:157
Alignment explanation
Indices: 14169217--14169655 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 157
14169207 CAAGATTGAC
* * *
14169217 AGCACGTAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGTGC
1 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGTGC
* * * *
14169282 CCGCACGCCCATTTCATTGGTTGGCTTAGGCTTAGGGAGTTGATTCCATGTCTAAGCCCCAGCCG
66 CCGCACGCTCATTTCA-TGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
** *
14169347 AACCGAGGGTTGTTGCAGCGGGACCAGT
130 AACCGAGGGTTGCAGCAGCAGGACCAGT
* * * * * * ** * * *
14169375 AGCACGCTGAGGGGGATCGAGCCGATCCCTGGCTTGCACATTATGCCTCTCCGGTCTGCTCAGCG
1 AGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGTG
* * ** *
14169440 CCCGCACGCTCATTTCATGGATTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGA
65 CCCGCACGCTCATTTCATGG-TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-
* * * * * * *
14169503 TCGGACTGATGGTTGCAGTAGTAGGATC-GAT
127 CCGAACCGAGGGTTGCAGCAGCAGGACCAG-T
* * * *
14169534 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGACCGGGTGAGTGC
1 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGTGC
* * *
14169599 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAGC
66 CCGCACGCTCATTTCAT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14169656 ATACGGAGTT
Statistics
Matches: 222, Mismatches: 51, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 101 0.45
159 115 0.52
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGTGC
CCGCACGCTCATTTCATGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
ACCGAGGGTTGCAGCAGCAGGACCAGT
Found at i:14169668 original size:26 final size:26
Alignment explanation
Indices: 14169628--14169680 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14169618 GTTGGCTTAG
14169628 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
*
14169654 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
14169680 G
1 G
14169681 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:14169880 original size:26 final size:26
Alignment explanation
Indices: 14169844--14169896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14169834 TGCACATTAG
* *
14169844 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTAATCCCCAGTCTAA
*
14169870 GCATAAGGAGTTAATTCCCAGTCTAA
1 GCATAAGGAGTTAATCCCCAGTCTAA
14169896 G
1 G
14169897 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTAATCCCCAGTCTAA
Found at i:14170222 original size:26 final size:26
Alignment explanation
Indices: 14170186--14170238 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14170176 GTTGACTTAG
14170186 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14170212 GCATATGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14170238 G
1 G
14170239 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14171445 original size:55 final size:55
Alignment explanation
Indices: 14171379--14171487 Score: 168
Period size: 55 Copynumber: 2.0 Consensus size: 55
14171369 GCTGCAGCAC
*
14171379 ACCAGTCGCCCGCACT-CAAGGTTGACACCAACCT-TTATGCTAGTCCCGCAAGGGG
1 ACCAGTCGCCCGCA-TGCAAGGTTGACACCAA-CTATCATGCTAGTCCCGCAAGGGG
*
14171434 ACCAGTCGCCCGCATGCATGGTTGACACCAACTATCATGCTAGTCCCGCAAGGG
1 ACCAGTCGCCCGCATGCAAGGTTGACACCAACTATCATGCTAGTCCCGCAAGGG
14171488 ACTTGGGTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
54 3 0.06
55 47 0.94
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.18
Consensus pattern (55 bp):
ACCAGTCGCCCGCATGCAAGGTTGACACCAACTATCATGCTAGTCCCGCAAGGGG
Found at i:14173690 original size:26 final size:26
Alignment explanation
Indices: 14173654--14173706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14173644 GTTGGCTTAG
14173654 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
14173680 GCATACGAAGTTCATTGCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
14173706 G
1 G
14173707 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14175314 original size:26 final size:26
Alignment explanation
Indices: 14175277--14175329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14175267 GTTGACTTAG
*
14175277 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
14175303 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14175329 G
1 G
14175330 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14175620 original size:159 final size:157
Alignment explanation
Indices: 14175457--14175806 Score: 355
Period size: 158 Copynumber: 2.2 Consensus size: 157
14175447 CATGAATTGG
* * * *
14175457 CTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCATCCAGACCGAGGGTTGTGGCAGTGGGA
1 CTTAGGCATACGGAGTTCATTCCA-GTCTAAGACCACATCCA-ACCGAGAGTTGTGGCAGTAGGA
* *
14175521 CCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCAGCTTGTGCATTATGCCTCTTCGGTCAG-
64 CCGACAGCACGCAG-GGGGGA-CCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGAT-AGA
** *
14175584 CTCAACCCCCGCACTTTCATTTTGTGGGTTGA
126 CTCAACCCCCGCACGCTCATTTCGTGGGTTGA
* * * * * ** *
14175616 CTTAGGCTTACAGAGTTCATTCCCAGTCTAAGATCAGATCGAATTGAGAGTTGTGGCAGTAGGAT
1 CTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCACATCCAACCGAGAGTTGTGGCAGTAGGAC
* * * ** * * *
14175681 CGATAGTACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATTGACTGA
65 CGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGATAGACTCA
* * * *
14175746 GCGCCCGCACGCTCGTTTCGTGGGTTGG
130 ACCCCCGCACGCTCATTTCGTGGGTTGA
14175774 CTTAGGCATACGGAGTTCATTCGCAGTCTAAGA
1 CTTAGGCATACGGAGTTCATTC-CAGTCTAAGA
14175807 GTTTGAGCCA
Statistics
Matches: 155, Mismatches: 31, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
157 6 0.04
158 88 0.57
159 53 0.34
160 8 0.05
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CTTAGGCATACGGAGTTCATTCCAGTCTAAGACCACATCCAACCGAGAGTTGTGGCAGTAGGACC
GACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGATAGACTCAA
CCCCCGCACGCTCATTTCGTGGGTTGA
Found at i:14175753 original size:158 final size:159
Alignment explanation
Indices: 14175506--14175806 Score: 365
Period size: 158 Copynumber: 1.9 Consensus size: 159
14175496 CAGACCGAGG
* *
14175506 GTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATTATG
1 GTTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATTATG
** * *
14175571 CCTCTTCGGTCAGCTCAACCCCCGCACTTTCATTTTGTGGGTTGACTTAGGCTTACAGAGTTCAT
66 CCTCTTCGGTCAGCTCAACCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
14175636 TCCCAGTCTAAGATCAGATCGAATTGAGA
131 TCCCAGTCTAAGATCAGATCGAATTGAGA
* * * * ** *
14175665 GTTGTGGCAGTAGGATCGATAGTACGTAG-GGGGGA-CCGAGCCGATCCCTGGCTTGCGCATTCT
1 GTTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCAGCTTGCGCATTAT
* * * * * * * *
14175728 GCCTCTTCGAT-TGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
65 GCCTCTTCGGTCAG-CTCAACCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
*
14175792 ATTCGCAGTCTAAGA
129 ATTCCCAGTCTAAGA
14175807 GTTTGAGCCA
Statistics
Matches: 118, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
157 5 0.04
158 89 0.75
159 24 0.20
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (159 bp):
GTTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATTATG
CCTCTTCGGTCAGCTCAACCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATCAGATCGAATTGAGA
Found at i:14176504 original size:26 final size:26
Alignment explanation
Indices: 14176475--14176527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14176465 GTTGACTTAG
14176475 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
14176501 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14176527 G
1 G
14176528 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14176974 original size:143 final size:144
Alignment explanation
Indices: 14176793--14177131 Score: 362
Period size: 148 Copynumber: 2.3 Consensus size: 144
14176783 CAGCACCCGC
* * * * **
14176793 ACGCTCATTTCTTGGGTTGACTTATGCATATGGAGTTCATTCCATGATC-GAGGGTTG-TA-GCA
1 ACGCTCGTTTCATGGGTTGGCTTAAGCATATGGAGTTCATTCCATG-TCAGAGCATTGATAGGCA
* * * *
14176855 GCAGGATTAACAGCAC-CTATGGGGGGATTGGGCCGATCCTCGGCTTGTACTTTCTACCTCTCCG
65 GCAGGATCAACAGCACGC-A-GGGGGGATCGGGCCGATCCCCGGCTTGTACATTCTACCTCTCCG
14176919 GCCGACTGAGCGCCCAT
128 GCCGACTGAGCGCCCAT
* * *
14176936 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCATTGACTTAG
1 ACGCTCGTTTCATGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTC--AGAGCATTGA--TAG
* * * * *
14177001 GCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTC
62 GCAGCAGGATCAACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTACATTCTACCTCTCC
* ** * *
14177066 GGCTGGTTGAGCGTCCGT
127 GGCCGACTGAGCGCCCAT
* *
14177084 AAGCTCGTTTCGTGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTC
1 ACGCTCGTTTCATGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTC
14177132 TAAGCCCCAG
Statistics
Matches: 162, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
142 2 0.01
143 41 0.25
145 5 0.03
148 95 0.59
149 18 0.11
150 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (144 bp):
ACGCTCGTTTCATGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCAGAGCATTGATAGGCAG
CAGGATCAACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTACATTCTACCTCTCCGGCC
GACTGAGCGCCCAT
Found at i:14177078 original size:148 final size:149
Alignment explanation
Indices: 14176852--14177135 Score: 383
Period size: 148 Copynumber: 1.9 Consensus size: 149
14176842 GAGGGTTGTA
* * * *
14176852 GCAGCAGGATTAACAGCACCTATGGGGGGATTGGGCCGATCCTCGGCTTGTACTTTCTACCTCTC
1 GCAGCAGGATCAACAGCACCTATGGGGGGATCGGGCCGATCCCCGGCTTGTACATTCTACCTCTC
* *
14176917 CGGCCGACTGAGCGCCCATACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGGCCGACTGAGCGCCCATAAGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATG
14176982 TCTAAGATCATTGACTTAG
131 TCTAAGATCATTGACTTAG
* * * *
14177001 GCAGCAGGATCGACAGCACGC-A-GGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCT
1 GCAGCAGGATCAACAGCAC-CTATGGGGGGATCGGGCCGATCCCCGGCTTGTACATTCTACCTCT
* * ** * * * *
14177064 TCGGCTGGTTGAGCGTCCGTAAGCTCGTTTCGTGGGTTGGCTTAAGCATATGGAGTTCATTCCAT
65 CCGGCCGACTGAGCGCCCATAAGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCAT
14177129 GTCTAAG
130 GTCTAAG
14177136 CCCCAGTCAG
Statistics
Matches: 116, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
148 97 0.84
149 18 0.16
150 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (149 bp):
GCAGCAGGATCAACAGCACCTATGGGGGGATCGGGCCGATCCCCGGCTTGTACATTCTACCTCTC
CGGCCGACTGAGCGCCCATAAGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATG
TCTAAGATCATTGACTTAG
Found at i:14177463 original size:26 final size:26
Alignment explanation
Indices: 14177427--14177479 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14177417 GTCGGCTTAG
14177427 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14177453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14177479 G
1 G
14177480 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14178207 original size:26 final size:26
Alignment explanation
Indices: 14178171--14178223 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14178161 GTTGACTTAG
*
14178171 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14178197 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14178223 G
1 G
14178224 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14180494 original size:171 final size:170
Alignment explanation
Indices: 14180193--14180633 Score: 489
Period size: 171 Copynumber: 2.6 Consensus size: 170
14180183 ACCACCCATT
* * * * * * * *
14180193 TGATCCCCGACTTGCGCATCCTGCCTCTCTGGTTGGTTGAGCACCCGCACGCACGTTTCGTGGGT
1 TGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCA-TCTCGTTTCGTGGGT
* *
14180258 TGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAG
65 TGACTTAGGCATACGGAGTTCATTCACAGTCTAAGACCAGATCAGACCGAGGGTTGCGACAGCAG
14180323 GACCAACAGCAGGAAT-GGCAGCACGCA-AGGTGGGACCGGG-
130 GACCAACAGCAGG-ATCGGCAGCACGCAGAGG-GGGACCGGGC
* *
14180363 TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTATACTCGTTTCATGGG
1 T-GATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCAT-CTCGTTTCGTGGG
* * * * *
14180428 TTGGCTTAGACATACGGAGTTCATTCA-ATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAG
64 TTGACTTAGGCATACGGAGTTCATTCACA-GTCTAAG-ACCAGATCAGACCGAGGGTTGCGACAG
* * *
14180491 CAGGACCGACAGCAGGATCGGCAGCACGTAGAGGGGGATCGGGC
127 CAGGACCAACAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGC
** * * * * * *
14180535 TGAT-CCTCGGCTTGTACACTATGCCTCTTCAGCCGGCTGAGCGCCCGCATCTCGTTTCGTGGGT
1 TGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATCTCGTTTCGTGGGT
* * *
14180599 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCATTCACAGTCTAAG
14180634 CATATGGAGT
Statistics
Matches: 227, Mismatches: 35, Indels: 18
0.81 0.12 0.06
Matches are distributed among these distances:
170 48 0.21
171 172 0.76
172 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (170 bp):
TGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCATCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCACAGTCTAAGACCAGATCAGACCGAGGGTTGCGACAGCAGG
ACCAACAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGC
Found at i:14181144 original size:26 final size:26
Alignment explanation
Indices: 14181108--14181160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14181098 GTTGGCTTAG
14181108 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14181134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14181160 G
1 G
14181161 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14181860 original size:26 final size:26
Alignment explanation
Indices: 14181830--14181882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14181820 GTGGACTTAG
14181830 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
14181856 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14181882 G
1 G
14181883 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14182561 original size:26 final size:26
Alignment explanation
Indices: 14182525--14182577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14182515 GTTGACTTAC
*
14182525 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14182551 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14182577 G
1 G
14182578 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14183593 original size:868 final size:864
Alignment explanation
Indices: 14182325--14183976 Score: 2081
Period size: 868 Copynumber: 1.9 Consensus size: 864
14182315 GTACACTCGA
* * *** *
14182325 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCGGTCAGATCGAGGGTGT
1 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCAGACCGAGGGTGT
* * * * *
14182390 GGCAACAAGACCGGCAGCGAGATTGGCAGCATGCGGAGGGGGATCGGACTGATCCTCGGCTTGGG
66 GGCAACAAGACCGGCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGACTGATCCCCGACTTGGG
* * * *
14182455 CATTACGCCTCTCCGACTGGCCACTCTGATCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGA
131 CATTACGCCTCTCCGACTGGCCACTCAGACCGACTGAGCACCCGCACACTCGTTTCGTGGGTTCA
* *
14182520 CTTACGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGAT
196 CTTACGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGAT
* ** * * *
14182585 CGAACCAAGGGTTGCAACAGTAGGATCGGTAGCATGCAGGGAGGACCGAGTCGATCCCTGGCTTA
261 CGAACCAAGGGTTGCAACAGCAGGATCGACAGCATGCAGGGAGGACCGAGGCGATCCCCGCCTTA
* * *
14182650 CACATTCTGCCTCTATGACTGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAAGCATAG
326 CACATTCTGCCTCTACGACTGACTGAGCACCCGCACGCCCGTTTCAAGGGTTGGCTTAAGCATAG
* *
14182715 GGAGTTCATTCCATGTCTAAACCCCAGTCGAATCGAGGGCTGTGGTAGTGAGACCAACAGCAAGC
391 GGAGTTCATTCCATGTCTAAACCCCAGTCGAACCGAGGGCTGTGGTAGCGAGACCAACAGCAAGC
** * * * * * *
14182780 AGAGGGGGATCGAGCTGATCCCCAGCTTACGCATTATGCCTCTTCG-GCTGGCTCAGCGCCCG-C
456 AGAAAGCGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTTCGATC-AGCTCAGCGCCCGAC
* * *
14182843 ACGCTCATTTTGTGGGTTGACATATGCATACGAAGTTCATTCCTAGTCTAAGATC-GAACCAGAC
520 ACG--CATTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGAC
* * * *
14182907 CGAGGGTTGTGGCAGCAAGATCGACAGTACACAGGGAGGGACTG-G-TCGATCCCTGGCTTGCAC
582 CGAGGGTTCTAGCAGCAAGATCGACAGCACACA-GG-GGGACCGAGCT-GAT-CCTGGCTTGCAC
* * * **
14182970 ATTTTGCCTCTCTAG-TCGGCTGAGCGCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGG
643 ATTTTGCCTCT-TAGACCAGCTGAGCGCCCGCACACTCGTTTCGTGGGAGGACTTAGGCATACGG
* *
14183034 AGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATCGGATCAAACCGAAGG-
707 AGTTCATCCCAT-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCG-AGGC
14183097 TTGCGATAGCAGGATCGACAGCATGCAGGGGGACCGGCCTGATCCCTGGCTTACGCATTCTACCA
770 TTGCGATAGCAGGATCGACAGCATGCAGGGGGACCGGCCTGATCCCTGGCTTACGCATTCTACCA
14183162 CTCCGGTCGATTGAGCGCCTGCACGCTCAT
835 CTCCGGTCGATTGAGCGCCTGCACGCTCAT
*
14183192 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCGGACCGAGGGTTG
1 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCAGACCGAGGG-TG
*
14183257 TGGCAGCAAGACCGGCAGCGAGATCGGCAGCACGCAGAGGGGGATC-GAGCTGATCCCCGACTTG
65 TGGCAACAAGACCGGCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGA-CTGATCCCCGACTTG
* * * * ** *
14183321 TGCATTATGCCTCTCCGGCTGGCCTCTCCAG-CCGGTTGAGCACCCGCACGCTCGTTTCG-GGCG
129 GGCATTACGCCTCTCCGACTGGCCACT-CAGACCGACTGAGCACCCGCACACTCGTTTCGTGG-G
* ** *
14183384 TTCACTTAGGCATACGGAGTTCATCCGTAGTCTAAGCATACAGAGTTCGTTCTCAGTCTAAGATC
192 TTCACTTACGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATC
* * * *** *
14183449 GGATTGGACTGGGGGTTGCAACAGCAGGATCGACAGCATGCAGAGG-GGATC-AGGCTGATCCCC
257 AGATCGAACCAAGGGTTGCAACAGCAGGATCGACAGCATGCAG-GGAGGACCGAGGC-GATCCCC
*** * *
14183512 GCCTTGTGCATTCTGCCTCTCCGA-TCGACTGAGCGCCCGCACGCCCGTTTCAAGGGTTGGCTTA
320 GCCTTACACATTCTGCCTCTACGACT-GACTGAGCACCCGCACGCCCGTTTCAAGGGTTGGCTTA
* * * * * *
14183576 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGAC
384 AGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGAACCGAGGGCTGTGGTAGCGAGACCAAC
* * * * * *
14183641 AGCACGCAGAAAGCGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCGATCAGCTCAGTG
449 AGCAAGCAGAAAGCGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTTCGATCAGCTCAGCG
*
14183706 CCCGACCACGCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
514 CCCGA-CACGCATTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
* * * * ** *
14183771 AGACCGAGGGTTCTAGTAGTAGGATCGATAGCATGCAGGGGGACCGAGCTGATCCTGGCTTGCGC
578 AGACCGAGGGTTCTAGCAGCAAGATCGACAGCACACAGGGGGACCGAGCTGATCCTGGCTTGCAC
* * * ** *
14183836 ATTTTGCCTCTTCGACCAGCTGAGTGCCTGCATGCTCGTTTCGTGGGAGGGCTTAGGCATACGGA
643 ATTTTGCCTCTTAGACCAGCTGAGCGCCCGCACACTCGTTTCGTGGGAGGACTTAGGCATACGGA
* * * *
14183901 GTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGCTTG
708 GTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGCTTG
*
14183966 CGGTAGCAGGA
773 CGATAGCAGGA
14183977 CCAGCAGTAG
Statistics
Matches: 663, Mismatches: 106, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
865 5 0.01
866 131 0.20
867 70 0.11
868 447 0.67
869 6 0.01
870 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (864 bp):
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAACCAGACCGAGGGTGT
GGCAACAAGACCGGCAGCGAGATCGGCAGCACGCAGAGGGGGATCGGACTGATCCCCGACTTGGG
CATTACGCCTCTCCGACTGGCCACTCAGACCGACTGAGCACCCGCACACTCGTTTCGTGGGTTCA
CTTACGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGAT
CGAACCAAGGGTTGCAACAGCAGGATCGACAGCATGCAGGGAGGACCGAGGCGATCCCCGCCTTA
CACATTCTGCCTCTACGACTGACTGAGCACCCGCACGCCCGTTTCAAGGGTTGGCTTAAGCATAG
GGAGTTCATTCCATGTCTAAACCCCAGTCGAACCGAGGGCTGTGGTAGCGAGACCAACAGCAAGC
AGAAAGCGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTTCGATCAGCTCAGCGCCCGACA
CGCATTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
GGTTCTAGCAGCAAGATCGACAGCACACAGGGGGACCGAGCTGATCCTGGCTTGCACATTTTGCC
TCTTAGACCAGCTGAGCGCCCGCACACTCGTTTCGTGGGAGGACTTAGGCATACGGAGTTCATCC
CATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGCTTGCGATAGCA
GGATCGACAGCATGCAGGGGGACCGGCCTGATCCCTGGCTTACGCATTCTACCACTCCGGTCGAT
TGAGCGCCTGCACGCTCAT
Found at i:14183739 original size:159 final size:156
Alignment explanation
Indices: 14183565--14183920 Score: 378
Period size: 156 Copynumber: 2.3 Consensus size: 156
14183555 CCCGTTTCAA
* * * * * *
14183565 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGT
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTCTAGT
* *
14183629 AGCGGGACCGACAGCACGCAGAAAGCGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTTCG
66 AGCAGGACCGACAGCACGCAG--AGCGACCGAGCCGATCCT-GGCTTGCACATTATGCCTCTTCG
*
14183694 ATCAGCTCAGTGCCCGACCA-CGCATTTCGT
128 ACCAGCTCAGTGCCCG--CAGCGCATTTCGT
* * *
14183724 GGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTCTAG
1 GGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTCTAG
* * * * * * * * *
14183787 TAGTAGGATCGATAGCATGCAGGGGGACCGAGCTGATCCTGGCTTGCGCATTTTGCCTCTTCGAC
65 TAGCAGGACCGACAGCACGCAGAGCGACCGAGCCGATCCTGGCTTGCACATTATGCCTCTTCGAC
* * * *
14183852 CAGCTGAGTGCCTGCATGCTCGTTTCGT
130 CAGCTCAGTGCCCGCA-GCGCATTTCGT
**
14183880 GGGAGGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14183921 TATGGAGTTC
Statistics
Matches: 162, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
154 2 0.01
155 3 0.02
156 73 0.45
157 15 0.09
158 3 0.02
159 63 0.39
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTCTAGT
AGCAGGACCGACAGCACGCAGAGCGACCGAGCCGATCCTGGCTTGCACATTATGCCTCTTCGACC
AGCTCAGTGCCCGCAGCGCATTTCGT
Found at i:14183921 original size:26 final size:26
Alignment explanation
Indices: 14183892--14183944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14183882 GAGGGCTTAG
14183892 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14183918 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14183944 G
1 G
14183945 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14184125 original size:26 final size:26
Alignment explanation
Indices: 14184089--14184141 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14184079 GTTGACTTAG
*
14184089 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14184115 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14184141 G
1 G
14184142 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14184128 original size:197 final size:194
Alignment explanation
Indices: 14183788--14184173 Score: 490
Period size: 197 Copynumber: 2.0 Consensus size: 194
14183778 GGGTTCTAGT
* * * * *
14183788 AGTAGGATCGATAGCATGCAGGGGGACCGAGCTGATCCTGGCTTGCGCATTTTGCCTCTTCGACC
1 AGTAGGATCGATAGCACGCAGGGGGACCAAGCCGATCCTGGCATGCGCATTCTGCCTCTTCGACC
* * * *
14183853 AGCTGAGTGCCTGCATGCTCGTTTCGTGGGAGGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 AACTGAGTGCCTGCACGCTCGTTTCGTGGGAGGACTTAGGCATACGGAGTTCATCCCATGTCTAA
** ** *
14183918 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGCTTGCGGTAGCAGGACCAGC
131 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGCTTGCGATAGCAGGACCAGC
* *
14183982 AGTAGGATTGATAGCACGCAGGGGGGGACTAAGCCGATCCTCGGCATGCGCATTCTGCCTC-TCT
1 AGTAGGATCGATAGCACGCA--GGGGGACCAAGCCGATCCT-GGCATGCGCATTCTGCCTCTTC-
* * **
14184046 GGCTAACTGAGTG-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
62 GACCAACTGAGTGCCT-GCACGCTCGTTTCGTGGGAGGACTTAGGCATACGGAGTTCAT-CCCAT
* * *
14184109 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGATAGCAGGA
125 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGCTTGCGATAGCAGGA
14184174 TCGGCAGCAC
Statistics
Matches: 163, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
194 18 0.11
196 20 0.12
197 122 0.75
198 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (194 bp):
AGTAGGATCGATAGCACGCAGGGGGACCAAGCCGATCCTGGCATGCGCATTCTGCCTCTTCGACC
AACTGAGTGCCTGCACGCTCGTTTCGTGGGAGGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGCTTGCGATAGCAGGACCAGC
Found at i:14184467 original size:26 final size:26
Alignment explanation
Indices: 14184431--14184483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14184421 GTTGACTTAG
14184431 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14184457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14184483 G
1 G
14184484 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14185443 original size:158 final size:155
Alignment explanation
Indices: 14185008--14185498 Score: 549
Period size: 158 Copynumber: 3.1 Consensus size: 155
14184998 CCCAGTCTAA
**
14185008 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATC-AACCGGACCGAGGGTTGTGGCAGCAGGATC-ACA
* * * * *
14185073 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTTCGTATTCTGCCTCTCCGGTCGGTTGAGCTCC
63 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
14185138 CGCATGCCCGTTTCGTGGGTTGGCTTAG
128 CGCAAGCTCGTTTCGTGGGTTGGCTTAG
* **
14185166 GCATAGGGAGTTCATTCCATGTCTAAGGCA-CAACCGGACCGAAAGTTGTGGCAGCGAGG---AC
1 GCATACGGAGTTCATTCCA-GTCTAA-G-ATCAACCGGACCGAGGGTTGTGGCAGC-AGGATCAC
* * * * *
14185227 AGCACGCAGAGGGGGATCGGGCCTATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCG
62 AGCACGCA-AGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * *
14185292 CTCGCAAGCTCGTTTCATGGGTTGACTTAT
126 CCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
14185322 GCATACGGAGTTAATTCGTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCA-ACCGGACCGAGGGTTGTGGCAGCAGGATC-ACA
* * * * * *
14185387 GCCCGTAAGGGGGACCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGATCGGCTGAGTGCC
63 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
14185452 CGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CGCAAGCTCGTTTCGTGGGTTGGCTTAG
*
14185480 GCATACGGAGTTTATTCCA
1 GCATACGGAGTTCATTCCA
14185499 TGCCTAAGCA
Statistics
Matches: 274, Mismatches: 47, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
154 1 0.00
155 14 0.05
156 109 0.40
157 5 0.02
158 131 0.48
159 13 0.05
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAACCGGACCGAGGGTTGTGGCAGCAGGATCACAGCA
CGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGC
AAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14186457 original size:26 final size:26
Alignment explanation
Indices: 14186407--14186459 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14186397 GTTGGCTTAG
* *
14186407 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
14186433 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
14186459 G
1 G
14186460 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:14186812 original size:26 final size:26
Alignment explanation
Indices: 14186782--14186834 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14186772 GTTGACTTAG
*
14186782 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** *
14186808 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14186834 G
1 G
14186835 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14186992 original size:362 final size:348
Alignment explanation
Indices: 14186533--14187347 Score: 875
Period size: 354 Copynumber: 2.3 Consensus size: 348
14186523 GACCGGGCCA
* * * * * *
14186533 ATCCCTGACTTGTGCATTCTGCCCCTCCCACCGGTTGAGCGCTCGCACACTCGTTTCATGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTG
* * * * * * *
14186598 GCTTAGGCGTATGGAGTTCTTTCCATGTCTAAGCCGGATCGAGGGTTGTGGCAGCAAGACTGGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGGACCGAGGGTTATGGCAGCAAGACCGGAA
** * *
14186663 GCGGGATCG-CTAGCATGCAGAGGGGGACCAAGCTGATCCCCGGCTTGCACATTATGCCTCTCCG
131 GCGGGATCGAC-AGCACACAGAGGGGGACCAAGCTGATCCCCAGCTTACACATTATGCCTCTCCG
*
14186727 ACCGGCCTCTCCTGTCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
195 ---GG------C-G--G-CTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * * *
14186792 TTCATCCCCATTCTAAGCATATTGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTT-
247 TTCATCCCCAGTCTAAGCATA-CGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTA
* *
14186855 -GTAGCAGCAAGATCGGTAGCATGCAGGGGGGACCAAGTCG
310 CG-A-CAGCAAGATCGGTAGCACGCAGGGGCGACCAAGTCG
* * * *
14186895 ATCCCCGACTTGTGCATTCTGCCCCTCCGACTGGCTGAGCACCCACACGCTCATTTCGTGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTG
* * *
14186960 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGTAGCAGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCT-A-----AGCCGGACCGAGGGTTATGGCAGCAAGA
* * * *
14187025 CCGGAAGCGGGATCGACAGCACACTGAGGGGGATCGAGCTGATCCCCAGCTTACGCATTATGCCT
125 CCGGAAGCGGGATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCAGCTTACACATTATGCCT
* * * *
14187090 CTCCGGGCGGCTGAATGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATCCC
190 CTCCGGGCGGCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
* *
14187155 CAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGTAGG
255 CAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGCAAG
* * * *
14187220 ATCGGTAGGACGGAGGGGCGATCGAGTCG
320 ATCGGTAGCACGCAGGGGCGACCAAGTCG
* * * * * * * * *
14187249 ATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGTGCCCACATGCCCGTTTCATGGGTT-
1 ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTG
*
14187313 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
14187348 CCAGCCGGGC
Statistics
Matches: 382, Mismatches: 61, Indels: 35
0.80 0.13 0.07
Matches are distributed among these distances:
347 4 0.01
352 1 0.00
353 28 0.07
354 114 0.30
355 64 0.17
356 2 0.01
358 1 0.00
359 1 0.00
362 81 0.21
363 1 0.00
365 2 0.01
368 82 0.21
369 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (348 bp):
ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGGACCGAGGGTTATGGCAGCAAGACCGGAA
GCGGGATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCAGCTTACACATTATGCCTCTCCGG
GCGGCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
AAGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGACAGCAAGATCGGT
AGCACGCAGGGGCGACCAAGTCG
Found at i:14187467 original size:158 final size:157
Alignment explanation
Indices: 14187247--14187663 Score: 392
Period size: 158 Copynumber: 2.6 Consensus size: 157
14187237 GCGATCGAGT
* * * * * * * * * * *
14187247 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGTGCCCACATGCCCGTTTCATGGGT
1 CGATCCCCGGCTTACACATTATGCCTTTCTGACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGT
* ** * ***
14187312 TGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGGCCGAGGGTTGTGGCAGTGGG
66 TGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGCACCGAGAGTTGTGGCAGCAAG
* * *
14187377 ATCGGCAACACGCAGAGCGGG-ACCGGGT
131 ATCGACAACACGCAG-G-GGGAACCAGGC
* * * * *
14187405 CGAAT-CCTGGCTTGCGCATTATGCCTTT-TCGGCCAGCTCAGCGCTCGCACGCTCGTTTCATGG
1 CG-ATCCCCGGCTTACACATTATGCCTTTCT-GACCAGCTCAGCGCCCGCACGCTCGTTTCATGG
* ** ** *
14187468 GTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGATCGGGTCGCACCGAGAGTTGTGGCAG
64 GTTG-CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGCCGCACCGAGAGTTGTGGCAG
*
14187532 CAAGATCGACAGCACGCAGGGGGAACCAGGC
127 CAAGATCGACAACACGCAGGGGGAACCAGGC
* * * * * *
14187563 CGATCCCCGGCTTACACATTTTGCCTTTCTGATCGGTTGAGCGCCCGCACGCTCGTTTCATGCGT
1 CGATCCCCGGCTTACACATTATGCCTTTCTGACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGT
14187628 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 T-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14187664 ATACGGAGTT
Statistics
Matches: 210, Mismatches: 40, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.03
158 138 0.66
159 66 0.31
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (157 bp):
CGATCCCCGGCTTACACATTATGCCTTTCTGACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGT
TGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGCACCGAGAGTTGTGGCAGCAAG
ATCGACAACACGCAGGGGGAACCAGGC
Found at i:14188031 original size:26 final size:26
Alignment explanation
Indices: 14188002--14188054 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14187992 GTTGACTTAG
14188002 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAGTCTAA
14188028 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
14188054 G
1 G
14188055 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:14189612 original size:158 final size:159
Alignment explanation
Indices: 14189259--14189760 Score: 383
Period size: 158 Copynumber: 3.2 Consensus size: 159
14189249 CCTAGTCTAA
* * * * *
14189259 GCATACGAAGTTCATTCC-TGATCTAAGATCAAACC-AGACCAAGGGTTACGACAGC-AGAATCA
1 GCATACGAAGTTAATTCCATG-TCTAAGACCAAACCGA-ACCAAGGGTTATGACAGCAAG-ACCG
* * * * * * * *
14189321 TCAACACGCAG-GAGGGACCGGGCCGATCCCCGATTTGTGCATTCTGCCTCTCCAGTCGGCTGAG
63 GCAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTCAG
*
14189385 CGCCCGCACACCCATTTTATGGGTTAGCTTAG
128 CGCCCGCACACCCATTTCATGGGTTAGCTTAG
* * * * * * * * *
14189417 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAAGACCGGCA
1 GCATACGAAGTTAATTCCATGTCTAAGACCAAACCGAACCAAGGGTTATGACAGCAAGACCGGCA
* * * *
14189482 GCACGTAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATG-CTTTTCGGTCGGCTCAGCGC
66 GCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGC
* * * *
14189546 CCGTACGCTCATTTCGTGGGTT-GACTTAG
131 CCGCACACCCATTTCATGGGTTAG-CTTAG
* *** *
14189575 GCATACGAAGTTAATTCC-TAGTCTAAGATCAAACCGAACCAAGGGTTATGACAGCAAGTTTGAC
1 GCATACGAAGTTAATTCCAT-GTCTAAGACCAAACCGAACCAAGGGTTATGACAGCAAGACCGGC
* * * ** * * * * *
14189639 AGC-CTGCAGAGGGGGATCGAGCCGATCCTTGACTTGCACATTCTGCCTCTCC-GACCGGTTGAG
65 AGCAC-GTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAG-TCGGCTCAG
* * * * * *
14189702 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACACCCATTTCATGGGTTAGCTTAG
** *
14189734 GCATACCTAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTAATTCCATGTCTAAG
14189761 CATACGGAGT
Statistics
Matches: 271, Mismatches: 62, Indels: 21
0.77 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 172 0.63
159 94 0.35
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (159 bp):
GCATACGAAGTTAATTCCATGTCTAAGACCAAACCGAACCAAGGGTTATGACAGCAAGACCGGCA
GCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGC
CCGCACACCCATTTCATGGGTTAGCTTAG
Found at i:14189771 original size:26 final size:24
Alignment explanation
Indices: 14189742--14189792 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 24
14189732 AGGCATACCT
14189742 AGTTCATT-CCATGTCTAAGCATACGG
1 AGTTCATTCCCA-GTCTAA-CAT-CGG
14189768 AGTTCATTCCCAGTCTAACATCGG
1 AGTTCATTCCCAGTCTAACATCGG
14189792 A
1 A
14189793 CCGGACCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.17
25 3 0.12
26 14 0.58
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (24 bp):
AGTTCATTCCCAGTCTAACATCGG
Found at i:14190168 original size:513 final size:513
Alignment explanation
Indices: 14189325--14190298 Score: 1244
Period size: 513 Copynumber: 1.9 Consensus size: 513
14189315 GAATCATCAA
* * * ** * *
14189325 CACGCAGGAGGGACCGGGCCGATCCCCGATTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCCC
1 CACGCAGGAGGGACCAGACCGATCCCCGACTTGCACATTCTGCCTCTCCAGCCGACTGAGCGCCC
* **
14189390 GCACACCCATTTTATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
66 GCACACCCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* * **
14189455 CCGAGGGTTGTGGCAGCAAGACCGGCAGCACGTAGAGGGGGACCGGGCTGATCCCCGACTTGCGC
131 CCGAAGGTAGTGGCAGCAAGACCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCGACTTGCGC
*** * **
14189520 ATTATGCTTTTCGGTCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAG
196 ATTATGCTCCCCGGTCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAG
* * ** * *
14189585 TTAATTCCTAGTCTAAGATCAAACCGAACCAAGGGTTATGACAGCAAGTTTGACAGCCTGCAGAG
261 TTAACTCCCAGTCTAAGATCAAACCGAACCAAGGGTTACAACAGCAAGATCGACAGCCTGCAGAG
* *
14189650 GGGGATCGAGCCGATCCTTGACTTGCACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTC
326 GGGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTC
* * *
14189715 GTTTCGTGGGTTGGCTTAGGCATACCTAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
391 GTTTCGTGGGTTGGCTTAGCCATACCGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
14189780 GTCTAACATCGGACCGGACCGAGGGTTGCGTGAGCAGGACCTGCAGCAGGATCGGTAG
456 GTCTAACATCGGACCGGACCGAGGGTTGCGTGAGCAGGACCTGCAGCAGGATCGGTAG
*
14189838 CACGCAGGGGGGACCAGACCGATCCCCGACTTGCACATTCTGCCTCTCC-GACCGACTGA-CTGC
1 CACGCAGGAGGGACCAGACCGATCCCCGACTTGCACATTCTGCCTCTCCAG-CCGACTGAGC-GC
* * * *
14189901 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTGAGCCCCAGCCG
64 CCGCACACCCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *** ** *
14189966 GATCGAAGGTAGTGGCAGTGGGACCGGCAGCACACAGAGGGGGATTGGG-TCGATCCCCGGCTTG
129 AACCGAAGGTAGTGGCAGCAAGACCGGCAGCACACAGAGGGGGACCGGGCT-GATCCCCGACTTG
*
14190030 CGCATTATGCCTCCCCGG-CAGGTTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
193 CGCATTATG-CTCCCCGGTC-GGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
* *** * * * *
14190094 C-AGAGTTCACTCCCAGTCTAAGATTGGACC-AGACCGAGGGTTGCAACAGCAGGATCGATAGCG
256 CGA-AGTTAACTCCCAGTCTAAGATCAAACCGA-ACCAAGGGTTACAACAGCAAGATCGACAGC-
* * * * * * *
14190157 C-GTAG-GGGGGATTGGGCCGATCCCTGGCTTGTACATTCTGCCTGTCCGACCGGCTGAGCACCT
318 CTGCAGAGGGGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCC
* * *
14190220 GCACGCTCGTTTTGTGGGTTGGCTTAGCCATACGGAATTCATTCCATGTCTAAGCATATGGAGTT
383 GCACGCTCGTTTCGTGGGTTGGCTTAGCCATACCGAATTCATTCCATGTCTAAGCATACGGAGTT
*
14190285 CATTCCTAGTCTAA
448 CATTCCCAGTCTAA
14190299 GATTTTGAGC
Statistics
Matches: 389, Mismatches: 64, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
512 3 0.01
513 293 0.75
514 92 0.24
515 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (513 bp):
CACGCAGGAGGGACCAGACCGATCCCCGACTTGCACATTCTGCCTCTCCAGCCGACTGAGCGCCC
GCACACCCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
CCGAAGGTAGTGGCAGCAAGACCGGCAGCACACAGAGGGGGACCGGGCTGATCCCCGACTTGCGC
ATTATGCTCCCCGGTCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAG
TTAACTCCCAGTCTAAGATCAAACCGAACCAAGGGTTACAACAGCAAGATCGACAGCCTGCAGAG
GGGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGGCTTAGCCATACCGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
GTCTAACATCGGACCGGACCGAGGGTTGCGTGAGCAGGACCTGCAGCAGGATCGGTAG
Found at i:14190286 original size:26 final size:26
Alignment explanation
Indices: 14190248--14190299 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14190238 TTGGCTTAGC
14190248 CATACGGAATTCATTCC-ATGTCTAAG
1 CATACGGAATTCATTCCTA-GTCTAAG
* *
14190274 CATATGGAGTTCATTCCTAGTCTAAG
1 CATACGGAATTCATTCCTAGTCTAAG
14190300 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (26 bp):
CATACGGAATTCATTCCTAGTCTAAG
Found at i:14191136 original size:159 final size:159
Alignment explanation
Indices: 14190832--14191235 Score: 476
Period size: 159 Copynumber: 2.5 Consensus size: 159
14190822 CCCCGGCTTA
* * * * *
14190832 CGCATTCTGCCTCTCCGACCGACTGAGCGCCCCCACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGATCGACTCAGCGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATAG
* *
14190897 GGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
66 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTCGCAGCGGGACCGACAGCACGC
** * *
14190962 AAAGGGGGACTGAGCCAATCCCTGGCTTG
131 AAAGGCAGACCGAGCCAATCCCTGACTTG
* * * *
14190991 CGCATTAC-GCCTCTCTGGTC-AGCTCAGCGCCCACACGCCTGTTTCATAGGTTGGCTTAGGCAT
1 CGCATT-CTGCCTCTCCGATCGA-CTCAGCGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCAT
* * *
14191054 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTCGCAGTGGGACC-AGTAGCA
64 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTCGCAGCGGGACCGA-CAGCA
* * * *
14191118 GGCAGAGGCATACCGAGCCAGTCCCTGACTTG
128 CGCAAAGGCAGACCGAGCCAATCCCTGACTTG
* * ** *
14191150 CGCATTCTGCCTCTCCGATCGACTGAGTGCCTGCATG-CTCGTTTCGTGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGATCGACTCAGCGCCCACACGCCT-GTTTCGTGGGTTGGCTTAGGCATA
*
14191214 CGGAGTTCATTCCCA-GTCTAAG
65 GGGAGTTCATT-CCATGTCTAAG
14191236 AGTTTAAGCC
Statistics
Matches: 206, Mismatches: 32, Indels: 14
0.82 0.13 0.06
Matches are distributed among these distances:
158 5 0.02
159 196 0.95
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGATCGACTCAGCGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTCGCAGCGGGACCGACAGCACGC
AAAGGCAGACCGAGCCAATCCCTGACTTG
Found at i:14192560 original size:26 final size:26
Alignment explanation
Indices: 14192530--14192581 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14192520 GTTGACTTAG
14192530 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14192556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14192582 TATCAAACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14192578 original size:196 final size:194
Alignment explanation
Indices: 14192233--14192595 Score: 461
Period size: 194 Copynumber: 1.9 Consensus size: 194
14192223 GGGTTGACTT
* * * *
14192233 AGGATCGACAGCACGCAGAGGGGACTGGGCCAGTCTCGCTTATGCATTCTAACCTCTCCGGCTGG
1 AGGATCGACAGCACGCAGAGGGGACTGGGCCAGTCCCGCTTACGCATTCTAACCTCTCCGACCGG
* * * * *
14192298 CTTGAGCGCCCGAATGCTCGTTTTCGTGGTTGGCTTAGGCAATGGAGTTATTCCATGTCTAAGCA
66 CTTGAGCACCCGAATGCTCGTTTTCATGGTTGACTTAGGCAACGGAGTTATCCCATGTCTAAGCA
* *
14192363 TACAGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGCTTCCGATAGTAGGACCAACAGC
131 TACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGCTTCCGATAGTAGGACCAACAGC
* *
14192427 AGGATCGACAGCACGCAGGGGGGA-TCGGGTC-GATCCCCGGCTTACGCATTCT-ACCTCTCCGA
1 AGGATCGACAGCACGCAGAGGGGACT-GGGCCAG-T-CCC-GCTTACGCATTCTAACCTCTCCGA
14192489 CCGGC-TGAGCACCC-ACATGCTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
62 CCGGCTTGAGCACCCGA-ATGCTCGTTTTCAT-GGTTGACTTAGGCA-ACGGAGTT-AT-CCCAT
* *
14192550 GTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAAACTGGACC
122 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACC
14192596 AATGGTTGCG
Statistics
Matches: 145, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
193 8 0.06
194 56 0.39
195 22 0.15
196 56 0.39
197 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.24
Consensus pattern (194 bp):
AGGATCGACAGCACGCAGAGGGGACTGGGCCAGTCCCGCTTACGCATTCTAACCTCTCCGACCGG
CTTGAGCACCCGAATGCTCGTTTTCATGGTTGACTTAGGCAACGGAGTTATCCCATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGCTTCCGATAGTAGGACCAACAGC
Found at i:14192945 original size:111 final size:111
Alignment explanation
Indices: 14192751--14192969 Score: 384
Period size: 111 Copynumber: 2.0 Consensus size: 111
14192741 CCCCAACCAA
* * * *
14192751 ACTGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAAGGGGACCGAGTCGATCCCCAGCTTGCG
1 ACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAAAAGGAGACCGAGTCGATCCCCAGCTTGCG
* *
14192816 TATTCTACCTTTCTGGCTGGTAGAGCGCCCGCACGCTCATTTCATG
66 CATTCTACCTTTCTGGCTGGTAGAGCACCCGCACGCTCATTTCATG
14192862 ACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAAAAGGAGACCGAGTCGATCCCCAGCTTGCG
1 ACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAAAAGGAGACCGAGTCGATCCCCAGCTTGCG
14192927 CATTCTACCTTTCTGGCTGGTAGAGCACCCGCACGCTCATTTC
66 CATTCTACCTTTCTGGCTGGTAGAGCACCCGCACGCTCATTTC
14192970 GTGGGTTGGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
111 102 1.00
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (111 bp):
ACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAAAAGGAGACCGAGTCGATCCCCAGCTTGCG
CATTCTACCTTTCTGGCTGGTAGAGCACCCGCACGCTCATTTCATG
Found at i:14193021 original size:26 final size:26
Alignment explanation
Indices: 14192984--14193036 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14192974 GTTGGCTTAG
*
14192984 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14193010 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14193036 G
1 G
14193037 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14193732 original size:26 final size:26
Alignment explanation
Indices: 14193703--14193758 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14193693 CGGGTTGATT
*
14193703 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
* *
14193729 TAAGCAGATGGAGTTCATTCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
14193755 TAAG
1 TAAG
14193759 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATCCCCAGTC
Found at i:14194146 original size:156 final size:158
Alignment explanation
Indices: 14193840--14194216 Score: 469
Period size: 156 Copynumber: 2.4 Consensus size: 158
14193830 CGGTTGACTG
* * * * *
14193840 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTTTGAGCCCC
1 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACC
* * *
14193905 AACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCAG
66 AACCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGATCAGGCCGATCCCCAG
* *
14193970 CTTGCGCATTATGCCTTCCGACCGGCTCA
131 CTTACGCATTATGCCTTCCGACCAGCT-A
* * *
14193999 A-CGCCCGTACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCC-TGTCTAAG-ATC
1 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACC
* * * * *
14194060 AGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGGGGGGGAT-GGGCCGATCCCCA
66 A-ACCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGATCAGGCCGATCCCCA
* *
14194124 GCTTACGCATTTTATGTC-TCCGACTAGCTA
130 GCTTACGCA--TTATGCCTTCCGACCAGCTA
* * *
14194154 AGCGCCCATACACTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCA
1 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
14194217 TATGGAGTTC
Statistics
Matches: 186, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
155 24 0.13
156 75 0.40
157 59 0.32
158 26 0.14
159 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACC
AACCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGAGGGGGATCAGGCCGATCCCCAG
CTTACGCATTATGCCTTCCGACCAGCTA
Found at i:14194217 original size:26 final size:25
Alignment explanation
Indices: 14194188--14194239 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14194178 GTTGGCTTAG
14194188 GCATATGAAGTTCATTCCATGTCTAA
1 GCATATGAAGTTCATTCCA-GTCTAA
*
14194214 GCATATGGAGTTCATTCCAGTCTAA
1 GCATATGAAGTTCATTCCAGTCTAA
14194239 G
1 G
14194240 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
GCATATGAAGTTCATTCCAGTCTAA
Found at i:14194729 original size:26 final size:26
Alignment explanation
Indices: 14194700--14194752 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14194690 GTTGGCTTAC
14194700 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
14194726 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
14194752 G
1 G
14194753 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:14194933 original size:26 final size:26
Alignment explanation
Indices: 14194897--14194949 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14194887 GTTGACTTAG
* *
14194897 GCATGCAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
14194923 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
14194949 G
1 G
14194950 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:14195352 original size:26 final size:26
Alignment explanation
Indices: 14195316--14195368 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14195306 CACGCAGGGG
* *
14195316 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14195342 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14195368 G
1 G
14195369 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14195632 original size:159 final size:158
Alignment explanation
Indices: 14195393--14195686 Score: 403
Period size: 159 Copynumber: 1.9 Consensus size: 158
14195383 ATGGTTGCGA
* * **
14195393 TAGCAGGATCGATAACACACAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCG
1 TAGCAGGACCGACAACACACAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCAACCTCTCCG
* * * **
14195458 ATCGGTTGGGTGCCCGCACGCCCGTTTCATGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTA
66 ATCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTA
14195523 TAAGCCCCAGTCGGACCGAGGGTAGTGG
131 TAAGCCCCAGTCGGACCGAGGGTAGTGG
* * *
14195551 TAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCC-AGCTTGCGCATTCAACCTCTC
1 TAGCAGGACCGACAACACACAG-GGGGGACCGGGCCGATCCCCGA-CTTACGCATTCAACCTCTC
* * *
14195615 CGCTC-GTCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
64 CGATCGGT-TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
*
14195679 GTCTAAGC
128 GTATAAGC
14195687 ATACAGAGTT
Statistics
Matches: 117, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
158 21 0.18
159 96 0.82
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
TAGCAGGACCGACAACACACAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCAACCTCTCCG
ATCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTA
TAAGCCCCAGTCGGACCGAGGGTAGTGG
Found at i:14195797 original size:11 final size:11
Alignment explanation
Indices: 14195781--14195813 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
14195771 CCCGGGGCAC
14195781 CATCGTCGGAG
1 CATCGTCGGAG
14195792 CATCGTCGGAG
1 CATCGTCGGAG
14195803 CATCGTCGGAG
1 CATCGTCGGAG
14195814 AGCCTAACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14196445 original size:26 final size:26
Alignment explanation
Indices: 14196393--14196445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14196383 GTTGACTTAG
*
14196393 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
14196419 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
14196445 G
1 G
14196446 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:14196779 original size:158 final size:158
Alignment explanation
Indices: 14196426--14196811 Score: 388
Period size: 159 Copynumber: 2.4 Consensus size: 158
14196416 TAAGCATACG
* *
14196426 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
* * * * * * * ** *
14196491 GGGGGGACCGGGTCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCACCCGTACG
66 GGGGGGACCGAGTCCAATCCCCGGCTTGCACATTATGCCTCTCCGACCGCTAAAG-ACCCGCACG
* * * **
14196556 CCTGTTTCGTGGGTTGGCTTAGGCATAGG
130 CCTATTTCGTGGGTTGACTTAGGCACACA
** ** * * * * *
14196585 GAGTTCATT-CCATGTCT-AAGCCCCAGCTGGACCGAGGGTTGTGGCAACGGGA-CTGACAGCAC
1 GAGTTCATTCCCA-GTCTAAAATCGGATC-GGATCGAGGGTTGTGACAGCAGGATC-GACAGCAC
* * *
14196647 GCAGAGGGGGACTGAG-CCAATCCCCGGTTTGCACATTATGCCTCTCCGACTGCTCAAAG-CCCG
63 GCAG-GGGGGACCGAGTCCAATCCCCGGCTTGCACATTATGCCTCTCCGACCGCT-AAAGACCCG
*
14196710 CATG-CTCATTTCGTGGGTTGACTTAGGCACACA
126 CACGCCT-ATTTCGTGGGTTGACTTAGGCACACA
*
14196743 GAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTATGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
14196808 GGGG
66 GGGG
14196812 ACACCAGGTC
Statistics
Matches: 178, Mismatches: 40, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
157 5 0.03
158 79 0.44
159 83 0.47
160 11 0.06
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
GGGGGGACCGAGTCCAATCCCCGGCTTGCACATTATGCCTCTCCGACCGCTAAAGACCCGCACGC
CTATTTCGTGGGTTGACTTAGGCACACA
Found at i:14196880 original size:158 final size:155
Alignment explanation
Indices: 14196419--14196908 Score: 441
Period size: 158 Copynumber: 3.1 Consensus size: 155
14196409 CCTAGTTTAA
* *
14196419 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGACA
* * * * * * *
14196484 GCACGCAGGGGGGACCGGGTCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCAC
65 GCACGCAGGGGGGACCAGGTCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGA-CAGCTGAGCGC
*
14196549 CCGTACGC-CTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTC-GTTTCGTGGGTT-GCTTAG
* ** ** * * * * *
14196578 GCATAGGGAGTTCATT-CCATGTCT-AAGCCCCAGCTGGACCGAGGGTTGTGGCAACGGGA-CTG
1 GCATA-CGAGTTCATTCCCA-GTCTAAAATCGGATC-GGATCGAGGGTTGTGACAGCAGGATC-G
* * * * * * * * *
14196640 ACAGCACGCAGAGGGGGA-CTGAGCCAATCCCCGGTTTGCACATTATGCCTCTCCGACTGCTCAA
62 ACAGCACGCAG-GGGGGACCAG-GTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGACAGCTGAG
* * *
14196704 AGCCCGCATGCTCATTTCGTGGGTTGACTTAG
125 CGCCCGCACGCTCGTTTCGTGGGTTG-CTTAG
* *
14196736 GCACACAGAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTATGACAGCAGGATCGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGACA
** * * *
14196801 GCACGCAGGGGACACCAGGTCAGTCCCCGACTTACGCATTCTGCCTCTCCAACAAGCTGAGCGCC
65 GCACGCAGGGGGGACCAGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGAC-AGCTGAGCGCC
* *
14196866 GGCACACTCGTTTCGTGGGTTGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGCTTAG
14196893 GCATACGAAGTTCATT
1 GCATACG-AGTTCATT
14196909 TCATGTCTAA
Statistics
Matches: 254, Mismatches: 62, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
156 1 0.00
157 50 0.20
158 110 0.43
159 85 0.33
160 8 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGACAG
CACGCAGGGGGGACCAGGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGACAGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGCTTAG
Found at i:14196942 original size:26 final size:26
Alignment explanation
Indices: 14196893--14196945 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14196883 GGTTGCTTAG
*
14196893 GCATACGAAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
14196919 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
14196945 G
1 G
14196946 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14197475 original size:26 final size:26
Alignment explanation
Indices: 14197445--14197497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14197435 GTTGACTTAG
*
14197445 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14197471 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14197497 G
1 G
14197498 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14197573 original size:184 final size:184
Alignment explanation
Indices: 14197226--14197656 Score: 468
Period size: 184 Copynumber: 2.3 Consensus size: 184
14197216 TCAGCCGGTC
* * * * **
14197226 GAGCACCCGTACGCTCGTTTCATGTGTTGACTTAGGCATACGGAGCTCATCCTTAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * ***
14197291 ACGGAGTTTATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTACCAGGATCGGTAGCAC
66 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTACCAGGATCAACAGCAC
* * * *
14197356 ATGGAGGGGATCGGGCCGATCCTCAGGTTGCACATTCTGCTTCTCC-AGTCGGTT
131 ATGGAGGGGATCGGGCCAATCCTCAGGTTGCACATTCTGCCTCTCCGA-CCGGCT
* *
14197410 GAGTGCCCGCTCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
** *
14197475 ACGAAGTTCATTCCCAGTCTAAGATC-GAACTGGATCTAGGGTTGC-G-ACAGCAGGATCAACAG
66 ACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCAGTAC--CAGGATCAACAG
* *
14197537 CACGCA-GG-GGGGA-CTGGGCCAATCC-CTGGCTTGCACATTCTGCCTCTCCGACCTGCT
128 CA--CATGGAGGGGATC-GGGCCAATCCTCAGG-TTGCACATTCTGCCTCTCCGACCGGCT
* * * *
14197594 GAGCGTCCGCACGC-CGATTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGC
1 GAGCGCCCGCACGCTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
14197657 CCTAGTCGGA
Statistics
Matches: 209, Mismatches: 28, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
182 2 0.01
183 11 0.05
184 191 0.91
185 3 0.01
186 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTACCAGGATCAACAGCAC
ATGGAGGGGATCGGGCCAATCCTCAGGTTGCACATTCTGCCTCTCCGACCGGCT
Found at i:14197775 original size:159 final size:158
Alignment explanation
Indices: 14197479--14197814 Score: 417
Period size: 159 Copynumber: 2.1 Consensus size: 158
14197469 AAGCATACGA
** * * * *
14197479 AGTTCATTCCCAGTCTAAGATCGA-ACTGGATCTAGGGTTGCGACAGCAGGATCAACAGCACGCA
1 AGTTCATTCCCAGTCTAAGCCCTAGTC-GGACCTAGGGTTGCGACAGCAGGACCAACAGCACGCA
* ** * * **
14197543 GGGGGGACTGGGCCAATCCCTGGCTTGCACATTCTGCCTCTCCGACCTGCTGAGCGTCCGCACGC
65 GGGGGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAGCACCCGCACGC
14197608 CGATTTCATGGGTTGGCTTAGGCATAAGG
130 CGATTTCATGGGTTGGCTTAGGCATAAGG
* * *
14197637 AGTTCATT-CCATGTCTAAGCCCTAGTCGGACCTAGGGTTGTGGCAGCAGGACCGACAGCACGCA
1 AGTTCATTCCCA-GTCTAAGCCCTAGTCGGACCTAGGGTTGCGACAGCAGGACCAACAGCACGCA
* * * * *
14197701 GTGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGATCGGCTGAGCACCCGCACG
65 G-GGGGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAGCACCCGCACG
*
14197766 CTCGA-TTCATGGGTTGGCTTAGGCATACGG
129 C-CGATTTCATGGGTTGGCTTAGGCATAAGG
14197796 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
14197815 AGTTTAAGCC
Statistics
Matches: 151, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
157 3 0.02
158 50 0.33
159 92 0.61
160 6 0.04
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGCCCTAGTCGGACCTAGGGTTGCGACAGCAGGACCAACAGCACGCAG
GGGGGACCGGGCCAATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCC
GATTTCATGGGTTGGCTTAGGCATAAGG
Found at i:14197950 original size:26 final size:26
Alignment explanation
Indices: 14197920--14197972 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14197910 GTTGGCGTAG
14197920 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
14197946 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14197972 G
1 G
14197973 ATCAAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14198143 original size:26 final size:26
Alignment explanation
Indices: 14198104--14198156 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14198094 GTTGGCTTAG
14198104 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
* *
14198130 GCATATGGATTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
14198156 G
1 G
14198157 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:14198513 original size:26 final size:26
Alignment explanation
Indices: 14198484--14198536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14198474 GTTGACTTAG
*
14198484 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14198510 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14198536 G
1 G
14198537 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14199021 original size:26 final size:26
Alignment explanation
Indices: 14198985--14199037 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14198975 GTTGGCTTAG
*
14198985 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
14199011 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
14199037 G
1 G
14199038 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:14199226 original size:26 final size:26
Alignment explanation
Indices: 14199196--14199248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14199186 ATTGACTTAG
14199196 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14199222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14199248 G
1 G
14199249 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14199526 original size:159 final size:158
Alignment explanation
Indices: 14199222--14199566 Score: 496
Period size: 159 Copynumber: 2.2 Consensus size: 158
14199212 CCCAGTCTAA
** * ** *
14199222 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGATCGAGGGTTGTGACAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAGTTGGACCGAGGGTTGTGACAGCAGGATCAAC
* * *
14199286 AGCACGCAGGGGGGATCAGGTCGATCCCTGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGACCAGGCCGATCCCCGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCGC
*
14199351 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCGATTCGTGGGTTGGCTTAG
* *
14199380 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTTGGACCGAGGGTTGT-AGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGTTGGACCGAGGGTTGTGA-CAGCAGGATCAAC
* ***
14199444 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCG
*
14199509 CCCGCACGCTCGATTCGTGGGTTGGCTTAG
129 CCCGCACGCCCGATTCGTGGGTTGGCTTAG
14199539 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
14199567 ATACGGAGTT
Statistics
Matches: 166, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
157 4 0.02
158 59 0.36
159 103 0.62
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGTTGGACCGAGGGTTGTGACAGCAGGATCAACA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCCCGATTCGTGGGTTGGCTTAG
Found at i:14199575 original size:26 final size:26
Alignment explanation
Indices: 14199539--14199591 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14199529 GTTGGCTTAG
14199539 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
14199565 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
14199591 G
1 G
14199592 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:14200636 original size:159 final size:158
Alignment explanation
Indices: 14200338--14200767 Score: 378
Period size: 159 Copynumber: 2.7 Consensus size: 158
14200328 GGGTTACGGT
* * * * *
14200338 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCAC
* * * * * * *
14200403 TCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCAAGTCTAAGCCCTAGCCG
66 CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCAAGCCTAAGACCGAGCCG
14200468 AATCGAGGGTTGTGGCTGCGGGACCGGC
131 AATCGAGGGTTGTGGCTGCGGGACCGGC
*
14200496 AGCATGCAGAGGGGGATCGGG-CAGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGC
1 AGCACGCAG-GGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGC
* * * * * * * *
14200560 ACCCGTACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTATGATCGGGC
64 ACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCAAGCCTAAGACCGAGC
* ** ** ** ** **
14200625 CAGACT-GAGGGTTGCAGCCACAAGATTGAT
129 C-GAATCGAGGGTTGTGGCTGCGGGACCGGC
* ** * * * * * * * *
14200655 AGCACGTAGGGGGGATCAAGCCGGTCCCCAGCTTGCGCATTCTGTCTCTCCGGTCGGCTGAGCAC
1 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCAC
* * * * * *
14200720 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCA
66 CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCA
14200768 TGTCTAAGCA
Statistics
Matches: 218, Mismatches: 50, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
158 95 0.44
159 120 0.55
160 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGCAC
CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCAAGCCTAAGACCGAGCCG
AATCGAGGGTTGTGGCTGCGGGACCGGC
Found at i:14200786 original size:26 final size:26
Alignment explanation
Indices: 14200749--14200827 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14200739 GTTGGCTTAG
*
14200749 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14200775 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
**
14200801 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14200827 G
1 G
14200828 AGTTTGAGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14201535 original size:26 final size:26
Alignment explanation
Indices: 14201499--14201551 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14201489 GTTAACTTAG
*
14201499 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14201525 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14201551 G
1 G
14201552 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14202164 original size:184 final size:184
Alignment explanation
Indices: 14201828--14202205 Score: 537
Period size: 184 Copynumber: 2.1 Consensus size: 184
14201818 CTTGTGCATT
* * * *
14201828 ATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAG
1 ATGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAG
*
14201893 GATCGATGGCACGCAGGGGGAACTGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
66 GATCGATAGCACGCAGGGGGAACTGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
* *
14201958 TGAGCAACCACATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCC
131 TGAGCAACCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-TCC
* * *
14202013 A-GTTTAAGCGTATGGAGTTCATTCTCAGTCTAAGATCTA-ACCGGATCGAGGGTTGCAGTAGCA
1 ATGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGAGGGTTGCAGCAGCA
* * * * *
14202076 GGATTGGTAGCACGCAGGGGGGA-TCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTTCGATCG
65 GGATCGATAGCACGCAGGGGGAACT-GGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCG
* ** *
14202140 GCTGAGCACCCGTACGCCCGTTTCGTGGGTTGACTTAGGCATAGAGAGTTCATTCC
129 GCTGAGCAACCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
14202196 ATGTCTAAGC
1 ATGTCTAAGC
14202206 CCCAGTCGGA
Statistics
Matches: 170, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
183 5 0.03
184 163 0.96
185 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (184 bp):
ATGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAG
GATCGATAGCACGCAGGGGGAACTGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
TGAGCAACCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
Done.