Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 106 of 402
Found at i:14202528 original size:26 final size:26
Alignment explanation
Indices: 14202492--14202544 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202482 GTTGGCTTAG
* *
14202492 GCATATGGAGTTTA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
14202518 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
14202544 G
1 G
14202545 ATTCGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:14202902 original size:26 final size:26
Alignment explanation
Indices: 14202872--14202924 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202862 GTTGACTTAG
14202872 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14202898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14202924 G
1 G
14202925 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14203355 original size:157 final size:158
Alignment explanation
Indices: 14202898--14203397 Score: 562
Period size: 157 Copynumber: 3.2 Consensus size: 158
14202888 CCTAGTCTAA
* *
14202898 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCGAGGGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGAC
* * * * *
14202962 AGCACGCAGGGGGGACCAGG-CGGTCCCCGGCTTGCGCATTCTGTCTCTCCGGACGGCTGAGTGC
65 AGCACGCAGGGGGGATCGGGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
* * * *
14203026 CCGCACACCCATTTTGTGGGTTGGCTTAG
130 CCGCACGCACGTTTCGTGGGTTGGCTTAG
* ** * * * * *
14203055 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGATCGAGGGTTGCGGTAGCAGGATC-GA
* * * * * * * *
14203118 CAGCACGCAGAAGAGGATCGGTCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGC
64 CAGCACGCAG-GGGGGATCGGGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGC
* * *
14203183 GCCCGAACGCACGTTTCATGGGTTGACTTAG
128 GCCCGCACGCACGTTTCGTGGGTTGGCTTAG
*
14203214 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-TGGATTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
14203277 AGTACGCAGGGGGGATCGGGCCGGTCCTCAGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCAC
65 AGCACGCAGGGGGGATCGGGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
* *
14203342 CCGCACGCTCGTTTCGTGGGTTGGCTTAA
130 CCGCACGCACGTTTCGTGGGTTGGCTTAG
14203371 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14203398 CATACAAAGT
Statistics
Matches: 277, Mismatches: 57, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 7 0.03
157 145 0.52
158 40 0.14
159 82 0.30
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCC
CGCACGCACGTTTCGTGGGTTGGCTTAG
Found at i:14203408 original size:26 final size:26
Alignment explanation
Indices: 14203368--14203423 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14203358 TGGGTTGGCT
**
14203368 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACAAAGTTCATTCCTA-GTC
14203394 TAAGCATACAAAGTTCATTCCTAGTC
1 TAAGCATACAAAGTTCATTCCTAGTC
14203420 TAAG
1 TAAG
14203424 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCTAGTC
Found at i:14203951 original size:26 final size:26
Alignment explanation
Indices: 14203914--14203966 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14203904 GTCGACTTAG
*
14203914 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
14203940 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14203966 G
1 G
14203967 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14204494 original size:305 final size:305
Alignment explanation
Indices: 14203940--14204513 Score: 722
Period size: 305 Copynumber: 1.9 Consensus size: 305
14203930 CCTAGTCTAA
* * * * * *
14203940 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACACCAGGATCGGCG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACACCAGGATCGACA
** * * *
14204005 GCTTGCAGGGGGGACCGGGCCGATCCTCAGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCGCC
* * * * *
14204070 CGCACGCCTGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAACCCCAGCCAG
* * * * * * * * *
14204135 ACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGTGGACCGGGCCGATCCTCGTCTTGCG
196 ACCGAAGATTGTGGCAGCAGGACCGACAGCACGAAGAGGGGGACCGGCCCGATCCCCGACTTACG
14204200 CATTATGCCTCTACGGTCGGCTCAGCACCCGAATGCTCGACTTAG
261 CATTATGCCTCTACGGTCGGCTCAGCACCCGAATGCTCGACTTAG
* * ** *
14204245 GCATACGGAGTTCATTCCCAGTCTATGATCAGACCAGA-CGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACACCAGGATCGACA
* * *
14204309 GCACGCAAGGGGGGATCGGGCCGATCCCC-GACTTGCGCATTCTACCTCTTCGGCCGACTGAGCG
66 GCACGC-AGGGGGGACCGGGCCGATCCCCAG-CTTGCACATTCTACCTCTCCGGCCGACTGAGCG
*
14204373 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAACCCCAG-C
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAACCCCAGCC
* ** * * **
14204437 TGAACCGAAGATTGTGGCAGTGGGACCGGCAGCACGAAGGGGGGGATTGGCCCGATCCCCGACTT
194 AG-ACCGAAGATTGTGGCAGCAGGACCGACAGCACGAAGAGGGGGACCGGCCCGATCCCCGACTT
*
14204502 ACGCATTCTGCC
258 ACGCATTATGCC
14204514 ACCCTGGTCG
Statistics
Matches: 224, Mismatches: 42, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
304 27 0.12
305 197 0.88
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.20
Consensus pattern (305 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACACCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAACCCCAGCCAG
ACCGAAGATTGTGGCAGCAGGACCGACAGCACGAAGAGGGGGACCGGCCCGATCCCCGACTTACG
CATTATGCCTCTACGGTCGGCTCAGCACCCGAATGCTCGACTTAG
Found at i:14204612 original size:26 final size:26
Alignment explanation
Indices: 14204576--14204626 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14204566 TTGACTTAGG
14204576 CATACGGAGTTCATCCCCAATCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
* *
14204602 CATAGGGAGTTCTTCCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
14204627 GTTTAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:14204955 original size:26 final size:26
Alignment explanation
Indices: 14204917--14204969 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14204907 GTTGGCTTAG
* * *
14204917 GCATACGGCGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
*
14204943 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
14204969 G
1 G
14204970 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAGGTCTAA
Found at i:14206729 original size:26 final size:26
Alignment explanation
Indices: 14206680--14206729 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14206670 GTTAGCTTAG
**
14206680 GCATACGGAGTTCATTCCTTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
14206706 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
14206730 TAGAGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:14207617 original size:26 final size:26
Alignment explanation
Indices: 14207588--14207640 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14207578 GTTGACTTAG
14207588 GCATACGGA-GTTCATCCCCAATCTAA
1 GCATAC-GATGTTCATCCCCAATCTAA
* *
14207614 GCATACGATGTTCATTCCCAGTCTAA
1 GCATACGATGTTCATCCCCAATCTAA
14207640 G
1 G
14207641 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGATGTTCATCCCCAATCTAA
Found at i:14208162 original size:26 final size:26
Alignment explanation
Indices: 14208113--14208165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14208103 GTTGGCTTCG
* *
14208113 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
14208139 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
14208165 G
1 G
14208166 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14209063 original size:59 final size:58
Alignment explanation
Indices: 14208953--14209085 Score: 205
Period size: 58 Copynumber: 2.3 Consensus size: 58
14208943 TTATGCAGGA
* * * *
14208953 AAAATTGATACTTTCAACTTTTCCTCAAAATTGATTTTTTTGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATGATTTTTTGGAAATTTATTTTCAAGG
14209011 AAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATGATTTTTTGGAAA--TTTATTTTCAAGG
14209070 AAAATTGATACTTTCA
1 AAAATTGATACTTTCA
14209086 NNNNNNNNNN
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
57 11 0.16
58 30 0.43
59 28 0.41
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATGATTTTTTGGAAATTTATTTTCAAGG
Found at i:14210300 original size:11 final size:11
Alignment explanation
Indices: 14210279--14210310 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14210269 CGGTTAGGCT
14210279 CTCCG-CGATG
1 CTCCGACGATG
14210289 CTCCGACGATG
1 CTCCGACGATG
14210300 CTCCGACGATG
1 CTCCGACGATG
14210311 GTGCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.16, C:0.38, G:0.28, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14211450 original size:26 final size:26
Alignment explanation
Indices: 14211409--14211461 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14211399 CCGATCCGAT
14211409 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14211435 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
14211461 C
1 C
14211462 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14212393 original size:26 final size:26
Alignment explanation
Indices: 14212356--14212406 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14212346 TGATCTAAAC
*
14212356 TTAGATTGGGGATGAACTCCCTATGG
1 TTAGATTAGGGATGAACTCCCTATGG
*
14212382 TTAGATTAGGGATGAACTCCGTATG
1 TTAGATTAGGGATGAACTCCCTATG
14212407 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGATTAGGGATGAACTCCCTATGG
Found at i:14213600 original size:26 final size:26
Alignment explanation
Indices: 14213562--14213617 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14213552 CCGGTCCGAT
**
14213562 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14213588 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14213614 CTTA
1 CTTA
14213618 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14214091 original size:26 final size:26
Alignment explanation
Indices: 14214062--14214114 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14214052 CCGGTCTGAT
14214062 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14214088 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14214114 C
1 C
14214115 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14214470 original size:26 final size:26
Alignment explanation
Indices: 14214441--14214493 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14214431 CCGGTCGAAT
* *
14214441 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATAAACTCCATATG
14214467 CTTAGACATGGAATAAACTCCATATG
1 CTTAGACATGGAATAAACTCCATATG
14214493 C
1 C
14214494 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:14214788 original size:159 final size:158
Alignment explanation
Indices: 14214466--14214929 Score: 425
Period size: 159 Copynumber: 2.9 Consensus size: 158
14214456 AACTCCGTAT
* * * * ** * * * *
14214466 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAA
* * * * * * *
14214531 CCGACCG-AGAGGCAAAATGCACAAGCCGAGGATCGACCTGGTCCCACCCTGCGTGCTGTCGATC
66 CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCC-CCCTACGTGCCGTCGATC
** ** * *
14214595 CTACTACTGCAACCCTC-ACTCCAGTCT-GA
130 CCGCTACCACAACCCTCGA-TCC-GACTGGG
* * * *
14214624 TCTTAGAC-TAGAAATGAACTCCGTATGCCTATGTTAACCCACGAAACAAGCGTGCAGGTGC-CA
1 GCTTAGACAT-GAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTC-
* * * * *
14214687 AACCGACCGTAGAGGCATAATGTGCAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCCGTCGG
64 AACCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTACGTGCCGTCGA
14214752 TCCCGCTACCACAACCCTCGATCCGACTGGG
128 TCCCGCTACCACAACCCTCGATCCGACTGGG
* ** * *
14214783 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAA
* * * * * *
14214848 CCGATCGAAAAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCCGTCGATCC
* **
14214913 TGCTACTGCAACCCTCG
131 CGCTACCACAACCCTCG
14214930 GTCCAGTTAG
Statistics
Matches: 248, Mismatches: 50, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 88 0.35
159 155 0.62
160 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGAAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTCAA
CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCCGTCGATCC
CGCTACCACAACCCTCGATCCGACTGGG
Found at i:14215110 original size:184 final size:184
Alignment explanation
Indices: 14214785--14215144 Score: 548
Period size: 184 Copynumber: 2.0 Consensus size: 184
14214775 CGACTGGGGC
* *
14214785 TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
*
14214850 GATCGAAAAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTG
66 GATCGAAAAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTG
* *
14214915 CTACTGCAACCCTCGGTCC-AGT-TAGATCTTAGACTGAGAATGAACTCTGTACGT
131 CTACCGCAACCCTCGATCCGA-TCT-GATCTTAGACTGAGAATGAACTCTGTACGT
** *
14214969 TTAGAC-TGGAGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGTGCTCAGC
1 TTAGACATGGA-ATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGC
* * *
14215033 CGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCC-AGTCCCCCTTGCGTGCTATCGATCC
65 CGATCGAAAAGGCAGAATGCGTAAGCTGGGGATCGACCCGA-TCCCCCCTGCGTGCTATCGATCC
*
14215097 TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT
129 TGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACT
14215145 TCGTATGCTT
Statistics
Matches: 160, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
183 5 0.03
184 153 0.96
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
GATCGAAAAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTG
CTACCGCAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCTGTACGT
Found at i:14215465 original size:26 final size:26
Alignment explanation
Indices: 14215436--14215488 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14215426 CCGGTCTGAT
14215436 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14215462 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14215488 C
1 C
14215489 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14216181 original size:26 final size:26
Alignment explanation
Indices: 14216143--14216195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14216133 GGCTCAAACT
*
14216143 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
14216169 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14216195 C
1 C
14216196 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14216676 original size:26 final size:26
Alignment explanation
Indices: 14216632--14216682 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14216622 CTGGTCTGAT
*
14216632 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14216658 CTTAGACTGAGG-ATAAACTCCGTAT
1 CTTAGACTG-GGAATAAACTCCGTAT
14216683 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14217391 original size:26 final size:26
Alignment explanation
Indices: 14217353--14217405 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14217343 GGCTCAAACT
*
14217353 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14217379 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14217405 C
1 C
14217406 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14217732 original size:26 final size:26
Alignment explanation
Indices: 14217696--14217748 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14217686 CCAATTCGAT
14217696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14217722 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14217748 C
1 C
14217749 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14217936 original size:26 final size:26
Alignment explanation
Indices: 14217907--14217959 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14217897 CCGGTCTGAT
*
14217907 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
14217933 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
14217959 C
1 C
14217960 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14218443 original size:26 final size:26
Alignment explanation
Indices: 14218407--14218459 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14218397 CCAATCCGAT
14218407 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
14218433 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
14218459 C
1 C
14218460 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:14218825 original size:26 final size:26
Alignment explanation
Indices: 14218787--14218839 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14218777 CCGGTCTGAT
14218787 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
14218813 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAAATCCATATG
14218839 C
1 C
14218840 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:14219475 original size:26 final size:26
Alignment explanation
Indices: 14219446--14219498 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14219436 CCGGTTCGAT
14219446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14219472 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14219498 C
1 C
14219499 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14219602 original size:184 final size:183
Alignment explanation
Indices: 14219287--14219740 Score: 474
Period size: 184 Copynumber: 2.5 Consensus size: 183
14219277 TCCGACTAGG
* * * * * *
14219287 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * * * ***
14219352 CAGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCTGTGTGTTGTTGATCC
65 CAGCTCGGAGAGGCAGAATGCGCAACCCAGAGATCGGCCCAATCCCCCCTGTGTGCTACCGATCC
* *
14219417 TGCTGT-C-GCAACCCTAGATCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTAT
130 TG--GTACTGCAACCCTAGATCCGGTCT-GATCTTAGACTGGAAATAAACTCCGTAT
14219471 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-AGCGGGCACTCA
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA-CGGGCACTCA
* * *
14219535 ACCGACT-GGAGAGGCAGAATGTGCAACCC-GAATATCGGCCCAATCCCTCCC-GTGTGCTACCG
64 ACAG-CTCGGAGAGGCAGAATGCGCAACCCAG-AGATCGGCCCAATCCC-CCCTGTGTGCTACCG
* * * *
14219597 ATCCTGGTACTGCAACCCTCGGTCTGGTCTGATCTTAGGCTGGAAATAAACTCCGTAT
126 ATCCTGGTACTGCAACCCTAGATCCGGTCTGATCTTAGACTGGAAATAAACTCCGTAT
* * * * *
14219655 GCTTAGACTAGGGATGAGCTCCGTATGCCTAAGTTAACACACGAAACGAGCGTACAGGCGCTCAG
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCA-
* * *
14219720 TCAG-TCGGAAAGGCATAATGC
64 ACAGCTCGGAGAGGCAGAATGC
14219741 ACAAGTCGAG
Statistics
Matches: 225, Mismatches: 34, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
182 2 0.01
183 5 0.02
184 210 0.93
185 8 0.04
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (183 bp):
GCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAAC
AGCTCGGAGAGGCAGAATGCGCAACCCAGAGATCGGCCCAATCCCCCCTGTGTGCTACCGATCCT
GGTACTGCAACCCTAGATCCGGTCTGATCTTAGACTGGAAATAAACTCCGTAT
Found at i:14219767 original size:184 final size:185
Alignment explanation
Indices: 14219443--14219777 Score: 415
Period size: 184 Copynumber: 1.8 Consensus size: 185
14219433 GATCCGGTTC
* * *
14219443 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGAAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
* * * * ** * **
14219508 CCCACGAAACGAGCGAGCGGGCACTCAACCGACTGGAGAGGCAGAATGTGCAACCCGAATATCGG
66 CACACGAAACGAGCGAGCAGGCACTCAACAGACTGGAAAGGCAGAATGCACAACCCGAAGATCAA
14219573 CCCAATCCCTC-CCGTGTGCTACCGATCCTGGTACTGCAACCCTCGGTCTGGTCT
131 CCCAATCCCTCTCCGTGTGCTACCGATCCTGGTACTGCAACCCTCGGTCTGGTCT
* * *
14219627 GATCTTAGGCTGGAAATAAACTCCGTATGCTTAGACTAGGGATGAGCTCCGTATGCCTAAGTTAA
1 GATCTTAGACTGGAAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
* * * * ** *
14219692 CACACGAAACGAGCGTA-CAGGCGCTCAGTCAGTC-GGAAAGGCATAATGCACAAGTCGAGGATC
66 CACACGAAACGAGCG-AGCAGGCACTCA-ACAGACTGGAAAGGCAGAATGCACAACCCGAAGATC
* *
14219755 AACCCGATCCCTCTCTGTGTGCT
129 AACCCAATCCCTCTCCGTGTGCT
14219778 GTCGATCCCG
Statistics
Matches: 124, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
184 112 0.90
185 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (185 bp):
GATCTTAGACTGGAAATAAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
CACACGAAACGAGCGAGCAGGCACTCAACAGACTGGAAAGGCAGAATGCACAACCCGAAGATCAA
CCCAATCCCTCTCCGTGTGCTACCGATCCTGGTACTGCAACCCTCGGTCTGGTCT
Found at i:14219950 original size:171 final size:171
Alignment explanation
Indices: 14219655--14220022 Score: 416
Period size: 171 Copynumber: 2.2 Consensus size: 171
14219645 AACTCCGTAT
* * * **
14219655 GCTTAGACTAGGGATGAGCTCCGTATGCCTAAGTTAACACACGAAACGAGCGTACAGGCGCTCAG
1 GCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACACACGAAACGAGCGTACAGGCGCTCAG
* * * * * * *
14219720 TCAGTCGGAAAGGCATAATGCACAAGTCGAGGATCAACCCGATCCCTCTCTGTGTGCTGTCGATC
66 TCAGTCAGAAACGCAGAATGCACAAGCCGAGGATCAACCCGATCCCCCCCTGCGTGCTGTCGATC
14219785 CCGCTACCGGTCCTGCTACCACAACCCTTGGTCCGACTGGG
131 CCGCTACCGGTCCTGCTACCACAACCCTTGGTCCGACTGGG
* * *
14219826 GCTTAGAC-ATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATACCTAAGCCAACACACGAAACGAGCGTACAGGCGCTCA
* * * * *
14219890 GTCGGTCAGAGACGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCCTGCGTGCTGTCGAT
65 GTCAGTCAGAAACGCAGAATGCACAAGCCGAGGATCAACCCGATCCCCCCCTGCGTGCTGTCGAT
* * * *** * * *
14219955 CCTGTTACTGGTCCTGCTATTGCAACCCTCGGTCCGGTCT-GA
130 CCCGCTACCGGTCCTGCTACCACAACCCTTGGTCC-GACTGGG
* * *
14219997 TCTTAGATTGGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
14220023 GCTTAGACAT
Statistics
Matches: 162, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
170 1 0.01
171 158 0.98
172 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (171 bp):
GCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACACACGAAACGAGCGTACAGGCGCTCAG
TCAGTCAGAAACGCAGAATGCACAAGCCGAGGATCAACCCGATCCCCCCCTGCGTGCTGTCGATC
CCGCTACCGGTCCTGCTACCACAACCCTTGGTCCGACTGGG
Found at i:14220455 original size:158 final size:158
Alignment explanation
Indices: 14220023--14220523 Score: 457
Period size: 158 Copynumber: 3.2 Consensus size: 158
14220013 AACTCCGTAT
* * * *
14220023 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCAACCCACGAAAC-GAGTGCGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACAGAGCGTGCGGG-GCTCAA
** * ** * ** *
14220087 CTTGTCGGAGAGGCAGAATGCATAAGTCGGGGA-CTGACCCGGTGTCCCCTGCATGCTGTCGATC
65 CCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATC-GGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
14220151 TTGCTGTCATAACCCTCGATCC-GATCCGA
129 CTGCTGTCACAACCCTCGGTCCAGATCCGA
* * * * *
14220180 TCTTAGAC-TGGGAATGAACTCTGTGTGCCTAAGTCAACCCACGAAA-TGAGCGTGC-GGGCTTT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACAGAGCGTGCGGGGC-TC
* * * * * * * *
14220242 GAGCAGTCAGAGAGGCATAATGTGCAAATTGGGGATTGGCTCGGTCCCCCTCTGCGTGCTGTC-A
63 AACCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGA
* * * * *
14220306 GTCCCGCTGCCACAACCCTCGGTCCAGCT-GGG
127 -TCCTGCTGTCACAACCCTCGGTCCAGATCCGA
*
14220338 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACAGAGCGTGCGGG-GCTCA
* * * *
14220402 ACCGGTCAGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
64 ACCAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
*
14220467 CTGCTGTCGCAACCCTCGGTCCA-ATCCGA
129 CTGCTGTCACAACCCTCGGTCCAGATCCGA
* *
14220496 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14220524 TTAAACTAGG
Statistics
Matches: 268, Mismatches: 61, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 65 0.24
158 151 0.56
159 47 0.18
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACAGAGCGTGCGGGGCTCAAC
CAGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGTCACAACCCTCGGTCCAGATCCGA
Found at i:14221602 original size:26 final size:26
Alignment explanation
Indices: 14221551--14221603 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14221541 CTGGTTCGAT
* *
14221551 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCATATG
*
14221577 CTTAGACTGGGGATAAAC-TCTATATG
1 CTTAGACTGGGAATAAACTTC-ATATG
14221603 C
1 C
14221604 CCCCTGCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCATATG
Found at i:14221892 original size:419 final size:419
Alignment explanation
Indices: 14221255--14222015 Score: 1028
Period size: 419 Copynumber: 1.8 Consensus size: 419
14221245 AATGAACTCC
*
14221255 GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGACGAGCGGAGAGGTTGAATGCG
1 GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGACGAGCGGAGAGGTTGAATGCA
* ** * * * *
14221320 CAAGCTGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTGCCGCTACCCTCGGTCT
66 CAAGCAGGGGATCCACCCGATCCCCCTCTACATGCTATCGGTCCCACTGCCGATACCCTCGGTCT
* * *
14221385 GGCTGGGGCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG
131 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGG
* * * ** * *
14221450 CACTCAACCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGTTG
196 CACACAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTA
* * * * *
14221515 CCGATCCTGCTATCGCAACCATCGGTCTGGTTCGATCTTAGAC-TGGGAATGAACTTCGTATGCT
261 CCGATCCTGCTATCGCAACCATCAGTCCGATCCGATCTTAG-CTTGGGAATGAACTCCGTATGCT
*
14221579 TAGACTGGGGATAAACTCTATATGCCCCCTGCGTGCTGTCGATCCTACTACCGTAACCCTCAGTC
325 TACACTGGGGATAAACTCTATATGCCCCCTGCGTGCTGTCGATCCTACTACCGTAACCCTCAGTC
14221644 CGGTCCGATCTTAGATTGGGAATGAATTTT
390 CGGTCCGATCTTAGATTGGGAATGAATTTT
* * * *
14221674 GTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAG-CTAGCTGGAGAGGTAT-AATG
1 GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGACGAGC-GGAGAGGT-TGAATG
* * * **
14221737 CATAAGCAGGGGATCCATCCGGTCCCCCTCTATGTGCTATCGGTCCCACTGCC-ATAACCCTCGG
64 CACAAGCAGGGGATCCACCCGATCCCCCTCTACATGCTATCGGTCCCACTGCCGAT-ACCCTCGG
14221801 T-TCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTA
128 TCT-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTA
* * * * ***
14221865 TGGGCACACAGCCTACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCTTGCCTGCAT
192 CGGGCACACAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCAT
* * * * *
14221930 GCTATCGATCTTGCTGTCGTAACCCTCAGTCCGATCCGATCTTAGCTTGGGAATGAACTCCGTAT
257 GCTACCGATCCTGCTATCGCAACCATCAGTCCGATCCGATCTTAGCTTGGGAATGAACTCCGTAT
*
14221995 GCTTACACTGGGGATGAACTC
322 GCTTACACTGGGGATAAACTC
14222016 CGCATGCCTA
Statistics
Matches: 291, Mismatches: 46, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
418 7 0.02
419 283 0.97
420 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (419 bp):
GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGACGAGCGGAGAGGTTGAATGCA
CAAGCAGGGGATCCACCCGATCCCCCTCTACATGCTATCGGTCCCACTGCCGATACCCTCGGTCT
GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGG
CACACAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTA
CCGATCCTGCTATCGCAACCATCAGTCCGATCCGATCTTAGCTTGGGAATGAACTCCGTATGCTT
ACACTGGGGATAAACTCTATATGCCCCCTGCGTGCTGTCGATCCTACTACCGTAACCCTCAGTCC
GGTCCGATCTTAGATTGGGAATGAATTTT
Found at i:14222206 original size:26 final size:26
Alignment explanation
Indices: 14222167--14222219 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14222157 CTGGTTCGAT
14222167 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14222193 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
14222219 C
1 C
14222220 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14222540 original size:159 final size:158
Alignment explanation
Indices: 14222192--14222554 Score: 403
Period size: 158 Copynumber: 2.3 Consensus size: 158
14222182 AACTCCGTAT
* ** *
14222192 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCATGAAC
* * *
14222257 TCGATCGAAAAGGTAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCTGCGTGCTATCGATCC
66 TCGACCGAAAAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCTGCATGCTATCGATCC
* * * *
14222322 TGCTACCGCAACCCTCGGTCCGGTCTGA
131 CGCTACCACAACCCTCAGTCCGGACTGA
* * * *
14222350 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCA-TGA
* * * * * * *
14222414 ACT-GGCCGGAGAGGCATAAT-CTGCAAGCTAGGGATCCG-TCTGGTCCCCCTCTGCATGCTGTC
64 ACTCGACCGAAAAGGCAGAATGC-GCAAGCTAGGGA-CCGACCCGGTCCCCC-CTGCATGCTATC
* *
14222476 GGTCCCGCTACCACAACCCTCAGTCC-GACTGGG
126 GATCCCGCTACCACAACCCTCAGTCCGGACT-GA
* *
14222509 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
14222555 TAGGCATATG
Statistics
Matches: 169, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 88 0.52
159 78 0.46
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCATGAAC
TCGACCGAAAAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCTGCATGCTATCGATCC
CGCTACCACAACCCTCAGTCCGGACTGA
Found at i:14222568 original size:159 final size:158
Alignment explanation
Indices: 14222192--14222623 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 158
14222182 AACTCCGTAT
* *
14222192 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCATTC-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCACTCAA
* * * * * *
14222256 GTCGATCGAAAAGGTAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCTGCGTGCTATCGATC
66 CT-GACCGGAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCTGCATGCTATCGATC
* * * *
14222321 CTGCTACCGCAACCCTCGGTCCGGTCTGA
130 CCGCTACCACAACCCTCAGTCCGGACTGA
* * * * *
14222350 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT-TCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTAT-GGGCACTC
* * * * *
14222413 AACTGGCCGGAGAGGCATAAT-CTGCAAGCTAGGGATCCG-TCTGGTCCCCCTCTGCATGCTGTC
64 AACTGACCGGAGAGGCAGAATGC-GCAAGCTAGGGA-CCGACCCGGTCCCCC-CTGCATGCTATC
* *
14222476 GGTCCCGCTACCACAACCCTCAGTCC-GACTGGG
126 GATCCCGCTACCACAACCCTCAGTCCGGACT-GA
* * *
14222509 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCATATGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTATGGGCACTCA
* * * *
14222573 GCTGACCGGAGAGGCAGAATGCACAAGCT-GGGTATCGGCCCGGTTCCCCCC
65 ACTGACCGGAGAGGCAGAATGCGCAAGCTAGGG-ACCGACCCGG-TCCCCCC
14222624 GTGTTCTGTC
Statistics
Matches: 221, Mismatches: 39, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
157 2 0.01
158 94 0.43
159 116 0.52
160 9 0.04
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCACTCAA
CTGACCGGAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCTGCATGCTATCGATCC
CGCTACCACAACCCTCAGTCCGGACTGA
Found at i:14222708 original size:25 final size:26
Alignment explanation
Indices: 14222680--14222731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14222670 CCAATCTAAT
14222680 CTTAGACA-GGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
14222705 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14222731 C
1 C
14222732 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14223193 original size:26 final size:26
Alignment explanation
Indices: 14223162--14223217 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14223152 CCGGACCGAT
* *
14223162 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACAGGGAATGAACTCCATATG
* *
14223188 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
14223214 CTTA
1 CTTA
14223218 AATCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:14224269 original size:26 final size:26
Alignment explanation
Indices: 14224227--14224278 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14224217 CAGTTTGATA
14224227 TTAGACTGGGAAGGAACTCCGTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
* *
14224253 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
14224279 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAAGGAACTCCGTATGC
Found at i:14224473 original size:26 final size:26
Alignment explanation
Indices: 14224422--14224474 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14224412 CCGGTCCGAT
**
14224422 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14224448 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14224474 C
1 C
14224475 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14225858 original size:159 final size:159
Alignment explanation
Indices: 14225569--14225872 Score: 375
Period size: 159 Copynumber: 1.9 Consensus size: 159
14225559 GGCTCAAACT
* *
14225569 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTTAGT
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGAGT
* * *
14225634 CGACCGGAGAGGCAGAATGCGTAAGTCAGGGACTGGCTCGATCCCCCTCTGCCTGCTACTGGTCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCGATCCCCCTCTGCCTGCTACTGGTCC
*
14225699 CACTGCGACAACCCTCGGTCCGACTGGGG
131 CACTGCCACAACCCTCGGTCCGACTGGGG
* * * **
14225728 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGTGCTGAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGAG
* * * * *
14225792 -CTGACCGGAGAGGC-GTAATGCGCAAGCCAGGGATTGGCCC-AGTCCCCTTTTGCGTGCT-GTC
65 TC-GACCGGAGAGGCAG-AATGCGCAAGCCAGGGACTGGCCCGA-TCCCCCTCTGCCTGCTACT-
*
14225853 GGTCCCGCTGCCACAACCCT
126 GGTCCCACTGCCACAACCCT
14225873 ATGCCTAAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
158 4 0.03
159 118 0.96
160 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGAGT
CGACCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCGATCCCCCTCTGCCTGCTACTGGTCC
CACTGCCACAACCCTCGGTCCGACTGGGG
Found at i:14226037 original size:26 final size:26
Alignment explanation
Indices: 14226008--14226060 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14225998 CCGATTCGAT
*
14226008 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
14226034 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
14226060 C
1 C
14226061 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:14226532 original size:26 final size:26
Alignment explanation
Indices: 14226494--14226545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14226484 GGCTCAAAAT
14226494 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14226520 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14226546 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14227309 original size:152 final size:154
Alignment explanation
Indices: 14227013--14227436 Score: 437
Period size: 152 Copynumber: 2.7 Consensus size: 154
14227003 AACTCCATAT
***
14227013 GCTTAGA-AATGGAATGAACTAGATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAA-GGAATGAACTCCCTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
14227077 ACCGATCGGAGAGGCAGAATGTGCATGTCGAGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGAG
64 GCCGACCGGAGAGGCAGAATGTGCAAGTCG-GGATCGGCCCGGTCCCCCTCTACATGCTGTCCAG
* * *
14227142 CTTGCTATCATAACCCTCGG-TC-C-G
128 CCTGCTACCACAACCCTCGGTTCGCGG
* * * * * *
14227166 G-TTTGACAAGGAATTAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTGAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
14227230 CCGACCGGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGATCCCCCTCTACGTGCTG-CCAGT
65 CCGACCGGAGAGGCAGAATGTGCAAGTC-GGGATCGGCCCGGTCCCCCTCTACATGCTGTCCAG-
*
14227294 CCTGCTGCCACAACCCTCGGTTCGGCTGGG
128 CCTGCTACCACAACCCTCGGTTC-GC--GG
* ** * *
14227324 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
14227389 CCGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC
65 CCGACCGGAGAGGCAGAATGTGCAAGTC-GGGATCGGCCCGGTCCCCC
14227437 CTGCGTGTTG
Statistics
Matches: 221, Mismatches: 39, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
151 3 0.01
152 116 0.52
153 6 0.03
155 1 0.00
158 3 0.01
159 92 0.42
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (154 bp):
GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGACCGGAGAGGCAGAATGTGCAAGTCGGGATCGGCCCGGTCCCCCTCTACATGCTGTCCAGCCT
GCTACCACAACCCTCGGTTCGCGG
Found at i:14228732 original size:158 final size:156
Alignment explanation
Indices: 14228239--14228732 Score: 541
Period size: 158 Copynumber: 3.1 Consensus size: 156
14228229 TGCTTAGGCA
*
14228239 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-GCACTCAGCCGGTCGG
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGAG--CTCAGCCGATCGG
* * * *
14228303 AGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTTGATCCTGCTGCCG
64 AGAGGCAGAATGCGAAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCA
*
14228368 CAACCCTC-ACTCCGGTCTGATCTTAGAC
129 CAACCCTCGA-TCCGGTTTGATCTTAGAC
* * * * * * * *
14228396 TACGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGAGTGCTGAGTCGACCGG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GAGCTCAGCCGATCGG
* * * *
14228461 AGAGGCATAATGCGCAAGCCGGGGATAGG-CTCGGTCCCCCTCTGCGTGCTGTTGGT-CT-CATT
64 AGAGGCAGAATGCGAAAGCCGGGGATCGGCCT-GGTCCCCC-CTGCGTGCTGTTGATCCTGC--T
** * *
14228523 GCCACAACTTTCGGTCCGGTTGTG-CCTTAGAC
125 GCCACAACCCTCGATCCGGTT-TGATCTTAGAC
* * *
14228555 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCAGGAGCTCAACCGATCGG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGAGCTCAGCCGATCGG
* * * ***
14228620 AGAGGCAGAATACGAAAGTCAGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCA
64 AGAGGCAGAATGCGAAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCA
14228685 CAACCCTCGATCCGGTTTGATCTTAGAC
129 CAACCCTCGATCCGGTTTGATCTTAGAC
*
14228713 TGGGAATGAACTCCATATGC
1 T-GGAATGAACTCCGTATGC
14228733 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 46, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
157 6 0.02
158 141 0.51
159 120 0.44
160 8 0.03
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (156 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGAGCTCAGCCGATCGGAG
AGGCAGAATGCGAAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCACA
ACCCTCGATCCGGTTTGATCTTAGAC
Found at i:14228742 original size:26 final size:26
Alignment explanation
Indices: 14228706--14228755 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14228696 CCGGTTTGAT
14228706 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14228732 CTTAGACTGGGGATGAACTCCATA
1 CTTAGACTGGGAATGAACTCCATA
14228756 AGCCTATGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14229123 original size:26 final size:26
Alignment explanation
Indices: 14229073--14229123 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14229063 TCGGTCCAAT
**
14229073 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14229099 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
14229124 ACCTGAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14229293 original size:26 final size:26
Alignment explanation
Indices: 14229257--14229309 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14229247 CCGATCTGAT
14229257 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14229283 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14229309 C
1 C
14229310 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14229651 original size:26 final size:26
Alignment explanation
Indices: 14229600--14229652 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14229590 CCGATTTGAT
*
14229600 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14229626 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
14229652 C
1 C
14229653 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14229754 original size:184 final size:180
Alignment explanation
Indices: 14229441--14229995 Score: 445
Period size: 196 Copynumber: 3.0 Consensus size: 180
14229431 TCCAACTGGG
* * * * * * * *
14229441 GCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACACACAAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGACACTCAG
** * * * * * * *
14229506 CCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGATGTCTATCC
66 CTAG-CCGAGAGGCAGAATGCGCAAGCCA-GGATCGG-CTGGT-ACCCCTGCGTGCTATCTATCC
*
14229571 TGCTGCCGCAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCTATAT
127 TGCTGCCGCAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCCATAT
* * *
14229625 GCTTAGAC-TGGAGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGACACTCA
1 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGACACTCA
** *
14229689 TTTAGCCAGAGAGGCAGAATGCGCATGCCGAGGATCGGTCTGGTACCCTCTGCGTGCTATCTATC
65 GCTAGCC-GAGAGGCAGAATGCGCAAGCC-AGGATCGG-CTGGTACCC-CTGCGTGCTATCTAT-
* * * * *
14229754 CTGCTGCTGGTCCTGCTACCGC-AAGCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCA
125 C--CTGCT-G-CC-GCAACC-CTCAGTC-CGAT-T--T--GATCTTAGACTGGGAATGAACTCCA
14229818 TAT
178 TAT
** * * *
14229821 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCCTCCCACGAAACGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGACACTCAG
* * * * * * *
14229886 CTGGTCGAAGAGGCAGAATGCGTAAGCCAGGATCAGCTCGGTACCCCTGCATGCTATCAATCCTA
66 CTAGCCG-AGAGGCAGAATGCGCAAGCCAGGATCGGCT-GGTACCCCTGCGTGCTATCTATCCTG
* * *
14229951 CTACTAG-AA-CCTC-GATCCGATCTGATCTTAGACTGGGAATGAACT
129 CTGC-CGCAACCCTCAG-TCCGATTTGATCTTAGACTGGGAATGAACT
14229996 TCGTATGCCT
Statistics
Matches: 294, Mismatches: 54, Indels: 49
0.74 0.14 0.12
Matches are distributed among these distances:
181 21 0.07
183 8 0.03
184 94 0.32
185 2 0.01
186 5 0.02
187 7 0.02
188 2 0.01
189 4 0.01
190 8 0.03
191 8 0.03
192 1 0.00
193 1 0.00
194 16 0.05
195 15 0.05
196 98 0.33
197 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (180 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGACACTCAG
CTAGCCGAGAGGCAGAATGCGCAAGCCAGGATCGGCTGGTACCCCTGCGTGCTATCTATCCTGCT
GCCGCAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:14229825 original size:26 final size:26
Alignment explanation
Indices: 14229796--14229848 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14229786 CTGGTCCAAT
14229796 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
14229822 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14229848 C
1 C
14229849 CTAAGCCCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14229902 original size:196 final size:194
Alignment explanation
Indices: 14229598--14229949 Score: 476
Period size: 196 Copynumber: 1.8 Consensus size: 194
14229588 GTCCGATTTG
* *
14229598 ATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGCCAAC
* * ** * *
14229663 CCACAAAATGAGCGTGCGGACACTCATTTAGCCAGAGAGGCAGAATGCGCATGCCGAGGATC-GG
66 CCACAAAACGAGCATGCGGACACTCAGCTAGCCAGAGAGGCAGAATGCGCAAGCC-AGGATCAGC
* *
14229727 TCTGGTACCCTCTGCGTGCTATCTATCCTGCTGCTGGTCCTGCTACCGCAAGCCTCGGTCTGGTC
130 TC-GGTACCC-CTGCATGCTATCAATCCTGCTGCTGGTCCTGCTACCGCAAGCCTCGGTCTGGTC
14229792 CA
193 CA
**
14229794 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCCT
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGAGATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14229858 CCCACGAAACGAGCATGTGGGCACTCAGCTGGTC-GAAGAGGCAGAATGCGTAAGCCAGGATCAG
65 CCCACAAAACGAGCATGCGGACACTCAGCTAGCCAG-AGAGGCAGAATGCGCAAGCCAGGATCAG
14229922 CTCGGTACCCCTGCATGCTATCAATCCT
129 CTCGGTACCCCTGCATGCTATCAATCCT
14229950 ACTACTAGAA
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
194 16 0.12
195 14 0.10
196 101 0.75
197 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (194 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACGAGCATGCGGACACTCAGCTAGCCAGAGAGGCAGAATGCGCAAGCCAGGATCAGCT
CGGTACCCCTGCATGCTATCAATCCTGCTGCTGGTCCTGCTACCGCAAGCCTCGGTCTGGTCCA
Found at i:14230193 original size:159 final size:155
Alignment explanation
Indices: 14229821--14230199 Score: 368
Period size: 155 Copynumber: 2.4 Consensus size: 155
14229811 AACTCCATAT
** * *
14229821 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCCTCCCACGAAACGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * *
14229886 CTGGTCGAAGAGGCAGAATGCGTAAGCCAGGATCAGCTCGGTACCCCTGCATGCTATCAATCCTA
66 CTGACCGAAGAGGCAGAATGCGCAAGCCAGGATCAGCTCGGTACCCCTGCATGCTATCAATCCCA
* *
14229951 CTACTAGAACCTCGATCCGATCTGA
131 CTACCACAACCTCGATCCGATCTGA
* * * * * * * * *
14229976 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACCAAATGCGTGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * **
14230040 GCTGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGGCTCGGT-CGCCTTCTGCGTGCTGTCGG
65 GCTGACCGAAGAGGCAGAATGCGCAAG-CCAGGATCAGCTCGGTAC-CC--CTGCATGCTATCAA
* * *
14230104 TCCCGCTACCACAACCCTCGGTCCGA-CTGGG
126 TCCCACTACCACAA-CCTCGATCCGATCT-GA
* ** * *
14230135 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTTGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
14230200 TCGATTGGAG
Statistics
Matches: 174, Mismatches: 42, Indels: 12
0.76 0.18 0.05
Matches are distributed among these distances:
154 1 0.01
155 73 0.42
156 16 0.09
158 22 0.13
159 61 0.35
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CTGACCGAAGAGGCAGAATGCGCAAGCCAGGATCAGCTCGGTACCCCTGCATGCTATCAATCCCA
CTACCACAACCTCGATCCGATCTGA
Found at i:14230688 original size:26 final size:26
Alignment explanation
Indices: 14230659--14230711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14230649 TTGATCCGAT
14230659 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
*
14230685 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14230711 C
1 C
14230712 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14231858 original size:158 final size:157
Alignment explanation
Indices: 14231497--14231871 Score: 362
Period size: 158 Copynumber: 2.4 Consensus size: 157
14231487 CTGCTGCTGG
* * * * *
14231497 TCCTACTACTACAACCCTCTG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 TCCTACTGCCACAACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
* * * * * * **
14231561 TCAACCCACGAACAAGCGTGCGGGCGCTGAGCTGACCAGAGAGGCATAATTCGTAAGTTGGGGAT
65 CCAACCCACGAACAAGCGTACGGGCGCTCAGCTGACCAGAAAGGCAGAATGCGTAAGCCGGGGAT
* *
14231626 CGACCCAATCCCCCTTTGCGTGCTATCGG
130 CGACCCAATCCCCC-TTGCGTACTATCGA
* ** * * *
14231655 TCCTGCTGCCACAACCCTCGATCCGGT-TGGGGCTTGGACAT-GGAATGAAGTCCCTATGCCTAA
1 TCCTACTGCCACAACCCTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCTAA
* * * * *
14231718 GCCAACCCATGAAACGAGCTTACGGGTGCTCAGCTGGCCAGAAAGGCAGAATGCGTAAGCCGGGG
64 GCCAACCCACG-AACAAGCGTACGGGCGCTCAGCTGACCAGAAAGGCAGAATGCGTAAGCCGGGG
* * * *
14231783 ATCGACTCGATCCTTCC-TGCGTACTGTCGA
128 ATCGACCCAATCC-CCCTTGCGTACTATCGA
** * *
14231813 TCCTACTGCCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
1 TCCTACTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
14231872 TTAGACTGGG
Statistics
Matches: 171, Mismatches: 39, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 112 0.65
159 55 0.32
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (157 bp):
TCCTACTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
CAACCCACGAACAAGCGTACGGGCGCTCAGCTGACCAGAAAGGCAGAATGCGTAAGCCGGGGATC
GACCCAATCCCCCTTGCGTACTATCGA
Found at i:14231881 original size:26 final size:26
Alignment explanation
Indices: 14231845--14231897 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14231835 TCGGTCTGAT
14231845 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14231871 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14231897 C
1 C
14231898 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14232604 original size:26 final size:26
Alignment explanation
Indices: 14232566--14232618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14232556 GGCTCAAACT
14232566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14232592 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14232618 C
1 C
14232619 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14232947 original size:159 final size:158
Alignment explanation
Indices: 14232591--14232948 Score: 355
Period size: 158 Copynumber: 2.3 Consensus size: 158
14232581 AACTCCGTAT
* * * **
14232591 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * * * * * * *
14232656 TCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATGC
66 CCAGTCGAAAAGGCAGAATACGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
** * *
14232721 TGCTGCAGCAACCCTCAGTTCGATCTAA
131 CACTGCAGCAACCCTCAGTCCGAGCTAA
* ** ** *
14232749 CCTTAGAC-TAGGAATGAACTCCGTATGCAAAAGTTAACCCACAAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* *
14232813 GCCAGTCGAAAAGGCATAATACGCAAG-CTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGG
65 GCCAGTCGAAAAGGCAGAATACGCAAGTC-GAGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGA
* * **
14232877 TCCCACTGCCA-CAACCTTTAGTCCG-GCTGGG
128 TCCCACTG-CAGCAACCCTCAGTCCGAGCT-AA
*
14232908 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
14232949 TGAAACAGGC
Statistics
Matches: 157, Mismatches: 37, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 91 0.58
159 61 0.39
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCAGTCGAAAAGGCAGAATACGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
CACTGCAGCAACCCTCAGTCCGAGCTAA
Found at i:14233096 original size:26 final size:26
Alignment explanation
Indices: 14233067--14233119 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14233057 CTGGTCCAAT
14233067 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* * *
14233093 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
14233119 C
1 C
14233120 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:14234495 original size:159 final size:158
Alignment explanation
Indices: 14234140--14234578 Score: 425
Period size: 159 Copynumber: 2.8 Consensus size: 158
14234130 AACTCCGTAT
* * *
14234140 GCTTAGACATGGAATGAACTCTGTCTAG-CTAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCA
1 GCTTAGACATGGAATGAACTCCGTAT-GCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCA
** * * * *
14234204 ACCGATCGGAGAGGCAGAATGCGTAAGTCAGGGACCGACTCGGTCCCCCCTGCGTGCTGTCGATC
65 ACCGATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCCCTACGTGCTGCCGATC
** *
14234269 CTGCTACCGCAACCCTCGGTCCGGTCCGA
130 CCACTACCACAACCCTCGGTCCGGTCCGA
* * * * * * *
14234298 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCA
* * * ** * *
14234362 GCTGATCGGAGAGGCATAATGCACAAGCCAGGGATTGGCCCGGTCCCCCTCTACGTGCTGCCGGT
65 ACCGATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCC-CTACGTGCTGCCGAT
* * ** *
14234427 CCCACTGCCACAACCCTCGGTTCGGTTGGG
129 CCCACTACCACAACCCTCGGTCCGGTCCGA
* * *
14234457 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCA-CTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGG-AGCTCA
* * * * ** * * * *
14234521 GCAGACCGGGGAGGCAGAATGCGTAAGCCAAGGATCAACCCGGTCCCCCCTGCGTGCT
65 ACCGATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCCCTACGTGCT
14234579 ATCGATCCTA
Statistics
Matches: 226, Mismatches: 50, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
157 2 0.01
158 97 0.43
159 126 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAGCTCAA
CCGATCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGGTCCCCCCTACGTGCTGCCGATCC
CACTACCACAACCCTCGGTCCGGTCCGA
Found at i:14234645 original size:26 final size:26
Alignment explanation
Indices: 14234616--14234668 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14234606 CTGGTCTGAT
*
14234616 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14234642 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14234668 C
1 C
14234669 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14234863 original size:26 final size:26
Alignment explanation
Indices: 14234825--14234877 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14234815 CTGATCCGAT
*
14234825 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14234851 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14234877 C
1 C
14234878 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14235105 original size:158 final size:157
Alignment explanation
Indices: 14234851--14235193 Score: 506
Period size: 158 Copynumber: 2.2 Consensus size: 157
14234841 ACTTCGTATG
* *
14234851 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGAGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACAGGAGCTCAAC
* *
14234916 CGATCGGAGAGGCAGAATGCGTAAGCCAGGGACCGACTCGGTCCCCCCTGCGTGCTGTCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCTGCGTGCTATCGATCCT
*
14234981 GCTACCGCAACCCTCGGTCCGGTCTGAT
130 GCTACCGCAACCCTCGATCCGGTCTGAT
* * * * *
14235009 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACAGGAGCTCAAC
* * * *
14235074 CGCTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGATTCGGTCCCCTCTGCGTGCTATCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCTGCGTGCTATCGATCCT
* *
14235139 GCTGCCGCAACCCTTGATCCGGTCTGAT
130 GCTACCGCAACCCTCGATCCGGTCTGAT
*
14235167 CTTAGACTAGGAATGAACTTCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
14235194 TTAGACTGGG
Statistics
Matches: 166, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
157 1 0.01
158 165 0.99
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACAGGAGCTCAACC
GATCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACTCGGTCCCCCCTGCGTGCTATCGATCCTG
CTACCGCAACCCTCGATCCGGTCTGAT
Found at i:14235218 original size:26 final size:26
Alignment explanation
Indices: 14235167--14235219 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14235157 CCGGTCTGAT
* *
14235167 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14235193 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14235219 C
1 C
14235220 CTAAGTCCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14236173 original size:26 final size:26
Alignment explanation
Indices: 14236137--14236189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14236127 CCGGTTCGAT
*
14236137 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14236163 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14236189 C
1 C
14236190 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14236559 original size:117 final size:117
Alignment explanation
Indices: 14236345--14236559 Score: 268
Period size: 117 Copynumber: 1.8 Consensus size: 117
14236335 TTAGACATGG
* *
14236345 AATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGAGGGCGCTCAGCCATCCAGAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGAGGGCGCTCAGCCAGCCAGAGAG
* * * **
14236410 GCAGAATGCACAAAATGGGGATCGGCTTGATCCAATTTGATCTGAGATAGGA
66 GCAGAATGCACAAAACGAGGATCGACCAGATCCAATTTGATCTGAGATAGGA
* * * * * * * *
14236462 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGCCAGAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGAGGGCGCTCAGCCAGCCAGAGAG
* **
14236527 GCATAATGCACAAGCCGAGGATCGACCAGATCC
66 GCAGAATGCACAAAACGAGGATCGACCAGATCC
14236560 CCCTCTGCGT
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
117 80 1.00
ACGTcount: A:0.31, C:0.27, G:0.27, T:0.15
Consensus pattern (117 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGAGGGCGCTCAGCCAGCCAGAGAG
GCAGAATGCACAAAACGAGGATCGACCAGATCCAATTTGATCTGAGATAGGA
Found at i:14237517 original size:159 final size:158
Alignment explanation
Indices: 14237173--14237553 Score: 426
Period size: 158 Copynumber: 2.4 Consensus size: 158
14237163 AACTCCACAT
* * *
14237173 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
14237238 CCAGTCAGAGAGGCAGAATGCGTAAGTCGGGGACCGGCTCGGTCCCCCCTATGTGCTGTCGATCC
66 CCAGCCAGAGAGGCAGAATGAGCAAGCCGAGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* ** * *
14237303 TGCTGCTGCAACCCTCAGTCTTATCCGA
131 CGCTGCCACAACCCTCAGTCTGATCAGA
* * * *
14237331 TCTTAGAC-TGGGAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
14237395 ACC-GACCGGAGAGGCATAATGAGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGG
65 ACCAG-CCAGAGAGGCAGAATGAGCAAGCCGAGGACCGGCCCGATCCCCC-CTACGTGCTGTCGA
* * *
14237459 TCCCGCTGCCACAACCCTCGGTCCTGCT-AGG
128 TCCCGCTGCCACAACCCTCAGT-CTGATCAGA
* * *
14237490 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
14237554 GTCGACCGAA
Statistics
Matches: 183, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.50
159 85 0.46
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAGCCAGAGAGGCAGAATGAGCAAGCCGAGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTCTGATCAGA
Found at i:14237582 original size:159 final size:157
Alignment explanation
Indices: 14237173--14237674 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 157
14237163 AACTCCACAT
* *
14237173 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14237238 CCAGTCAGAGAGGCAGAATGCGTAAGTCGGGGACCGGCTCGGTCCCCC-CTATGTGCTGTCGATC
66 CC-GACCGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCT-CGTGCTGTCGATC
* ** * *
14237302 CTGCTGCTGCAACCCTCAGTCTTATCCGA
129 CCGCTGCCACAACCCTCAGTCTGATCAGA
* * * *
14237331 TCTTAGAC-TGGGAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14237395 ACCGACCGGAGAGGCATAATGAGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGT
65 GCCGACC-GAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCT-CGTGCTGTCGAT
* * *
14237460 CCCGCTGCCACAACCCTCGGTCCTGCT-AGG
128 CCCGCTGCCACAACCCTCAGT-CTGATCAGA
* * *
14237490 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
14237555 TCGACCGAAAAGGCAGAATGCGTAAGCCGGGGAT-GCGCCTGATCCCCCT-TCGTGCT-TCCGAT
66 CCGACCG-AGAGGCAGAATGCGTAAGCCGGGGATCG-GCCCGATCCCCCTCTCGTGCTGT-CGAT
** * * * * *
14237617 CCTTCTGCTATAACCCTCGGTCCGATCTGA
128 CCCGCTGCCACAACCCTCAGTCTGATCAGA
* *
14237647 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14237675 TTAGACCAGG
Statistics
Matches: 279, Mismatches: 55, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 5 0.02
157 53 0.19
158 94 0.34
159 123 0.44
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTCGTGCTGTCGATCCC
GCTGCCACAACCCTCAGTCTGATCAGA
Found at i:14238723 original size:26 final size:26
Alignment explanation
Indices: 14238682--14238734 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14238672 CTGGTTTGAT
*
14238682 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14238708 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14238734 C
1 C
14238735 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14238908 original size:26 final size:26
Alignment explanation
Indices: 14238879--14238931 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14238869 CCAGTCCGAT
14238879 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14238905 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14238931 C
1 C
14238932 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14239310 original size:138 final size:138
Alignment explanation
Indices: 14239062--14239310 Score: 315
Period size: 138 Copynumber: 1.8 Consensus size: 138
14239052 CCGGTCTGAT
* * * *
14239062 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGGGCGTTCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGTTCAGGCGCTCAGC
* * * * *
14239127 CGGCCAGAGAGGCATAATACGCAAGTCGGGGATCGACCTGGTCCCCTTCTGTGTGCTGTCGGTCC
66 CGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCTTCTGTGTGCTGTCGGTCC
14239192 GGCTGGGG
131 GGCTGGGG
*
14239200 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGTGT-GGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGT-TCAGGCGCTCA
* * * * *
14239263 GCTGACC-GAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCC
64 GCCGACCAG-AGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCC
14239311 CCTACGTGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
137 1 0.01
138 90 0.97
139 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.19
Consensus pattern (138 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGTTCAGGCGCTCAGC
CGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCTTCTGTGTGCTGTCGGTCC
GGCTGGGG
Found at i:14239387 original size:26 final size:26
Alignment explanation
Indices: 14239358--14239410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14239348 CCGGTCTGAT
14239358 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14239384 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14239410 C
1 C
14239411 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14239765 original size:26 final size:26
Alignment explanation
Indices: 14239727--14239777 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14239717 CCGGTCCGAT
*
14239727 CTTAGACTGGGAACGAACTCTGTATC
1 CTTAGACTGGGAACGAACTCCGTATC
*
14239753 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAACGAACTCCGTAT
14239778 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATC
Found at i:14239783 original size:185 final size:184
Alignment explanation
Indices: 14239567--14239935 Score: 519
Period size: 185 Copynumber: 2.0 Consensus size: 184
14239557 TCCGGCTGGG
* *** *
14239567 CCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCG-CTCT
1 CCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGG-GTCTCA
* * * * * *
14239631 GCCGGCCGGAGAGGCAGAATGCGCAAGACGGGGATCGAG-TCGATCCCCCCTTGCGTGCTACCGA
65 ACCGACCGAAGAGGCAGAATGCACAAGACGGGGACCG-GCCCGATCCCCCC-TGCGTGCTACCGA
*
14239695 TCCTGCTG-CTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCTGTAT
128 TCCTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCGTAT
14239752 CCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGGTCTCAA
1 CCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGGTCTCAA
* ** *
14239817 CCGACCGAAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCT
66 CCGACCGAAGAGGCAGAATGCACAAGACGGGGACCGGCCCGATCCCCCCTGCGTGCTACCGATCC
* *
14239882 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCGTAT
14239936 GCCTAAGTCA
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
184 64 0.39
185 99 0.61
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (184 bp):
CCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGGTCTCAA
CCGACCGAAGAGGCAGAATGCACAAGACGGGGACCGGCCCGATCCCCCCTGCGTGCTACCGATCC
TGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCCGTAT
Found at i:14240100 original size:159 final size:158
Alignment explanation
Indices: 14239753--14240190 Score: 468
Period size: 159 Copynumber: 2.8 Consensus size: 158
14239743 ACTCTGTATC
* ** ** *
14239753 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGGTCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
** * * * ** **
14239818 CGACCGAAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCTT
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCC
* * * *
14239883 GCTGTCGCAACCCTCGGTCCGGTCTGAT
131 GCTGCCACAACCCTCAGTCCGGTCTGAG
* * *
14239911 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * *
14239975 TCGGTCGGAGAAGCATAATGCGCAAGTCGGGGATCAACCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCC-CTGCGTGCTGTCGATC
* *
14240040 CCGCTGCCACAACCCTCAGTTCGG-CTGGGG
129 CCGCTGCCACAACCCTCAGTCCGGTCT-GAG
* * * * *
14240070 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACTCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * ** * *
14240135 CGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGT-CCCCCTGCGTGCTG
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTG
14240191 CCTATCCTGC
Statistics
Matches: 229, Mismatches: 47, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
157 11 0.05
158 96 0.42
159 121 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCAGTCCGGTCTGAG
Found at i:14240256 original size:26 final size:26
Alignment explanation
Indices: 14240227--14240279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14240217 CCGATCCAAT
14240227 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14240253 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14240279 C
1 C
14240280 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14240335 original size:342 final size:355
Alignment explanation
Indices: 14239911--14240717 Score: 937
Period size: 368 Copynumber: 2.3 Consensus size: 355
14239901 CCGGTCTGAT
* * *
14239911 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* *
14239976 CGGTCGGAGAAGCATAATGCGCAAGTCGGGGATCAACCCGA-TCCCCCTCTGCGTGCT-G-TCGG
66 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATC-ACCCGAGTCCCCCTCTGCGTGCTGGATCGC
*
14240038 T-CC-C-GCTGCCACAACCCTCAGT-TCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCT
130 TGCCGCTGCTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCCTATACCT
* * ** * * * *
14240099 AAGCCAACTCACGAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGA
194 AAGCCAACCCACAAAATGAACGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGA
* * **
14240164 GGATCGGCCTGGTCCC-CCTGC-G-T-G-C-TGC-C-TATCCTGCTATTGCAACCCTCGATCCGA
259 GGATCGACCCGGTCCCTCCTGCGGATCGACTTGCGCTTATCCTGCTACCGCAACCCTCGATCCGA
14240221 TCCAATCTTAGACTGGGAATGAACTCCATATG
324 TCCAATCTTAGACTGGGAATGAACTCCATATG
* * * *
14240253 CTTAGACTGGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACAAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * *
14240318 CGGTCGGAGAGGCATAATGCGCAA-TCCGTGGATCAGCCTAGTCCCCCTCTGCGTGCTGGCGATC
66 CGGTCGGAGAGGCATAATGCGCAAGT-CGGGGATCACCCGAGTCCCCCTCTGCGTGCT-G-GA--
*
14240382 TCGCTGCCGGTTCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGT
126 TCGCTGCC-G--CTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCT
* * *
14240447 ATGCCTAAGCCAACCCACAAAATGAACGTACGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCACA
188 ATACCTAAGCCAACCCACAAAATGAACGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACA
* * * *
14240512 AGCTGGGGATCGACCCGGTCCCTTCCTGCGTGCTATCGATCTTGCTGCTTGTCCTGCTACCGTAA
253 AGCCGAGGATCGACCCGGTCCC-TCCTGCG-G--ATCGA-CTTGC-GCTTATCCTGCTACCGCAA
* * * *
14240577 CCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATG
312 CCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATG
* * * **
14240621 CTTAGACAT-TGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
14240685 TCGGTCGGAGAGGCAAAATGGGCAAGTCAGGGA
65 TCGGTCGGAGAGGCATAATGCGCAAGTCGGGGA
14240718 CTGGCCCTAT
Statistics
Matches: 384, Mismatches: 50, Indels: 36
0.82 0.11 0.08
Matches are distributed among these distances:
341 5 0.01
342 104 0.27
345 1 0.00
348 4 0.01
349 2 0.01
353 1 0.00
354 119 0.31
355 1 0.00
356 5 0.01
358 1 0.00
361 1 0.00
362 1 0.00
364 1 0.00
365 3 0.01
367 1 0.00
368 132 0.34
369 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCACCCGAGTCCCCCTCTGCGTGCTGGATCGCT
GCCGCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAA
GCCAACCCACAAAATGAACGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAGG
ATCGACCCGGTCCCTCCTGCGGATCGACTTGCGCTTATCCTGCTACCGCAACCCTCGATCCGATC
CAATCTTAGACTGGGAATGAACTCCATATG
Found at i:14240543 original size:171 final size:171
Alignment explanation
Indices: 14240252--14240621 Score: 363
Period size: 171 Copynumber: 2.2 Consensus size: 171
14240242 AACTCCATAT
* * * * *
14240252 GCTTAGACTGGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAG
* * * * * * *
14240317 CCGGTCGGAGAGGCATAATGCGCAATCCGTGGATCAGCCTAGTCCCCCTCTGCGTGCTGGCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTAGCGATC
14240382 TCGCTGCCGGTTCTGCTGCCACAACCCTCGGTCTGGCTGGG
131 TCGCTGCCGGTTCTGCTGCCACAACCCTCGGTCTGGCTGGG
* **
14240423 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAA-CGTACGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-CAAGCGTACGGGCACTC
* * * * *
14240486 AGTCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATC-GACCCGGT-CCCTTCCTGCGTGCTATC
64 AGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAG-CCCAGTCCCCCT-CTGCGTGCTAGC
* ** * * ** * * * *
14240549 GATCTTGCTGCTTGTCCTGCTACCGTAACCCTCGGTC-CGATCCGA
127 GATCTCGCTGCCGGTTCTGCTGCCACAACCCTCGGTCTGGCT-GGG
* *
14240594 TCTTAGATTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
14240622 TTAGACATTG
Statistics
Matches: 160, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
170 8 0.05
171 149 0.93
172 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTAGCGATC
TCGCTGCCGGTTCTGCTGCCACAACCCTCGGTCTGGCTGGG
Found at i:14240876 original size:868 final size:863
Alignment explanation
Indices: 14238707--14241285 Score: 2923
Period size: 868 Copynumber: 3.0 Consensus size: 863
14238697 AACTTCGTAT
* * * * * * *
14238707 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACCGACGTTCG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCA
** *
14238771 GTCAACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTTGCGTGCTGCCGAT
65 GTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTTGCGTGCTACCGAT
*
14238836 CTTGCTG-TTGGTCCTGCTATCGCAACCCCCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTC
130 CTTGCTGCTT-GTCCTGCTA-CG-AACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTC
* *
14238899 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAACGAGTGTGCGGGTG
191 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG
* * * *
14238964 CTCAGTCGACCGGAGTGGCAGAATGCGCAAGTCGGGGACCGACCCGGTCCCCCC-ATGTGCTGTC
256 CTCAGTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTGTC
* *
14239028 GATCCTGCTAT-C-GCAACCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
321 GATCCTG-T-TGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
14239091 AAGTCAACCCATGAAACGGGCGTTCAGGCGCTGAGCCGGCCAGAGAGGCATAATACGCAAGTCGG
384 AAGTCAACCCACGAAACGAGCGTTC-GGGGATGAGCCGGTC-GAGAGGCATAATGCGCAAGTCGG
* *
14239156 GGATCGACCTGGT--CCC-CT--T-CTGT--GT---GCTG---------TCGGTCCGGCTGGGGC
447 GGATC-ACCCGATCCCCCTCTGGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGC
* * * *
14239201 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGTGTGGGCGCTCAGCT
511 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAGCC
* * * * * * *
14239266 GACCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTATCGATCCTA
576 GATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCCTGCGTGCTGTCGATCCTA
* *
14239331 CTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
640 CTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
* * *
14239396 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTCAGCCAGCTGGAGAGG
705 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC--G-G----G-CA-CT---CA-G
* * * * * * * *
14239461 CCGGTCAGAGAGGCATAATGCGCGAGCTGGGGATCA-ACTCGATCCCCTTATGCATGCTGCCGAT
757 CCGGTCGGAGAGGCATAATGCGCAATCCGGGGATCAGCCTCGATCCCCCTCTGCGTGCTGCCGAT
* * *
14239525 -TCCGCTACCGGTCCTACTGCCACAACCCTCGGTCCGGCTGGG
822 CT-CGCTGCCGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGG
* * * * *
14239567 CCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAG
* **
14239632 CCGGCCGGAGAGGCAGAATGCGCAAGAC-GGGGATCGAGTCGATCCCCCCTTGCGTGCTACCGAT
66 TCGGCCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGACCCGATCCCCCCTTGCGTGCTACCGAT
* * *
14239696 C---CTGC-TG--CTG---C-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAACGAACTCTGTA
130 CTTGCTGCTTGTCCTGCTACGAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
14239751 TCCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGG-GTCTC
195 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG-CTC
** * * * *
14239815 AACCGACCGAAGAGGCAGAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTGCGTGCTGTCGAT
259 AGTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGAT
* *
14239880 CTTGCTG-TCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
324 CCTGTTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
14239944 CAACCCACGAAATGAGCGTACGGGCACTGAGTCGGTCGGAGAAGCATAATGCGCAAGTCGGGGAT
388 CAACCCACGAAACGAGCGTTCGGGGA-TGAGCCGGTC-GAGAGGCATAATGCGCAAGTCGGGGAT
* *
14240009 CAACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTTCGGCTGGGGCTTA
451 C-ACCCGATCCCCCTCTG-GTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTA
* * * * *
14240074 GACATGGAATGAACTCCCTATACCTAAGCCAACTCACGAAATGGGCGTGCGGGCGCTCAGCCGGT
514 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAGCCGAT
* * * * **
14240139 CGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTGCGTGCTGCCTATCCTGCTAT
579 CGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTGCGTGCTGTCGATCCTACTGC
* * * **
14240204 TGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
644 CGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
* *
14240269 ACTCCGTATGCCTATGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCATA
709 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCATA
* * * *
14240334 ATGCGCAATCCGTGGATCAGCCTAG-TCCCCCTCTGCGTGCTGGCGATCTCGCTGCCGGTTCTGC
774 ATGCGCAATCCGGGGATCAGCCTCGATCCCCCTCTGCGTGCTGCCGATCTCGCTGCCGGTCCTGC
14240398 TGCCACAACCCTCGGTCTGGCTGGG
839 TGCCACAACCCTCGGTCTGGCTGGG
* *
14240423 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAACGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAG
* * * *
14240488 TCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCTTCC-TGCGTGCTATCGAT
66 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCC-CCCTTGCGTGCTACCGAT
*
14240552 CTTGCTGCTTGTCCTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCG
130 CTTGCTGCTTGTCCTGCTA-CG-AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCG
*
14240617 TATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT
193 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT
** * * * * *
14240682 CAGTCGGTCGGAGAGGCAAAATGGGCAAGTCAGGGACTGGCCCTATCCCCCCTACGTGCTGTCGA
258 CAGTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGA
* * ** *
14240747 TCCTGTTGCTGTAACCCTCGGTTCGGTCCAATCCTAGACTGGGAATGAACTCCGTATGCCTAAGT
323 TCCTGTTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * * *
14240812 CAACCCCCGGAACAAGTGTTCGGGTGATGAACCGGTCGTAGGGGCATAGTGCGTAAGCCGGGGAT
388 CAACCCACGAAACGAGCGTTCGGG-GATGAGCCGGTCG-AGAGGCATAATGCGCAAGTCGGGGAT
* * * *
14240877 CGCACCGATCCCCCTCTGTGTGCTGTCGATCCCACTGCCACAACCCTCGGTCCGGTTGGGGCTTA
451 CAC-CCGATCCCCCTCTG-GTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTA
* * * *
14240942 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTATGGGCGCT-ATACCGA
514 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCA-GCCGA
* * *
14241006 TTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCATCTGCGTGCTGTCGATCCTAC-
578 TCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCC-CCTGCGTGCTGTCGATCCTACT
* * * *
14241070 GCCGTAACCCTGGGTTCGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGAT
642 GCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGAT
* * ** * * * * *
14241135 GAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCATGCATGCATTCAGCCAGCCGAAGAGACA
707 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCA
* ** * ** * *
14241200 GAATGCGCAAGT-CGGGGATTGGCC-CGATCACCCC-CTGCGTTCTATCGATCTTGCTGCTGGTC
772 TAATGCGCAA-TCCGGGGATCAGCCTCGATC-CCCCTCTGCGTGCTGCCGATCTCGCTGCCGGTC
*
14241262 CTGCTGCCACAAGCCTCGGTCTGG
835 CTGCTGCCACAACCCTCGGTCTGG
14241286 TCTGATCATA
Statistics
Matches: 1441, Mismatches: 221, Indels: 106
0.82 0.12 0.06
Matches are distributed among these distances:
847 2 0.00
848 140 0.10
849 123 0.09
850 1 0.00
851 3 0.00
852 2 0.00
854 3 0.00
855 2 0.00
856 202 0.14
857 11 0.01
858 2 0.00
859 4 0.00
860 113 0.08
861 8 0.01
862 4 0.00
866 2 0.00
867 5 0.00
868 572 0.40
869 137 0.10
870 105 0.07
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (863 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTTGCGTGCTACCGATC
TTGCTGCTTGTCCTGCTACGAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCC
TGTTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTTCGGGGATGAGCCGGTCGAGAGGCATAATGCGCAAGTCGGGGATCACCC
GATCCCCCTCTGGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAGCCGATCGGAGAG
GTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACC
CTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCATAATGCGCA
ATCCGGGGATCAGCCTCGATCCCCCTCTGCGTGCTGCCGATCTCGCTGCCGGTCCTGCTGCCACA
ACCCTCGGTCTGGCTGGG
Found at i:14241121 original size:157 final size:158
Alignment explanation
Indices: 14240631--14241121 Score: 375
Period size: 159 Copynumber: 3.1 Consensus size: 158
14240621 CTTAGACATT
* * * * * * * * ** *
14240631 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGA
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTTCGGGCGATGAACCGATCGGAGA
* * * * * * * * ** *
14240696 GGCAAAATGGGCAAGTCAGGGACTGGC-CCTATCCCC-CCTACGTGCTGTCGATCCTGTTGCTGT
66 GGCAGAATGCGCAAGCCGGGGA-TCGCACCGATCCCCATCTGCGTGCTGTCGATCCT-ACGCCGT
* * *
14240759 AACCCTCGGTTCGGTCCAATCCTAGACTGG
129 AACCCTCGGTTCGGTTCGATCTTAGACTGG
* * * * * * * *
14240789 GAATGAACTCCGTATGCCTAAGTCAACCCCCGGAACAAGTGTTCGGGTGATGAACCGGTCGTAGG
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTTCGGGCGATGAACCGATCGGAGA
* * * * * * **
14240854 GGCATAGTGCGTAAGCCGGGGATCGCACCGATCCCCCTCTGTGTGCTGTCGATCCCACTGCCACA
66 GGCAGAATGCGCAAGCCGGGGATCGCACCGATCCCCATCTGCGTGCTGTCGATCCTAC-GCCGTA
* * **
14240919 ACCCTCGGTCCGGTTGGGGCTTAGACAT-G
130 ACCCTCGGTTCGGTTCGATCTTAGAC-TGG
* * * * * *
14240948 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTAT-GGGCGCT-ATACCGATTGGA
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGT-TCGGGCGATGA-ACCGATCGGA
* *
14241011 GAGGCAGAATGCGCAAGCCGGGGATCGGC-CTGGT-CCCATCTGCGTGCTGTCGATCCTACGCCG
64 GAGGCAGAATGCGCAAGCCGGGGATC-GCACCGATCCCCATCTGCGTGCTGTCGATCCTACGCCG
* *
14241074 TAACCCTGGGTTCGGTTTGATCTTAGACTGG
128 TAACCCTCGGTTCGGTTCGATCTTAGACTGG
14241105 GAATGAACTCCATATGC
1 GAATGAACTCCATATGC
14241122 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 66, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 45 0.17
158 99 0.38
159 110 0.42
160 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTTCGGGCGATGAACCGATCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGCACCGATCCCCATCTGCGTGCTGTCGATCCTACGCCGTAA
CCCTCGGTTCGGTTCGATCTTAGACTGG
Found at i:14241131 original size:26 final size:26
Alignment explanation
Indices: 14241095--14241147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14241085 TCGGTTTGAT
14241095 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14241121 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14241147 C
1 C
14241148 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14242363 original size:26 final size:26
Alignment explanation
Indices: 14242325--14242377 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14242315 GTCTAAAAAT
14242325 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14242351 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14242377 C
1 C
14242378 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14243014 original size:158 final size:158
Alignment explanation
Indices: 14242350--14243800 Score: 1397
Period size: 158 Copynumber: 9.2 Consensus size: 158
14242340 AACTCCGTAT
*
14242350 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14242415 CCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCAATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
14242480 TGCTGCCACAACCCTCAATCCGGTCT-GA
131 TGCTGCCACAACCCTCGATCC-GACTGGA
* * * * * * *
14242508 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14242572 GCC-GACTGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCTGCCTCTGTGTGCTG-CCA
65 GCCGGTC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCCCTGCGTGCTGTCGA
* * *
14242635 GTCCCGCTGCCACAACCATCGATCCGGCTAGG-
128 -TCCTGCTGCCACAACCCTCGATCCGACT-GGA
* * * * *
14242667 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
14242732 TCGGTTAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCTACGTGCTGTCGATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * * *
14242796 TGCTACCGCAACCCTCGGTCTG-GTCCGA
131 TGCTGCCACAACCCTCGATCCGACT-GGA
* * * *
14242824 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACAAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14242887 GCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGAT
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * *
14242952 CCCGCTGCCACAACCCTTGATCCGACTGGG
129 CCTGCTGCCACAACCCTCGATCCGACTGGA
* * * *
14242982 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
14243047 CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
14243112 TGCTGTCGCAACTCTC-AGTCCGGTCT-GA
131 TGCTGCCACAACCCTCGA-TCC-GACTGGA
** * * * * * * *
14243140 TTTTAGAC-TAGAAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGAGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14243204 GCTGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGGT
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * ** *
14243269 CCCGCTGCCACAACCCTTGATCCGGTTGGG
129 CCTGCTGCCACAACCCTCGATCCGACTGGA
* * *
14243299 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14243364 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTATCGATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * ** * *
14243429 TACTGTCGTAACCCTCGGTCCGA-TCCGA
131 TGCTGCCACAACCCTCGATCCGACT-GGA
* * * * * * *
14243457 TCTTAGAC-TGAGACTGAACTCCGTATGCATAAGCCAACCCATGGAACGAGCGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14243521 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGGTC
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
14243586 CCGCTACCACAACCCTCGATCCGGA-TGGG
130 CTGCTGCCACAACCCTCGATCC-GACTGGA
* * *
14243615 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * *
14243680 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCATGCTGCCAATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
14243745 TGCTGCCGCAACCCTCAGTTCAGTC-CGA
131 TGCTGCCACAACCCTC-GATCCGACTGGA
*
14243773 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14243801 TTAGATTGGG
Statistics
Matches: 1042, Mismatches: 221, Indels: 60
0.79 0.17 0.05
Matches are distributed among these distances:
156 62 0.06
157 70 0.07
158 584 0.56
159 321 0.31
160 5 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCCGACTGGA
Found at i:14243301 original size:317 final size:317
Alignment explanation
Indices: 14242350--14243800 Score: 1965
Period size: 317 Copynumber: 4.6 Consensus size: 317
14242340 AACTCCGTAT
* * *
14242350 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * *
14242415 CCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCAATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
14242480 TGCTGCCACAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
* * * * * * * *
14242545 CCCACGAAACGAGTGTGTGGGCACTGAGCCGACTGAAGAGGCATAATGCGCAAGCCGGGGATTGG
196 CCCACGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
** ** * * *
14242610 CCCGGTCTGCCTCTGTGTGCTGCCAGTCCCGCTGCCACAACCATCGATCCGGCTAGG
261 CCCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
* * *
14242667 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* *** * * *
14242732 TCGGTTAAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
14242796 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAA
131 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
* * * *
14242860 CCCACGAAACAAGCGTGCAGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGA
196 CCCACGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
* * *
14242925 CCCGGTCCCCCTCTACGTGCTGCCGATCCCGCTGCCACAACCCTTGATCCGACTGGG
261 CCCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
* *
14242982 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * **
14243047 CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
14243112 TGCTGTCGCAACTCTCAGTCCGGTCTGATTTTAGACTAGAAATGAACTCCGTATGCATAAGTCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
* * * * *
14243177 CCCACGAAATGAGAGTGCGGGTGCTAAGCTGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
196 CCCACGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
* ** * * *
14243242 CCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTTGATCCGGTTGGG
261 CCCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
*
14243299 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * *
14243364 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * * * * *
14243429 TACTGTCGTAACCCTCGGTCCGATCCGATCTTAGACT-GAGACTGAACTCCGTATGCATAAGCCA
131 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAG-GAATGAACTCCGTATGCATAAGTCA
* * * * *
14243493 ACCCATGGAACGAGCGTGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATTG
195 ACCCACGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCG
* * *
14243558 GCCCGGTCCCCC-CTACGTGCTGTCGGTCCCGCTACCACAACCCTCGATCCGGATGGG
260 GCCCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
*
14243615 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
** * * * *
14243680 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCATGCTGCCAATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
14243745 TGCTGCCGCAACCCTCAGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
14243801 TTAGATTGGG
Statistics
Matches: 992, Mismatches: 138, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
315 200 0.20
316 344 0.35
317 448 0.45
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
CCCGGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
Found at i:14243803 original size:26 final size:26
Alignment explanation
Indices: 14243774--14243826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14243764 TCAGTCCGAT
14243774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14243800 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14243826 C
1 C
14243827 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14244406 original size:350 final size:353
Alignment explanation
Indices: 14243742--14244420 Score: 841
Period size: 350 Copynumber: 1.9 Consensus size: 353
14243732 ATGCTGCCAA
* *
14243742 TCCTGCTGCCGCAACCCTCAGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAT
1 TCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
* * * *
14243807 TGGGGATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGGGTGCGGGCACTCAGCCGACCGA
66 TGGGAATGAA--CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGA
* * * * **
14243872 AGAGGCATAATGCGCAAGTCGGGGATCTGCCTGGTCCCTCTTTGCGTGCTGTCGATCCCACTGCC
129 AGAGGCAGAATGCGCAAGACGGGGATCAGCCCGGTCCCTCCCTGCGTGCTGTCGATCCCACTGCC
* * * * *
14243937 ACAACCCTCGGTCCTGCTGGGGCTTAGACAAGAAATGAACTCCGTATGCCTAAGCCAACCCACGA
194 ACAACCCTCGGTCCGGCTGGAGCTCAGACAAGAAATGAACACCGTATGCCTAAGCCAACCCACAA
* * * * *
14244002 AACGAGCGTGCGTGCGCTCTGCCGGCCGAAAAGGCCGAATGCACAAGTCGGGGATCAGCCCGATC
259 AACGAGCGTGCGGGCACTCAGCCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCAGCCCGATC
14244067 CCCCCTACATGTTGTAGATCCTACTGCTGG
324 CCCCCTACATGTTGTAGATCCTACTGCTGG
* * * * *
14244097 TCCTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAGAC
1 TCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-
* ** *
14244162 AT-GGAATGAA-C-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGA
65 ATGGGAATGAACCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAA
* *
14244224 GAGGCAGAATGCGCAAGACGGGGATCAGCCCGGTCCC-CCCTGCGTGCTGTCGATCCTACTGCCG
130 GAGGCAGAATGCGCAAGACGGGGATCAGCCCGGTCCCTCCCTGCGTGCTGTCGATCCCACTGCCA
* * * ** * * *
14244288 CAACCCTTGGTTCGGTCT-GATCTCAGACTGGGAATGAACACCGTATGCCTAAGTCAACTCACAA
195 CAACCCTCGGTCCGG-CTGGAGCTCAGACAAGAAATGAACACCGTATGCCTAAGCCAACCCACAA
* * * * *
14244352 AACGAGCGTGCGGGCACTGAGCCGGCC-AGAGAGGCATAATG-AGCAAGCCGGGGATCGGCCCGG
259 AACGAGCGTGCGGGCACTCAGCCGGCCGA-AAAGGCAGAATGCA-CAAGCCGGGGATCAGCCCGA
14244415 TCCCCC
322 TCCCCC
14244421 TCTGCGTGCT
Statistics
Matches: 274, Mismatches: 46, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
349 2 0.01
350 126 0.46
351 79 0.29
352 1 0.00
355 65 0.24
356 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (353 bp):
TCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
TGGGAATGAACCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAG
AGGCAGAATGCGCAAGACGGGGATCAGCCCGGTCCCTCCCTGCGTGCTGTCGATCCCACTGCCAC
AACCCTCGGTCCGGCTGGAGCTCAGACAAGAAATGAACACCGTATGCCTAAGCCAACCCACAAAA
CGAGCGTGCGGGCACTCAGCCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCC
CCCTACATGTTGTAGATCCTACTGCTGG
Found at i:14244524 original size:159 final size:156
Alignment explanation
Indices: 14244154--14244595 Score: 509
Period size: 159 Copynumber: 2.8 Consensus size: 156
14244144 AATTTCGTAT
* *
14244154 GCTTAGACATGGAATGAA---CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 GCTTAGACATGGAATGAACCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
* * *
14244216 CGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
* * * *
14244281 ACTGCCGCAACCCTTGGTTCGGTCTGA
130 ACTACCACAACCCTTGGTTCCGACTGA
* * * * * *
14244308 TCTCAGAC-TGGGAATGAACACCGTATGCCTAAGTCAACTCACAAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAAC-CCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * * *
14244372 GCCGGCCAGAGAGGCATAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGT
64 GCCGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * *
14244437 CCCGCTACCAC-AGCCTTCGG-TCCGACTGGG
127 CCCACTACCACAACCCTT-GGTTCCGACT-GA
* * *
14244467 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCATTCAG
1 GCTTAGACATGGAATGAAC-CCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * *
14244532 CCGATCGAAGAGGCAGAATGCGCAAGCCGGAGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
65 CCGGTCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
14244596 TTGCTGTCGC
Statistics
Matches: 238, Mismatches: 40, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
153 1 0.00
154 14 0.06
158 105 0.44
159 117 0.49
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.16
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
CGGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCCA
CTACCACAACCCTTGGTTCCGACTGA
Found at i:14244655 original size:26 final size:26
Alignment explanation
Indices: 14244626--14244702 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
14244616 CTAGTCTGAT
*
14244626 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14244652 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14244678 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14244703 TCCTAAGTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14245291 original size:159 final size:153
Alignment explanation
Indices: 14244887--14245351 Score: 456
Period size: 154 Copynumber: 3.0 Consensus size: 153
14244877 GAACTCCATG
* *
14244887 TGCTTA-AACATGGAATGAAC-CCCGTATGCCTAAGCTAACTCACGAAAGGAGCGTGCGGGGGCT
1 TGCTTAGAA-ATGGAATGAACTCCC-TATGCCTAAGCTAACCCACGAAAGG-GCGTGCGGGCGCT
* ** * * * * * * *
14244950 CAGCCGGTTAGAGAGGTAGAAAGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTACTATCG
63 CAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGAT-CCCCCCTGCGTGCTGTCG
* *
14245015 ATCCTACTGCCGCAACCCTCGGTCCAA
127 ATCCTGCTGCCACAACCCTCGGTCCAA
* ** * * *
14245042 T-CTTAG-ACTGGGAATGAACTCTGTATGCCTAAG-TCAACCCACAAAATGAGCGTGCGGGCCCT
1 TGCTTAGAAAT-GGAATGAACTCCCTATGCCTAAGCT-AACCCACGAAA-GGGCGTGCGGGCGCT
* * * * * * * *
14245104 GAGCCAACCGAAAAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTTTGCATGCTGTCG
63 CAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCG
*
14245169 GTCCTGCTGCCACAACCCTCGGTCCAA
127 ATCCTGCTGCCACAACCCTCGGTCCAA
* *
14245196 CTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTACGGGTG
1 -T---GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAA-GGGCGTGCGGGCG
* *
14245261 CTCAGCCGATCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCCCGATCCCCCCTGCGTGCTG-C
61 CTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTC
*
14245325 TTATCCTGCTGCCACAACCCTCGGTCC
126 -GATCCTGCTGCCACAACCCTCGGTCC
14245352 GGTTCGATCT
Statistics
Matches: 246, Mismatches: 50, Indels: 25
0.77 0.16 0.08
Matches are distributed among these distances:
153 7 0.03
154 109 0.44
155 4 0.02
157 1 0.00
158 32 0.13
159 90 0.37
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (153 bp):
TGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAAGGGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCAA
Found at i:14245389 original size:26 final size:26
Alignment explanation
Indices: 14245360--14245412 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14245350 CCGGTTCGAT
*
14245360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
14245386 CTTAGACTGAGACTGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14245412 C
1 C
14245413 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14245550 original size:184 final size:184
Alignment explanation
Indices: 14245215--14245570 Score: 437
Period size: 184 Copynumber: 1.9 Consensus size: 184
14245205 AGAAATGGAA
* * *
14245215 TGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTACGGGTGCTCAGCCGATCGGAGAGGC
1 TGAACTCCCTATGCATAAGCTAACCCACGAAACGAGCGTACGGGTGCTCAGCCGATCGAAGAGGC
** ** * * ** **
14245280 AGAATGTGCAAGCTGGGGATCAGCCCGATCCCCCCTGCGTGCTGCTTATCCTGCTGCCACAACCC
66 AGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTCCGTGCTACCGATCCCACTGCCACAACCC
* * * *
14245345 TCGGTCCGGTTCGATCTTAGAC-TGGGAATGAACTCCGTATGCTTAGACTGAGAC
131 TCGATCCGGATCGAGCTTAGACAT-GGAATGAACTCCCTATGCTTAGACTGAGAC
* * *
14245399 TGAACTCCGTATGCATAAG-TCAACCCACGAAACGAGCGTACGGGTGCTGAGCCGGTCGAAGAGG
1 TGAACTCCCTATGCATAAGCT-AACCCACGAAACGAGCGTACGGGTGCTCAGCCGATCGAAGAGG
* * * *
14245463 CATAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTCCGTGCTACCGGTCCCACTGCCACAACC
65 CAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTCCGTGCTACCGATCCCACTGCCACAACC
* * *
14245528 CTCGATTCGGATGGGGCTTAGACATGGAATGAACTCCCTATGC
130 CTCGATCCGGATCGAGCTTAGACATGGAATGAACTCCCTATGC
14245571 CTAAGCCAAC
Statistics
Matches: 143, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
183 1 0.01
184 141 0.99
185 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (184 bp):
TGAACTCCCTATGCATAAGCTAACCCACGAAACGAGCGTACGGGTGCTCAGCCGATCGAAGAGGC
AGAATGCACAAGCCAGGGATCAGCCCGATCCCCCCTCCGTGCTACCGATCCCACTGCCACAACCC
TCGATCCGGATCGAGCTTAGACATGGAATGAACTCCCTATGCTTAGACTGAGAC
Found at i:14245679 original size:342 final size:342
Alignment explanation
Indices: 14245043--14245779 Score: 942
Period size: 342 Copynumber: 2.1 Consensus size: 342
14245033 TCGGTCCAAT
* * *
14245043 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCCCTGAGC
1 CTTAGACTGGG-ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCCCTGAGC
* ** * * **
14245108 CAACCGAAAAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTTTGCATGCTGTCGGTCC
65 CAACCGAAAAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTCCATGCTACCGGTCC
** *
14245173 TGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCTAA
130 CACTGCCACAACCCTCGGTCCAACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * * * *
14245238 CCCACGAAACGGGCGTACGGGTGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCTGGGGATCAG
195 CCCACAAAACGGGCGTACGGGCACCCAGCCGATCGAAGAGGCAGAATATGCAAGCTAGGGATCAG
* * *
14245303 CCCGATCCCCCCTGCGTGCTGCTTATCCTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACT
260 CCCGATCCCCCCTGCATGCTGCTGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACT
14245368 GGGAATGAACTCCGTATG
325 GGGAATGAACTCCGTATG
* * * **
14245386 CTTAGACTGAGACTGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGC
1 CTTAGACTGGGA-TGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCCCTGAGC
*** * * *
14245451 CGGTCGAAGAGGCATAATGCACAAGCCAGGGATCGGCCCGGTCCCCC-CTCCGTGCTACCGGTCC
65 CAACCGAAAAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTCCATGCTACCGGTCC
* ** *
14245515 CACTGCCACAACCCTCGATTCGGA-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CACTGCCACAACCCTCG-GTCCAACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
14245579 ACCCCCAAAACGGGCGTGCGGGCACCCAGTCGGTCGAAGAGGCAGAATATGCAAG-TCAGGGATC
194 ACCCACAAAACGGGCGTACGGGCACCCAGCCGATCGAAGAGGCAGAATATGCAAGCT-AGGGATC
* * * * *
14245643 GGCCCGGTCCCCCCTGCATGCT-ATCGATCTTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAG
258 AGCCCGATCCCCCCTGCATGCTGCT-GATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAG
*
14245707 ATTGGGAATGAACTCCGTATG
322 ACTGGGAATGAACTCCGTATG
* *
14245728 CTTAGACTGTGGATGAACTCTGTATGCCGAAGTCAACCCATGAAACGAGCGT
1 CTTAGACTG-GGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
14245780 GCAGGGGCTC
Statistics
Matches: 336, Mismatches: 53, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
341 2 0.01
342 235 0.70
343 99 0.29
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (342 bp):
CTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCCCTGAGCC
AACCGAAAAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTCCATGCTACCGGTCCC
ACTGCCACAACCCTCGGTCCAACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACGGGCGTACGGGCACCCAGCCGATCGAAGAGGCAGAATATGCAAGCTAGGGATCAGC
CCGATCCCCCCTGCATGCTGCTGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:14253138 original size:11 final size:11
Alignment explanation
Indices: 14253122--14253154 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14253112 CGGTTAGGCT
14253122 CTCCGACGATG
1 CTCCGACGATG
*
14253133 CTCCGATGATG
1 CTCCGACGATG
14253144 CTCCGACGATG
1 CTCCGACGATG
14253155 GTGCCCCGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14253776 original size:26 final size:26
Alignment explanation
Indices: 14253724--14253776 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14253714 CCGATCCGAT
*
14253724 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
* *
14253750 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
14253776 C
1 C
14253777 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:14254141 original size:26 final size:26
Alignment explanation
Indices: 14254103--14254152 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14254093 CCGGTCTGAT
*
14254103 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14254129 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
14254153 GGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14254491 original size:159 final size:158
Alignment explanation
Indices: 14254128--14254630 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 158
14254118 AACTTCGTAT
*
14254128 GCTTAGACATGGAATGAACTCCGTAGGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14254193 CCAGTCGGAGAGGTAGAATACGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCT
66 CCAGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCT
* * *
14254258 TGCTGTCACAACCCTCGGTGTGGTCTGA
131 CGCTGCCACAACCCTCGGTCTGGTCTGA
* * * * * * *
14254286 TCTTAGAC-TGTGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGTGTGTGCGGGCGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** *
14254350 GCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCTCTGCTGCATGCTGTCGAT
65 GCCAGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCC-CCCCTACATGCTGTCGAT
* *
14254415 CTCGCTGCCATAACCCTCGGTCTGG-CTGGG
129 CTCGCTGCCACAACCCTCGGTCTGGTCT-GA
* * * * ***
14254445 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCATCCCATGAAACG-GACGTGCAACCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * * *** *
14254509 ACC-GGCCAGAGAGGCAGAATGCGCAAGTTAGGGATCGACCCGGTCCCCCCTACGTGCTG-CTGA
65 GCCAGTCGA-AGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGTC-GA
* * ** **
14254572 TC-CTGCTACCGCAACCCTCGGTCCAGTCCAA
128 TCTC-GCTGCCACAACCCTCGGTCTGGTCTGA
*
14254603 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14254631 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 153 0.55
159 119 0.43
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCT
CGCTGCCACAACCCTCGGTCTGGTCTGA
Found at i:14254640 original size:26 final size:26
Alignment explanation
Indices: 14254604--14254656 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14254594 CCAGTCCAAT
14254604 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14254630 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14254656 C
1 C
14254657 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14256219 original size:26 final size:26
Alignment explanation
Indices: 14256183--14256235 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14256173 CCAGTCCGAT
14256183 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
14256209 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14256235 C
1 C
14256236 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:14256556 original size:368 final size:354
Alignment explanation
Indices: 14255645--14256576 Score: 1014
Period size: 356 Copynumber: 2.6 Consensus size: 354
14255635 GATCCCGCTG
** * *
14255645 CCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * *
14255710 GAAACGGGCGTGCGGGTGCTCAGCCGGCCCGAGAGGCAGAA--TACGTAAGTCGAGTATCGACCC
66 GAAACGAGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGTAC--AAGTCGGGGATCGGCCC
* * * * * * *
14255773 CGTCCCCCCTGCGTACAATCGATCCTGCTGCCGCAACCCTCGAACCGGTCTGATCTTAGACTGGG
129 GGTCCCCTCTGCGTAC-TTCGAT-CTGCTACTGCAACCCTCGATCCGATCTGATCTTAGACTGGG
* *
14255838 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTGTGCCTAAGTCAACCCATGAAACGAGC
192 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGC
** * * * * **
14255903 GTACGGGCGCTCAGTCGATCAGAAAGGTCGATCGGAGAGGCATAATGTGCAAACCGGGGATCAGC
257 GTACGGGAACTCAGCCGACCAGAAAGGCCGATCGGAAAGGCATAATACGCAAACCGGGGATCAGC
*
14255968 CCGATCCCCCTCTACATGCTGTCGGTCCTGCTA
322 CCGATCCCCCTCTACATACTGTCGGTCCTGCTA
* * * *
14256001 CCACAACCCTCGGTCCGACTGGGGCTTAGAGATGGAATGAACTCCGTATGGCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * *
14256066 GAAACGAGCGTGCGGGTGCTAAGTCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGG
66 GAAACGAGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGTACAAGTCGGGGATCGGCCCGG
* * * *
14256131 TCCCCTCTGCGTGCTACTGATC--CTACTGTCGTAACCCTAGATCC-AGTCCGATCTTAGACTGG
131 TCCCCTCTGCGTACTTC-GATCTGCTACTG-C--AACCCTCGATCCGA-TCTGATCTTAGACTGG
*
14256193 GAATGAACACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAG
191 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAG
* * *
14256258 CGTGCGGGAACTCAGCCGACC-GAAAAGGCCGGAT-GGAAAGGCATAATACGTAAGCCGGGGATC
256 CGTACGGGAACTCAGCCGACCAG-AAAGGCC-GATCGGAAAGGCATAATACGCAAACCGGGGATC
** * *
14256321 AGTTCGGTCCCCCTTTGTGTGCTGTCGATCCCACTGTCGGTCCTGCTA
319 AGCCCGATCCCCC------T-CT-AC-AT---ACTGTCGGTCCTGCTA
* * * *
14256369 TCACAACTCTCAGTCCGGCTGGGGCTTAGACACGGAATGAACTCCGTATGCCTAAGTCAACCCAC
1 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * *
14256434 GAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAAAATGTACAAATTGGGGATCGGCCCGG
66 GAAACGAGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGTACAAGTCGGGGATCGGCCCGG
* * *
14256499 TCCCCTCTGCGTTCTGTCGATCTTGCTACTGCAACCCTCGGTCCGATTTGATCTTAGACTGGGAA
131 TCCCCTCTGCGTACT-TCGATC-TGCTACTGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
14256564 TGAACTCCGTATG
194 TGAACTCCGTATG
14256577 ACTAAGTTAA
Statistics
Matches: 474, Mismatches: 76, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
353 4 0.01
354 1 0.00
355 3 0.01
356 265 0.56
357 3 0.01
358 1 0.00
362 1 0.00
363 2 0.00
364 1 0.00
365 2 0.00
368 182 0.38
369 2 0.00
370 1 0.00
371 6 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (354 bp):
CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGTACAAGTCGGGGATCGGCCCGG
TCCCCTCTGCGTACTTCGATCTGCTACTGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTAC
GGGAACTCAGCCGACCAGAAAGGCCGATCGGAAAGGCATAATACGCAAACCGGGGATCAGCCCGA
TCCCCCTCTACATACTGTCGGTCCTGCTA
Found at i:14256647 original size:158 final size:158
Alignment explanation
Indices: 14256392--14256894 Score: 517
Period size: 160 Copynumber: 3.2 Consensus size: 158
14256382 TCCGGCTGGG
** *
14256392 GCTTAGACACGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* *** * *
14256457 TCGGTCGGAGAGGTAAAATGTACAAATTGGGGATCGGCCCGGTCCCCTCTGCGTTCTGTCGATCT
66 TCGGTCGGAGAGGTAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCC
* * *
14256522 TGCTACTGCAACCCTCGGTCCGATTTGA
131 TGCTGCCGCAACCCTCGGTCCGATTCGA
* * * * *
14256550 TCTTAGACTGGGAATGAACTCCGTATGACTAAGTTAACCCACGAAATGAGCATGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** * * * * *
14256615 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCTTACTGCGTGCTGTC-ACT
66 TCGGTCGGAGAGGTAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCT-CTGCGTGCTGTCGA-T
* * * * * *
14256679 CCCCGCTGCCACAACCCTCGATCCGGTTGGG
129 -CCTGCTGCCGCAACCCTCGGTCCGATTCGA
* * * * *
14256710 GCTTAGACAT-GGAATGAACCCCCTATGCCTAAGCCAACCGACGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * ** **
14256774 GTAGGTCGGAGAGGTAGAATGCACAAGCCAGGTATCGGCCCGATCCCC-CTATGTGCTACCGATC
65 GTCGGTCGGAGAGGTAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATC
* * *
14256838 CTGCTGCCGTAACCCTCGGTCCGATCCAA
130 CTGCTGCCGCAACCCTCGGTCCGATTCGA
14256867 GCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
14256895 TTAGACTAGG
Statistics
Matches: 272, Mismatches: 67, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 45 0.17
158 103 0.38
159 13 0.05
160 109 0.40
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGTAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCGATTCGA
Found at i:14256786 original size:160 final size:158
Alignment explanation
Indices: 14256354--14256821 Score: 474
Period size: 158 Copynumber: 2.9 Consensus size: 158
14256344 GTCGATCCCA
* * * * * *
14256354 CTGTCGGTCCTGCTATCACAACTCTC-AGTCCGGCTGGGGCTTAGACACGGAATGAACTCCGTAT
1 CTGTCGATCCCGCTACCACAACCCTCGA-TCCGGTTGGGGCTTAGACATGGAATGAACTCCGTAT
* * *
14256418 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAAAATGTACAAA
65 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAAAATGCACAAG
** *
14256483 TTGGGGATCGGCCCGGTCCCCTCTGCGTT
130 CCGGGGATCGGCCCGGTCCCCTCTGCGTG
** ** * * * **
14256512 CTGTCGATCTTGCTACTGCAACCCTCGGTCCGATTTGATCTTAGAC-TGGGAATGAACTCCGTAT
1 CTGTCGATCCCGCTACCACAACCCTCGATCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTAT
* * * * * ** * * *
14256576 GACTAAGTTAACCCACGAAATGAGCATGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAG
65 GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAAAATGCACAAG
* *
14256641 CCGGGGATCAGCCCGGTCCCTTACTGCGTG
130 CCGGGGATCGGCCCGGTCCCCT-CTGCGTG
* * *
14256671 CTGTC-ACTCCCCGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACCCCCTA
1 CTGTCGA-T-CCCGCTACCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * *
14256735 TGCCTAAGCCAACCGACGAAATGGGCGTGCGGGCGCTCAGTAGGTCGGAGAGGTAGAATGCACAA
64 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAAAATGCACAA
* * *
14256800 GCCAGGTATCGGCCCGATCCCC
129 GCCGGGGATCGGCCCGGTCCCC
14256822 CTATGTGCTA
Statistics
Matches: 242, Mismatches: 62, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
158 120 0.50
159 12 0.05
160 109 0.45
161 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
CTGTCGATCCCGCTACCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAAAATGCACAAGC
CGGGGATCGGCCCGGTCCCCTCTGCGTG
Found at i:14256896 original size:26 final size:26
Alignment explanation
Indices: 14256867--14256920 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
14256857 TCCGATCCAA
14256867 GCTTAGACT-GGGAATGAACTCCGTAT
1 GCTTAGACTAGGG-ATGAACTCCGTAT
*
14256893 GCTTAGACTAGGGATGAACTTCGTAT
1 GCTTAGACTAGGGATGAACTCCGTAT
14256919 GC
1 GC
14256921 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAGGGATGAACTCCGTAT
Found at i:14257275 original size:25 final size:26
Alignment explanation
Indices: 14257247--14257298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14257237 CCGGTCCAAT
*
14257247 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
14257272 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
14257298 C
1 C
14257299 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:14258213 original size:26 final size:26
Alignment explanation
Indices: 14258184--14258272 Score: 106
Period size: 26 Copynumber: 3.4 Consensus size: 26
14258174 CCGATCCGAT
14258184 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * * * *
14258210 CTTAGGCTGGGGATAAACTCCATACG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
14258236 CTTAGACTGAGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14258262 CTTAGACTGGG
1 CTTAGACTGGG
14258273 GATCCTGCTG
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14258667 original size:26 final size:26
Alignment explanation
Indices: 14258631--14258683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14258621 CCGGTCTGAT
14258631 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
14258657 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
14258683 C
1 C
14258684 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:14258865 original size:26 final size:26
Alignment explanation
Indices: 14258836--14258888 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14258826 CCAGTCCGAT
14258836 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14258862 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14258888 C
1 C
14258889 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14259347 original size:26 final size:26
Alignment explanation
Indices: 14259318--14259422 Score: 149
Period size: 26 Copynumber: 4.0 Consensus size: 26
14259308 CCGGTCCGAT
14259318 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14259344 CTTAGACTGAGG-ATAAACTCCGTACG
1 CTTAGACTG-GGAATGAACTCCGTATG
* *
14259370 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14259396 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14259422 C
1 C
14259423 CTAAGTCAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.01
26 65 0.96
27 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14259396 original size:52 final size:52
Alignment explanation
Indices: 14259318--14259419 Score: 168
Period size: 52 Copynumber: 2.0 Consensus size: 52
14259308 CCGGTCCGAT
*
14259318 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATAAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTATGCTTAGACTGAGGATAAACTCCGTACG
* * *
14259370 CTTAGACTGAGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTATGCTTAGACTGAGGATAAACTCCGTA
14259420 TGCCTAAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (52 bp):
CTTAGACTGAGAATGAACTCCGTATGCTTAGACTGAGGATAAACTCCGTACG
Found at i:14264281 original size:55 final size:55
Alignment explanation
Indices: 14264174--14264282 Score: 137
Period size: 55 Copynumber: 2.0 Consensus size: 55
14264164 CCACCTAAGT
* * * * **
14264174 CCCTTGCGGGACTAGCATGATGGTTGGTGTCAACCATGCATGCGGGGGACTGGTC
1 CCCTTACGGGACTAGCATAAAGGTCGGTGTCAACCATGCATGCGGGCAACTGGTC
* **
14264229 CCCTTACGGGACTAGCATAAAGGTCGGTGTCAACCTTGTGTGCGGGCAACTGGT
1 CCCTTACGGGACTAGCATAAAGGTCGGTGTCAACCATGCATGCGGGCAACTGGT
14264283 GTGCTGCAGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.18, C:0.24, G:0.34, T:0.24
Consensus pattern (55 bp):
CCCTTACGGGACTAGCATAAAGGTCGGTGTCAACCATGCATGCGGGCAACTGGTC
Found at i:14265407 original size:157 final size:155
Alignment explanation
Indices: 14265139--14265618 Score: 419
Period size: 158 Copynumber: 3.0 Consensus size: 155
14265129 CCGACTGGGG
* * * * *
14265139 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCCCCCATC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14265204 GGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCCTA
66 GGCCGAAAAGGCAAAATGCGCAAGCTAAGGATCGGCCCGGT-CCCCCTGCGTGCTGTC-ATCCTA
*
14265269 CTGCCGCAACCCTTGGTCCGGTCTGAT
129 CTGCCGCAACCCTCGGTCCGGTCTGAT
* * * *
14265296 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
14265360 CTGGCCGAAAAGGCATAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTTTGCGTGCTGTCGTCC
65 C-GGCCGAAAAGGCAAAATGCGCAAGCTAAGGATCGGCCCGGTCCCCC--TGCGTGCTGTCATCC
* * * * **
14265425 CAGTGCCACAACCCTCGGTCC-GACTGGGG
127 TACTGCCGCAACCCTCGGTCCGGTCT-GAT
* * * * * *
14265454 CTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCAACGAAACGGGTGTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
** * * * * * * * *
14265519 CGATC-AGATAGGTAAAATGCACAAG-TCAAGGATTGGCTCGATCCCCTCTACGTGCTGCCGATC
65 CGGCCGA-AAAGGCAAAATGCGCAAGCT-AAGGATCGGCCCGGTCCCC-CTGCGTGCTGTC-ATC
* * *
14265582 CTGCTGTCGCAACCCTCAGTCCGGTCTGAT
126 CTACTGCCGCAACCCTCGGTCCGGTCTGAT
14265612 CTTAGAC
1 CTTAGAC
14265619 TAGGAAAGAA
Statistics
Matches: 254, Mismatches: 57, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 73 0.29
158 163 0.64
159 17 0.07
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
GGCCGAAAAGGCAAAATGCGCAAGCTAAGGATCGGCCCGGTCCCCCTGCGTGCTGTCATCCTACT
GCCGCAACCCTCGGTCCGGTCTGAT
Found at i:14265508 original size:158 final size:157
Alignment explanation
Indices: 14265116--14265500 Score: 454
Period size: 158 Copynumber: 2.4 Consensus size: 157
14265106 GTCCTGGTGG
*
14265116 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * *
14265181 AAACGAGCGTACGGGCCCCCATCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTC
66 AAACGAGCGTGCGGGCCCCAAGCGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTC
*
14265246 CCCCCTGCGTGCTGTCAATCCTACTGC
131 CCCCCTGCGTGCTGTCAATCCCACTGC
* * * ** *
14265273 CGCAACCCTTGGTCCGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CACAACCCTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* ** * * * *
14265336 CAAAACGAGCGTGCGGGTGCTAAGCTGGCCGAAAAGGCATAATGCGCAAG-CTGAGGATCGGCCC
64 CGAAACGAGCGTGCGGGCCCCAAGC-GGCCGAAAAGGCAGAATGCGCAAGCCAG-GGATCAGCCC
* * *
14265400 GGTCCCCCTTTGCGTGCTGTC-GTCCCAGTGC
127 GGTCCCCC-CTGCGTGCTGTCAATCCCACTGC
* * *
14265431 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCAACG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
14265496 AAACG
66 AAACG
14265501 GGTGTGCGAG
Statistics
Matches: 187, Mismatches: 34, Indels: 13
0.80 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 73 0.39
158 101 0.54
159 12 0.06
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.17
Consensus pattern (157 bp):
CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCCCCAAGCGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTC
CCCCCTGCGTGCTGTCAATCCCACTGC
Found at i:14265538 original size:158 final size:157
Alignment explanation
Indices: 14265116--14265543 Score: 425
Period size: 158 Copynumber: 2.7 Consensus size: 157
14265106 GTCCTGGTGG
*
14265116 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * * * *
14265181 AAACGAGCGTACGGGCCCCCATCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTC
66 AAACGAGCGTGCGGGCGCTCAGCCGCCAGAAAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTC
*
14265246 CCCCCTGCGTGCTGTCAATCCTACTGC
131 CCCCCTGCGTGCTGTCAATCCCACTGC
* * * ** *
14265273 CGCAACCCTTGGTCCGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CACAACCCTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * *
14265336 CAAAACGAGCGTGCGGGTGCTAAGCTGGCC-GAAAAGGCATAATGCGCAAG-CTGAGGATCGGCC
64 CGAAACGAGCGTGCGGGCGCTCAGC-CGCCAG-AAAGGCAAAATGCGCAAGCCAG-GGATCAGCC
* * *
14265399 CGGTCCCCCTTTGCGTGCTGTC-GTCCCAGTGC
126 CGGTCCCCC-CTGCGTGCTGTCAATCCCACTGC
* * *
14265431 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCAACG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * *
14265496 AAACGGGTGTGCGAGCGCTCAGCCGATCAGATAGGTAAAATGCACAAG
66 AAACGAGCGTGCGGGCGCTCAGCCG-CCAGAAAGGCAAAATGCGCAAG
14265544 TCAAGGATTG
Statistics
Matches: 217, Mismatches: 44, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 75 0.35
158 128 0.59
159 13 0.06
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (157 bp):
CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGCCAGAAAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTC
CCCCCTGCGTGCTGTCAATCCCACTGC
Found at i:14266702 original size:26 final size:26
Alignment explanation
Indices: 14266666--14266718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14266656 GTTCGCTTAG
14266666 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTTCATTCCTA-GTCTAA
*
14266692 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
14266718 G
1 G
14266719 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:14268356 original size:26 final size:26
Alignment explanation
Indices: 14268326--14268378 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14268316 GTTGGCTTAC
*
14268326 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
14268352 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
14268378 G
1 G
14268379 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:14268908 original size:26 final size:26
Alignment explanation
Indices: 14268878--14268930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14268868 GTTGGCTTAG
14268878 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATATGAAGTTCATTCCCA-GTCTAA
*
14268904 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
14268930 G
1 G
14268931 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:14270172 original size:26 final size:26
Alignment explanation
Indices: 14270124--14270174 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14270114 GTTGACTTAG
**
14270124 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGAACATCCCCAGTCTAA
* *
14270150 GCATACGGAGAACATTCCTAGTCTA
1 GCATACGGAGAACATCCCCAGTCTA
14270175 GGATCAGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGAACATCCCCAGTCTAA
Found at i:14270502 original size:26 final size:25
Alignment explanation
Indices: 14270466--14270517 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14270456 GTTGGCTTAG
14270466 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
14270492 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
14270517 G
1 G
14270518 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:14271676 original size:26 final size:26
Alignment explanation
Indices: 14271646--14271699 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14271636 GTTGGCTTAG
14271646 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14271672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14271698 GC
1 GC
14271700 TCAAATCGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.