Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 107 of 402
Found at i:14271811 original size:184 final size:184
Alignment explanation
Indices: 14271488--14271862 Score: 477
Period size: 184 Copynumber: 2.0 Consensus size: 184
14271478 GGTTGATTAG
* *
14271488 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGACAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAATCGAGGGTTACGACAACAGGATCGACA
* * *** * * * ***
14271553 GCACCCAGGGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCACTCTGACCGGTTGAGTGCC
66 GCACACAGGGGGGACCGAAACGATCCCTGGCTTGTGCATTCTGCCACTCAGACCAGCTGACCACC
*
14271618 TGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * **
14271672 GCATACGGAGTTCATTCCCAGTCTAAGCTCAAATCGGATCGAGGGTTACGACAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAATCGAGGGTTACGACAACAGGATCGACA
* * *
14271737 GCACATAGGGGGGACCGAAACGAT-CCTCGGCTTGTGCATTCTGCCTCTCCAG-TCAGCTGACCA
66 GCACACAGGGGGGACCGAAACGATCCCT-GGCTTGTGCATTCTGCCACT-CAGACCAGCTGACCA
*
14271800 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
14271856 GCA-ACAG
1 GCATACAG
14271863 TCGGACCGAG
Statistics
Matches: 162, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
183 6 0.04
184 154 0.95
185 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAATCGAGGGTTACGACAACAGGATCGACA
GCACACAGGGGGGACCGAAACGATCCCTGGCTTGTGCATTCTGCCACTCAGACCAGCTGACCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:14272470 original size:318 final size:323
Alignment explanation
Indices: 14271757--14272523 Score: 852
Period size: 318 Copynumber: 2.4 Consensus size: 323
14271747 GGGACCGAAA
* *
14271757 CGATCCTCGGCTTGTGCATTCTGCCTCTCCAGTC-AGCTGACCA-CCCGTACGCTCGTTTCATGG
1 CGATCCTCGGCTTGTGCATTCTGCCTCTCCAGTCGA-CTGA-GAGCCCGCACGCTCGTTTCATGG
14271820 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGC
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGC
* *
14271885 AGGACCGGCAGCGGGATCGACAGAATGCAGAGAGGTTTCGGGCTGATCCCCGGCTTGCGCATTAT
129 AGGACCGGCAGC--GATCGACAGAATG-AGAGA-G--TCGGGCTGATCCCCGACTTGAGCATTAT
* * * * ** *
14271950 GCCTCTCCGACTGGCTGAGTGCCCGCACGTTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCA
188 GCCACTCCGACTGGCTCAGCGCCCGAACACTCATTTAGTAGGTTGACTTAGGCATACGGAGTTCA
* * *
14272015 TCCCCAATCTAAGATCAGACCAAACGAAGGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGGA
253 TCCCCAATCTAAGATCAGACCAAACCAAAGGTTGCAGCAACAGGATCGACAGCACGTAAGGGGGA
14272080 TCGGGC
318 TCGGGC
* *
14272086 CGATCCTCGGTTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGC-CTGTTTCATGGG
1 CGATCCTCGGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGAGCCCGCACGCTC-GTTTCATGGG
* * ** * *
14272150 TTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAG-T
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGCA
*
14272214 GAGACCGGCAGC-AT-G-CAG-A-G-GACGA-TCGGGTTGATCCCCGACTTGAGCATTATGCCAC
130 G-GACCGGCAGCGATCGACAGAATGAGA-GAGTCGGGCTGATCCCCGACTTGAGCATTATGCCAC
14272272 TCCGA-TCGGCTCAGCGCCCGAACACTCATTTCAGT-GCGTT-ACCTTAGGCATACGGAGTTCAT
193 TCCGACT-GGCTCAGCGCCCGAACACTCATTT-AGTAG-GTTGA-CTTAGGCATACGGAGTTCAT
* * ** * * * *
14272334 TCCCAGTCTAAGATTGGA-TAGGACCAAAGGTTGCGGCAGCAGGATCGACAGCACGTAAGGGGGA
254 CCCCAATCTAAGATCAGACCA-AACCAAAGGTTGCAGCAACAGGATCGACAGCACGTAAGGGGGA
*
14272398 TTGGGC
318 TCGGGC
* * * * **
14272404 CGATCC-CTGGCTTGTGTATTCTGTCTCTCC-GGCTGGCTGAGAGCCCGCACGCTCGTTTTGTGG
1 CGATCCTC-GGCTTGTGCATTCTGCCTCTCCAGTC-GACTGAGAGCCCGCACGCTCGTTTCATGG
* * *
14272467 GTTGGCTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-AGCAGACCGGACCGAGGGTT
64 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAACAG-TCGGACCGAGGGTT
14272524 ACGGTAGCAA
Statistics
Matches: 377, Mismatches: 46, Indels: 41
0.81 0.10 0.09
Matches are distributed among these distances:
316 1 0.00
317 62 0.16
318 172 0.46
319 4 0.01
320 2 0.01
321 2 0.01
322 1 0.00
323 1 0.00
324 3 0.01
325 1 0.00
326 2 0.01
328 2 0.01
329 123 0.33
330 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (323 bp):
CGATCCTCGGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGAGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGCAG
GACCGGCAGCGATCGACAGAATGAGAGAGTCGGGCTGATCCCCGACTTGAGCATTATGCCACTCC
GACTGGCTCAGCGCCCGAACACTCATTTAGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
CTAAGATCAGACCAAACCAAAGGTTGCAGCAACAGGATCGACAGCACGTAAGGGGGATCGGGC
Found at i:14272885 original size:26 final size:26
Alignment explanation
Indices: 14272849--14272901 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14272839 GTTGGCTTAG
14272849 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
14272875 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14272901 G
1 G
14272902 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14273251 original size:26 final size:26
Alignment explanation
Indices: 14273215--14273267 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14273205 GTTGACTTAG
14273215 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
14273241 GCATACAGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
14273267 G
1 G
14273268 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:14273747 original size:26 final size:26
Alignment explanation
Indices: 14273717--14273769 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14273707 GTTGGTTTAG
14273717 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14273743 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14273769 G
1 G
14273770 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14274125 original size:26 final size:26
Alignment explanation
Indices: 14274095--14274147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14274085 GTTGACTTAG
14274095 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14274121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14274147 G
1 G
14274148 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14275106 original size:9 final size:9
Alignment explanation
Indices: 14275088--14275126 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
14275078 CTGCTGGTGC
*
14275088 GCCTGACGT
1 GCCTGGCGT
14275097 GCCTGGCGT
1 GCCTGGCGT
14275106 GCCTGGCGT
1 GCCTGGCGT
14275115 GCCTGGCGT
1 GCCTGGCGT
14275124 GCC
1 GCC
14275127 CACCCAGGGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.03, C:0.36, G:0.41, T:0.21
Consensus pattern (9 bp):
GCCTGGCGT
Found at i:14278293 original size:17 final size:17
Alignment explanation
Indices: 14278271--14278310 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
14278261 TACCTCAATG
*
14278271 GTCTCCTTGTCTTTCCA
1 GTCTCCTTGCCTTTCCA
14278288 GTCTCCTTGCCTTTCCA
1 GTCTCCTTGCCTTTCCA
14278305 GTCTCC
1 GTCTCC
14278311 AAGCTGCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.05, C:0.40, G:0.12, T:0.42
Consensus pattern (17 bp):
GTCTCCTTGCCTTTCCA
Found at i:14280971 original size:26 final size:26
Alignment explanation
Indices: 14280941--14280993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14280931 GTTGACTTAG
*
14280941 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14280967 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14280993 G
1 G
14280994 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14281808 original size:26 final size:26
Alignment explanation
Indices: 14281778--14281831 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14281768 TGGGTTGACT
* *
14281778 TAGGCATATGCAGTTCATTCGCAGTC
1 TAGGCATACGCAGTTCATTCCCAGTC
*
14281804 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGCAGTTCATTCCCAGTC
14281830 TA
1 TA
14281832 AGATCCGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGCAGTTCATTCCCAGTC
Found at i:14282170 original size:159 final size:158
Alignment explanation
Indices: 14281804--14282309 Score: 380
Period size: 159 Copynumber: 3.2 Consensus size: 158
14281794 ATTCGCAGTC
* * * *
14281804 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACTAGACTGAGGGTTACGGTAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCG
* * * * *
14281869 ACAGCACGCAGAGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTTTTCGACCGGTTGAGC
66 ACAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTTCTCGACCGGCTCAGC
* * *
14281934 ACCCGCACGCCCGTTTCGTGTGTTGGCT
131 ACCCACACGCCCGTTTCGTGGGTTGACT
* * ** * ** *
14281962 TAGGCATAGGGAGTTCATT-CCATGTCTATGCCCCAGTC-GGACCAAGGGTTGTGGCAGTC-GGA
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGCGGCAG-CAGGA
* * * * * *
14282024 -CAGGCAGCATGCAGAGGGGGA-CTGAGTCGTTCCCCGGCTTGCGCATTATGCCTCTCTCG-CTG
63 TC-GACAGCACGCAGA-GGGGACCAG-GCCGATCCCCGGCTTGCGCATTATGCCT-TCTCGACCG
** * *
14282086 GCTCAGGGCCCACACGCTCGTTTTGTGGGTTGACT
124 GCTCAGCACCCACACGCCCGTTTCGTGGGTTGACT
* * * *
14282121 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACTGAGGGTTGCTGTAGCAAGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCG
* ** * * * * * * * * * * * *
14282186 ACAGAACATAGGGTGGGATCGGGCTGAACCCTGGCATACACATTCTGCC-TCTCCGGCCGGCTGA
66 ACAGCACGCAGAG-GGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTTCT-CGACCGGCTCA
* * * *
14282250 GCGCCCATACGCTCGTTTCGTGGGTTGGCT
129 GCACCCACACGCCCGTTTCGTGGGTTGACT
*
14282280 TAGGCATATGGAGTTCATT-CCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG
14282310 CATACGGAGT
Statistics
Matches: 267, Mismatches: 65, Indels: 31
0.74 0.18 0.09
Matches are distributed among these distances:
157 7 0.03
158 63 0.24
159 187 0.70
160 10 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTTCTCGACCGGCTCAGC
ACCCACACGCCCGTTTCGTGGGTTGACT
Found at i:14282312 original size:26 final size:26
Alignment explanation
Indices: 14282283--14282335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14282273 GTTGGCTTAG
*
14282283 GCATATGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
14282309 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
14282335 G
1 G
14282336 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:14282974 original size:856 final size:854
Alignment explanation
Indices: 14281038--14283193 Score: 2411
Period size: 856 Copynumber: 2.5 Consensus size: 854
14281028 GGGCCAATTG
** * * * *
14281038 TCGGCTTGCGCATTCTGCCTCTCTAACCAGCTGAGCACCCACACGCCCATTTCGTGGCTTGCCTT
1 TCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTT
* * * * *
14281103 AGGCATAGGGAGTTCATTTCATGTCTAAGCCCTAGCGGATCGAGGGTTGTGCCAGCGGGACCGGC
66 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGGTTGTGGCAGCGGGACAGGC
* * * ** **
14281168 AGCACGCAGAAGGGGATCGGACCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTG
131 AGCACGCA-AAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCA
* * *
14281233 C-TCGTACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
195 CAT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
14281297 CGGACCGAGGGTTGC-GATAGTAGGATCGATAGCACGCAA-GGGGGACCAGGCTGATCCCCAGCT
259 CGGACTGAGGGTTGCTGATAGCAGGATCGACAG-A-ACAAGGGGGGATCGGGCTGATCCCCGGCT
* ** * *
14281360 TACGGATTTTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCATAGGCAT
322 TACGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * * *
14281425 ACGGAGTTCATTCAATGTCTAAGCATACAGAGTTCATTCCCAGTCTCAGATCAGACCGAATCAAG
387 ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAG
**
14281490 TGTTGCGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGAC
452 CATTGCGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGAC
* **
14281555 TTGTACATTCTACCTCTCCGGTCGACTGAGCGCCCACACGCTAGTTTATGGGTTGGCTTAGGCAT
517 TTGCACATTCTACCTCTCCGACCGACTGAGCGCCCACACGCTAGTTTATGGGTTGGCTTAGGCAT
* *
14281620 ACAGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGGGTTGTGGCAGTAGGACCAGCATCGA
582 ACAAAGTTCATTCCATGTCTAAGCCCCAGCAGAACCGAGGGTTGTGGCAGTAGGACCAGCATCGA
* ** * * **
14281685 CAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGTGTATTACGCATCTCCGGTCGATTGAGC
647 CAGCACGCAGAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTACGCATCTCC-G-CGATCCAGC
* ** ** ** * * *
14281750 ACCCACACACTTGTTTCATGGGTTGACTTAGGCATATGCAGTTCATTCGCAGTCTAGGCATACGG
710 ACCCACACACTCGGCTCAACGCCTGAC-TACGC--ATGCAGTTCATGCGCAGACTAGGCATACGG
* * * *
14281815 AGTTCATTCCCAGTCTAAGATCCGACTAGACTGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
772 AGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCAGGATCGACAACACGCAG
14281880 AGGGGACCAGGCCGATCC
837 AGGGGACCAGGCCGATCC
* * * * *
14281898 TCGGCTTGCGCATTCTGCCTTTTCGACCGGTTGAGCACCCGCACGCCCGTTTCGTGTGTTGGCTT
1 TCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTT
* *
14281963 AGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGGACCAAGGGTTGTGGCAGTC-GGACAG
66 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGGGTTGTGGCAG-CGGGACAG
* * * * * * *
14282027 GCAGCATGCAGAGGGGGACTGAGTCGTTCCCCGGCTTGCGCATTATGCCTCTCTCGCT-GGCTCA
129 GCAGCACGCA-AAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-TCGATCGGCTCA
* * *
14282091 GGGCCCA--CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
192 --GCACATGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
14282154 AGACTGGACTGAGGGTTGCTG-TAGCAAGATCGACAGAACATAGGGTGGGATCGGGCTGAACCCT
255 AGACCGGACTGAGGGTTGCTGATAGCAGGATCGACAGAACA-AGGG-GGGATCGGGCTGATCCCC
* * * **
14282218 GGCATACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCATACGCTCGTTTCGTGGGTTGGCTTAG
318 GGCTTACGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
14282283 GCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGGACCGGAC
383 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC
* * * * ** * *
14282348 CGAGCATTGCGGCAGCAGGACCAGTAGCAGGATCGGTAGCACGCAGGCGGGGACCGGGTCGATCC
448 CAAGCATTGCGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGG-GGGGACCAGGCCGATCC
* * * * * * * *
14282413 CCGGCTTGCGCATTCTGCCTTTCTGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTT
512 CCGACTTGCACATTCTACCTCTCCGACCGACTGAGCGCCCACACGCTAGTTT-ATGGGTTGGCTT
14282478 AGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGGGTTGTGGCAGTAGGATCG
576 AGGCATACAAAGTTCATTCCATGTCTAAGCCCCAG-CAGAACCGAGGGTTGTGGCAGTAGGA-C-
* * * *
14282542 GCAGCGGGATCGACAGCACGCAGAAGGGGATCGGGTTGATCCCCAGCTTGCGCATTATGCCTCT-
638 -CAGC---ATCGACAGCACGCAGAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTACGCATCTC
* * ** * * *
14282606 C-CGA-CCAGC-CTCTC-CGGTCGGCTGAACGCCTG-C-ACGC-T-C-GTTTCATGGGTAGACTT
699 CGCGATCCAGCACCCACACACTCGGCTCAACGCCTGACTACGCATGCAG-TTCATGCGCAGAC-T
**
14282662 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTGTGGCAGCAGGATCG
762 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTACGGCAGCAGGATCG
*
14282726 ACAACACGCAG-GGGTGACCGGGCC-AGTCC
826 ACAACACGCAGAGGG-GACCAGGCCGA-TCC
* *** *
14282755 -CAGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCA-CCGCACGCCCATTTCATGGGTTGGCT
1 TC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCT
* * *
14282818 TAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACGG
65 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGGGTTGTGGCAGCGGGACAG
* * * *
14282883 GCAGCACACAAAGGGGTACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGACGCAG
129 GCAGCACGCAAAGGGG-ACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAG
* * *
14282948 CACATGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
193 CACATGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
14283013 CCAGACTGAGGGTTGCTGCT-GCAGGATCGACAGCACACAAGGGCGGATCGGG-TCGATCCCCGA
258 CCGGACTGAGGGTTGCTGATAGCAGGATCGACAG-A-ACAAGGGGGGATCGGGCT-GATCCCCGG
* * *** * * *
14283076 CTTGCGTATTTTGCCTCTCTACCCTGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGTTTAGGC
320 CTTACGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
14283141 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAATCTAAGAT
385 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
14283194 TTTGAGCCAC
Statistics
Matches: 1082, Mismatches: 180, Indels: 72
0.81 0.13 0.05
Matches are distributed among these distances:
854 4 0.00
855 12 0.01
856 335 0.31
857 114 0.11
858 3 0.00
859 2 0.00
860 91 0.08
861 154 0.14
862 169 0.16
863 66 0.06
864 71 0.07
865 6 0.01
866 3 0.00
867 4 0.00
869 1 0.00
870 47 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (854 bp):
TCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGGTTGTGGCAGCGGGACAGGC
AGCACGCAAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCAC
ATGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
GACTGAGGGTTGCTGATAGCAGGATCGACAGAACAAGGGGGGATCGGGCTGATCCCCGGCTTACG
CATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGCATT
GCGACAGCAGGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGC
ACATTCTACCTCTCCGACCGACTGAGCGCCCACACGCTAGTTTATGGGTTGGCTTAGGCATACAA
AGTTCATTCCATGTCTAAGCCCCAGCAGAACCGAGGGTTGTGGCAGTAGGACCAGCATCGACAGC
ACGCAGAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTACGCATCTCCGCGATCCAGCACCCAC
ACACTCGGCTCAACGCCTGACTACGCATGCAGTTCATGCGCAGACTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACTAGACCGAGGGTTACGGCAGCAGGATCGACAACACGCAGAGGGGACCA
GGCCGATCC
Found at i:14282995 original size:159 final size:158
Alignment explanation
Indices: 14282635--14283165 Score: 537
Period size: 159 Copynumber: 3.4 Consensus size: 158
14282625 GGCTGAACGC
* *
14282635 CTGCACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATC
1 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACC
* * * *
14282699 AGACCGAGGGTTGTGGCAGCAGGATCGACAACACGC-AGGGGTGACCGGGCC-AGTCCCAGGCTT
65 AGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAGGGGT-ACCGGGCCGA-TCCCCGACTT
* * * * * *
14282762 GTGCATTCTGCCTCTCCGGTTGGCTG-AGCA
128 GCGCATTATGCCTCTTCGATCGACTGCAGCA
* * * * * * **
14282792 CCGCACGCCCATTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC
1 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACC
* *
14282856 AGACCGAGGGTTGTGGCAGCGGGA-CGGGCAGCACACAAAGGGGTACCGGGCCGATCCCCGACTT
65 AGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACAC-AAGGGGTACCGGGCCGATCCCCGACTT
14282920 GCGCATTATGCCTCTTCGATCGAC-GCAGCA
128 GCGCATTATGCCTCTTCGATCGACTGCAGCA
*
14282950 CATGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAGATCAGAC
1 C-TGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGAC
* * * * *
14283014 CAGACTGAGGGTTGCT-GCTGCAGGATCGACAGCACACAAGGGCGGATCGGGTCGATCCCCGACT
64 CAGACCGAGGGTTG-TGGCAGCAGGATCGACAGCACACAAGGG-GTACCGGGCCGATCCCCGACT
* * * * *
14283078 TGCGTATTTTGCCTC-TCTA-C-CCTGCTGAGCG
127 TGCGCATTATGCCTCTTCGATCGACTGC--AGCA
* **
14283109 CTCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CT-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
14283166 CATACGGAGT
Statistics
Matches: 309, Mismatches: 47, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
156 5 0.02
157 80 0.26
158 55 0.18
159 166 0.54
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCA
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAGGGGTACCGGGCCGATCCCCGACTTGCG
CATTATGCCTCTTCGATCGACTGCAGCA
Found at i:14283189 original size:26 final size:26
Alignment explanation
Indices: 14283139--14283191 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14283129 GTTGGTTTAG
* *
14283139 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
14283165 GCATACGGAGTTCAATCCCA-ATCTAA
1 GCATACGGAGTTC-ATCCCATATCTAA
14283191 G
1 G
14283192 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:14284570 original size:342 final size:343
Alignment explanation
Indices: 14284111--14284741 Score: 784
Period size: 342 Copynumber: 1.8 Consensus size: 343
14284101 ATCGGCAGCG
* * *
14284111 GGATCGACAGCACGCAGAGGGGGATCGAGCTAATCCTCGACTTATGCATTATGCCTCTCCGGTCG
1 GGATCGACAGCACGCAGAGGGGGATCGAGCCAATCCTCGACTTACGCATTATGCCTCTCCGGCCG
* * * *
14284176 GCTGAGTGCCCGCACGCTCGTTTCGAGGGTTAACTTAGGCATATGGAGTTCATCCCCA-GTCTAA
66 GCTGAGTGCACGCACGCCCATTTCGAGGGTTAACTTAGGCATAGGGAGTTCAT-CCCATGTC-AA
* ** * * *
14284240 GATCGGATCGA-ACTGAGGGATGTGCCAGAAGGATTGGCAGCACACA-AAGGGGACCGGGCCAAT
129 G-CCCCATCCAGACTGAGGGATGTGCCAGAAGGACTGGCAGCACACAGAAGGGGACCGAGCCAAT
* * * * *
14284303 CCCTGGCTTGCACATTCTACCTCTCCGCCCGGTTGAGCGCATGCACGCTCGTTTCATGGGTTGAC
193 CCCCGGCTTGCACATTATACCTCTCCGCCCGGTTCAACGCACGCACGCTCGTTTCATGGGTTGAC
**
14284368 TTAGGCATATGGAGTTCATTCCCAGTCTAAGAATACAGAGTTCATTCCTAGTCTAAGATCAGATC
258 TTAGGCATACAGAGTTCATTCCCAGTCTAAGAATACAGAGTTCATTCCTAGTCTAAGATCAGATC
14284433 GGATCGAGGGTTGCGGCAGTA
323 GGATCGAGGGTTGCGGCAGTA
* * * * * *
14284454 GGATCGACAGCACGTA-AGGGGGATCGAGCCGATCCTCGGCTTGCGCATTTTGCCTCTCTGGCCG
1 GGATCGACAGCACGCAGAGGGGGATCGAGCCAATCCTCGACTTACGCATTATGCCTCTCCGGCCG
* * * ** *
14284518 GTTGAGTGCACGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAGC
66 GCTGAGTGCACGCACGCCCATTTCGAGGGTTAACTTAGGCATAGGGAGTTCATCCCATGTCAAGC
* * * * * * **
14284583 CCCATCCAGACTGAGGGTTGTGGCAGCAGGACTGGCAGCACGCAGAGGGGGGCCGAGCTGATCCC
131 CCCATCCAGACTGAGGGATGTGCCAGAAGGACTGGCAGCACACAGAAGGGGACCGAGCCAATCCC
* * * ** *
14284648 CGGCTTGCGCATTATGCCTCTTCGGTCGGTTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTA
196 CGGCTTGCACATTATACCTCTCCGCCCGGTTCAACGCACGCACGCTCGTTTCATGGGTTGACTTA
*
14284713 TGCATACAGAGTTCATTCCCAGTCTAAGA
261 GGCATACAGAGTTCATTCCCAGTCTAAGA
14284742 TTGGATCGGA
Statistics
Matches: 238, Mismatches: 47, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
340 5 0.02
341 36 0.15
342 182 0.76
343 15 0.06
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (343 bp):
GGATCGACAGCACGCAGAGGGGGATCGAGCCAATCCTCGACTTACGCATTATGCCTCTCCGGCCG
GCTGAGTGCACGCACGCCCATTTCGAGGGTTAACTTAGGCATAGGGAGTTCATCCCATGTCAAGC
CCCATCCAGACTGAGGGATGTGCCAGAAGGACTGGCAGCACACAGAAGGGGACCGAGCCAATCCC
CGGCTTGCACATTATACCTCTCCGCCCGGTTCAACGCACGCACGCTCGTTTCATGGGTTGACTTA
GGCATACAGAGTTCATTCCCAGTCTAAGAATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGA
TCGAGGGTTGCGGCAGTA
Found at i:14284705 original size:158 final size:157
Alignment explanation
Indices: 14284438--14284731 Score: 349
Period size: 158 Copynumber: 1.9 Consensus size: 157
14284428 AGATCGGATC
* * * *
14284438 GAGGGTTGCGGCAGTAGGATCGACAGCACGTAAGGGGGATCGAGCCGATCCTCGGCTTGCGCATT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
* * ** ** * **
14284503 TTGCCTCTCTGGCCGGTTGAGTGCACGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTCTGGCCGGTTCAACGCACGCACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTT
14284568 CATTCCATGTCAAGCCCCATCCAGACT
131 CATTCCATGTCAAGCCCCATCCAGACT
* * * *
14284595 GAGGGTTGTGGCAGCAGGA-CTGGCAGCACGCAGAGGGGGGCCGAGCTGATCCCCGGCTTGCGCA
1 GAGGGTTGCGGCAGCAGGATC-GACAGCACGCA-AGGGGGACCGAGCCGATCCCCGGCTTGCGCA
* * * * *
14284659 TTATGCCTCT-TCGGTCGGTTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGA
64 TTATGCCTCTCT-GGCCGGTTCAACGCACGCACGCCCATTTCATGGGTTGACTTAGGCATACAGA
14284723 GTTCATTCC
128 GTTCATTCC
14284732 CAGTCTAAGA
Statistics
Matches: 112, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
156 1 0.01
157 27 0.24
158 84 0.75
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (157 bp):
GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
ATGCCTCTCTGGCCGGTTCAACGCACGCACGCCCATTTCATGGGTTGACTTAGGCATACAGAGTT
CATTCCATGTCAAGCCCCATCCAGACT
Found at i:14284910 original size:26 final size:25
Alignment explanation
Indices: 14284875--14284923 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
14284865 GGCTTAGGCG
14284875 TACGGGTTCATTCC-ATGTCTAAGCA
1 TACGGGTTCATTCCTA-GTCTAAGCA
14284900 TACGGAGTTCATTCCTAGTCTAAG
1 TACGG-GTTCATTCCTAGTCTAAG
14284924 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.23
26 16 0.73
27 1 0.05
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (25 bp):
TACGGGTTCATTCCTAGTCTAAGCA
Found at i:14286691 original size:159 final size:156
Alignment explanation
Indices: 14286335--14286829 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 156
14286325 TAAGCATATA
* * *
14286335 GAGTTCATTCCCA-GTCAAAGATCGGATAGGACCGAGGGTTGTGAC-AGCAAGATAGACAGCACG
1 GAGTTCATT-CCATGTCTAAGATCGGATAGGACTGAGGGTTGTG-CTAGCAGGATAGACAGCACG
* * * * * * *
14286398 CAGGGGGGATCGGGCCGATCTCGGCTTGTGCATTCCGCCTCTCCGACCGACTGAGCGCCCGCACG
64 CAGGGGGGACCGGTCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACG
* *
14286463 CCCGTTTCATGGGTTCGCTTAGGCATAGG
129 CTCGTTTCATGGGTT-GCTTAGGCATACG
* ** ** * * *
14286492 GAGTTCATTCCATGTCTAAG-CCCCATCCGAATCGAGGGTTGTGCTAGCGGGACT-GGCAGCACG
1 GAGTTCATTCCATGTCTAAGATCGGATAGGACT-GAGGGTTGTGCTAGCAGGA-TAGACAGCACG
** * * *
14286555 CAGAGGGGGACCGGTCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCTGCA
64 CAG-GGGGGACCGGTCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCA
14286620 CGCTCGTTTCATGGGTTGACTTAGGCATACG
127 CGCTCGTTTCATGGGTTG-CTTAGGCATACG
* * * * * *
14286651 GAGTTCATTCCCA-GTCTAAGATTGGACT-GGACTGAAGGTTGCGGTAGCAGGATCGATAGCACG
1 GAGTTCATT-CCATGTCTAAGATCGGA-TAGGACTGAGGGTTGTGCTAGCAGGATAGACAGCACG
* ** * *
14286714 CAGGGGGGGACCGAGT-CGGTGCCCGGCTTGCGCATTCTGCCAGTCC-AGTCGGCTGAGCGCCTA
64 CA-GGGGGGACCG-GTCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCTG
* * *
14286777 CACGCTCATTTCCTGGGTTGGCTTAGGCATACA
125 CACGCTCGTTTCATGGGTT-GCTTAGGCATACG
14286810 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
14286830 CATATGGAGT
Statistics
Matches: 271, Mismatches: 51, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
156 9 0.03
157 41 0.15
158 21 0.08
159 188 0.69
160 11 0.04
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GAGTTCATTCCATGTCTAAGATCGGATAGGACTGAGGGTTGTGCTAGCAGGATAGACAGCACGCA
GGGGGGACCGGTCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTGCACGCT
CGTTTCATGGGTTGCTTAGGCATACG
Found at i:14287215 original size:513 final size:512
Alignment explanation
Indices: 14286379--14287540 Score: 1422
Period size: 513 Copynumber: 2.3 Consensus size: 512
14286369 AGGGTTGTGA
* * * *
14286379 CAGCAAGATAGACAGCACGCAGGGGGGATCGGGCCGAT-CTCGGCTTGTGCATTCCGCCTCTCCG
1 CAGCAGGAT-GACAGCACGCAGGGGGGATCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCCG
* *
14286443 ACCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTC
65 -CCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * *
14286508 TAAGCCCCATCCGAATCGAGGGTTGTGCTAGCGGGACTGGCAGCACGCAGAGGGGGACCGGTCCG
129 TAAGCCCCAGCCGAACCAAGGGTTGTGCTAGCGGGACTGACAGCACGCAGAGGGGGACCGGGCCG
* ** *
14286573 ATCCCCAACTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCTGCACGCTCGTTTCATGGGTTG
194 ATCCCCAACTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGCACGCTCGTTTCATGGGTTG
* * * * * ** *
14286638 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAAGGTTGCGGTAGCAGGA
259 ACTTAGGCATACAGAGTTCATTACCACTCTAAGATCGAACCAGACTGAAGGTTGCGATAGCAGGA
* * * * * * * *
14286703 TCGATAGCACGCAGGGGGGGACC-GAGTCGGTGCCCGGCTTGCGCATTCTGCCAGTCCAGTCGGC
324 TCGACAGCACGCAGAGGGGGACCAG-GTCGATCCCCGACTTGCACATTCTGCCACTCCAGCCGGC
* *
14286767 TGAGCGCCTACACGCTCATTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
388 TGAGCGCCCACACGCTCATTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATCTCTAAGCA
** * * * *
14286832 TATGGAGTTCATTCCCAGTCTAAGTTC-AGA-CAGGACCAAGGGTTGCGGCAGCAGGACAAG
453 TACAGAGTTCATTCCCACTCTAAGATCGA-ACCA-GACCAAGGCTTGCGACAGCAGGACAAG
* ** *
14286892 CAGCAGGATCGACAGCACGCAGGGGGTATCGATCCGATCCCCGTCTTGTGAATTCTGCC-CTCCA
1 CAGCAGGAT-GACAGCACGCAGGGGGGATCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCC-
* *
14286956 GCCGGCTGAGTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
64 GCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * *
14287021 TAAGCCCTAGCTGAACCAAGGGTTGTGGC-AGCGGTA-TCGACAGCACGTAGAGGGGGATCGGGC
129 TAAGCCCCAGCCGAACCAAGGGTTGT-GCTAGCGGGACT-GACAGCACGCAGAGGGGGACCGGGC
* ** * * *
14287084 TGATCCCCGGCTTGCGCATTATGCCTTTTCTG-CCAGCTCAACGCCCGCACGCTCGTTTCGTGGG
192 CGATCCCCAACTTGCGCATTATGCC-TCTCCGACCAGCTCAACGCCCGCACGCTCGTTTCATGGG
* * *
14287148 TTGACTTATGCATACAGAGTTCATTACCACTCTAAGATCGAACCAGACTGAGGGTTTCGATAGCA
256 TTGACTTAGGCATACAGAGTTCATTACCACTCTAAGATCGAACCAGACTGAAGGTTGCGATAGCA
* * * **
14287213 GGATCGACAGCATGCAGAGGGGGACCAGGTCGATCCCCGACTTGCACTTTCTGCCTCTCTGGCCG
321 GGATCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCACATTCTGCCACTCCAGCCG
* * * * *
14287278 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCTTCTCTAAG
386 GCTGAGCGCCCACACGCTCATTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATCTCTAAG
* * * *
14287343 CATGCAGAGTTCATTCCCACTCTAAGATCGAACCAGACCGAGGCTTGTGACAGCAGGACCAG
451 CATACAGAGTTCATTCCCACTCTAAGATCGAACCAGACCAAGGCTTGCGACAGCAGGACAAG
* ** * *
14287405 CAGCAGGATTAGCAGCACATAGGGGGGGACCGGGCCAATCCCCGTCTTGTGCATTCTGCCTCTCC
1 CAGCAGGATGA-CAGCACGCA-GGGGGGATCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCC
** *
14287470 GGTAGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGT
64 -GCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
14287535 CTAAGC
128 CTAAGC
14287541 ATATGGAGTT
Statistics
Matches: 549, Mismatches: 89, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
512 2 0.00
513 419 0.76
514 59 0.11
515 69 0.13
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (512 bp):
CAGCAGGATGACAGCACGCAGGGGGGATCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCCGC
CGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCCGAACCAAGGGTTGTGCTAGCGGGACTGACAGCACGCAGAGGGGGACCGGGCCGAT
CCCCAACTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACAGAGTTCATTACCACTCTAAGATCGAACCAGACTGAAGGTTGCGATAGCAGGATC
GACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCACATTCTGCCACTCCAGCCGGCTGA
GCGCCCACACGCTCATTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATCTCTAAGCATAC
AGAGTTCATTCCCACTCTAAGATCGAACCAGACCAAGGCTTGCGACAGCAGGACAAG
Found at i:14287563 original size:26 final size:26
Alignment explanation
Indices: 14287513--14287565 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14287503 GTTGGCTTAG
*
14287513 GCATAGGCAGTTCATTCCATGTCTAA
1 GCATAGGCAGTTCATTCCATATCTAA
14287539 GCATATGG-AGTTCATTCCCA-ATCTAA
1 GCATA-GGCAGTTCATT-CCATATCTAA
14287565 G
1 G
14287566 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAGGCAGTTCATTCCATATCTAA
Found at i:14288283 original size:26 final size:26
Alignment explanation
Indices: 14288246--14288298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14288236 GCTGACTTAG
14288246 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
14288272 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14288298 G
1 G
14288299 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14288730 original size:158 final size:157
Alignment explanation
Indices: 14288272--14288772 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 157
14288262 CCCAATCTAA
* * * * *
14288272 GCATACGTAGTTCATTCCCA-GTCTAAGATCAAACCGAACCGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGGA-GATCGAC
** * * * *
14288336 AGCACGCAGGGGGGATCGGGCCGAT-CCCAGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCG
64 AGCACGCAGGGGGGATCTAGTCGATCCCCA-GCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
* *
14288400 CCCACACGCTCGTTTCGTAGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
14288430 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGATCAAGGGTTGTGGCAGCG-GTACCTG
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAG-GAG-ATC-G
* * * * * * *
14288493 -CAGCTCACAGAGGGGGA-CTGAGTCGATCCTCGGCTTGCGCATTATGCCTC-TCGGTCGGCTTA
62 ACAGCACGCAG-GGGGGATCT-AGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGA
* * *
14288555 GCGCCCGCACACACGTTTCGTGGGTTGACTTAG
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14288588 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGGCAGGAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGG-AGATCGAC
* * **
14288652 AGCACGCAGGGGGGATCTAGTCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGCCCGGCTGAGCAA
64 AGCACGCAGGGGGGATCTAGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
* * *
14288717 CTGCACGCTCGTTTTGTGGGTTGGCTTAA
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
14288746 ACATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14288773 CATACGGAGT
Statistics
Matches: 265, Mismatches: 62, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 43 0.16
158 187 0.71
159 33 0.12
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGGAGATCGACAG
CACGCAGGGGGGATCTAGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14288796 original size:26 final size:26
Alignment explanation
Indices: 14288747--14288798 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14288737 TTGGCTTAAA
* *
14288747 CATATGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
14288773 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
14288799 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:14290165 original size:26 final size:26
Alignment explanation
Indices: 14290136--14290188 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14290126 GTTGACTTAG
14290136 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14290162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14290188 G
1 G
14290189 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14291498 original size:26 final size:26
Alignment explanation
Indices: 14291462--14291514 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14291452 GTTGGCTTAG
14291462 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
14291488 GCATACCGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
14291514 G
1 G
14291515 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:14291786 original size:171 final size:171
Alignment explanation
Indices: 14291527--14291844 Score: 433
Period size: 171 Copynumber: 1.9 Consensus size: 171
14291517 CAGACCAAAT
*
14291527 CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAGAGGGGACGGGGCCGATCC
1 CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAGAGGGGACGGGGCCGAACC
* * * * * *
14291592 CCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGGGCTCGCACGCTCGTTTCGTGGGTTGGCTT
66 CAGACTTACGCATTCTACCTCTTCGGCCGGCTGAGGGCCCGCACGCTCGTTTCATGGGTTGACTT
*
14291657 AGGCATACGGAGTTCATTCCATGTTTAAGCCCCAGTCGGAC
131 AGGCATACGAAGTTCATTCCATGTTTAAGCCCCAGTCGGAC
* *** * * * *
14291698 CGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGGCAGCACG-TAGAGGGGAACTGGGTCGAAC
1 CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAGAGGGG-ACGGGGCCGAAC
* * *
14291762 CCTAG-CTTACGCATTCTACCTCTTCGGTCGGGTGAGTGCCCGCACGCTCGTTTCATGGGTTGAC
65 CC-AGACTTACGCATTCTACCTCTTCGGCCGGCTGAGGGCCCGCACGCTCGTTTCATGGGTTGAC
14291826 TTAGGCATACGAAGTTCAT
129 TTAGGCATACGAAGTTCAT
14291845 CCCTGGTCTA
Statistics
Matches: 126, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
170 7 0.06
171 118 0.94
172 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (171 bp):
CGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAGCACGCAAGAGGGGACGGGGCCGAACC
CAGACTTACGCATTCTACCTCTTCGGCCGGCTGAGGGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACGAAGTTCATTCCATGTTTAAGCCCCAGTCGGAC
Found at i:14291914 original size:368 final size:355
Alignment explanation
Indices: 14291352--14292046 Score: 835
Period size: 368 Copynumber: 1.9 Consensus size: 355
14291342 CAAGAGTTGA
* * * * *
14291352 GGTAGCAGGATCGACAGTACGTAGGGGGGGACTGGGCCGATCCCTGACTTACGCATTCTGCCTCT
1 GGTAGCAGGATCGACAGCACGTAGAGGGGAACTGGGCCGAACCCTGACTTACGCATTCTACCTCT
* *
14291417 CCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
66 CCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAT
* *
14291482 GTCTAAGCATACCGAGTTCATTCCATGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGA
131 GTCTAAGCATACAGAGTTCATTCCATGTCTAAGATCAGACCAAACCGAGGGTT-----A-CA-G-
*
14291547 CCAACAGCAGGATCGGCAGCACGCAAGAGGGGA-CGGGGCCGATCCCCGACTTGCGCATTCTGCC
188 ----CAGCAGGATCGACAGCACG-AAGAGGGGATC-GGGCCGATCCCCGACTTGCGCATTCTGCC
* ** * *
14291611 TCTTCGGCCGGCTGAGGGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
247 TCTCCAACCGGCTGAGGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
*
14291676 CATGTTTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACC
312 CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACC
* * *
14291720 GGTAGCGGGATCGGCAGCACGTAGAGGGGAACTGGGTCGAACCCT-AGCTTACGCATTCTACCTC
1 GGTAGCAGGATCGACAGCACGTAGAGGGGAACTGGGCCGAACCCTGA-CTTACGCATTCTACCTC
* ** ** *
14291784 TTCGGTCGGGTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCA-TCC
65 TCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCC
* * * ** *
14291847 CTGGTCTAAGTATACAGAGTTCATTCCCA-GTCTAGGATC-GAACCGGACCGAGGGTTACAGTAG
129 AT-GTCTAAGCATACAGAGTTCATT-CCATGTCTAAGATCAG-ACCAAACCGAGGGTTACAGCAG
* * * *
14291910 CAGGATCGACAGCACGAAGGGGGGATCGGGCCGATCTCTGACTTGCGTATTCTGCCTCTCCAACC
191 CAGGATCGACAGCACGAAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACC
* * *
14291975 GGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
256 GGCTGAGGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
14292040 GCCCCAG
321 GCCCCAG
14292047 CCAGACTAAG
Statistics
Matches: 283, Mismatches: 38, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
355 106 0.37
356 18 0.06
361 1 0.00
362 2 0.01
363 1 0.00
367 7 0.02
368 145 0.51
369 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (355 bp):
GGTAGCAGGATCGACAGCACGTAGAGGGGAACTGGGCCGAACCCTGACTTACGCATTCTACCTCT
CCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAT
GTCTAAGCATACAGAGTTCATTCCATGTCTAAGATCAGACCAAACCGAGGGTTACAGCAGCAGGA
TCGACAGCACGAAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGCTG
AGGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGTCGGACCGAGGGTTGTGGCAGCAGGACC
Found at i:14293080 original size:26 final size:26
Alignment explanation
Indices: 14293050--14293102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14293040 GTTGACTTAG
*
14293050 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14293076 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14293102 G
1 G
14293103 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14293891 original size:159 final size:160
Alignment explanation
Indices: 14293716--14294094 Score: 390
Period size: 159 Copynumber: 2.4 Consensus size: 160
14293706 GTTGGCTGAG
* * * * * *
14293716 CGCCCGTACGCCCGTTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCA-
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
* * *
14293780 ACCAGACCGAGGGTCATGGCAGCGGGACCGATAGCACGCAGAAG-GGGACTGGGCCGATCCCCAA
66 ACCAGACCAAGGGTCATGACAGCAGGACCGATAGCACGCAG-AGCGGGACTGGGCCGATCCCCAA
*
14293844 CTTGCGCATTATGCCTCTTCGGCC-AGCTCAA
130 CTTGCGCATTATGCCTCTCCGGCCGA-CTCAA
* * * * *
14293875 CGCCCGGACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCC-TAGTCTAAG-ATCA
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCA
* * * * * ** * *
14293938 GACCAGACTAAGGGTTATGACAGCAGGATCGATAGCACGTAGTGCGGGACTGGGTTGGTCCCCAG
65 GACCAGACCAAGGGTCATGACAGCAGGACCGATAGCACGCAGAGCGGGACTGGGCCGATCCCCAA
* * * *
14294003 CTTGCGCATTCTGCCTCTCCGGTCGACTGAG
130 CTTGCGCATTATGCCTCTCCGGCCGACTCAA
* * * * * *
14294034 CACCCGCATGCTCGGTTCATGGGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAAGCA
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14294095 TACGGAGTTC
Statistics
Matches: 177, Mismatches: 37, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
158 4 0.02
159 170 0.96
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
ACCAGACCAAGGGTCATGACAGCAGGACCGATAGCACGCAGAGCGGGACTGGGCCGATCCCCAAC
TTGCGCATTATGCCTCTCCGGCCGACTCAA
Found at i:14294097 original size:26 final size:26
Alignment explanation
Indices: 14294066--14294118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14294056 GTTGGCCTAG
14294066 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
14294092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14294118 G
1 G
14294119 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14294820 original size:26 final size:26
Alignment explanation
Indices: 14294790--14294842 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14294780 GTTGACTTAG
*
14294790 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14294816 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14294842 G
1 G
14294843 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14296134 original size:159 final size:159
Alignment explanation
Indices: 14295840--14296182 Score: 402
Period size: 159 Copynumber: 2.2 Consensus size: 159
14295830 CAGTCTAAGT
* * * * *
14295840 ATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGATCAAGAGTTGCGACAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCGACAGTAGGATCGACAGC
* * * * * * * **
14295905 ACGTAGGGGAGGATCGGGCTGATCCCCGACTTGTGCATTATGCTTCTTCGGCTGGCTCAGTGCCC
66 ACGCAGGGGAGGATAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAGCACCC
*
14295970 GCACGCTCATTTCATGGGTTGACTTAGGC
131 ACACGCTCATTTCATGGGTTGACTTAGGC
* **
14295999 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCGACAGTAGGATCGACAGC
* * * * * * *
14296064 ACGCAGGGGGGGACTAGGTC-GGTCCCTGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCACC
66 ACGCAGGGGAGGA-TAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAGCACC
* * *
14296128 CACACGCTCGTTTCGTGGGTTGCCTTAGGC
130 CACACGCTCATTTCATGGGTTGACTTAGGC
14296158 ATACGGAGTTCATT-CCATGTCTAAG
1 ATACGGAGTTCATTCCCA-GTCTAAG
14296183 CATACGGAGT
Statistics
Matches: 154, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
158 3 0.02
159 147 0.95
160 4 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCGACAGTAGGATCGACAGC
ACGCAGGGGAGGATAGGGCTGATCCCCGACTTGTGCATTATACCTCTCCGACCGGCTCAGCACCC
ACACGCTCATTTCATGGGTTGACTTAGGC
Found at i:14296192 original size:26 final size:26
Alignment explanation
Indices: 14296156--14296208 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14296146 GTTGCCTTAG
14296156 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14296182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14296208 G
1 G
14296209 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14296653 original size:354 final size:355
Alignment explanation
Indices: 14295925--14296732 Score: 940
Period size: 354 Copynumber: 2.3 Consensus size: 355
14295915 GGATCGGGCT
* * * * * * * *
14295925 GATCCCCGACTTGTGCATTATGCTTCTTCGGCTGGCTCAGTGCCCGCACGCTCATTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
*** *
14295990 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGG
* * * ** *
14296055 ATCGACAGCACGCAGGGGGGGACTAGGTCGGTCCCTGGCTTGTGCATTCTACCTCTCCGACCGGC
131 ATCGACAGAACGCAGGGGGGGACTAGGTCGGTCCCCGACTTACGCATTCTACCTCTCAGACCGGC
14296120 TGAGCACCCACACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
196 TGAGCACCCACACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * *
14296185 TACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGCTACGACAGCAGGACCAGCAGTA
261 TACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGCTACGACAGCAGGACCAGCAGCA
** * * *
14296250 GGATCGATGGCACGCAAGAGGGATCGAGTC
326 GGATCGACAGCACACAAGAGGGACCGAGCC
* ** * * * *
14296280 GGTCCTTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCACCCGCACGTTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
** * * * *
14296345 GGTTTTGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCAACAGCAGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGG
* * * * * * *
14296410 ATCGACAGAACGTA-GGGGGGA-TCGGGTCGGTCCCCGATTTACGCATTTTGCCTCTTTAG-TCG
131 ATCGACAGAACGCAGGGGGGGACT-AGGTCGGTCCCCGACTTACGCATTCTACCTC-TCAGACCG
* * *
14296472 GTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
194 GCTGAGCACCCACACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * * ** * *
14296537 CATACGGAGTTCATTCCCAATCTCAGATCGGATCGGATTGAGGGTTGCGGTAGCAGGTCCAGTAG
259 CATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGCTACGACAGCAGGACCAGCAG
* * *
14296602 CAGTATCGACAGCTCACAGGAGGGACC-AGGCC
324 CAGGATCGACAGCACACAAGAGGGACCGA-GCC
* * ** *
14296634 GATCCCCGACTTACGCATTCTGACTCTTCGATCGGCTAAGCGCCCGTACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
14296699 GACTTAGGCATACGAAGTTTATCCCCAGTCTAAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14296733 CATATGGAGT
Statistics
Matches: 371, Mismatches: 79, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
353 2 0.01
354 249 0.67
355 120 0.32
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (355 bp):
GATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGG
ATCGACAGAACGCAGGGGGGGACTAGGTCGGTCCCCGACTTACGCATTCTACCTCTCAGACCGGC
TGAGCACCCACACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGCTACGACAGCAGGACCAGCAGCA
GGATCGACAGCACACAAGAGGGACCGAGCC
Found at i:14298061 original size:26 final size:26
Alignment explanation
Indices: 14298031--14298083 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14298021 GTTGGCTTAG
14298031 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14298057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14298083 G
1 G
14298084 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14298581 original size:159 final size:158
Alignment explanation
Indices: 14298292--14298595 Score: 367
Period size: 159 Copynumber: 1.9 Consensus size: 158
14298282 GAAGTGGATC
* * * * * *
14298292 GAGGGTTGCGGTAGTAAGATCGATAACACGCAGGGGGGACCGGGCCGATCCCTGGCATGCCCATT
1 GAGGGTTGCGGTAGCAAGATCGACAACAAGCAGGGAGGACCAGGCCGATCCCCGGCATGCCCATT
* * * * *
14298357 CTACCTCTTCGGTTGGCTCAGCGCCCGCATGCTCATTTTATGGGTTGACTTAGGCATACGGAGTT
66 CTACCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT
14298422 CATTCC-TAGTCTAAGATCGGATCGAACT
131 CATTCCAT-GTCTAAGATCGGATCGAACT
* ** * * *
14298450 GAGGGTTGCGGTAGCAAGATCGACAACAAGCAAGGGAGGACTAGGTTGGTCCCCGGCTTGCGCAT
1 GAGGGTTGCGGTAGCAAGATCGACAACAAGC-AGGGAGGACCAGGCCGATCCCCGGCATGCCCAT
* * * * * * *
14298515 TCTGCCTCTTCGATCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGT
65 TCTACCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
14298580 TCATTCCATGTCTAAG
130 TCATTCCATGTCTAAG
14298596 CCCCAGTCGG
Statistics
Matches: 120, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 28 0.23
159 91 0.76
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GAGGGTTGCGGTAGCAAGATCGACAACAAGCAGGGAGGACCAGGCCGATCCCCGGCATGCCCATT
CTACCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT
CATTCCATGTCTAAGATCGGATCGAACT
Found at i:14298776 original size:26 final size:26
Alignment explanation
Indices: 14298740--14298792 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14298730 GTTGACATAG
14298740 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
14298766 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
14298792 G
1 G
14298793 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:14299267 original size:365 final size:350
Alignment explanation
Indices: 14298410--14299354 Score: 849
Period size: 365 Copynumber: 2.6 Consensus size: 350
14298400 GTTGACTTAG
* * * **
14298410 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGAACTGAGGGTTGCGGTAGCAAGATCGAC
1 GCATAC-GAGTTCATTCC-AGTCTAAGATCGGACT-GGACTGAGGGTTGCGATAGCAGGATCGGT
* * * * * * *
14298474 AACAAGCAAGGGAGGACTAGGTTGGTCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTG
63 AGCAAGC-AGGGGGGAC-AGGTTGATCCTCGGCTTACGCATTCTGCCTCTCCAAT-GGCTGAGTG
* * * *
14298539 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCCCCAGTC
125 CCCAC-CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * *
14298604 GGATCG-GTGGTTGTGGCAGCAGGACCGGCAGTGGGATCAACAGCATAGAGAAGGGGATCGAGCT
189 GGATCGAG-GGTTATGGCAGCAAGACCGACAGCGGGATCAACAGCATAGAGAAGGGGATCGAGCT
* * * *
14298668 GATCCCTGGCTTACGCATTATGCCTCTCCGGCCGGTTGAGCACCCTCACGCTCGTTTCGTGGGTT
253 GATCCCTGGCTTACGCATTATGCCTCGCCGGCCGGTCGAGAACCCACACGCTCGTTTCGTGGGTT
*
14298733 GACATAGGCATATGGAGTTCATCCCCAGTCTAA
318 GACATAGGCATACGGAGTTCATCCCCAGTCTAA
* * * **
14298766 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTATGGTAGCAGGACCAGTA
1 GCATA-CGAGTTCATT-CCAGTCTAAGATCGGACTGGACTGAGGG---T--T-GC--G---A-TA
* * * ** * *
14298831 GCAGGATCGGTAGCAAGTAGAGGGGATCAGGCTGATCCTCGGCTTACGCATTCTATCT-TCTGAC
52 GCAGGATCGGTAGCAAGCAGGGGGGA-CAGGTTGATCCTCGGCTTACGCATTCTGCCTCTC-CAA
* * * *
14298895 TGGCTGAGTGCCCACCGCTCGTTTCATGGGTTGACCTAGGCGTACGGAGTTCATTCCATGTCCAA
115 TGGCTGAGTGCCCACCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * *
14298960 GCCCTAGTCGGACCGAGGGTTATGGTAGCAAGACTGACAGCGGGATCGACAGCA-CGCAGAGGGG
180 GCCCCAGTCGGATCGAGGGTTATGGCAGCAAGACCGACAGCGGGATCAACAGCATAG-AGAAGGG
* * * * *
14299024 GATCGGGCTGATCCTTGGCTTGCGTATTATGCTTCTTCAGCCGGCCTCTCTTGTCGACTGAATGC
244 GATCGAGCTGATCCCTGGCTTACGCATTATGC--C-TC-GCCGG---C-C-GGTCGA--GAA--C
* *
14299089 CCACACGCTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATCCCCTA-TCTAA
296 CCACACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCC-AGTCTAA
* *
14299144 GCATACGAGTTCATTCTCGGTCTAAGATTGGACTGGACTGAGGGTTGCGATAGCAGGATCGGTAG
1 GCATACGAGTTCATTC-CAGTCTAAGATCGGACTGGACTGAGGGTTGCGATAGCAGGATCGGTAG
* * ** *
14299209 CATGCAGGGGGGACCGGTTGATCCTCGGCTTACGCATTCTGCCTCTCCAATAGGCTGAGCACTTG
65 CAAGCAGGGGGGACAGGTTGATCCTCGGCTTACGCATTCTGCCTCTCCAAT-GGCTGAGTGC--C
* * * * *
14299274 CA-CGCCCGTTTCATGGGTTGGTTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
127 CACCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
*
14299338 TCGAGGGTTGTGGCAGC
192 TCGAGGGTTATGGCAGC
14299355 GATACCTGCA
Statistics
Matches: 464, Mismatches: 87, Indels: 66
0.75 0.14 0.11
Matches are distributed among these distances:
356 34 0.07
357 2 0.00
359 1 0.00
361 1 0.00
362 2 0.00
364 31 0.07
365 155 0.33
366 82 0.18
367 34 0.07
368 18 0.04
369 5 0.01
371 2 0.00
372 2 0.00
373 1 0.00
374 5 0.01
376 3 0.01
377 30 0.06
378 55 0.12
379 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (350 bp):
GCATACGAGTTCATTCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGATAGCAGGATCGGTAGC
AAGCAGGGGGGACAGGTTGATCCTCGGCTTACGCATTCTGCCTCTCCAATGGCTGAGTGCCCACC
GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGA
GGGTTATGGCAGCAAGACCGACAGCGGGATCAACAGCATAGAGAAGGGGATCGAGCTGATCCCTG
GCTTACGCATTATGCCTCGCCGGCCGGTCGAGAACCCACACGCTCGTTTCGTGGGTTGACATAGG
CATACGGAGTTCATCCCCAGTCTAA
Found at i:14299619 original size:26 final size:26
Alignment explanation
Indices: 14299590--14299642 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14299580 GTTGGCTTAG
14299590 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14299616 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14299642 G
1 G
14299643 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14301022 original size:26 final size:26
Alignment explanation
Indices: 14300992--14301044 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14300982 GTTGACTTAG
14300992 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
14301018 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
14301044 G
1 G
14301045 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:14301553 original size:26 final size:26
Alignment explanation
Indices: 14301513--14301565 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14301503 GTTGACTTAG
* * *
14301513 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
*
14301539 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
14301565 G
1 G
14301566 ATTGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:14302013 original size:158 final size:156
Alignment explanation
Indices: 14301539--14302040 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 156
14301529 CCCTGTCTAA
* * * * *
14301539 GCATACAGAGCTCATTCCCAGTCTAAGATTGGATTGGACAGAGGGTTGTGGCAGCAGAATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACA-AGGGTTGTGGCAGCAGGATCGATA
* * * * * * * *
14301604 GCACGCAGGGGGGACCGGGCCGATCCCCAATTTG-TTCATTCTGCCTCTCTGGCCGACTGAGCGC
65 GCACACAGGGGGGACCAGG-CGATCCCCGACTTGCGT-ATTTTGCCTCTCTGACCGACTGAGTGC
* * *
14301668 CCCCACGCCCGTTTCGTGGGTTAGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **** * * * *
14301697 GCATAGGGAGTTCATTCCAAGTCTAAG-CCCCAGCTAGATCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CTAGA-CAAGGGTTGTGGCAGCAGGATCGAT
* * * * * *
14301761 AGCACAGAGAGGGGGACCGAGTCGATCCTCTG-CTTGCGCATTTTGCCTCT-TCGACCGGCTCAG
64 AGCACACAG-GGGGGACC-AGGCGATCC-CCGACTTGCGTATTTTGCCTCTCT-GACCGACTGAG
* * * * * *
14301824 TGCCAGCAGGCTTGTTTCATGGGTCGACTTAG
125 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
14301856 GCCTACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGA-CAAGGGTTGTGGCAGCAGGATCGATA
* * *
14301921 ACACACAGGGGGCACTAGGCTGATCCCCGACTTGCGTATTTTGCCTCTCTGACCGACTGAGTGCC
65 GCACACAGGGGGGACCAGGC-GATCCCCGACTTGCGTATTTTGCCTCTCTGACCGACTGAGTGCC
14301986 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
14302014 GCATACGAAATTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
14302041 CATACGGAGT
Statistics
Matches: 260, Mismatches: 72, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 9 0.03
158 136 0.52
159 112 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACAAGGGTTGTGGCAGCAGGATCGATAG
CACACAGGGGGGACCAGGCGATCCCCGACTTGCGTATTTTGCCTCTCTGACCGACTGAGTGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14302053 original size:26 final size:26
Alignment explanation
Indices: 14302014--14302066 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14302004 GTTGGCTTAG
14302014 GCATACGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
* *
14302040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
14302066 G
1 G
14302067 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:14302883 original size:26 final size:26
Alignment explanation
Indices: 14302847--14302898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14302837 TGGCTTAGGC
14302847 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
14302873 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
14302899 TCGAACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:14303255 original size:26 final size:26
Alignment explanation
Indices: 14303226--14303278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14303216 GTTGACTTAG
*
14303226 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14303252 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14303278 G
1 G
14303279 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14303599 original size:26 final size:26
Alignment explanation
Indices: 14303569--14303619 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14303559 GTTGGCTTAG
*
14303569 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14303595 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
14303620 TGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14304585 original size:26 final size:26
Alignment explanation
Indices: 14304555--14304607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14304545 GTTGACTTAG
*
14304555 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGCTCATCCCCAGTCTAA
*
14304581 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATATGGAGCTCATCCCCAGTCTAA
14304607 G
1 G
14304608 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGGAGCTCATCCCCAGTCTAA
Found at i:14305038 original size:158 final size:157
Alignment explanation
Indices: 14304581--14305082 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 157
14304571 CCCAGTCTAA
* * * *
14304581 GCATATGGAGCTCATTCCCA-GTCTAAGATCAGACCGAACTGAAGGTTGCGACAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
14304645 AGCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGT-CGACTGAGTG
65 AGCACGTAGGGGGGACCGGGCCAATCC-CGGCTTGCGCATTCTGCCTCT-CAGTCCGACTGAGCG
* *
14304709 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
* ** ** * *
14304739 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTTGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGC
* * * *
14304803 AGCATGTAGAGGTGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCAG-CCGACTCAGC
65 AGCACGTAG-GGGGGACCGGGCCAATCCC-GGCTTGCGCATTCTGCCTC-TCAGTCCGACTGAGC
* *
14304867 GCCTGCACGCTCGTTTCATGGGTTGACTTAT
127 GCCTGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * **
14304898 GCGTACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGTCTGAGGGTTGCGGCAGTAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGC
* * * *
14304962 AACACGTAGGGGGGACCGGGCCAATCCGCGGCTTGCGTATTCTGCCTCTCTGTCCGACTGAGCAC
65 AGCACGTAGGGGGGACCGGGCCAATCC-CGGCTTGCGCATTCTGCCTCTCAGTCCGACTGAGCGC
* *
14305027 CTGCACACTCGTTTCGTGGGTTGGCTTAG
129 CTGCACGCTCGTTTCATGGGTTGGCTTAG
14305056 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14305083 CATATGGAGT
Statistics
Matches: 280, Mismatches: 53, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 9 0.03
158 146 0.52
159 121 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAGGGGGGACCGGGCCAATCCCGGCTTGCGCATTCTGCCTCTCAGTCCGACTGAGCGCCT
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:14305092 original size:26 final size:26
Alignment explanation
Indices: 14305056--14305108 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14305046 GTTGGCTTAG
14305056 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14305082 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14305108 G
1 G
14305109 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14305226 original size:184 final size:184
Alignment explanation
Indices: 14304905--14305266 Score: 521
Period size: 184 Copynumber: 2.0 Consensus size: 184
14304895 TATGCGTACA
* * * * *
14304905 GAGTTCATTCCCAGTCTAAGATCGGACCGGTCTGAGGGTTGCGGCAGTAGGATCAACAACACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCAACAACACGCA
* * * * * *
14304970 GGGGGGACCGGGCCAATCCGCGGCTTGCGTATTCTGCCTCTCTGTCCGACTGAGCACCTGCACAC
66 GGGAGGACCGGGCCAATCCGCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACAC
* *
14305035 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
131 CCGTTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
* *
14305089 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTG-GGCAGCAGGATCGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TTGCGGCAGCAGGATCAACAACACGC
* *
14305153 AGGGAGGACCGGGCCAATTCC-CAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAT
65 AGGGAGGACCGGGCCAA-TCCGCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCAC
* *
14305217 GCCCGTTTCGTGGGTTGGCTCAGGCATAGGGAGTTCATTCCATGTCTAAG
129 ACCCGTTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAG
14305267 TCCTAGCCGG
Statistics
Matches: 157, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
184 151 0.96
185 6 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCAACAACACGCA
GGGAGGACCGGGCCAATCCGCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACAC
CCGTTTCGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
Found at i:14305421 original size:157 final size:156
Alignment explanation
Indices: 14305082--14305580 Score: 503
Period size: 157 Copynumber: 3.2 Consensus size: 156
14305072 CCATGTCTAA
*
14305082 GCATATGGAGTTCATTCCCA-GTCTAAGAT-CAGACCGGACCGAGGGTT-TGGGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCAG-CCGGACCGAGGGTTGT-GGCAGCAGGATCG
* ** *
14305144 ACAGCACGCAGGGAGGACCGGGCCAATTCCC-AGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
63 ACAGTACGCAGGG-GGACC-GGCTGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * * * *
14305208 CACCCGCATGCCCGTTTCGTGGGTTGGCTCAG
125 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** *
14305240 GCATAGGGAGTTCATTCCATGTCTAAG-TCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCC-AGCCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
14305304 AGTACGCAGAGGGGACCAGGCTGATCCCCGACTTGAG-ATTATGCCTCTCCGACCGGCTCAGTGC
65 AGTACGCAG-GGGGACC-GGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
** * *
14305368 CTACACGCTCATTTCATGGGTTGACTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
14305397 GCATACAGAGTTCATTCCCA-GTCTAAGAT-CGGATCGAACCGAGGGTTGCGGCAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
14305460 CAGTACGCAGGGGGACCTGATCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGC
64 CAGTACGCAGGGGGACCGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
14305525 CCGTACGCTCGA-TTCGTGGGTTGGCTTCG
128 CCGCACGCTC-ATTTCGTGGGTTGGCTTAG
14305554 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14305581 CATACAGAGT
Statistics
Matches: 279, Mismatches: 49, Indels: 27
0.79 0.14 0.08
Matches are distributed among these distances:
155 2 0.01
156 25 0.09
157 166 0.59
158 80 0.29
159 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GTACGCAGGGGGACCGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:14306412 original size:158 final size:157
Alignment explanation
Indices: 14305886--14306434 Score: 484
Period size: 159 Copynumber: 3.5 Consensus size: 157
14305876 TCGATCGGTG
* * * * * *
14305886 TCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
1 TCTCCGACCGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-T
* * * * *
14305951 CCA-GTCTAAGATCAGACCAGACTG-AGGAT-TACGGAGCAAGATCGACCGCACGTAGGGGGGAT
65 CCATGTCTAAGATCAGACCAGACCGAAGGTTGTA-GCAGCAAGATCGACAGCACGCAGGGGGGA-
**
14306013 TAGGCTGATCCCC-GACTTGCGCATTCTGCC
128 CCGGCTGATCCCCAG-CTTGCGCATTCTGCC
* * ** * *
14306043 TCTCTGACCGGCTTAGCGCCTGCACG-TCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT
1 TCTCCGACCGGCTCAGCGCCTGCACGCT-CATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * * ** * *
14306107 CTATGTCTAAGCTCCAG-CCAGACC-AAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGG
65 CCATGTCTAAGAT-CAGACCAGACCGAA-GGTTGTAGCAGCAAGATCGACAGCACGCAG-GGGGG
*
14306170 ACCGGGCTGATCCCCAGCTTGCGCATTATGCC
127 ACC-GGCTGATCCCCAGCTTGCGCATTCTGCC
* * * ** * * ** ** * *
14306202 TCTTCGGCCGACTCAATGCCCGCATGCTTGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTC
1 TCTCCGACCGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-
* * * *
14306267 CCA-GTCTAAGATCAGATCAGACCGAAGGTTGTAGCAGCAAGATCGATAGCATGCAGGGTGGACC
65 CCATGTCTAAGATCAGACCAGACCGAAGGTTGTAGCAGCAAGATCGACAGCACGCAGGGGGGACC
*
14306331 GGACTGATCCCCAGCTTGTGCATTCTGCC
130 GG-CTGATCCCCAGCTTGCGCATTCTGCC
* * * * *
14306360 TCTCCGATCGGCTGAGCGTCTGCACGCTCATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTC
1 TCTCCGACCGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
14306425 CATGTCTAAG
66 CATGTCTAAG
14306435 CATACGGAGT
Statistics
Matches: 303, Mismatches: 74, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 71 0.23
158 108 0.36
159 115 0.38
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
TCTCCGACCGGCTCAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CATGTCTAAGATCAGACCAGACCGAAGGTTGTAGCAGCAAGATCGACAGCACGCAGGGGGGACCG
GCTGATCCCCAGCTTGCGCATTCTGCC
Found at i:14306457 original size:26 final size:26
Alignment explanation
Indices: 14306408--14306459 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14306398 CTTGGCTTAG
*
14306408 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
*
14306434 GCATACGGAGTTGACTCCCA-GTCTAA
1 GCATACGGAGTTCA-TCCCATGTCTAA
14306460 CATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:14307037 original size:26 final size:26
Alignment explanation
Indices: 14306987--14307039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14306977 GTTGACTTAG
*
14306987 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
14307013 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14307039 G
1 G
14307040 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14307732 original size:26 final size:26
Alignment explanation
Indices: 14307683--14307735 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14307673 GTTGGCTTAG
*
14307683 GCATACGGAGCTCATTCCATGTCTAA
1 GCATACGGAGCTCATCCCATGTCTAA
*
14307709 GCATACGGAGTTCATACCCA-GTCTAA
1 GCATACGGAGCTCAT-CCCATGTCTAA
14307735 G
1 G
14307736 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCATGTCTAA
Found at i:14308243 original size:159 final size:158
Alignment explanation
Indices: 14307935--14308430 Score: 389
Period size: 159 Copynumber: 3.1 Consensus size: 158
14307925 CTCAATCTAA
* * * * * * * *
14307935 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGCCTAAGACCAGACCGAACCGAAGGTTGCGGTAG-AGGACCGAC
** * * * * * * ** * *
14307999 AGCATACAAG-GGGGATCGGGCCGATC-CCCAGCTTGCGTATTCTGCCTCTCTAATCGGTTGAGC
64 AGCACGCAGGTGGGGACCGGGCTGATCACCGA-CTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* * *
14308062 ACTCACACGCCCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14308093 GCATA-GGCAGTTCATTCCATGTCTAAGACCCA-ACCGAACCGAGGGTTGTGGCT-GAGGGACCG
1 GCATACGG-AGTTCATTCCATGCCTAAGA-CCAGACCGAACCGAAGGTTGCGG-TAGA-GGACCG
** * *
14308155 GTAGCACGCAGAG-GGGGACCGGG-TCGATCCCCGACTTGCGCATTATTCCTCTCCGATCGGCTC
62 ACAGCACGCAG-GTGGGGACCGGGCT-GATCACCGACTTGCGCATTATGCCTCTCCGATCGGCTC
* * * *
14308218 AGCACCCGCATGCTCTTTTCATGGGTTGACTTAG
125 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
14308252 GCTTACGGAGTTCATTCCCA-GCCTAAGATCAGACCGGACTGAAGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGCCTAAGACCAGACCGAACCGAAGGTTGCGGTAG-AGGACCGAC
* * * * * * * *
14308316 AGCATGCAGGTGGGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGCG
64 AGCACGCAGGTGGGGACCGGGCTGATCACCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCA
14308381 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
14308411 GTATATGGAGTTCATTCCAT
1 GCATACGGAGTTCATTCCAT
14308431 ATCTTAGCAT
Statistics
Matches: 266, Mismatches: 56, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.02
158 56 0.21
159 194 0.73
160 10 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGCCTAAGACCAGACCGAACCGAAGGTTGCGGTAGAGGACCGACAG
CACGCAGGTGGGGACCGGGCTGATCACCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14308826 original size:514 final size:501
Alignment explanation
Indices: 14307871--14308844 Score: 1198
Period size: 514 Copynumber: 1.9 Consensus size: 501
14307861 GGGGGGGCTA
* *
14307871 GCTGAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGGATACAGAGTTCATCCTCAATCTAAG
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGATACAGAGTTCATCCTCAATCTAAG
* * * * * *
14307936 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAAGGTTGTGGCAGCAGGACCAACAG
* * * *
14308001 CATACAAGGGGGATCGGGCCGATCCCCAGCTTGCGTATTCTGCCTCTCTAATCGGTTGAGCACTC
131 CATACAAGGGGGATCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCAATCGGCTGAGCACCC
*
14308066 ACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGACCCAACCGAA
196 ACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGACCCAACAGAA
* * * * * *
14308131 CCGAGGGTTGTGGCTGAGGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGC
261 CCAAGGGTTGTGGCAGAGGGACCGGCAGCACGCAGAAGGGGACCGGGTCGATCCCCGACCTACGC
* * ** * **
14308196 ATTATTCCTCTCCGATCGGCTCAGCACCCGCATGCTCTTTTCATGGGTTGACTTAGGCTTACGGA
326 ATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCACACGGA
* * * *
14308261 GTTCATTCCCAGCCTAAGATCAGACCGGACTGAAGGTTGCGGTAGCAGGATCGACAGCATGCAGG
391 GTTCATTCCCAACCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGATCGACAGCATGCAGG
14308326 TGGGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTG
456 -GGGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTG
* * * ** * *
14308373 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATATGGAGTTCATTC-CATATCTTA
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGATACAGAGTTCATCCTCA-ATCTAA
* *
14308437 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAGGGTTGTGTCAGCAGGACCAACA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAAGGTTGTGGCAGCAGGACCAACA
* * * * *
14308502 GCAGGATCAACCGCACGTAGGGGGGATCGGGCTGATCCTCGGCTTGTGTATTCTACCTCTCCAGT
130 GC---AT--A---CA---A-GGGGGATCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCAAT
** * *
14308567 CGGCTGAGCACCCGTACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
183 CGGCTGAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTA
* * * *
14308632 AG-CCCTAGTCAG-ACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGTTG
248 AGACCC-A-ACAGAACCAAGGGTTGTGGCAGAGGGACCGGCAGCACGCAGAAGGGGACCGGGTCG
* * * * * ** *
14308695 ATCCCCGGCCTACGTATTATGCCTCTTCGGCCGGCTTAGTGCCCGCACACTCGTTTCGTGGGTTG
311 ATCCCCGACCTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTG
* ** *
14308760 ACTTAGGCACACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAAGGTTACGGCAGCAGGA
376 ACTTAGGCACACGGAGTTCATTCCCAACCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGA
*
14308825 TCGATAGCATGCAGGGGGGA
441 TCGACAGCATGCAGGGGGGA
14308845 TCGACTGGCT
Statistics
Matches: 392, Mismatches: 65, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
501 2 0.01
502 111 0.28
505 2 0.01
507 1 0.00
510 2 0.01
513 9 0.02
514 263 0.67
515 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (501 bp):
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGGATACAGAGTTCATCCTCAATCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAAGGTTGTGGCAGCAGGACCAACAG
CATACAAGGGGGATCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCAATCGGCTGAGCACCC
ACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGACCCAACAGAA
CCAAGGGTTGTGGCAGAGGGACCGGCAGCACGCAGAAGGGGACCGGGTCGATCCCCGACCTACGC
ATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCACACGGA
GTTCATTCCCAACCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGATCGACAGCATGCAGG
GGGGACCGGGCTGATCACCGGCTTGTGCATTCTGCCTCTCCGGTTG
Found at i:14308926 original size:26 final size:26
Alignment explanation
Indices: 14308890--14308942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14308880 GTTGACTTAG
*
14308890 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14308916 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14308942 G
1 G
14308943 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14309305 original size:478 final size:473
Alignment explanation
Indices: 14308371--14309320 Score: 1057
Period size: 478 Copynumber: 2.0 Consensus size: 473
14308361 CCTCTCCGGT
* * * * * *
14308371 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATATGGAGTTCATTCCATATCTT
1 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTA
14308436 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAGGGTTGTGTCAGCAGGACCAAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAGGG-TGTGTCAGCAGG----A-
* * * * *
14308501 AGCAGGATCAACCGCACGTAGGGGGGATCGGGCTGATCCTCGGCTTGTGTATTCTACCTCTCCAG
125 AGCAAGATCAACAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCAG
* * * * **
14308566 TCGGCTGAGCACCCGTACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
190 CCAGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* ** * * * *
14308631 AAGCCCTAGTCAGACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGTTGA
255 AAGCCCCAACCAGACCAAGGGTTGTGGCAGCGGCACTGGCAGCACACAGAAGGGGACCAGGTTAA
* * * *
14308696 TCCCCGGCCTACGTATTATGCCTCTTCGGCCGGCTTAGTGCCCGCACACTCGTTTCGTGGGTTGA
320 TCCCCGGCCTACGTATTATGCCTCTTCGACCGGCTTAGAGCCCGCACACTCATTTCATGGGTTGA
* *
14308761 CTTAGGCACACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAAGGTTACGGCAGCAGGAT
385 CTTAGGCACACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAAGGTTACAGCAGCAGGAT
* *
14308826 CGATAGCATGCAGGGGGGATCGAC
450 CGACAGCACGCAGGGGGGATCGAC
* *
14308850 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTGATCCCCA-GTCT
1 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATATCT
* *
14308914 AAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACC-AGATCGA-GG-GT-T-A-CA-G-AGCA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-AACGAGGGTGTGTCAGCAGGAAGCA
* *
14308971 AGATCGACAGCACGTAGGGGGGA-CTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACC
129 AGATCAACAGCACGTAGGGGGGATC-GGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCAG-CC
*
14309034 AGCTAAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
192 AGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
***
14309099 GCCCCAACC-GAATTGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGGCAGCACACAGAAGGG
257 GCCCCAACCAG-ACCAAGGGTTGT-G--GCA-G--CGGCA-C----T-GGCAGCACACAGAAGGG
* * * * * *
14309163 GATCAGGTTAATCCCCGGCTTGCGTATTATGCCTCTTCGATCGG-TT-GAGCACTCGTACGCTCA
309 GACCAGGTTAATCCCCGGCCTACGTATTATGCCTCTTCGACCGGCTTAGAGC-C-CGCACACTCA
* * * * *
14309226 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGCG-TCGGATCGAGGGT
372 TTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAAGATCG-GATCGGACCGAAGGT
* * *
14309290 TCCAGTAGTAGGATCGACAGCACGCAGGGGG
436 TACAGCAGCAGGATCGACAGCACGCAGGGGG
14309321 CACCGGGCCT
Statistics
Matches: 395, Mismatches: 56, Indels: 41
0.80 0.11 0.08
Matches are distributed among these distances:
465 3 0.01
466 129 0.33
467 1 0.00
469 3 0.01
470 1 0.00
472 5 0.01
473 3 0.01
474 1 0.00
475 1 0.00
476 5 0.01
477 4 0.01
478 143 0.36
479 93 0.24
480 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (473 bp):
TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAACGAGGGTGTGTCAGCAGGAAGCAAG
ATCAACAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCAGCT
AAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
CAACCAGACCAAGGGTTGTGGCAGCGGCACTGGCAGCACACAGAAGGGGACCAGGTTAATCCCCG
GCCTACGTATTATGCCTCTTCGACCGGCTTAGAGCCCGCACACTCATTTCATGGGTTGACTTAGG
CACACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAAGGTTACAGCAGCAGGATCGACAG
CACGCAGGGGGGATCGAC
Found at i:14309622 original size:317 final size:320
Alignment explanation
Indices: 14308916--14309745 Score: 915
Period size: 317 Copynumber: 2.6 Consensus size: 320
14308906 CCCAGTCTAA
* * *
14308916 GCATACGGAGTTCATTCCCAGTGTAAGATCGAAC-CAGATCGAGGGTTACAG-AGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGATCGGA-ATCGAGGGTTACAGTAGCAGGATCGAC
* * * *
14308979 AGCACGTAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGCGC
65 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
14309044 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCG
** * * **
14309109 AATTGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGGCAGCACACAGAAGGGGATCAGGTTAA
195 AACCGAGGGTTGT-GT-----GA-C--CAGCGGGACCAGCAGCACACAGAAGGGGATCAGGCCAA
* * * * * *
14309174 TCCCCGGCTTGCGTATTATGCCTCTTCGATCGGTTGAGCACTCGTACGCTCATTTCATGGGTTGA
251 TCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTCATGGATTGA
14309239 CTTAG
316 CTTAG
* * * * *
14309244 GCATACGGAGTTCATTCCTAGTCTAAGATCGCGTCGG-ATCGAGGGTTCCAGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTGTAAGATCG-ATCGGAATCGAGGGTTACAGTAGCAGGATCGAC
* * * * *
14309308 AGCACGCAGGGGGCACCGGGCCT-ATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGTG
65 AGCACGCAGGGGGGACCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * * * *
14309372 CCCGTACACCCGTTTCGTGGGTTGGGTTCGGTATAGGGAGTTCATTCAATGTCTAAGACCCAGCC
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACC
* * * * * * *
14309437 GAACCGAGGGTTGT-T-A-CAGCGGGACCAGTAGCACGCTGAGGGGGATC-GAGCCGATCGCTGG
194 GAACCGAGGGTTGTGTGACCAGCGGGACCAGCAGCACACAGAAGGGGATCAG-GCCAATCCCCGG
* * * *
14309498 CTTGCGCATTATGCCTC-TCTGGTCTGCTCAGCGCCCGCACGCTCGTTTCATGGATTGACTTAG
258 CTTGCGCATTATGCCTCTTC-GATCGGCTCAGCACCCGCACGCTCATTTCATGGATTGACTTAG
* * *
14309561 GCATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGAAT-GATGGTTGCAGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTGTAAGATC-GATCGGAATCGAGGGTTACAGTAGCAGGATCGAC
* * * * *
14309625 AGCACGCAGGGGGGATCGGGTTGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGGTGAGCGC
65 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
14309690 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGGTCATTCCATGTCTAAG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
14309746 CATACGGAGT
Statistics
Matches: 419, Mismatches: 74, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
316 4 0.01
317 235 0.56
318 3 0.01
321 1 0.00
327 1 0.00
328 42 0.10
329 131 0.31
330 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (320 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGATCGGAATCGAGGGTTACAGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCGA
ACCGAGGGTTGTGTGACCAGCGGGACCAGCAGCACACAGAAGGGGATCAGGCCAATCCCCGGCTT
GCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTCATGGATTGACTTAG
Found at i:14309693 original size:158 final size:157
Alignment explanation
Indices: 14309173--14309745 Score: 510
Period size: 158 Copynumber: 3.6 Consensus size: 157
14309163 GATCAGGTTA
* * * * * * *
14309173 ATCCCCGGCTTGCGTATTATGCCTCTTCGATCGGTTGAGCACTCGTACGCTCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * *
14309238 ACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGCGTCGG-ATCGAGGGTTCCAGTAGTAGG
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATC-AGTCGGAAT-GAGGGTTGCAGTAGCAGG
* * *
14309302 ATCGACAGCACGCAGGGGGCACCGGGCCT-
129 ATCGATAGCACGCAGGGGGGATCGGG-CTG
* * * * * * * *
14309331 ATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGTACACCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
** * * * * * * * * *
14309396 GGTTCGGTATAGGGAGTTCATT-CAATGTCTAAGACCCAG-CCGAACCGAGGGTTGTTA-CAGCG
66 ACTTAGGCATACGGAGTTCATTCCAA-GTCTAAGA-TCAGTCGGAA-TGAGGGTTG-CAGTAGCA
* * * *
14309458 GGA-CCAGTAGCACGCTGAGGGGGATCGAGCCG
127 GGATCGA-TAGCACGCAG-GGGGGATCGGGCTG
* * * ** * * * *
14309490 ATCGCTGGCTTGCGCATTATGCCTCTCTGGTCTGCTCAGCGCCCGCACGCTCGTTTCATGGATTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
14309555 ACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGATCGGAATGATGGTTGCAGTAGCAGGA
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAG-TCGGAATGAGGGTTGCAGTAGCAGGA
*
14309620 TCGATAGCACGCAGGGGGGATCGGGTTG
130 TCGATAGCACGCAGGGGGGATCGGGCTG
* * *
14309648 ATCCCCGGCTTGCACATTATGCCTCTCCGACCGGGTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
14309713 GCTTAGGCATACGGAGGTCATTCCATGTCTAAG
66 ACTTAGGCATACGGAGTTCATTCCAAGTCTAAG
14309746 CATACGGAGT
Statistics
Matches: 317, Mismatches: 85, Indels: 26
0.74 0.20 0.06
Matches are distributed among these distances:
157 6 0.02
158 197 0.62
159 106 0.33
160 8 0.03
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGTCGGAATGAGGGTTGCAGTAGCAGGAT
CGATAGCACGCAGGGGGGATCGGGCTG
Found at i:14309759 original size:26 final size:26
Alignment explanation
Indices: 14309719--14309771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14309709 GTTGGCTTAG
14309719 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
*
14309745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
14309771 G
1 G
14309772 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:14309971 original size:26 final size:26
Alignment explanation
Indices: 14309935--14309987 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14309925 TGTACATTAG
* *
14309935 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTAATCCCCAGTCTAA
*
14309961 GCATAAGGAGTTAATTCCCAGTCTAA
1 GCATAAGGAGTTAATCCCCAGTCTAA
14309987 G
1 G
14309988 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTAATCCCCAGTCTAA
Found at i:14310312 original size:26 final size:26
Alignment explanation
Indices: 14310276--14310328 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14310266 GTTGACTTAG
14310276 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14310302 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14310328 G
1 G
14310329 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14311666 original size:26 final size:26
Alignment explanation
Indices: 14311614--14311666 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14311604 GTTGGCTTAG
*
14311614 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
14311640 GCATAC-GAAGTTCATTCC-TAGTATAA
1 GCATACAG-AGTTCATTCCAT-GTATAA
14311666 G
1 G
14311667 ATTGGACAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:14312036 original size:26 final size:26
Alignment explanation
Indices: 14311984--14312036 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
14311974 GTTGTCTTAG
* * *
14311984 GCATACGGAGTTCATCCCCGATCTAA
1 GCATACAGAGTGCATCCCCAATCTAA
* *
14312010 GCATACAGAGTGCATTCCCAATTTAA
1 GCATACAGAGTGCATCCCCAATCTAA
14312036 G
1 G
14312037 ATCGAACCGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAATCTAA
Found at i:14312208 original size:871 final size:878
Alignment explanation
Indices: 14310390--14312402 Score: 2181
Period size: 871 Copynumber: 2.3 Consensus size: 878
14310380 TCGACACCCG
* * * *
14310390 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAATCCCCAGTCGGAC
1 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
* * * *
14310455 C-AAGGGTTGGGGCAGCGGGACCGGTAGCACGCAGAGGGGGA-CTGGACTGATCCCCGACTT-TC
66 CGAA-GGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCAGGAC-GATCCCCGGCTTGT-
** * * *
14310517 GCATTATGCCTCTTCGATCGGCTCAGCGCCCGTACGCTTGTTTCGTGGCTTGACTTAGGCATACG
128 GCATTATAACTCTCCGACCGGCTCAGCGCCCGGACGCTTGTTTCGTGGCTTGACTTAGGCATACG
* * **
14310582 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAGGATCAACAGCACGCA
193 AAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCAACAGCACGCA
** * * * ** *
14310647 GGGGGAGACTGGGCCAATCCTTGGCTTGTGCATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACG
258 GGGGGAGACAAGGCCAATCCTAGACTCGCACATTCTACCTCTCCAGCCGGCTGAGCACCCGCACG
* * ** *
14310712 TTCGTTTCGTGGGTTGGCTTCGGCATATGGTGTTCATTACATGTCTAAGCATACGAAGTTCATTC
323 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTACATGTCTAAGCATACGAAGTTCATTC
* * ** *
14310777 CCAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCAGGACCAGCACAGGATCGATAGCATAC
388 CCAGTATAAGATCGGACGGGACCAAGGGTCACGACAGCAGGACCAGCACAGGATCGATAGCACAC
* * * *
14310842 AGGGGGGGATCGAGTGGATCCCTGACTTGCGTATTTTGGCTCTCCGACCGACTGAGTGCCTGCAC
453 AGGGGGGGATCGAGTGGATCCCTGACTTACGCATTCTGGCTCTCCGACCGACTGAGTGCCCGCAC
* * * *
14310907 GCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGA
518 ACTCATTTCGTGGGTTAGCTTAGGCATACGAAGTTCACTCCATGTCTAAGCCCCAGCCGAACC--
* * * ** * * *
14310972 GGGTTGTGGCAGCAGAACCGGCAGCAGGATCGGTAGCATGCAGAAAGGGATCAGGCTGATCCTCG
581 GGGTTGAGGCAG-AGAACCGACAGCAGGATCGATAGCACACAGAAAGGGACCAGGCTGATCCCCA
* * * * * *
14311037 GCTTACGTATTATGCCTCTCTGACCGGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGT
645 GCCTACGCATTATGCCTCTCTGACCGGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCAT
* * * *
14311102 GGGTTGACTTAGGCATTCGAAGTTCATCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGA
710 GGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATAAGAAGTGCATTCCCAATCTAAGA
* * * *
14311167 TCAAACCAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCC
775 TCAAACCAAACTGAGGGTGGCGGCAGTAGGATCAGCAGCACGCAGGGGGGATCGGGCCAATCCCC
* * * * * *
14311232 ATCTTACATATTCTGCCTCTTAGATCGGATGAGCGCCCA
840 AGCTTACATATTCTGCCTCTCAGAGCCGATGACCGCCAA
** * *
14311271 CACGCCCATTTTATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
1 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
* * *** * *
14311336 CGAAGGTTGTGGTAGCGAGACCAACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGTGCA
66 CGAAGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCAGGACGATCCCCGGCTTGTGCA
* * *
14311401 TTATAACTCTCCGACCGGCTTAGCTCTCGGACGCTTGTTTCGTAGG-TTGACTTAGGCATACGAA
131 TTATAACTCTCCGACCGGCTCAGCGCCCGGACGCTTGTTTCGT-GGCTTGACTTAGGCATACGAA
* ** * * * * *
14311465 GTTCATTCCAAGTCTAAGATCGGACTGGACTGAGGGTTACGGTAGCAGGATCGACAGCACGTAGG
195 GTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCAACAGCACGCAGG
* * * *
14311530 GGG-GACAAGGTCAATTCTAGACTCGCACATTCTGCCTCTTC-GACCGGCTGAGCACCCGCACGC
260 GGGAGACAAGGCCAATCCTAGACTCGCACATTCTACCTCTCCAG-CCGGCTGAGCACCCGCACGC
* * *
14311593 TCTTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCC
324 TCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCC
* * * * ** * * *
14311658 TAGTATAAGATTGGACAGGGTCGAA-GGTCACGGTAGCGGGACCAGCAGTAGGATCGATAGCACG
389 CAGTATAAGATCGGAC-GGGACCAAGGGTCACGACAGCAGGACCAGCA-CAGGATCGATAGCACA
* * * * * *
14311722 CA-GGGGGG-TCCGAGTTGATCTCTGGCTTACGCATTCT-GCTTCTCTGGCTGACTGAGTGCCCG
452 CAGGGGGGGAT-CGAGTGGATCCCTGACTTACGCATTCTGGC-TCTCCGACCGACTGAGTGCCCG
* * * * * *
14311784 CACACTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCACTGCATGTCTAAGCCCCAGTCGGAT
515 CACACTCATTTCGTGGGTTAGCTTAGGCATACGAAGTTCACTCCATGTCTAAGCCCCAGCCGAAC
* * *
14311849 C-GG-T-AGG-AG-G-ACTGACAGCGGGATCGATAGTACACA-AAAGGGACC-GAGCTGA-CCCC
580 CGGGTTGAGGCAGAGAACCGACAGCAGGATCGATAGCACACAGAAAGGGACCAG-GCTGATCCCC
* * * *
14311905 AAGCCTGCGCATTATGCCTCT-TCGACCGGCCTCTCTG-GCTGGTTCAACGCCCGCACGCTCATT
644 -AGCCTACGCATTATGCCTCTCT-GACCGGCCTCTCCGATC-GGCTCAACGCCCGCACGCTCATT
* * *
14311968 TCATGGGTTGTCTTAGGCATACGGAGTTCATCCCCGATCTAAGCATACAG-AGTGCATTCCCAAT
706 TCATGGGTTGACTTAGGCATACGAAGTTCATCCCAG-TCTAAGCATA-AGAAGTGCATTCCCAAT
* *
14312032 TTAAGATCGAACCGAAAC-GAGGGTGGCGGCAGTAGGATCAGCAGCACGCAGGGGGGATCGGGCC
769 CTAAGATCAAACC-AAACTGAGGGTGGCGGCAGTAGGATCAGCAGCACGCAGGGGGGATCGGGCC
* * * * *
14312096 AATCCTCGGCTTACGTATTCTGGCTCTCCG-GCCGACTGACCGCCAA
833 AATCCCCAGCTTACATATTCTGCCTCTCAGAGCCGA-TGACCGCCAA
*
14312142 CACTCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
1 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
* * *
14312207 CGAGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCA
66 CGAAGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCAGGACGATCCCCGGCTTGTGCA
** * * * * * * * ** * * *
14312272 TTATGCCTCTTCAACCAGTTCAGTGCCCGCATGCTCATTTCGTGGGTTGACTTATGCATTC-AGA
131 TTATAACTCTCCGACCGGCTCAGCGCCCGGACGCTTGTTTCGTGGCTTGACTTAGGCATACGA-A
* * * * * *
14312336 GTTTATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTAAGGCAGCAAGATCGA-AGCACGCAG
195 GTTCATTCCAAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAACAGGATCAACAGCACGCAG
14312399 GGGG
259 GGGG
14312403 TGATCGGGCC
Statistics
Matches: 936, Mismatches: 176, Indels: 51
0.80 0.15 0.04
Matches are distributed among these distances:
869 6 0.01
870 111 0.12
871 329 0.35
872 5 0.01
874 2 0.00
875 2 0.00
876 1 0.00
877 2 0.00
879 4 0.00
880 234 0.25
881 231 0.25
882 9 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (878 bp):
CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
CGAAGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCAGGACGATCCCCGGCTTGTGCA
TTATAACTCTCCGACCGGCTCAGCGCCCGGACGCTTGTTTCGTGGCTTGACTTAGGCATACGAAG
TTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGATCAACAGCACGCAGGG
GGAGACAAGGCCAATCCTAGACTCGCACATTCTACCTCTCCAGCCGGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCA
GTATAAGATCGGACGGGACCAAGGGTCACGACAGCAGGACCAGCACAGGATCGATAGCACACAGG
GGGGGATCGAGTGGATCCCTGACTTACGCATTCTGGCTCTCCGACCGACTGAGTGCCCGCACACT
CATTTCGTGGGTTAGCTTAGGCATACGAAGTTCACTCCATGTCTAAGCCCCAGCCGAACCGGGTT
GAGGCAGAGAACCGACAGCAGGATCGATAGCACACAGAAAGGGACCAGGCTGATCCCCAGCCTAC
GCATTATGCCTCTCTGACCGGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATAAGAAGTGCATTCCCAATCTAAGATCAAAC
CAAACTGAGGGTGGCGGCAGTAGGATCAGCAGCACGCAGGGGGGATCGGGCCAATCCCCAGCTTA
CATATTCTGCCTCTCAGAGCCGATGACCGCCAA
Found at i:14312487 original size:26 final size:26
Alignment explanation
Indices: 14312456--14312506 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14312446 TGCCTTAGGC
14312456 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
14312482 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
14312507 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:14314264 original size:24 final size:24
Alignment explanation
Indices: 14314237--14314291 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
14314227 TCATGATCTT
14314237 CTGACCACAAGCA-CTCACGGTCCA
1 CTGACCA-AAGCAGCTCACGGTCCA
* *
14314261 CTGACCAACGCAGCTCATGGTCCA
1 CTGACCAAAGCAGCTCACGGTCCA
14314285 CTGACCA
1 CTGACCA
14314292 TCTCGCTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.27, C:0.40, G:0.18, T:0.15
Consensus pattern (24 bp):
CTGACCAAAGCAGCTCACGGTCCA
Found at i:14315517 original size:55 final size:55
Alignment explanation
Indices: 14315433--14315541 Score: 155
Period size: 55 Copynumber: 2.0 Consensus size: 55
14315423 GCTGCAGCAC
* * * * *
14315433 ACCAGTCGCCCGTACGCAAGGTTGACACCAACCTTTATGCTAGTCTCGCAAGGGG
1 ACCAGCCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGG
* *
14315488 ACCAGCCGCCCGCATGCATGGTTGACACCAACCATCATGCTAGTCCCGCAAGGG
1 ACCAGCCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGG
14315542 ACTTGGGAGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.24, C:0.34, G:0.25, T:0.17
Consensus pattern (55 bp):
ACCAGCCGCCCGCACGCAAGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGG
Found at i:14318856 original size:55 final size:55
Alignment explanation
Indices: 14318789--14318897 Score: 164
Period size: 55 Copynumber: 2.0 Consensus size: 55
14318779 ACTGTAGCAC
* * * * *
14318789 ACCAGTCGCCCGCATGCAAGGTTGACACCAACCTTTATGCTAGTCTCGCAAGGGG
1 ACCAGCCGCCCGCATGCAAGGTCGACACCAACCATCATGCTAGTCCCGCAAGGGG
*
14318844 ACCAGCCGCCCGCATGCATGGTCGACACCAACCATCATGCTAGTCCCGCAAGGG
1 ACCAGCCGCCCGCATGCAAGGTCGACACCAACCATCATGCTAGTCCCGCAAGGG
14318898 ACTTGGGTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.24, C:0.35, G:0.25, T:0.17
Consensus pattern (55 bp):
ACCAGCCGCCCGCATGCAAGGTCGACACCAACCATCATGCTAGTCCCGCAAGGGG
Found at i:14320211 original size:159 final size:158
Alignment explanation
Indices: 14319803--14320214 Score: 371
Period size: 159 Copynumber: 2.6 Consensus size: 158
14319793 CATCACACCA
* * *
14319803 GGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCGGCACACCCGTTTCGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * **
14319868 GCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCTGGACCAAGGGTTATGGCAGCGGGACCGGTA
65 GCATACGAAGTTCATTCCATGTCTAAGCACCAGCCGAACCAAGGGTTATGGCAGCAGGACCGACA
* * *
14319933 GCTCACAGAGGGGGACCTGGCCAATCCCT
130 GCACACAGAGGGGGACCGGGCCAATCCCC
* * ** * ** * * * *
14319962 GGCTTGCGCATTATGCCTCTTCGGTTGGCTCAATGCCCGCATGCTCGTTTCGTGGGTTGACCTAT
1 GGCTTGCGCATTCTGCCTCTCCGG-CCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
14320027 GCATAC-AGAGTTCATTCCCA-ATCTAAG-ATCAGACCGAACCGAGGGTTCTGGCAGCAGGATCG
65 GCATACGA-AGTTCATT-CCATGTCTAAGCACCAG-CCGAACCAAGGGTTATGGCAGCAGGACCG
** * * **
14320089 ACAGCACGTAGGGGGGGATCGGGCTGATCCCC
127 ACAGCACACAGAGGGGGACCGGGCCAATCCCC
* * * * *
14320121 GGCTTGCGCATTCTGCCTCTCCGACCAGTTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
14320186 GCATACGAAGTTCATTCCATGTCTAAGCA
65 GCATACGAAGTTCATTCCATGTCTAAGCA
14320215 TACGGAGTTC
Statistics
Matches: 191, Mismatches: 54, Indels: 15
0.73 0.21 0.06
Matches are distributed among these distances:
158 6 0.03
159 180 0.94
160 5 0.03
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGAAGTTCATTCCATGTCTAAGCACCAGCCGAACCAAGGGTTATGGCAGCAGGACCGACAG
CACACAGAGGGGGACCGGGCCAATCCCC
Found at i:14320236 original size:26 final size:26
Alignment explanation
Indices: 14320186--14320238 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14320176 GTTGGCTTAG
*
14320186 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
14320212 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
14320238 G
1 G
14320239 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:14320928 original size:26 final size:26
Alignment explanation
Indices: 14320898--14320950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14320888 GTTGACTTAG
*
14320898 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATAGAGTTCATCCCTAGTCTAA
*
14320924 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATATAGAGTTCATCCCTAGTCTAA
14320950 G
1 G
14320951 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCTAGTCTAA
Found at i:14321982 original size:26 final size:26
Alignment explanation
Indices: 14321952--14322056 Score: 138
Period size: 26 Copynumber: 4.0 Consensus size: 26
14321942 GTTGACTTAG
*
14321952 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14321978 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14322004 GCGTACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14322030 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14322056 G
1 G
14322057 ATCGGATCGG
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14322021 original size:52 final size:52
Alignment explanation
Indices: 14321955--14322056 Score: 159
Period size: 52 Copynumber: 2.0 Consensus size: 52
14321945 GACTTAGGCA
* * *
14321955 TACGGAGTTCATCCCCTGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGCG
* *
14322007 TACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAG
14322057 ATCGGATCGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (52 bp):
TACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGCG
Found at i:14322514 original size:26 final size:26
Alignment explanation
Indices: 14322485--14322537 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14322475 GTTGGCTTAG
* *
14322485 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14322511 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14322537 G
1 G
14322538 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14323234 original size:26 final size:26
Alignment explanation
Indices: 14323204--14323256 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14323194 GTTGACTTAG
* *
14323204 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* *
14323230 GCATACGAAGGTCATTCCTAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
14323256 G
1 G
14323257 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:14324559 original size:26 final size:26
Alignment explanation
Indices: 14324522--14324574 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14324512 GTTGACTTAG
14324522 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
14324548 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14324574 G
1 G
14324575 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14324849 original size:159 final size:158
Alignment explanation
Indices: 14324584--14325087 Score: 471
Period size: 158 Copynumber: 3.2 Consensus size: 158
14324574 GATTGGATCA
* * ** ** * * **
14324584 GACCGAGGGTTACGGCAGCAAGATCGGTAGCACATAG-GGGGACTGGGCCGATCCCTGGCTTACG
1 GACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGACAGGGCCGATCCCCGGCTTGTG
* * * * * * *
14324648 CATTCTGCCTCTCC-GACTGACTGAGGGCCCACACGCCCATTTCGTCGGTTGGCTGAGGCATAGG
66 CATTATGCCTCTCCGGAC-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
14324712 GAGTTCATTCCATGTCTAAGCCCCAACCG
130 GAGTTCATTCCATGTCTAAGCCCCAACCG
* ** ** *
14324741 GATCGAGGGTTGTGGCAGCGGGAGT-GACAGCACGCAGTAGGGGACCGGGCCGATCCCCGGCTTG
1 GACCGAGGGTTGCAGCAGCAAGA-TCGACAGCACGCAG-AGGGGACAGGGCCGATCCCCGGCTTG
* * * * **
14324805 TGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCATGCTCATTTCGTGGGTTAACTTAGGCATAC
64 TGCATTATGCCTCTCCGGACGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
** ** *
14324870 GGAGTTCATTCCCA-GTCTAAGATCGGATCG
129 GGAGTTCATT-CCATGTCTAAGCCCCAACCG
* * * * * *
14324900 GACCGAGGGTTGCAGCAGCAAGATCGACAGGATGCAGAGGGGATAGGGCCGATCCCCAGTTTGTA
1 GACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGACAGGGCCGATCCCCGGCTTGTG
* * *
14324965 CATTTTACCTCTCC-GACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
66 CATTATGCCTCTCCGGA-CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * *
14325029 AAGTTCATTCCGTGTCTAAGCCCCAGCCG
130 GAGTTCATTCCATGTCTAAGCCCCAACCG
* * *
14325058 GACCGAGAGTT-CTGACAGCAGGATCGACAG
1 GACCGAGGGTTGCAG-CAGCAAGATCGACAG
14325088 TGGGATCGGC
Statistics
Matches: 275, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 31 0.11
158 120 0.44
159 119 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGACAGGGCCGATCCCCGGCTTGTG
CATTATGCCTCTCCGGACGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAACCG
Found at i:14325012 original size:158 final size:156
Alignment explanation
Indices: 14324548--14325048 Score: 495
Period size: 159 Copynumber: 3.2 Consensus size: 156
14324538 CCTAGTCTAA
* * * **
14324548 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTACGGCAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * ** * * *
14324613 GCA-CATAGGGGGACTGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACTGACTGAGGGCC
66 GCAGCAGA-GGGGA-TGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGCC
* * * *
14324677 CACACGCCCATTTCGTCGGTTGGCTGAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* ** ** * * * **
14324705 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGAGT-GA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAAGA-TCGA
* ** * *
14324768 CAGCACGCAGTAGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGC
64 CAGCA-GCAG-AGGGGA-TGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGC
* **
14324833 GCCCGCATGCTCATTTCGTGGGTTAACTTAG
126 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
14324864 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * *
14324929 GGATGCAGAGGGGATAGGGCCGATCCCCAGTTTGTACATTTTACCTCTCCGACCGACTGAGCGCC
66 GCA-GCAGAGGGGAT-GGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGCC
*
14324994 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* **
14325022 GCATACGAAGTTCATTCCGTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
14325049 CCCCAGCCGG
Statistics
Matches: 272, Mismatches: 64, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
156 3 0.01
157 47 0.17
158 96 0.35
159 122 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACA
GCAGCAGAGGGGATGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:14325236 original size:26 final size:26
Alignment explanation
Indices: 14325206--14325258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14325196 GTTGACTTAG
14325206 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14325232 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14325258 G
1 G
14325259 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14326748 original size:25 final size:26
Alignment explanation
Indices: 14326708--14326759 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
14326698 GTTGGCTTAG
*
14326708 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
14326734 GCATACAGA-TTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
14326759 G
1 G
14326760 ATTTTTAGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:14327428 original size:11 final size:11
Alignment explanation
Indices: 14327412--14327436 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14327402 ACCACCGCGA
14327412 GAGCATCGTCG
1 GAGCATCGTCG
14327423 GAGCATCGTCG
1 GAGCATCGTCG
14327434 GAG
1 GAG
14327437 AGCCTAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:14330075 original size:26 final size:26
Alignment explanation
Indices: 14330039--14330091 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14330029 GTTGACTTAG
14330039 GCATACAGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
14330065 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14330091 G
1 G
14330092 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14330544 original size:158 final size:158
Alignment explanation
Indices: 14330065--14330565 Score: 467
Period size: 159 Copynumber: 3.2 Consensus size: 158
14330055 CCAAGTCTAA
* * * * *
14330065 GCATACAGAGTTCATTCCCA-GTCTAAGATTAGATCGGACCGAAGGTTGCGGCAGCAAGATTGAT
1 GCATACAGAGTTCA-TCCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * ** * * * * *
14330129 AGCACG-TAGGGGGATTGGGCCGATCTTTGGCTTGCGTATTCTGCCTCTCCGATCAGCTGAGTGC
65 AGCACGATGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGTGC
* *
14330193 CCGCACGCCCATTCTGTGGGTTGGCTTAG
130 CCGCACGCTCATTTTGTGGGTTGGCTTAG
* ** * ** * * *
14330222 TCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACAGAGTTCATCCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * * * *
14330286 AGCACGCA-GAAGGGGACCGGGTCGAT-CCTCGGCTTGTGCATTATGCCTCTTCAGTCGACTCAA
65 AGCACG-ATG-GGGGGACTGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTTCGGTCGGCTGAG
** * *
14330349 TGCCCGCACGCTCATTTCATGGGTTGACTTAT
127 TGCCCGCACGCTCATTTTGTGGGTTGGCTTAG
* *
14330381 CCATACAGAGTTCAGTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACAGAGTTCA-TCCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * *
14330445 AGCACGATGGGGGGACTGGGCCGATCCCTAGCTTACGCATTATGCCTCTTCGGCCGGCTGAGCGC
65 AGCACGATGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGTGC
** *
14330510 TTGCACACTCATTTTGTGGGTTGGCTTAG
130 CCGCACGCTCATTTTGTGGGTTGGCTTAG
*
14330539 GCATAC-GAAGTTCATTCCATGTCTAAG
1 GCATACAG-AGTTCATCCCATGTCTAAG
14330566 CATACGGAGT
Statistics
Matches: 264, Mismatches: 68, Indels: 23
0.74 0.19 0.06
Matches are distributed among these distances:
156 4 0.02
157 53 0.20
158 87 0.33
159 116 0.44
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACAGAGTTCATCCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGATGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGTGCC
CGCACGCTCATTTTGTGGGTTGGCTTAG
Found at i:14330576 original size:26 final size:26
Alignment explanation
Indices: 14330539--14330591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14330529 GTTGGCTTAG
14330539 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
* *
14330565 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
14330591 G
1 G
14330592 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14330966 original size:26 final size:26
Alignment explanation
Indices: 14330937--14330989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14330927 GTTGACTTAG
* *
14330937 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
*
14330963 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
14330989 G
1 G
14330990 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:14332207 original size:26 final size:26
Alignment explanation
Indices: 14332177--14332229 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14332167 GTTGACTTAG
* *
14332177 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGGTCATTCCC-AGTCTAA
14332203 GCATACGAAGGTCATTCCCAGTCTAA
1 GCATACGAAGGTCATTCCCAGTCTAA
14332229 G
1 G
14332230 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATTCCCAGTCTAA
Found at i:14332429 original size:158 final size:158
Alignment explanation
Indices: 14332203--14332705 Score: 535
Period size: 158 Copynumber: 3.2 Consensus size: 158
14332193 CCTAGTCTAA
* * * * * *
14332203 GCATACGAAGGTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACA
** * * *
14332268 GCACGCAGGGGGGATTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* * **
14332333 CACACGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * *
14332361 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACTGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGACC-AGACCAGACTGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
14332424 CAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGTGCATTATGGCTCTTCGGTCAGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
* * * *
14332489 GCCCGCACTCTCATTTTGTGAGTTGACTTAG
128 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * * * * *
14332520 GCTTACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAATTGAGAGTTGTGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAG-ACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * ** *
14332584 AGTACGTAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGACCGACTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
14332649 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
14332678 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
14332706 GTTTGAGCCA
Statistics
Matches: 275, Mismatches: 64, Indels: 12
0.78 0.18 0.03
Matches are distributed among these distances:
157 3 0.01
158 153 0.56
159 116 0.42
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
CGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:14333708 original size:159 final size:154
Alignment explanation
Indices: 14333400--14334354 Score: 639
Period size: 159 Copynumber: 6.2 Consensus size: 154
14333390 CCTAGTCTAA
* * * * *
14333400 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAG--CAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * **
14333464 AGCACGCATGGGGGACCGGGCCGATCCTCGACTTAG-GCATTCTGCCTCTCCGGTCGGCTGAGTG
62 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTT-GCGCATTCTACCTCTCCGG-CGGCTGAGCA
* * * *
14333528 CCCGTACGCCCGTTTCGTGGGTTGGCTTAG
125 CCTGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *
14333558 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAG---CAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * ** * * * *
14333623 GCACGTAGAGGTGGACCGGGTCGATCCTCAACTTACGCATTATACCTCTTCGGTCGGCTCAGCAC
63 GCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGG-CGGCTGAGCAC
* * *
14333688 CTGCACGCTCATTTCTTGGGTTGACTTAT
126 CTGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
14333717 ACATATGGAG-----TCCA--T-T---C--CCAGACCGAGGGTTGTAGCAGCAGGATCAACAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * ** * * * **
14333769 TGTATGGGGGGACTGGGCTGATCCCCGGCTTGTACTTTCTACCTCTCCGACCGACTGAGCACCCA
66 CGTA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG-GCGGCTGAGCACCTG
* * *
14333834 TACGCTCGTTTCATGGGTTGGCTTAG
129 CACGCTCATTTCGTGGGTTGGCTTAG
* ** * *
14333860 GCATACGGAGTTCATTCCATGTCTAAG-A-TC--ATTGA--CTT-AGGCAGCAGGATCGACAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * * * * *
14333918 CGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTGGTTGAGCGTCC-G
66 CGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGC-GGCTGAGC-ACCTG
* * * *
14333982 TAAGCCCATTTCGTGGGTTGGCTTAA
129 CACGCTCATTTCGTGGGTTGGCTTAG
* * * *
14334008 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTTGCAGCAGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG---CAGCCGGACCGAGGGTTGTGGCAGCAGGATC-GAC
* * * * * * * * * *
14334072 AGCACGCAGAGAGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCAGCTTAGCG
62 AGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG-GCGGCTGAGCA
* *
14334137 CCTGCACGCTCATTTCGTGGGTTGACTTAT
125 CCTGCACGCTCATTTCGTGGGTTGGCTTAG
*
14334167 GCATACGGAGTTTATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAG--CAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
14334231 AACACATAGGGGAGGATCGGGCCGATCCCCGGCTTGGGCATTCTACCTCTCCGGCTGGCTAAGCG
62 AGCACGTAGGGG-GGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGC-GGCTGAGC-
* * *
14334296 CCCT-CACGTTCATTTCGTTGGTTGGCTTAG
124 ACCTGCACGCTCATTTCGTGGGTTGGCTTAG
14334326 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
14334355 TACGGAGTTC
Statistics
Matches: 614, Mismatches: 142, Indels: 83
0.73 0.17 0.10
Matches are distributed among these distances:
143 99 0.16
144 1 0.00
145 1 0.00
147 1 0.00
148 94 0.15
149 21 0.03
150 3 0.00
151 2 0.00
152 5 0.01
153 2 0.00
154 5 0.01
155 3 0.00
157 8 0.01
158 81 0.13
159 282 0.46
160 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
CGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCGGCTGAGCACCTGCA
CGCTCATTTCGTGGGTTGGCTTAG
Found at i:14334362 original size:26 final size:26
Alignment explanation
Indices: 14334326--14334378 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14334316 GTTGGCTTAG
14334326 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14334352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14334378 G
1 G
14334379 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14335402 original size:159 final size:161
Alignment explanation
Indices: 14335159--14335601 Score: 477
Period size: 164 Copynumber: 2.8 Consensus size: 161
14335149 CAGGATCAGT
* ** *
14335159 AGCACGCA-AGGGGGA-CCGAACCGATCCCTGGCTTGCACATTCTGCCT-TTCCGGTAAGCTGAG
1 AGCACGCAGAGGGGGACCCG-ACCGATCCCCGGCTTGTGCATTCTGCCTCTT-CGGTCAGCTGAG
* * * *
14335221 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATC-CCCA
64 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAATCAACCA
* *
14335285 G-CCAGACCGAGGGTTGTGGCAG-CGGGACCGAC
129 GACCAGACCGAGGGTTGCGCCAGTC-GGACCGAC
* * *
14335317 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCAGCTCAGCG
1 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCAGCTGAGCG
* * * * *
14335382 CCCGCACTCTCTTTTTGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCA-GTCTAAGATCAGAT
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATT-CCATGTCT-A-ATCA-AC
* *
14335446 CGGACCAGACCGAGGGTTGCGCCAGTCGGATCGAC
127 CAGACCAGACCGAGGGTTGCGCCAGTCGGACCGAC
* * * ** * * * *
14335481 AGCTCGTAGGGGGGGACAGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGATCGGCTGAGCG
1 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCAGCTGAGCG
** * *
14335546 TTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGAAGTTCATTCCATGTCTAA
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAA
14335602 GCATACAGAG
Statistics
Matches: 234, Mismatches: 40, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
158 7 0.03
159 86 0.37
160 9 0.04
161 3 0.01
162 1 0.00
163 6 0.03
164 121 0.52
165 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (161 bp):
AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCAGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAATCAACCAGA
CCAGACCGAGGGTTGCGCCAGTCGGACCGAC
Found at i:14335521 original size:164 final size:161
Alignment explanation
Indices: 14335102--14335602 Score: 475
Period size: 164 Copynumber: 3.1 Consensus size: 161
14335092 TAAACATACA
* * * * * * *
14335102 GAGTTCATTCC-TAGTCTAAGATCA-GA-CCAGAACGAGCGTTGCGACAGCAGGATC-AGTAGCA
1 GAGTTCATTCCAT-GTCTAAGATCACCAGCCAGACCGAGGGTTGCGCCAGCGGGACCGA-CAGCA
* * ** *
14335163 CGCA-AGGGGGAC-CGAACCGATCCCTGGCTTGCACATTCTGCCT-TTCCGGTAAGCTGAGCGCC
64 CACAGAGGGGGACACG-ACCGATCCCCGGCTTGTGCATTCTGCCTCTT-CGGTCAGCTGAGCGCC
* * *
14335225 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
127 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACG
* * *
14335260 GAGTTCATTCCATGTCT-A-ATCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACA
1 GAGTTCATTCCATGTCTAAGATCACCAGCCAGACCGAGGGTTGCGCCAGCGGGACCGACAGCACA
* * *
14335323 CAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCA
66 CAGAGGGGGACACGACCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCAGCTGAGCGCCCGCA
* * * *
14335388 CTCTCTTTTTGTGGGTTGACTTAGGCTTACG
131 CGCTCGTTTCGTGGGTTGGCTTAGGCTTACG
* * *
14335419 GAGTTCATTCCCA-GTCTAAGATCAGATCGGACCAGACCGAGGGTTGCGCCAGTC-GGATCGACA
1 GAGTTCATT-CCATGTCTAAGATC--ACCAG-CCAGACCGAGGGTTGCGCCAG-CGGGACCGACA
* ** * * * * * * *
14335482 GCTCGTAGGGGGGGACAGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCGATCGGCTGAGCGT
61 GCACACAGAGGGGGACACGACCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCAGCTGAGCGC
* *
14335547 TCGTACGCTCGTTTCGTGGGTTGGCTTAGGCTTACG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACG
*
14335583 AAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
14335603 CATACAGAGT
Statistics
Matches: 279, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 2 0.01
158 44 0.16
159 89 0.32
160 8 0.03
161 3 0.01
163 5 0.02
164 124 0.44
165 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (161 bp):
GAGTTCATTCCATGTCTAAGATCACCAGCCAGACCGAGGGTTGCGCCAGCGGGACCGACAGCACA
CAGAGGGGGACACGACCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCAGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAGGCTTACG
Found at i:14337381 original size:171 final size:171
Alignment explanation
Indices: 14337092--14337531 Score: 480
Period size: 171 Copynumber: 2.6 Consensus size: 171
14337082 CCACCCGTTC
* * * * * * * *
14337092 GATCCTCGACTTGCGCATCCTGCCTTTCTGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCTCGGCTGGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTT
* *
14337157 GACTTAGGCATATGGAGTTCATTCACAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGG
66 GACTTAGGCATACGGAGTTCATTCACAGTCTAAGACCAGATCGGACCGAGGGTTGCGACAGCAGG
*
14337222 ACCAACAGCAGGAAT-GGCAGCACGTA-AGGTGGGACCGGG-T
131 ACCAACAGCAGG-ATCGACAGCACGTAGAGG-GGGACCGGGCT
* *
14337262 CGATCC-CTGGCTGGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGTATGCTCGTTTCATGGG
1 -GATCCTC-GGCTGGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGG
* * * * * * * *
14337326 TCGGCTTAGACATACGTAGTTCATTCA-ATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAG
64 TTGACTTAGGCATACGGAGTTCATTCACA-GTCTAAG-ACCAGATCGGACCGAGGGTTGCGACAG
*
14337389 CAGGACCAGCAGCAGGATCGACAGCACGTAGAGGGGGACCGGGCT
127 CAGGACCAACAGCAGGATCGACAGCACGTAGAGGGGGACCGGGCT
* ** * * * * * *
14337434 GATCCTCGGCTTGTACACTATGCCTCTTCAGCCGGCTGAGCGCTCGCAT-CTCGTTTCGTGGGTT
1 GATCCTCGGCTGGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTT
* *
14337498 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 GACTTAGGCATACGGAGTTCATTCACAGTCTAAG
14337532 CATATGGAGT
Statistics
Matches: 222, Mismatches: 39, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
170 44 0.20
171 170 0.77
172 8 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (171 bp):
GATCCTCGGCTGGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCACAGTCTAAGACCAGATCGGACCGAGGGTTGCGACAGCAGG
ACCAACAGCAGGATCGACAGCACGTAGAGGGGGACCGGGCT
Found at i:14337541 original size:26 final size:26
Alignment explanation
Indices: 14337505--14337556 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14337495 GTTGACTTAG
14337505 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14337531 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14337557 AATTGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14338042 original size:26 final size:26
Alignment explanation
Indices: 14338006--14338058 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14337996 GTTGGCTTAG
14338006 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14338032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14338058 G
1 G
14338059 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14338756 original size:25 final size:26
Alignment explanation
Indices: 14338722--14338773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14338712 CTGGACTTAG
14338722 GCATACGGAG-TCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14338747 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14338773 G
1 G
14338774 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14339452 original size:26 final size:26
Alignment explanation
Indices: 14339416--14339468 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14339406 GTTGACTTAC
*
14339416 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14339442 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14339468 G
1 G
14339469 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14339743 original size:159 final size:160
Alignment explanation
Indices: 14339512--14339944 Score: 423
Period size: 159 Copynumber: 2.7 Consensus size: 160
14339502 CGGTAGCATG
* ** * * * * * *
14339512 CAGGGA-GGACTGAGTCGATCCCTGGCCTACACATTCTGCCTCTAT-GACTGGCTGAGCACCCGC
1 CAGGGAGGGACTGGGTCGATCCCCAGCTTACGCATTATGCCTCTCTAGGCTGGCTGAGCGCCCGC
* * * * * ***
14339575 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CTGTGTCTAA-ACCCCTGTCAAA
66 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTCTAAGA-CCCAACCAAA
* ** **
14339638 CCGAGGGCTGTGGTAGTGAGACCGACAGCATG
129 CCGAGGGCTGTGGCAGCAAGACCGACAGCACA
* *
14339670 CAGAGG-GGGA-TCGGGTCGATCCCCAGCTTACGCATTATGCCTCT-TCGGCTGGCTCAGCGCCC
1 CAG-GGAGGGACT-GGGTCGATCCCCAGCTTACGCATTATGCCTCTCTAGGCTGGCTGAGCGCCC
* * * * *
14339732 GCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCGAACCAGA
64 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCCAACCAAA
* *
14339797 CCGAGGGTTGTGGCAGCAAGATCGACAGCACA
129 CCGAGGGCTGTGGCAGCAAGACCGACAGCACA
* * * * *
14339829 CAGGGAGGGACTGGGTCGATCCCCGGCTTGCGTATTTTGCCTCTCTAGTC-GGCTGAGCGCCCGC
1 CAGGGAGGGACTGGGTCGATCCCCAGCTTACGCATTATGCCTCTCTAGGCTGGCTGAGCGCCCGC
* * *
14339893 ACGTTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
66 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
14339945 CATATGGAGT
Statistics
Matches: 225, Mismatches: 41, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
158 7 0.03
159 211 0.94
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
CAGGGAGGGACTGGGTCGATCCCCAGCTTACGCATTATGCCTCTCTAGGCTGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCCAACCAAACC
GAGGGCTGTGGCAGCAAGACCGACAGCACA
Found at i:14340813 original size:26 final size:26
Alignment explanation
Indices: 14340784--14340836 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14340774 GAGGGCTTAG
14340784 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
14340810 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
14340836 G
1 G
14340837 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:14341017 original size:26 final size:26
Alignment explanation
Indices: 14340981--14341033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14340971 GTTGAATTAG
*
14340981 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14341007 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14341033 G
1 G
14341034 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14341363 original size:26 final size:26
Alignment explanation
Indices: 14341324--14341383 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
14341314 GTTGACTTAG
14341324 GCATACAGACTTCATCCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
* * *
14341350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
14341376 G-AT-CAGAC
1 GCATACAGAC
14341384 CGGACTGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 24 0.83
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGACTTCATCCCCAGTCTAA
Found at i:14342202 original size:159 final size:159
Alignment explanation
Indices: 14341901--14342402 Score: 541
Period size: 158 Copynumber: 3.2 Consensus size: 159
14341891 CCCAGTCTAA
* * * * **
14341901 GCATACAGAGTTCATTCCCA-GTCTAA-AATCAAACCAGACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGGATCAGACCGGACCGAAAGTTGTGGCAGCAGGATCGA
* * * * *
14341964 TAGCAAGCAGGGGGGACCGGGCCGATCCCCGGCTTTCGTATTCTGCCTCTTCGGTCGGTTGAGCT
65 TAGCAAGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
*
14342029 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
14342059 GCATAGGGAGTTCATTCCATGTCTAAGGCA-CA-ATCGGACTGAAAGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCATGTCTAAGG-ATCAGACCGGACCGAAAGTTGTGGCAGCAG-GATCG
* * * * * *
14342121 ACAGCATGCAGAGGGGGACCGGGCCTATCCCCGGCTTACGCATTATTCCTCTCCGGTCGGCTCAG
64 ATAGCAAGCAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAG
* * * *
14342186 CGCTCGCAAGCTCGTTTCGTGGGTTGACTTAT
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
14342218 GCATACGGAATTAATT-CATGGTCTAA-GATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAA
1 GCATACGGAGTTCATTCCAT-GTCTAAGGATCAGACCGGACCGAAAGTTGTGGCAGCAGGATCGA
* * * * ** *
14342281 TAGCACGTAGGGGGGACCGGGACGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTG
65 TAGCAAGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
**
14342346 CCCGCACGCTCGTTTTATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
14342376 GCATACGGAGTTCATTCCATGCCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14342403 CATTACGGAG
Statistics
Matches: 278, Mismatches: 55, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 146 0.53
159 125 0.45
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGGATCAGACCGGACCGAAAGTTGTGGCAGCAGGATCGAT
AGCAAGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14343156 original size:25 final size:26
Alignment explanation
Indices: 14343112--14343163 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
14343102 GTTGACTTAG
*
14343112 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14343138 GCATAC-GAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14343163 G
1 G
14343164 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14343345 original size:26 final size:26
Alignment explanation
Indices: 14343295--14343347 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14343285 GTTGGCTTAG
* ***
14343295 GCATACGTAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14343321 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14343347 G
1 G
14343348 AGCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14344058 original size:26 final size:26
Alignment explanation
Indices: 14344028--14344077 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14344018 GACTTAGACG
14344028 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
14344054 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
14344078 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:14344139 original size:355 final size:361
Alignment explanation
Indices: 14343421--14344258 Score: 925
Period size: 355 Copynumber: 2.3 Consensus size: 361
14343411 GACCAGGCCA
* * * * *
14343421 ATCCCCGACTTGCGCATTCTGCCCCTCCCACCGGTTGAGCGCTCGTACGCTCGTTTCATGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * *
14343486 GCTTAGGCATACAGAGTTCTTTCCATGTCT-A----AGCCGGA-TCGAGGGTTGTGACAGCGAGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACT-GAGGGTTGTGGCAGAGAGA
* ** * ** *
14343545 CTGGCAGCGGGATCGCCAGCATGCAGAGGGGGACCAAGCTGATCCCCGGCTTGCACATTATGCCT
130 CCGAAAGCGGGATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCAGCTTGCACATTATGCCT
* * *
14343610 CTCCGACCGGCCTCTCCGGTCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTCACTTAGGCATA
195 CTCC-ACCGG---C-CCGG-CGACTGAACGCCCACACGCTCGTTTCATGGGTTCACTTAGACATA
* ** * * *
14343675 CAAAGTTCATCCCCATTCTAAGCATATTGAGTTCATTCCCAGTCTAAGATCGGATCGGATAAAGG
254 CAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAAGG
* * * * * *
14343740 GTTGTAGCAGCAAGATTGGTAGCATGCAGGGGGGACCAAGTCG
319 GTTATAGCAGCAAGATCGGTAGCACGAAAGGGCGACCAAGTCG
** * *
14343783 ATCCCCGACTTGTGCATTCTGCCCCTCCGACTAGCTGAGCACCCGCACGCTCATTTCATGGGTTG
1 ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
14343848 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCCAGCCGGACTGAGGGTTGTGGCAGTAG-G
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACTGAGGGTTGTGGCAG-AGAG
* * *
14343912 ACCGAAAGCGGGATCGACAGCACACTGAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTATG-C
129 ACCGAAAGCGGGATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCAGCTTGCACATTATGCC
* * * **
14343976 -CTCC-CCGG-CC-G-G-CTGAACGCCCACATGCTCGTTTCATGGGTTGACTTAGACGTACGGAG
194 TCTCCACCGGCCCGGCGACTGAACGCCCACACGCTCGTTTCATGGGTTCACTTAGACATACAAAG
**
14344035 TTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAT
259 TTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAAGGGTTAT
* * *
14344100 -GACAGCAGGATCGGTAGGACGAAAGGGCGACCGAGTCG
324 AG-CAGCAAGATCGGTAGCACGAAAGGGCGACCAAGTCG
* * * * * * * * *
14344138 ATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTAAGTGCCCACATGCCCGTTTCATGGGTT-
1 ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
14344202 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGGCTGAGGTTTGTGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACTGAGGGTTGTGG
14344259 TAGTGGGATC
Statistics
Matches: 402, Mismatches: 65, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
354 54 0.13
355 174 0.43
356 1 0.00
358 1 0.00
359 2 0.00
362 84 0.21
363 1 0.00
364 4 0.01
366 4 0.01
367 1 0.00
368 74 0.18
369 2 0.00
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (361 bp):
ATCCCCGACTTGTGCATTCTGCCCCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACTGAGGGTTGTGGCAGAGAGAC
CGAAAGCGGGATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCAGCTTGCACATTATGCCTC
TCCACCGGCCCGGCGACTGAACGCCCACACGCTCGTTTCATGGGTTCACTTAGACATACAAAGTT
CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAAAGGGTTATAG
CAGCAAGATCGGTAGCACGAAAGGGCGACCAAGTCG
Found at i:14344930 original size:26 final size:26
Alignment explanation
Indices: 14344894--14344946 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14344884 GTTGACTTAG
14344894 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAGTCTAA
14344920 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
14344946 G
1 G
14344947 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:14347119 original size:26 final size:26
Alignment explanation
Indices: 14347083--14347134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14347073 TTGGCTTAGC
14347083 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
14347109 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
14347135 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:14347599 original size:26 final size:26
Alignment explanation
Indices: 14347569--14347621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14347559 GTTGACTTAG
*
14347569 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGACTTCATTCCC-AGTCTAA
14347595 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
14347621 G
1 G
14347622 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:14347928 original size:159 final size:159
Alignment explanation
Indices: 14347690--14348097 Score: 452
Period size: 159 Copynumber: 2.6 Consensus size: 159
14347680 CGGTCCCCGG
* ** * * * * * * *
14347690 CTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCCCACGCCCATTTCGTGGGTTGGCTTAGGC
1 CTTACGCATTCTACCTCTCCGGTCGACTCAGTGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGC
* *
14347755 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACC-G-ACA
66 ATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTCGCAGCGGGACCAGTA-A
* *
14347818 GCACGTAAATGGGGACCGAGCCAATCCCTAG-
130 -CACGCAAAGGGGGACCGAGCCAATCCC-AGA
*
14347849 CTTGCGCATTAC-ACCTCTCCGGTC-AGCTCAGTGCCCGCACG-TCCGTTTCATAGGTTGGCTTA
1 CTTACGCATT-CTACCTCTCCGGTCGA-CTCAGTGCCCGCACGCT-CGTTTCATAGGTTGGCTTA
* * *
14347911 GGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTCGCAGTGGGACCAGT
63 GGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTCGCAGCGGGACCAGT
* * * *
14347976 AACAGGCAGAGGGGGACCGAGCCAGTCCCCGA
128 AACACGCAAAGGGGGACCGAGCCAATCCCAGA
* * * * *
14348008 CTTACTCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTACGCATTCTACCTCTCCGGTCGACTCAGTGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGC
*
14348073 ATACAGAGTTCATTCCCA-GTCTAAG
66 ATAGAGAGTTCATT-CCATGTCTAAG
14348098 AGTTTGAGCC
Statistics
Matches: 210, Mismatches: 29, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
158 3 0.01
159 198 0.94
160 8 0.04
161 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (159 bp):
CTTACGCATTCTACCTCTCCGGTCGACTCAGTGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGC
ATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTCGCAGCGGGACCAGTAAC
ACGCAAAGGGGGACCGAGCCAATCCCAGA
Found at i:14349327 original size:26 final size:26
Alignment explanation
Indices: 14349297--14349348 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14349287 GTTGACTTAG
14349297 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
14349323 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14349349 TATCAAACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14350389 original size:26 final size:26
Alignment explanation
Indices: 14350359--14350414 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14350349 TGGGTTGATT
*
14350359 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
* *
14350385 TAAGCAGATGGAGTTCATTCCCAGTC
1 TAAGCAGACGGAGTTCATCCCCAGTC
14350411 TAAG
1 TAAG
14350415 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATCCCCAGTC
Found at i:14350801 original size:155 final size:157
Alignment explanation
Indices: 14350496--14350872 Score: 433
Period size: 155 Copynumber: 2.4 Consensus size: 157
14350486 CGGTTGACTG
* * * * *
14350496 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCC
1 AGCGCCCGTACGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * * *
14350561 AGCCGGACTGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGG
65 AGCCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCACACAGAGGGGGATCGGGCCGATCCCCAG
* *
14350626 CTTGCGCATTATGCCTCTCCGACCAGCTC
130 CTTACGCATTATG-CTCTCCGACCAGCTA
* * * * **
14350655 AGCGCCCGTACGCTCATTTCGTGGTTGACTTAGGCGTACGGAGTTCATTCC-CGTCTAAG-ATTA
1 AGCGCCCGTACGCTCGTTTCGTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
* *
14350718 GACCGGACCGAGGGTTGTGGTAGTAGGA-TCGACAGCACACAG-GGGGGAT-GGGCCGATCCCCA
66 G-CCGGACCGAGGGTTGTGGCAGCAGGACT-GACAGCACACAGAGGGGGATCGGGCCGATCCCCA
**
14350780 GCTTACGCATTTTATG-TCTCCGACTGGCTA
129 GCTTACGCA--TTATGCTCTCCGACCAGCTA
* * *
14350810 AGCGCCCATACACTCGTTTCGTGAGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 AGCGCCCGTACGCTCGTTTCGTG-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14350873 TATGGAGTTC
Statistics
Matches: 183, Mismatches: 28, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
155 51 0.28
156 35 0.19
157 51 0.28
158 27 0.15
159 19 0.10
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCGCCCGTACGCTCGTTTCGTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
GCCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCACACAGAGGGGGATCGGGCCGATCCCCAGC
TTACGCATTATGCTCTCCGACCAGCTA
Found at i:14350873 original size:26 final size:25
Alignment explanation
Indices: 14350844--14350895 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14350834 GTTGGCTTAG
14350844 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCA-GTCTAA
14350870 GCATATGGAGTTCATTCCAGTCTAA
1 GCATATGGAGTTCATTCCAGTCTAA
14350895 G
1 G
14350896 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATATGGAGTTCATTCCAGTCTAA
Found at i:14351406 original size:26 final size:26
Alignment explanation
Indices: 14351356--14351408 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14351346 GTTGGCTTAC
* *
14351356 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
14351382 GCATACAGAGTTCATTCTCA-ATCTAA
1 GCATACAGAGTTCATTC-CATATCTAA
14351408 G
1 G
14351409 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:14351589 original size:26 final size:26
Alignment explanation
Indices: 14351553--14351605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14351543 GTTGACTTAG
* *
14351553 GCATGCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
14351579 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14351605 G
1 G
14351606 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14351817 original size:20 final size:21
Alignment explanation
Indices: 14351767--14351820 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
14351757 GTCTAAGCCC
*
14351767 CAGCCGGACCGAGGGTTGTGG
1 CAGCCGGACCGATGGTTGTGG
14351788 CAGCCGGACCGATGGTTGTGG
1 CAGCCGGACCGATGGTTGTGG
14351809 CAG-CGGACCGAT
1 CAGCCGGACCGAT
14351821 AGCACCCAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.17, C:0.26, G:0.43, T:0.15
Consensus pattern (21 bp):
CAGCCGGACCGATGGTTGTGG
Done.