Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 108 of 402
Found at i:14352028 original size:26 final size:26
Alignment explanation
Indices: 14351992--14352044 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14351982 CACGCAGGGG
* *
14351992 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14352018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14352044 G
1 G
14352045 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14353109 original size:26 final size:26
Alignment explanation
Indices: 14353060--14353109 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
14353050 GACTTAGGCG
*
14353060 TACGAAGTTCATCCCTAGTTTAAGCA
1 TACGAAGTTCATCCCTAGTCTAAGCA
*
14353086 TACGGAGTTCATTCCC-AGTCTAAG
1 TACGAAGTTCA-TCCCTAGTCTAAG
14353110 ATCAGATCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATCCCTAGTCTAAGCA
Found at i:14353581 original size:157 final size:156
Alignment explanation
Indices: 14353083--14353570 Score: 511
Period size: 157 Copynumber: 3.1 Consensus size: 156
14353073 CCTAGTTTAA
* * * * *
14353083 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCAGGATTGACA
* * * * * * * *
14353148 GCACAGAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCACC
66 GCACACAGGGGGGACCGGGCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGA-CAGCTAAGCGCC
14353213 CGCACGC-CTATTTCGTGGGTTGGCTTAG
129 CGCACGCTC-ATTTCGTGGGTTGGCTTAG
* ** * * * * *
14353241 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCGG-TTGGACCGAGGGTTGTGGCAGCGGGACTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGATCGAGGGTTGTGACAGCAGGATTGA
* * * * * * * * *
14353304 CAGCACGCAGAGGGGGACCGAGCTAATCCCCGGTTTGCACATTATGCCCCTCCGACTGCTCAA-A
64 CAGCACACAG-GGGGGACCGGGC-AGTCCCCGGCTTGCGCATTCTGCCTCTCCGACAGCT-AAGC
14353368 GCCCGCACGCTCATTTCGT-GGTTGGCTTAG
126 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
14353398 GCACACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTATGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCAGGATTGACA
** *
14353463 GCACACAGGGGACACCGGGTCAGTCCCCGGCTTACGCATTCTGCCTCTCCGACAAGCTAAGCGCC
66 GCACACAGGGGGGACCGGG-CAGTCCCCGGCTTGCGCATTCTGCCTCTCCGAC-AGCTAAGCGCC
* *
14353528 CGCACACTCGTTTCGTGGGTT-GCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
14353555 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
14353571 TCATGTCTAA
Statistics
Matches: 264, Mismatches: 54, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 39 0.15
157 110 0.42
158 77 0.29
159 38 0.14
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCAGGATTGACA
GCACACAGGGGGGACCGGGCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGACAGCTAAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:14353604 original size:26 final size:26
Alignment explanation
Indices: 14353555--14353607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14353545 GGTTGCTTAG
*
14353555 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14353581 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
14353607 G
1 G
14353608 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14354142 original size:26 final size:26
Alignment explanation
Indices: 14354106--14354158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14354096 GTTGACTTAG
14354106 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14354132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14354158 G
1 G
14354159 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14354219 original size:184 final size:185
Alignment explanation
Indices: 14353898--14354317 Score: 471
Period size: 184 Copynumber: 2.3 Consensus size: 185
14353888 AGCGCCCATA
* * * * *
14353898 CGCTCGTTTCGTGTGTTAACTTAGGCATACGGAGCTCATCCCTAGTCTAAGCATACAGAGTTTAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
* * *
14353963 TCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTACCAGGATCGGTAGCACACGGGAGGGAT
66 TCCCAATCTAAGATCAAACCAGACCGAGGGTTGCAGTACCAGGATCAGCAGCACACGGGAGGGAT
* * * *
14354028 CGGGCCGATCGTCAGG-TTGCACATTTTGCCTCTCC-AGCCAGTTGAGTGCCCGC-T
131 CGGGCCGATC-CCAGGCTTACACATTCTGCCTCTCCGA-CCAGTTGAGCGCCCGCAT
* *
14354082 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
* ** * * *
14354147 TCCCAGTCTAAGATCAAACTGGATCTAGGGTTGC-G-ACAGCAGGATCAGCAGCACGCAGGG-GG
66 TCCCAATCTAAGATCAAACCAGACCGAGGGTTGCAGTAC--CAGGATCAGCAGCACAC-GGGAGG
* * *
14354209 GA-CTGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCTGTTGAGCGCCCGCAT
128 GATC-GGGCCGATCCCAGGCTTACACATTCTGCCTCTCCGACCAGTTGAGCGCCCGCAT
* * * *
14354267 -GCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGC
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
14354318 CCTAGTCGGA
Statistics
Matches: 200, Mismatches: 28, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
182 2 0.01
183 8 0.04
184 185 0.93
185 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (185 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
TCCCAATCTAAGATCAAACCAGACCGAGGGTTGCAGTACCAGGATCAGCAGCACACGGGAGGGAT
CGGGCCGATCCCAGGCTTACACATTCTGCCTCTCCGACCAGTTGAGCGCCCGCAT
Found at i:14354442 original size:159 final size:158
Alignment explanation
Indices: 14354132--14354475 Score: 408
Period size: 159 Copynumber: 2.2 Consensus size: 158
14354122 CCCAGTCTAA
* ** ** * *
14354132 GCATACGGAGTTCATTCCCAGTCTAAGATC-AAACTGGATCTAGGGTTGCGACAGCAGGATCAGC
1 GCATAAGGAGTTCATTCCCAGTCTAAGCCCTAGTC-GGACCTAGGGTTGCGACAGCAGGACCAGC
* ** * * * *
14354196 AGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCTGTTGAGCGC
65 AGCACGCAGGGGGGACTGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCAC
* * *
14354261 CCGCATGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCGATTCATGGGTTGGCTTAG
* *
14354290 GCATAAGGAGTTCATT-CCATGTCTAAGCCCTAGTCGGACCTAGGGTTGTGGCAGCAGGACC-GA
1 GCATAAGGAGTTCATTCCCA-GTCTAAGCCCTAGTCGGACCTAGGGTTGCGACAGCAGGACCAG-
* *
14354353 CAGCACGCAGTGGGGGA-TCGGGTCAATCCCCAGCTTACGCATTCTACCTCTCCGATCGGCTGAG
64 CAGCACGCAG-GGGGGACT-GGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAG
*
14354417 CACCCGCACGCTCGATTCATGGGTTGGCTTAG
127 CACCCGCACGCCCGATTCATGGGTTGGCTTAG
*
14354449 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATAAGGAGTTCATTCCCAGTCTAAG
14354476 AGTTTGAGCC
Statistics
Matches: 157, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
157 4 0.03
158 56 0.36
159 94 0.60
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGCCCTAGTCGGACCTAGGGTTGCGACAGCAGGACCAGCA
GCACGCAGGGGGGACTGGGCCAATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACC
CGCACGCCCGATTCATGGGTTGGCTTAG
Found at i:14354610 original size:26 final size:26
Alignment explanation
Indices: 14354581--14354633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14354571 GTTGGCATAG
14354581 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTTATCCCCAGTCTAA
* * *
14354607 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTTATCCCCAGTCTAA
14354633 G
1 G
14354634 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTTATCCCCAGTCTAA
Found at i:14354793 original size:26 final size:26
Alignment explanation
Indices: 14354764--14354816 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14354754 GTTGGCTTAG
14354764 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
* *
14354790 GCATATGGATTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
14354816 G
1 G
14354817 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:14355885 original size:26 final size:26
Alignment explanation
Indices: 14355856--14355908 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14355846 ATTGACTTAG
*
14355856 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14355882 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14355908 G
1 G
14355909 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14356172 original size:159 final size:157
Alignment explanation
Indices: 14355938--14356225 Score: 423
Period size: 159 Copynumber: 1.8 Consensus size: 157
14355928 TGTGACAGCA
* * * *
14355938 GGATCAGCAGCACGCAGGGGGATCGGGTCGATCTCTGACTTGCGCATTCTGCCCCTCCGGTCGGC
1 GGATCAGCAGCACGCAGGGGGATCGGGCCGATCCCCGACTGGCGCATTCTGCCCCTCCGGTCGGC
* *
14356003 TGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTACGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCGCACGCCCGATTCATGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAAGCC
14356068 CCAGTTGGACCGAGGGTTGCAGTAGCG
131 CCAGTTGGACCGAGGGTTGCAGTAGCG
* * * * *
14356095 GGATCGGCAGCATGCAGAGAGGGATCGGGCCGATCCCCGGCTGGTGCATTCTGCCTCTCCGGTCG
1 GGATCAGCAGCACGCAG-G-GGGATCGGGCCGATCCCCGACTGGCGCATTCTGCCCCTCCGGTCG
* * * *
14356160 GCTGAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
64 GCTGAGCACCCGCACGCCCGATTCATGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAAG
14356225 C
129 C
14356226 ATACAGAGTT
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
157 15 0.13
158 1 0.01
159 98 0.86
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (157 bp):
GGATCAGCAGCACGCAGGGGGATCGGGCCGATCCCCGACTGGCGCATTCTGCCCCTCCGGTCGGC
TGAGCACCCGCACGCCCGATTCATGGGTTGGCTTACGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGTTGGACCGAGGGTTGCAGTAGCG
Found at i:14356234 original size:26 final size:26
Alignment explanation
Indices: 14356198--14356250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14356188 GTTGGCTTAG
*
14356198 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14356224 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14356250 G
1 G
14356251 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14356970 original size:26 final size:26
Alignment explanation
Indices: 14356922--14356972 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14356912 TGAGTTAGCG
*
14356922 ATACGGAGTTCATCCTCATTCTAAGC
1 ATACGGAGTTCATCCTCAGTCTAAGC
14356948 ATACGGAGTTCATTCC-CAGTCTAAG
1 ATACGGAGTTCA-TCCTCAGTCTAAG
14356973 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCTCAGTCTAAGC
Found at i:14357394 original size:158 final size:157
Alignment explanation
Indices: 14356997--14357426 Score: 450
Period size: 159 Copynumber: 2.7 Consensus size: 157
14356987 AGGGTTACGG
* *
14356997 TAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
1 TAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCG
* * * * * *
14357062 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCTAGCT
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGCCTAAGACCGAGCA
* ** ** *
14357127 GAACCGAGGGTTGTGGCAGTGAGACTGG
130 GAACCGAAGGTTGCAGCAGCAAGACTGA
* * * * * *
14357155 CAGCAAGCAGAGGGGGATCGGGTAGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAGC
1 TAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGC
* * * * *
14357220 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGGC
64 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGCCTAAGACCGAG-
* * *
14357285 CAG-ACTGAAGGTTGCAGCCGCAAGATTGA
128 CAGAACCGAAGGTTGCAGCAGCAAGACTGA
* * * * * * *
14357314 TAGCACGTAGGGGGGATCGGGCCGGTCCCCGGCTTGTGCATTCTGTCTCTCCGGTCGGTTGAGCA
1 TAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCG
* * * *
14357379 CCTGCACGCTCGTTTCGTGGG-TGGCTTAGGCATACGAAGTGCATTCCA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
14357427 TGTCTAGGCA
Statistics
Matches: 220, Mismatches: 49, Indels: 7
0.80 0.18 0.03
Matches are distributed among these distances:
157 23 0.10
158 70 0.32
159 124 0.56
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
TAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGCCTAAGACCGAGCAG
AACCGAAGGTTGCAGCAGCAAGACTGA
Found at i:14358170 original size:26 final size:26
Alignment explanation
Indices: 14358132--14358184 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14358122 GTTAACTTAG
*
14358132 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14358158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14358184 G
1 G
14358185 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14358796 original size:184 final size:184
Alignment explanation
Indices: 14358471--14358824 Score: 505
Period size: 184 Copynumber: 1.9 Consensus size: 184
14358461 TGTCTAAGCA
* *
14358471 TACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCA
1 TACGAAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCAGCAGCAGGATCGATAGCA
* * * *
14358536 TGCAGGGGGGACTGGGCCGATCCCTAGCTTACACTTTCTGCCTCTTCGATCGGTTGAGCACCCAC
66 CGCAAGGGGGACTGGGCCGATCCCCAGCTTACACATTCTGCCTCTTCGATCGGTTGAGCACCCAC
*
14358601 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCCTGTTTAAGTG
131 ACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCCTGTTTAAGTG
* * *
14358655 TACGGAGTTCATTCTCAGTCTAAGATCTAAAT-GGATCGAGGGTTGCAGTAGCAGGATCGATAGC
1 TACGAAGTTCATTCCCAGTCTAAGATC-AAATCGGATCGAGGGTTGCAGCAGCAGGATCGATAGC
* ** * * * *
14358719 ACGTAAGGGGGA-TCGGGTTGATCCCCAGCTTGCGCATTCTGCCTTTTCGATCGGTTGAGCACCT
65 ACGCAAGGGGGACT-GGGCCGATCCCCAGCTTACACATTCTGCCTCTTCGATCGGTTGAGCACCC
**
14358783 ACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCAT
129 ACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
14358825 TCCATGTCTA
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
183 1 0.01
184 145 0.97
185 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (184 bp):
TACGAAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCAGCAGCAGGATCGATAGCA
CGCAAGGGGGACTGGGCCGATCCCCAGCTTACACATTCTGCCTCTTCGATCGGTTGAGCACCCAC
ACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCTCCTGTTTAAGTG
Found at i:14358954 original size:159 final size:159
Alignment explanation
Indices: 14358692--14359155 Score: 467
Period size: 159 Copynumber: 2.9 Consensus size: 159
14358682 TAAATGGATC
* * * *
14358692 GAGGGTTGCAGTAGCAGGATCGATAGCACGTA-AGGGGGATCGGGTTGATCCCCAGCTTGCGCAT
1 GAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCAGCTTGCGCAT
* * * * * *
14358756 TCTGCCTTTTCGATCGGTTGAGCACCTACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGT
66 TATGCC-TCTCGATCGGTTGAGCACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
14358821 TCATTCCATGTCTAAGCCCCAGTC-GGATT
130 TTATTCCATGTCTAAGCACCAGACTGGAGT
** * * *
14358850 GAGGGTTGTGGTAGCGGGATCGAC-GATACGCAGAGGGGGATCGGGTCGATCCTCAGCTTGCACA
1 GAGGGTTGCAGTAGCAGGATCGACAG-CACGCAGAGGGGGATCGGGTCGATCCTCAGCTTGCGCA
* * * *
14358914 TTATGCCTCTACAATCGGTTTG-GCACCTGCACACTTGTTTCGTGGGTTAACATAGGCATACGGA
65 TTATGCCTCT-CGATCGG-TTGAGCACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
14358978 GTTTATTTC-TAGTCTAAG-ATCAGACTGGAGT
128 GTTTATTCCAT-GTCTAAGCACCAGACTGGAGT
* * * * *
14359009 GAGGGTTGCAGTAGTAGGATCGACAGCACGCAG-GGTGGCA-CTAGGTCGATCCTCGGCTTGTGC
1 GAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGG-GGGATC-GGGTCGATCCTCAGCTTGCGC
* * * * * * * *
14359072 ATTTTGCCTCTCGATCGGCTGAGCGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCATATGGAG
64 ATTATGCCTCTCGATCGGTTGAGCACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAG
14359137 TTTATTCCATGTCTAAGCA
129 TTTATTCCATGTCTAAGCA
14359156 TACGGAGTTC
Statistics
Matches: 246, Mismatches: 48, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 88 0.36
159 151 0.61
160 4 0.02
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (159 bp):
GAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCAGCTTGCGCAT
TATGCCTCTCGATCGGTTGAGCACCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
TATTCCATGTCTAAGCACCAGACTGGAGT
Found at i:14359163 original size:26 final size:26
Alignment explanation
Indices: 14359127--14359179 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14359117 GTTGGCTTAG
* *
14359127 GCATATGGAGTTTA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
14359153 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
14359179 G
1 G
14359180 ATTCGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:14359544 original size:26 final size:26
Alignment explanation
Indices: 14359507--14359559 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14359497 GTTGACTTAG
14359507 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
14359533 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
14359559 G
1 G
14359560 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14360133 original size:26 final size:26
Alignment explanation
Indices: 14360097--14360149 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14360087 GTTGACTTAG
*
14360097 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATAAGGAGTTCATTCC-CAGTCTAA
14360123 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
14360149 G
1 G
14360150 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:14360650 original size:26 final size:26
Alignment explanation
Indices: 14360598--14360650 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14360588 GTTGGCTTAG
*
14360598 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14360624 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
14360650 G
1 G
14360651 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14361002 original size:26 final size:26
Alignment explanation
Indices: 14360966--14361101 Score: 195
Period size: 26 Copynumber: 5.3 Consensus size: 26
14360956 GTTGACTTAG
*
14360966 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
14360992 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
14361018 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
14361044 GCATACA-GAGTTCATCCCCAGTCTAA
1 GCATA-AGGAGTTCATCCCCAGTCTAA
* **
14361070 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
14361096 G-ATAAG
1 GCATAAG
14361102 ACTAGAATGA
Statistics
Matches: 99, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.04
26 95 0.96
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:14361044 original size:52 final size:52
Alignment explanation
Indices: 14360966--14361101 Score: 222
Period size: 52 Copynumber: 2.6 Consensus size: 52
14360956 GTTGACTTAG
14360966 GCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATCCCCAGTCTAA
*
14361018 GCATACGGAGTTCATCCCCAGCCTAAGCATACA-GAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAAGCATA-AGGAGTTCATCCCCAGTCTAA
**
14361070 GCATACGGAGTTCATTTCCAGTCTAAG-ATAAG
1 GCATACGGAGTTCATCCCCAGTCTAAGCATAAG
14361102 ACTAGAATGA
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
50 1 0.01
51 3 0.04
52 73 0.94
53 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (52 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATCCCCAGTCTAA
Found at i:14361747 original size:159 final size:159
Alignment explanation
Indices: 14361156--14361754 Score: 582
Period size: 159 Copynumber: 3.8 Consensus size: 159
14361146 GAATCGGGCC
* * * * ** * *
14361156 GATCCCCGGCTTGCGCATTCTGCCTC-TCCAGTCGGCTGAGTGCCCGCACGTTTGTTTCGTGGGT
1 GATCCCCGACTTGCGCATTCTGCCTCTTCGA-CCAGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * * * *
14361220 TGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCTGCCAGACTGAGGGTTGTGGCAGTGG
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGG
* *
14361285 TACCGATAGCACACAGAGAGGGA-CAGG-T
130 GACCGATAGCACACAGAGGGGGATCAGGCT
* * * * * ** *
14361313 CGATCCCCGACTTACGCATTATGCCTCTTTGACCAGCTCAGCACCCGTACGCTTATTTTGTGGGT
1 -GATCCCCGACTTGCGCATTCTGCCTCTTCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * ** ** * * *
14361378 TGACTTACGCATACGGAGTTCATTCTCA-GTCTAAG-ATCAGACCAGTTCAAGGGTTGCGATAGC
65 TGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGC
* * ** *
14361441 AGGATCGATAGCATGCAG-GAGGGGATC-GAGCC
128 GGGACCGATAGCACACAGAG-GGGGATCAG-GCT
* * * * * * * *
14361473 GATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCACCCACATGCCCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTTCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * * *
14361538 GGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGG
*
14361603 ACCGACAGCACACAGAGGGGGATCAGGCT
131 ACCGATAGCACACAGAGGGGGATCAGGCT
** *
14361632 GATCCCCGACTTGCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTTCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * *
14361697 GGCTTAGGCATACGGAGGTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG
14361755 CAGTAGGAAC
Statistics
Matches: 346, Mismatches: 84, Indels: 21
0.77 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 109 0.32
159 229 0.66
160 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GATCCCCGACTTGCGCATTCTGCCTCTTCGACCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGG
ACCGATAGCACACAGAGGGGGATCAGGCT
Found at i:14361918 original size:26 final size:26
Alignment explanation
Indices: 14361888--14361940 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14361878 GTTGACTTAG
*
14361888 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14361914 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14361940 G
1 G
14361941 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14362465 original size:26 final size:26
Alignment explanation
Indices: 14362435--14362487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14362425 GTTGACTTAG
14362435 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14362461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14362487 G
1 G
14362488 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14363160 original size:26 final size:26
Alignment explanation
Indices: 14363108--14363160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14363098 GTTGGCTTAG
*
14363108 GCATACGGAGTTCATTCCCTATTTAA
1 GCATACGGAGTTCATTCCCTATCTAA
14363134 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
14363160 G
1 G
14363161 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:14363651 original size:26 final size:26
Alignment explanation
Indices: 14363621--14363673 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14363611 GTTGGCTTAG
14363621 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14363647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14363673 G
1 G
14363674 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14364378 original size:26 final size:26
Alignment explanation
Indices: 14364342--14364391 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14364332 GTTGACTAAG
*
14364342 GCATACGGAGTTCA-TCCCTAGTCTGA
1 GCATACAGAGTTCATTCCC-AGTCTGA
14364368 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
14364392 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:14364749 original size:159 final size:158
Alignment explanation
Indices: 14364368--14364869 Score: 392
Period size: 159 Copynumber: 3.2 Consensus size: 158
14364358 CCTAGTCTGA
* *
14364368 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGAC-AGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGC-ACTAGCAGGATCGAC
* * * * * * * *
14364432 AGCACGCAGGGGGGACCGGGCTAATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGTTGAGCAC
65 AGCACGCAGGAGGGACCGGGCCAATCCTCGACTTACGCATTATGCCTCTCCGACCAGCTCAGCAC
14364497 CCGCACGCCTATTTCGATGGTTGGCTTAG
130 CCGCACGCCTATTTCGATGGTTGGCTTAG
** ** * *** * *
14364526 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTA-ACCAGATCGAGGGTTGTGGTAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATTAGACCGGATCGAGGGTTGCACTAGCAGGATCGA
* * * * * * *
14364589 CAGCACGTAGAGAGGGATCGGGCCGATGCTCGACTTACGTATTATGCCTCTCCGACCAGCTCCGT
64 CAGCACGCAG-GAGGGACCGGGCCAATCCTCGACTTACGCATTATGCCTCTCCGACCAGCTCAGC
* *
14364654 ATCCGCACG-CTCGTTTC-ATGGGTTGGCTTAG
128 ACCCGCACGCCT-ATTTCGAT-GGTTGGCTTAG
* *
14364685 GCATACAGAGTTCATTCCCAGTCTAAGTTTAGATCGGA-CTGAGGGTTGCACTAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGATC-GAGGGTTGCACTAGCAGGATCGAC
* * * * * * * ** * * * * ** * **
14364749 AGCATGCAAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCTGGCTGGCTGAGGG
65 AGCACGC-AGGAGGGACCGGGCCAATCCTCGACTTACGCATTATGCCTCTCCGACCAGCTCAGCA
* *
14364814 CCCGCACG-CTCGTTTCG-TGGGTGGCTTAG
129 CCCGCACGCCT-ATTTCGATGGTTGGCTTAG
14364843 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
14364870 CATACGGAGT
Statistics
Matches: 270, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 93 0.34
159 166 0.61
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCACTAGCAGGATCGACA
GCACGCAGGAGGGACCGGGCCAATCCTCGACTTACGCATTATGCCTCTCCGACCAGCTCAGCACC
CGCACGCCTATTTCGATGGTTGGCTTAG
Found at i:14364879 original size:26 final size:26
Alignment explanation
Indices: 14364843--14364895 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14364833 GGTGGCTTAG
14364843 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14364869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14364895 G
1 G
14364896 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14365762 original size:26 final size:26
Alignment explanation
Indices: 14365725--14365777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14365715 GTTGACTTAG
14365725 GCATATGAAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
*
14365751 GCATAT-AGAGTTCATTCCCAGTCTAA
1 GCATATGA-AGTTCATTCCCAATCTAA
14365777 G
1 G
14365778 AGTGGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAATCTAA
Found at i:14366097 original size:26 final size:26
Alignment explanation
Indices: 14366067--14366119 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14366057 GTTAGCTTAG
14366067 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
14366093 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
14366119 G
1 G
14366120 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:14366293 original size:26 final size:26
Alignment explanation
Indices: 14366264--14366316 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14366254 GTTGACTTAG
14366264 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
14366290 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14366316 G
1 G
14366317 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14366522 original size:184 final size:184
Alignment explanation
Indices: 14366249--14366646 Score: 523
Period size: 184 Copynumber: 2.2 Consensus size: 184
14366239 ACGCTCGTTC
* *
14366249 CATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
1 CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCT
* * *
14366314 AAGATCGAACCGAACCGAGGGTTGTGGCAGTAGGATCGATAGCACGCAAAGGGGACAGGGCCT-A
66 AAGATCGAACCGAACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAAAGGGGACAGGG-CTGA
* * * *
14366378 TCC-CTGGCTTATGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCAAGCCCATTT
130 TCCTC-AGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCTACAAGCCCATTT
** * *
14366433 TGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGGATATGGAGTTCATTCCCAATCT
1 CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCT
* * * ** *
14366498 AAGATCGAACC-AGACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGGAGGGGGGACTGGGCTGA
66 AAGATCGAACCGA-ACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAAAGGGGACAGGGCTGA
* * * *
14366562 TCCTCAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACCTACACGCCCATTT
130 TCCTCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCTACAAGCCCATTT
* *
14366617 CATGGGTTGCCTTAGGCATAGGGAGTTCAT
1 CATGGGTTGACTTAGGCATACGGAGTTCAT
14366647 TCCATGTCTA
Statistics
Matches: 183, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 3 0.02
184 179 0.98
185 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCT
AAGATCGAACCGAACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAAAGGGGACAGGGCTGAT
CCTCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCTACAAGCCCATTT
Found at i:14366780 original size:160 final size:156
Alignment explanation
Indices: 14366560--14366971 Score: 352
Period size: 160 Copynumber: 2.6 Consensus size: 156
14366550 GGACTGGGCT
* * * * ** * * * *
14366560 GATCCTCAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACCTA-CACGCCCATTTCATGGGT
1 GATCCCCAGCTTACGCATTATGCCTCTCCGATCGACTCAGCGCC-AGCACGCTCGTTTCATGGGT
* * * *
14366624 TGCCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-TCGGACCGACGGTTATGATAGC
65 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGA--CCAGATCGGACAGA-GGTTACGATAGC
* **
14366687 AGGACCGGCAGCACGCAGAGGGGGATC-GAGTCC
127 AGGACCGACAGCACGCAGA-CAGG-TCTG-GT-C
* * *
14366720 GATCCCCTA-CTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCAGCACGCTCGTTTCATGAGT
1 GATCCCC-AGCTTACGCATTATGCCTCTCCGATCGACTCAGCGCCAGCACGCTCGTTTCATGGGT
* * * * *
14366784 TGACTTAGGCATACGAATTTCATTCCCA-GTCTAAGATCAGATCGGACAGAGGTTACGGTAGTAG
65 TGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATCGGACAGAGGTTACGATAGCAG
** *
14366848 GATTGACAGCACGTAGACAGGTCTGGTC
129 GACCGACAGCACGCAGACAGGTCTGGTC
* * * * * * * *
14366876 GGTCCCCAGCTTACGCATTCTGCCTCTTCGGTCGACTCAGTGCCCGTACGCTCGTTTCACGGGTT
1 GATCCCCAGCTTACGCATTATGCCTCTCCGATCGACTCAGCGCCAGCACGCTCGTTTCATGGGTT
*
14366941 GGCTTAGGCATACGGAGTTCATT-CATGTCTA
66 GACTTAGGCATACGGAGTTCATTCCATGTCTA
14366972 GGCATACGGA
Statistics
Matches: 204, Mismatches: 40, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
154 2 0.01
155 6 0.03
156 73 0.36
157 4 0.02
158 3 0.01
159 28 0.14
160 83 0.41
161 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.25
Consensus pattern (156 bp):
GATCCCCAGCTTACGCATTATGCCTCTCCGATCGACTCAGCGCCAGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGACAGAGGTTACGATAGCAGGA
CCGACAGCACGCAGACAGGTCTGGTC
Found at i:14367183 original size:511 final size:495
Alignment explanation
Indices: 14366524--14367603 Score: 1279
Period size: 511 Copynumber: 2.1 Consensus size: 495
14366514 GAGGGTTGTG
* * * * *
14366524 GCAGCAAGATCGGCAGCACGGAGGGGGGACTGGGCTGATCCTCAGCTTGCGCATTCTGCCTCTCT
1 GCAGCAGGATCGGCAGCACGTAGGGGGGAC-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC
* * * *
14366589 GGCCGACTGAGCACCTACACGCCCATTTCATGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGT
65 GGTCGGCTGAGCACCTACACGCCCATTTCATGGGTTGCCTTAGGCATACGAAGTTCATTCCATGT
** * * * * * * *
14366654 CTAAACCCCAGTCGGACCGACGGTTATGATAGCAGGACCGGCAGCACGCAGAGGGGGATCGAGTC
130 CTAAACCCCAACCGGACCGAAGGTTATGACAGCAGGACCGACAGCACACAAAGAGGGACCGAG-C
* * * *
14366719 CGATCCCCT-ACTTGCGCATTATGCCTCTCCGA-TCGGCTCAGCGCCAGCACGCTCGTTTCATGA
194 CGAT-CCCTGACTTACGCATTATGCCTCTCCGACT-GGCTCAGCACCAGAACGCTCGTTTCACGA
* * *
14366782 GTTGACTTAGGCATACGAATTTCATTCCCAGTCTAAGATCAGATCGGACAG-AGGTTACGGTAGT
257 GTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACAGAAGGTTACAGTAGT
* * *
14366846 AGGATTGACAGCACGTAGACAGGTCTGGTCGGTCCCCAGCTTACGCATTCTGCCTCT-TCGGTCG
322 AGGATCGACAGCAC----ACAGG---GG--GG------G-ATACGCATTCTGCCTCTCT-GGACG
* *
14366910 ACTCAGTGCCCGTACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTTCATT-CATGTCTAGG
370 ACTCAGCGCCCGTACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
14366974 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGACCA
435 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGACCA
* * *
14367035 GTAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGGCAGCACGTAGGGGGGA-CGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC
* * * * * *
14367100 GGTCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
65 GGTCGGCTGAGCACCTACACGCCCATTTCATGGGTTGCCTTAGGCATACGAAGTTCATTCCATGT
* * * * *
14367165 CTAAGCCCCAACCGGACCGAAGGTTGTGGCAGCGGGACCGATAGCACACAAAGAGGGACCGAGCC
130 CTAAACCCCAACCGGACCGAAGGTTATGACAGCAGGACCGACAGCACACAAAGAGGGACCGAGCC
* * * *
14367230 GATCCCTGGCTTACGCATTATGCCTCTCCGACTGGCTCAGCACCCGAACGTTCGTTTCACGGGTT
195 GATCCCTGACTTACGCATTATGCCTCTCCGACTGGCTCAGCACCAGAACGCTCGTTTCACGAGTT
* * * *
14367295 GACTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAAGGTTGCAGTAGTAGG
260 GACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACAGAAGGTTACAGTAGTAGG
* * * * *
14367360 ATCGACAGCACACAGGGGGGGATCCGCATTTTGCCTCTCTGGACGGCTGAGCGCCCGTACGCTTG
325 ATCGACAGCACACAGGGGGGGATACGCATTCTGCCTCTCTGGACGACTCAGCGCCCGTACGCTCG
** *
14367425 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAG
390 TTTCACGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAG
* * **
14367490 TCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGACCA
455 TCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGACCA
* * *
14367531 GCAGCAGGATCGGTAGCACGCTGGGGGGGACCGGGCCGATCCTCGGCTTGCGTATTCTGCCTCTC
1 GCAGCAGGATCGGCAGCACG-TAGGGGGGA-CGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTC
*
14367596 CAGTCGGC
64 CGGTCGGC
14367604 CTTTTCGGTC
Statistics
Matches: 487, Mismatches: 75, Indels: 28
0.83 0.13 0.05
Matches are distributed among these distances:
495 66 0.14
496 82 0.17
497 46 0.09
502 2 0.00
504 2 0.00
507 5 0.01
509 4 0.01
510 95 0.20
511 184 0.38
512 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (495 bp):
GCAGCAGGATCGGCAGCACGTAGGGGGGACGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
GTCGGCTGAGCACCTACACGCCCATTTCATGGGTTGCCTTAGGCATACGAAGTTCATTCCATGTC
TAAACCCCAACCGGACCGAAGGTTATGACAGCAGGACCGACAGCACACAAAGAGGGACCGAGCCG
ATCCCTGACTTACGCATTATGCCTCTCCGACTGGCTCAGCACCAGAACGCTCGTTTCACGAGTTG
ACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACAGAAGGTTACAGTAGTAGGA
TCGACAGCACACAGGGGGGGATACGCATTCTGCCTCTCTGGACGACTCAGCGCCCGTACGCTCGT
TTCACGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
CTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGACCA
Found at i:14367472 original size:26 final size:26
Alignment explanation
Indices: 14367443--14367495 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14367433 GTTGGCTTAG
*
14367443 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14367469 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14367495 G
1 G
14367496 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14368039 original size:158 final size:154
Alignment explanation
Indices: 14367679--14368061 Score: 351
Period size: 159 Copynumber: 2.4 Consensus size: 154
14367669 CCCAGTCTAA
* * * *
14367679 GCATACGGAGTTCATTCCCAGTCAAAGATC-GAACCGGA-TCGAGGGTTGCGACAGCAGGATCGA
1 GCATAC-GAGTTCA-TCCCAGTCTAAGATCAG-ACC-GACT-GAGGGTTGTGACAGCAGGACCGG
* * *
14367742 CAGCACGCAGGGGGGATCGGGCCGATCCCGACTTGCACATTCTGCCTCTCCGGCCTGCTGAGCGC
61 CAGCACGCAGGGGGGATCGGGCCGATCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCGC
* * ** * *
14367807 CCGCACGTCTGTTTTGTCGATTGGCTTAG
126 CCGAACGTCTATTTCATCGATCGACTTAG
* * * ** * * *
14367836 GCATAGGGAGTTCATTCCATGCCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATA-CGAGTTCATCCCA-GTCTAAG-ATCAGACCG-ACTGAGGGTTGTGACAGCAGGACCGGC
* * *
14367900 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
62 AGCACGCAG-GGGGGATCGGGCCGAT-CCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCG
* * *
14367965 CTCGAACG-CTCATTTCATGGGTCGACTTAG
125 CCCGAACGTCT-ATTTCATCGATCGACTTAG
* *
14367995 GCATACGAGTTCACTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGACAGCAGGACCAGCAG
1 GCATACGAGTTCA-TCCCAGTCTAAGATCAGACC-GACTGAGGGTTGTGACAGCAGGACCGGCAG
14368060 CA
64 CA
14368062 GGATTGGCAG
Statistics
Matches: 177, Mismatches: 37, Indels: 23
0.75 0.16 0.10
Matches are distributed among these distances:
156 5 0.03
157 51 0.29
158 60 0.34
159 61 0.34
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (154 bp):
GCATACGAGTTCATCCCAGTCTAAGATCAGACCGACTGAGGGTTGTGACAGCAGGACCGGCAGCA
CGCAGGGGGGATCGGGCCGATCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCGAA
CGTCTATTTCATCGATCGACTTAG
Found at i:14368215 original size:26 final size:26
Alignment explanation
Indices: 14368178--14368234 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
14368168 GTTGATTTAG
*
14368178 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCAGT-CCCAGTCTAA
14368204 GCATACGAAGTTCAGTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
14368230 G-ATAC
1 GCATAC
14368235 AACCGGACCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 4 0.14
26 24 0.83
27 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:14369625 original size:159 final size:159
Alignment explanation
Indices: 14369234--14369626 Score: 375
Period size: 159 Copynumber: 2.5 Consensus size: 159
14369224 AAGCATATGA
* * * * * *
14369234 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAATAGGATCGATAGTACGCAA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAA
* * * * * *
14369299 AG-GGGATCGGGTAGATCCCCAGCATGCGCATTCTGCCACATCGGTCAGCTGACCGCCCGCACGC
66 AGAGGGACCAGGCAGATCCCCAGCATGCGCATTATGCCACATCGGTCAGCTCACCGCCCGAACGC
* *
14369363 CCATTTCACGGGTTGGCTTAGGCATAGGG
131 CCATTTCACGGGTTGACTTAGGCATACGG
** * * * * *
14369392 AGTTCATT-CCATGTCTAAGCA-CTAG-TTGGACTGAGGGTTGTGGCAGTAAGACCGACAACACG
1 AGTTCATTCCCA-GTCTAAG-ATC-AGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACG
** * * * * *
14369454 TAAAGAAAGACCAGGCCGATCCCC-GACTTGTGCATTATGCTAC-TACGGTCAGCTCAGCGCCCG
63 TAAAGAGGGACCAGGCAGATCCCCAG-CATGCGCATTATGCCACAT-CGGTCAGCTCACCGCCCG
* ** *
14369517 AACGCTCATTTCGTGGGTTGACTTAGGCATCCGG
126 AACGCCCATTTCACGGGTTGACTTAGGCATACGG
* * *
14369551 AGTTCATTCCCAGTCTATGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAA
*
14369616 GGAGGGACCAG
66 AGAGGGACCAG
14369627 ACCGGTCCTC
Statistics
Matches: 181, Mismatches: 45, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.02
158 50 0.28
159 125 0.69
160 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (159 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAA
AGAGGGACCAGGCAGATCCCCAGCATGCGCATTATGCCACATCGGTCAGCTCACCGCCCGAACGC
CCATTTCACGGGTTGACTTAGGCATACGG
Found at i:14369738 original size:26 final size:26
Alignment explanation
Indices: 14369702--14369780 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
14369692 GTTGGCTTAG
*
14369702 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14369728 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14369754 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14369780 G
1 G
14369781 ATCGGATCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14370302 original size:26 final size:26
Alignment explanation
Indices: 14370265--14370317 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14370255 GTTAGCTTTG
*
14370265 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14370291 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14370317 G
1 G
14370318 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14371657 original size:26 final size:26
Alignment explanation
Indices: 14371627--14371676 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14371617 GTTGACTTAG
14371627 GCATACAGAGTTCA-TCCTCAGTCTGA
1 GCATACAGAGTTCATTCC-CAGTCTGA
*
14371653 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
14371677 AAGATCAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:14372122 original size:158 final size:158
Alignment explanation
Indices: 14371653--14372153 Score: 571
Period size: 158 Copynumber: 3.2 Consensus size: 158
14371643 CTCAGTCTGA
* * *
14371653 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATC-GACCGAGGGTTGCGGTACCAGGATAGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATAGAC
* * * *
14371716 AGCACGTAGGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGC
65 AGCACGCAAGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * ** *
14371781 CCGCACGCCCATTTCACGTTTTGGCTTAT
130 CCGCACGCTCGTTTCATGCATTGGCTTAG
* ** * * **
14371810 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATAGAC
* * ** * *
14371874 AGCACGCAGAGGGGGACCG-GACTGATCCCTGACTGGCGCATTATGCCTCTCCGACCGGCTCAGC
65 AGCACGCA-AGGGGGACCGAG-CTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
*
14371938 ACCCGCACGCTCGTTTCATGCATTGGCTTAG
128 GCCCGCACGCTCGTTTCATGCATTGGCTTAG
* * * * * *
14371969 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATAGAC
* * *
14372033 AACACGCAAGGGGGACCGAGCCGGTCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGCAAGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
* **
14372098 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGCATTGGCTTAG
14372127 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14372154 CATACGCAGT
Statistics
Matches: 283, Mismatches: 52, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
156 3 0.01
157 27 0.10
158 128 0.45
159 122 0.43
160 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATAGACA
GCACGCAAGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGCATTGGCTTAG
Found at i:14372177 original size:26 final size:26
Alignment explanation
Indices: 14372127--14372179 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14372117 GTTGGCTTAG
* *
14372127 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGCAGTTCATTCCATATCTAA
14372153 GCATACGCAGTTCATTCCCA-ATCTAA
1 GCATACGCAGTTCATT-CCATATCTAA
14372179 G
1 G
14372180 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCATATCTAA
Found at i:14372507 original size:171 final size:170
Alignment explanation
Indices: 14372186--14372508 Score: 416
Period size: 171 Copynumber: 1.9 Consensus size: 170
14372176 TAAGATCGGA
* * **
14372186 CCGGACCGAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGATAGCACGTAGGGGGGACCGGGTC
1 CCGGACCGAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGACTC
* ** * * * *
14372251 GATCCTCGGCTTGTGCATTCTGCCTCTCTGATCGGTTGAGCGCCCGTACGCTCGTTCCATGGGTT
66 GATCCCCGGCTTGCACATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTCCATGGGTT
14372316 GGCTTAGGCATACGGAGTTCATTCCTTATCTAAGCCCCAG
131 GGCTTAGGCATACGGAGTTCATTCCTTATCTAAGCCCCAG
* * ** *
14372356 CCGGACCTAGGGTTGTGGCAGTCA-GACCTGCAGTGGGATCGACAGCACGCAGAGGGGGATCGAA
1 CCGGACCGAGGGTTGTGGCAGT-AGGACCAGCAGCAGGATCGACAGCACGCAG-GGGGGACCG-A
* * * * *
14372420 CT-GATCCCCGGCTTGCACATTATGCGTCTCCGACCGTTTGGGCGCTCGCACGCTCGTTTCATGG
63 CTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTCCATGG
14372484 GTTGGCTTAGGCATACGGAGTTCAT
128 GTTGGCTTAGGCATACGGAGTTCAT
14372509 CCCCAGTCTA
Statistics
Matches: 129, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
170 44 0.34
171 84 0.65
172 1 0.01
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (170 bp):
CCGGACCGAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGACTC
GATCCCCGGCTTGCACATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTCCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCTTATCTAAGCCCCAG
Found at i:14372521 original size:171 final size:170
Alignment explanation
Indices: 14372153--14372521 Score: 413
Period size: 171 Copynumber: 2.2 Consensus size: 170
14372143 CCATGTCTAA
* * ** *
14372153 GCATACGCAGTTCATTCCCAATCTAAG-ATCGGACCGGACCGAGGGTTGTGGCAGTAGGACCAGC
1 GCATACGGAGTTCATTCCCCATCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTAGGACCAGC
* * ** * ** * *
14372217 AGCAGGATCGATAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTGA
65 AGCAGGATCGACAGCACGCAGGGGGGACCGACTCGATCCCCGGCTTGCACATTATGCCTCTCCGA
* *
14372282 TCGGTTGAGCGCCCGTACGCTCGTTCCATGGGTTGGCTTAG
130 CCGGTTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAG
** * *
14372323 GCATACGGAGTTCATTCCTTATCTAAGCCCCAGCCGGACCTAGGGTTGTGGCAGTCA-GACCTGC
1 GCATACGGAGTTCATTCCCCATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGT-AGGACCAGC
** * *
14372387 AGTGGGATCGACAGCACGCAGAGGGGGATCGAACT-GATCCCCGGCTTGCACATTATGCGTCTCC
65 AGCAGGATCGACAGCACGCAG-GGGGGACCG-ACTCGATCCCCGGCTTGCACATTATGCCTCTCC
* * * *
14372451 GACCGTTTGGGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAG
128 GACCGGTTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAG
14372494 GCATACGGAGTTCA-TCCCCAGTCTAAGC
1 GCATACGGAGTTCATTCCCCA-TCTAAGC
14372522 ATACGGAGTT
Statistics
Matches: 165, Mismatches: 29, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
170 72 0.44
171 92 0.56
172 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCCCATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCAGCA
GCAGGATCGACAGCACGCAGGGGGGACCGACTCGATCCCCGGCTTGCACATTATGCCTCTCCGAC
CGGTTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAG
Found at i:14372524 original size:26 final size:26
Alignment explanation
Indices: 14372494--14372546 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14372484 GTTGGCTTAG
14372494 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14372520 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14372546 G
1 G
14372547 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14372844 original size:159 final size:158
Alignment explanation
Indices: 14372656--14373019 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 158
14372646 CACACGCCTA
* * * *
14372656 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCGAGTGTT
1 TTTCATGGGTT-GCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCGAACCAGACCGAGGGTT
* * * *
14372721 GTGGTAACGGGATCAACAGCATAC-AGAGGGGGACCGGGCCGATCTTC-GGCTTACGCATTATGC
65 GCGGTAACAGGATCAACAGCACACAAGA-GGGGACCGGGCCGATC-CCAGGCTTACGCATTATGC
* *
14372784 CTCTCCGACT-GGCTCAGCACTCGAATGCTCG
128 CTCTCCG-CTCAGCTCAGCACCCGAATGCTCG
* ** * *
14372815 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTAGACCGAGGGT
1 TTTCATGGGTTG-CTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCGAACCAGACCGAGGGT
* * * * * * *
14372879 TGCGGTAGCAGGATCGACAGCACGCAAGAGGGGATCGGGTCGATCCCAGGCTTACGCGTTCTGCC
64 TGCGGTAACAGGATCAACAGCACACAAGAGGGGACCGGGCCGATCCCAGGCTTACGCATTATGCC
* * * *
14372944 TCTCCGGTCAGCTGAGCGCCCGCATGCTCG
129 TCTCCGCTCAGCTCAGCACCCGAATGCTCG
*
14372974 TTTCGTGGGTTCGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTT-GCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
14373020 ATACGGAGTT
Statistics
Matches: 170, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
158 6 0.04
159 157 0.92
160 7 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
TTTCATGGGTTGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCGAACCAGACCGAGGGTTG
CGGTAACAGGATCAACAGCACACAAGAGGGGACCGGGCCGATCCCAGGCTTACGCATTATGCCTC
TCCGCTCAGCTCAGCACCCGAATGCTCG
Found at i:14373021 original size:26 final size:26
Alignment explanation
Indices: 14372992--14373044 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14372982 GTTCGCTTAG
14372992 GCATAAGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTTCATTCCTA-GTCTAA
*
14373018 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
14373044 G
1 G
14373045 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:14373230 original size:26 final size:26
Alignment explanation
Indices: 14373200--14373252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14373190 GTTGACTTAG
14373200 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14373226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14373252 G
1 G
14373253 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14374133 original size:26 final size:26
Alignment explanation
Indices: 14374104--14374156 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14374094 ATTGGCTTAG
14374104 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14374130 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14374156 G
1 G
14374157 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14374510 original size:159 final size:159
Alignment explanation
Indices: 14374212--14374651 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 159
14374202 CAGGATCGGT
* * *
14374212 AGCACGCAGGAAGGGACCTA-GCCGATCCCCGGCTTGTGCATTCTGCCTCTCCTG-TCGGCTGAG
1 AGCACGCAGG-GGGGACC-AGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC-GACCAGCTGAG
* * * *
14374275 CTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA
63 CGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCCCCA
* * *
14374339 GCCGGACCGAGGGTTATGGCAATGGGACCGGC
128 GCCGGACCGAGGGTTACGACAATGGGACCGAC
* * ** * *
14374371 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTCAGCG
1 AGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAGCG
* * * ** *
14374436 CCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAG-ATCGGA
65 CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCCCCAG-
* * * * * *
14374499 CTGGACTGAGGGTTGCGACAGTTGGATCGAC
129 CCGGACCGAGGGTTACGACAATGGGACCGAC
* * * *
14374530 AGCACGCAGGGGGGACCAGGTC-AGTCCCTGGCTTGTGCATTCTGCCTCTCCAACCAGCTGAGTG
1 AGCACGCAGGGGGGACCAGGCCGA-TCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAGCG
* * * * *
14374594 CCCGTACGCTCGTTTCATAGGTTGGCTTACGCATACGGAGTTCATT-CCATGTCTAAGC
65 CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGC
14374652 ATACGGAGTT
Statistics
Matches: 227, Mismatches: 46, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 91 0.40
159 128 0.56
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAGCGC
CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCCCCAGCC
GGACCGAGGGTTACGACAATGGGACCGAC
Found at i:14374654 original size:26 final size:26
Alignment explanation
Indices: 14374624--14374676 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14374614 GTTGGCTTAC
14374624 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14374650 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14374676 G
1 G
14374677 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14375205 original size:26 final size:26
Alignment explanation
Indices: 14375176--14375228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14375166 GTTGGCTTAG
14375176 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATATGAAGTTCATTCCCA-GTCTAA
*
14375202 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
14375228 G
1 G
14375229 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:14375319 original size:11 final size:11
Alignment explanation
Indices: 14375305--14375329 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14375295 ACCATCGCTA
14375305 GAGCATCGTCG
1 GAGCATCGTCG
14375316 GAGCATCGTCG
1 GAGCATCGTCG
14375327 GAG
1 GAG
14375330 AGCCTAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:14376233 original size:159 final size:158
Alignment explanation
Indices: 14375939--14376446 Score: 495
Period size: 159 Copynumber: 3.1 Consensus size: 158
14375929 GTCTAAGCAA
* * * * **
14375939 ACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGA-TCGAGGGTTACGATAGCAGGATCGGTAGC
1 ACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACT-GAGGGTTGCAACAGCAGGATCGACAGC
* * * * * ** * * *
14376002 ACGCAAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCTG
64 ATGCAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
* *
14376067 CATGCTCATTTTGTGGGTTGACTTAGGCAT
129 CACGCTCATTTCGTGGGTTGACTTAGGCAT
*
14376097 ACCGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCAACAGCAGGATCGACAGCAT
1 ACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCAACAGCAGGATCGACAGCAT
* * * * **
14376162 GTAGGTGGGGACCAGGCCGGTCCCTGTCTTGCGCATTCTGCCTCTTTGACCGGCTGAGCACCCGC
66 GCAGG-GGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGC
* *
14376227 ACGCTCATTTCGTGGGTTGGCTTTGGCAT
130 ACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * *
14376256 ACGGAGTTCATTCCCAGTCTAAGATTGGA-TCAGACCGAGGGTTACGGTAGCAGGACCAGCGGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACTGAGGG-T----T-GCA--A-CA---GCA
* *
14376320 AGATCGACAGCATGCAGGGGGGA-CGGGCCGATCCCTGACTTGCGCA-TCTGCCTCTCCGACCGA
53 GGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGG
* * * *
14376383 CTGAGCACCCACACGCTCGTTCCGGGGGTTGACTTAGGCAT
118 CTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
*
14376424 ACGGAGTTCATCCCCAGTCTAAG
1 ACGGAGTTCATTCCCAGTCTAAG
14376447 CATACGGAGA
Statistics
Matches: 288, Mismatches: 46, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
157 3 0.01
158 55 0.19
159 107 0.37
160 1 0.00
164 1 0.00
165 3 0.01
167 1 0.00
168 73 0.25
169 20 0.07
170 5 0.02
171 19 0.07
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCAACAGCAGGATCGACAGCAT
GCAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
CGCTCATTTCGTGGGTTGACTTAGGCAT
Found at i:14376449 original size:26 final size:26
Alignment explanation
Indices: 14376420--14376470 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14376410 GTTGACTTAG
*
14376420 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* *
14376446 GCATACGGAGATCATTCCTAGTCTA
1 GCATACGGAGATCATCCCCAGTCTA
14376471 GGATCAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:14376798 original size:26 final size:25
Alignment explanation
Indices: 14376762--14376813 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14376752 GTTGGCTTAG
14376762 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
14376788 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
14376813 G
1 G
14376814 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:14377521 original size:26 final size:26
Alignment explanation
Indices: 14377481--14377531 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14377471 GTTGACTTAG
*
14377481 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* *
14377507 GCATACGGAGATCATTCCTAGTCTA
1 GCATACGGAGATCATCCCCAGTCTA
14377532 GGATCAGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:14377859 original size:26 final size:25
Alignment explanation
Indices: 14377823--14377874 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
14377813 GTTGGCTTAG
14377823 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
14377849 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
14377874 G
1 G
14377875 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:14378580 original size:26 final size:26
Alignment explanation
Indices: 14378544--14378596 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14378534 GTTGACTTAG
*
14378544 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGGAGTTCAAT-CCCAATCTAA
14378570 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
14378596 G
1 G
14378597 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:14379049 original size:26 final size:26
Alignment explanation
Indices: 14379013--14379065 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14379003 GTTGGCTTAG
14379013 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14379039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14379065 G
1 G
14379066 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14379531 original size:158 final size:154
Alignment explanation
Indices: 14379270--14379881 Score: 454
Period size: 158 Copynumber: 3.9 Consensus size: 154
14379260 CAGCAGGACT
* * * * * * * ** *
14379270 GGCAGCGGGATCGACAGAATGCAGAGGGGTACCGGGCTGATCCTCGGCTTACGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGTAG-GGGGGATCGGGCCGATCC-CGGCTTGTGCATTCTGCCTCT
* * * ** ** * *
14379335 CCGACTGGCTGAGTGCCCGCACATTTGTTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCCCA
64 CCGTC-GGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCA
14379400 GTCTAAGATCAGACCAGACCGAGGGTTGC
127 GTCTAAGATCAGA-CAGACCGAGGGTTGC
* * *
14379429 AGCAACAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTC
1 GGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCC-CGGCTTGTGCATTCTGCCTCTC
* * * * * * * * *
14379494 CAGTCGACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATG
65 C-GTCGGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-G
** * * *
14379559 TCTAAGCCCCAGTCGGACCGAGGGTTGT
128 TCTAAG-ATCAGACAGACCGAGGGTTGC
* * * * *** * * * * *
14379587 GGTAGCGGGACCGGCAGCACGTAGAGAACGATCGAGCTGATCCCCGGCTTGAGCATTATGCCACT
1 GGCAGCAGGATCGACAGCACGTAG-GGGGGATCGGGCCGAT-CCCGGCTTGTGCATTCTGCCTCT
* * * * *
14379652 TCGATCGGCTCAGTGCCCGAACACTCATTTCGTGCGTT-ACCTTAGGCATACGGAGTTCATTCCC
64 CCG-TCGGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGA-CTTAGGCATACGGAGTTCA-TCCC
** * *
14379716 AGTCTAAGATTGGATAGGACCGAAGGTTGC
126 AGTCTAAGATCAGACA-GACCGAGGGTTGC
* * *
14379746 GGCAGTAGGATCGACAGCACGTAGGGGGGATTGGGCCGATCCCTGGCTTGTGCATTCTGTCTCTC
1 GGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCC-GGCTTGTGCATTCTGCCTCTC
* * * * *
14379811 CGGCTGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTCG-CTTAGGCATATGGAGTTCATTCCAT
65 CGTC-GGCTGAGCGCCCGAACGCTCATTTCGTGGGTT-GACTTAGGCATACGGAGTTCATCCCA-
14379875 GTCTAAG
127 GTCTAAG
14379882 CATACAGAGT
Statistics
Matches: 343, Mismatches: 96, Indels: 29
0.73 0.21 0.06
Matches are distributed among these distances:
157 11 0.03
158 195 0.57
159 131 0.38
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
GGCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCGGCTTGTGCATTCTGCCTCTCC
GTCGGCTGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCT
AAGATCAGACAGACCGAGGGTTGC
Found at i:14379770 original size:317 final size:320
Alignment explanation
Indices: 14379136--14379888 Score: 873
Period size: 317 Copynumber: 2.3 Consensus size: 320
14379126 GGGACCGAAA
* * *
14379136 CGATCCCCGGTTTGTGCATTCTGCCTCTCCGGTC-AGCTGACCACCCGCACGCTCGTTTCATGGG
1 CGAT-CCCGGCTTGTGCATTCTGCCTCTCC-GTCGA-CTGAGCGCCCGCACGCTCGTTTCATGGG
14379200 TTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGCA
63 TTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGCA
* * *
14379265 GGACTGGCAGCGGGATCGACAGAATGCAGAGGGGTACCGGGCTGATCCTCGGCTTACGCATTATG
128 GGACCGGCAGC--GATCGACAGAA-GCAGA---GTA-CGAGCTGATCCCCGGCTTACGCATTATG
* * * * ** *
14379330 CCTCTCCGACTGGCTGAGTGCCCGCACATTTGTTTTGTAGGTTGACTTAGGCATACGGAGTTCAT
186 CCACTCCGACTGGCTCAGTGCCCGAACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCAT
*
14379395 CCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGGAT
251 CCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGGAT
14379460 CGGGC
316 CGGGC
* * *
14379465 CGATCCTCGGCTTGTGCATTCTACCTCTCCAGTCGACTGAGCGCCCGTACGCCCGTTTCATGGGT
1 CGATCC-CGGCTTGTGCATTCTGCCTCTCC-GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* * ** * *
14379530 TGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGG
64 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGCAG
* *
14379595 GACCGGCAGC-A-CGTAGAGAA-C-GA-T-CGAGCTGATCCCCGGCTTGA-GCATTATGCCACTT
129 GACCGGCAGCGATCG-ACAGAAGCAGAGTACGAGCTGATCCCCGGCTT-ACGCATTATGCCACTC
*
14379653 CGA-TCGGCTCAGTGCCCGAACACTCATTTCGT-GCGTT-ACCTTAGGCATACGGAGTTCATTCC
192 CGACT-GGCTCAGTGCCCGAACACTCATTTCGTAG-GTTGA-CTTAGGCATACGGAGTTCATCCC
** * * ** *
14379715 CAGTCTAAGATTGGA-TAGGACCGAAGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGGATTG
254 CAGTCTAAGATCAGACCA-GACCGAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGGATCG
14379779 GGC
318 GGC
* * * * **
14379782 CGATCCCTGGCTTGTGCATTCTGTCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
1 CGATCCC-GGCTTGTGCATTCTGCCTCTCCGTC-GACTGAGCGCCCGCACGCTCGTTTCATGGGT
*
14379847 TCGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAG
64 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA-ACAG
14379889 AGTTCATTCC
Statistics
Matches: 365, Mismatches: 48, Indels: 33
0.82 0.11 0.07
Matches are distributed among these distances:
316 7 0.02
317 218 0.60
318 4 0.01
319 1 0.00
323 2 0.01
324 1 0.00
325 2 0.01
326 6 0.02
328 2 0.01
329 121 0.33
330 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (320 bp):
CGATCCCGGCTTGTGCATTCTGCCTCTCCGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTG
GCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGCAGGA
CCGGCAGCGATCGACAGAAGCAGAGTACGAGCTGATCCCCGGCTTACGCATTATGCCACTCCGAC
TGGCTCAGTGCCCGAACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGATCAGACCAGACCGAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGGATCGGGC
Found at i:14380304 original size:26 final size:26
Alignment explanation
Indices: 14380255--14380306 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14380245 TTGGCTTAGA
*
14380255 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
*
14380281 CATATGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
14380307 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:14380307 original size:399 final size:399
Alignment explanation
Indices: 14379563--14380347 Score: 1016
Period size: 399 Copynumber: 2.0 Consensus size: 399
14379553 TCCATGTCTA
* * * * *
14379563 AGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACGTAGAGAACGATCGAGCTGAT
1 AGCCCCAGTCAGACCGAGGGTTGTGGTAACGGGACCGACAGCACGTAGAGAACGACCGAGCCGAT
* * * *
14379628 CCCCGGCTTGAGCATTATGCCACTTCGATCGGCTCAGTGCCCGAACACTCATTTCGTGCGTTACC
66 CCCCGACTTGAGCATTACGCCACTCCGACCGGCTCAGTGCCCGAACACTCATTTCGTGCGTTACC
* ** * * **
14379693 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATAGGACCGAAGGTTGCGGCAGTAGGATC
131 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACAGAACCGAAGGTTGCGGCAACAGGATC
* ** ** * * * *
14379758 GACAGCACGTAGGGGGGATTGGGCCGATCCCTGGCTTGTGCATTCTGTCTCTCCGGCTGGCTGAG
196 GACAGCACGCAGGGGGGATCAGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAG
* * * *
14379823 CGCCCGCACGCTCATTTTGTGGGTTCGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACA
261 CGCCCGCACACTCATTTCGTGGGTTCGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACA
* * * * * *
14379888 GAGTTCATTCCCAGTCTAAGAGCAAACTGGACCGAGGGTTGTGGTAGCAAGACTAGCAGCACGCA
326 GAGTTCATTCCCAATCTAAGAGCAAACCGGACCGAAGGTTGCGATAGCAAGACCAGCAGCACGCA
14379953 GGGGGATCT
391 GGGGGATCT
* * *
14379962 AGCCCCAGTCAGACCGAGGGTTGTGGTAACGGGACCGACAGCATGTAGAGGACGACCGGGCCGAT
1 AGCCCCAGTCAGACCGAGGGTTGTGGTAACGGGACCGACAGCACGTAGAGAACGACCGAGCCGAT
** * *
14380027 CCTTGACTTGAGCATTACGCCACTCCGACCGGCTCAGTGCCTGAACACTCGTTTCGTGCGTTGA-
66 CCCCGACTTGAGCATTACGCCACTCCGACCGGCTCAGTGCCCGAACACTCATTTCGTGCGTT-AC
* * * *
14380091 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGTGGCAACAGGAT
130 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACAGAACCGAAGGTTGCGGCAACAGGAT
* ** * *
14380156 CGATAGTGCGCAGGGGGGATCAGGTCGGTCTCC-GGCTTACGCATTCTGCCTCTCCGACCGACTG
195 CGACAGCACGCAGGGGGGATCAGGCCGATC-CCTGGCTTACGCATTCTGCCTCTCCGACCGACTG
* * *
14380220 AGCGCCTGCACACTCGTTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATA
259 AGCGCCCGCACACTCATTTCGTGGGTTCGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATA
** * *
14380285 TGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAAGGTTGCGATAGCAGGACCAGCAGCA
324 CAGAGTTCATTCCCAATCTAAGAGCAAACCGGACCGAAGGTTGCGATAGCAAGACCAGCAGCA
14380348 GGATCGGTAG
Statistics
Matches: 326, Mismatches: 58, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
399 323 0.99
400 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.22
Consensus pattern (399 bp):
AGCCCCAGTCAGACCGAGGGTTGTGGTAACGGGACCGACAGCACGTAGAGAACGACCGAGCCGAT
CCCCGACTTGAGCATTACGCCACTCCGACCGGCTCAGTGCCCGAACACTCATTTCGTGCGTTACC
TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACAGAACCGAAGGTTGCGGCAACAGGATC
GACAGCACGCAGGGGGGATCAGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAG
CGCCCGCACACTCATTTCGTGGGTTCGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACA
GAGTTCATTCCCAATCTAAGAGCAAACCGGACCGAAGGTTGCGATAGCAAGACCAGCAGCACGCA
GGGGGATCT
Found at i:14380606 original size:171 final size:173
Alignment explanation
Indices: 14380420--14380854 Score: 430
Period size: 183 Copynumber: 2.5 Consensus size: 173
14380410 TGGCTGAGCA
14380420 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTC
* * ** *
14380485 GGACCGAGGGTTGTGG-CAG-C-AGGACT-GACAGCGGGATCGGTAGAACATAGAGGGGTACCGG
66 AGACCGAGGGTTGTGGACAGACGAGGACTCGACAGCAGGATCGACAGAACACAG-GGGG-ACCGG
* * ** * *
14380546 GCTGATCCTCGACTTGTGCATTATGCCTCTTCGACCGGTTGAGTG
129 GCCGATCCCCGACTTGTGCATTATGCCTCTTCGACCGACTAAGCG
* * *
14380591 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGCATACGG
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCA-AC--
** * ** * ** * *
14380655 AGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
62 AG-TCAGACCGAGGGT-TG-T-GGA-CAGA-CGAGGACT-CGACAGCAGGATCGACAGAACACAG
* * * *
14380720 GGGGACTGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGACTAAGCG
120 GGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTCGACCGACTAAGCG
* * **
14380774 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTC
14380839 AGACCGAGGGTTGTGG
66 AGACCGAGGGTTGTGG
14380855 TAGTGGGACC
Statistics
Matches: 207, Mismatches: 41, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
170 4 0.02
171 51 0.25
172 2 0.01
174 2 0.01
175 7 0.03
176 3 0.01
177 2 0.01
178 3 0.01
179 8 0.04
180 5 0.02
182 2 0.01
183 92 0.44
184 8 0.04
185 18 0.09
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (173 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGTC
AGACCGAGGGTTGTGGACAGACGAGGACTCGACAGCAGGATCGACAGAACACAGGGGGACCGGGC
CGATCCCCGACTTGTGCATTATGCCTCTTCGACCGACTAAGCG
Found at i:14380657 original size:26 final size:26
Alignment explanation
Indices: 14380621--14380673 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14380611 GTTGACTTAG
14380621 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
14380647 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
14380673 G
1 G
14380674 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:14380803 original size:354 final size:362
Alignment explanation
Indices: 14380196--14380854 Score: 870
Period size: 367 Copynumber: 1.8 Consensus size: 362
14380186 TCCGGCTTAC
* * *
14380196 GCATTCTGCCTCTCCGACCGACTGAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTAGACATACG
1 GCATTATGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGACATACG
* * *
14380261 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAAGGT
66 GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAAGGT
* * * *
14380326 TGCGATAGCAGGACCAGCAGCAGGATCGGTAGCACGTAGGAAGGATCGGGCTGATCCTCGGCTTG
131 TGCGACAGCAGGACCAGCAGCAGCATC-G--GCACG-AGG-AGGATCGGGCCGATCCCCGGCTTG
* * * * *
14380391 TGCAATCTGCCTTTTTAGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
191 TGCAATCTGCCTCTTCAGCCGACTAAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* *
14380456 GGAGTTCATTCCATGTCTAAGCAACAGTCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGA
256 GGAGCTCATTCCATGTCTAAGCAACAGTCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGA
14380521 TCGGTAGAACATAGAGGGGTACCGGGCTGATCCTCGACTTGT
321 TCGGTAGAACATAGAGGGGTACCGGGCTGATCCTCGACTTGT
* ** * * *
14380563 GCATTATGCCTCTTCGACCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGACATACG
* * ** *
14380628 GAGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGG
66 GAGTTCATCCCAT-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAAGG
*
14380692 TTGCGACAGCAGGATC-G-A-CAGCA-C-GCA-G-GG-GGA-CTGGGCCGATCCCCGGCTTGTGC
130 TTGCGACAGCAGGACCAGCAGCAGCATCGGCACGAGGAGGATC-GGGCCGATCCCCGGCTTGTGC
* * * *
14380748 ATTCTGCCTCTTCGGCCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGA
194 AATCTGCCTCTTCAGCCGACTAAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
**
14380813 GCTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGG
259 GCTCATTCCATGTCTAAGCAACAGTCAGACCGAGGGTTGTGG
14380855 TAGTGGGACC
Statistics
Matches: 255, Mismatches: 35, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
353 1 0.00
354 116 0.45
356 2 0.01
358 1 0.00
359 3 0.01
363 1 0.00
364 4 0.02
365 1 0.00
366 2 0.01
367 124 0.49
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (362 bp):
GCATTATGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGACATACG
GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAAGGT
TGCGACAGCAGGACCAGCAGCAGCATCGGCACGAGGAGGATCGGGCCGATCCCCGGCTTGTGCAA
TCTGCCTCTTCAGCCGACTAAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGC
TCATTCCATGTCTAAGCAACAGTCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGGT
AGAACATAGAGGGGTACCGGGCTGATCCTCGACTTGT
Found at i:14381152 original size:26 final size:26
Alignment explanation
Indices: 14381122--14381174 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14381112 GTTGCCTTAG
14381122 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14381148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14381174 G
1 G
14381175 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14381531 original size:26 final size:26
Alignment explanation
Indices: 14381501--14381553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14381491 GTTGACTTAG
14381501 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14381527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14381553 G
1 G
14381554 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14385683 original size:17 final size:17
Alignment explanation
Indices: 14385661--14385700 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
14385651 TACCTCAATG
14385661 GTCTCCTTGCCTTTCCA
1 GTCTCCTTGCCTTTCCA
*
14385678 GTCTCCTTGCCTTTCTA
1 GTCTCCTTGCCTTTCCA
14385695 GTCTCC
1 GTCTCC
14385701 AAGCTGCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.05, C:0.40, G:0.12, T:0.42
Consensus pattern (17 bp):
GTCTCCTTGCCTTTCCA
Found at i:14388367 original size:26 final size:26
Alignment explanation
Indices: 14388334--14388415 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
14388324 TGGGTTGACT
14388334 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
14388360 TAGGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* * *
14388386 TAAGCATACGAAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
14388412 TAAG
1 TAAG
14388416 ATTGGACCGG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:14389271 original size:26 final size:26
Alignment explanation
Indices: 14389220--14389273 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
14389210 TGGGTTGACT
*
14389220 TAGGCATACGCAGTTCATCCGTAGTC
1 TAGGCATACGCAGTTCATCCGCAGTC
*
14389246 TAGGCATACGGAGTTCATTCC-CAGTC
1 TAGGCATACGCAGTTCA-TCCGCAGTC
14389272 TA
1 TA
14389274 AGATCTGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGCAGTTCATCCGCAGTC
Found at i:14389612 original size:159 final size:157
Alignment explanation
Indices: 14389246--14389751 Score: 394
Period size: 159 Copynumber: 3.2 Consensus size: 157
14389236 ATCCGTAGTC
* * * * *
14389246 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGAC-CAGACTGAGGGTTACGGTAGTAGGATC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGA-AC-GAGGGTTGCGGCAGCAGGATC
* * * ** * *
14389310 GACAGCACGCAGAGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTTTTCGGTCGGCTGAG
64 GACAGCACGCAGAGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTTCCCGCTCGGCTCAG
*
14389375 CACCCGCACGCCCGTTTCGTGGGTTGGCT
129 CACCCGCACGCCCGTTTCGTGGGTTGACT
* * ** * * * * *
14389404 TAGGCATAGGGAGTTCATT-CCATGTCTATGCCCCAGTCGGACCAAGGGTTGTGGCAGCCGGA-C
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGAACGAGGGTTGCGGCAGCAGGATC
* * * *
14389467 AGGCAGCATGCAGAGGGGGACCAAGTCGTTCCCCGGCTTGCGCATTATGCCTCTCCCGCT-GGCT
64 -GACAGCACGCAGA-GGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCT-TCCCGCTCGGCT
** * *
14389531 CAGTGCCCGCACGCTCGTTTTGTGGGTTGACT
126 CAGCACCCGCACGCCCGTTTCGTGGGTTGACT
* *
14389563 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAACGAGGGTTGCGGTAGCAAGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGAACGAGGGTTGCGGCAGCAGGATCG
* ** * * * * * * ** * * * * *
14389628 ACAGAACATAGGGTGGGATCGAGCTGAACCCTGGGATACACATTCTGCC-TCTCCGGTCGGCTGA
65 ACAGCACGCAGAG-GGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTTC-CCGCTCGGCTCA
* ** * *
14389692 GCGCCCATACGCTCGTTTCGTGGGTTGGCT
128 GCACCCGCACGCCCGTTTCGTGGGTTGACT
14389722 TAGGCATACGGAGTTCATT-CCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG
14389752 CATACGAAGT
Statistics
Matches: 269, Mismatches: 66, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 60 0.22
159 194 0.72
160 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGAACGAGGGTTGCGGCAGCAGGATCGA
CAGCACGCAGAGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTTCCCGCTCGGCTCAGCA
CCCGCACGCCCGTTTCGTGGGTTGACT
Found at i:14389756 original size:26 final size:26
Alignment explanation
Indices: 14389725--14389777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14389715 GTTGGCTTAG
*
14389725 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCACA-GTCTAA
14389751 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
14389777 G
1 G
14389778 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:14390105 original size:159 final size:159
Alignment explanation
Indices: 14389895--14390263 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 159
14389885 CTGAGTGCCC
* *
14389895 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG-CCAG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG-ACCAGACCAG
* *
14389959 ACCGAGGGTTG-TGGC-AGCAGGACGGGCAGCACGCAAAGGG-GTACCGGGCCGATCCCCGACTT
65 ACCGAGGGTTGCT-GCTA-CAGGACGGACAGCACG-AAAGGGCGGACCGGGCCGATCCCCGACTT
14390021 GCGCATTATGCCTCTTCGATCGACACAGCACAT
127 GCGCATTATGCCTCTTCGATCGACACAGCACAT
* * *
14390054 GCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCAGACCAG
** * * *
14390118 ACCGAGGGTTGCTGCTACAGGATTGACAGCACGTAAGGGCGGATCGGGTCGATCCCCGACTTGCG
65 ACCGAGGGTTGCTGCTACAGGACGGACAGCACGAAAGGGCGGACCGGGCCGATCCCCGACTTGCG
* * * * ** **
14390183 TATTTTGCCTC-TCTACCCTG-CTGAGC-GTT
130 CATTATGCCTCTTCGA-TC-GACACAGCACAT
* ** *
14390212 CGCACACTCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCT
1 -GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCT
14390264 GAGCATACGG
Statistics
Matches: 177, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
158 15 0.08
159 156 0.88
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGACCAGA
CCGAGGGTTGCTGCTACAGGACGGACAGCACGAAAGGGCGGACCGGGCCGATCCCCGACTTGCGC
ATTATGCCTCTTCGATCGACACAGCACAT
Found at i:14391001 original size:26 final size:26
Alignment explanation
Indices: 14390965--14391014 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14390955 GACTTAGGCG
14390965 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
14390991 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
14391015 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:14391499 original size:26 final size:26
Alignment explanation
Indices: 14391463--14391513 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14391453 TTGGCTTAGG
*
14391463 CATACCGAGTTCATT-CCACGTCTAAC
1 CATACAGAGTTCATTCCCA-GTCTAAC
14391489 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
14391514 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:14391786 original size:171 final size:171
Alignment explanation
Indices: 14391529--14391844 Score: 386
Period size: 171 Copynumber: 1.8 Consensus size: 171
14391519 GATCGGATCA
* * * *
14391529 AGGGTTGCGGCAGCAGGACCAGCAATAGGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCC
1 AGGGTTGCGGCAGCAGGACCAACAACAGGATCGACAGCACGCAGAGGGGGACCGGGTCAATCCCC
* * * * ** *
14391594 AGCTTGTGCATTCTACCTCTCCGACCGGCTGAACGCCTGCATGCTCGTTTC-ATGGGTTGGCTTT
66 AGCTTATGCATTATACCTCTCCGACCGGCTGAACGCCCGCACGCTCGTTTCGA-GGGTTAACTTA
14391658 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAG
130 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAG
* * * * * *
14391700 AGGGTTGTGGCAGCAGGACCAACAGCGGGATCGGCAGCACGCAGAGGGGGATCGGG-CTAATCCT
1 AGGGTTGCGGCAGCAGGACCAACAACAGGATCGACAGCACGCAGAGGGGGACCGGGTC-AATCCC
* * **
14391764 C-GACTTATGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCGAGGGTTAACTT
65 CAG-CTTATGCATTATACCTCTCCGACCGGCTGAACGCCCGCACGCTCGTTTCGAGGGTTAACTT
*
14391828 AGGCATATGGAGTTCAT
129 AGGCATACGGAGTTCAT
14391845 CCCCAGTCTA
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 2 0.02
171 117 0.98
172 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.21
Consensus pattern (171 bp):
AGGGTTGCGGCAGCAGGACCAACAACAGGATCGACAGCACGCAGAGGGGGACCGGGTCAATCCCC
AGCTTATGCATTATACCTCTCCGACCGGCTGAACGCCCGCACGCTCGTTTCGAGGGTTAACTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAG
Found at i:14392120 original size:513 final size:496
Alignment explanation
Indices: 14390923--14392543 Score: 1532
Period size: 513 Copynumber: 3.2 Consensus size: 496
14390913 CTCCCTAGTG
* *
14390923 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
14390988 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGCAACAGCAGGATCGATA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGTAGGATCGATA
* * * * * *
14391053 GCACGCAGAGGGTACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCC
131 GCACGAAG-GGGGA-TCGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG-C
*
14391118 CGCACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
193 CGCACGCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * *
14391183 ATTGAGGGTTGTGGCAGCGGGACCGACAGCACACAAAGGGGGACTGGGCCAATCCCTTGCTTGCG
257 ACTGAGGGTTGTGGCAGCAGGACCAACAGCACACAAAGGGGGACTGGGCCAATCCCTCGCTTACG
* * *
14391248 CATTATGCCTCTCCGGTCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
322 CATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGAGGGTTAACTTAGGCATACAG
* * * * * *
14391313 AGTTTATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTACGATAGTAAGATCGACAACACACAG
387 AGTTCATCCCCAGTCTAAGATCGGATCGGACCAAGGGATACGACAGTAAGATCGACAACACACAA
* ** * * *
14391378 GGGGCACCGAGATGATCCCTGGCTTGCACATCTGCCTCTCTGGCC
452 AGGGCACCGAGACAATCCCTGGCTTGCACATCTACCTCTCCGCCC
* * * *
14391423 TGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATT-CCACGTCTA
1 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
* * *
14391487 ACCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGCAGCAGGACCAGC
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTT------GC-GG--CAG-
* * * * * *
14391552 AATAGGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTACCTCTCCG
120 --TAGGATCGATAGCACG-A-AGGGGGATCGGCT-GATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * *
14391617 ACCGGCTGAACGCCTGCATGCTCGTTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTC
180 ACCGGCTGAGCGCC-GCACGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
*
14391682 TAAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGACCAACAGCGGGATCGGCAGCACGCAGAGG
243 TAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCAACAGC---A----CA-CA---A-AGG
* * * **
14391747 GGGA-TCGGGCTAAT-CCTCGACTTATGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGCT
296 GGGACT-GGGCCAATCCCTCG-CTTACGCATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCT
* ** **
14391810 CGTTTCGAGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGATCGGATCGGACTGAGGG
359 CATTTCGAGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCGGATCGGACCAAGGG
* * * * * * * * *
14391875 ATGCGCCAGTAGGATTGGCAGCACACAAAAGGG-ACCGGGCCAATCCCTGGCTTGTACATTCTAC
424 ATACGACAGTAAGATCGACAACACAC-AAAGGGCACCGAGACAATCCCTGGCTTGCACA-TCTAC
14391939 CTCTCCGCCC
487 CTCTCCGCCC
* *
14391949 GGCTGAGCGCATGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
14392014 GAATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGA-CTGAGGGTTGCGGTAGTAGGATCGAT
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-AAGGGTTGCGGCAGTAGGATCGAT
* * * *
14392078 AGCACGTAAGGGGGATCGAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGC
130 AGCACG-AAGGGGGATCG-GCTGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
* * *
14392143 ACGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCA
193 -CGCACG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
*** * * * * * *
14392208 GACTGAGGGTTGTGGCAGCAGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGC
256 GACTGAGGGTTGTGGCAGCAGGACCAACAGCACACAAAGGGGGACTGGGCCAATCCCTCGCTTAC
* * * * * *
14392273 GCATTATGCCTCTACGGTCGGCTCAACGCCCGTACGCTCGTTTC-ATGGGTTGACTTATGCATAC
321 GCATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGA-GGGTTAACTTAGGCATAC
* * * * * * * * * * * * **
14392337 GGAGTTCATTCCTAGTCGAAGATTGGATCGAACCAAGGGTTGC-AGCAGCAGGATCGATAGCATG
385 AGAGTTCATCCCCAGTCTAAGATCGGATCGGACCAAGGGATACGA-CAGTAAGATCGACAACACA
** ** * * * * * * **
14392401 CAGGGCGGGTCCGGGCCAATCCCCGGCTTGCGCATTCTTCCTCTTCGATC
449 CAAAG-GGCACCGAGACAATCCCTGGCTTGCACA-TCTACCTCTCCGCCC
* * * * * * *
14392451 GGCTGAGCACCCGTATGCTCTTTTCGTGGGTTGGCTTAGGCGTACGG-GTTCATT-CCATGTCTA
1 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
* * *
14392514 AGCATACGAAGTTTATTCCTAGTCTAAGAT
65 AGCATACGGAGTTCATTCCCAGTCTAAGAT
14392544 TTTGAGCCAC
Statistics
Matches: 914, Mismatches: 161, Indels: 91
0.78 0.14 0.08
Matches are distributed among these distances:
499 3 0.00
500 104 0.11
501 159 0.17
502 75 0.08
505 2 0.00
506 3 0.00
509 3 0.00
510 1 0.00
512 18 0.02
513 249 0.27
514 22 0.02
516 1 0.00
517 2 0.00
519 2 0.00
520 4 0.00
521 2 0.00
524 6 0.01
525 145 0.16
526 110 0.12
527 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (496 bp):
GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCAGTAGGATCGATA
GCACGAAGGGGGATCGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCGC
ACGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
AGGGTTGTGGCAGCAGGACCAACAGCACACAAAGGGGGACTGGGCCAATCCCTCGCTTACGCATT
ATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGAGGGTTAACTTAGGCATACAGAGTT
CATCCCCAGTCTAAGATCGGATCGGACCAAGGGATACGACAGTAAGATCGACAACACACAAAGGG
CACCGAGACAATCCCTGGCTTGCACATCTACCTCTCCGCCC
Found at i:14392173 original size:342 final size:344
Alignment explanation
Indices: 14391735--14392358 Score: 752
Period size: 342 Copynumber: 1.8 Consensus size: 344
14391725 CGGGATCGGC
* * * *
14391735 AGCACGCAGAGGGGGATCGGGCTAATCCTCGACTTATGCATTATGCCTCTCCGATCGGCTGAGTG
1 AGCACGCAGAGGGGGATCGAGCTAATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCG
* * * * * **
14391800 CCCGCACGCTCGTTTCGAGGGTTAACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGATCGGAT
66 CACGCACGCCCATTTCGAGGGTTAACTTAGGCATAGGGAGTTCAT-CCCATGTCTAAG-CCCCAT
* * *
14391864 -CGGACTGAGGGATGCGCCAGTAGGATTGGCAGCACACA-AAAGGGACCGGGCCAATCCCTGGCT
129 CCAGACTGAGGGATGCGCCAGCAGGACTGGCAGCACACAGAAAGGGACCGGGCCAATCCCTGGCT
* * * * * * *
14391927 TGTACATTCTACCTCTCCGCCCGGCTGAGCGCATGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
194 TGCACATTATACCTCTACGCCCGGCTCAACGCACGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* *
14391992 ATGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAG
259 ACGGAGTTCATTCCCAGTCGAAGAATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAG
14392057 GGTTGCGGTAGTAGGATCGAT
324 GGTTGCGGTAGTAGGATCGAT
* * * * * * *
14392078 AGCACGTA-AGGGGGATCGAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCG
1 AGCACGCAGAGGGGGATCGAGCTAATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCG
* * ** *
14392142 CACGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCC
66 CACGCACGCCCATTTCGAGGGTTAACTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCATCC
* * * * ** *
14392207 AGACTGAGGGTTGTGGCAGCAGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTG
131 AGACTGAGGGATGCGCCAGCAGGACTGGCAGCACACAGAAAGGGACCGGGCCAATCCCTGGCTTG
* * ** * * *
14392272 CGCATTATGCCTCTACGGTCGGCTCAACGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATAC
196 CACATTATACCTCTACGCCCGGCTCAACGCACGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
14392337 GGAGTTCATTCCTAGTCGAAGA
261 GGAGTTCATTCCCAGTCGAAGA
14392359 TTGGATCGAA
Statistics
Matches: 228, Mismatches: 50, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
341 6 0.03
342 121 0.53
343 101 0.44
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (344 bp):
AGCACGCAGAGGGGGATCGAGCTAATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCG
CACGCACGCCCATTTCGAGGGTTAACTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCATCC
AGACTGAGGGATGCGCCAGCAGGACTGGCAGCACACAGAAAGGGACCGGGCCAATCCCTGGCTTG
CACATTATACCTCTACGCCCGGCTCAACGCACGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCGAAGAATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGG
TTGCGGTAGTAGGATCGAT
Found at i:14392323 original size:159 final size:158
Alignment explanation
Indices: 14392159--14392516 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 158
14392149 GCCCATTTTG
* ** **
14392159 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCAGACTGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCATCCA-ACCAAGGGTTGCAGC
* * *
14392224 AGCAGGA-CTGGCAGCACGCAGAGG-GGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTA
65 AGCAGGATC-GACAGCACGCAG-GGCGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTA
* *
14392287 CGGTCGGCTCAACGCCCGTACGCTCGTTTCA
128 CGATCGGCTCAACACCCGTACGCTCGTTTCA
* * * **** *
14392318 TGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCGAAGATTGGATCGAACCAAGGGTTGCAG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG-CCCCATCCAACCAAGGGTTGCAG
* * * * * *
14392382 CAGCAGGATCGATAGCATGCAGGGCGGGTCCGGGCCAATCCCCGGCTTGCGCATTCTTCCTCTTC
64 CAGCAGGATCGACAGCACGCAGGGCGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTAC
* * * * *
14392447 GATCGGCTGAGCACCCGTATGCTCTTTTCG
129 GATCGGCTCAACACCCGTACGCTCGTTTCA
*
14392477 TGGGTTGGCTTAGGCGTACGG-GTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14392517 ATACGAAGTT
Statistics
Matches: 160, Mismatches: 34, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
158 18 0.11
159 137 0.86
160 5 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCATCCAACCAAGGGTTGCAGCA
GCAGGATCGACAGCACGCAGGGCGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTACGA
TCGGCTCAACACCCGTACGCTCGTTTCA
Found at i:14393957 original size:26 final size:26
Alignment explanation
Indices: 14393921--14393973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14393911 GTTGACTTAG
*
14393921 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
* *
14393947 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
14393973 G
1 G
14393974 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:14394242 original size:159 final size:156
Alignment explanation
Indices: 14393986--14394449 Score: 490
Period size: 159 Copynumber: 2.9 Consensus size: 156
14393976 CGGACAGGAC
* * * *
14393986 CGAGGGTTGTGAC-AGTAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCA
1 CGAGGGTTGTG-CTAGCAGGATCGACAGCACGCAGGGGGGACCGGTCCGATCCCCGACTTGCGCA
* * * * *
14394050 TTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCCCGTTTGATGGGTTCGCTTAGGCATTGGGAG
65 TTCTGCCTCTCCGACCGACTGAGCGCCTGCACGCTCGTTTCATGGGTT-GCTTAGGCATT-GGAG
* *
14394115 TTCATTCCATCTCTAAGCCCCAGTCGAAT
128 TTCATTCCATGTCTAAGCCCCACTCGAAT
* *
14394144 CGAGGGTTGTGCTAGCGGGATCGGCAGCACGCAGAGGGGGACCGGTCCGATCCCCGACTTGCGCA
1 CGAGGGTTGTGCTAGCAGGATCGACAGCACGCAG-GGGGGACCGGTCCGATCCCCGACTTGCGCA
* * * * *
14394209 TTATGCCTCTCCGACCGGCTCAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
65 TTCTGCCTCTCCGACCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTG-CTTAGGCAT-TGGAG
**** * *
14394274 TTCATTCCCA-GTCTAAGATTGGACTGGAGT
128 TTCATT-CCATGTCTAAG-CCCCACTCGAAT
* * * * *
14394304 -GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGT-CGGTACCC-AGCTTGCGC
1 CGAGGGTTGTGCTAGCAGGATCGACAGCACGCAGGGGGGA-CCGGTCCGATCCCCGA-CTTGCGC
* *
14394366 ATTCTGCCTGTCC-AGCCGACTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGG
64 ATTCTGCCTCTCCGA-CCGACTGAGCGCCTGCACGCTCGTTTCATGGGTT-GCTTAGGCAT-TGG
14394430 AGTTCATTCCATGTCTAAGC
126 AGTTCATTCCATGTCTAAGC
14394450 ATACGGAGTT
Statistics
Matches: 256, Mismatches: 39, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
157 6 0.02
158 116 0.45
159 126 0.49
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
CGAGGGTTGTGCTAGCAGGATCGACAGCACGCAGGGGGGACCGGTCCGATCCCCGACTTGCGCAT
TCTGCCTCTCCGACCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGCTTAGGCATTGGAGTTC
ATTCCATGTCTAAGCCCCACTCGAAT
Found at i:14394421 original size:158 final size:156
Alignment explanation
Indices: 14393947--14394448 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 156
14393937 CCCAGTATAA
* * ** * *
14393947 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACAGGACCGAGGGTTGTGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACTGGAATGAGGGTTGTGATAGCAGGATCGAC
* * * * * *
14394011 AACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGC
65 AGCACGCAGGGGGGA-CGGGTCGGTACCCAGCTTGCGCATTCTGCCTCTCC-GCCGACTGAGCGC
* * * *
14394076 CCGCACGCCCGTTTGATGGGTTCGCTTAG
128 CTGCACGCTCGTTTCATGGGTTGGCTTAG
** * * ** * * * * *
14394105 GCATTGGGAGTTCATTCCATCTCTAAG-CCCCAGTCGAATCGAGGGTTGTGCTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACTGGAAT-GAGGGTTGTGATAGCAGGATCGAC
* * * * * *
14394169 AGCACGCAGAGGGGGACCGGTCCG-ATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGC
65 AGCACGCAG-GGGGGACGGGTCGGTA-CCCAG-CTTGCGCATTCTGCCTCTCCG-CCGACTGAGC
* *
14394233 GCCTACACGCTCGTTTCATGGGTTGACTTAG
126 GCCTGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
14394264 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACTGGAGTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACTGGAATGAGGGTTGTGATAGCAGGATCGAC
*
14394328 AGCACGCAGGGGGGATCGGGTCGGTACCCAGCTTGCGCATTCTGCCTGTCCAGCCGACTGAGCGC
65 AGCACGCAGGGGGGA-CGGGTCGGTACCCAGCTTGCGCATTCTGCCTCTCC-GCCGACTGAGCGC
*
14394393 CTGCACGCTCATTTCATGGGTTGGCTTAG
128 CTGCACGCTCGTTTCATGGGTTGGCTTAG
*
14394422 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14394449 CATACGGAGT
Statistics
Matches: 273, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 137 0.50
159 117 0.43
160 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACTGGAATGAGGGTTGTGATAGCAGGATCGACA
GCACGCAGGGGGGACGGGTCGGTACCCAGCTTGCGCATTCTGCCTCTCCGCCGACTGAGCGCCTG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:14394452 original size:26 final size:26
Alignment explanation
Indices: 14394422--14394474 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14394412 GTTGGCTTAG
*
14394422 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14394448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14394474 G
1 G
14394475 TTCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14394823 original size:513 final size:512
Alignment explanation
Indices: 14393883--14395158 Score: 1609
Period size: 513 Copynumber: 2.5 Consensus size: 512
14393873 TTTCTGGTCG
* ** * * *
14393883 GCTGAGCGCCCGCAGGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTATAA
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
14393947 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTT---GT----G---A-CAG
65 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGTAGAGGACCAGCAG
* * * * *
14394001 TAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
130 CAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCCGGCC
* * * * *
14394066 AACTGAGCGCCCGCACGCCCGTTTGATGGGTTCGCTTAGGCATTGGGAGTTCATTCCATCTCTAA
195 GACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * *
14394131 GCCCCAGTCGAATCGAGGGTTGTGCTAGCGGGATCGGCAGCACGCAGAGGGGGACCGGTCCGATC
260 GCCCCAGTCGAACCAAGGGTTGTGCTAGCGGGATCGGCAACACGCAGAGGGGGACCGGGCCGATC
* ** * * *
14394196 CCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTACACGCTCGTTTCATGGGTTGACT
325 CCCGACTTGCGCATTATACCTCTCCGACCAACTCAACACCCACACGCTCGTTTCATGGGTTGACT
* ** ** * *
14394261 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGAGTGAGGGTTGCGGTAGCAGGATCG
390 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCG
* * *
14394326 ACAGCACGCAGGGGGGATCGGGTCGGTACCCAGCTTGCGCATTCTGCCTGTCCAGCC-
455 ACAGCACGCAGGGGGGACCGGGTCGGTACCCAGCTTGCACATTCTGCCTCTCCAGCCA
* * *
14394383 GACTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
1 G-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
14394448 GCATACGGAGTTCATTCCCAGTCTAAGTTCAGACAGGACCAAGGGTTGCGGTAGCAGGACCAGCA
65 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGTAG-AGGACCAGCA
* * * * * *
14394513 GCAGGATCGATAGCACGCATGGGGGTATCGGTCTGATCCTCGTCTTGTGCATTCTGCCTCTCCGA
129 GCAGGATCGATAGCACGCA-GGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCCGG
** * *
14394578 CCGACTGAGCGCCCATACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAG-TAATTCCATGTCT
193 CCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* *
14394642 AAGCCCTAG-CTGAACCAAGGGTTGTGGC-AGCGGGATCGGCAACACGCAGAGGGGGATCGGGCC
258 AAGCCCCAGTC-GAACCAAGGGTTGT-GCTAGCGGGATCGGCAACACGCAGAGGGGGACCGGGCC
* * * * * *
14394705 GATCCTCGGCTTGCGCATTATACCTTTTCTG-CCAACTCAACACCCGCACGCTCGTTTCGTGGGT
321 GATCCCCGACTTGCGCATTATACC-TCTCCGACCAACTCAACACCCACACGCTCGTTTCATGGGT
* *
14394769 TGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAG
385 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAG
* * * ** *
14394834 GATCGACAGCACGCAGGGGGGACCGGGTCGGTCCCCGGCTTGCACTTTCTGCCTCTCTGGTCA
450 GATCGACAGCACGCAGGGGGGACCGGGTCGGTACCCAGCTTGCACATTCTGCCTCTCCAGCCA
* *
14394897 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCTTGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * **
14394962 CATACAGAGTTCATTCCCACTCTAAGATCGGACCA-GACCGAGGCTTGCGACAGTAGGACCAGCA
66 CATACAGAGTTCATTCCCAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGTAG-AGGACCAGCA
* *
14395026 GCAGGATC-AGTAGCACACAGGGGGGACCGGGCCGATCCCCATCTTGTGCATTCTGCCTCTCCGG
129 GCAGGATCGA-TAGCACGCAGGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCCGG
* * *
14395090 TCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCT
193 CCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
14395155 AAGC
258 AAGC
14395159 ATATGGAGTT
Statistics
Matches: 656, Mismatches: 98, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
500 4 0.01
501 93 0.14
504 2 0.00
509 1 0.00
512 86 0.13
513 380 0.58
514 90 0.14
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (512 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCGGTAGAGGACCAGCAGC
AGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGTCTTGTGCATTCTGCCTCTCCGGCCG
ACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCCAGTCGAACCAAGGGTTGTGCTAGCGGGATCGGCAACACGCAGAGGGGGACCGGGCCGATCC
CCGACTTGCGCATTATACCTCTCCGACCAACTCAACACCCACACGCTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGA
CAGCACGCAGGGGGGACCGGGTCGGTACCCAGCTTGCACATTCTGCCTCTCCAGCCA
Found at i:14394854 original size:158 final size:159
Alignment explanation
Indices: 14394674--14394961 Score: 346
Period size: 158 Copynumber: 1.8 Consensus size: 159
14394664 TGTGGCAGCG
* * * * *
14394674 GGATCGGCAACACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATACCTTTTCT-GCC
1 GGATCGACAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATACC-TCTCTGGCC
* * *
14394738 AACTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAA
65 AACTCAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
14394803 GATCGGACCAGACCGAGGGTTACGATAGCA
130 GATCGGACCAGACCGAGGGTTACGATAGCA
* * * * * * *
14394833 GGATCGACAGCACGCAG-GGGGGACCGGGTCGGTCCCCGGCTTGCACTTTCTGCCTCTCTGGTCA
1 GGATCGACAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCTGGCCA
* * * * * * **
14394897 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCTTGTCTAAG
66 ACTCAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14394962 CATACAGAGT
Statistics
Matches: 105, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
157 4 0.04
158 86 0.82
159 15 0.14
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GGATCGACAACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCTGGCCA
ACTCAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCAGACCGAGGGTTACGATAGCA
Found at i:14394985 original size:26 final size:26
Alignment explanation
Indices: 14394937--14394987 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14394927 TGGCTTAGGT
* ***
14394937 ATACGGAGTTCATTCCTTGTCTAAGC
1 ATACAGAGTTCATTCCCACTCTAAGC
14394963 ATACAGAGTTCATTCCCACTCTAAG
1 ATACAGAGTTCATTCCCACTCTAAG
14394988 ATCGGACCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCACTCTAAGC
Found at i:14395161 original size:26 final size:26
Alignment explanation
Indices: 14395131--14395183 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14395121 GTTGGCTTAG
14395131 GCATA-GGCAGTTCATT-CCATGTCTAA
1 GCATATGG-AGTTCATTCCCA-GTCTAA
14395157 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14395183 G
1 G
14395184 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:14396099 original size:26 final size:26
Alignment explanation
Indices: 14396060--14396112 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14396050 GTTGACTTTG
* * *
14396060 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAATCTAA
*
14396086 GCATACGGAATTCATTCCCAATCTAA
1 GCATACGGAATTCATCCCCAATCTAA
14396112 G
1 G
14396113 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAATCTAA
Found at i:14396815 original size:26 final size:26
Alignment explanation
Indices: 14396772--14396823 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14396762 TGACTTAGGC
14396772 ATACAGAGTTCATCCCCAATCTAAGA
1 ATACAGAGTTCATCCCCAATCTAAGA
* * * *
14396798 ATACGGAGTTTATTCCCAGTCTAAGA
1 ATACAGAGTTCATCCCCAATCTAAGA
14396824 TCGAACAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGA
Found at i:14397097 original size:159 final size:158
Alignment explanation
Indices: 14396831--14397138 Score: 438
Period size: 159 Copynumber: 1.9 Consensus size: 158
14396821 AGATCGAACA
* * *
14396831 GGACAGAGGGTTGTGGCAGTAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGC
1 GGACAGAGGGTTGTGGCAGCAGAATCGACAGCACACAGGGGGGACCAAGCCGATCCCCGGCTTGC
* * * *
14396896 ACATTCTACCTCTCCGGCCGACTGAGCGCCTGCATGCCCGTTTCATGGGTTGTCTTAGGCATAG-
66 ACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT-GC
14396960 GGAGTTCATTCCATGTCTAAACCCCAGCC
130 GGAGTTCATTCCATGTCTAAACCCCAGCC
* * * *
14396989 GGACAGAGGGTTGTGGCAGCAGAATGGGCAGCACATAGAGGGGGACCAAGTCGATCCCCGGCTTG
1 GGACAGAGGGTTGTGGCAGCAGAATCGACAGCACACAG-GGGGGACCAAGCCGATCCCCGGCTTG
* * ** * *
14397054 CGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATGC
65 CACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATGC
14397119 GGAGTTCATTCCATGTCTAA
130 GGAGTTCATTCCATGTCTAA
14397139 GCATACGGAG
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
158 34 0.26
159 97 0.74
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GGACAGAGGGTTGTGGCAGCAGAATCGACAGCACACAGGGGGGACCAAGCCGATCCCCGGCTTGC
ACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATGCG
GAGTTCATTCCATGTCTAAACCCCAGCC
Found at i:14397149 original size:26 final size:26
Alignment explanation
Indices: 14397113--14397165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14397103 GTTGGCTTAG
* *
14397113 GCATGCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
14397139 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
14397165 G
1 G
14397166 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:14397866 original size:26 final size:26
Alignment explanation
Indices: 14397837--14397889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14397827 GTTGACTTAG
14397837 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
14397863 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14397889 G
1 G
14397890 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14398722 original size:26 final size:26
Alignment explanation
Indices: 14398692--14398744 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14398682 GTTGACTTAG
14398692 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14398718 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14398744 G
1 G
14398745 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14399368 original size:26 final size:26
Alignment explanation
Indices: 14399339--14399391 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14399329 GTTGACTTAG
*
14399339 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14399365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14399391 G
1 G
14399392 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14399433 original size:196 final size:195
Alignment explanation
Indices: 14399092--14399640 Score: 608
Period size: 184 Copynumber: 2.9 Consensus size: 195
14399082 TGCGCATTCT
* * * * * **
14399092 GCCTCTCCGACCGGCTGAGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATACACAGTTCA
1 GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
14399157 T-TCCATGTCTAAGTATACGGAGTTCATTCCCAGCCTAAGA-CTGGACCAGACCGAGGGTTGCAG
66 TCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGCGG
* * * * *
14399220 TAGCAGAATCGGTAGCACGCAGGGGGGACCGGGCGATCCCAATCTTGAGGATTCTACCTC-TCTG
129 CAGCAGGATC-GTAGCACGCAGGGGGGACCGGGCGATCCCAAGCTTGAGCATTATACCTCTTC-G
14399284 GTTG
192 GTTG
* *
14399288 GCCTCTTCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * *
14399353 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * * * ** * *
14399418 GAAGGATCAGTAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGT
131 GCAGGATC-GTAGCACGCAGGGGGGACCG-GGCGATCCCAAGCTTGAGCATTATACCTCTTCGGT
14399483 TG
194 TG
* * *
14399485 G---C-T-------C--AGCGCTCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCA
1 GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
14399537 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
*
14399602 GCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCC
131 GCAGGATCG-TAGCACGCAGGGGGGACCGGG-CGATCCC
14399641 CGACTTGCGC
Statistics
Matches: 302, Mismatches: 45, Indels: 24
0.81 0.12 0.06
Matches are distributed among these distances:
183 2 0.01
184 134 0.44
186 1 0.00
193 1 0.00
194 1 0.00
196 130 0.43
197 31 0.10
198 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (195 bp):
GCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
GCAGGATCGTAGCACGCAGGGGGGACCGGGCGATCCCAAGCTTGAGCATTATACCTCTTCGGTTG
Found at i:14399553 original size:26 final size:26
Alignment explanation
Indices: 14399523--14399575 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14399513 GTTGACTTAT
14399523 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14399549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14399575 G
1 G
14399576 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14399597 original size:184 final size:184
Alignment explanation
Indices: 14399300--14399734 Score: 550
Period size: 184 Copynumber: 2.4 Consensus size: 184
14399290 CTCTTCGACC
* * * *
14399300 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAA
1 GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
14399365 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGAAGGATC-AGT
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGAAGGATCGA-C
* * * *
14399429 AGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTT
130 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCAGTATGCCTCTTCGGTT
* *
14399484 GGCTCAGCGCTCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAA
1 GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
** *
14399549 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGAAGGATCGACA
* * * * **
14399614 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCAGTCTGCCTCTCCAGCC
131 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCAGTATGCCTCTTCGGTT
* * * * * * * * * *
14399668 AGCTGAGCACCTGCACGCCCGTTTCATGGGTTGGCTTTGGCATAGGGAATTCAT-TCCATGTCTA
1 GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
14399732 AGC
65 AGC
14399735 CCCAGTCAGA
Statistics
Matches: 215, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 3 0.01
184 211 0.98
185 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGAAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCAGTATGCCTCTTCGGTT
Found at i:14399904 original size:159 final size:157
Alignment explanation
Indices: 14399549--14399936 Score: 384
Period size: 159 Copynumber: 2.4 Consensus size: 157
14399539 CCCAGTCTAA
*
14399549 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
** * * * ** *
14399614 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCAGTCTGCCTCTCCAGCCAGCTGAGCACC
65 GCACGCAAAGAGGACCGAGCCGATCCCCGACTTACGCAGTAAGCCTCTCCAGCCAGCTCAGCACC
** *
14399679 TGCACGCCCGTTTCATGGGTTGGCTTTG
130 CACACGCCCGTTTCATGGGTTGGATTTG
* * * ** * * *
14399707 GCATAGGGAATTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCAGGAGCGAC
1 GCATACGGAGTTCATCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * ** *
14399771 AGCATGCAAAAGAGGATCGAGCTGATCCTCGGCTTACGCATTAAGCCTTTTCGGCTGGCTCAGTA
64 AGCACGC-AAAGAGGACCGAGCCGATCCCCGACTTACGCAGTAAGCCTCTCCAGCCAGCTCAGCA
* * *
14399836 CCCACACGCTCGTTTCGTGGGTT-GATTTAT
128 CCCACACGCCCGTTTCATGGGTTGGATTT-G
*
14399866 GCATACGGAGTTCAGTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
14399931 GCACGC
65 GCACGC
14399937 TGGGGGGATC
Statistics
Matches: 179, Mismatches: 45, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 60 0.34
159 111 0.62
160 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (157 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAAAGAGGACCGAGCCGATCCCCGACTTACGCAGTAAGCCTCTCCAGCCAGCTCAGCACCC
ACACGCCCGTTTCATGGGTTGGATTTG
Found at i:14400050 original size:26 final size:26
Alignment explanation
Indices: 14400020--14400072 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14400010 GTTGGCTCAG
14400020 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14400046 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14400072 G
1 G
14400073 ATCCGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14400781 original size:196 final size:196
Alignment explanation
Indices: 14400474--14400950 Score: 783
Period size: 196 Copynumber: 2.4 Consensus size: 196
14400464 TCGACTTGGG
** * * *
14400474 CATTCTGCCTCTCCGATAGGCTGAGTGTCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGG
1 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
14400539 AGTTCATTCCTTGTCCAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
66 AGTTCATTCCTTGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
* * *
14400604 ACGATAGCAGGACCAGCAGTAGGATCGACAGCACGCAAAGGGGATCGGGCTGAACCTCAGCTTGC
131 ACGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAAAGGGGACCGGGCTGAACCTCAGCTTGC
14400669 A
196 A
* *
14400670 CATTCTGCCTCTCCGACCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
1 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
14400735 AGTTCATTCCTTGTCGAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
66 AGTTCATTCCTTGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
*
14400800 ACGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAAGGGGACCGGGCTGAACCTCAGCTTGC
131 ACGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAAAGGGGACCGGGCTGAACCTCAGCTTGC
14400865 A
196 A
* * * *
14400866 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGCTTCGTGGGTTGGCTTAGGCATGCGG
1 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
14400931 AGTTCATTCCATGTCTAAGC
66 AGTTCATTCCTTGTCCAAGC
14400951 CGCAGCCGAA
Statistics
Matches: 260, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 260 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (196 bp):
CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCTTGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
ACGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAAAGGGGACCGGGCTGAACCTCAGCTTGC
A
Found at i:14401120 original size:171 final size:170
Alignment explanation
Indices: 14400753--14401122 Score: 413
Period size: 171 Copynumber: 2.2 Consensus size: 170
14400743 CCTTGTCGAA
* * * *
14400753 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACTGGACCGAGGGTTACGGCAGCAGGACCAGC
1 GCATACGGAGTTCA-TCCCAGTCTAAGCAGCAGACCGAACCGAGGGTTACGGCAACAGGACCAGC
*
14400817 AGCAGGATCGACAGCACGCAAAGGGGACCGGGCTGAACCTCAGCTTGCACATTCTGCCTCTCCGA
65 AGCAGGATCGACAGCACGCAAAGGGGACCGGGCTGAACCTCAGCTTGCACATTATGCCTCTCCGA
* *
14400882 CCGGCTGAGCGCCCGCACGCTCGCTTCGTGGGTTGGCTTAG
130 CCGGCTGAGCACCCGCACGCTCGCTTCGTGGGTTGACTTAG
* * * * **
14400923 GCATGCGGAGTTCATTCCATGTCTAAGCCGCAG-CCGAACTGAGGGTTGTGGCAACAGGACC-GA
1 GCATACGGAGTTCATCCCA-GTCTAAGCAGCAGACCGAACCGAGGGTTACGGCAACAGGACCAG-
* * * * ** * * * *
14400986 CAGCGGGATCGACAGCATGTAGAGGGGGGTCGGGTTGATCCTCGGCTTGCGCATTATGCCTCTCC
64 CAGCAGGATCGACAGCACGCA-AAGGGGACCGGGCTGAACCTCAGCTTGCACATTATGCCTCTCC
* * * * * *
14401051 GGCCGGCTTAGCACTCGCATGCTCGTTTCGTGGGTTGACTTTG
128 GACCGGCTGAGCACCCGCACGCTCGCTTCGTGGGTTGACTTAG
14401094 GCATACGGAGTTCATCCCTAGTCTAAGCA
1 GCATACGGAGTTCATCCC-AGTCTAAGCA
14401123 TACCGATTTC
Statistics
Matches: 163, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
169 5 0.03
170 60 0.37
171 97 0.60
172 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (170 bp):
GCATACGGAGTTCATCCCAGTCTAAGCAGCAGACCGAACCGAGGGTTACGGCAACAGGACCAGCA
GCAGGATCGACAGCACGCAAAGGGGACCGGGCTGAACCTCAGCTTGCACATTATGCCTCTCCGAC
CGGCTGAGCACCCGCACGCTCGCTTCGTGGGTTGACTTAG
Found at i:14401123 original size:26 final size:26
Alignment explanation
Indices: 14401094--14401172 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
14401084 GTTGACTTTG
14401094 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
14401120 GCATACCGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14401146 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14401172 G
1 G
14401173 ATAAGATCGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 43 0.91
27 4 0.09
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14401594 original size:158 final size:156
Alignment explanation
Indices: 14401146--14401650 Score: 420
Period size: 159 Copynumber: 3.2 Consensus size: 156
14401136 CCCAGTCTAA
* * * *
14401146 GCATATGGAGTTCATTCCCA-GTCTAAGATAAGATCGGACTGACGGTTGCGGCAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGAC-GA-GGTTGAGGCAGCAGGATCGAC
* * * * *
14401210 GGCACGCACGCAGGGGGACCGGGTCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
63 AGCACG-A--AAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAG
* * *
14401275 CACCCGCACG-TCCATTT-AGTGGGTT-AGCTTAG
125 CGCCCTCACGCT-CGTTTCA-TGGGTTGA-CTTAG
** * * * *
14401307 GCATA-GGAAGTTCATTCCATGTCTAAGCCCCTAG-TCGAACCGAGGTTGTGGTAGC-GAGACCG
1 GCATACGG-AGTTCATTCCATGTCTAAG-ATC-AGATCGGA-CGAGGTTGAGGCAGCAG-GATCG
* * * * * * *
14401369 ATAGCACGCAAAGAGGTACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTC-GACTGGCTCA
61 ACAGCACG-AAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGAC-GGCTGA
*
14401433 GCGCCCTCACGCTCGTTTCATGGGTTGACTTAT
124 GCGCCCTCACGCTCGTTTCATGGGTTGACTTAG
*
14401466 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGAGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGA-CGA-GGTTGAGGCAGCAGGATCGAC
* * * * * *
14401530 CGCATGTAAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
63 AGCACGAAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
* * *
14401595 CTGTGCA--CTCGTTTCGTGGGTTGGCTTAG
128 C-CT-CACGCTCGTTTCATGGGTTGACTTAG
14401624 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14401651 CATACGGAGT
Statistics
Matches: 276, Mismatches: 49, Indels: 41
0.75 0.13 0.11
Matches are distributed among these distances:
157 4 0.01
158 99 0.36
159 106 0.38
160 17 0.06
161 41 0.15
162 6 0.02
163 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACGAGGTTGAGGCAGCAGGATCGACAGC
ACGAAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCCCT
CACGCTCGTTTCATGGGTTGACTTAG
Found at i:14401660 original size:26 final size:26
Alignment explanation
Indices: 14401624--14401676 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14401614 GTTGGCTTAG
14401624 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14401650 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14401676 G
1 G
14401677 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14401768 original size:11 final size:11
Alignment explanation
Indices: 14401752--14401778 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14401742 TCACCATTGC
14401752 CGGAGCATCAT
1 CGGAGCATCAT
14401763 CGGAGCATCAT
1 CGGAGCATCAT
14401774 CGGAG
1 CGGAG
14401779 AGCCTAACTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.33, T:0.15
Consensus pattern (11 bp):
CGGAGCATCAT
Found at i:14402382 original size:26 final size:26
Alignment explanation
Indices: 14402352--14402407 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14402342 TGGGTTGACT
*
14402352 TAAGCAGACGGAGTTCATACCCTGTC
1 TAAGCAGACGGAGTTCATACCCAGTC
* *
14402378 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCAGACGGAGTTCATACCCAGTC
14402404 TAAG
1 TAAG
14402408 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATACCCAGTC
Found at i:14402566 original size:26 final size:26
Alignment explanation
Indices: 14402530--14402582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14402520 GTTAGCTTAG
*
14402530 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14402556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14402582 G
1 G
14402583 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14402769 original size:26 final size:26
Alignment explanation
Indices: 14402740--14402792 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14402730 GTTGACTTAG
14402740 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14402766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14402792 G
1 G
14402793 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14403244 original size:158 final size:156
Alignment explanation
Indices: 14402766--14403257 Score: 512
Period size: 159 Copynumber: 3.1 Consensus size: 156
14402756 CCCAGTCTAA
* * * * *
14402766 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCAAGGGTTGTGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTGACAGCTGGATCGAC
* **
14402830 AGCACGCAGGGGGG-CCGAGCCGATCCCTGGCTTGCGCATTCTATCTCTCCGACCGACTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGC
*
14402894 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTT-GCTTAG
** * *
14402923 GCATA-GTGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCTGGACCG
1 GCATACG-GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGACAGCTGGATCG
* * ** * * ** * * *
14402985 ACAACACGCAGAGGGGGACCGGGTCGATCCCCACCTTGCACATTATGCCTCTTGGGCCGATTCAG
63 ACAGCACGCAG-GGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAG
*
14403050 CGCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCATGGGTTG-CTTAG
* * * *
14403082 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCT-ACATCTTGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGACAGCTGGATCGAC
* *
14403146 AGCACGCAGGGGGGACTGGGCCGATCTCCGGCTTGCGCATTCTGCCTCTCCAACC-AGCTGAGCG
65 AGCACGCAGGGGGGACCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCG
* *
14403210 CCCGCACGCTCGTTCCGTGGGTTAGCTTAG
128 CCCGCACGCTCGTTTCATGGGTT-GCTTAG
*
14403240 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
14403258 ATGTCAAGCA
Statistics
Matches: 270, Mismatches: 50, Indels: 29
0.77 0.14 0.08
Matches are distributed among these distances:
156 4 0.01
157 54 0.20
158 93 0.34
159 111 0.41
160 8 0.03
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCTGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGCTTAG
Found at i:14410652 original size:26 final size:26
Alignment explanation
Indices: 14410616--14410668 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14410606 GTTGGCTTAG
*
14410616 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
14410642 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
14410668 G
1 G
14410669 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:14411374 original size:26 final size:26
Alignment explanation
Indices: 14411338--14411390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14411328 GTTGACTTAG
*
14411338 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14411364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14411390 G
1 G
14411391 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14411845 original size:159 final size:159
Alignment explanation
Indices: 14411364--14412983 Score: 1014
Period size: 159 Copynumber: 10.2 Consensus size: 159
14411354 CCCAGTTTAA
* * ** * * *
14411364 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
** * * * * * *
14411429 GCACATAG-GGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAG-TG
66 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCT-
* * * *
14411492 CCCGTACGCCCGTTTCGTGGGTTGACTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
** * * * ** * * * * *
14411522 GCATA-GGTAGTTCATTCCGTGTCTAAG-CCCCAGTCAAACAGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGG-AGTTCATTCCAAGTCTAAGATCCGACT-GGACTGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
14411585 CAACACGAAGAGGGGGACCGGGCCGATCCTC-GCTTGCGCATTATGCCTCTCCAGCCGGCTCAGC
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGC
* *
14411649 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
129 TCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** *
14411680 GCATATGGAGTTCATTCCAAGTATAAGATTGGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * * * *
14411745 GCACGTAGAGGGGGACCGAGCCAATCCCTAGCTTGCACATTCTACCTCTCTGGTCAGCTGAGCTC
66 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCTC
*
14411810 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
14411839 GAATATGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGA-CTGGACTGAGGGTTGCGGCAGCAGGATCGAC
** **
14411903 AGCACGCAGAGGGGGACCGGGTTGATCCCCGGCTTG-AGCATTATGCCTCTCCAATCGGCTGAGA
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCA-CATTATGCCTCTCCGGTCGGCTGAG-
* * * * *
14411967 GT-TCGCACGCTCGTTTCATGGGTTGACTTAG
128 CTCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * *
14411998 GCATATGGAGTTCATCCCCAGTCTAACATCGGA-TCGGA-TCGAGGGTTGCGGTAGCAAGATCGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGACT-GGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * * * * ** * *
14412061 TAGCACGCTGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCCCTTCGACCGACGGAGC
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGC
* * *
14412125 ACCCGCACGCCCATTTTGTGGGTTGGCTTAG
129 TCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * ** * * *
14412156 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCAGACAGAGGGTTATGGCAACGGGATCGGC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGACT-GGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * **
14412220 AGCACGTAGAAGGGGATCGGGCCAATCCCTGGCTTACGGATTATGCCTCT----T---C-G-G-T
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCT
* * *
14412275 --CG---GCTCATTT-ATGGGTTAAG-TTAT
130 CCCGCACGCTCATTTCGTGGGTT-GGCTTAG
* * * * * * *
14412299 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
14412364 GCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCTC
**
14412428 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
14412457 GCATACGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGA-TCGAGGGTTGTGGCAGTAGGATAGG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGA-CTGGACT-GAGGG-T-T-GC---------GG
* * * * *
14412520 TAGCAGGATCGACAGCACGCA-AAGGGGACCGAGCTGATCCCCGGCTTG-AGCATTATGCCTCTT
52 CAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCA-CATTATGCCTCTC
* ** *
14412583 CGGCCGGCTGAGCGT-CCGCACGCTCATTTTATGGGTTGACTTAG
116 CGGTCGGCTGAGC-TCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** *
14412627 GCATACGGAGTTTATTCCCAGTATAAGATTGGA-TCGGACTGAGGGTTGCGGCAGCAGGATTGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGACT-GGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
14412691 AACACGAAGGGGGGGACCGGGTCGATCCCCGACTTGCACATTTTACCTCTCCGATCGGCTGAGCT
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCT
* *
14412756 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
14412786 GCATACGGAGTTCATTCCATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGTAGCAGGATAGGT
1 GCATACGGAGTTCATTCCAAGTCTAAGATCCGA-CTGGACTGA-GG--GT--T-GC------GGC
* * ** *
14412850 AGCAGGATCGACAGCACGTAGAGGGGGACCGAGCTAATCCCCGACTTG-AGCATTATGCCTCTCC
53 AGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCA-CATTATGCCTCTCC
* * *
14412914 GGCCGGCTGAGCGT-CCGCACGCTCATTTCATGGGTTGACTTAG
117 GGTCGGCTGAGC-TCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
14412957 GCATAAGGAGTTCATCCCGAGTCTAAG
1 GCATACGGAGTTCATTCCAAGTCTAAG
14412984 CATACAGAGT
Statistics
Matches: 1113, Mismatches: 273, Indels: 139
0.73 0.18 0.09
Matches are distributed among these distances:
142 33 0.03
143 60 0.05
144 10 0.01
146 1 0.00
147 2 0.00
149 1 0.00
150 2 0.00
151 2 0.00
152 1 0.00
154 2 0.00
157 15 0.01
158 349 0.31
159 382 0.34
160 7 0.01
161 2 0.00
162 2 0.00
164 1 0.00
165 2 0.00
167 2 0.00
168 1 0.00
169 1 0.00
170 120 0.11
171 114 0.10
172 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCCGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCTC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:14412078 original size:317 final size:316
Alignment explanation
Indices: 14411364--14412983 Score: 1602
Period size: 317 Copynumber: 5.1 Consensus size: 316
14411354 CCCAGTTTAA
* * *
14411364 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
14411429 GCAC-ATAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAG-TG
65 GCACGAT-GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCT-
* * * * *
14411492 CCCGTACGCCCGTTTCGTGGGTTGACTTAGGCATA-GGTAGTTCATTCCGTGTCTAAGCCCCAGT
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCCAGC
** * * * * * * *
14411556 CAAACAGAGGGTTGTGGTAGCGGGACCGACAACACGAAGAGGGGGACCGGGCCGATCCTC-GCTT
192 CGGACAGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTT
* * * *
14411620 GCGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
257 GAGCATTATGCCTCTCCAGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * *
14411680 GCATATGGAGTTCATTCCAAGTATAAGATTGGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
14411745 GCACG-TAGAGGGGGACCGAGCCAATCCCTAGCTTGCACATTCTACCTCTCTGGTCAGCTGAGCT
65 GCACGAT-G-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCT
* *
14411809 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGAATATGGAGTTCATTCCATGTCTAAGCCCCAGCC
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
14411874 GGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCCCGGCTTG
193 GGACAGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTG
** * * *
14411939 AGCATTATGCCTCTCCAATCGGCTGAGAGTTCGCACGCTCGTTTCATGGGTTGACTTAG
258 AGCATTATGCCTCTCCAGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAG
* * * * * * **
14411998 GCATATGGAGTTCATCCCCAGTCTAACATCGGATCGGATCGAGGGTTGCGGTAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * ** * * *
14412063 GCACGCTGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCCCTTCGACCGACGGAGCACC
65 GCACGATGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCTCC
* * * * * *
14412128 CGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * * * ** *
14412193 ACAGAGGGTTATGGCAACGGGATCGGCAGCACGTAGAAGGGGATCGGGCCAATCCCTGGCTT-AC
195 ACAGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGA-
* * * * *
14412257 GGATTATGCCTCT---------T-CG-GT-CG---GCTCATTT-ATGGGTTAAGTTAT
259 GCATTATGCCTCTCCAGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAG
* * * *
14412299 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGCGGCAGCAGGATCGACA
* *
14412364 GCACGCA-GGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 GCACG-ATGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCTC
*
14412428 CCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
14412493 GATC-GAGGGTTGTGGCAGTAGGATAGGTAGCAGGATCGACAGCACGCA-AAGGGGACCGAGCTG
194 GA-CAGAGGGTTGTGGC------------AGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTG
* * *
14412556 ATCCCCGGCTTGAGCATTATGCCTCTTCGGCCGGCTGAGCGTCCGCACGCTCATTTTATGGGTTG
246 ATCCCCGGCTTGAGCATTATGCCTCTCCAGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTG
14412621 ACTTAG
311 ACTTAG
* * * * *
14412627 GCATACGGAGTTTATTCCCAGTATAAGATTGGATCGGACTGAGGGTTGCGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
14412692 ACACGAAGGGGGGGACCGGGTCGATCCCC-GACTTGCACATTTTACCTCTCCGATCGGCTGAGCT
65 GCACG-ATGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCT
* *
14412756 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCC
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
14412821 GGACCGAGGGTTGTGGTAGCAGGATAGGTAGCAGGATCGACAGCACGTAGAGGGGGACCGAGCTA
193 GGACAGAGGGTTGT-G--GC---------AGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTG
* *
14412886 ATCCCCGACTTGAGCATTATGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTG
246 ATCCCCGGCTTGAGCATTATGCCTCTCCAGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTG
14412951 ACTTAG
311 ACTTAG
*
14412957 GCATAAGGAGTTCA-TCCCGAGTCTAAG
1 GCATACGGAGTTCATTCCC-AGTCTAAG
14412984 CATACAGAGT
Statistics
Matches: 1078, Mismatches: 177, Indels: 84
0.81 0.13 0.06
Matches are distributed among these distances:
301 186 0.17
302 8 0.01
305 2 0.00
306 2 0.00
307 1 0.00
308 1 0.00
312 33 0.03
313 17 0.02
315 1 0.00
316 62 0.06
317 305 0.28
318 115 0.11
319 2 0.00
321 1 0.00
322 1 0.00
323 2 0.00
324 2 0.00
327 9 0.01
328 72 0.07
329 153 0.14
330 101 0.09
332 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTTGCGGCAGCAGGATCGACAG
CACGATGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCTCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CAGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGAGC
ATTATGCCTCTCCAGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:14412636 original size:170 final size:168
Alignment explanation
Indices: 14412354--14412984 Score: 655
Period size: 170 Copynumber: 3.8 Consensus size: 168
14412344 TTGCGACAGT
* * * * * * *
14412354 AGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGTC
1 AGGATCGACAGCACGCAAGGGGGACCGAGCTGATCCCCGA-CTTGAGCATTATGCCTCTCCGGCC
* ** * *
14412418 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAA
* *
14412483 GCCCCAGCCGGATCGAGGGTTGTGGCAGTAGGATAGGTAGC
129 GCCCTAGCCGGA-CGAGGGTTGTGGCAGCAGGATAGGTAGC
* * *
14412524 AGGATCGACAGCACGCAAAGGGGACCGAGCTGATCCCCGGCTTGAGCATTATGCCTCTTCGGCCG
1 AGGATCGACAGCACGCAAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTCCGGCCG
* * *
14412589 GCTGAGCGTCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTATAAG
66 GCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
** * * * *
14412654 -ATTGGATCGGACTGAGGGTTGCGGCAGCAGGAT-TG-A-C
130 CCCTAG-CCGGAC-GAGGGTTGTGGCAGCAGGATAGGTAGC
* * * * * **
14412691 A--A-C-AC-G-AAG--GGGGGGACCG-GGTCGATCCCCGACTTGCA-CATTTTACCTCTCCGAT
1 AGGATCGACAGCACGCAAGGGGGACCGAGCT-GATCCCCGACTTG-AGCATTATGCCTCTCCGGC
* * * *
14412746 CGGCTGAGC-TCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
64 CGGCTGAGCGT-CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCT
*
14412810 AAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGATAGGTAGC
127 AAGCCCTAGCCGGA-CGAGGGTTGTGGCAGCAGGATAGGTAGC
* *
14412853 AGGATCGACAGCACGTAGAGGGGGACCGAGCTAATCCCCGACTTGAGCATTATGCCTCTCCGGCC
1 AGGATCGACAGCACGCA-AGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTCCGGCC
* *
14412918 GGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCGAGTCTAA
65 GGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
14412983 GC
129 GC
14412985 ATACAGAGTT
Statistics
Matches: 371, Mismatches: 64, Indels: 51
0.76 0.13 0.10
Matches are distributed among these distances:
158 6 0.02
159 108 0.29
160 5 0.01
161 3 0.01
162 3 0.01
163 2 0.01
164 2 0.01
165 2 0.01
166 2 0.01
167 3 0.01
168 3 0.01
169 3 0.01
170 130 0.35
171 95 0.26
172 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (168 bp):
AGGATCGACAGCACGCAAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTCCGGCCG
GCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
CCTAGCCGGACGAGGGTTGTGGCAGCAGGATAGGTAGC
Done.