Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 109 of 402
Found at i:14413871 original size:171 final size:170
Alignment explanation
Indices: 14413586--14413894 Score: 394
Period size: 171 Copynumber: 1.8 Consensus size: 170
14413576 AGAGGGTTGC
* * *
14413586 GGTAGCAGGATCAACAGCACGTAGGGGGTGACCAGGTCGATCCCCGACTTACGCATTTTGCCTCT
1 GGTAGCAGGATCAACAGCACGCAGGGGGTGACCAGGTCAATCCCCGACTTACGCATTATGCCTCT
* * * * *
14413651 CCGATCGACTGAGCTCCCTCACGCTCATTTCCTGGGTTGGCTTAGGCATACGAAGTTCAT-TCCA
66 CCGACCGACTGAGCT-CCTCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA
14413715 TGTCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGCAGGATA
130 -GTCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGCAGGATA
* * *
14413757 GGTAGCAGGATCGACAGCACGCAGAGGGG-GACC-GGGCTAATCCCCGGCTTGA-GCATTATGCC
1 GGTAGCAGGATCAACAGCACGCAG-GGGGTGACCAGGTC-AATCCCCGACTT-ACGCATTATGCC
* * *
14413819 TCTCTGACCGGCTGAGCGT-CTGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATC
63 TCTCCGACCGACTGAGC-TCCT-CACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATC
14413883 CCCAGTCTAAGC
126 CCCAGTCTAAGC
14413895 ATACAGAGTT
Statistics
Matches: 118, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
170 5 0.04
171 104 0.88
172 9 0.08
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (170 bp):
GGTAGCAGGATCAACAGCACGCAGGGGGTGACCAGGTCAATCCCCGACTTACGCATTATGCCTCT
CCGACCGACTGAGCTCCTCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAG
TCTAAGCCCCAGCCGGATTGAGGGTTGTGGCAGCAGGATA
Found at i:14413897 original size:26 final size:26
Alignment explanation
Indices: 14413867--14413919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14413857 GTTGACTTAG
*
14413867 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14413893 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14413919 G
1 G
14413920 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14415065 original size:26 final size:26
Alignment explanation
Indices: 14415036--14415088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14415026 GTTGACTTAG
14415036 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14415062 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14415088 G
1 G
14415089 ACCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14415349 original size:157 final size:159
Alignment explanation
Indices: 14415062--14415562 Score: 520
Period size: 157 Copynumber: 3.2 Consensus size: 159
14415052 CCCAGTCTAA
* * * * * * *
14415062 GCATATGGAGTTCATTCCCA-GTCTAAG-ACCAGACTGGACAGAGGGTTGTGGTAGTAGGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCACTAGACCGGACCGAGGGTTGGGGCAGCAGGATCGA
* * * ** *
14415125 CAGCACGTAAGGGGGACC-AGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGC
65 CAGCACGCAAGGGGGACCGA-GCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
* *
14415189 GCCCGCACGCCCGTTTTGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
14415220 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGA-C-AGGGTTGTGGCAGCGGGA-CTGG
1 GCATAGGGAGTTCATTCCATGTCTAAGCACTAGACCGGACCGAGGGTTGGGGCAGCAGGATC-GA
* * * * *
14415281 CAGCACGCAAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCAGTCGGCTCAGC
65 CAGCACGC-AAGGGGGACCGAGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
* * *
14415346 GCCCGCACACTCATTTCGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
14415377 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGAGGGTTGGGGTAGCAGGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCACTAGACCGGACCGAGGGTTGGGGCAGCAGGATCGA
* * ** * *
14415440 CAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGC-CATTCTGCCTCTCCGGTCGGTTGAGCG
65 CAGCACGCAAGGGGGACCGAGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCG
*
14415504 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
14415534 GCAT-GCAGAGTTCATTCCATGTCTAAGCA
1 GCATAG-GGAGTTCATTCCATGTCTAAGCA
14415563 TATGGAGTTC
Statistics
Matches: 281, Mismatches: 49, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
155 1 0.00
156 28 0.10
157 170 0.60
158 54 0.19
159 27 0.10
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCACTAGACCGGACCGAGGGTTGGGGCAGCAGGATCGAC
AGCACGCAAGGGGGACCGAGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14415951 original size:26 final size:26
Alignment explanation
Indices: 14415916--14415968 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14415906 TTGACTTAAG
14415916 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
14415942 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14415968 G
1 G
14415969 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14416441 original size:27 final size:27
Alignment explanation
Indices: 14416411--14416468 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
14416401 CGTGACTTGA
14416411 CTAAGGCATACAGAGTTCA-TCCCTAGT
1 CTAAGGCATACAGAGTTCATTCCC-AGT
*
14416438 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACAGAGTTCATTCCCAGT
14416464 CTAAG
1 CTAAG
14416469 ATCAGATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATTCCCAGT
Found at i:14416570 original size:184 final size:184
Alignment explanation
Indices: 14416258--14416672 Score: 478
Period size: 184 Copynumber: 2.3 Consensus size: 184
14416248 GTTGATTTAT
* * * * * *
14416258 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAAGGTTGCGGCAGCAGGAATGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAAGAATGACA
* * * * *
14416323 ACACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTATGCCTTTTCGACCGGTTGAGCGCC
66 ACACGCAGAGGGGACCAGGCCCATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGCTGAGCGCC
** *
14416388 CGCATGCTCGTTTCGTGACTTGACTAAGGCATACAG-AGTTCATCCC-TAGTCTAA
131 CGCACACCCGTTTCGTGACTTGACTAAGGCATA-AGCAGTTCATCCCAT-GTCTAA
*
14416442 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGGCAGCAAG-ATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAAGAAT-GAC
* * * * ***
14416506 AGCACGCTGAGGGGATC-GAGCCCATCCCCGGCTTGCGCATTCTGCCTTTTCGGTTGGCTGAGCG
65 AACACGCAGAGGGGACCAG-GCCCATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGCTGAGCG
* ** * * * *
14416570 CCTGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAA
129 CCCGCACACCCGTTTCGTGACTTGACTAAGGCATAAGCAGTTCATCCCATGTCTAA
* * *
14416626 GCATATGGACTTCATTCCCAGTCTAAGATCAGATCGGCCCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
14416673 GGGGTAGCAG
Statistics
Matches: 194, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
183 4 0.02
184 189 0.97
185 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAAGAATGACA
ACACGCAGAGGGGACCAGGCCCATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGCTGAGCGCC
CGCACACCCGTTTCGTGACTTGACTAAGGCATAAGCAGTTCATCCCATGTCTAA
Found at i:14416789 original size:881 final size:861
Alignment explanation
Indices: 14414965--14416627 Score: 2064
Period size: 881 Copynumber: 1.9 Consensus size: 861
14414955 CATCTGTTCA
* *
14414965 ATCCCCAACTTATGCA-TCTTGCCTCTCTGGTCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 ATCCCCGACTTATGCATTC-TGCCTCTCTGGCCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
14415029 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCAG
65 GACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCAG
* * * * * *
14415094 ACTGGACAGAGGGTTGTGGTAGTAGGATCGACAGCACGTAAGGGGGACCAGGCTGATCCTCGGCT
129 ACCGGACAGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGGGGGACCAAGCCGATCCCCGGCT
* * * * **
14415159 TGCGCATTCTGCCTCTCTGGTCGGCTAAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCAT
194 TGCGCATTCTGCCTCTCCGGCCAGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
* * * *
14415224 AGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACAGGGTTGTGGCAGCGGGACTGGCAGCACGC
259 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGGGTTGTGGCAGCGGGACCGACAGCACAC
* * * * *
14415289 AAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGCCCGCAC
324 AAAGGGGGATCGGACCGATCCCCAACTTACGCATTATGCCTCTCCAGCCGACTCAACGCCCGCAC
* *
14415354 ACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGA
389 ACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGA
* * * * *
14415419 GGGTTGGGGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCCATTCTG
454 AGGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCCATTATG
** ** * * *
14415484 CCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCAGAGTTCAT
519 CCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGACTTGACTAAGGCATACAGAGTTCAT
* * * * *
14415549 TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCGG
584 CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGGC-G
* * *
14415614 TAGGACCAGCAGCAGGATCAGCAGCATACAAGGGGGACCGGGGCCTATCCCCGGCTTACGCATTC
648 -AGGACAAGCAGCA-GATCAGCAGCATA-AAGGGGGACCGGAGCCCATCCCCGGCTTACGCATTC
* *
14415679 TGCCTTTTCGACCGACTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
710 TGCCTTTTCGACCGACTGAACGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* *
14415744 ATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCTGGACCGACAGCGGGATCAACAA
775 ATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGGGGTAGCAGGACCGACAGCGGGATCAACAA
**
14415809 CACGTAGAGGAGGACCGTACTG
840 CACACAGAGGAGGACCGTACTG
* * ** *
14415831 ATCCCCGACTTTCACATTCTACCTCTTCGACTGGCCTCTTTGGCGGGCTGAGCGCCCGTATGCTC
1 ATCCCCGAC-TT---ATGC-A----TT---CT-GCCTCTCTGGCCAGCTGAGCGCCCGTACGCTC
14415896 GTTTCGTGGGTTGACTTAAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCC
53 GTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATCCC-AGTCTAAGCATATGGAGTTCATTCCC
* * * *
14415961 AGTCTAAGATC-GAACCGGACCGAGGGTTGCGGTAGCAGGATTGACAGCACG-CAGGGGGACCAA
116 AGTCTAAGACCAG-ACCGGACAGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGGGGGACCAA
* * *
14416024 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCACTCGCACGCCCGTTTCATGG
180 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTAAGCACCCGCACGCCCGTTTCATGG
* *
14416089 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGATGGTTGTGGCAGC
245 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-C-AGGGTTGTGGCAGC
* * * ** ** * *
14416154 GGGACCGACAGCACACAGAGGGGGATCGGATCGATCCTCGGCTTACGTGTTATGCCTCTTCGGCC
308 GGGACCGACAGCACACAAAGGGGGATCGGACCGATCCCCAACTTACGCATTATGCCTCTCCAGCC
* * * *
14416219 GACTCAACGCCCGCACGCTCATTTTGTGGGTTGATTTATGCATACGGAGTTCATTCCCAATCTAA
373 GACTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * *
14416284 GATCGGATCGGACTGAAGGTTGCGGCAGCAGGAAT-GACAACACGCAGGGGGGACC-AGGTCGAT
438 GATCGGACCGGACCGAAGGTTGCGGCAGCAGG-ATCGACAACACGCAGGGGGGACCGAGCT-GAT
* * * * *
14416347 CCTCGGCTTGCGCATTATGCCTTTTCGACCGGTTGAGCGCCCGCATGCTCGTTTCGTGACTTGAC
501 CCCCGGCTTGC-CATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGACTTGAC
14416412 TAAGGCATACAGAGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
565 TAAGGCATACAGAGTTCATCCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * *
14416476 CGAACCGAGGGTTACGGC-A-G-CAAG-ATC-GA-CAGCACGC-T-GA-GGGGATC-GAGCCCAT
629 CGAACCGAGGGTTACGGCGAGGACAAGCAGCAGATCAGCA-GCATAAAGGGGGACCGGAGCCCAT
* *** * * * *
14416531 CCCCGGCTTGCGCATTCTGCCTTTTCGGTTGGCTGAGCGCCTGCACACCCGTTTCGTGGGTTGGC
693 CCCCGGCTTACGCATTCTGCCTTTTCGACCGACTGAACGCCCGCACACCCATTTCGTGGGTTGGC
14416596 TTAGGCATA-GGCAGTTCATTCCATGTCTAAGC
758 TTAGGCATACGG-AGTTCATTCCATGTCTAAGC
14416628 ATATGGACTT
Statistics
Matches: 679, Mismatches: 93, Indels: 47
0.83 0.11 0.06
Matches are distributed among these distances:
866 8 0.01
867 2 0.00
868 2 0.00
869 90 0.13
870 9 0.01
871 2 0.00
873 6 0.01
874 4 0.01
876 3 0.00
877 3 0.00
878 2 0.00
879 160 0.24
880 90 0.13
881 180 0.27
882 118 0.17
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (861 bp):
ATCCCCGACTTATGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCAGAC
CGGACAGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGGGGGACCAAGCCGATCCCCGGCTTG
CGCATTCTGCCTCTCCGGCCAGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGGGTTGTGGCAGCGGGACCGACAGCACACAA
AGGGGGATCGGACCGATCCCCAACTTACGCATTATGCCTCTCCAGCCGACTCAACGCCCGCACAC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAAG
GTTGCGGCAGCAGGATCGACAACACGCAGGGGGGACCGAGCTGATCCCCGGCTTGCCATTATGCC
TCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGACTTGACTAAGGCATACAGAGTTCATCC
CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGGCGAGG
ACAAGCAGCAGATCAGCAGCATAAAGGGGGACCGGAGCCCATCCCCGGCTTACGCATTCTGCCTT
TTCGACCGACTGAACGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCCCTAGCCGGACCGAGGGTTGGGGTAGCAGGACCGACAGCGGGATCAACAACACACA
GAGGAGGACCGTACTG
Found at i:14418187 original size:26 final size:26
Alignment explanation
Indices: 14418139--14418189 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14418129 TGACTTAGGG
*
14418139 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAATCTAAGC
* **
14418165 ATACGGAGTTCATTGCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
14418190 ATTGGATTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGC
Found at i:14419036 original size:26 final size:24
Alignment explanation
Indices: 14418999--14419049 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
14418989 AGCTCGTTAT
*
14418999 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTC-TCCCC-GTCTAA
*
14419025 GCATACGAAGTTCTTCCCGTCTAA
1 GCATACGAAGTTCTCCCCGTCTAA
14419049 G
1 G
14419050 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 4 0.17
26 12 0.52
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (24 bp):
GCATACGAAGTTCTCCCCGTCTAA
Found at i:14419374 original size:159 final size:157
Alignment explanation
Indices: 14419158--14419508 Score: 361
Period size: 159 Copynumber: 2.2 Consensus size: 157
14419148 CCTGTACGCC
* * *
14419158 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGCCTAAGCCCTAGTCGGACCAAGGGT
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGCCTAAGACCTAGCCGGACCAAGGGT
* * * * **
14419223 T-TGTGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCCGGTCCCCGGCTTGCGCATTATGT
66 TGTG-GCAGCAGGACCGACAGCACGCAG-GGGGGACCGAGCCAGTCCCCGGCTTGCGCATTATAC
*
14419287 CTCTTCGATCGGCTCAACGACC-CCACGCTCA
129 CTCTCCGATCGG-TCAACG-CCACCACGCT-A
* * * * * **
14419318 -TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-CAGTCTAAGATC-AGACCGGACTGAGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GCCTAAGACCTAG-CCGGACCAAGG
* * * ** * *
14419380 GTTGTGGCAGCAGGATCGATAGCACGTAGGGGGGACCGAGCCAGTCCTTGGCTTGTGCATTCTAC
64 GTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCAGTCCCCGGCTTGCGCATTATAC
* * *
14419445 CTCTCCGATCGGTGAGCGCCAGCACGCTA
129 CTCTCCGATCGGTCAACGCCACCACGCTA
14419474 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
14419509 ACTTGTCTAA
Statistics
Matches: 156, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.02
157 41 0.26
158 41 0.26
159 69 0.44
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGCCTAAGACCTAGCCGGACCAAGGGT
TGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCAGTCCCCGGCTTGCGCATTATACCT
CTCCGATCGGTCAACGCCACCACGCTA
Found at i:14419542 original size:26 final size:26
Alignment explanation
Indices: 14419493--14419545 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14419483 GTTGGCTTAG
**
14419493 GCATACGGAGTTCATTACTTGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
14419519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
14419545 G
1 G
14419546 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:14420235 original size:26 final size:26
Alignment explanation
Indices: 14420205--14420257 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14420195 GTTGACTTAG
*
14420205 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14420231 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14420257 G
1 G
14420258 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14420859 original size:26 final size:26
Alignment explanation
Indices: 14420810--14420859 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14420800 GATCCCTGGT
* *
14420810 CATTATGCCTCTTCGGTCGGCTCGCG
1 CATTATGCCTCTTCGGCCGACTCGCG
*
14420836 CATTATGCCTTTTCGGCCGACTCG
1 CATTATGCCTCTTCGGCCGACTCG
14420860 GTGCCCGTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.10, C:0.34, G:0.24, T:0.32
Consensus pattern (26 bp):
CATTATGCCTCTTCGGCCGACTCGCG
Found at i:14421148 original size:26 final size:26
Alignment explanation
Indices: 14421118--14421170 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14421108 GTTGGCTTAG
14421118 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14421144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14421170 G
1 G
14421171 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14422323 original size:158 final size:159
Alignment explanation
Indices: 14421863--14422514 Score: 570
Period size: 158 Copynumber: 4.1 Consensus size: 159
14421853 AAGCATACAA
* * * *
14421863 AGTTCATTCCCA-GTCTAAGA-TCGGACCGGACCGAGGGTTGCGAAAGCAGGATTGGCAGCACGC
1 AGTTCATT-CCATGTCTAAGACCCAG-CCGGACCGAGGGTTGCGACAGCAGGACTGGCAGCACGC
* * * * * * *
14421926 AG-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTTTGCCTC-TCTGACCAGTTGAGTG-CTCGC
64 AGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GACCGGCTGAGCGCCT-GC
* * * *
14421988 ACACCCGTTTTATGGGTTGGCTTAGGCATAGGG
127 ACGCCCGTTTCATGGGTTAGCTTAGGCATACGG
* * * * * * * ** *
14422021 AGTTCATTCCATGTCTGAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCAGTAGCACGCAG
1 AGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGCGACAGCAGGACTGGCAGCACGCAG
* * * **
14422086 AGGGGGATCGAGCCGATCCCTGGCTTGTGCATTATGCCTCTTC-AGCCGGCTCAGCGCCCACACG
66 AGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGA-CCGGCTGAGCGCCTGCACG
* * *
14422150 CTCGTTTCATGGGTTAACTTAGGCAAACGG
130 CCCGTTTCATGGGTTAGCTTAGGCATACGG
* **** * *
14422180 AGTTCATTCCAAGTCTAAGATTGGGCCGGACCGAGGGTTACGACAGCAGGATTGGCAGCACGCAG
1 AGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGCGACAGCAGGACTGGCAGCACGCAG
* * * * *
14422245 -GAGGGA-CTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGACTGGCTGAGCGCCTGCATG
66 AGGGGGATC-GAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACG
* *
14422308 CCCGTTTCGTGGGTTAGCTTAGGCATAGGG
130 CCCGTTTCATGGGTTAGCTTAGGCATACGG
* * * * ** * *
14422338 AGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGGCCCTG-G-GAGTGGGACAGGTAGCACGC
1 AGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGG--TTGCGACAGCAGGACTGGCAGCACGC
* * * * ** *
14422401 AGCGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTTGCTGAGTGCCTGCAC
64 AGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCAC
* * *
14422466 GCTCGTTT-TTGGGTTGGCTTAGGCATACGG
129 GCCCGTTTCATGGGTTAGCTTAGGCATACGG
14422496 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
14422515 CATATGGAGT
Statistics
Matches: 389, Mismatches: 93, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 202 0.52
159 178 0.46
160 5 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGCGACAGCAGGACTGGCAGCACGCAG
AGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGC
CCGTTTCATGGGTTAGCTTAGGCATACGG
Found at i:14422443 original size:317 final size:316
Alignment explanation
Indices: 14421863--14422514 Score: 842
Period size: 317 Copynumber: 2.1 Consensus size: 316
14421853 AAGCATACAA
* *
14421863 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGAAAGCAGGATTGGCAGCACGCAG
1 AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTACGAAAGCAGGATTGGCAGCACGCAG
* * * * * *
14421928 GGGGGACCGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCTGACCAGTTGAGTGCTCGCACACC
66 GAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGACCAGCTGAGCGCTCGCACACC
* * * * *
14421993 CGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGTCGGACCGAGGG
131 CGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGG
*** * *
14422058 TTGTGGCAACGGGACCAGTAGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGTGCATTATGC
196 CCCTGGCAACGGGACCAGTAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGC
*
14422123 CTCTTCAGCCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTAACTTAGGCAAACGG
261 CTCTCCAGCCGGCTCAGCGCCCACACGCTCGTTT-ATGGGTTAACTTAGGCAAACGG
* * *
14422180 AGTTCATTCCAAGTCTAAGATTGGGCCGGACCGAGGGTTACGACAGCAGGATTGGCAGCACGCAG
1 AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTACGAAAGCAGGATTGGCAGCACGCAG
* ** **
14422245 GAGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCT-TCGACTGGCTGAGCGC-CTGCATG
66 GAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCT-GACCAGCTGAGCGCTC-GCACA
*
14422308 CCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAG
129 CCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAG
* ** * *
14422373 GGCCCTGGGAGTGGGA-CAGGTAGCACGCAGCGGGGGATCGAGCCGATCCCCGGCTTGCGCATTC
194 GGCCCTGGCAACGGGACCA-GTAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTA
* ** * * ** * ** *
14422437 TGCCTCTCCGGCTTGCTGAGTGCCTGCACGCTCGTTTTTGGGTTGGCTTAGGCATACGG
258 TGCCTCTCCAGCCGGCTCAGCGCCCACACGCTCGTTTATGGGTTAACTTAGGCAAACGG
*
14422496 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCAAGTCTAAG
14422515 CATATGGAGT
Statistics
Matches: 287, Mismatches: 45, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
316 40 0.14
317 247 0.86
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (316 bp):
AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTACGAAAGCAGGATTGGCAGCACGCAG
GAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGACCAGCTGAGCGCTCGCACACC
CGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCGGACCGAGGG
CCCTGGCAACGGGACCAGTAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGC
CTCTCCAGCCGGCTCAGCGCCCACACGCTCGTTTATGGGTTAACTTAGGCAAACGG
Found at i:14422515 original size:158 final size:158
Alignment explanation
Indices: 14421919--14422515 Score: 560
Period size: 159 Copynumber: 3.8 Consensus size: 158
14421909 CAGGATTGGC
* * * * * * * *
14421919 AGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCTGACCAGTTGAGTG-
1 AGCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * * *
14421983 CTCGCACACCCGTTT-TATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGT
66 CT-GCACGCCCGTTTCT-TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
** *
14422047 CGGACCGAGGGTTGTGGCAACGGGACCA-GT
129 CGGACCGAGGGTACTGGCAGCGGGA-CAGGT
* * * *
14422077 AGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGTGCATTATGCCTCTTC-AGCCGGCTCAGC
1 AGCACGCAG-GGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGC
** * * * * * *****
14422141 GCCCACACGCTCGTTTCATGGGTTAACTTAGGCAAACGGAGTTCATTCCAAGTCTAAGATTGGGC
64 GCCTGCACGCCCGTTTCTTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * ** *
14422206 CGGACCGAGGGTTAC-GACAGCAGGATTGGC
129 CGGACCGAGGG-TACTGGCAGCGGGACAGGT
* * * * *
14422236 AGCACGCAGGAGGGA-CTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGACTGGCTGAGCG
1 AGCACGCAGGGGGGATC-GAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
14422300 CCTGCATGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCC
65 CCTGCACGCCCGTTTCTTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
** * *
14422365 GGACCGAGGGCCCTGGGAGTGGGACAGGT
130 GGACCGAGGGTACTGGCAGCGGGACAGGT
* * ** *
14422394 AGCACGCAGCGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTTGCTGAGTG
1 AGCACGCAG-GGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
14422459 CCTGCACGCTCGTTT-TTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CCTGCACGCCCGTTTCTTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14422516 ATATGGAGTT
Statistics
Matches: 347, Mismatches: 81, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 169 0.49
159 173 0.50
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
CTGCACGCCCGTTTCTTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACCGAGGGTACTGGCAGCGGGACAGGT
Found at i:14424123 original size:26 final size:26
Alignment explanation
Indices: 14424087--14424139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14424077 TTTGATTTAG
*
14424087 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14424113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14424139 G
1 G
14424140 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14424417 original size:159 final size:160
Alignment explanation
Indices: 14424241--14424617 Score: 415
Period size: 159 Copynumber: 2.4 Consensus size: 160
14424231 CAGCTGAGTG
* * * * *
14424241 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
1 CCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* * * *
14424305 CGGACTGAGGGTTGTGGCAACGGGACCGGCAGCACGCA-GAGGGGGACCAGATCGA-TCCCCGGC
66 CGGACTGAGGGTTGCGGCAACAGGACCGGCAGCAAGCATG-GGGGGACCAG-GCGAGTCCCCGGC
* * *
14424368 TTGCGCATTATGCCTCTCCGA-TCGTCTCAACA
129 TTGCGCATTATACCTCTCCAACT-GGCTCAACA
* * * * *
14424400 CCCGAACGCTCGTTTCATGGGTTGACTTAGGCATATGGAATTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * ** * *
14424463 CCGGACTGAGGGTTGCGGTAGCAGGATTGTCAGCAAGCATGGGGGGACCAGGCTAGTCCCCGGCT
65 CCGGACTGAGGGTTGCGGCAACAGGACCGGCAGCAAGCATGGGGGGACCAGGCGAGTCCCCGGCT
* * * *
14424528 TGCGCATTCTACCTCTCCAACTGGCTGAGCC
130 TGCGCATTATACCTCTCCAACTGGCTCAACA
* *
14424559 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14424618 TACAGAGTTC
Statistics
Matches: 179, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
158 8 0.04
159 165 0.92
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
CCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CGGACTGAGGGTTGCGGCAACAGGACCGGCAGCAAGCATGGGGGGACCAGGCGAGTCCCCGGCTT
GCGCATTATACCTCTCCAACTGGCTCAACA
Found at i:14424625 original size:26 final size:26
Alignment explanation
Indices: 14424589--14424641 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14424579 GTTGGCTTAG
*
14424589 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
14424615 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
14424641 G
1 G
14424642 ATCGAATTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:14424834 original size:26 final size:26
Alignment explanation
Indices: 14424798--14424850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14424788 GTTGACTTAG
14424798 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14424824 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14424850 G
1 G
14424851 ATCCAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14425175 original size:26 final size:26
Alignment explanation
Indices: 14425139--14425191 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14425129 GTTGGCTTAG
14425139 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
14425165 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
14425191 G
1 G
14425192 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:14426917 original size:158 final size:158
Alignment explanation
Indices: 14426486--14426987 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
14426476 CCCAGTCTAA
** ** *
14426486 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATTAGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * * *
14426551 GCATGCAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTGTACCTCTTCGATCGGCTTACCGGC
66 GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAACGCC
14426616 CGCACG-TCTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * * * **
14426644 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCTA-ACCGGATCGAGGGTAATG-G-CAGCGGGGC
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATC-AGATCGGACCGAGGGT--TGCGACAGCAGGAT
* * * * *
14426705 CGACAGCACGCAGAGGGGGA-CGAGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCTGCTC
61 CGACAGCACGCAG-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCAGCTC
* * * *
14426769 AATGCCCGAACGCTCATTTCGTGGGTTGACTTAG
125 AACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14426803 GGATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* ** * * * * * ** *
14426868 GCACACAGGGGGGACCGGGTCGATCCCCAGCTTGAGCATTCTGCATCTCCGGTCAACTGAGGGCT
66 GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAACGCC
14426933 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
14426961 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCA-GTCTAAG
14426988 CATACGAAGT
Statistics
Matches: 266, Mismatches: 65, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 14 0.05
158 131 0.49
159 105 0.39
160 12 0.05
161 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAACGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14426997 original size:26 final size:26
Alignment explanation
Indices: 14426961--14427013 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14426951 GTTGGCTTAG
14426961 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
14426987 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
14427013 G
1 G
14427014 ATTGGAGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:14427649 original size:11 final size:11
Alignment explanation
Indices: 14427633--14427658 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14427623 CCCGGGGCAC
14427633 CATCGTCGGAG
1 CATCGTCGGAG
14427644 CATCGTCGGAG
1 CATCGTCGGAG
14427655 CATC
1 CATC
14427659 ACCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14428767 original size:184 final size:182
Alignment explanation
Indices: 14428410--14428751 Score: 445
Period size: 184 Copynumber: 1.9 Consensus size: 182
14428400 ACATACGGAG
* * * *
14428410 TTCATTCCCAGTCTAAGATCGATCAGACCGAGGGTTACAGCAGCAGGATCGATAGCACGCAGGGG
1 TTCATTCCCAGTCTAAGATCGACCAGACCGAGAGTTACAGCAACAGGATCGACAGCACGCAGGGG
* * * * * * *
14428475 GACTGGGCCGATCCATGGCTTACGCATTTTGCCTCTCTGACCAGCTGAGCGCCTGCACGCTCGTT
66 GACCGAGCCGATCCATGGCTTACACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCCCGTT
14428540 TCGTGGGTTGCCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAGA
131 TCGTGGGTTGCCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAGA
* *
14428592 TTCATTCCCAGTCTAAGATCAGACC-GAATCGAGAGTTACAGCAACAGGATC-AGCAGCACGTAG
1 TTCATTCCCAGTCTAAGATC-GACCAG-ACCGAGAGTTACAGCAACAGGATCGA-CAGCACGCA-
* * * * * *
14428655 GGGGGACCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGCCCGCATGCC
62 GGGGGACCGAGCCGATCCATGGCTTACACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCC
* *
14428720 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
127 CGTTTCGTGGGTTGCCTTAGGCATACGGAGTT
14428752 TATTCCATGT
Statistics
Matches: 135, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
182 22 0.16
183 31 0.23
184 82 0.61
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (182 bp):
TTCATTCCCAGTCTAAGATCGACCAGACCGAGAGTTACAGCAACAGGATCGACAGCACGCAGGGG
GACCGAGCCGATCCATGGCTTACACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCCCGTT
TCGTGGGTTGCCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAGA
Found at i:14428935 original size:26 final size:26
Alignment explanation
Indices: 14428899--14428977 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
14428889 GTTGGGGTAG
14428899 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14428925 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
14428951 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
14428977 G
1 G
14428978 AGTTTGAGCA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 49 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:14429671 original size:26 final size:26
Alignment explanation
Indices: 14429641--14429693 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14429631 GTTGACTTAG
14429641 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
14429667 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14429693 G
1 G
14429694 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14430041 original size:170 final size:170
Alignment explanation
Indices: 14429717--14430041 Score: 422
Period size: 170 Copynumber: 1.9 Consensus size: 170
14429707 GAGGGTTGCG
* *
14429717 GCAGCAGGATCGGTAGCACACAGGGGTGATCGGGTCGATCCCCGGCTTACGCATTTTGCCTCCCC
1 GCAGCAGGATCGGTAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCCTCCCC
** ** *
14429782 GACAGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGT
66 GACAGGCTGAGCACCCGCACACCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGT
* * *
14429847 CTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGACCA
131 CTAAGACCAGACCGGACCGAGGGTTACGGTAGCAGGACCA
* ** * **
14429887 GCAGCAGGATCGGTAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGTATTTTGCCTCTTC
1 GCAGCAGGATCGGTAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCCTCCCC
* *
14429952 GATC-GGCTGAGCACCCGTACGCCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CAAT
66 GA-CAGGCTGAGCACCCGCACACCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAA-
* *
14430015 GTCTAAGCCCCAG-CCGGACTGAGGGTT
129 GTCTAAG-ACCAGACCGGACCGAGGGTT
14430042 GTGGCAACGG
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
169 2 0.02
170 127 0.96
171 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (170 bp):
GCAGCAGGATCGGTAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCCTCCCC
GACAGGCTGAGCACCCGCACACCAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGT
CTAAGACCAGACCGGACCGAGGGTTACGGTAGCAGGACCA
Found at i:14431519 original size:26 final size:26
Alignment explanation
Indices: 14431489--14431541 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14431479 GTTGGCTTAG
14431489 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
14431515 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14431541 G
1 G
14431542 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14432246 original size:26 final size:26
Alignment explanation
Indices: 14432210--14432260 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14432200 TGACTTAGGC
14432210 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
14432236 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
14432261 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:14432572 original size:158 final size:156
Alignment explanation
Indices: 14432236--14432612 Score: 382
Period size: 156 Copynumber: 2.4 Consensus size: 156
14432226 CAGTCTAAGT
* * * * * *
14432236 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGACAGC
* * * * *
14432301 ATGCAGGGGGGATCGGGCCGATCCCTGGCATGTGCAATCTACCCTCTGGCCGGCTGAGCGCCGCA
66 ATGCAGGGGGGATCGGGCCGATCCCTGACATGCGCAATATACCCTCTGACCGGCTCAGCGCCGCA
* *
14432366 CGCCCGTTTCATGGGTTGGCTTAGGC
131 CGCCCATTTCATGGGTTGACTTAGGC
* * * * *
14432392 ATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTAGTAGTAGGACCGACA
1 ATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGACA
* * * * *
14432455 GCATGCAGAGGGGGAT-GGGCTGATCCCTGACTTGCGCATTATACGTCTCTGACTGGCTCAGCGC
64 GCATGCAG-GGGGGATCGGGCCGATCCCTGACATGCGCAATATAC-CCTCTGACCGGCTCAGCG-
* * ** *
14432519 CCGCCCGCTCATTTTGTGTGTTGACTTAGGC
126 CCGCACGCCCATTTCATGGGTTGACTTAGGC
* * * * * *
14432550 ATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGTGGGTTGCAGTAGCAAGATCGACA
1 ATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGACA
14432613 ACACGCGTGG
Statistics
Matches: 177, Mismatches: 37, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
155 3 0.02
156 75 0.42
157 26 0.15
158 70 0.40
159 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (156 bp):
ATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCAGCAGCAGGACCGACAGC
ATGCAGGGGGGATCGGGCCGATCCCTGACATGCGCAATATACCCTCTGACCGGCTCAGCGCCGCA
CGCCCATTTCATGGGTTGACTTAGGC
Found at i:14432626 original size:158 final size:155
Alignment explanation
Indices: 14432236--14432653 Score: 392
Period size: 158 Copynumber: 2.7 Consensus size: 155
14432226 CAGTCTAAGT
* * * * * *
14432236 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGC
* * * * * * * *
14432301 ATGCAGGGGGGATCGGGCCGATCCCTGGCATGTGCAATCTACCCTCTGGCCGGCTGAGCGCCGCA
66 ATGCGGGGGGGAT-GGGCTGATCCCTGGCTTGCGCATTATACCCTCTGACCGGCTCAGCGCCGCA
* *
14432366 CGCCCGTTTCATGGGTTGGCTTAGGC
130 CGCCCATTTCATGGGTTGACTTAGGC
* *** * * *
14432392 ATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTAGTAGTAGGACCGACA
1 ATACGGAGTTCATTCCCA-GTCT-AGGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACA
* * * *
14432455 GCATGCAGAGGGGGATGGGCTGATCCCTGACTTGCGCATTATACGTCTCTGACTGGCTCAGCGCC
64 GCATGC-GGGGGGGATGGGCTGATCCCTGGCTTGCGCATTATAC-CCTCTGACCGGCTCAGCG-C
* * ** *
14432520 CGCCCGCTCATTTTGTGTGTTGACTTAGGC
126 CGCACGCCCATTTCATGGGTTGACTTAGGC
* * *
14432550 ATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGTGGGTTGCAGTAGCAAGATCGACAAC
1 ATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGC
* * *
14432615 ACGCGTGGGGGGACCGGG-TCGGTCCCTGGCTTGCGCATT
66 ATGCG-GGGGGGA-TGGGCT-GATCCCTGGCTTGCGCATT
14432654 CTGCCTTTTC
Statistics
Matches: 205, Mismatches: 47, Indels: 17
0.76 0.17 0.06
Matches are distributed among these distances:
155 3 0.01
156 70 0.34
157 30 0.15
158 79 0.39
159 23 0.11
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.22
Consensus pattern (155 bp):
ATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGC
ATGCGGGGGGGATGGGCTGATCCCTGGCTTGCGCATTATACCCTCTGACCGGCTCAGCGCCGCAC
GCCCATTTCATGGGTTGACTTAGGC
Found at i:14432736 original size:26 final size:26
Alignment explanation
Indices: 14432707--14432759 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14432697 GTTGGCTTAG
*
14432707 GCATACGGCGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14432733 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14432759 G
1 G
14432760 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14432879 original size:185 final size:185
Alignment explanation
Indices: 14432548--14432919 Score: 480
Period size: 185 Copynumber: 2.0 Consensus size: 185
14432538 GTTGACTTAG
* * *
14432548 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGTGGGTTGCAGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCATGGGTTGCAGCAGCAAGATCGACA
* * * * * * * * *
14432613 ACACGCGTGGGGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTGCCTTTTCGATCGGCTGCGCAC
66 ACACACGTGGGAGAACCGGGTCGATCCCTGGCTTGCACATTCTGCCTTCTCGACCAGCTGAGCAC
* *
14432678 CCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGCGTTCATTCCATGTCTAA
131 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
14432733 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCATGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCATGGGTTGCAGCAGCAAGATCGACA
* *
14432798 GCACACAG-GGGAGAACCGGGTCGAT-CCTCGGCTTGCACATTCTG-CTTCTCTGACCAGTTGAG
66 ACACAC-GTGGGAGAACCGGGTCGATCCCT-GGCTTGCACATTCTGCCTTCTC-GACCAGCTGAG
* ** *
14432860 CACTCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 CACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
14432918 GC
1 GC
14432920 CCCAACCGGA
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
184 8 0.05
185 151 0.94
186 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCATGGGTTGCAGCAGCAAGATCGACA
ACACACGTGGGAGAACCGGGTCGATCCCTGGCTTGCACATTCTGCCTTCTCGACCAGCTGAGCAC
CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:14433093 original size:26 final size:26
Alignment explanation
Indices: 14433063--14433114 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14433053 GTTGACTTAG
14433063 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
14433089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
14433115 ATTGAACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:14433592 original size:26 final size:26
Alignment explanation
Indices: 14433563--14433615 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14433553 GTTGGCTTAG
*
14433563 GCATACGGCGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14433589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14433615 G
1 G
14433616 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14433718 original size:185 final size:185
Alignment explanation
Indices: 14433404--14433775 Score: 480
Period size: 185 Copynumber: 2.0 Consensus size: 185
14433394 GTTGACTTAG
* *
14433404 GCATACGGAGTTCATTCCCAGTCTAACATTAGACCGGACCAAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA
* * * * ** *
14433469 ACACATGTGGGGGGACCGGGTCGGTCCCCAGCTTGCGCATTCTGCCTTTCCGGTCGGCTGAGCAC
66 ACACATGTGGGAGAACCGGGTCGATCCCCAGCTTGCACATTCTGCCTTTCCGACCAGCTGAGCAC
* *
14433534 CCACACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGCGTTCATTCCATGTCTAA
131 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
14433589 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCATGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA
* * * *
14433654 GCACACA-G-GGGAGAACCGGGTCGATCCTCGGCTTGCACATTCTG-CTTCTCTGACCAGTTGAG
66 --ACACATGTGGGAGAACCGGGTCGATCCCCAGCTTGCACATTCTGCCTT-TCCGACCAGCTGAG
* ** *
14433716 CACTCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 CACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
14433774 GC
1 GC
14433776 CCCAACCGGA
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
184 3 0.02
185 151 0.94
186 1 0.01
187 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA
ACACATGTGGGAGAACCGGGTCGATCCCCAGCTTGCACATTCTGCCTTTCCGACCAGCTGAGCAC
CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:14433794 original size:856 final size:856
Alignment explanation
Indices: 14432135--14434147 Score: 3406
Period size: 856 Copynumber: 2.4 Consensus size: 856
14432125 CCACCCGTTC
* ** * * ** * * *
14432135 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTTGGCTGAGCACCCCGCACGCTCATTTTATGGGT
1 GATCCCTGGCTTGCGCATTATGCCTCTCGGGCTGGCTGAG-GTCCAGCACGCTCGTTTCATGGGT
* *
14432200 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAA-ATCG
* * * * * * * * *
14432265 GA-TCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGATCGGGCCGATCC-CTG
129 AACT-AGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGAGGGACCAGGTCAATCCTC-G
* * * * * * *
14432328 GCATGTGCAATCTACC-CTCTGGCCGGCTGAGCG-CCGCACGCCCGTTTCATGGGTTGGCTTAGG
192 GCTTGCGCATTTTGCCTTTCTGGCCGGCGGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
*
14432391 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTAGTAGTAGGACCGACAG
257 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTCTAGTAGTAGGACCGACAG
* *
14432456 CATGCAGAGGGGGATGGGCTGATCCCTGACTTGCGCATTATACGTCTCTGACTGGCTCAGCGCCC
322 CATGCAGAGGGGGATGGGCTGATCCCTGACTGGCGCATTATACGTCTCTGACTCGCTCAGCGCCC
* **
14432521 GCCCGCTCATTTTGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGA
387 GCCCGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGA
** * **
14432586 CCGTGGGTTGCAGTAGCAAGATCGACAACACGCGTGGGGGGACCGGGTCGGTCCCTGGCTTGCGC
452 CCAAGGGTTGCAGTAGCAAGATCGACAACACACGTGGGGGGACCGGGTCGGTCCCCAGCTTGCGC
* * *
14432651 ATTCTGCCTTTTCGATCGGCTGCGCACCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGC
517 ATTCTGCCTTTCCGATCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGC
14432716 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCATGGGTTG
582 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCATGGGTTG
14432781 CAGCAGCAGGATCGACAGCACACAGGGGAGAACCGGGTCGATCCTCGGCTTGCACATTCTGCTTC
647 CAGCAGCAGGATCGACAGCACACAGGGGAGAACCGGGTCGATCCTCGGCTTGCACATTCTGCTTC
14432846 TCTGACCAGTTGAGCACTCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
712 TCTGACCAGTTGAGCACTCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
14432911 TGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACTGACAGCGGGATCGACAGCATGCT
777 TGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACTGACAGCGGGATCGACAGCATGCT
14432976 GAGAGGGATCGGGCT
842 GAGAGGGATCGGGCT
*
14432991 GATCCCTGGCTTGCGCATTATGCCTCTCGGGCTGGCTGAGGTCCAGCATGCTCGTTTCATGGGTT
1 GATCCCTGGCTTGCGCATTATGCCTCTCGGGCTGGCTGAGGTCCAGCACGCTCGTTTCATGGGTT
* *
14433056 GACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAATTGAA
66 GACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAATCGAA
* *
14433121 CTAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGGAGGGACCAGGTCAATCCTCGGCTT
131 CTAGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGAGGGACCAGGTCAATCCTCGGCTT
*
14433186 GCGCATTTTGCCTTTCTGGCCAGCGGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
196 GCGCATTTTGCCTTTCTGGCCGGCGGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
*
14433251 GGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTCTAGTAGTAGGACCGACAGCATG
261 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTCTAGTAGTAGGACCGACAGCATG
* * * *
14433316 CAGAGGGGGATGGGCTGATCCTTGACTGGTGCATTATGCGTCTCTGACTCGCTCAGCGCCTGCCC
326 CAGAGGGGGATGGGCTGATCCCTGACTGGCGCATTATACGTCTCTGACTCGCTCAGCGCCCGCCC
*
14433381 GCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATTAGACCGGACCAA
391 GCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAA
* *
14433446 GGGTTGCAGTAGCAGGATCGACAACACATGTGGGGGGACCGGGTCGGTCCCCAGCTTGCGCATTC
456 GGGTTGCAGTAGCAAGATCGACAACACACGTGGGGGGACCGGGTCGGTCCCCAGCTTGCGCATTC
* *
14433511 TGCCTTTCCGGTCGGCTGAGCACCCACACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGCGTTC
521 TGCCTTTCCGATCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGCGTTC
14433576 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCATGGGTTGCAGC
586 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCATGGGTTGCAGC
14433641 AGCAGGATCGACAGCACACAGGGGAGAACCGGGTCGATCCTCGGCTTGCACATTCTGCTTCTCTG
651 AGCAGGATCGACAGCACACAGGGGAGAACCGGGTCGATCCTCGGCTTGCACATTCTGCTTCTCTG
14433706 ACCAGTTGAGCACTCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
716 ACCAGTTGAGCACTCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
14433771 TAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACTGACAGCGGGATCGACAGCATGCTGAGA
781 TAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACTGACAGCGGGATCGACAGCATGCTGAGA
14433836 GGGATCGGGCT
846 GGGATCGGGCT
*
14433847 GATCCCTGGCTTGCGCATTATGCCTCTCGGGCTGGCTGAGGTCCAGCACGCTCGTTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTATGCCTCTCGGGCTGGCTGAGGTCCAGCACGCTCGTTTCATGGGTT
14433912 GACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAATCGAA
66 GACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAATCGAA
*
14433977 CTAGATCGAGGGTTGCGGCAGTAGGATCGATAGCACGCAGGAGGGACCAGGTCAATCCTCGGCTT
131 CTAGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGAGGGACCAGGTCAATCCTCGGCTT
14434042 GCGCATTTTGCCTTTCTGGCCGGCGGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
196 GCGCATTTTGCCTTTCTGGCCGGCGGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
*
14434107 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC-AGGGTT
261 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
14434148 GTGGTAGCGG
Statistics
Matches: 1085, Mismatches: 68, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
854 62 0.06
855 97 0.09
856 926 0.85
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (856 bp):
GATCCCTGGCTTGCGCATTATGCCTCTCGGGCTGGCTGAGGTCCAGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAATCGAA
CTAGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGAGGGACCAGGTCAATCCTCGGCTT
GCGCATTTTGCCTTTCTGGCCGGCGGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTCTAGTAGTAGGACCGACAGCATG
CAGAGGGGGATGGGCTGATCCCTGACTGGCGCATTATACGTCTCTGACTCGCTCAGCGCCCGCCC
GCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACCAA
GGGTTGCAGTAGCAAGATCGACAACACACGTGGGGGGACCGGGTCGGTCCCCAGCTTGCGCATTC
TGCCTTTCCGATCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGCGTTC
ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCATGGGTTGCAGC
AGCAGGATCGACAGCACACAGGGGAGAACCGGGTCGATCCTCGGCTTGCACATTCTGCTTCTCTG
ACCAGTTGAGCACTCGTACGCTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACTGACAGCGGGATCGACAGCATGCTGAGA
GGGATCGGGCT
Found at i:14433955 original size:26 final size:26
Alignment explanation
Indices: 14433919--14433970 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14433909 GTTGACTTAG
14433919 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
14433945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14433971 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14434421 original size:26 final size:26
Alignment explanation
Indices: 14434392--14434441 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14434382 TGGCTTAGGT
*
14434392 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
14434418 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
14434442 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:14435147 original size:26 final size:26
Alignment explanation
Indices: 14435110--14435162 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14435100 GTTGACTTAG
*
14435110 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
*
14435136 GCATAC-GAAGTTCATTCCCAGCCTAA
1 GCATACAG-AGTTCATCCCCAGCCTAA
14435162 G
1 G
14435163 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:14435418 original size:26 final size:26
Alignment explanation
Indices: 14435387--14435439 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14435377 GGGTCGATCC
*
14435387 CGGCTTGCACATTATGCCTCTTCGAT
1 CGGCTTGCACATTATACCTCTTCGAT
14435413 CGGCTTGCACATTATACCTCTTCGAT
1 CGGCTTGCACATTATACCTCTTCGAT
14435439 C
1 C
14435440 AGCTCAGCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.34
Consensus pattern (26 bp):
CGGCTTGCACATTATACCTCTTCGAT
Found at i:14435856 original size:26 final size:25
Alignment explanation
Indices: 14435807--14435864 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
14435797 GTTGACTTAG
14435807 GCATCGGAGTTCATCCCCAATCTAA
1 GCATCGGAGTTCATCCCCAATCTAA
* * *
14435832 GCATACGGAGTTCATTCCTAGTCTAA
1 GCAT-CGGAGTTCATCCCCAATCTAA
14435858 G-ATCGGA
1 GCATCGGA
14435865 TCGGACTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 4 0.14
25 6 0.21
26 19 0.66
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
GCATCGGAGTTCATCCCCAATCTAA
Found at i:14436192 original size:158 final size:157
Alignment explanation
Indices: 14435832--14436200 Score: 379
Period size: 158 Copynumber: 2.3 Consensus size: 157
14435822 CCCAATCTAA
* * ** * * **
14435832 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGTGAAACAGGATCGGTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGAGGACCGACAG
* *
14435897 CACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCAGCTAAACGCCC
66 CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGCTAAACGCCC
* * *
14435962 GCATGTTCGTTTCGTGGGTTGGCTTAG
131 GCATGCTCGTTTCGTGGATTGACTTAG
* ** *
14435989 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACT-GAGGGTTGTGGCAGAGGACCGA
* ** ** *
14436051 CAGCACGCAGAGGGGGACCGGGCCGATCCCC-GCCTTGCGTATTATGCCTCTTTGGCTGGCTCAA
63 CAGCACGCAG-GGGGGACCGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGGCCAGCTAAA
* *
14436115 CGCCCGCACT-CTCGTTTCGTGGATTGATTTAT
126 CGCCCGCA-TGCTCGTTTCGTGGATTGACTTAG
* * * * *
14436147 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCAGACTGAGGGTTGCGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAG
14436201 CAAGATTGAT
Statistics
Matches: 170, Mismatches: 33, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.02
157 56 0.33
158 106 0.62
159 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGAGGACCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGCTAAACGCCC
GCATGCTCGTTTCGTGGATTGACTTAG
Found at i:14436335 original size:26 final size:26
Alignment explanation
Indices: 14436306--14436358 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14436296 GTTGGCTTAG
14436306 GCATACGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
14436332 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14436358 G
1 G
14436359 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14436450 original size:11 final size:11
Alignment explanation
Indices: 14436436--14436460 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14436426 ACAATCGCCA
14436436 GAGCATCGTCG
1 GAGCATCGTCG
14436447 GAGCATCGTCG
1 GAGCATCGTCG
14436458 GAG
1 GAG
14436461 AGCCTAATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:14437069 original size:26 final size:26
Alignment explanation
Indices: 14437040--14437092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14437030 GTTGACTTAG
* *
14437040 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
14437066 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
14437092 G
1 G
14437093 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:14437540 original size:158 final size:159
Alignment explanation
Indices: 14437153--14437569 Score: 534
Period size: 159 Copynumber: 2.6 Consensus size: 159
14437143 GACTGGGCTG
* * * * *
14437153 ATCCCCGGCTTGCGAATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
14437218 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGCAGCAGGA
* *
14437283 CCGGCAACACGAAGAGGGGGACCAGGCCG
131 CCGACAACACGAAGAGGGGGACCAGGCCA
* * * * * * * *
14437312 ATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTATGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
14437377 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAG
66 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCGAGGGTTGTGGCAGCAG
** * *
14437440 GATTGACAACACGCAG-GGGGGACCAGGTCA
129 GACCGACAACACGAAGAGGGGGACCAGGCCA
* * * *
14437470 ATCCCCGGCTTGCGCGTTCCACCTCTTCGACCGGCTGGGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
14437535 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14437570 TACGGAGTTC
Statistics
Matches: 216, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.01
158 96 0.44
159 114 0.53
160 3 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (159 bp):
ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTGTGGCAGCAGGA
CCGACAACACGAAGAGGGGGACCAGGCCA
Found at i:14437577 original size:26 final size:26
Alignment explanation
Indices: 14437541--14437593 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14437531 GTTGGCTTAG
14437541 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14437567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14437593 G
1 G
14437594 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14438749 original size:157 final size:157
Alignment explanation
Indices: 14438289--14438789 Score: 560
Period size: 157 Copynumber: 3.2 Consensus size: 157
14438279 CCTAGTTTAA
* * * * *
14438289 GCATACGGAGTTCATTCCCA-ATCTATGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * *
14438353 AGCATGCAAGAGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
64 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
* *
14438418 CCGCACGCCCGTTTCGGGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * *
14438447 GCATAGGGAGTTCATTCCATGTGTAA-TTCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGAT--CAACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
14438511 AGCCCGCAGAGGGGGACCGTGCTGATCCCC-AGCTTGCGTATTATGCCTCTCCGACCGGCTCAGC
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
14438575 ACCCGCACACTCATTTCGTGGGTTGACTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14438606 GCATACGGAGTTCATTCCCA-GTCTAAGATCGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
14438670 GCACGCTGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
14438735 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
14438763 GCACACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14438790 CATACAGAAT
Statistics
Matches: 278, Mismatches: 56, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 96 0.35
158 85 0.31
159 90 0.32
160 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCGGACCGAGGGTTGTGGTAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14439111 original size:171 final size:170
Alignment explanation
Indices: 14438825--14439144 Score: 408
Period size: 171 Copynumber: 1.9 Consensus size: 170
14438815 GATCAGACCG
* * *
14438825 GACCAAGGGTTGTGGCAGCAGGACCAGCAGCAGGATCAACAGCATGTAGGGGGGACCGGGCCGAT
1 GACCAAGGGTTGTGGCAGCAGGACCAGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGCCGAT
* ** * *
14438890 CCCCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGC
66 CCCCGACTTATGCATTAGGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
*
14438955 TTAGGCATACGGAGTTCATTCCATGTCTACGCCCCAGTCA
131 ATAGGCATACGGAGTTCATTCCATGTCTACGCCCCAGTCA
* * * * *** *
14438995 GACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGGTAGCACGCAGAGGGGGACCAGGCTGA
1 GACCAAGGGTTGTGGCAGCAGGACCAGCAGCAGGATCAACAGCACGCAG-GGGGGACCAGGCCGA
* * * * * *
14439060 TCCTCGGCTTATGCATTAGGGCTC-TCTGATCGGCTGAGTGCTCGTACGCTCGTTTCATGGGTTG
65 TCCCCGACTTATGCATTAGGCCTCTTC-GATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
14439124 ACATAGGCATACGGAGTTCAT
129 ACATAGGCATACGGAGTTCAT
14439145 CCCCAGTCTA
Statistics
Matches: 125, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
170 42 0.34
171 83 0.66
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.22
Consensus pattern (170 bp):
GACCAAGGGTTGTGGCAGCAGGACCAGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGCCGAT
CCCCGACTTATGCATTAGGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
ATAGGCATACGGAGTTCATTCCATGTCTACGCCCCAGTCA
Found at i:14439160 original size:26 final size:26
Alignment explanation
Indices: 14439130--14439182 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14439120 GTTGACATAG
14439130 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14439156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14439182 G
1 G
14439183 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14439465 original size:159 final size:157
Alignment explanation
Indices: 14439213--14439658 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 157
14439203 GCGATAATAG
* * * * *
14439213 GATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTACGCATTCTGCCTC-TCTGACTGG
1 GATCGATAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTCAG-C-CG
* *
14439277 C-T-GAGCACTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
64 CTTAGAGC-CT-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
14439340 GCCCTAG-CCAAACCAAGGGTTGTGGCAGCAA
127 GACC-AGACCAAACCAAGGGTTATGGCAGCAA
*
14439371 GATCGATAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCAGCCAG
1 GATCGATAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTCAGCC-G
* * * * * *
14439436 CTTAGTGCCTGCACTCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTATG
64 CTTAGAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* * ** * *
14439500 ATCAGACCAGACTGAGGGTTATGGTAGTAA
128 ACCAGACCAAACCAAGGGTTATGGCAGCAA
* * * *** * * *
14439530 GATCGACAGCACACAGGGGGGCATCAGGCCGATCCCCAACTTGCGCATTCTACCTCTTCGGCCGA
1 GATCGATAGCACGCAGGGGGG-ATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTCAGCCG-
* * * * * *
14439595 CTGAGCGACAGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
64 CTTAGAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
14439659 TATATGGTGT
Statistics
Matches: 235, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
158 26 0.11
159 197 0.84
160 9 0.04
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GATCGATAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTCAGCCGCT
TAGAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACC
AGACCAAACCAAGGGTTATGGCAGCAA
Found at i:14446268 original size:25 final size:26
Alignment explanation
Indices: 14446234--14446285 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
14446224 GTTGACTTAG
*
14446234 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
*
14446259 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
14446285 G
1 G
14446286 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:14446621 original size:159 final size:157
Alignment explanation
Indices: 14446259--14446633 Score: 459
Period size: 159 Copynumber: 2.4 Consensus size: 157
14446249 CCCAGTCTAA
* * * *
14446259 GCATAGGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAAGATCGGCA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTG-GGCAGCAGGACCGGCA
* * * * *
14446324 GCACACAGGGGGGACAAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCCGAGCGCC
65 GCACACAAGGGGGACAAGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCCGAGCACC
* *
14446389 CGCACGTTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * *
14446417 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGTAGGACCGGC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCAAGGGTTG-GGCAGCAGGACCGGC
* * **
14446481 AGCATACAAAGGGGGATC-GGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTC-AG
64 AGCACAC-AAGGGGGA-CAAGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGC-CGAG
*
14446544 CACTCGCACGCTCGTTTCGTGGGTTGACTTAG
126 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
14446576 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGGGCAGCAGGA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGGGCAGCAGGA
14446634 TTCGAATAGC
Statistics
Matches: 181, Mismatches: 31, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 65 0.36
159 109 0.60
160 5 0.03
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.20
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGGGCAGCAGGACCGGCAG
CACACAAGGGGGACAAGGCCAATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCCGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:14447579 original size:158 final size:158
Alignment explanation
Indices: 14447146--14448088 Score: 910
Period size: 158 Copynumber: 6.0 Consensus size: 158
14447136 AAGATCGGAT
** * * * * *
14447146 CGGACCGAGGGTTGTGGCAGTAGGATCGGTAGCATGCAAGGGGGACTGAGCTGATCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTG
** * * * ** *
14447211 CGTGTTCTGCCTCTCTGGCCAACTGAGCACCCTGCACACCCGTTTTGTGGGTTAGCTTAGGCATA
66 CGCATTCTGCCTCTCCGGCCGACTGAGCGCCC-GCATGCCCGTTTTGTGGGTTGGCTTAGGCATA
*
14447276 GGGAGTTCATTCCATGTCTAAGCCCCAGC
130 CGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
14447305 CAGACCGAGGGTTGTGGCAGCGGGAT-GGCAACACGCAAGGGGGACCGGGCCGGTCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTG
* * ** * * *
14447369 CACATTCTGCCTCTCCGACCGGTTGAGCGCTCGCATGCCCGTTTAGTGGGTTGGCTTAGGCATAG
66 CGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAC
*
14447434 GGAGTTCATTCCATGTCTAAGCCCCAGT
131 GGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
14447462 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAACAGGCAGGGGGGACCGGGCCGATCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTG
* * * * *
14447527 CGCATTCTGCCTCTTCGGCCGACTGAGTGCTCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAG
66 CGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAC
14447592 GGAGTTCATTCCATGTCTAAGCCCCAGC
131 GGAGTTCATTCCATGTCTAAGCCCCAGC
* ** * * * * * ***
14447620 CGAACCGACAGTTGTGGCAGAGGGACCGGCAGCAGGCAAAGGGGATCGGATTGATCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTG
* * * * * ** ** * * **
14447685 CGCATTATGCCTCTTCGGCCGGCTTAGTGCCCGCACACTAGTTTTATGGGTTGACTTATCCATAC
66 CGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAC
**
14447750 GGAGTTCATTCCCA-GTCTAAG-ATCAGAC
131 GGAGTTCATT-CCATGTCTAAGCCCCAG-C
* * ** * * * *
14447778 CGGATCGAGGGTTGCGGCAGCCAGATTGACAGCACGC-AGGAGGGACCGAGTCGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAAGG-GGGACCGGGCCGATCCCCGGCTT
* * * * * * *
14447842 GTGCATTCTACATCTCCGGTCGACTGAGCACCCGCATGCTCGTTTCT-TAGGTTGGCTTAGGCAT
65 GCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCCCGTTT-TGTGGGTTGGCTTAGGCAT
* *
14447906 ACGGAGTTCATTCCATGTCTATGCCCCAGT
129 ACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * * ** *
14447936 CAGACCGATGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACTGGGTCGATCCTTGGTTT
1 CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTT
* * * * * *
14448001 GCGCATTATGCCTCTCCGGCC-AGCTCAGCGCCCGTATGCTCATTTTGTGGGTTGACTTAGGCAT
65 GCGCATTCTGCCTCTCCGGCCGA-CTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCAT
*
14448065 ACGGAGTTCA-TCCACAGTCTAAGC
129 ACGGAGTTCATTCCA-TGTCTAAGC
14448089 ATACGGAGTT
Statistics
Matches: 640, Mismatches: 132, Indels: 24
0.80 0.17 0.03
Matches are distributed among these distances:
157 89 0.14
158 434 0.68
159 114 0.18
160 3 0.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTG
CGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:14447698 original size:316 final size:314
Alignment explanation
Indices: 14447112--14448089 Score: 1036
Period size: 316 Copynumber: 3.1 Consensus size: 314
14447102 TCCAATCTAA
* * * * *
14447112 GCATATGGAGTTCATTCCCAGTCTAAG-ATCGGATCGGACCGAGGGTTGTGGCAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCAGTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * ** *
14447176 AGCATGCAAGGGGGACTGAGCTGATCCCCGGCTTGCGTGTTCTGCCTC-TCTGGCCAACTGAGCA
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGACTGAGCA
** * *
14447240 CCCTGCACACCCGTTTTGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
129 CCC-GCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * *
14447305 CAGACCGAGGGTTGTGGCAGCGGGA-TGGCAACACGCAAGGGGGACCGGGCCGGTCCCCGGCTTG
193 CAGACCGACGGTTGTGGCAGCGGGACCGGCAGCACGCAAGGGGGA-CGGGTCGATCCCCGGCTTG
* * * * * *
14447369 CACATTCTGCCTCTCCGACCGGTTGAGCGCTCGCATGCCCGTTTAGTGGGTTGGCTTAG
257 CGCATTATGCCTCTCCGGCCGGTT-AGCGCCCGCATGCTCGTTTAGTGGGTTGACTTAG
* * *
14447428 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * **
14447492 AACAGGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCAC
*
14447557 TCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-
130 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * *
14447621 GAACCGACAGTTGTGGCAGAGGGACCGGCAGCAGGCAAAGGGGATCGGATTGATCCCCGGCTTGC
195 G-ACCGACGGTTGTGGCAGCGGGACCGGCAGCACGCAAGGGGGA-CGGGTCGATCCCCGGCTTGC
* * ** * *
14447686 GCATTATGCCTCTTCGGCCGGCTTAGTGCCCGCACACTAGTTTTA-TGGGTTGACTTAT
258 GCATTATGCCTCTCCGGCCGG-TTAGCGCCCGCATGCTCG-TTTAGTGGGTTGACTTAG
* * * * * * *
14447744 CCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCCA-GATTGA
1 GCATACGGAGTTCATT-CCAGTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAG-CAGGATCGG
* * * * * * *
14447807 CAGCACGCAGGAGGGACCGAGTCGATCCCCGGCTTGTGCATTCTACATCTCCGGTCGACTGAGCA
64 CAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCA
* * * * * *
14447872 CCCGCATGCTCGTTTCTTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCCCCAGTC
129 CCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * ** *
14447937 AGACCGATGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACTGGGTCGATCCTTGGTTTG
194 AGACCGACGGTTGTGGCAGCGGGACCGGCAGCACGCA-AGGGGGAC-GGGTCGATCCCCGGCTTG
* * * * *
14448002 CGCATTATGCCTCTCCGGCCAGCTCAGCGCCCGTATGCTCATTTTGTGGGTTGACTTAG
257 CGCATTATGCCTCTCCGGCC-GGTTAGCGCCCGCATGCTCGTTTAGTGGGTTGACTTAG
*
14448061 GCATACGGAGTTCATCCACAGTCTAAGCA
1 GCATACGGAGTTCATTC-CAGTCTAAGCA
14448090 TACGGAGTTC
Statistics
Matches: 544, Mismatches: 101, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
314 1 0.00
315 83 0.15
316 359 0.66
317 99 0.18
318 2 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCAGTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCACC
CGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGACGGTTGTGGCAGCGGGACCGGCAGCACGCAAGGGGGACGGGTCGATCCCCGGCTTGCGCA
TTATGCCTCTCCGGCCGGTTAGCGCCCGCATGCTCGTTTAGTGGGTTGACTTAG
Found at i:14448097 original size:26 final size:26
Alignment explanation
Indices: 14448061--14448113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14448051 GTTGACTTAG
14448061 GCATACGGAGTTCATCCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
* *
14448087 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
14448113 G
1 G
14448114 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:14451919 original size:26 final size:26
Alignment explanation
Indices: 14451883--14451935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14451873 GTTGACTTAG
*
14451883 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14451909 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14451935 G
1 G
14451936 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14452199 original size:159 final size:158
Alignment explanation
Indices: 14451949--14452571 Score: 552
Period size: 159 Copynumber: 3.9 Consensus size: 158
14451939 GGACCAGACC
* * * * *
14451949 GAGGGTTGCGGCAGTAGGATCGACAGCAC-ATAG-GGGGGACCAGGTCGATCCCCGGCTTACGCA
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGA-AGAGGGGGACCGGGCCGATCCCCGGCTTGCGCA
* * * * * * *
14452012 TTCTGCCTCTCCGGTCGACTGAGTGCCCGTACGCCCATTTCGTGGGTTGACTTAGGCATAGGTAG
65 TTATGCCTCTCCAGTCGGCTAAGAGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAGG-AG
* * * *
14452077 TTCATTCCGTGTCTAAGCCCCAGTCAAACA
129 TTCATTCCATGTCTAAGCCCCAGACGAACT
* * * * *
14452107 GAGGGTTGTGGTAGCGGGACCGACAACACGAAGAGGGGGACCGGGCCGATCCCCTGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
** * * * *
14452172 TATGCCTCTCCAACCGGTTCAGCGCCCGAACGCTTATTTCGTGGGTTGACTTAGGCATATGGAGT
66 TATGCCTCTCCAGTCGGCTAAGAGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATA-GGAGT
* * **** *
14452237 TCATTCCAAGTATAAG-ATTGGACTGGACT
130 TCATTCCATGTCTAAGCCCCAGAC-GAACT
* * * * * * * *
14452266 GAGGGTTGCGACAGCAGGATCGACAGCATGTAGAGGGGGACCGAGCCAATCCCCAGCTTGCACAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * * * * * * * *
14452331 TCTGCCTCTCCGGTCAGCTAAAATCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGAATACGAAGT
66 TATGCCTCTCCAGTCGGCTAAGAGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATA-GGAGT
*
14452396 TCATTCCATGTCTAAGCCCCAGCCGAACT
130 TCATTCCATGTCTAAGCCCCAGACGAACT
* * ** *
14452425 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGTTGATCCCCGGCTTGAGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * ** * * * *
14452490 TATGCCTCTCCAGTCGGCTGAGCGTTCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGT
66 TATGCCTCTCCAGTCGGCTAAGAGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATA-GGAGT
*
14452555 TCATCCCCA-GTCTAAGC
130 TCAT-TCCATGTCTAAGC
14452572 ATATGGAGTT
Statistics
Matches: 362, Mismatches: 97, Indels: 11
0.77 0.21 0.02
Matches are distributed among these distances:
158 27 0.07
159 328 0.91
160 7 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
TATGCCTCTCCAGTCGGCTAAGAGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAGGAGTT
CATTCCATGTCTAAGCCCCAGACGAACT
Found at i:14452492 original size:318 final size:317
Alignment explanation
Indices: 14451909--14453556 Score: 816
Period size: 330 Copynumber: 5.1 Consensus size: 317
14451899 CCCAGTTTAA
* * * *
14451909 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATATGGAGTTCATTCCAAGTATAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
14451974 GCACATAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGTGCC
66 GCACATAGGGGGGACCAGGCCAATCCCCAGCTTACACATTCTGCCTCTCCGGTCGACTAAATGCC
* * * * * *
14452039 CGTACGCCCATTTCGTGGGTTGACTTAGGCATAGGTAGTTCATTCCGTGTCTAAGCCCCAGTCAA
131 CGCACGCCCATTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAA
* * * *
14452104 ACAGAGGGTTGTGGTAGCGGGACCGACAACACGAAGAGGGGGACCGGGCCGATCCCCTGCTTGCG
196 ACAGAGGGTTGTGGCAGCAGGACCGACAACACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGAG
* * *
14452169 CATTATGCCTCTCCAACCGGTTCAGCGCCCGAACGCTTATTTCGTGGGTTGACTTAG
261 CATTATGCCTCTCCAACCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAG
** *
14452226 GCATATGGAGTTCATTCCAAGTATAAGATTGGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCAAGTATAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
** *
14452291 GCATGTAGAGGGGGACC-GAGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGTC-AGCTAAAA
66 GCACATAG-GGGGGACCAG-GCCAATCCCCAGCTTACACATTCTGCCTCTCCGGTCGA-CT-AAA
* * *
14452354 T-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGAATACGAAGTTCATTCCATGTCTAAGCCCCAG
127 TGCCCGCACGCCCATTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCATGTCTAAGCCCCAG
* * * * * * **
14452418 CCGAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCGGGTTGATCCCCGGCT
192 CCAAACAGAGGGTTGTGGCAGCAGGACCGACAACACGAAGAGGGGGACCGGGCCGATCCCCGGCT
** * ** * * *
14452483 TGAGCATTATGCCTCTCCAGTCGGCTGAGCGTTCGCATGCTCGTTTCATGGGTTGACTTAG
257 TGAGCATTATGCCTCTCCAACCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * * * ** * **
14452544 GCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAACAT-CGGATCGGA
1 GCATATGGAGTTCATTCCAAGTATAAG-AT-TGGA--CCAGACCGAGGGT----TGC-GA-C--A
* * ** * * ** * ** * * * * **
14452608 TCGAGGGTTGCGGTAGCAAGATCGGTAGCACGCTGAGG-GGA--CCGAGCTGATCCTCGGCTTGG
54 GC-A-GGAT-CGACAGC-ACATAGGGGGGAC-C--AGGCCAATCCCCAGCT--TACAC--ATTCT
* * ** * * * * *
14452670 GCATTTTGCCTCTTCGACCGACGGA-GCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
108 GC-CTCT-CC-GGTCGA-CTA--AATG--CCCGCACGCCCATTTCGTGGGTTGACTTAGGAATAC
* * * * * * * * * *
14452734 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTCGCAACGGGACCGGCAGCACGT
165 GAAGTTCATTCCATGTCTAAGCCCCAGCCAAACAGAGGGTTGTGGCAGCAGGACCGACAACACGA
* * * * * *
14452799 AGAGGGGGATCGGGCCAATCCCTGGCTTGTGGATTATGCCTCT---------TC-G-G-TCG---
230 AGAGGGGGACCGGGCCGATCCCCGGCTTGAGCATTATGCCTCTCCAACCGGCTCAGCGCCCGAAC
* * * *
14452849 GCTCA-TTCGTGGGTTAAGTTAT
295 GCTCATTTCATGGGTTGACTTAG
* * * * ** ** * *
14452871 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATATGGAGTTCATTCCAAGTATAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
** * * * * * * * * **
14452936 GCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGGCTCTCCGATCGACTGAGCGCC
66 GCACATAGGGGGGACCAGGCCAATCCCCAGCTTACACATTCTGCCTCTCCGGTCGACTAAATGCC
* *** * * * *
14453001 CGCGCGCTTGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCACGCCCATTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCATGTCTAAGCCCCAGCC-A
* * ** * * *
14453066 ATC-GAGGGTTGTGGCAGTAGGATAGGTAGCAGGATCGACAGCATGCAAAGGGGGACCGAGCTGA
195 AACAGAGGGTTGTGGCAGCAGGA-CCG-A-CA--A-C-AC-G-A---AGAGGGGGACCGGGCCGA
* ** * * * *
14453130 TCCCCGGCTTGAGCATTATGCCTCTTCGGCCGGCTGAGCGTCCGCACGCTCATTTTATGGGTTGA
248 TCCCCGGCTTGAGCATTATGCCTCTCCAACCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGA
14453195 CTTAG
313 CTTAG
* * * * * ** *
14453200 GCATACGGAGTTTATTCCCAGTATAAGATTGGATCGGAATGAGGGTTGCGGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCAAGTATAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * *
14453265 ACACGA-AGGGGGGGACCGGGTCGATCCCC-GACTTGCACATTCTGCCTTTCCGGTCGGCT-GA-
66 GCAC-ATA-GGGGGGACCAGGCCAATCCCCAG-CTTACACATTCTGCCTCTCCGGTCGACTAAAT
* * * * * * * *
14453326 GCTCTCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTA
128 GC-C-CGCACGCCCATTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCATGTCTAAGCCCCA
* * ** *
14453391 GCCAGACCGAGGGTTGTGGCAGCAGGATAGGTAGCAGGATCGACAGCATGCAGAGGGGGACCGAG
191 GCCAAACAGAGGGTTGTGGCAGCAGGA-CCG-A-CA--A-C-AC-G-A---AGAGGGGGACCGGG
* * ** * * * **
14453456 CTGATCCCCGACTTGAGCATTATGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTTGTGGG
244 CCGATCCCCGGCTTGAGCATTATGCCTCTCCAACCGGCTCAGCGCCCGAACGCTCATTTCATGGG
14453521 TTGACTTAG
309 TTGACTTAG
* * *
14453530 GCATAAGGAGTTCATCCCAAGTCTAAG
1 GCATATGGAGTTCATTCCAAGTATAAG
14453557 CATACAGAGT
Statistics
Matches: 1024, Mismatches: 230, Indels: 141
0.73 0.16 0.10
Matches are distributed among these distances:
301 73 0.07
302 2 0.00
303 1 0.00
304 3 0.00
305 4 0.00
306 2 0.00
307 3 0.00
308 5 0.00
309 3 0.00
310 5 0.00
311 1 0.00
312 11 0.01
313 40 0.04
314 3 0.00
315 1 0.00
316 1 0.00
317 66 0.06
318 223 0.22
319 6 0.01
320 5 0.00
322 5 0.00
323 6 0.01
324 1 0.00
325 5 0.00
326 5 0.00
327 38 0.04
328 11 0.01
329 76 0.07
330 248 0.24
331 6 0.01
332 16 0.02
333 5 0.00
334 5 0.00
335 1 0.00
336 5 0.00
337 2 0.00
338 2 0.00
339 3 0.00
340 2 0.00
341 1 0.00
343 123 0.12
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATATGGAGTTCATTCCAAGTATAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACATAGGGGGGACCAGGCCAATCCCCAGCTTACACATTCTGCCTCTCCGGTCGACTAAATGCC
CGCACGCCCATTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAA
ACAGAGGGTTGTGGCAGCAGGACCGACAACACGAAGAGGGGGACCGGGCCGATCCCCGGCTTGAG
CATTATGCCTCTCCAACCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAG
Found at i:14452574 original size:26 final size:26
Alignment explanation
Indices: 14452544--14452595 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14452534 GTTGACTTAG
14452544 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
14452570 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
14452596 CATCGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:14453246 original size:171 final size:171
Alignment explanation
Indices: 14452926--14453544 Score: 612
Period size: 171 Copynumber: 3.7 Consensus size: 171
14452916 TTGCGGCAGT
* * * * * * * * **
14452926 AGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCC-AGCTTGCGCATTCTGGCTCTCCGAT
1 AGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCCCGA-CTTGAGCATTATGCCTCTTCGGC
* * * ** * * * *
14452989 CGACTGAGCGCCCGCGCGCTTGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTA
65 CGGCTGAGCGTCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTATA
* * * * *
14453054 AGCCCCAGCCGGATCGAGGGTTGTGGCAGTAGGATAGGTAGC
130 AGACCTAGCCAGAACGAGGGTTGTGGCAGCAGGATAGGTAGC
* *
14453096 AGGATCGACAGCATGCAAAGGGGGACCGAGCTGATCCCCGGCTTGAGCATTATGCCTCTTCGGCC
1 AGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTTCGGCC
* *
14453161 GGCTGAGCGTCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTTATTCCCA-GTATA
66 GGCTGAGCGTCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTATA
* * * * * * *
14453225 AGA-TTGGATCGGAATGAGGGTTGCGGCAGCAGGAT-CG-A-C
130 AGACCTAG-CCAGAACGAGGGTTGTGGCAGCAGGATAGGTAGC
* * *
14453264 A--A-C-AC-G-A---AGGGGGGGACCG-GGTCGATCCCCGACTTGCA-CATTCTGCCT-TTCCG
1 AGGATCGACAGCATGCAGAGGGGGACCGAGCT-GATCCCCGACTTG-AGCATTATGCCTCTT-CG
* * * * *
14453317 GTCGGCTGAGC-TCTCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
63 GCCGGCTGAGCGTC-CGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
* *
14453381 CTAAGACCTAGCCAGACCGAGGGTTGTGGCAGCAGGATAGGTAGC
127 ATAAGACCTAGCCAGAACGAGGGTTGTGGCAGCAGGATAGGTAGC
*
14453426 AGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTCCGGCC
1 AGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTTCGGCC
*
14453491 GGCTGAGCGTCCGCACGCTCATTTTGTGGGTTGACTTAGGCATAAGGAGTTCAT
66 GGCTGAGCGTCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
14453545 CCCAAGTCTA
Statistics
Matches: 359, Mismatches: 64, Indels: 51
0.76 0.14 0.11
Matches are distributed among these distances:
158 9 0.03
159 110 0.31
160 4 0.01
161 1 0.00
162 3 0.01
163 1 0.00
164 3 0.01
165 2 0.01
166 3 0.01
167 1 0.00
168 3 0.01
169 1 0.00
170 19 0.05
171 191 0.53
172 8 0.02
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.23
Consensus pattern (171 bp):
AGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTTCGGCC
GGCTGAGCGTCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTATAA
GACCTAGCCAGAACGAGGGTTGTGGCAGCAGGATAGGTAGC
Found at i:14453386 original size:159 final size:159
Alignment explanation
Indices: 14453093--14453548 Score: 451
Period size: 159 Copynumber: 2.8 Consensus size: 159
14453083 TAGGATAGGT
* * *
14453093 AGCAGGATCGACAGCATGCAAAGGGGGACCGAGCTGATCCCCGGCTTGAGCATTATGCCTCTTCG
1 AGCAGGATCGACAACACGCAAAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTTCG
* *
14453158 GCCGGCTGAGCGTCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTA
66 GCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTA
14453223 TAAGATTGGATCGGAATGAGGGTTGCGGC
131 TAAGATTGGATCGGAATGAGGGTTGCGGC
* * *
14453252 AGCAGGATCGACAACACG-AAGGGGGGGACCG-GGTCGATCCCCGACTTGCA-CATTCTGCCT-T
1 AGCAGGATCGACAACACGCAA-AGGGGGACCGAGCT-GATCCCCGACTTG-AGCATTATGCCTCT
* * * * *
14453313 TCCGGTCGGCTGAGC-TCTCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-C
63 T-CGGCCGGCTGAGCGTC-CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * ** *
14453376 CATGTCTAAGACCTAG-CCAGACCGAGGGTTGTGGC
126 CA-GTATAAGA-TTGGATCGGAATGAGGGTTGCGGC
*
14453411 AGCAGGATAGGTAGCAGGATCGACAGCATGCAGAGGGGGACCGAGCTGATCCCCGACTTGAGCAT
1 AGCAGGAT-CG-A-CA--A-C-AC-GCA---A-AGGGGGACCGAGCTGATCCCCGACTTGAGCAT
* ** *
14453476 TATGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTTGTGGGTTGACTTAGGCATAAGGAGT
54 TATGCCTCTTCGGCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
14453541 TCA-TCCCA
119 TCATTCCCA
14453549 AGTCTAAGCA
Statistics
Matches: 241, Mismatches: 32, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
158 11 0.05
159 125 0.52
160 4 0.02
161 1 0.00
162 2 0.01
164 1 0.00
165 1 0.00
166 2 0.01
167 1 0.00
168 1 0.00
170 2 0.01
171 85 0.35
172 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.23
Consensus pattern (159 bp):
AGCAGGATCGACAACACGCAAAGGGGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTTCG
GCCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTA
TAAGATTGGATCGGAATGAGGGTTGCGGC
Found at i:14453473 original size:330 final size:329
Alignment explanation
Indices: 14452871--14453548 Score: 1011
Period size: 330 Copynumber: 2.1 Consensus size: 329
14452861 GTTAAGTTAT
* * *
14452871 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTATAAAATCAGACTGGAACGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
14452936 GCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGGCTCTCCGATCGACTGAGCGCC
66 ACACGAAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCC
* * * * *
14453001 CGCGCGCTTGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAG
* *
14453066 ATCGAGGGTTGTGGCAGTAGGATAGGTAGCAGGATCGACAGCATGCAAAGGGGGACCGAGCTGAT
196 ACCGAGGGTTGTGGCAGCAGGATAGGTAGCAGGATCGACAGCATGCAAAGGGGGACCGAGCTGAT
* *
14453131 CCCCGGCTTGAGCATTATGCCTCTTCGGCCGGCTGAGCGTCCGCACGCTCATTTTATGGGTTGAC
261 CCCCGACTTGAGCATTATGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTTATGGGTTGAC
14453196 TTAG
326 TTAG
* * ** *
14453200 GCATACGGAGTTTATTCCCAGTATAAGATTGGA-TCGGAATGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTATAAAATCAGACT-GGAACGAGGGTTGCGGCAGCAGGATCGAC
* * * *
14453264 AACACGAAGGGGGGGACCGGGTCGATCCCC-GACTTGCACATTCTGCCTTTCCGGTCGGCTGAGC
65 AACACGAA-GGGGGGACCGGGCCGATCCCCAG-CTTGCACATTCTGCCTCTCCGATCGACTGAGC
* * * *
14453328 TCTCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGC
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGC
*
14453393 CAGACCGAGGGTTGTGGCAGCAGGATAGGTAGCAGGATCGACAGCATGCAGAGGGGGACCGAGCT
193 CAGACCGAGGGTTGTGGCAGCAGGATAGGTAGCAGGATCGACAGCATGCAAAGGGGGACCGAGCT
*
14453458 GATCCCCGACTTGAGCATTATGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTTGTGGGTT
258 GATCCCCGACTTGAGCATTATGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTTATGGGTT
14453523 GACTTAG
323 GACTTAG
*
14453530 GCATAAGGAGTTCA-TCCCA
1 GCATACGGAGTTCATTCCCA
14453549 AGTCTAAGCA
Statistics
Matches: 312, Mismatches: 34, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
328 1 0.00
329 66 0.21
330 245 0.79
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.23
Consensus pattern (329 bp):
GCATACGGAGTTCATTCCCAGTATAAAATCAGACTGGAACGAGGGTTGCGGCAGCAGGATCGACA
ACACGAAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAG
ACCGAGGGTTGTGGCAGCAGGATAGGTAGCAGGATCGACAGCATGCAAAGGGGGACCGAGCTGAT
CCCCGACTTGAGCATTATGCCTCTCCGGCCGGCTGAGCGTCCGCACGCTCATTTTATGGGTTGAC
TTAG
Found at i:14454324 original size:158 final size:156
Alignment explanation
Indices: 14453830--14454466 Score: 436
Period size: 158 Copynumber: 3.9 Consensus size: 156
14453820 ATCAGACTGA
* * * * *
14453830 ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGTATGGGGGACCAGGCCGATCCCCGACTTACGC
1 ACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGTA-GGGGGACCAGGCTGATCCCCGGCTTGCGC
* * * * *
14453895 ATTCTGCCTCTCCGGCCGGCTGAGCGCCCATACACCCGTTTTATGGGTTGACTTAGGCATAGGGA
65 ATTCTGCCTCTCC-GCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
14453960 GTCCATTCCATGTCTCAGCCCCAGTTAG
129 GTTCATTCCATGTCTAAGCCCCAGTCAG
* * * * * * * *
14453988 ACCGAGAGTTGTGGCAACGGGACCGGTAGCACGAAGAGGGGGACC-GAGCTGATCCTCGGCTTGC
1 ACTGAGGGTTGCGGCAGCAGGATCGGTAGCACG--TAGGGGGACCAG-GCTGATCCCCGGCTTGC
* * * * * * * * *
14454052 GCATTATGCCTCTACGGCTGGCTCAACGCCTGTATGCTCATTTCGTGGGTTGACTTAGGCATACG
63 GCATTCTGCCTCT-CCGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
* **** *
14454117 GAGTTCATTCCCA-GTATAAG-ATTGGACCAG
127 GAGTTCATT-CCATGTCTAAGCCCCAG-TCAG
* * * * *
14454147 ACAGAGGGTTACGGTAGCAGGATTGATAGCACGTAGGGGCGACCAGGCTGATCCCCGGCTTGCGC
1 ACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGGGG-GACCAGGCTGATCCCCGGCTTGCGC
* * * * * * * *
14454212 ATTCTACCTCTCCGATCGACTGAGCTCCCGCACGCTCGTTTCCTGGGTTGGCTTAGGCATACGAA
65 ATTCTGCCTCTCCG-CCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
*
14454277 GTTCATTCCATGTCTAAGCCCCAGTCGG
129 GTTCATTCCATGTCTAAGCCCCAGTCAG
* * * *
14454305 ACTGAGGGTTGTGGCAGCAGGATAGGTACCAGGATCGACAGCACGCAGAGGGGGACCGGGCTAAT
1 ACTGAGGGTTGCGGCAGCAGG--A--T--C-GG-T----AGCACG--TAGGGGGACCAGGCTGAT
** * * * * * * *
14454370 CCCCGGCTTAAGCATTATGCCTATCTGACCGGCTGAGCGTCTGCACGCTCATTTCATGGGTTGAC
52 CCCCGGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGAC
*
14454435 TTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
116 TTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
14454467 ATACAGAGTT
Statistics
Matches: 357, Mismatches: 96, Indels: 39
0.73 0.20 0.08
Matches are distributed among these distances:
157 10 0.03
158 127 0.36
159 110 0.31
160 6 0.02
162 1 0.00
165 1 0.00
166 1 0.00
170 6 0.02
171 87 0.24
172 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
ACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGGGGGACCAGGCTGATCCCCGGCTTGCGCA
TTCTGCCTCTCCGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGTCAG
Found at i:14454469 original size:26 final size:26
Alignment explanation
Indices: 14454439--14454491 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14454429 GTTGACTTAG
*
14454439 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14454465 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14454491 G
1 G
14454492 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14455637 original size:26 final size:26
Alignment explanation
Indices: 14455608--14455660 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14455598 GTTGACTTAG
14455608 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
14455634 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14455660 G
1 G
14455661 ACCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14456058 original size:157 final size:158
Alignment explanation
Indices: 14455634--14456132 Score: 530
Period size: 157 Copynumber: 3.2 Consensus size: 158
14455624 CCCAATCTAA
* * *
14455634 GCATATGGAGTTCATTCCCA-GTCTAAGACCAGACCGGACAGAAGGTTGTGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAAGGTTGTGGTAGCAGGATCGAC
* * * *
14455698 AGCACGTAAGGGGGACC-AGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCG
65 AGCACGCAGGGGGGACCGA-GCTGATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCG
* * *
14455762 CCCGCACGCCCATTTTGTGGGTTGGCTTAG
129 CCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * * *
14455792 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CC-GAAC-AAGGTTGTGGCAGCGGGA-CAGG
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCGGACCGAAGGTTGTGGTAGCAGGATC-GA
* * * * * * * *
14455853 CAGCACGCAGAGAGGGATCG-GGTCGATCCCCAACTTGCGCATTATGCCTCTCCAGTCGGCTCAG
64 CAGCACGCAG-GGGGGACCGAGCT-GATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAG
*
14455917 CGCCCGCACACTCATTTCGTGGGTTGACTTAG
127 CGCCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * * *
14455949 GCATACGGAGTTAATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGGGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAAGGTTGTGGTAGCAGGATCGAC
* * *
14456013 AGCACGCAGGGGGGACCGAGCTGATCCTCAGCTTGC-CATTCTGCCTCTCCGGTCGGTTGAGCAC
65 AGCACGCAGGGGGGACCGAGCTGATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* *
14456077 CCGCACACTCGTTTCATGGGTTGGCTTAG
130 CCGCACACTCATTTCGTGGGTTGGCTTAG
* *
14456106 GCATGCGTAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14456133 CATATGGAGT
Statistics
Matches: 276, Mismatches: 52, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
155 1 0.00
156 30 0.11
157 164 0.59
158 51 0.18
159 29 0.11
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAAGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCTGATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
CGCACACTCATTTCGTGGGTTGGCTTAG
Found at i:14456516 original size:26 final size:26
Alignment explanation
Indices: 14456487--14456539 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14456477 GTTGACTTAG
14456487 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
14456513 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14456539 G
1 G
14456540 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14457012 original size:27 final size:27
Alignment explanation
Indices: 14456982--14457039 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
14456972 CGTGACTTGA
14456982 CTAAGGCATACAGAGTTCA-TCCCTAGT
1 CTAAGGCATACAGAGTTCATTCCC-AGT
*
14457009 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACAGAGTTCATTCCCAGT
14457035 CTAAG
1 CTAAG
14457040 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATTCCCAGT
Found at i:14457146 original size:184 final size:184
Alignment explanation
Indices: 14456829--14457243 Score: 478
Period size: 184 Copynumber: 2.3 Consensus size: 184
14456819 GTTGATTTAT
* * * * * *
14456829 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAAGGTTGCGGCAGTAGGAATGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGCAGTAAGAATGACA
* * **
14456894 ACACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTTTCCGATCGGTTGAGAGCC
66 ACACGCAGGGGGGACCAGGCCCATCCCCGGCTTGCGCATTATGCCTTTCCGATCGACTGAGAGCC
** * *
14456959 CGCATGCTCGTTTCGTGACTTGACTAAGGCATACAG-AGTTCATCCC-TAGTCTAA
131 CGCACACCCATTTCGTGACTTGACTAAGGCATA-AGCAGTTCATCCCAT-GTCTAA
*
14457013 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAAG-ATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGCAGTAAGAAT-GAC
* * * * * * * *
14457077 AGCACGCAGGGGGGATC-GAGCCCATCCCTGGCTTGCGCATTCTGCCTTTTCGGTTGACTGAGCG
65 AACACGCAGGGGGGACCAG-GCCCATCCCCGGCTTGCGCATTATGCCTTTCCGATCGACTGAGAG
** * * * *
14457141 CCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAA
129 CCCGCACACCCATTTCGTGACTTGACTAAGGCATAAGCAGTTCATCCCATGTCTAA
* * *
14457197 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGCCCGATGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTT
14457244 GTGGTAGCAG
Statistics
Matches: 195, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
183 4 0.02
184 190 0.97
185 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGGCAGTAAGAATGACA
ACACGCAGGGGGGACCAGGCCCATCCCCGGCTTGCGCATTATGCCTTTCCGATCGACTGAGAGCC
CGCACACCCATTTCGTGACTTGACTAAGGCATAAGCAGTTCATCCCATGTCTAA
Found at i:14457208 original size:26 final size:26
Alignment explanation
Indices: 14457171--14457223 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14457161 GTTGGCTTAG
14457171 GCATAGGCAGTTCATT-CCATGTCTAA
1 GCATAGGCAGTTCATTCCCA-GTCTAA
14457197 GCATATGG-AGTTCATTCCCAGTCTAA
1 GCATA-GGCAGTTCATTCCCAGTCTAA
14457223 G
1 G
14457224 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAGGCAGTTCATTCCCAGTCTAA
Found at i:14458743 original size:26 final size:26
Alignment explanation
Indices: 14458707--14458757 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14458697 TGACTTAGGG
*
14458707 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
**
14458733 ATACGAAGTTCATTGCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
14458758 ATTGGATTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:14459435 original size:26 final size:26
Alignment explanation
Indices: 14459398--14459450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14459388 CGCTCGTTAT
*
14459398 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14459424 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14459450 G
1 G
14459451 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14459923 original size:157 final size:157
Alignment explanation
Indices: 14459515--14459927 Score: 413
Period size: 159 Copynumber: 2.6 Consensus size: 157
14459505 CCGGTTGATC
* **
14459515 CCCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAATGCCCGTACGCCCGTTTCATGGGTTGGCT
1 CCCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAATG-CCGCACGCTAGTTTCATGGGTTGGCT
* * * * *
14459580 TAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCGGGATCG
65 TAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGGTTGTGGCAGCAGGATCG
* ** * *
14459645 GCAGCACGCAGAGGGGGATTGGGCCGGT
130 ACAGCACGCAGAGGGGGACCGAGCCAGT
* * ** * * * * *
14459673 CCCTGGCTTGCGCATTATGTCTCTTCGATCGGCTCAATGACCCCACGCTCA-TTTCGTGGGTTGA
1 CCC-GGCTTGTGCATTCTACCTCTCCGATCGGCTGAATG-CCGCACGCT-AGTTTCATGGGTTGG
* * * **
14459737 CTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGG
63 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCAAGGGTTGTGGCAGCAGG
* *
14459800 ATCGATAGCACGTAG-GGGGGACCGAGCCAGT
126 ATCGACAGCACGCAGAGGGGGACCGAGCCAGT
* **
14459831 CCTCGGCTTGTGCATTCTACCTCTCCGACCGG-TGAGCGCCAGCACGCTAGTTTCATGGGTTGGC
1 CC-CGGCTTGTGCATTCTACCTCTCCGATCGGCTGAATGCC-GCACGCTAGTTTCATGGGTTGGC
* *
14459895 TTAGGCATACGGAGTTCATTACTTGTCTAAGCA
64 TTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14459928 TACGGAATTC
Statistics
Matches: 201, Mismatches: 45, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
156 4 0.02
157 47 0.23
158 43 0.21
159 104 0.52
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
CCCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAATGCCGCACGCTAGTTTCATGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCAAGGGTTGTGGCAGCAGGATCGA
CAGCACGCAGAGGGGGACCGAGCCAGT
Found at i:14459948 original size:26 final size:26
Alignment explanation
Indices: 14459899--14459951 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14459889 GTTGGCTTAG
* **
14459899 GCATACGGAGTTCATTACTTGTCTAA
1 GCATACGGAATTCATTACCAGTCTAA
*
14459925 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTACCAGTCTAA
14459951 G
1 G
14459952 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTACCAGTCTAA
Found at i:14460638 original size:26 final size:26
Alignment explanation
Indices: 14460609--14460661 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14460599 GTTGACTTAG
*
14460609 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14460635 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14460661 G
1 G
14460662 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14463335 original size:26 final size:26
Alignment explanation
Indices: 14463299--14463351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14463289 GTTGACTTAG
14463299 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14463325 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14463351 G
1 G
14463352 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14463489 original size:26 final size:26
Alignment explanation
Indices: 14463460--14463510 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14463450 TGGCTTAGGT
14463460 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
14463486 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
14463511 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:14464217 original size:26 final size:26
Alignment explanation
Indices: 14464180--14464232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14464170 GTTGACTTAG
* *
14464180 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAAAGTTCATCCCTAGCCTAA
*
14464206 GCATACAAAGTTCATTCCTAGCCTAA
1 GCATACAAAGTTCATCCCTAGCCTAA
14464232 G
1 G
14464233 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCTAGCCTAA
Found at i:14465361 original size:26 final size:26
Alignment explanation
Indices: 14465325--14465375 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14465315 TGACTTAGGA
* *
14465325 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAATCTAAGC
*
14465351 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
14465376 ATCGGACTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGC
Found at i:14465823 original size:158 final size:159
Alignment explanation
Indices: 14465436--14465851 Score: 435
Period size: 159 Copynumber: 2.6 Consensus size: 159
14465426 GACTGGGCTG
* * * * *
14465436 ATCCCCGGCTTACGAATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTCCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
14465501 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGA
66 GCTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGA
** *
14465566 CCGGTAACACGAAGAGGGGGACCAGGCCG
131 CCGACAACACGAAGAGGGGGACCAGGCCA
* * * * ** * * * * *
14465595 ATCCCCGACTTGTGCATTTTGCCTCTCCGGTCGGTTCAGCGCCCGTATGCTTGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* ** *
14465660 ACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG-ATCGGACC-AGACCGAGGGTTGTGGCAGCA
66 GCTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCCCCAG-CCGA-ACCGAGGGTTGTGGCAGCA
** * * *
14465722 GGATTGACAACATGCAG-GGGGGACCAGGTCA
128 GGACCGACAACACGAAGAGGGGGACCAGGCCA
* * * * *
14465753 ATCCCCGGCTTGCGCGTTCCACCTCTTCGACCGGCTGGGTGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
14465818 GCTTAGGCGTACGGAGTTCATTCCATGTCTAAGC
66 GCTTAGGCATACGGAGTTCATCCCATGTCTAAGC
14465852 ATACGGAGTT
Statistics
Matches: 202, Mismatches: 50, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 90 0.45
159 106 0.52
160 3 0.01
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.23
Consensus pattern (159 bp):
ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGA
CCGACAACACGAAGAGGGGGACCAGGCCA
Found at i:14465863 original size:26 final size:25
Alignment explanation
Indices: 14465827--14465902 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 25
14465817 GGCTTAGGCG
14465827 TACGGAGTTCATTCCATGTCTAAGCA
1 TACGGAGTTCATTCCA-GTCTAAGCA
14465853 TACGGAGTTCATTCCACGTCTAAGCA
1 TACGGAGTTCATTCCA-GTCTAAGCA
*
14465879 TACGGAGTCCATTCCCAGTCTAAG
1 TACGGAGTTCATT-CCAGTCTAAG
14465903 ATTTTGAGCC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (25 bp):
TACGGAGTTCATTCCAGTCTAAGCA
Found at i:14467470 original size:26 final size:26
Alignment explanation
Indices: 14467440--14467492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14467430 GTTGACATAG
*
14467440 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
14467466 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14467492 G
1 G
14467493 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14467945 original size:158 final size:159
Alignment explanation
Indices: 14467667--14467958 Score: 356
Period size: 158 Copynumber: 1.8 Consensus size: 159
14467657 CTGAACCAAG
* * * * ***
14467667 GGTTGTGGCAGCAAGACCGATATCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTACGCATTAT
1 GGTTATGGCAGCAAGACCGATAGCACGCAGAGGGGCATCAGGCCGATCCCCAACTTACGCATTAT
* * * * *
14467732 GCCTCTTCGGCCAGCTCAGTGCCTGCACTCTCATTTCGTGGGTTGACTTATGCATACGGAGTTTA
66 ACCTCTTCGGCCAGCTCAGCGCCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
14467797 TTCCCAGTCTATGATCAGACCAGACTGAA
131 TTCCCAGTCTATGATCAGACCAGACTGAA
* * * *
14467826 GGTTATGGCAGTAAGATCGATAGCACGCAG-GGGGCATCAGGCCGATCCCCAACTTGCGCATTCT
1 GGTTATGGCAGCAAGACCGATAGCACGCAGAGGGGCATCAGGCCGATCCCCAACTTACGCATTAT
* * * * *
14467890 ACCTCTTTGGCC-GACTGAGCGCCCGCACGT-TCGTTTCGTGGGTTGGCTTAGGCATATGGAGTT
66 ACCTCTTCGGCCAG-CTCAGCGCCCGCAC-TCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
14467953 CATTCC
129 CATTCC
14467959 ATGTCTAAGT
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 82 0.75
159 27 0.25
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.26
Consensus pattern (159 bp):
GGTTATGGCAGCAAGACCGATAGCACGCAGAGGGGCATCAGGCCGATCCCCAACTTACGCATTAT
ACCTCTTCGGCCAGCTCAGCGCCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTATGATCAGACCAGACTGAA
Found at i:14467965 original size:158 final size:157
Alignment explanation
Indices: 14467523--14467967 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 157
14467513 GCGACAACAG
* * * * * **
14467523 GATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCTGACCGGT
1 GATCGATAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTTGGCCGAC
* ** * * *
14467588 TGAGCGCTCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCGCCCGCAC-TTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAC
* *
14467653 CTAGCTGAACCAAGGGTTGTGGCAGCAA
130 CTAGCAGAACCAAGGGTTATGGCAGCAA
* * * *
14467681 GACCGATATCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCGGCC-A
1 GATCGATAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTTGGCCGA
* * * * * * * *
14467745 GCTCAGTGCCTGCACTCTCATTTCGTGGGTTGACTTATGCATACGGAGTTTATTCCCA-GTCTAT
65 -CTGAGCGCCCGCACT-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* * *
14467809 GATC-AGACCAG-ACTGAA-GGTTATGGCAGTAA
127 GACCTAG--CAGAAC-CAAGGGTTATGGCAGCAA
* * *** * *
14467840 GATCGATAGCACGCAGGGGGCATCAGGCCGATCCCCAACTTGCGCATTCTACCTCTTTGGCCGAC
1 GATCGATAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTTGGCCGAC
*
14467905 TGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
66 TGAGCGCCCGCAC-TTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
14467968 TATATGGAGT
Statistics
Matches: 227, Mismatches: 50, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 101 0.44
159 116 0.51
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
GATCGATAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTTTGGCCGAC
TGAGCGCCCGCACTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACC
TAGCAGAACCAAGGGTTATGGCAGCAA
Found at i:14467979 original size:26 final size:26
Alignment explanation
Indices: 14467943--14467993 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14467933 TGGCTTAGGC
14467943 ATATGGAGTTCATT-CCATGTCTAAGT
1 ATATGGAGTTCATTCCCA-GTCTAAGT
14467969 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
14467994 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGT
Found at i:14474570 original size:26 final size:26
Alignment explanation
Indices: 14474540--14474592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14474530 GTTGACTTAG
14474540 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
14474566 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
14474592 G
1 G
14474593 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:14475038 original size:158 final size:156
Alignment explanation
Indices: 14474566--14475065 Score: 471
Period size: 158 Copynumber: 3.2 Consensus size: 156
14474556 CCCAGTCTAA
* * *
14474566 GCATATGGAGTTCATTCC-TAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAAGATCAGC
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATC-G-
* * * * * *
14474630 AA-CACGTAGGGGGA-CAAGGCCAATCCTCG-CTTGCGTATTCTACCTCTCTGACCGG-TCGAGC
63 AAGCACGCAGGGGGATC-GGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCT-GAGC
* * **
14474691 GCCCGCCCATTCGTTTCGTGGGTTGGCTTAG
126 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
14474722 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCACCTGGACCAAGGGTTGTGGCAGTAGGACCGGC
1 GCATATGGAGTTCATTCCATGTCTAAGATCGAACC-GGACCGAGGGTTGCGGCAGTAGGATC-GA
** * * * * *
14474786 AGCATACAAAGGGGGATCGGGCTGATCC-CTGAGTTGCGCATTATGGCTCTCCGACCGGCTCAGC
64 AGC--ACGCAGGGGGATCGGGCCGATCCTC-GACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
14474850 -ACTCGCACGCTCGTTTCGTGGGTTGACTTAG
126 GCCT-GCACGCTCGTTTCGTGGGTTGGCTTAG
* *
14474881 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGA-
* *
14474945 AGCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCC-AGTCGGCTGAGCG
64 AGCACGCA-GGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCG
14475009 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
14475039 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
14475066 CATACGGAGT
Statistics
Matches: 274, Mismatches: 52, Indels: 34
0.76 0.14 0.09
Matches are distributed among these distances:
155 5 0.02
156 46 0.17
157 9 0.03
158 109 0.40
159 97 0.35
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGAAG
CACGCAGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14475076 original size:26 final size:26
Alignment explanation
Indices: 14475039--14475091 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14475029 GTTGGCTTAG
14475039 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
14475065 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14475091 G
1 G
14475092 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14475217 original size:185 final size:184
Alignment explanation
Indices: 14474881--14475251 Score: 562
Period size: 185 Copynumber: 2.0 Consensus size: 184
14474871 GTTGACTTAG
* * * *
14474881 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAGGATCGACA
* * * *
14474946 GCACGCAGGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCCAGCCGGCTGAGCGCC
* *
14475011 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
* * *
14475065 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGTGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAGGATCGACA
* * *
14475130 GCACGCAGGGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
66 GCACGCAGGG-GGGACCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCCAGCCGGCTGAGCGC
* * *
14475195 CCGTATGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
14475250 GC
1 GC
14475252 CCTAGTCTGA
Statistics
Matches: 167, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
184 68 0.41
185 99 0.59
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCCAGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
Found at i:14476216 original size:26 final size:26
Alignment explanation
Indices: 14476187--14476239 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14476177 GTTGACTTAG
14476187 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14476213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14476239 G
1 G
14476240 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14482729 original size:159 final size:157
Alignment explanation
Indices: 14482559--14482939 Score: 374
Period size: 157 Copynumber: 2.4 Consensus size: 157
14482549 CCCACACACC
* *
14482559 CGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGGGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * * *
14482624 GTGTGGCAGCGGGATCGACAGCACACAAAGGGAGA-TCAGGCCGATCCCCAGCTTGTGCATTATG
66 GTGCGACAGCAGGATCGACAGCACAC--AGGGAGACT-AGGCCGATCCCCAGCTTGCGCATTATG
*
14482688 CCTCTCCGACAGGCTCAGCGCCCGAACGCTT
128 CCTCTCCGACAGGCTCAGCACCCGAACG-TT
* * ** * * * *
14482719 -GTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCC-TAGTCTAA-CATCGAACCAGACCGAG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC-CCCAGCCGGACCGAG
* * * ** * * ** * *
14482781 TGTTGCGATAGCAGGATCGACAGCATGCAGGGGGACTGGGTTGATCCCCGGCTTGCGCATTCTGC
64 GGGTGCGACAGCAGGATCGACAGCACACAGGGAGACTAGGCCGATCCCCAGCTTGCGCATTATGC
* * * *
14482846 CTCTCCGACCGGTTGAGCACCCGCACGTT
129 CTCTCCGACAGGCTCAGCACCCGAACGTT
* * * *
14482875 CATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGATCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
14482940 TTATGGCAAC
Statistics
Matches: 172, Mismatches: 43, Indels: 15
0.75 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 97 0.56
158 5 0.03
159 68 0.40
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
GTGCGACAGCAGGATCGACAGCACACAGGGAGACTAGGCCGATCCCCAGCTTGCGCATTATGCCT
CTCCGACAGGCTCAGCACCCGAACGTT
Found at i:14482953 original size:157 final size:157
Alignment explanation
Indices: 14482457--14482960 Score: 430
Period size: 159 Copynumber: 3.2 Consensus size: 157
14482447 GATCAGACCA
* * * * * *
14482457 GACCAAGGGTTGTGGCAGTAGGAT-TAGCAGCACACAGGGGGGA-CCGGACCGATCCCCGGCTTG
1 GACCGAGGGTTGTGGCAGCAGGATCGA-CAGCACACAAGGGAGATCAGG-CCGATCCCCGGCTTG
** * * ***
14482520 CGCATTCTGCCTCTCCGATTGGTTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAC
64 CGCATTCTGCCTCTCCGACAGGTTGAGCGCCCGCACGTTCGTTTCATGGGTT-GCTTAGGCATAC
* *
14482585 GGAGCTCATTCCATGTCTAAGCCCCAGCCG
128 GGAGTTCATTCCATGTCTAAGCCCCAGACG
* * * * *
14482615 GACCGGGGGGTGTGGCAGCGGGATCGACAGCACACAAAGGGAGATCAGGCCGATCCCCAGCTTGT
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC-AAGGGAGATCAGGCCGATCCCCGGCTTGC
* * * * *
14482680 GCATTATGCCTCTCCGACAGGCTCAGCGCCCGAACGCTT-GTTTCGTGGGTTGACTTAGGCATAC
65 GCATTCTGCCTCTCCGACAGGTTGAGCGCCCGCACG-TTCGTTTCATGGGTTG-CTTAGGCATAC
** ** *
14482744 AAAGTTCATTCC-TAGTCTAA-CATC-GAACCA
128 GGAGTTCATTCCAT-GTCTAAGCCCCAG-A-CG
* * ** ** * * **
14482774 GACCGAGTGTTGCGATAGCAGGATCGACAGCATGC-AGGGGGA-CTGGGTTGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAGGGAGATC-AGGCCGATCCCCGGCTTGC
* * *
14482837 GCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGTTCATTTCATGGGTTAGCTTAGGCATACG
65 GCATTCTGCCTCTCCGACAGGTTGAGCGCCCGCACGTTCGTTTCATGGGTT-GCTTAGGCATACG
14482902 GAGTTCATTCCATGTCTAAGCCCCAGACG
129 GAGTTCATTCCATGTCTAAGCCCCAGACG
* * * *
14482931 GATCGAGGGTTATGGCAACAGGACCGACAG
1 GACCGAGGGTTGTGGCAGCAGGATCGACAG
14482961 TGGGATCGAC
Statistics
Matches: 266, Mismatches: 66, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 111 0.42
158 36 0.14
159 113 0.42
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (157 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAGGGAGATCAGGCCGATCCCCGGCTTGCG
CATTCTGCCTCTCCGACAGGTTGAGCGCCCGCACGTTCGTTTCATGGGTTGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGACG
Found at i:14483094 original size:26 final size:26
Alignment explanation
Indices: 14483065--14483114 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14483055 GTTGACTTAG
14483065 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14483091 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
14483115 GAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14483422 original size:159 final size:159
Alignment explanation
Indices: 14483231--14483633 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 159
14483221 CGTACGCTTG
*
14483231 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTT
* * *
14483296 GTGGCAGCGGGACCGATAGCACGCAGGGGGGGATCGAGCCAATCCCCGGCTTCTGCATTATGCCT
66 GTGGCAGCAGGACCGATAGCACGCAGGGGGGGACCGAGCCAATCCCCGACTTCTGCATTATGCCT
* * *
14483361 CTCCGATCGGCTCAGTGCCTGA-ATGCTCA
131 CTCCGATCGGCTCAGCGCC-CACACGCTCA
* * * * * ** * *
14483390 TTTCATGGGTTGACTTAGACATACGGATTTCATTCCCA-ATCTAAG-ATCGGACTGGACCG-AGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTC-GGACCGAAG-
* ** * * * *** * *
14483452 GTTGCGGCAGCACTATCGACAGCACGCAGGGGGGGACCGGGCTGGTCCCCGACTTGTGCATTCTG
63 GTTGTGGCAGCAGGACCGATAGCACGCAGGGGGGGACCGAGCCAATCCCCGACTTCTGCATTATG
* * * *
14483517 CCTCTCCGGTTGGCTGAGCGCCCACACGCTCG
128 CCTCTCCGATCGGCTCAGCGCCCACACGCTCA
* * * * * *
14483549 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTTTAAGCCCTAGTCGAACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTT
*
14483614 GTGGCAGCAGGACCGGTAGC
66 GTGGCAGCAGGACCGATAGC
14483634 GAGATCGACA
Statistics
Matches: 185, Mismatches: 52, Indels: 14
0.74 0.21 0.06
Matches are distributed among these distances:
158 8 0.04
159 171 0.92
160 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTT
GTGGCAGCAGGACCGATAGCACGCAGGGGGGGACCGAGCCAATCCCCGACTTCTGCATTATGCCT
CTCCGATCGGCTCAGCGCCCACACGCTCA
Found at i:14483717 original size:26 final size:26
Alignment explanation
Indices: 14483688--14483738 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14483678 GTTGACTTAG
14483688 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
14483714 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
14483739 TGATCGTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14484525 original size:158 final size:159
Alignment explanation
Indices: 14484183--14484535 Score: 405
Period size: 158 Copynumber: 2.2 Consensus size: 159
14484173 TGCCAGTAGC
* * **
14484183 CATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTTGATGTCTAAGTCCCAACCGGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGTCCCAACCGGACCGAGGG
** * * * * * *
14484248 TAGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCGTATTCTGC
66 TAGTGGCACAGGCACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACGCATTATGC
* * * *
14484313 CTCTCCAGTCGGCTAAGCGCCCGTACGCT
131 CTCTCCAGCCGACTAAGCGACCGAACGCT
*
14484342 CGTTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGTCCCAACCGGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGTCCCAACCGGACCGAGGG
* *
14484407 TTA-TGGCAACAGGCA-GGA-AGCACGCAGAGGGGGA-CTGGGTCGATCCCCGACTTATGCATTA
66 -TAGTGGC-ACAGGCACCGACAGCACGCAGAGGGGGATC-GGGTCGATCCCCGACTTACGCATTA
*
14484468 TGCCTCTCC-GACCGACTCAA-TGACCGAACGCT
128 TGCCTCTCCAG-CCGACT-AAGCGACCGAACGCT
* *
14484500 CATTTTGTGGGTTGACTTAGGCATAC-GAAGTTCATT
1 CATTTCGTGGGTTGGCTTAGGCATACGGAA-TTCATT
14484536 TTGTGCGCAC
Statistics
Matches: 165, Mismatches: 23, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
157 5 0.03
158 86 0.52
159 68 0.41
160 6 0.04
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (159 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGTCCCAACCGGACCGAGGG
TAGTGGCACAGGCACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACGCATTATGC
CTCTCCAGCCGACTAAGCGACCGAACGCT
Found at i:14485096 original size:26 final size:26
Alignment explanation
Indices: 14485067--14485119 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14485057 GTTGACTTAG
14485067 GCATACGG-AGTTCATCCCCAGTCTAA
1 GCATACGGTA-TTCATCCCCAGTCTAA
* *
14485093 GCATATGGTATTCATTCCCAGTCTAA
1 GCATACGGTATTCATCCCCAGTCTAA
14485119 G
1 G
14485120 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGTATTCATCCCCAGTCTAA
Found at i:14485459 original size:26 final size:26
Alignment explanation
Indices: 14485407--14485462 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14485397 TGGGTTGGCT
*
14485407 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATCCCATGTC
14485433 TAAGCATACGGAGTTCATACCCA-GTC
1 TAAGCATACGGAGTTCAT-CCCATGTC
14485459 TAAG
1 TAAG
14485463 AGTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCATGTC
Found at i:14486426 original size:26 final size:26
Alignment explanation
Indices: 14486396--14486448 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14486386 GTTGGCTTAG
14486396 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
14486422 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14486448 G
1 G
14486449 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:14487159 original size:26 final size:26
Alignment explanation
Indices: 14487119--14487171 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14487109 GTTGACTTAG
14487119 GCATACAGAGCTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
* * * *
14487145 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
14487171 G
1 G
14487172 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:14487332 original size:26 final size:26
Alignment explanation
Indices: 14487303--14487355 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14487293 GTTGGCTTAG
* *
14487303 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14487329 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14487355 G
1 G
14487356 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14487354 original size:184 final size:186
Alignment explanation
Indices: 14487045--14487721 Score: 648
Period size: 197 Copynumber: 3.5 Consensus size: 186
14487035 TACCACCCGT
* * * ** * *
14487045 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGTCCGCACGCTCATTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *
14487110 TTGACTTAGGCATACAGAGCTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
66 TTGGCTTAGGCATAC-GAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
* **
14487174 TAGACCAGACCAAGGGTTGC-GGTA-A-T-AGGATCGACAGCACGTAGGGGGGATCGGG
129 CAGACCAGACCAAGGGTTGCAGG-ACAGTAAGGATCGACAGCACACAGGGGGGATCGGG
* * **
14487229 TCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACTTTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
*
14487294 TTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
66 TTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * *
14487359 AGACCAGATCGAGGGTTACAACAGCAGGACCAGTAGCAGGATTGGCAGCACACAGGGGGGATCGG
130 AGACCAGACCAAGGGTT------GCAGGA-CAGTA--AGGATCGACAGCACACAGGGGGGATCGG
14487424 G
186 G
* * * * * *
14487425 CCGATCCTCGGTTTGCACATTCTACCTCTCC-AGCCGGTTAAGCGCCTGCACGCTCGTTTCGTGG
1 TCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGTTGAGCGCCCGCACGCTCGTTTCGT-G
*
14487489 GGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
64 GGTTGGCTTAGGCATACGA-GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * * * *
14487554 TCAGACCAAACCAAGGGTTGCAACAGCAGGACCAGCACCAGGATTGGCAGCACGCAGGGGGGATC
128 TCAGACCAGACCAAGGGTT------GCAGGA-CAGTA--AGGATCGACAGCACACAGGGGGGATC
*
14487619 GAG
184 GGG
* * ** * * * * *
14487622 CCGATCCTCGATTTGCACATTCTGCCTCTCC-AGCCGGCTGAGCGCCTGCACGCTCGTTTCATGG
1 TCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGTTGAGCGCCCGCACGCTCGTTTCGTGG
14487686 GTTGGCTTAGGCATACGATGTTCATTCCATGTCTAA
65 GTTGGCTTAGGCATACGA-GTTCATTCCATGTCTAA
14487722 ACCCCAGCCG
Statistics
Matches: 426, Mismatches: 50, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
183 3 0.01
184 122 0.29
190 3 0.01
191 2 0.00
192 1 0.00
193 1 0.00
195 1 0.00
196 115 0.27
197 178 0.42
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (186 bp):
TCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCAAGGGTTGCAGGACAGTAAGGATCGACAGCACACAGGGGGGATCGGG
Found at i:14487538 original size:26 final size:26
Alignment explanation
Indices: 14487500--14487552 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14487490 GTTGGCTTAG
* *
14487500 GCATACGATGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
14487526 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
14487552 G
1 G
14487553 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:14487550 original size:197 final size:196
Alignment explanation
Indices: 14487216--14487721 Score: 764
Period size: 197 Copynumber: 2.6 Consensus size: 196
14487206 GACAGCACGT
* * * ** *
14487216 AGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCC-GACCGGCTGAGCGCCCGCAC
1 AGGGGGGATCGGGCCGATCCTCGGTTTGCACATTCTACCTCTCCAG-CCGGCTGAGCGCCTGCAC
** * *
14487280 TTTCGTTTCGTGGGTTGGCTTAGGCATACGGA-GTTTATTCCATGTCTAAGCATACAGAGTTCAT
65 GCTCGTTTCGTGGGTTGGCTTAGGCATAC-GATGTTCATTCCATGTCTAAGCATACAAAGTTCAT
* * * * *
14487344 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAACAGCAGGACCAGTAGCAGGATTGGCAGCA
129 TCCCAGTCTAAGATCAGACCAAACCAAGGGTTACAACAGCAGGACCAGCACCAGGATTGGCAGCA
14487409 CAC
194 CAC
* *
14487412 AGGGGGGATCGGGCCGATCCTCGGTTTGCACATTCTACCTCTCCAGCCGGTTAAGCGCCTGCACG
1 AGGGGGGATCGGGCCGATCCTCGGTTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCTGCACG
14487477 CTCGTTTCGTGGGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAAGCATACAAAGTTCATT
66 CTCGTTTCGT-GGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAAGCATACAAAGTTCATT
*
14487542 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAACAGCAGGACCAGCACCAGGATTGGCAGCAC
130 CCCAGTCTAAGATCAGACCAAACCAAGGGTTACAACAGCAGGACCAGCACCAGGATTGGCAGCAC
*
14487607 GC
195 AC
* * *
14487609 AGGGGGGATCGAGCCGATCCTCGATTTGCACATTCTGCCTCTCCAGCCGGCTGAGCGCCTGCACG
1 AGGGGGGATCGGGCCGATCCTCGGTTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCTGCACG
*
14487674 CTCGTTTCATGGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAA
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAA
14487722 ACCCCAGCCG
Statistics
Matches: 282, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
196 103 0.37
197 179 0.63
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
AGGGGGGATCGGGCCGATCCTCGGTTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCTGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAAGCATACAAAGTTCATTC
CCAGTCTAAGATCAGACCAAACCAAGGGTTACAACAGCAGGACCAGCACCAGGATTGGCAGCACA
C
Found at i:14487897 original size:26 final size:26
Alignment explanation
Indices: 14487867--14487919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14487857 GTTGACCTAG
*
14487867 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14487893 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14487919 G
1 G
14487920 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14487958 original size:21 final size:21
Alignment explanation
Indices: 14487932--14487973 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14487922 CAGATCGGAT
*
14487932 CGAGGGTTGTGGTAGCAGGAC
1 CGAGGGTTGTGGCAGCAGGAC
*
14487953 CGAGGGTTGTGGCAGCGGGAC
1 CGAGGGTTGTGGCAGCAGGAC
14487974 TGACAACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (21 bp):
CGAGGGTTGTGGCAGCAGGAC
Found at i:14488474 original size:26 final size:26
Alignment explanation
Indices: 14488438--14488490 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14488428 GTTGACTTAG
14488438 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14488464 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14488490 G
1 G
14488491 ATCTAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14490210 original size:26 final size:26
Alignment explanation
Indices: 14490173--14490225 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14490163 GTTGACTTAG
*
14490173 GCATACGAAGTTTA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
14490199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14490225 G
1 G
14490226 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14490717 original size:26 final size:26
Alignment explanation
Indices: 14490687--14490739 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14490677 GTTGACTTAG
14490687 GCATACAGAGTTCA-TCCGTAGTCTAA
1 GCATACAGAGTTCATTCC-TAGTCTAA
*
14490713 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
14490739 G
1 G
14490740 ATCGCACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:14491055 original size:514 final size:514
Alignment explanation
Indices: 14490083--14491055 Score: 1203
Period size: 514 Copynumber: 1.9 Consensus size: 514
14490073 GAGAGGGATC
* * ** *
14490083 GGGCTGATCCCCGACTTGCACATTATACCCCTCCGACTGACCTCTCTGGCTGGTTGTGTGCCCTC
1 GGGCCGATCCCCGACTTGCACATTATACCCCTCCGACTGACCTCTCTGGCTGGTTGAGCACCCAC
*
14490148 ACGCACATTTCATGGGTTGACTTAGGCATACGAAGTTTATCCCTAGTCTAAGCATACGGAGTTCA
66 ACGCACATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCA
* * * * * *
14490213 TTCCCAGTCTAAGATCAGACCGGATCGAGCGTTGCGATAGTAGGATCGATAGCACGCAGGGGGAC
131 TTCCCAGTCTAAGATCAGACAGGACCGAGCGTTGCGACAGCAGCATCGAAAGCACGCAGGGGGAC
** * ** **
14490278 CGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTGCAGCCGACTAAGCGCCCGCACATCCATTTCA
196 CGGGCCAATCCACAACTTGCACATTCTGCCTCTGCAGCCGACTAAGCGCCCGCACATCCATTTCA
* * *
14490343 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGT
261 TGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCCAGGGTTATGGC
* * * **** * *
14490408 AGTGGGACTGGTAGCTTGTAGAAGGGGACCGAGCTGATCCCCTACTTACGCATTATGCCTCTTCG
326 AGCGGGACCGGCAAAACGTAGAAGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCCG
* * ** *
14490473 GTCGGCTCAGCACTCGAACGCTCGTTTCATGGGTTGACTTTGGCATACAGAGTTCATTCACAGTC
391 GTCGGCTAAGCACCCGAACGCTCGTTTCATCAGTTGACTTAGGCATACAGAGTTCATTCACAGTC
14490538 TAAGATCGGATTGGATCGAGGGTTACAATAGCAGGATCGACAGCATGCAGGGAGGTACT
456 TAAGATCGGATTGGATCGAGGGTTACAATAGCAGGATCGACAGCATGCAGGGAGGTACT
* * * * *
14490597 GGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCTGGCCTCT-TCGG-TCGGTTGAGCACCC
1 GGGCCGATCCCCGACTTGCACATTATACCCCTCCGACTGACCTCTCT-GGCT-GGTTGAGCACCC
* * *
14490660 ACACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATCCGTAGTCTAAGCATACGGAGT
64 ACACGCACATTTCATGGGTTGACTTAGGCATACGA-AGTTCATCCCTAGTCTAAGCATACGGAGT
* * * *
14490724 TCATTCCTAGTCTAAGATC-GCACAGGACCGAGGGTTGTGGCAGCAGCATCGAAAGCACGCAGGG
128 TCATTCCCAGTCTAAGATCAG-ACAGGACCGAGCGTTGCGACAGCAGCATCGAAAGCACGCA-GG
* * * * *
14490788 GGGACCGGGCCAATCCACAACTTGCACATTCTGCCTCT-CTGGCCGACTGAGCG-CCGTACGTCT
191 GGGACCGGGCCAATCCACAACTTGCACATTCTGCCTCTGC-AGCCGACTAAGCGCCCGCACATCC
*
14490851 ATTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCCAGGG
255 ATTTCATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCCAGGG
* * * * * *
14490915 TTGTGGCAGCGGGACCGGCAAAACGTA-AAGGGGGATCG-GGTCGATCCTCGACTTGCGCATTCT
319 TTATGGCAGCGGGACCGGCAAAACGTAGAA-GGGGACCGAGCT-GATCCCCGACTTACGCATTAT
* * *
14490978 GCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCATCAGTTGGCTTAGGCATAC-GAAGTTC
382 GCCTCTCCGGTCGGCTAAGCACCCGAACGCTCGTTTCATCAGTTGACTTAGGCATACAG-AGTTC
14491042 ATTC-CATGTCTAAG
446 ATTCACA-GTCTAAG
14491056 CATACGGAGT
Statistics
Matches: 385, Mismatches: 63, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
513 12 0.03
514 329 0.85
515 44 0.11
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (514 bp):
GGGCCGATCCCCGACTTGCACATTATACCCCTCCGACTGACCTCTCTGGCTGGTTGAGCACCCAC
ACGCACATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACAGGACCGAGCGTTGCGACAGCAGCATCGAAAGCACGCAGGGGGAC
CGGGCCAATCCACAACTTGCACATTCTGCCTCTGCAGCCGACTAAGCGCCCGCACATCCATTTCA
TGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCCAGGGTTATGGC
AGCGGGACCGGCAAAACGTAGAAGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCCG
GTCGGCTAAGCACCCGAACGCTCGTTTCATCAGTTGACTTAGGCATACAGAGTTCATTCACAGTC
TAAGATCGGATTGGATCGAGGGTTACAATAGCAGGATCGACAGCATGCAGGGAGGTACT
Found at i:14491059 original size:26 final size:26
Alignment explanation
Indices: 14491029--14491081 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14491019 GTTGGCTTAG
14491029 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
14491055 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14491081 G
1 G
14491082 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14491878 original size:26 final size:26
Alignment explanation
Indices: 14491842--14491894 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14491832 GTTGGCTTAG
14491842 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14491868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14491894 G
1 G
14491895 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14492082 original size:26 final size:26
Alignment explanation
Indices: 14492052--14492104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14492042 GTTGACTTAG
14492052 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
14492078 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14492104 G
1 G
14492105 AGCAGAACGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14492763 original size:26 final size:26
Alignment explanation
Indices: 14492727--14492779 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14492717 GTTGACTTAG
14492727 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14492753 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14492779 G
1 G
14492780 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14493056 original size:159 final size:160
Alignment explanation
Indices: 14492853--14493257 Score: 431
Period size: 159 Copynumber: 2.5 Consensus size: 160
14492843 CCCGGCTTGT
* * * * *
14492853 GCATTCTACCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATG
1 GCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
14492918 GAGTTCATTCCATGTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGC-GAAATTGATAGCACA
66 GAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAG-AATGGACAGCACA
* * * *
14492981 TAGAGGGGGATCGAGCCAATCCCCGACTTGC
130 CAGAGGGAGACCGAGCCAATCCCCGACTTAC
* * * * * *
14493012 GCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
1 GCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * * * *
14493077 GAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACTGAGGGTTGTGGTAGCAGGATGGACAGCACG
66 GAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAGAATGGACAGCACA
* * * * *
14493140 CAGAGGGAGACCGGGTCGATCCTCGGCTTAC
130 CAGAGGGAGACCGAGCCAATCCCCGACTTAC
* * * * * * * *
14493171 GCATTCTACCTCTTCGGCCGGTTGAACGCCTGCACACTCGTTTCGTGGGTTGGCTTTGGCATACG
1 GCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
14493236 GAGTTCATTCCATGTCTAAGCA
66 GAGTTCATTCCATGTCTAAGCA
14493258 TACAGAGTTC
Statistics
Matches: 198, Mismatches: 43, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
158 5 0.03
159 188 0.95
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (160 bp):
GCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGTGGCAGCAGAATGGACAGCACAC
AGAGGGAGACCGAGCCAATCCCCGACTTAC
Done.