Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 110 of 402
Found at i:14493265 original size:26 final size:26
Alignment explanation
Indices: 14493229--14493281 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14493219 GTTGGCTTTG
*
14493229 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14493255 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14493281 G
1 G
14493282 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14494125 original size:26 final size:26
Alignment explanation
Indices: 14494095--14494147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14494085 GTTGACTGAG
14494095 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14494121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14494147 G
1 G
14494148 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14494476 original size:26 final size:25
Alignment explanation
Indices: 14494447--14494498 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
14494437 GGCATACGGG
14494447 GTTCATT-CCATGTCTAAGCATGTTGA
1 GTTCATTCCCA-GTCTAAG-ATGTTGA
*
14494473 GTTCATTCCCAGTCTAAGATTTTGA
1 GTTCATTCCCAGTCTAAGATGTTGA
14494498 G
1 G
14494499 CCACGGTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 14 0.58
27 3 0.12
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (25 bp):
GTTCATTCCCAGTCTAAGATGTTGA
Found at i:14495263 original size:170 final size:173
Alignment explanation
Indices: 14494963--14495365 Score: 474
Period size: 170 Copynumber: 2.3 Consensus size: 173
14494953 CCGAGGGTTA
* * * * *
14494963 CGACAGCAGGATCGACAGCACGCAGGTGGGGATCGGGCTAATCCCCTGCTTGCGCATTCTGCCTC
1 CGACAGCAGGATCGACAGCACGTAGG-GGGGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTC
* * * * *
14495028 TTCGGCTAGCTGAGTGCCCGCACGCATGCACGTTTCCTGGGTTGGCTTTGGCATACGGAGTTCAT
65 TCCGGCCAGCTGAGCGCCCGCACGAATGCAC-TTTCCTGGGTTGGCTTAGGCATACGGAGTTCAT
* ** * *
14495093 TCCCA-GTCTAAGATCGGACCGGATCGAGGGTTGCGATAGCAGGAC
129 T-CCATGTCTAAGACCCAACCGGATCAAGGGTTGCGACAGCAGGAC
*
14495138 C-AGCAGCAGGATCGACAGCACGTAGGGGGGATCGAGCTGATCCTCGGCTTGCGCATTCTACCTC
1 CGA-CAGCAGGATCGACAGCACGTAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTC
* **
14495202 TCCGGCCAGCTGAGCGCCTGCAC-AAT-CA-TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT
65 TCCGGCCAGCTGAGCGCCCGCACGAATGCACTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
14495264 CCATGTCTAAGCCCCAACCGGATCAAGGGTTGTGGCAGCAGGAT
130 CCATGTCTAAGACCCAACCGGATCAAGGGTTGCGACAGCAGGAC
* * * * *
14495308 CGACAGCGGGATCGACAGCACGTAGAAGGGGACCGAGCTGATCCCCGACTTACGCATT
1 CGACAGCAGGATCGACAGCACGTAG-GGGGGATCGAGCTGATCCCCGGCTTGCGCATT
14495366 ATGCCTCTTC
Statistics
Matches: 195, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
169 3 0.02
170 84 0.43
171 28 0.14
172 2 0.01
173 2 0.01
174 53 0.27
175 23 0.12
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (173 bp):
CGACAGCAGGATCGACAGCACGTAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTCT
CCGGCCAGCTGAGCGCCCGCACGAATGCACTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGACCCAACCGGATCAAGGGTTGCGACAGCAGGAC
Found at i:14495468 original size:26 final size:26
Alignment explanation
Indices: 14495432--14495482 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14495422 GTTGACTTAG
14495432 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
14495458 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
14495483 GGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14495963 original size:26 final size:26
Alignment explanation
Indices: 14495933--14495985 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14495923 GTTGGCTTAG
14495933 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14495959 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14495985 G
1 G
14495986 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14496503 original size:158 final size:155
Alignment explanation
Indices: 14496228--14496801 Score: 519
Period size: 158 Copynumber: 3.6 Consensus size: 155
14496218 GGATCGGGCT
* * * *
14496228 GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGTGCCCTCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT
* * * * * * * *
14496293 GACTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCGCACTGGACT-GAGGGTTGCGACAGCAG
66 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAG--CCCAGTCGAATCGAGGGTTGTG-CAGCAG
14496357 GATCAACAGCACGTAGGGGGGACCTGGTC
128 GATCAACAGCACGTAGGGGGGACCTGG-C
* * * * * *
14496386 GATCCCCAGCTTGCGCATTCTGCCTCTCTAGCCGGCTAAGCGCCCGCACGCCCCTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT
** * * *
14496451 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTTGAATCGAGGGTTATGGCAGCGGG
66 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC-AGTCGAATCGAGGGTTGT-GCAGCAGG
* ** * *
14496516 ACCAGTAGCACGCAAAGGGGGA-CTGGGCC
129 ATCAACAGCACG-TAGGGGGGACCT-GG-C
* * * * *
14496545 GATCCTCGGCTTGCGCATTATACCTC-CTCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGT
1 GATCCCCGGCTTGCGCATTATGCCTCTCT-GGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGT
* ** ** * * * *
14496609 TGGCTTATGCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCAAGCGAGGGTTGTTGCAGTAG
65 TGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCAGTCGAATCGAGGGTTG-TGCAGCAG
* * * *
14496673 GATCGACAACACGTAGGGGAGACCAGGC
128 GATCAACAGCACGTAGGGGGGACCTGGC
* * * * * *
14496701 TGATCCCCGGCTTGCGCATTCTGCCTCT-TCGACCGGCTAAGCGCCCACATGCTTGTTTCGTGGG
1 -GATCCCCGGCTTGCGCATTATGCCTCTCT-GGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGG
14496765 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
64 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
14496802 ATACGAAGTT
Statistics
Matches: 330, Mismatches: 74, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
156 6 0.02
157 93 0.28
158 136 0.41
159 92 0.28
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (155 bp):
GATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGTCGAATCGAGGGTTGTGCAGCAGGAT
CAACAGCACGTAGGGGGGACCTGGC
Found at i:14496787 original size:316 final size:317
Alignment explanation
Indices: 14496205--14496801 Score: 787
Period size: 316 Copynumber: 1.9 Consensus size: 317
14496195 TGGCAACGAC
* * * * **
14496205 AGCACGCATAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGTG
1 AGCACGCAAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTCAGCA
* *
14496270 CCCTCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCGCACT
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCGCACA
* * * *
14496335 GGACTGAGGGTTGCGACAGCAGGATCAACAGCACGTAGGGGGGACCTGGTCGATCCCCAGCTTGC
131 AGACTGAGGGTTGCGACAGCAGGATCAACAACACGTAGGGGAGACCAGGTCGATCCCCAGCTTGC
* * **
14496400 GCATTCTGCCTCTCTAGCCGGCTAAGCGCCCGCACGCCCCTTTCGTGGGTTGGCTTAGGCATAGG
196 GCATTCTGCCTCTCGAGCCGGCTAAGCGCCCACACGCCCCTTTCGTGGGTTGGCTTAGGCATACA
14496465 GAGTTCATTCCATGTCTAAGCCCTAGTTGAATCGAGGGTTATGGCAGCGGGACCAGT
261 GAGTTCATTCCATGTCTAAGCCCTAGTTGAATCGAGGGTTATGGCAGCGGGACCAGT
* *
14496522 AGCACGCAAAGGGGGA-CTGGGCCGATCCTCGGCTTGCGCATTATACCTC-CTCGGTCGGCTCAG
1 AGCACGCAAAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTATACCTCTC-CGGCCGGCTCAG
* * *** *
14496585 CACCCGCACGCTCGTTTCATGGGTTGGCTTATGCATATGGAGTTCATTCCCAGTCTAAGATCAG-
64 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAAGTCTAAGATC-GC
* * * *
14496649 ACCAAG-C-GAGGGTTGTTG-CAGTAGGATCGACAACACGTAGGGGAGACCAGG-CTGATCCCCG
128 A-CAAGACTGAGGGTTG-CGACAGCAGGATCAACAACACGTAGGGGAGACCAGGTC-GATCCCCA
* ***
14496710 GCTTGCGCATTCTGCCTCTTCGA-CCGGCTAAGCGCCCACATGCTTGTTTCGTGGGTTGGCTTAG
190 GCTTGCGCATTCTGCCTC-TCGAGCCGGCTAAGCGCCCACACGCCCCTTTCGTGGGTTGGCTTAG
14496774 GCATACAGAGTTCATTCCATGTCTAAGC
254 GCATACAGAGTTCATTCCATGTCTAAGC
14496802 ATACGAAGTT
Statistics
Matches: 241, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
315 1 0.00
316 125 0.52
317 112 0.46
318 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (317 bp):
AGCACGCAAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTCAGCA
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAAGTCTAAGATCGCACA
AGACTGAGGGTTGCGACAGCAGGATCAACAACACGTAGGGGAGACCAGGTCGATCCCCAGCTTGC
GCATTCTGCCTCTCGAGCCGGCTAAGCGCCCACACGCCCCTTTCGTGGGTTGGCTTAGGCATACA
GAGTTCATTCCATGTCTAAGCCCTAGTTGAATCGAGGGTTATGGCAGCGGGACCAGT
Found at i:14496811 original size:26 final size:26
Alignment explanation
Indices: 14496774--14496826 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14496764 GTTGGCTTAG
14496774 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14496800 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
14496826 G
1 G
14496827 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14497476 original size:26 final size:26
Alignment explanation
Indices: 14497439--14497491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14497429 GTTGCCTTAG
*
14497439 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
14497465 GCATACAAAGTTGATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
14497491 G
1 G
14497492 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:14498349 original size:26 final size:26
Alignment explanation
Indices: 14498319--14498371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14498309 GTTGACTTAG
14498319 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14498345 GCATATGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14498371 G
1 G
14498372 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14498844 original size:158 final size:156
Alignment explanation
Indices: 14498345--14498844 Score: 529
Period size: 158 Copynumber: 3.2 Consensus size: 156
14498335 CCCAGTCTAA
* * * *
14498345 GCATATGGAGTTCATTCCGAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGTAGGATCGACA
1 GCATAGGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * ** *
14498410 GCACACAAGGGGGATCA-GGCTGATCCCCGGTTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 GCACGCAGGGGGGA-CAGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCG-CCGGCTGAGCGC
* * *
14498474 CTGCACACCCATTTCGTGGGTTGGCTTGG
128 CTGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * *
14498503 GCATAGGGAGTTCATTCCATGTGTAAG-CCCCAGCCAGACCGAGGGTTATGGCAGCGGGA-CTTA
1 GCATAGGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTACGGCAGCAGGATC-GA
* * * * * * *
14498566 CAGCACGTAGAGGGGGACCGGGTCGATCCCTGACTTGTGCATTATGCCTCTTCGGCCGGCTCAGC
63 CAGCACGCAG-GGGGGACAGGGCCGATCCCTGACTTGCGCATTCTGCCTC-TCCGCCGGCTGAGC
* * *
14498631 TCCTGCACGCTCATTTCGTGGGTTGACTTAT
126 GCCTGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
14498662 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATAGGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * *
14498727 GCACGCAGGGGGGACAGGGCCGATCCCTGACTTGCGCAATCTACCTCTCCAGCTGGCTGAGCGCC
65 GCACGCAGGGGGGACAGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCC-GCCGGCTGAGCGCC
*
14498792 TGCACGCTCGTTTCGTGGGTTGGCTTAG
129 TGCACGCTCATTTCGTGGGTTGGCTTAG
14498820 GCATAGGGAGTTCATTCCATGTCTA
1 GCATAGGGAGTTCATTCCA-GTCTA
14498845 CGCATACCGA
Statistics
Matches: 273, Mismatches: 58, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 9 0.03
158 141 0.52
159 115 0.42
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATAGGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGACAG
CACGCAGGGGGGACAGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGCCGGCTGAGCGCCTG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:14499867 original size:158 final size:158
Alignment explanation
Indices: 14499568--14500066 Score: 484
Period size: 158 Copynumber: 3.2 Consensus size: 158
14499558 CCAGTCTAAT
* * * * * * * ***
14499568 CATACAGAGTTCATTCC-TAGTCTAAGATCTGATTAGATCGAGGGTTACGGCAGCAGGATCGGTA
1 CATACGGAGTTCATTCCAT-GTCTAAGACCAGATCAGACCGAGGGTTGCGACAGCAGGATCAACA
* * * * * * *
14499632 GCACGTAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCTGCCTGTCCAGCCAGCTGAGCCCC
65 GCACGTAGAGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
*
14499697 CGCACGCCCGTTTCATGGGTTGGCTTAGG
130 CGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * * * * *
14499726 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGA-CTAAC
1 CATACGGAGTTCATTCCATGTCTAAG-ACCAGATCAGACCGAGGGTTGCGACAGCAGGATC-AAC
* * * * * *
14499789 AGCACGTAGAGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTTCAGTCGGCTCAGCGC
64 AGCACGTAGAGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGC
* * *
14499854 CTGCACACTCGTTTCATGGGTTGACTTAGG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAGG
** * * * *
14499884 CATATAGAGTTCATTCCCA-ATCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATA
1 CATACGGAGTTCATT-CCATGTCTAAGACCAGATCAGACCGAGGGTTGCGACAGCAGGATCAACA
* * * * *
14499948 GCACGTAGAGGGGACTGGGTCGATCCCCAGTTTACGCATTCTGCCTCTCCAACCGACTGAGCGCC
65 GCACGTAGAGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
* * * *
14500013 CGCATGTTCATTTCATGGGTTGGCTTAGT
130 CGCACGCTCGTTTCATGGGTTGGCTTAGG
*
14500042 CATACGGAATTCATTCCATGTCTAA
1 CATACGGAGTTCATTCCATGTCTAA
14500067 CCCTACGGAG
Statistics
Matches: 268, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 7 0.03
158 254 0.95
159 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CATACGGAGTTCATTCCATGTCTAAGACCAGATCAGACCGAGGGTTGCGACAGCAGGATCAACAG
CACGTAGAGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGG
Found at i:14500287 original size:26 final size:26
Alignment explanation
Indices: 14500251--14500303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14500241 GTTGACTTAG
*
14500251 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* *
14500277 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
14500303 G
1 G
14500304 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:14500592 original size:158 final size:159
Alignment explanation
Indices: 14500338--14500683 Score: 446
Period size: 158 Copynumber: 2.2 Consensus size: 159
14500328 GTAGGATCGG
* * ***** * ***
14500338 CAGCACGCAG-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCAACTGAGC
1 CAGCACGCAGAAGGGGACCGGGTCGATCCCTGGCTTACGCATTAGGTTTCTCTGGCCGGTTGAGC
* *
14500402 GCCCGTACACCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
66 GCCCGCACACCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGC
*
14500467 CGGACCAAGGGTTGTGGCAGCAGGACCGA
131 CGGACCAAGGGTTGTGGCAGCAGGACCAA
*
14500496 CAGCACGCAGAAGGGGATCGGG-CTGATCCCTGGCTTACGCATTAGGTTTCTCTGGCCGGTTGAG
1 CAGCACGCAGAAGGGGACCGGGTC-GATCCCTGGCTTACGCATTAGGTTTCTCTGGCCGGTTGAG
* * *
14500560 TGCCCGCACGCCCG-TTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAG
65 CGCCCGCACACCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAG
* ** *
14500624 TCGGACTGAGGGTTGTGGCAGCGGGACCAA
130 CCGGACCAAGGGTTGTGGCAGCAGGACCAA
* *
14500654 CAGTACGCAGAGGGGGACCGGGTCGATCCC
1 CAGCACGCAGAAGGGGACCGGGTCGATCCC
14500684 CAACTTGCGC
Statistics
Matches: 160, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
158 109 0.68
159 51 0.32
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (159 bp):
CAGCACGCAGAAGGGGACCGGGTCGATCCCTGGCTTACGCATTAGGTTTCTCTGGCCGGTTGAGC
GCCCGCACACCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGC
CGGACCAAGGGTTGTGGCAGCAGGACCAA
Found at i:14500728 original size:158 final size:158
Alignment explanation
Indices: 14500277--14500936 Score: 618
Period size: 159 Copynumber: 4.2 Consensus size: 158
14500267 CCCAGTCTAA
** * * * * * *
14500277 GCATACGGAGTTCATTCACA-GTCTAAG-ATCGGACC-GA-CGAGGGTTGCGACAGTAGGATCGG
1 GCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGA
* * * * **
14500338 CAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCAACTGAGCG
64 CAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCG
* * *
14500403 CCCGTACACCCGTTTCGTGGGTTGGCATAG
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* *
14500433 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * **** * * * *
14500498 GCACGCAGAAGGGGATCGGG-CTGATCCCTGGCTTACGCATTAGGTTTCTCTGGCCGGTTGAGTG
66 GCACGCAG-GGGGGACCGGGTC-GATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCG
14500562 CCCGCACGCCCG-TTCGTGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * *
14500591 GCATAGGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * *
14500656 GTACGCAGAGGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
66 GCACGCAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCGC
* * * *
14500721 CCACACGCTCATTTCGTGGGTTGACTTAG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* ** ** * *
14500750 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGA
* * * *
14500813 TAGCACGCAGGGGGGCACCGGGTCGGTCCCCGACTTGCGCATTCTACCTCTCC-AGTCGGCTGAG
64 CAGCACGCAGGGGGG-ACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGA-CCGGCTGAG
* ** *
14500877 CGCCCGCATGCTTGTTTCATGGGTTGGCTTAG
127 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
14500909 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
14500937 ATACGGAGTT
Statistics
Matches: 411, Mismatches: 79, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
155 2 0.00
156 25 0.06
157 4 0.01
158 171 0.42
159 206 0.50
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:14500939 original size:26 final size:26
Alignment explanation
Indices: 14500909--14500961 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14500899 GTTGGCTTAG
14500909 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
14500935 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
14500961 G
1 G
14500962 ATTAGACTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:14501316 original size:26 final size:26
Alignment explanation
Indices: 14501280--14501330 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14501270 TGGCTTAGGC
* *
14501280 ATACGGAGTTCCTCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* *
14501306 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
14501331 ATCGGACCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:14502536 original size:26 final size:26
Alignment explanation
Indices: 14502500--14502552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14502490 GTTGACTTAG
14502500 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14502526 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14502552 G
1 G
14502553 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14502858 original size:65 final size:65
Alignment explanation
Indices: 14502754--14502879 Score: 227
Period size: 65 Copynumber: 1.9 Consensus size: 65
14502744 GGTAGCACGC
*
14502754 AGAGGGGGATCGGGTCGATCTCTGGCTTGCGCACTATGCCTCTTCGGTCGGCCTCTCCGATACGT
1 AGAGGGGGATCGGGTCGATCCCTGGCTTGCGCACTATGCCTCTTCGGTCGGCCTCTCCGATACGT
14502819 AGAGGGGGATCGGG-CTGATCCCTGGCTTGCGCACTATGCCTCTTCGGTCGGCCTCTCCGAT
1 AGAGGGGGATCGGGTC-GATCCCTGGCTTGCGCACTATGCCTCTTCGGTCGGCCTCTCCGAT
14502880 CGGCTCAGCG
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
64 1 0.02
65 58 0.98
ACGTcount: A:0.12, C:0.30, G:0.33, T:0.25
Consensus pattern (65 bp):
AGAGGGGGATCGGGTCGATCCCTGGCTTGCGCACTATGCCTCTTCGGTCGGCCTCTCCGATACGT
Found at i:14502968 original size:26 final size:26
Alignment explanation
Indices: 14502920--14502972 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14502910 GTTGACTTAG
* **
14502920 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCAAAGTCTAA
*
14502946 GCATACGGAGTTCATTCAAAGTCTAA
1 GCATACGGAGTTCATCCAAAGTCTAA
14502972 G
1 G
14502973 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCAAAGTCTAA
Found at i:14503288 original size:26 final size:26
Alignment explanation
Indices: 14503252--14503304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14503242 GTTGACTTAG
14503252 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14503278 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14503304 G
1 G
14503305 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14504367 original size:26 final size:26
Alignment explanation
Indices: 14504337--14504389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14504327 CTTGACTTAG
14504337 GCATACGGA-GTTCATCCCCAGTCTAA
1 GCATAC-GACGTTCATCCCCAGTCTAA
*
14504363 GCATACGACGTTCATTCCCAGTCTAA
1 GCATACGACGTTCATCCCCAGTCTAA
14504389 G
1 G
14504390 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGACGTTCATCCCCAGTCTAA
Found at i:14505705 original size:159 final size:158
Alignment explanation
Indices: 14505467--14505917 Score: 475
Period size: 159 Copynumber: 2.8 Consensus size: 158
14505457 GGGTTACGGT
* * * * *
14505467 AGCAGGATCGGCAGCACGCAAGGGGGA-CCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGACCGACAGCACGCAGGGGGGATCAG-GCCGATCCCCAGCTTGCGCATTCTGCCTCTCCG
* * * * *
14505531 GCCGGTTGAGCGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GACGGCTGAGTGCCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
14505595 CTAAGCCCA-AGCCGGACCGAGGGCTGTGGC
129 CTAAGCCCAGA-CCGGACCAAGGGCTGCGGC
* * * *
14505625 AGCGGGACCGATAGCACGTAGAGGGGGA-CTAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCC
1 AGCAGGACCGACAGCACGCAG-GGGGGATC-AGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC
* * * *
14505689 GGTCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC-TAG
64 GGACGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-G
* ** * * *
14505753 GCTAAGATCGGACCGGACCAAGGGTTGCGGT
128 TCTAAGCCCAGACCGGACCAAGGGCTGCGGC
* * * * * * *
14505784 AGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGGTCCCC-GATTTGTGCATTCTGCCTCTCC-
1 AGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCG
*
14505847 GACTGGCTGAGTACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 GAC-GGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
14505912 CTAAGC
129 CTAAGC
14505918 ATATGGAGTT
Statistics
Matches: 241, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 107 0.44
159 128 0.53
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
AGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG
ACGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCAGACCGGACCAAGGGCTGCGGC
Found at i:14505883 original size:158 final size:155
Alignment explanation
Indices: 14505415--14505916 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 155
14505405 CCCAGTCTAA
* * * * *
14505415 GCATAC-AGAGTTCATTCCCAATCTAAGATCGGACCGAACTGAGGGTTACGGTAGCAGGATCGGC
1 GCATACGA-AGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
14505479 AGCACGCAAGGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGC
64 AGCACGCAGGGGGGA-CGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-GCTGGCTGAGTGC
*
14505544 CCGCACGC-CTGTTTCATGGGTTGGCTTAG
127 CCGCACGCTC-ATTTCATGGGTTGGCTTAG
* * * ** * * * * * *
14505573 GCATAGGGAGTTCATTCCATGTCTAAG-CCCAAGCCGGACCGAGGGCTGTGGCAGCGGGACCGAT
1 GCATACGAAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * *
14505637 AGCACGTAGAGGGGGACTAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTG
64 AGCACGCAG-GGGGGAC-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGCT-GGCTGAGTG
*
14505702 CCCGCACGCTCATTTCATGGGTTGACTTAG
126 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
14505732 GCATACGAAGTTCATTCCTAGGCTAAGATCGGACCGGACCAAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
14505797 GCACGCAGGGGGGATCGGGTCGGTCCCC-GATTTGTGCATTCTGCCTCTCCGACTGGCTGAGTAC
65 GCACGCAGGGGGGA-CGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCG-CTGGCTGAGTGC
14505861 CCGCACGCTCATTTCATGGGTTGGCTTAG
127 CCGCACGCTCATTTCATGGGTTGGCTTAG
*
14505890 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCA-GTCTAAG
14505917 CATATGGAGT
Statistics
Matches: 275, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 7 0.03
158 141 0.51
159 123 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGACGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGCTGGCTGAGTGCCCGC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:14505920 original size:26 final size:26
Alignment explanation
Indices: 14505890--14505942 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14505880 GTTGGCTTAG
14505890 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
*
14505916 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
14505942 G
1 G
14505943 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:14506288 original size:26 final size:26
Alignment explanation
Indices: 14506258--14506310 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14506248 GTTGACTTAG
14506258 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14506284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14506310 G
1 G
14506311 ATCGGACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14506763 original size:158 final size:156
Alignment explanation
Indices: 14506284--14506776 Score: 463
Period size: 158 Copynumber: 3.1 Consensus size: 156
14506274 CCCAGTCTAA
* * * * *
14506284 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGGACCAAGGGTTGCGGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCT-AGATCAGATC-GGACAAAGGGTTGTGGCAGCAGGATTGAC
* * * * * *
14506348 AGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCAC
64 AGCACGCAGGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCAC
* * *
14506413 CTGCACTCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *
14506442 GCATAAGGAGTTCATT-CCATGTCTAAACCCCAG-TCGGACTGAGGGTTATGGCAGCGGGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAGA--TCAGATCGGACAAAGGGTTGTGGCAGCAGGATTGA
* * * * * * * *
14506505 CAGCATGCAGAGGGTGACCAGGCCAATACCCGGCTTGCGCATTATGCCTCT-TCAGCCGGCTCAG
63 CAGCACGCAG-GGGGGACC-GGGCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGCCGGCTAAG
* * * *
14506569 CACCCGTACGCTCGTTTCGTGTGTTGACTTAT
125 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14506601 GCATACGTAGTTCATTCCCAGTCTAGGATCAGATCGAACAAAGGGTTGTGGCAACAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTA-GATCAGATCGGACAAAGGGTTGTGGCAGCAGGATTGACA
** * * *
14506666 GCACGTTGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTAAACGCC
65 GCACGCAGGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACC
*
14506731 CACACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
14506759 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
14506777 ATGTCTAAGC
Statistics
Matches: 259, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 7 0.03
158 132 0.51
159 114 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAGATCAGATCGGACAAAGGGTTGTGGCAGCAGGATTGACAG
CACGCAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14507516 original size:26 final size:25
Alignment explanation
Indices: 14507479--14507557 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 25
14507469 GTTGACTTAG
*
14507479 GCATACAAAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCAT-CCCAGTTTAA
*
14507505 GCATACAGAGTTCATTCCA-TATCTAA
1 GCATACAGAGTTCATCCCAGT-T-TAA
* *
14507531 CCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCA-TCCCAGTTTAA
14507557 G
1 G
14507558 ATTTTGAGCC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
24 1 0.02
25 4 0.09
26 33 0.77
27 4 0.09
28 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTTTAA
Found at i:14508279 original size:26 final size:26
Alignment explanation
Indices: 14508229--14508281 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14508219 GTTAACTTAG
* *
14508229 GCATACGGAGTTCATCCCTGATCTAA
1 GCATACGAAGTTCATCCCAGATCTAA
14508255 GCATACGAAGTTCATTCCCAG-TCTAA
1 GCATACGAAGTTCA-TCCCAGATCTAA
14508281 G
1 G
14508282 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAGATCTAA
Found at i:14509055 original size:171 final size:170
Alignment explanation
Indices: 14508802--14509126 Score: 420
Period size: 171 Copynumber: 1.9 Consensus size: 170
14508792 CAGACCGAGA
* * *
14508802 GTTGCGGCAGTAGGACCAGCAGTAGGATCGACAGCACATAGGGGGGACCGAGCCAATCCGCGGCT
1 GTTGCGGCAGCAGGACCAACAGCAGGATCGACAGCACATAGGGGGGACCGAGCCAATCCGCGGCT
* * * *
14508867 TACGCATTCTGCCTCTTCAACCAG-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
66 TACGCATTATGCCTCTTC-ACCAGACTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCA
14508931 TACAGAGTTCATTCCAT-GTCTAAGCCCTAGCCAAACTGAGG
130 TACAGAGTTCA-TCCATAGTCTAAGCCCTAGCCAAACTGAGG
* * * * * ** *
14508972 GTTGTGGCAGCAGGACCAACAGCGGGATCGACAGCACGTAGAGGGGGACTGGGCTGATCCTCGGC
1 GTTGCGGCAGCAGGACCAACAGCAGGATCGACAGCACATAG-GGGGGACCGAGCCAATCCGCGGC
* ** *
14509037 TTGCGCATTATGCCTCTTCGGCTGACTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCA
65 TTACGCATTATGCCTCTTCACCAGACTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCA
* *
14509102 TACGGAGTTCATCCCTAGTCTAAGC
130 TACAGAGTTCATCCATAGTCTAAGC
14509127 ATACAGAGTT
Statistics
Matches: 131, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
170 41 0.31
171 90 0.69
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (170 bp):
GTTGCGGCAGCAGGACCAACAGCAGGATCGACAGCACATAGGGGGGACCGAGCCAATCCGCGGCT
TACGCATTATGCCTCTTCACCAGACTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCAT
ACAGAGTTCATCCATAGTCTAAGCCCTAGCCAAACTGAGG
Found at i:14509135 original size:26 final size:27
Alignment explanation
Indices: 14509094--14509149 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
14509084 CGTGGGTTGA
*
14509094 CTAAGGCATACGGAGTTCA-TCCCTAGT
1 CTAAGGCATACAGAGTTCATTCCC-AGT
14509121 CTAA-GCATACAGAGTTCATTCCCAGT
1 CTAAGGCATACAGAGTTCATTCCCAGT
14509147 CTA
1 CTA
14509150 GGATCAGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATTCCCAGT
Found at i:14509636 original size:26 final size:26
Alignment explanation
Indices: 14509600--14509652 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14509590 GTTAGCTTAG
14509600 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14509626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14509652 G
1 G
14509653 ATTTTGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14510353 original size:26 final size:26
Alignment explanation
Indices: 14510323--14510375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14510313 GTTGACTTTG
14510323 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
14510349 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14510375 G
1 G
14510376 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14510669 original size:159 final size:157
Alignment explanation
Indices: 14510475--14510852 Score: 401
Period size: 159 Copynumber: 2.4 Consensus size: 157
14510465 TTGGCTGAGT
* * * *
14510475 GCCCGCACGCCCATTTCATGGGTT-AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-
1 GCCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
* * *
14510538 ACTGGACCGAGGGTT-GTGGCA-GCTAGACTGGCAGCACGCAGAGGTGG-ACCGGGCCAATCCCC
65 ACTGGACCGAGGGTTAGTAGCAGGATAGA-TGGCAG-A--CAG-GG-GGAACCGAGCCAATCCCC
*
14510600 AGTTTGCGCATTATGCCTCTTCGATCAGCTCAGC
124 AGCTTGCGCATTATGCCTCTTCGATCAGCTCAGC
* * *
14510634 GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GCCTAAG-ATCAG
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * *
14510697 ACTGGACCGAGGGTTGCAGTAGCAGGATTGATGGCAGACAGGGGGAAACCGAGCCGATCCCTAGC
65 ACTGGACCGAGGGTT--AGTAGCAGGATAGATGGCAGACAGGGGG-AACCGAGCCAATCCCCAGC
* ** *
14510762 TTGCGCATTCTGCCTCTTCGATTGGCTGAGC
127 TTGCGCATTATGCCTCTTCGATCAGCTCAGC
* * * * *
14510793 GCCCGTACACTTGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14510853 TACGGAGTTC
Statistics
Matches: 183, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
157 2 0.01
158 7 0.04
159 153 0.84
160 5 0.03
161 1 0.01
162 11 0.06
163 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CTGGACCGAGGGTTAGTAGCAGGATAGATGGCAGACAGGGGGAACCGAGCCAATCCCCAGCTTGC
GCATTATGCCTCTTCGATCAGCTCAGC
Found at i:14511898 original size:159 final size:158
Alignment explanation
Indices: 14511606--14511900 Score: 396
Period size: 159 Copynumber: 1.9 Consensus size: 158
14511596 CGAGGGTTGC
* * * * * *
14511606 GGCAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGTATTTTACCTCGC
1 GGCAGCAGGACCGGCAGCACGCAAGGGGGACCGCGCCAATCCCCAGCTTGCGCATTTTACCTCGC
* * * *
14511671 CAGTTGACTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCAATG
66 CAGTCGACTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTCCAATG
14511736 TCTAAGCCCCAGCTAGACCGAGGGCTAT
131 TCTAAGCCCCAGCTAGACCGAGGGCTAT
* ** * *
14511764 GGCAGCAGGACCGGCAGCACGCAAAGGGGGACCGCGTCGTTCCCTAGCTTGCGCATTTTACCTCT
1 GGCAGCAGGACCGGCAGCACGC-AAGGGGGACCGCGCCAATCCCCAGCTTGCGCATTTTACCTCG
* *
14511829 CCAGTCGACTGAGCACCCGTACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCT
65 CCAGTCGACTGAGCACCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTC-TTCCA
14511893 A-GTCTAAG
128 ATGTCTAAG
14511901 ATTTTAAGCC
Statistics
Matches: 117, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
158 22 0.19
159 91 0.78
160 4 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GGCAGCAGGACCGGCAGCACGCAAGGGGGACCGCGCCAATCCCCAGCTTGCGCATTTTACCTCGC
CAGTCGACTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTCCAATG
TCTAAGCCCCAGCTAGACCGAGGGCTAT
Found at i:14512603 original size:26 final size:26
Alignment explanation
Indices: 14512573--14512625 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14512563 GTTCACTTAG
*
14512573 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14512599 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14512625 G
1 G
14512626 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14512891 original size:159 final size:159
Alignment explanation
Indices: 14512686--14513135 Score: 448
Period size: 159 Copynumber: 2.8 Consensus size: 159
14512676 GACCAGATCG
* *
14512686 ATCCCTGACTTGCGCATTCTGCCTCT-TCGG-CTGGCTGAGTGCCCGCATGCCTGTTTCATGGGT
1 ATCCCTGGCTTGCGCATTCTGCCTCTCT-GGTC-GGCTGAGTGCCCGCACGCCTGTTTCATGGGT
* **
14512749 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGTGG
64 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAG
* *
14512814 GACCGACAGCATGCAAAGG-G-GGACCGGGCCA
129 GACCGACAACATG--AAGGAGCGGACCAGGCCA
* * *
14512845 ATCCCTGGCTTGCGCATTATGCCTCTCTGGTCAGCTCAGTGCCCGCACG-CTCGTTTCATGGGTT
1 ATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCACGCCT-GTTTCATGGGTT
** **** * * *
14512909 AACTTAGGCATACGGAGTTCATTCACAT-TCTAAG-ATTGGACCAGACCGACGGTTGTGGTAGCA
65 GGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCGGACCGAAGGTTGTGGCAGCA
** * *
14512972 GGATTGACAACATGTAGGAGCGGACCAGGCCG
128 GGACCGACAACATGAAGGAGCGGACCAGGCCA
** *** * ** * *
14513004 ATCCCCAGCTTATACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCC-GTTTCGTGGGTAG
1 ATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCACGCCTGTTTCATGGGTTG
* * * *
14513068 GCTTAGGCATATGGAGTTCATCCCATGTCTAAGCCCCAGTCGGACTGAAGGTTGTGGCAGCAGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGA
14513133 CCG
131 CCG
14513136 GCAGCGGGAA
Statistics
Matches: 230, Mismatches: 51, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.03
158 62 0.27
159 156 0.68
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
ATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCACGCCTGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGA
CCGACAACATGAAGGAGCGGACCAGGCCA
Found at i:14513288 original size:26 final size:26
Alignment explanation
Indices: 14513258--14513310 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14513248 GTTGACTTAG
14513258 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14513284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14513310 G
1 G
14513311 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14513640 original size:159 final size:159
Alignment explanation
Indices: 14513284--14513785 Score: 405
Period size: 159 Copynumber: 3.2 Consensus size: 159
14513274 CCCAGTCTAA
* * * * * *
14513284 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGATCGAGGGTTGCAACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATAGAC
* * * * * * * * * * * *
14513348 AGCACG--TAGGGGGA-CAGGGTCGACCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTAAGT
65 AGCACGCAGAGGGGGACCA-AGTCGATCCTCGGCTTGCGCATTATACCTCTCTGGCCGGCTCAGC
* * *
14513410 ACCCGCACG-TCCGTTTCTTGGGTTGGCTTAG
129 GCCCGCACGCT-CGTTTCATGGGTTGACTTAG
* * ** * ** * * *
14513441 GCATA-GCGAGTTCATTCCATTTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGTAGCGGGATCGA
1 GCATACG-GAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCAGCAGCAGGATAGA
* * * * * * * *
14513504 CAGCATGTAGAGGGGGACC-GGGCTGATCC-CTGGCTTGCGTATTATGCCTCT-TCGGTCGGGTC
64 CAGCACGCAGAGGGGGACCAAGTC-GATCCTC-GGCTTGCGCATTATACCTCTCT-GGCCGGCTC
* * * *
14513566 AGCGCCTGCACGCTTGTTTCATTGGTTGACTTAT
126 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
14513600 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATAGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATAGAC
* *
14513664 AGCACGCAGAGGGGGACCAAGTCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCG
65 AGCACGCAGAGGGGGACCAAGTCGATCCTCGGCTTGCGCATTATACCTCTCTGGCCGGCTCAGCG
* *
14513729 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGACTTAG
14513759 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14513786 CATACGGAGT
Statistics
Matches: 268, Mismatches: 60, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
156 6 0.02
157 49 0.18
158 7 0.03
159 194 0.72
160 12 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATAGACA
GCACGCAGAGGGGGACCAAGTCGATCCTCGGCTTGCGCATTATACCTCTCTGGCCGGCTCAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:14514764 original size:159 final size:159
Alignment explanation
Indices: 14514547--14515014 Score: 503
Period size: 159 Copynumber: 2.9 Consensus size: 159
14514537 GACAGCACGT
* * * * * **
14514547 AGGGGGATCGGACCGATCCCTGGCTTGCGCATTTTGTCTCTCTGGTCGACTGTTTGCCCGCAC-C
1 AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGC
* * ** *
14514611 CCTGTTTCCTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAG
66 TC-GTTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAG
*
14514676 GGTTGTGGTAACGGGACCGGTAGCACGCAG
130 GGTTGTGGTAACAGGACCGGTAGCACGCAG
* * * *
14514706 AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GACTGGCTCAGTGCCCCCACG
1 AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTC-GGCTGAGTGCCCGCACG
* * * ** * * *
14514770 CTCGTTTCATGGGTTGACCTAGGCATACTGAGTTCCTTCCCA-GTCTAAGATCGAACCAGACCGA
65 CTCGTTTCATGGGTTGGCCTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGA
** * * * * *
14514834 GGGTTGCAGTAGCAGGATCGATAGTATGCAG
129 GGGTTGTGGTAACAGGACCGGTAGCACGCAG
* * * *
14514865 -GGGGGATCGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGTGCCCGTACGC
1 AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGC
* ** *
14514929 TCGTTTCGTGGGTTGGTTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGATTGAGG
66 TCGTTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGG
* *
14514994 GTTGTGGCAACATGACCGGTA
131 GTTGTGGTAACAGGACCGGTA
14515015 ATGGGATCGA
Statistics
Matches: 246, Mismatches: 58, Indels: 11
0.78 0.18 0.03
Matches are distributed among these distances:
157 3 0.01
158 118 0.48
159 120 0.49
160 5 0.02
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.25
Consensus pattern (159 bp):
AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGC
TCGTTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGG
GTTGTGGTAACAGGACCGGTAGCACGCAG
Found at i:14515088 original size:13 final size:13
Alignment explanation
Indices: 14515070--14515097 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14515060 TGCTCATTAT
14515070 GCCTCTCCGACCG
1 GCCTCTCCGACCG
14515083 GCCTCTCCGACCG
1 GCCTCTCCGACCG
14515096 GC
1 GC
14515098 TGAGCGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.54, G:0.25, T:0.14
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:14519333 original size:11 final size:11
Alignment explanation
Indices: 14519317--14519351 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
14519307 GCTGGTGGCT
14519317 TCCTCTCGCCA
1 TCCTCTCGCCA
14519328 TCCTCTCGCCA
1 TCCTCTCGCCA
14519339 TCCTCTCGCCA
1 TCCTCTCGCCA
14519350 TC
1 TC
14519352 TATGATCGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.09, C:0.54, G:0.09, T:0.29
Consensus pattern (11 bp):
TCCTCTCGCCA
Found at i:14520199 original size:26 final size:26
Alignment explanation
Indices: 14520162--14520214 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14520152 GTTGACTTAG
14520162 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
14520188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
14520214 G
1 G
14520215 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:14520489 original size:158 final size:156
Alignment explanation
Indices: 14520243--14520847 Score: 545
Period size: 158 Copynumber: 3.8 Consensus size: 156
14520233 TTGCAGCAGT
** * **
14520243 AGGATCGACAGCACGCAGAAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCG
1 AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCG
* *
14520308 GCTGAGCGCCTGCATGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
65 GCTGAGCGCCCGCACGCC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
* *
14520373 CCCCAGCCGGACCGAGGGTTGTGGCAGG
129 CCCCAGCCGGACCGAGGGTTGTGGAAGC
* * * *
14520401 GGGATCGACAGCACACAGGGGGGACCGAGCGGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCA
1 AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCG-CTTGTGCATTCTGCCTCTCCGGCCG
* **
14520466 GCTGAGCGCCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAG
65 GCTGAGCGCCCGCACG-CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
* *
14520531 CCCCAGCTGGACTGAGGGTTGTGGAAGC
129 CCCCAGCCGGACCGAGGGTTGTGGAAGC
* * * * * * *
14520559 AGGACCGACAGCACGCAGAGGGGAACCGAGCTGATCCTCGCTTGCGCATTATGCCTCAT-CGGTC
1 AGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGCTTGTGCATTCTGCCTC-TCCGGCC
* * * * * * * *
14520623 GGCTCAACGCCCGTACGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCAAGTCTAA
64 GGCTGAGCGCCCGCACGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAA
** * * * * ** *
14520688 G-ATCGGATCAGATCGAGGGTT-ACGACAAC
128 GCCCCAG-CCGGACCGAGGGTTGTGGA-AGC
* * * * * *
14520717 AGGATCGATAGCACGTAGTGGGGG-CTGAGCCTATCCCCAGCTTGCT-CAATCTGCCTCTCCGAC
1 AGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCC-GCTTG-TGCATTCTGCCTCTCCGGC
* * * * * * * * *
14520780 CGACTGAGCGACCGCACGCTCATTTCGTAGGTTAGCTTAAGCATACGGAGTTCATTCCATGTCTA
63 CGGCTGAGCGCCCGCACGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTA
14520845 AGC
127 AGC
14520848 ATACAGAGTT
Statistics
Matches: 362, Mismatches: 74, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
157 17 0.05
158 324 0.90
159 21 0.06
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
AGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCGG
CTGAGCGCCCGCACGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCC
CCAGCCGGACCGAGGGTTGTGGAAGC
Found at i:14520870 original size:26 final size:26
Alignment explanation
Indices: 14520817--14520872 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14520807 TAGGTTAGCT
* **
14520817 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACAGAGTTCATTCCAAATC
14520843 TAAGCATACAGAGTTCATTCCAAATC
1 TAAGCATACAGAGTTCATTCCAAATC
14520869 TAAG
1 TAAG
14520873 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCAAATC
Found at i:14521578 original size:26 final size:26
Alignment explanation
Indices: 14521541--14521593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14521531 GTTGACTTAG
* *
14521541 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
14521567 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14521593 G
1 G
14521594 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14521933 original size:26 final size:26
Alignment explanation
Indices: 14521896--14521948 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14521886 GTTGACTTAG
14521896 GCATACGAAGTTC-ATCCCCAATCTAA
1 GCATACGAAGTTCAAT-CCCAATCTAA
* *
14521922 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAATCTAA
14521948 G
1 G
14521949 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAATCTAA
Found at i:14522470 original size:158 final size:158
Alignment explanation
Indices: 14521922--14522576 Score: 562
Period size: 158 Copynumber: 4.2 Consensus size: 158
14521912 CCCAATCTAA
* * * * * * * *
14521922 GCATACGGAGTTCAATCCCA-GTCTAAGATCGGATCGGAACGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTC-ATTCCATGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
14521986 AGCACGTA-AGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTTCGACTGACTGAACGC
* *
14522050 CCGCACGCCCATTTCATGGGTTGGCTTAA
130 CCGCACGCCCATTTCATGGGTTGACTTAG
* * * *
14522079 GCATAGGGAGCTCATTCCATGTCTAAG-CCCTAGCCGGACCGAAGGTTGTGGCAGC-GGTATCGA
1 GCATACGGAGTTCATTCCATGTCTAAGACCCGA-CCGGACCGAGGGTTGTGGCAGCAGG-ATCGA
* * * * * * * *
14522142 CAGCACACAGGGGGGACCGAGCGGATCCCCAGCTTGCGCATTATG-CTCTCTGGTC-GA-TGAGC
64 CAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCT-TCGACTGACTGAAC
* * * *
14522204 ACCCGCACACCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCCCATTTCATGGGTTGACTTAG
* * * * * *
14522235 GCATAAGGAGTTCACTCCATGTCTAAGCCCCAACC-GACCAAGGGTTGTGGCAGCAGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATC-GAC
* ** *
14522298 AGCACGCAGAGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACTGACTGAACGC
65 AGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTTCGACTGACTGAACGC
* * * * * *
14522363 CTGTATGCTCATTTCGTGGGTTGACTTAT
130 CCGCACGCCCATTTCATGGGTTGACTTAG
* * *
14522392 GCATACGGAGTTCATTCCGA-GTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCC-ATGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * ** * * * *
14522456 AGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCACATTCTGCCT-TTCCGGC-CAGCTGAGC
65 AGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTT-CGACTGA-CTGAAC
* * * *
14522519 GCCCGCACGCTCGTTTCGTAGGTT-AGCTTAG
128 GCCCGCACGCCCATTTCATGGGTTGA-CTTAG
14522550 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14522577 CATATGGAGT
Statistics
Matches: 402, Mismatches: 78, Indels: 35
0.78 0.15 0.07
Matches are distributed among these distances:
154 1 0.00
155 60 0.15
156 75 0.19
157 112 0.28
158 153 0.38
159 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTTCGACTGACTGAACGCC
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:14522600 original size:26 final size:26
Alignment explanation
Indices: 14522550--14522602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14522540 GTTAGCTTAG
*
14522550 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
14522576 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
14522602 G
1 G
14522603 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:14523857 original size:26 final size:26
Alignment explanation
Indices: 14523827--14523879 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14523817 GTTGGCTTAG
14523827 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14523853 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14523879 G
1 G
14523880 AACGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14528129 original size:26 final size:26
Alignment explanation
Indices: 14528100--14528152 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14528090 GTTGACTTAG
*
14528100 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACAGAGTTCACTCCCA-GTCTAA
*
14528126 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
14528152 G
1 G
14528153 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:14528531 original size:158 final size:156
Alignment explanation
Indices: 14528234--14528794 Score: 422
Period size: 158 Copynumber: 3.6 Consensus size: 156
14528224 GATCCCCGAT
* * * * *
14528234 TTGCACATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTCGGCA
1 TTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCA
* * * * * *
14528299 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGTAGGATCGACAACA
66 TAAGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGA-GGTTACGGCAGCAGGATCGACAACA
* * * *
14528364 CGTAGGGGGGACCGGGCTGATCCTCGGC
130 CATAAGGGGGACCAGGC-GATCCTCAGC
* * *
14528392 TTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGTA
1 TTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCA
* ** *
14528457 TAAGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGA-GTATGTGGCAGCGGGA-CTGACA
66 TAAGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGT-TACGGCAGCAGGATC-GACA
* * *
14528518 GCACATAAAGGGGGATCAGGCGGTCCTCAGC
127 ACACAT-AAGGGGGACCAGGCGATCCTCAGC
* * * * * * * * * *
14528549 TTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCC-TACGCTCGTTTCGTGGGTTGACTTATGCG
1 TTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCA
* * * * * * * * *
14528613 TACA-AAGTTCAATCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCAAGATCGATAGC
66 TA-AGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGA-GGTTACGGCAGCAGGATCGACAAC
* * * ** *
14528677 ACACAGGGGGCGACTGAACCGATACC-CTGC
129 ACATAAGGGG-GAC-CAGGCGAT-CCTCAGC
* ** * * *
14528707 TTGTGCATTCTGCCTCTCCGACCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTT-AGCTTAGGC
1 TTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGA-CTTAGGC
14528771 AT-AGGAGTTCATT-CCATGTCTAAG
65 ATAAGGAGTTCATTCCCA-GTCTAAG
14528795 CATACGGAGT
Statistics
Matches: 317, Mismatches: 68, Indels: 36
0.75 0.16 0.09
Matches are distributed among these distances:
155 3 0.01
156 54 0.17
157 84 0.26
158 148 0.47
159 28 0.09
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (156 bp):
TTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCA
TAAGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGTTACGGCAGCAGGATCGACAACAC
ATAAGGGGGACCAGGCGATCCTCAGC
Found at i:14528803 original size:26 final size:25
Alignment explanation
Indices: 14528769--14528820 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
14528759 GTTAGCTTAG
14528769 GCATAGGAGTTCATT-CCATGTCTAA
1 GCATAGGAGTTCATTCCCA-GTCTAA
14528794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATTCCCAGTCTAA
14528820 G
1 G
14528821 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 17 0.68
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAGTCTAA
Found at i:14530237 original size:26 final size:26
Alignment explanation
Indices: 14530201--14530253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14530191 GTTGACTTAG
*
14530201 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
14530227 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
14530253 G
1 G
14530254 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:14530695 original size:158 final size:158
Alignment explanation
Indices: 14530227--14530728 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 158
14530217 CCCAGTCTAA
* * *
14530227 GCATAAGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
14530292 GCACGCAGGGGGGA-CAAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCCGAGCGC
66 GCACGAAAGGGGGATC-GGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
14530356 CCGCACGTTCGTTTCTTGGGTTGGCTTAG
130 CTGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * *
14530385 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCAAGGGTTATGGCAGTAGGACCGAC
1 GCATAAGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
14530449 AGCATAC-AAAGGGGGATCGGGCTGATCCCCGACTTGCACATTATGCCTTTCCGACCGGCTCAGC
65 AGC--ACGAAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGC
* *
14530513 -ACTCGC-CTGCTCGTTTCATGGGTTGACTTAG
128 GCCT-GCAC-GCTCGTTTCATGGGTTGGCTTAG
* ** *
14530544 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAAA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
14530609 GCACGTAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTACCTCTCC-AGTCGACTGAGCGC
66 GCACGAAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGA-CCGGCTGAGCGC
*
14530673 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CTGCACGCTCGTTTCATGGGTTGGCTTAG
* * **
14530702 GCATACGAAGTTCATTCCGTGTCTAAG
1 GCATAAGGAGTTCATTCCCAGTCTAAG
14530729 CATACGGAGT
Statistics
Matches: 275, Mismatches: 58, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 146 0.53
159 118 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGAAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCC
TGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:14530739 original size:26 final size:26
Alignment explanation
Indices: 14530702--14530754 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14530692 GTTGGCTTAG
**
14530702 GCATACGAAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
14530728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14530754 G
1 G
14530755 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14530874 original size:185 final size:184
Alignment explanation
Indices: 14530544--14530914 Score: 521
Period size: 185 Copynumber: 2.0 Consensus size: 184
14530534 GTTGACTTAG
*
14530544 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAAA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGTGGCAGCAGGATCGAAA
* *
14530609 GCACGTAAGGGGGATCGGGCCGATCCTCGACTTGCACATTCTACCTCTCCAGTCGACTGAGCGCC
66 GCACGTAAGGGGGATCGAGCCGATCCCCGACTTGCACATTCTACCTCTCCAGTCGACTGAGCGCC
** * *
14530674 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCGTGTCTAA
131 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
* * * * **
14530728 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGTAGCAGGATTGGCA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGTGGCAGCAGGATCGAAA
* ** * * *
14530793 GCACG-CAGTGAGGGATCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCC-GGCTGGCTGAGC
66 GCACGTAAG-G-GGGATCGAGCCGATCCCCGACTTGCACATTCTACCTCTCCAGTC-GACTGAGC
*
14530856 GCCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
128 GCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
14530913 GC
1 GC
14530915 CCTAGCCGGA
Statistics
Matches: 164, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
183 2 0.01
184 66 0.40
185 96 0.59
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGTGGCAGCAGGATCGAAA
GCACGTAAGGGGGATCGAGCCGATCCCCGACTTGCACATTCTACCTCTCCAGTCGACTGAGCGCC
CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
Found at i:14531371 original size:157 final size:157
Alignment explanation
Indices: 14531075--14531943 Score: 772
Period size: 157 Copynumber: 5.5 Consensus size: 157
14531065 ATCAGACCGA
** * * * * * *
14531075 ACCGAGGGTTGTGGCAGTAGGATCGGTAGCATGTAAGGGGGACTGAGCCGATCCCCGGCTTGCGC
1 ACCGAGGGTTGTGGCAGCGGGAT-GGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGC
* * * * ** * ** * ** *
14531140 GTTCTGCCCCTCCGGCCGACTGAGCACCCTACACACCCATTTTGTGGGTTAGCTTAGGCATAGGG
65 ATTATGCCTCTCCGACCGACTGAGTGCCC-GCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
*
14531205 AGTTCATTCCATGTCTAAGCCCTAGCCAG
129 AGTTCATTCCATGTCTAAGCCCCAGCCAG
* *
14531234 ACCGAGGGTTGTGGCAGCGGGATGGCAACACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCA
1 ACCGAGGGTTGTGGCAGCGGGATGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCA
* ** *
14531299 TTTTGCCTCTCCGACCGGTTGAGTGCTCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
66 TTATGCCTCTCCGACCGACTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
*
14531364 TTCATTCCATGTCTAAGCCCCAGTC-G
131 TTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * **
14531390 AACTGAGGGTTGTGGCAGCGGGATCGACAACAGGCA-GGGGGACCGAGCCGATCCCCGGCTTGTA
1 -ACCGAGGGTTGTGGCAGCGGGAT-GGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCG
* * * * *
14531454 CATTCTGCCTCTTCGACCGACTGAGTGCTCGCATGCCCGTTTCGTGAGTTGGCTTAGGCATAGGG
64 CATTATGCCTCTCCGACCGACTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
*
14531519 AGTTCATTCCATGTCTAAGCCCCAGCCGG
129 AGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * * *
14531548 ACCGAGGGTTGTGGCAGCGGGACCGGTAGCAGGCAAAGGGGGATCGGGTCGATCCCCGACTTGCG
1 ACCGAGGGTTGTGGCAGCGGGA-TGGCAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCG
* ** * * * ** * * ** *
14531613 CATTATGCCTCTTCGGTCGGCTTAGTGCCCGCACGCTAGTTTTATGGGTTGACTTATCCATACGG
64 CATTATGCCTCTCCGACCGACTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
** * * *
14531678 AGTTCATTCCCA-GTCTAAGATCAAACCGG
129 AGTTCATT-CCATGTCTAAGCCCCAGCCAG
* * * * * * * *
14531707 ACAGAGGGTTGCGACAGCCGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCCCTGCTTGCGC
1 ACCGAGGGTTGTGGCAGCGGGAT-GGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGC
* * * ** * * * * *
14531772 ATTCTACCTCTCCGGCCGACTGAGCACCCGTATGCTCGTTTCTTAGGTTGGCTTAGGCATACGGA
65 ATTATGCCTCTCCGACCGACTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
* * *
14531837 GTTCATTCCATGTCTATGCCCCAGTCAA
130 GTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * * *
14531865 ACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACTGGGTCGATCCTCGGCTTGTG
1 ACCGAGGGTTGTGGCAGCGGGA-TGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCG
14531930 CATTATGCCTCTCC
64 CATTATGCCTCTCC
14531944 AGCCAGCTCA
Statistics
Matches: 569, Mismatches: 130, Indels: 22
0.79 0.18 0.03
Matches are distributed among these distances:
156 1 0.00
157 216 0.38
158 178 0.31
159 171 0.30
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
ACCGAGGGTTGTGGCAGCGGGATGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCA
TTATGCCTCTCCGACCGACTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
TTCATTCCATGTCTAAGCCCCAGCCAG
Found at i:14531707 original size:159 final size:159
Alignment explanation
Indices: 14531038--14532014 Score: 800
Period size: 159 Copynumber: 6.2 Consensus size: 159
14531028 GGTCAGTTGA
* ** **
14531038 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGATCGG
* * * * * *
14531101 TAGCATG-TAAGGGGGACTGAGCCGATCCCCGGCTTGCGCGTTCTGCCCCTCCGGCCGACTGAGC
64 CAGCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGC
* * *
14531165 ACCCTACACACCCA-TTTTGTGGGTT-AGCTTAG
129 GCCC-GCAC-GCCAGTTTTGTGGGTTGA-CTTAG
* *
14531197 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC-AGACCGAGGGTTGTGGCAGCGGGAT-GGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCGAGGGTTGTGGCAGCGGGATCGGC
* * * * * * ** *
14531260 AACACAC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGTTGAGTG
65 AGCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
* * * ** *
14531324 CTCGCATGCCCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCCAGTTTTGTGGGTTGACTTAG
* * * *
14531354 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGATCGGCA
* * ** * * *
14531419 ACAGGC--AGGGGGACCGAGCCGATCCCCGGCTTGTACATTCTGCCTCTTCGACCGACTGAGTGC
66 GCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * * * * *
14531482 TCGCATGCCCGTTTCGTGAGTTGGCTTAG
131 CCGCACGCCAGTTTTGTGGGTTGACTTAG
* * * *
14531511 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGATCGGCA
* * * * * * * * * * *
14531576 GCAGGCAAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTTAGTGC
66 GCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * *
14531641 CCGCACGCTAGTTTTATGGGTTGACTTAT
131 CCGCACGCCAGTTTTGTGGGTTGACTTAG
* ** * * * * * * * *
14531670 CCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACAGAGGGTTGCGACAGCCGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGATCGGC
* * * * *
14531734 AGCACGC-AGGGGGGACCGAGCTGATCCCCTGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCA
65 AGCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
* * * *
14531798 CCCGTATGCTC-GTTTCT-TAGGTTGGCTTAG
130 CCCGCACGC-CAGTTT-TGTGGGTTGACTTAG
* * * * *
14531828 GCATACGGAGTTCATTCCATGTCTATGCCCCAGTCAAACCAAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGATCGGCA
* * * * * * * * * *
14531893 GCACGTAGAGGGGGACTGGGTCGATCCTCGGCTTGTGCATTATGCCTCTCCAGCC-AGCTCAGCG
66 GCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGCG
*
14531957 CCCGTACGCTCA-TTTTGTGGGTTGACTTAG
130 CCCGCACGC-CAGTTTTGTGGGTTGACTTAG
*
14531987 GCATACGGAGTTCA-TCCACAGTCTAAGC
1 GCATACGGAGTTCATTCCA-TGTCTAAGC
14532015 ATACGGAGTT
Statistics
Matches: 656, Mismatches: 143, Indels: 38
0.78 0.17 0.05
Matches are distributed among these distances:
156 2 0.00
157 214 0.33
158 184 0.28
159 251 0.38
160 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGATCGGCA
GCACGCAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
CCGCACGCCAGTTTTGTGGGTTGACTTAG
Found at i:14531877 original size:317 final size:313
Alignment explanation
Indices: 14531038--14532013 Score: 1041
Period size: 317 Copynumber: 3.1 Consensus size: 313
14531028 GGTCAGTTGA
* * * * **
14531038 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACAGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
14531103 GCATGTAAGGGGGACTGAGCCGATCCCCGGCTTGCGCGTTCTGCCCCTCCGGCCGACTGAGCACC
66 GCACG-CAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
** * * *
14531168 C-TACACACCCATTT-TGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
130 CGT--ATGCCCGTTTCT-T-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * *
14531231 CAGACCGAGGGTTGTGGCAGCGGGA-TGGCAACA-CACAGGGGGGACCGGGCCGATCCCCGGCTT
191 CAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCAGCA-AAGGGGGA-CGGGTCGATCCCCGGCTT
* * * * ** * *
14531294 GCGCATTTTGCCTCTCCGACCGG-TTGAGTGCTCGCATGCCCGTTTCATGGGTTGGCTTAG
254 GCGCATTATGCCTCTCCGGCCGGCTT-AGTGCCCGCACGCTAGTTTTATGGGTTGACTTAG
* ** * ** * *
14531354 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGAACTGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGAACAGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * ** *
14531418 AACAGGCAGGGGGACCGAGCCGATCCCCGGCTTGTACATTCTGCCTCTTCGACCGACTGAGTGCT
65 AGCACGCAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
* * *
14531483 CGCATGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
130 CGTATGCCCGTTTCTTG-GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* *
14531548 ACCGAGGGTTGTGGCAGCGGGACCGGTAGCAGGCAAAGGGGGATCGGGTCGATCCCCGACTTGCG
194 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCA-GCAAAGGGGGA-CGGGTCGATCCCCGGCTTGCG
* * *
14531613 CATTATGCCTCTTCGGTCGGCTTAGTGCCCGCACGCTAGTTTTATGGGTTGACTTAT
257 CATTATGCCTCTCCGGCCGGCTTAGTGCCCGCACGCTAGTTTTATGGGTTGACTTAG
* * * * *
14531670 CCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTGCGACAGCCGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACAGAGGGTTGTGGCAGCAGGATCGACA
* * *
14531735 GCACGCAGGGGGGACCGAGCTGATCCCCTGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCACC
66 GCACGCA-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
* * * * *
14531800 CGTATGCTCGTTTCTTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCCCCAGTCAA
130 CGTATGCCCGTTTCTT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * *
14531865 ACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACTGGGTCGATCCTCGGCTTGTG
194 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCA-GCAAAGGGGGAC-GGGTCGATCCCCGGCTTGCG
* * * * * *
14531930 CATTATGCCTCTCCAGCCAGCTCAGCGCCCGTACGCTCA-TTTTGTGGGTTGACTTAG
257 CATTATGCCTCTCCGGCCGGCTTAGTGCCCGCACGCT-AGTTTTATGGGTTGACTTAG
14531987 GCATACGGAGTTCA-TCCACAGTCTAAG
1 GCATACGGAGTTCATTCC-CAGTCTAAG
14532014 CATACGGAGT
Statistics
Matches: 545, Mismatches: 101, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
313 1 0.00
314 74 0.14
315 57 0.10
316 179 0.33
317 232 0.43
318 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (313 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACAGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCC
GTATGCCCGTTTCTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
CGAGGGTTGTGGCAGCGGGACCGGCAGCAGCAAAGGGGGACGGGTCGATCCCCGGCTTGCGCATT
ATGCCTCTCCGGCCGGCTTAGTGCCCGCACGCTAGTTTTATGGGTTGACTTAG
Found at i:14532016 original size:26 final size:26
Alignment explanation
Indices: 14531987--14532039 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14531977 GTTGACTTAG
14531987 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
14532013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14532039 G
1 G
14532040 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14538273 original size:26 final size:26
Alignment explanation
Indices: 14538237--14538288 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14538227 TTGACTTAGA
* *
14538237 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGCCTAAG
*
14538263 CATACAGAGTTCATTCCCAGCCTAAG
1 CATACAGAGTTCATCCCCAGCCTAAG
14538289 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGCCTAAG
Found at i:14538748 original size:157 final size:158
Alignment explanation
Indices: 14538347--14538767 Score: 417
Period size: 159 Copynumber: 2.7 Consensus size: 158
14538337 GGGACCGGAC
* * * * *
14538347 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAG-TGCCCACAC-ACCCGTTTCATGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCT-CCCGCACGA-TCGTTTCGTGG
* * * ***
14538410 GTTGGCTTAGGCATATGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCAGGGGTTGTGGCAGC
64 GTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAGGGGTTGCCACAGC
*
14538475 GGGATCGACAGCATGCAAAGGGAGATCGGGT
129 AGGATCGACAGCATG-AAAGGGAGATCGGGT
* * * * * * *
14538506 CGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCAT-GTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCCGCACG-ATCGTTTCGTGGG
* *** * * * *
14538570 TTGACTTAGGCATACAAAGTTCATTCC-TAGTCTAA-CATCGAACCAGACC-GAGTGTTGCCATA
65 TTGGCTTAGGCATATGGAGTTCATTCCAT-GTCTAAGC-CCCAACCAGACCAG-GGGTTGCCACA
* * *
14538632 GCAGGATCGATAGCATG-TAGGGGGA-CTGGGT
127 GCAGGATCGACAGCATGAAAGGGAGATC-GGGT
* * *
14538663 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCTGCATGTTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCCGCACGATCGTTTCGTGGGT
14538728 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCA
66 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCA
14538768 GACGGATCGA
Statistics
Matches: 206, Mismatches: 46, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 93 0.45
158 5 0.02
159 105 0.51
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (158 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCCGCACGATCGTTTCGTGGGT
TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAGGGGTTGCCACAGCAG
GATCGACAGCATGAAAGGGAGATCGGGT
Found at i:14538792 original size:157 final size:156
Alignment explanation
Indices: 14538347--14538794 Score: 419
Period size: 157 Copynumber: 2.8 Consensus size: 156
14538337 GGGACCGGAC
* * * * *
14538347 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAG-TGCCCACAC-ACCCGTTTCATGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCT-CCCGCACGA-TCGTTTCGTGG
* * *
14538410 GTTGGCTTAGGCATATGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCAGGGGTTGTGGCAGC
64 GTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGACGGACGA-GGGTT-TGGCAGC
*
14538475 GGGATCGACAGCATGCAAAGGGAGATCGGGT
127 AGGATCGACAGCATG-AAAGGGAGATCGGGT
* * * * * * *
14538506 CGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCAT-GTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCCGCACG-ATCGTTTCGTGGG
* *** ** * * *
14538570 TTGACTTAGGCATACAAAGTTCATTCC-TAGTCTAA-CATC-GAACCAGACCGAGTG-TTGCCAT
65 TTGGCTTAGGCATATGGAGTTCATTCCAT-GTCTAAGCCCCAG-A-CGGA-CGAGGGTTTGGC--
* * *
14538631 AGCAGGATCGATAGCATG-TAGGGGGA-CTGGGT
124 AGCAGGATCGACAGCATGAAAGGGAGATC-GGGT
* * *
14538663 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCTGCATGTTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCCGCACGATCGTTTCGTGGGT
14538728 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGACGGATCGAGGGTTATGGCAGCAG
66 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGACGGA-CGAGGGTT-TGGCAGCAG
14538793 GA
129 GA
14538795 CCAACAGTGG
Statistics
Matches: 225, Mismatches: 48, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
156 2 0.01
157 110 0.49
158 9 0.04
159 101 0.45
160 2 0.01
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (156 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCTCCCGCACGATCGTTTCGTGGGT
TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGACGGACGAGGGTTTGGCAGCAGGA
TCGACAGCATGAAAGGGAGATCGGGT
Found at i:14539328 original size:671 final size:668
Alignment explanation
Indices: 14538033--14539499 Score: 1818
Period size: 671 Copynumber: 2.2 Consensus size: 668
14538023 GAGCCTGTGA
* *
14538033 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCTAG
1 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
** * * * * *
14538098 CTGGACTGAGGGTTGTGGCAATAGAACCGGCAGCGAGATCGACAGCATGCAGAGGGGGATCGGGC
66 C-GGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGA-GGGGATCAGGC
** *
14538163 TGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCTGCACGCTAATTTCGTGGGT
129 TGATCCCCGGCTCACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTAATTTCGTGGGT
*
14538228 TGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCA
194 TGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTACCAGCCTAAGATCA
* * *
14538293 GACCAGACCAAGGGTTGTGGCAGTAGGATTAGCAGCACGCAGGGGGGACCGGACCGATCCTCGGC
259 GACCAGACCAAGGGTTGCGGCAGTAGGATCAGCAGCACGCAAGGGGGACCGGACCGATCCTCGGC
* * ** *
14538358 TTGCGCATTCTGCCTCTCCGACTGGTTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAGGCA
324 TTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACACCCGTTTCATAGGTTGGCTTAGGCA
*
14538423 TATGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCAGGGGTTGTGGCAGCGGGATCGACAGCA
389 TAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCAGGGGTTGTGGCAGCGGGATCGACAGCA
* * * *
14538488 TGCAAAGGGAGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
454 -GCAAAGGGAGATCGAGCCAATCCCCGACTTCTGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
* * *
14538553 AACGCATGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAACATCGAACCAGAC
518 AACGCATGTTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAACATCGAACCAGAC
* * * * * *
14538618 CGAGTGTTGCCATAGCAGGATCGATAGCATGTAGGGGGACTGGGTCGATCCCCGGCTTGCGCATT
583 CGAGTGTTGCCATAGCACGATCGACAGCACGCAGGGGGACCGGGTCGATCCCCGACTTGCGCATT
*
14538683 CTGCCTCTCCGACT-GGCTGAG
648 CTGCCTCTCC-ACTCGACTGAG
* * * *
14538704 CTCCTGCATGTTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAG
1 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * *
14538769 ACGGA-TCGAGGGTTATGGCAGCAGGACCAACAGTGGGATCGATAGCACGTAGAGGGCGATCAGG
66 -CGGACT-GAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGG-GATCAGG
* * * * * * *
14538833 CTGATCCTCGGCTCATGTATTATGCCTCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGG
128 CTGATCCCCGGCTCACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTAATTTCGTGGG
** * * *
14538898 TTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTGAGATC
193 TTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTACCAGCCTAAGATC
* ** * * *
14538963 -GAACCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAAGGGGGACCAGG-TCGATCC-C
258 AG-ACCAGACCAAGGGTTGCGGCAGTAGGATCAGCAGCACGCAAGGGGGACC-GGACCGATCCTC
* * ** * ** *
14539025 TGGCTTGTGCATTCTGCCTCTCTGACCGGCTGAGCACCCGTACGCTTGTTTCGTAGGTTGGCTTA
321 -GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACACCCGTTTCATAGGTTGGCTTA
* *
14539090 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC-GAGGGTTGTGGCAGCGGGA-CTG
385 GGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCAG-GGGTTGTGGCAGCGGGATC-G
* * * * * *
14539153 GCAGCA-CACAGGGGGGATCGAGCCAATCCTCGACTTCTGCATTATGCCTCTTCGACTGGCTCAG
448 ACAGCAGCA-AAGGGAGATCGAGCCAATCCCCGACTTCTGCATTATGCCTCTCCGACCGGCTCAG
* ** * * *
14539217 TGCCCGAACGC-TCGTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATTGG
512 CGCCCGAACGCAT-GTTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAACATCGA
** ** * * * *
14539281 ACTGGACCGAGTGTTGCGGTAGCACTATTGACAGCACGCAGGGGGGACCGGGTTGGTCCCCGACT
576 ACCAGACCGAGTGTTGCCATAGCACGATCGACAGCACGCA-GGGGGACCGGGTCGATCCCCGACT
*
14539346 TGCGCATTCTGCCTCTCCAGTCGACTGAG
640 TGCGCATTCTGCCTCTCCACTCGACTGAG
* * * *
14539375 CACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAAGCCCCAG
1 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
14539440 TCGAACTGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACATAGAGGGGATC
66 -CGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGATC
14539500 CGCACGCTTG
Statistics
Matches: 672, Mismatches: 111, Indels: 27
0.83 0.14 0.03
Matches are distributed among these distances:
669 3 0.00
670 143 0.21
671 522 0.78
672 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (668 bp):
CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
CGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGATCAGGCTG
ATCCCCGGCTCACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTAATTTCGTGGGTTG
ACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTACCAGCCTAAGATCAGA
CCAGACCAAGGGTTGCGGCAGTAGGATCAGCAGCACGCAAGGGGGACCGGACCGATCCTCGGCTT
GCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACACCCGTTTCATAGGTTGGCTTAGGCATA
GGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCAGGGGTTGTGGCAGCGGGATCGACAGCAGC
AAAGGGAGATCGAGCCAATCCCCGACTTCTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAAC
GCATGTTTCATGGGTTGACTTAGACATACAAAGTTCATTCCCAGTCTAACATCGAACCAGACCGA
GTGTTGCCATAGCACGATCGACAGCACGCAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTG
CCTCTCCACTCGACTGAG
Found at i:14539564 original size:26 final size:26
Alignment explanation
Indices: 14539528--14539578 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14539518 GTTGACTTAG
14539528 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
14539554 GCATATGGAGTTGATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
14539579 TGATCGTACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14540466 original size:26 final size:26
Alignment explanation
Indices: 14540436--14540488 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14540426 GTTGACTTAG
*
14540436 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14540462 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14540488 G
1 G
14540489 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14540815 original size:159 final size:158
Alignment explanation
Indices: 14540462--14540826 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 158
14540452 CCCAGTCTAA
* * * *
14540462 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGTAGGATCGATA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGACCGATA
* * * * * * *
14540527 GCACGTAGGGGGGACTGGGCCGTTCCCCAGCTTGCGCATTCTGCATCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCACATTATGCATCTCCGATCGGCTCAGCACC
* **
14540592 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGAACGCCCGTTTCATGGGTTCACTTAG
* * * * ** * *
14540620 GCGTAGGGAGTTCATT-CCATTTCTAGGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGCAGGACCGA
* * * *
14540683 TAGCACGCAGAGTGGGA-TCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGATCGGCTCAG
64 TAGCACGCAG-GGGGGACT-GGGCCGATCCCCAGCTTGCACATTATGCATCTCCGATCGGCTCAG
** * ** **
14540747 CACTTGAATGCTTGTTTTGTGGGTTCACTTAG
127 CACCCGAACGCCCGTTTCATGGGTTCACTTAG
*
14540779 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
14540827 AACCAGCAGG
Statistics
Matches: 161, Mismatches: 40, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.02
158 57 0.35
159 98 0.61
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGACCGATA
GCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGCACATTATGCATCTCCGATCGGCTCAGCACC
CGAACGCCCGTTTCATGGGTTCACTTAG
Found at i:14540967 original size:26 final size:26
Alignment explanation
Indices: 14540938--14540991 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
14540928 GTTGGCTTAG
*
14540938 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14540964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14540990 GC
1 GC
14540992 CTCAGCCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14542284 original size:26 final size:26
Alignment explanation
Indices: 14542255--14542307 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14542245 GTTGACTTAG
14542255 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
14542281 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14542307 G
1 G
14542308 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14542578 original size:159 final size:159
Alignment explanation
Indices: 14542352--14542783 Score: 567
Period size: 159 Copynumber: 2.7 Consensus size: 159
14542342 AACAGCACTT
* * * * * * * ** *
14542352 AGGGGGACTGGGTCGATCCTCGGTTTACGCATTCTACCTTTCCGGTCGATTGAGCGCCCGCATGC
1 AGGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAAGC
* * * * * * *
14542417 CCGTTTCGTGGGTTCGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCGAGG
66 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCAACG
* *
14542482 GTTGTGGCAGCGGGACCGGCAGCACGCAG
131 GTTGTGGCAGCGAGACCAGCAGCACGCAG
* * * * *
14542511 AGGGGGACGGGGTCGATCCCCGGCTTGCTCATTATGCCTCTCCGGCCGGCTGAGCGCCCCCACGC
1 AGGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAAGC
*
14542576 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCTAGCCGAACCAACG
66 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCAACG
*
14542641 GTTGTGGCAGCGAGACTAGCAGCACGCAG
131 GTTGTGGCAGCGAGACCAGCAGCACGCAG
* * * *
14542670 AGGGGGACTGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCCCGCAAGC
1 AGGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAAGC
* * *
14542735 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
14542784 ATACAGAGTT
Statistics
Matches: 236, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
159 236 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
AGGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAAGC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCAACG
GTTGTGGCAGCGAGACCAGCAGCACGCAG
Found at i:14542786 original size:26 final size:26
Alignment explanation
Indices: 14542756--14542808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14542746 GTTGGCTTAG
*
14542756 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14542782 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14542808 G
1 G
14542809 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14543479 original size:26 final size:26
Alignment explanation
Indices: 14543443--14543495 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14543433 GTTGACTTAG
14543443 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14543469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14543495 G
1 G
14543496 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14543656 original size:26 final size:26
Alignment explanation
Indices: 14543627--14543679 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14543617 TTTGGCGTAG
14543627 GCATACAGAGATCATT-CCATGTCTAA
1 GCATACAGAGATCATTCCCA-GTCTAA
* *
14543653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
14543679 G
1 G
14543680 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:14545453 original size:26 final size:26
Alignment explanation
Indices: 14545423--14545475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14545413 GTTGACTTAG
*
14545423 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
14545449 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14545475 G
1 G
14545476 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14546342 original size:26 final size:26
Alignment explanation
Indices: 14546292--14546344 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14546282 GTTGGCTTAG
* *
14546292 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATATCTAA
14546318 GCATATAGAGTTCATTCCCA-ATCTAA
1 GCATATAGAGTTCATT-CCATATCTAA
14546344 G
1 G
14546345 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATATCTAA
Found at i:14546594 original size:514 final size:512
Alignment explanation
Indices: 14545871--14547050 Score: 1356
Period size: 513 Copynumber: 2.3 Consensus size: 512
14545861 GTTGTGGCAG
* * * * * *
14545871 CAGGATCAACAACACGCAGGGAGGA-CGAGCCGATCCCTGGCTTACGCATTCTACCTCT-TCGGC
1 CAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCT-GG-
* ** * * *
14545934 CAGCTGAGCACCCGCATGCCTATTTCACGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTA
64 CAGATGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTA
* * * * * ** *
14545999 AGCCCCAGCCGGAATGAGGGATATGGCAGTGGGATCGGTAGCACGCAGAGGGGGACCTGGCCGAC
129 AGCCCCAGCCGGACTGAGGGTTGTGGAAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCCGAC
* * * *
14546064 CCTTGGCTTACGCATTATGCCTCTTCGACTGGCTCGGTGCCCAAACGCTCGTTTCA-TGCATTGA
194 CCTCGGCTTACGCATTATGCCTCTCCGACTGGCTCAGTGCCCAAACGCTCATTT-AGTGCATTGA
* * ** ** **
14546128 CTGAGGCATATAGAGTTCATTCCCAGTCTAAAATTGGATTGGA-CTGAGGGTTGTGGCAGCAGGA
258 CTGAGGCATACAGAGTACATTCCCAGTCTAAAATCAGACCGGATC-GAGGGTTGCAGCAGCAGGA
* * ** ** * * *
14546192 TCGACGGCTCGCA-AGGGGTGACCGGGTTGGTCCCC-TTATTACTCATTCTACCTCTCCGGTCGA
322 TCGACAGCACGCAGA-GGG-GACCAAGCCGATCCCCGAT-TTACTCATTCTACCTCTCCGGCCGA
* * * *
14546255 CTGCGCGCCCGCACGCTCGTTTCG-TGAGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
384 CTGAGCGCCCGCACACTAGTTTCGTTG-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
14546319 CATATAGAGTTCATTCCCAATCTAAGATC-GAATCGGA-TAGAGGGTTACGACAGTAGGACCAGC
448 CATACAGAGTTCATTCCCAATCTAAGATCAG-ACCGGACCA-AGGGTTACGACAGTAGGACCAGC
*
14546382 AG
511 AA
**
14546384 CAGGATCGGTAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGTC
1 CAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGG-C
* ** *
14546449 GGATGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCGTAGCGAGTTCATTCCATGTCTAA
65 AGATGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAA
* *
14546514 GCCCCAACCGGACTGAGGGTTGTGGAAGTGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATC
130 GCCCCAGCCGGACTGAGGGTTGTGGAAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCCGA-C
* ** * **
14546579 CC-CGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGTGCCTGAATGCTCATTTAGTGGGTTGAC
194 CCTCGGCTTACGCATTATGCCTCTCCGACTGGCTCAGTGCCCAAACGCTCATTTAGTGCATTGAC
* * * *
14546643 TTAGGCATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATC
259 TGAGGCATACAGAGTACATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTGCAGCAGCAGGATC
* * * * * * * *
14546708 GATAGCACGCAGAGGGGACCAAGCCGATCCTCGATTTGCTCATTCTGCCTTTTCGGCCGATTTAG
324 GACAGCACGCAGAGGGGACCAAGCCGATCCCCGATTTACTCATTCTACCTCTCCGGCCGACTGAG
*
14546773 CGCCCGCACACTAGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
389 CGCCCGCACACTAGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
*
14546838 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGTAGGACCAGCAA
454 GAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGACAGTAGGACCAGCAA
* * * * * *
14546897 CAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCATGCACATTCTGCCTCTCTGGCT
1 CAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCA
* * * *
14546962 GACTGACCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGGAGTTCATTCCATGTCTA
66 GA-TGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGC-GAGTTCATTCCATGTCTA
* *
14547026 AGCCCCAGCCAGACCGAGGGTTGTG
129 AGCCCCAGCCGGACTGAGGGTTGTG
14547051 ACAACAGGAC
Statistics
Matches: 559, Mismatches: 96, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
512 4 0.01
513 291 0.52
514 258 0.46
515 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (512 bp):
CAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCA
GATGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAG
CCCCAGCCGGACTGAGGGTTGTGGAAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCCGACCC
TCGGCTTACGCATTATGCCTCTCCGACTGGCTCAGTGCCCAAACGCTCATTTAGTGCATTGACTG
AGGCATACAGAGTACATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGA
CAGCACGCAGAGGGGACCAAGCCGATCCCCGATTTACTCATTCTACCTCTCCGGCCGACTGAGCG
CCCGCACACTAGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
GTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTACGACAGTAGGACCAGCAA
Found at i:14546692 original size:159 final size:159
Alignment explanation
Indices: 14546394--14546737 Score: 353
Period size: 159 Copynumber: 2.2 Consensus size: 159
14546384 CAGGATCGGT
* * * * * *
14546394 AGCACGCAG-GGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGATGAGTG
1 AGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGCTCGGATCAGTG
* * * * * *
14546458 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCGTAGCGAGTTCATTCCATGTCTAAGCCCCAACC
66 CCCGAATGCCCATTTCATGGGTTGACTTAGGCATAGCGAGTACATTCCATGTCTAAGCACCAACC
** *
14546523 GGACTGAGGGTTGTGGAAGTGGGACCGAC
131 GGACTGAGGGTTGCAGAAGTAGGACCGAC
* *
14546552 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACT-GGCTCAGT
1 AGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG-CTCGGATCAGT
* * *
14546616 GCCTGAATGCTCATTT-AGTGGGTTGACTTAGGCATA-CGGAGTACATTCCCA-GTCTAAG-ATC
65 GCCCGAATGCCCATTTCA-TGGGTTGACTTAGGCATAGC-GAGTACATT-CCATGTCTAAGCACC
* * *
14546677 AGACCGGA-TCGAGGGTTGCAGCAGTAGGATCGAT
127 A-ACCGGACT-GAGGGTTGCAGAAGTAGGACCGAC
* *
14546711 AGCACGCAGA-GGGGACCAAGCCGATCC
1 AGCACGCAGAGGGGGACCGAGTCGATCC
14546738 TCGATTTGCT
Statistics
Matches: 153, Mismatches: 26, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
158 28 0.18
159 121 0.79
160 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGCTCGGATCAGTG
CCCGAATGCCCATTTCATGGGTTGACTTAGGCATAGCGAGTACATTCCATGTCTAAGCACCAACC
GGACTGAGGGTTGCAGAAGTAGGACCGAC
Found at i:14546834 original size:26 final size:26
Alignment explanation
Indices: 14546805--14546857 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14546795 GTTGGCTTAG
14546805 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14546831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14546857 G
1 G
14546858 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14547214 original size:26 final size:26
Alignment explanation
Indices: 14547185--14547237 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14547175 GTTGAGTTAG
14547185 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14547211 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14547237 G
1 G
14547238 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14547900 original size:26 final size:26
Alignment explanation
Indices: 14547870--14547922 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14547860 GTTGAGTTAG
*
14547870 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
***
14547896 GCATATGCAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
14547922 G
1 G
14547923 ATAGAACTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:14548447 original size:26 final size:26
Alignment explanation
Indices: 14548418--14548470 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14548408 GTTCACTTAG
14548418 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14548444 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14548470 G
1 G
14548471 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14548809 original size:25 final size:26
Alignment explanation
Indices: 14548758--14548812 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14548748 TGGGTTGGCT
*
14548758 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATCCCATGTC
14548784 TAAGCATACGG-GTTCATACCCA-GTC
1 TAAGCATACGGAGTTCAT-CCCATGTC
14548809 TAAG
1 TAAG
14548813 AGTTTGAGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCATGTC
Found at i:14549519 original size:26 final size:26
Alignment explanation
Indices: 14549483--14549535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14549473 GTTGACTTAG
14549483 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
14549509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
14549535 G
1 G
14549536 ATTAGACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:14549860 original size:26 final size:26
Alignment explanation
Indices: 14549824--14549876 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14549814 GTTGGCTTAG
14549824 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
14549850 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14549876 G
1 G
14549877 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:14550582 original size:26 final size:26
Alignment explanation
Indices: 14550546--14550598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14550536 GTTGACTTAG
14550546 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14550572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14550598 G
1 G
14550599 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14550759 original size:26 final size:26
Alignment explanation
Indices: 14550730--14550782 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14550720 GTTGGCTTAG
* * *
14550730 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14550756 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14550782 G
1 G
14550783 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:14551000 original size:197 final size:195
Alignment explanation
Indices: 14550643--14551148 Score: 663
Period size: 197 Copynumber: 2.6 Consensus size: 195
14550633 GACAGCACGT
* ** * *
14550643 AGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
1 AGGGCGGATCGGGTCGATCCTCGATTTGCGCATTCTGCCTCTCC-AGCCGCTGAGCGCCCGCACG
* * *
14550708 CTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTC
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
* * * *
14550773 CAAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGACCAGTAGC-AGGATTGGCAGCAC
130 CAAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGCAGGACCAGCA-CTAGGATTGGCAGCAC
14550837 AC
194 AC
* * * * * *
14550839 AGGGTGGATCGAGTCGATCCTCGATTTGCGCATTCTACCTTTCCAGCCAGCTGATCGCCCGTACG
1 AGGGCGGATCGGGTCGATCCTCGATTTGCGCATTCTGCCTCTCCAGCC-GCTGAGCGCCCGCACG
*
14550904 CTCGTTTCGTGGGGTTGGCTTAGGCATATGGTGTTCATTCCATGTCTAAGCATACAGAGTTCATT
65 CTCGTTTCGT-GGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCATACAGAGTTCATT
* * * *
14550969 CCCAGTCTAAGATCAGGCCAAACCAAGGGTTGTGACAGCAGGACTAGCACTAGGATTGGCAGCAC
129 CCAAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGCAGGACCAGCACTAGGATTGGCAGCAC
*
14551034 GC
194 AC
* * * * * *
14551036 AGGGCGGATCGGGCCGATCCCCGATTTGCACATTTTGCCTCTCCAACCGACTGAGCGCCTGCACG
1 AGGGCGGATCGGGTCGATCCTCGATTTGCGCATTCTGCCTCTCCAGCCG-CTGAGCGCCCGCACG
* * *
14551101 CTCATTTCATGGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAA
14551149 ACCCCAGCCG
Statistics
Matches: 267, Mismatches: 39, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
195 2 0.01
196 99 0.37
197 166 0.62
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (195 bp):
AGGGCGGATCGGGTCGATCCTCGATTTGCGCATTCTGCCTCTCCAGCCGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
AAGTCTAAGATCAGACCAAACCAAGGGTTGCGACAGCAGGACCAGCACTAGGATTGGCAGCACAC
Found at i:14551324 original size:26 final size:26
Alignment explanation
Indices: 14551294--14551346 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14551284 GTTGACCTAG
14551294 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14551320 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14551346 G
1 G
14551347 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14552042 original size:26 final size:26
Alignment explanation
Indices: 14552013--14552065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14552003 GTTGACTTAG
14552013 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
14552039 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14552065 G
1 G
14552066 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14559785 original size:26 final size:26
Alignment explanation
Indices: 14559756--14559805 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14559746 GTTGACTTAG
14559756 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14559782 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
14559806 GAGATCGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14560263 original size:158 final size:158
Alignment explanation
Indices: 14559782--14560274 Score: 492
Period size: 159 Copynumber: 3.1 Consensus size: 158
14559772 CCCAGTCTAA
* * *
14559782 GCATACGGAGTTCATTCCCAGTCTGAGATCGAACCGGACCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGTAGGATCGACA
* * *
14559847 GCACGCAGCGGGGGACCAGG-TCGATCCCTGGCTTGCGCATTCTTCCTCTCTGGCCGGCTGAGCG
66 GCACGCAG-GGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCG
* *
14559911 CCCGTACGCTTGTTTCGTGGGTTGGCTTAG
129 CCCGAACGCTTGTTTCATGGGTTGGCTTAG
* * ** * * * * *
14559941 GCATATGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACT-GGACCGAGGGTTGCGGCAGTAGGATCGA
* * ** * * * * *
14560004 CAGCACGCAGGGGGGGATCGAGCCAATCCTCGGCTT-CTGCATTATGCCTCTCTGACCGGCTCAG
64 CAGCACGCA-GGGGGGACCGGGCTGATCCCCGGCTTGC-GCATTCTACCTCTCTGGCCGGCTGAG
* *
14560068 TGCCCGAACGCTTGTTTCATGGGTTGACTTAG
127 CGCCCGAACGCTTGTTTCATGGGTTGGCTTAG
* * * * ** *
14560100 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGTGTTGCGGCAGCACTATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * *
14560165 GCACGTAGGGGGGACCGGGCTGGTCCCCGACTTGCGCATTCTACCTCT-TCGGTCGGCTGAGCAC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCT-GGCCGGCTGAGCGC
* **
14560229 CCGCACGCTCATTTCATGGGTTGGCTTAG
130 CCGAACGCTTGTTTCATGGGTTGGCTTAG
*
14560258 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
14560275 TATGTCTAAG
Statistics
Matches: 262, Mismatches: 63, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 85 0.32
159 169 0.65
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCC
CGAACGCTTGTTTCATGGGTTGGCTTAG
Found at i:14561304 original size:26 final size:26
Alignment explanation
Indices: 14561274--14561326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14561264 GTTGACTTAG
*
14561274 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
14561300 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
14561326 G
1 G
14561327 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:14561813 original size:26 final size:26
Alignment explanation
Indices: 14561777--14561829 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14561767 TTGGCTTAGA
*
14561777 CATACAGAGTTTATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
*
14561803 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
14561829 C
1 C
14561830 CTCAGCCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:14562420 original size:26 final size:26
Alignment explanation
Indices: 14562371--14562423 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14562361 GTTGGCTTAG
*
14562371 GCATACAGAGTTTAATCCATGTCTAA
1 GCATACAGAGTTCAATCCATGTCTAA
*
14562397 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCAAT-CCATGTCTAA
14562423 G
1 G
14562424 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCATGTCTAA
Found at i:14563131 original size:26 final size:26
Alignment explanation
Indices: 14563095--14563147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14563085 GTTGACTTAG
14563095 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14563121 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14563147 G
1 G
14563148 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14563622 original size:159 final size:159
Alignment explanation
Indices: 14563241--14563623 Score: 464
Period size: 159 Copynumber: 2.4 Consensus size: 159
14563231 CTCCGATCGA
* * ** * *
14563241 CTGAGCGCCCGCATGCCCGTTTCGTGGGTTCACTTAGCCATAGGGAGTTCATTCCATGTCTAAAC
1 CTGAGCGCCCGCAAGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGC
* * * * *
14563306 CCTAGCCGGACCGAGGATTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACGGGGCCGATCCC
66 CCCAGCCGGAACGAGGATTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACGGAGCCGATCCC
*
14563371 CGGCTTGCGCATTATACCTCTCTGGCCGG
131 CGGCTTGCACATTATACCTCTCTGGCCGG
* * *
14563400 CTGAGCGCCCCCACGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCTATGTCTAAGC
1 CTGAGCGCCCGCAAGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGC
* * * * * *
14563465 CCCA-TCTGAACGAACGG-TTATGGTAGCGGGATCGACAGCACGTAGAGGGGGACTGAGCCGATC
66 CCCAGCCGGAACG-A-GGATTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACGGAGCCGATC
* * * * *
14563528 CTCGGCTTGCACATTTTGCCTTTCTGGTCGG
129 CCCGGCTTGCACATTATACCTCTCTGGCCGG
* * * *
14563559 CTGAGCGCCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCAAGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGC
14563624 ATACAGAGTT
Statistics
Matches: 190, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 5 0.03
159 183 0.96
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CTGAGCGCCCGCAAGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCGGAACGAGGATTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACGGAGCCGATCCC
CGGCTTGCACATTATACCTCTCTGGCCGG
Found at i:14563626 original size:26 final size:26
Alignment explanation
Indices: 14563596--14563648 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14563586 GTTGGCTTAG
*
14563596 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
14563622 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
14563648 G
1 G
14563649 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:14564355 original size:26 final size:26
Alignment explanation
Indices: 14564319--14564371 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14564309 GTTGACTTAG
14564319 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14564345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14564371 G
1 G
14564372 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14564533 original size:26 final size:26
Alignment explanation
Indices: 14564503--14564555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14564493 GTTGGCTTAG
14564503 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14564529 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14564555 G
1 G
14564556 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14565105 original size:159 final size:157
Alignment explanation
Indices: 14564738--14565237 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 157
14564728 CCCAGTCTAA
* * * * *
14564738 GCATACGAAGTTCATTCCA-ATCTAAGAT-CGAACCGGACCGAGGGT-TGCACAGTAGGATCTAG
1 GCATACGAAGTTCATTCCATGTCTAAG-TCCCAACCGGACCGAGGGTATG-GCAGTAGGACCGA-
* * * * * *
14564800 AGCATGCAG-GGGGGATCGGGCCGATCCCTGGCTTGC-TCATTCTACCTCTCTGGCCGGCTGAGC
63 AGCACGCAGAGGGGGATTGGGTCGATCCCTGGCTTGCGT-ATTCTGCCTCTCCGGCCGGCTAAGC
* * * *
14564863 ACCCGCACGCCCATTTCGTGGGTTGGCTTAG
127 GCCCGAACGCTCATTTCGTGGGTTGACTTAG
* * ** * *
14564894 GCATAAGGAGTTCATTTGATGTCTAAGCCCCAACCGGACCGAGGGTAGTGGCAGTGGGACCGACA
1 GCATACGAAGTTCATTCCATGTCTAAGTCCCAACCGGACCGAGGGTA-TGGCAGTAGGACCGA-A
* * *
14564959 GCACGCAGAGAGGGATTGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCAGTCGGCTAAGCGC
64 GCACGCAGAGGGGGATTGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGCCGGCTAAGCGC
* *
14565024 CCGTACGCTCGTTTCGTGGGTTGACTTAG
129 CCGAACGCTCATTTCGTGGGTTGACTTAG
* ** *
14565053 GCATACGAAATTCATTCCATGTCTAAGTCCCAACCGGACCGAGGGTTATGGCAACAGG-CAGGAA
1 GCATACGAAGTTCATTCCATGTCTAAGTCCCAACCGGACCGAGGG-TATGGCAGTAGGAC-CGAA
* * * ** * * * *
14565117 GCACGCAGAGGGGGACTGGGTCGATCCCCGACTTATGCATTATGCCTCTCCGGCCGACTCAA-TG
64 GCACGCAGAGGGGGATTGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGCCGGCT-AAGCG
* * *
14565181 ACCGAATGCTCATTTCATGGGTTGACTTAG
128 CCCGAACGCTCATTTCGTGGGTTGACTTAG
14565211 GCATACGAAGTTCATTCC-TAGTCTAAG
1 GCATACGAAGTTCATTCCAT-GTCTAAG
14565238 CACGCAATGT
Statistics
Matches: 280, Mismatches: 54, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
156 15 0.05
157 23 0.08
158 117 0.42
159 122 0.44
160 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGTCCCAACCGGACCGAGGGTATGGCAGTAGGACCGAAGC
ACGCAGAGGGGGATTGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGCCGGCTAAGCGCCC
GAACGCTCATTTCGTGGGTTGACTTAG
Found at i:14565213 original size:158 final size:159
Alignment explanation
Indices: 14564869--14565238 Score: 408
Period size: 158 Copynumber: 2.3 Consensus size: 159
14564859 GAGCACCCGC
* * * * **
14564869 ACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTTGATGTCTAAGCCCCAACCGGACC
1 ACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACC
** * * * * * *
14564934 GAGGGTAGTGGCAGTGGGACCGACAGCACGCAGAGAGGGATTGGGTCGATCCCTGGCTTGCGTAT
66 GAGGGTAGTGGCACAGGCACCGACAGCACGCAGAGAGGGACTGGGTCGATCCCCGACTTACGCAT
* * * * *
14564999 TCTGCCTCTCCAGTCGGCTAAGCGCCCGT
131 TATGCCTCTCCAGCCGACTAAGCGACCGA
* * *
14565028 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCATGTCTAAGTCCCAACCGGACC
1 ACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACC
* * *
14565093 GAGGGTTA-TGGCAACAGGCA-GGA-AGCACGCAGAGGGGGACTGGGTCGATCCCCGACTTATGC
66 GAGGG-TAGTGGC-ACAGGCACCGACAGCACGCAGAGAGGGACTGGGTCGATCCCCGACTTACGC
* *
14565155 ATTATGCCTCTCCGGCCGACTCAA-TGACCGA
129 ATTATGCCTCTCCAGCCGACT-AAGCGACCGA
* *
14565186 ATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGC
1 ACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAT-GTCTAAGC
14565239 ACGCAATGTT
Statistics
Matches: 175, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 99 0.57
159 69 0.39
160 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
ACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACC
GAGGGTAGTGGCACAGGCACCGACAGCACGCAGAGAGGGACTGGGTCGATCCCCGACTTACGCAT
TATGCCTCTCCAGCCGACTAAGCGACCGA
Found at i:14565545 original size:159 final size:159
Alignment explanation
Indices: 14565271--14565741 Score: 436
Period size: 159 Copynumber: 3.0 Consensus size: 159
14565261 AAGATAGGAT
** * * ** ** *
14565271 CGGACCGAGGGTTACGGCAGCAGGATCGGTAGCATACAGGGGGGACCAGGTCGAT-CCTCGGCTT
1 CGGACCGAGGGTTGTGACAGCAGGATAGACAGCACGCAGGGGGGACCAGGCCGATCCCT-GGCTT
* *
14565335 GCGCATTCTGCCT-TTCCGGCTGGCTGAGCACCCGTACGC-CTGTTTCATGGGTTGGCTTAGGCA
65 GCGCATTCTGCCTCTT-CGGCTGGCTGAGAACCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCA
* * * *
14565398 TAGGGAGTTTAGTCCATGTCTAAGCCCCAG-C
128 TACGGAGTTCAATCCATGTCTAAGCACCAGAC
* * * * *
14565429 TGGACTGAGGGTTGTGGCAGC-GAGACTAG-TAGCACGTAGAGGGGGACCAGGCCGATCCCTGGC
1 CGGACCGAGGGTTGTGACAGCAG-GA-TAGACAGCACGCAG-GGGGGACCAGGCCGATCCCTGGC
* * * ** * * * *
14565492 TTGCGCATTATGCCTCTTCGACTGGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTATGAA
63 TTGCGCATTCTGCCTCTTCGGCTGGCTGAGAACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* * * *
14565557 TATGGAGTTCATTCC-TAGTCTAAG-ATCGGAC
128 TACGGAGTTCAATCCAT-GTCTAAGCACCAGAC
* * * * * *
14565588 CGGACCGAGTGTTGTGATAGCAGGATCGACAGCACGCAGGGGGGACCCGGCTGATCCCCGGCTTG
1 CGGACCGAGGGTTGTGACAGCAGGATAGACAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTG
* * *
14565653 TGCATTCTGCCTCTTCGGCTGGCTGAGCACCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
66 CGCATTCTGCCTCTTCGGCTGGCTGAG-AACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
14565718 CGGAGTTCAATCCATGTCTAAGCA
130 CGGAGTTCAATCCATGTCTAAGCA
14565742 TACGTAATTC
Statistics
Matches: 251, Mismatches: 49, Indels: 24
0.77 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 77 0.31
159 164 0.65
160 9 0.04
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGACAGCAGGATAGACAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTG
CGCATTCTGCCTCTTCGGCTGGCTGAGAACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
GGAGTTCAATCCATGTCTAAGCACCAGAC
Found at i:14566466 original size:26 final size:26
Alignment explanation
Indices: 14566436--14566488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14566426 GTTGACTTAG
*
14566436 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14566462 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14566488 G
1 G
14566489 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14567354 original size:26 final size:26
Alignment explanation
Indices: 14567304--14567356 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14567294 GTTGGCTTAG
*
14567304 GCATACGGAATTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATATCTAA
*
14567330 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAATTCATT-CCATATCTAA
14567356 G
1 G
14567357 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATATCTAA
Found at i:14567558 original size:514 final size:512
Alignment explanation
Indices: 14566908--14568044 Score: 1370
Period size: 514 Copynumber: 2.2 Consensus size: 512
14566898 GCAGGGAGGA
* * * * * *
14566908 CGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAACACCCGCATGCCTGTTTCG
1 CGAGTCGATCCCCGGCTTACGCATTCTACCTCTCTG-GCAGATGAGCACCCGCATGCCAGTTTCG
* * *
14566973 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAATGAGGGTTATGGC
65 TGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCGGAATGAGGGTTATGGA
* ** *
14567038 AGTGGGATCGGTAGCACACAGAGGAGGACCGGGCCGA-CCCTTGGCTTGCGCATTATGCCTCTCC
130 AGTGGGACCGACAGCACACAGAGGAGGACCGGGCCGATCCC-CGGCTTGCGCATTATGCCTCTCC
* * *
14567102 GACTGGCTCAGCGCCCGAACGCTCGTTTCA-TGCATTGACTGAGGCATACAGAGTTCATTCCCAG
194 GACTGGCTCAGCGCCCGAACGCTCATTT-AGTGCATTGACTGAGGCATACAGAGTACATTCCAAG
** * * * * *
14567166 TCTAAAATCGGATTGGA-CTGAGGGTTGTGGTAGCAGGATAGACAGCTCGCAAGGGGGGACCG-G
258 TCTAAAATCAAACTGGATC-GAGGGTTGCGGCAGCAGGATAGACAGCACGC-AGAGGGGACCGAG
* * ** * * *
14567229 GCTGGTCCCCGCA-TTACGCATTCTACCTCTCCGGTCAACTGCGCGCCCGCACGCTCGTTTCG-T
321 TC-GATCCCCG-ATTTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGCACACTAGTTTCGTT
14567292 GAGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
384 G-GTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
* * * **
14567357 ATCGGATCAGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGTAGCACACAGAGGGGAC
448 ATCAGACCAGACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCGACAGCACACAGAGGGGAC
* * ** * *
14567422 CGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGATGAGTGCCCGCATGCCCGTTTCC
1 CGAGTCGATCCCCGGCTTACGCATTCTACCTCTCTGG-CAGATGAGCACCCGCATGCCAGTTTCG
* * * * *
14567487 TGGGTTGGCTTAGGCGTAGCGAGTTCATTCCATGTCTAAGCCCTAATCGGACTGAGGGTTGTGGA
65 TGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCGGAATGAGGGTTATGGA
* * *
14567552 AGTGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
130 AGTGGGACCGACAGCACACAGAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG
* * ** * *
14567617 GCTGGCTCAGCGCCCGAATGCTCATTTAGTGGGTTGACTTAGGCATACGGAGTACATTCCAAGTC
195 ACTGGCTCAGCGCCCGAACGCTCATTTAGTGCATTGACTGAGGCATACAGAGTACATTCCAAGTC
* * *
14567682 TAAGATCAAACTGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGACCGAGTCGA
260 TAAAATCAAACTGGATCGAGGGTTGCGGCAGCAGGATAGACAGCACGCAGAGGGGACCGAGTCGA
* * * * * * * *
14567747 TCCTCGATTTGCTCATTCTACCTTTTCGACCGATTTAGCGCCCGCACACTAGTTTCGTTGGTTGG
325 TCCCCGATTTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGCACACTAGTTTCGTTGGTTGG
* *
14567812 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
390 CTTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* * * *** * *
14567877 CAGACTGAGGGTTACGGCAGTAGGACCAGCAACAGGATCGACAGCATGTAGGGGGGAT
455 CAGACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCGACAGCACACAGAGGGGAC
* * * * * * * *
14567935 CGGGTCGATCCCCGGCATGCACATTCTACCTCTCTGGCTGACTGAGCACCCGTACGCTAGTTTCG
1 CGAGTCGATCCCCGGCTTACGCATTCTACCTCTCTGGCAGA-TGAGCACCCGCATGCCAGTTTCG
14568000 TGGGTTGGCTTAGGCATA-CGGAGTTCATTCCATGTCTAAGCCCCA
65 TGGGTTGGCTTAGGCATAGC-GAGTTCATTCCATGTCTAAGCCCCA
14568045 GCCAGACCGA
Statistics
Matches: 524, Mismatches: 90, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
512 5 0.01
513 256 0.49
514 259 0.49
515 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (512 bp):
CGAGTCGATCCCCGGCTTACGCATTCTACCTCTCTGGCAGATGAGCACCCGCATGCCAGTTTCGT
GGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCGGAATGAGGGTTATGGAA
GTGGGACCGACAGCACACAGAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA
CTGGCTCAGCGCCCGAACGCTCATTTAGTGCATTGACTGAGGCATACAGAGTACATTCCAAGTCT
AAAATCAAACTGGATCGAGGGTTGCGGCAGCAGGATAGACAGCACGCAGAGGGGACCGAGTCGAT
CCCCGATTTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGCACACTAGTTTCGTTGGTTGGC
TTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACC
AGACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCGACAGCACACAGAGGGGAC
Found at i:14567705 original size:159 final size:158
Alignment explanation
Indices: 14567406--14567749 Score: 381
Period size: 159 Copynumber: 2.2 Consensus size: 158
14567396 CAGGATCGGT
* * * * *
14567406 AGCACACAGAGGGGACCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGATGAGTGC
1 AGCACGCAGAGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGATCAGCGC
* * * * * * * * *
14567471 CCGCATGCCCGTTTCCTGGGTTGGCTTAGGCGTAGCGAGTTCATTCCATGTCTAAGCCCTAATCG
66 CCGAATGCCCATTTACTGGGTTGACTTAGGCATAGCGAGTACATTCCAAGTCTAAGACCAAATCG
* **
14567536 GACTGAGGGTTGTGGAAGTGGGACCGAC
131 GACTGAGGGTTGCGGAAGCAGGACCGAC
* * *
14567564 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGG-CTGGCTCAGC
1 AGCACGCAGA-GGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTC-GGATCAGC
* * *
14567628 GCCCGAATGCTCATTTAGTGGGTTGACTTAGGCATA-CGGAGTACATTCCAAGTCTAAGATCAAA
64 GCCCGAATGCCCATTTACTGGGTTGACTTAGGCATAGC-GAGTACATTCCAAGTCTAAGACCAAA
* * *
14567692 -CTGGA-TCGAGGGTTGCGGCAGCAGGATCGAT
128 TC-GGACT-GAGGGTTGCGGAAGCAGGACCGAC
14567723 AGCACGCAGAGGGGACCGAGTCGATCC
1 AGCACGCAGAGGGGACCGAGTCGATCC
14567750 TCGATTTGCT
Statistics
Matches: 154, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 29 0.19
159 125 0.81
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (158 bp):
AGCACGCAGAGGGGACCGAGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGATCAGCGC
CCGAATGCCCATTTACTGGGTTGACTTAGGCATAGCGAGTACATTCCAAGTCTAAGACCAAATCG
GACTGAGGGTTGCGGAAGCAGGACCGAC
Found at i:14567846 original size:26 final size:26
Alignment explanation
Indices: 14567817--14567869 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14567807 GTTGGCTTAG
14567817 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14567843 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14567869 G
1 G
14567870 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14568059 original size:513 final size:513
Alignment explanation
Indices: 14566908--14568062 Score: 1363
Period size: 513 Copynumber: 2.2 Consensus size: 513
14566898 GCAGGGAGGA
* * * * ** * * * * *
14566908 CGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAACACCCGCATGCCTGTTTCG
1 CGAGTCGATCCCCGGCATACACATTCTACCTCTCTGGTCGGATGAGCACCCGCACGCCAGTTTCG
* * *
14566973 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAATGAGGGTTATGGC
66 TGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGA
* ** *
14567038 AGTGGGATCGGTAGCACACAGAGGAGGACCGGGCCGACCCTTGGCTTGCGCATTATGCCTCTCCG
130 AGTGGGACCGACAGCACACAGAGGAGGACCGGGCCGACCCTCGGCTTGCGCATTATGCCTCTCCG
* * *
14567103 ACTGGCTCAGCGCCCGAACGCTCGTTTCATGCATTGACTGAGGCATACAGAGTTCATTCCCAGTC
195 ACTGGCTCAGCGCCCGAACGCTCATTTCATGCATTGACTGAGGCATACAGAGTACATTCCAAGTC
** * * * * *
14567168 TAAAATCGGATTGGACTGAGGGTTGTGGTAGCAGGATAGACAGCTCGCAAGGGGGGACCGGGCTG
260 TAAAATCAAACTGGACTGAGGGTTGCGGCAGCAGGATAGACAGCACGCAAGAGGGGACCGGGCTG
* ** * * *
14567233 GTCCCCGCATTACGCATTCTACCTCTCCGGTCAACTGCGCGCCCGCACGCTCGTTTCGTGAGTTG
325 ATCCCCGCATTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGCACACTAGTTTCGTGAGTTG
*
14567298 GCTTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGA
390 GCTTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * **
14567363 TCAGACCGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGGTAGCACACAGAGGGGAC
455 CCAGACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCGACAGCACACAGAGGGGAC
* * * ** * * *
14567422 CGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGATGAGTGCCCGCATGCCCGTTTCC
1 CGAGTCGATCCCCGGCATACACATTCTACCTCTCTGGTCGGATGAGCACCCGCACGCCAGTTTCG
* * **
14567487 TGGGTTGGCTTAGGCGTAGCGAGTTCATTCCATGTCTAAGCCCTAATCGGACTGAGGGTTGTGGA
66 TGGGTTGGCTTAGGCATAG-GAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGA
* * *
14567552 AGTGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCC-CGGCTTGCGCATTATGCCTCTCC
130 AGTGGGACCGACAGCACACAGAGGAGGACCGGGCCGA-CCCTCGGCTTGCGCATTATGCCTCTCC
* * ** * *
14567616 GGCTGGCTCAGCGCCCGAATGCTCATTT-AGTGGGTTGACTTAGGCATACGGAGTACATTCCAAG
194 GACTGGCTCAGCGCCCGAACGCTCATTTCA-TGCATTGACTGAGGCATACAGAGTACATTCCAAG
* * * *
14567680 TCTAAGATCAAACTGGA-TCGAGGGTTGCGGCAGCAGGATCGATAGCACGC-AGAGGGGACCGAG
258 TCTAAAATCAAACTGGACT-GAGGGTTGCGGCAGCAGGATAGACAGCACGCAAGAGGGGACCGGG
* * * * * * * *
14567743 -TCGATCCTCG-ATTTGCTCATTCTACCTTTTCGACCGATTTAGCGCCCGCACACTAGTTTCGTT
322 CT-GATCCCCGCA-TTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGCACACTAGTTTCG-T
* *
14567806 G-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
384 GAGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
* * * *** * *
14567870 ATCAGACCAGACTGAGGGTTACGGCAGTAGGACCAGCAACAGGATCGACAGCATGTAGGGGGGAT
449 ATCAGACCAGACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCGACAGCACACAGAGGGGAC
* * * * *
14567935 CGGGTCGATCCCCGGCATGCACATTCTACCTCTCTGG-CTGACTGAGCACCCGTACGCTAGTTTC
1 CGAGTCGATCCCCGGCATACACATTCTACCTCTCTGGTCGGA-TGAGCACCCGCACGCCAGTTTC
* *
14567999 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
65 GTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTG
14568063 ACAGCAGGAC
Statistics
Matches: 538, Mismatches: 94, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
512 5 0.01
513 273 0.51
514 257 0.48
515 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (513 bp):
CGAGTCGATCCCCGGCATACACATTCTACCTCTCTGGTCGGATGAGCACCCGCACGCCAGTTTCG
TGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGAA
GTGGGACCGACAGCACACAGAGGAGGACCGGGCCGACCCTCGGCTTGCGCATTATGCCTCTCCGA
CTGGCTCAGCGCCCGAACGCTCATTTCATGCATTGACTGAGGCATACAGAGTACATTCCAAGTCT
AAAATCAAACTGGACTGAGGGTTGCGGCAGCAGGATAGACAGCACGCAAGAGGGGACCGGGCTGA
TCCCCGCATTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGCACACTAGTTTCGTGAGTTGG
CTTAGGCATACGGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
CAGACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCGACAGCACACAGAGGGGAC
Found at i:14568226 original size:26 final size:26
Alignment explanation
Indices: 14568197--14568249 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14568187 GTTGAGTTAG
14568197 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14568223 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14568249 G
1 G
14568250 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14568686 original size:686 final size:685
Alignment explanation
Indices: 14567799--14569116 Score: 2078
Period size: 685 Copynumber: 1.9 Consensus size: 685
14567789 CGCACACTAG
* **
14567799 TTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAG
* * *
14567864 TCTAAGATCAGACCAGACTGAGGGTTACGGCAGTAGGACCAGCAACAGGATCGACAGCATGTAGG
66 TCTAAGATCAGACCAGACTGAGGGTTACGACAGTAGGACCAGCAACAGGATCGACAGCACGCAGG
* * *
14567929 GGGGATCGGGTCGATCCCCGGCATGCACATTCTACCTCTCTGGCTGACTGAGCACCCGTACGCTA
131 GGGGATCGGGTCGATCCCCGGCATGCACATTCTACCTCTCCGACTGACTGAGCACCCGCACGCTA
14567994 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
196 GTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* *
14568059 TGTGACAGCAGGACCAGCAGTGGGATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTT
260 TGTGACAGCAGGACCAGCAATGGAATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTT
* * * *
14568124 ACGTATTATGCCTCTCCGGCTGGCCTCTCCGACCTCTTGAGCGCCTGCATGCTCGTTTCGTGGGT
325 ACGCATTATGCCTCTCCAGCCGGCCTCTCCGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGT
* *
14568189 TGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCTAGTCTAAGATCG
390 TGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCG
* * *
14568254 AACTGGATCGAAGGTTACGGTAGCAGGATCATCAACACGCAGAGGGGATCGGGTCGATCCCCAGG
455 AACTGGATCGAAGGTTACGGTAGCAGGATCATCAACACGCAGAGGGGACCAGGTCGATCCCCAGC
** ** *
14568319 TTGCGCATTCTGCCTCTCTGGTCGGGTGAGTGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCA
520 TTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCA
14568384 TAAGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGATTGTGGCAGCGAGATCGGCATCA
585 TAAGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGATTGTGGCAGCGAGATCGGCATCA
14568449 CACAGAGAGGGACCAGGTCAATCCTCGGCTTGCTCA
650 CACAGAGAGGGACCAGGTCAATCCTCGGCTTGCTCA
*
14568485 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACAAAGTTCATTCCCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAG
* * * * *
14568550 TCTAAGATCAGATCGGACTGAGGGTTATGACAGTAGGACCAGCAACAGGATCGATAGCACGCATG
66 TCTAAGATCAGACCAGACTGAGGGTTACGACAGTAGGACCAGCAACAGGATCGACAGCACGCAGG
* * * * *
14568615 GGGGATTGGGTCGATCCCCGGCATGCACATTCTGCCTCTCCGACTGACTGAGTACCCGCATGCTC
131 GGGGATCGGGTCGATCCCCGGCATGCACATTCTACCTCTCCGACTGACTGAGCACCCGCACGCTA
* *
14568680 GTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTATGCCCCAGCTAGACCGAGGGTT
196 GTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * ** * *
14568745 GTGGCAGCAGGACCGGCAATGGAATTGGCAGCACGTAGAAGGGGATTGGGCTAATCCCTGGCTTA
261 GTGACAGCAGGACCAGCAATGGAATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTTA
* *
14568810 CGCATTATGCCTCTCCAGCCGGCCTTTCTGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGTT
326 CGCATTATGCCTCTCCAGCCGGCCTCTCCGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGTT
14568875 GAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGA
391 GAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGA
* * * * ** *
14568940 ACTGGATCGAGGGTTGCTGTAGCAGGATCGTCAATGCGTAGAGGGGACCAGGTCGATCCCCAGCT
456 ACTGGATCGAAGGTTACGGTAGCAGGATCATCAACACGCAGAGGGGACCAGGTCGATCCCCAGCT
* * *
14569005 TGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTTGCTTAGGCAT
521 TGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCAT
* * * *
14569070 AGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
586 AAGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGATTGTGG
14569117 TAGTGGGACC
Statistics
Matches: 571, Mismatches: 61, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
685 371 0.65
686 200 0.35
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (685 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAG
TCTAAGATCAGACCAGACTGAGGGTTACGACAGTAGGACCAGCAACAGGATCGACAGCACGCAGG
GGGGATCGGGTCGATCCCCGGCATGCACATTCTACCTCTCCGACTGACTGAGCACCCGCACGCTA
GTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGACAGCAGGACCAGCAATGGAATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTTA
CGCATTATGCCTCTCCAGCCGGCCTCTCCGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGTT
GAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGA
ACTGGATCGAAGGTTACGGTAGCAGGATCATCAACACGCAGAGGGGACCAGGTCGATCCCCAGCT
TGCGCATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCAT
AAGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGATTGTGGCAGCGAGATCGGCATCAC
ACAGAGAGGGACCAGGTCAATCCTCGGCTTGCTCA
Found at i:14568911 original size:26 final size:26
Alignment explanation
Indices: 14568882--14568934 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14568872 GTTGAGTTAG
*
14568882 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14568908 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14568934 G
1 G
14568935 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14569396 original size:685 final size:680
Alignment explanation
Indices: 14567812--14569410 Score: 1912
Period size: 685 Copynumber: 2.3 Consensus size: 680
14567802 CGTTGGTTGG
* ** * **
14567812 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACGAAACTCATTTCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
14567877 CAGACTGAGGGTTACGGCAGTAGGACCAGCAACAGGATCGACAGCATGTAGGGGGGATCGGGTCG
66 CGGACCGAGGGTTA-TG-A-CAGGA-CAG--ACAGGATCGACAGCACGCAGGGGGGATCGGGTCG
* *
14567942 ATCCCCGGCATGCACATTCTACCTC-TCTGGCTGACTGAGCACCCGTACGCTAGTTTCGTGGGTT
125 ATCCCCGGCATGCACATTCTACCTCTTC-GGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTT
14568006 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGG
189 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGG
* * *
14568071 ACCAGCAGTGGGATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTTACGTATTATGCC
254 ACCAGCAATGGAATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTTACGCATTATGCC
* * *
14568136 TCTCCGGCTGGCCTCTCCGACCTCTTGAGCGCCTGCATGCTCGTTTCGTGGGTTGAGTTAGGCAT
319 TCTCCAGCCGGCCTCTCCGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGAGTTAGGCAT
* *
14568201 ACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCTAGTCTAAGATCGAACTGGATCGAA
384 ACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGAACTGGATCGAA
* * *
14568266 GGTTACGGTAGCAGGATCATCAACACGCAGAGGGGATCGGGTCGATCCCCAGGTTGCGCATTCTG
449 GGTTACGGTAGCAGGATCATCAACACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTG
** ** *
14568331 CCTCTCTGGTCGGGTGAGTGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCATAAGGAGCTCAT
514 CCTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCATAAGGAGCTCAT
* * *
14568396 TCCATGTCTAAGCCCCAGTCGGACCGAAGATTGTGGCAGCGAGATCGGCATCACACAGAGAGGGA
579 TCCATGTCTAAGCCCCAGTCGGACCGAAGATTGTGGCAGCGAGACCGACAGCACACAGAGAGGGA
* * * * * *
14568461 CCAGGTCAATCCTCGGCTTGCTCATTTCGTGGGTTGG
644 CCAGGCCAATCCTCGGCTTGCGCATTTCGTCGCTCGC
* ** *
14568498 CTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGAT
1 CTTAGGCATACGAAACTCATTTCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
14568563 CGGACTGAGGGTTATGACAGTAGGACCAGCAACAGGATCGATAGCACGCATGGGGGATTGGGTCG
66 CGGACCGAGGGTTATGAC---AGGA-CAG--ACAGGATCGACAGCACGCAGGGGGGATCGGGTCG
* * * * *
14568628 ATCCCCGGCATGCACATTCTGCCTCTCCGACTGACTGAGTACCCGCATGCTCGTTTCGTGGGTTG
125 ATCCCCGGCATGCACATTCTACCTCTTCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * *
14568693 GCTTAGGCATAC-GAGTTCATTCCATGTCTATGCCCCAGCTAGACCGAGGGTTGTGGCAGCAGGA
190 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGGA
* * ** * *
14568757 CCGGCAATGGAATTGGCAGCACGTAGAAGGGGATTGGGCTAATCCCTGGCTTACGCATTATGCCT
255 CCAGCAATGGAATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTTACGCATTATGCCT
* *
14568822 CTCCAGCCGGCCTTTCTGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGAGTTAGGCATA
320 CTCCAGCCGGCCTCTCCGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGAGTTAGGCATA
*
14568887 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGAACTGGATCGAGG
385 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGAACTGGATCGAAG
* * * ** *
14568952 GTTGCTGTAGCAGGATCGTCAATGCGTAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGC
450 GTTACGGTAGCAGGATCATCAACACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGC
* * * * *
14569017 CTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATT
515 CTCTCTGACCGACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCATAAGGAGCTCATT
* * * * * *** *
14569082 CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGTGGGACCGACAGCATGTAGAGGGGGAC
580 CCATGTCTAAGCCCCAGTCGGACCGAAGATTGTGGCAGCGAGACCGACAGCACACAGAGAGGGAC
*
14569147 C-GAGCCAATCCTCGGCTTGCGCATTAT-GTCTCTCCGAC
645 CAG-GCCAATCCTCGGCTTGCGCATT-TCGTCGCT-CG-C
* * * * *
14569185 CAGTTCAGCGC-T-CGAACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCCTTCCCAGTC
1 C--TT-AG-GCATACGAA-ACTCATTTCAT--G-T--C-TAAGCATACAAAGTTCATTCCCAGTC
* * *
14569248 TAAGATC-GAACCGGACCGAGGG-T-TG-C-GG-TAG-CTGGATCGACAGCACGCAGAGGGGGAC
55 TAAGATCAG-ACCGGACCGAGGGTTATGACAGGACAGACAGGATCGACAGCACGCAG-GGGGGAT
* * * * * * * *
14569306 CGGGCCGATCCCC-ACTTACGCATTCTACCTCTTCGGCTGGCTGAGCACCCACACGCTCGTTTCA
118 CGGGTCGATCCCCGGCATGCACATTCTACCTCTTCGGCTGACTGAGCACCCGCACGCTCGTTTCG
*
14569370 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGC
183 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14569411 ATACAGAGTT
Statistics
Matches: 783, Mismatches: 108, Indels: 45
0.84 0.12 0.05
Matches are distributed among these distances:
684 76 0.10
685 452 0.58
686 183 0.23
687 4 0.01
689 7 0.01
690 10 0.01
691 2 0.00
692 1 0.00
693 2 0.00
694 2 0.00
695 3 0.00
696 41 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (680 bp):
CTTAGGCATACGAAACTCATTTCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGAC
CGGACCGAGGGTTATGACAGGACAGACAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCC
GGCATGCACATTCTACCTCTTCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCAGCA
ATGGAATCGGCAGCACGTAGAAGGGGATCAGGCTAATCCCCGACTTACGCATTATGCCTCTCCAG
CCGGCCTCTCCGACCTCCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGT
TCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGAACTGGATCGAAGGTTACG
GTAGCAGGATCATCAACACGCAGAGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCT
GACCGACTGAGCGCCCGCACGCCCGTTTCGTAGGTTGGATTAGGCATAAGGAGCTCATTCCATGT
CTAAGCCCCAGTCGGACCGAAGATTGTGGCAGCGAGACCGACAGCACACAGAGAGGGACCAGGCC
AATCCTCGGCTTGCGCATTTCGTCGCTCGC
Found at i:14569534 original size:184 final size:183
Alignment explanation
Indices: 14569225--14569593 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 183
14569215 GTTGACTTAG
* *
14569225 GCATACAGAGTTCCTTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCTGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCTGGATCGACA
* *
14569290 GCACGCAGAGGGGGACCGGGCCGATCCCCACTTACGCATTCTACCTCTTCGGCTGGCTGAGCACC
66 ACACGCAGAGGGGGACCGGGCCGATCCCCACTTACGCATTCTACCTCTCCGGCTGGCTGAGCACC
* * *
14569355 CACAC-GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAA
131 CACACACCT-GTTCCATGGGTTCGCTTAGGCATA-GGAGTTCATTCCATGTCCAA
* * **
14569409 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCTGATCGAGGGTTGCGGCAG-TAGGATCGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCT-GGATCGAC
* * * * * * *
14569473 AACACGCA-TGGGGGACTGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCC-GATCGGCTGAGC
65 AACACGCAGAGGGGGACCGGGCCGATCCCC-ACTTACGCATTCTACCTCTCCGGCT-GGCTGAGC
* *
14569536 GCCCACACACCTGTTCCATGGGTTCGCTTAGGCATAGGAGTTCATTCCATGTCTAA
128 ACCCACACACCTGTTCCATGGGTTCGCTTAGGCATAGGAGTTCATTCCATGTCCAA
14569592 GC
1 GC
14569594 CCCAATCGGA
Statistics
Matches: 161, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
183 42 0.26
184 117 0.73
185 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCTGGATCGACA
ACACGCAGAGGGGGACCGGGCCGATCCCCACTTACGCATTCTACCTCTCCGGCTGGCTGAGCACC
CACACACCTGTTCCATGGGTTCGCTTAGGCATAGGAGTTCATTCCATGTCCAA
Found at i:14569723 original size:26 final size:26
Alignment explanation
Indices: 14569687--14569739 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14569677 GTTGGCTTAG
14569687 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCGA-GTCTAA
14569713 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
14569739 G
1 G
14569740 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:14570450 original size:26 final size:26
Alignment explanation
Indices: 14570421--14570473 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14570411 GTTGACTTAG
14570421 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* * *
14570447 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
14570473 G
1 G
14570474 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:14570811 original size:26 final size:26
Alignment explanation
Indices: 14570759--14570814 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14570749 TGGGTTGGCT
*
14570759 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATACCATGTC
14570785 TAAGCATACGGAGTTCATACC-TAGTC
1 TAAGCATACGGAGTTCATACCAT-GTC
14570811 TAAG
1 TAAG
14570815 AGTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATACCATGTC
Found at i:14571528 original size:25 final size:26
Alignment explanation
Indices: 14571481--14571533 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
14571471 CGGGTTGACT
14571481 TAGGCATACGGAGTTAATCCCCGGTC
1 TAGGCATACGGAGTTAATCCCCGGTC
14571507 TAGGCATACGGA-TTAATCCCCGGTC
1 TAGGCATACGGAGTTAATCCCCGGTC
14571532 TA
1 TA
14571534 AGATCAGACC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGGCATACGGAGTTAATCCCCGGTC
Found at i:14571863 original size:26 final size:26
Alignment explanation
Indices: 14571826--14571878 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14571816 GTTGGCTTAG
*
14571826 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGCAGTTCATTCCCA-GTCTAA
14571852 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATATGCAGTTCATTCCCAGTCTAA
14571878 G
1 G
14571879 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGCAGTTCATTCCCAGTCTAA
Done.