Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 111 of 402
Found at i:14572578 original size:26 final size:26
Alignment explanation
Indices: 14572541--14572593 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14572531 GTTGACTTAG
*
14572541 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
14572567 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14572593 G
1 G
14572594 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14572754 original size:26 final size:26
Alignment explanation
Indices: 14572725--14572777 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14572715 GTTGGCTTAG
* *
14572725 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14572751 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14572777 G
1 G
14572778 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14572776 original size:184 final size:184
Alignment explanation
Indices: 14572467--14573500 Score: 786
Period size: 184 Copynumber: 5.6 Consensus size: 184
14572457 TACCACCTGT
* * * * ** * *
14572467 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGCTCATTTCGTGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGG
*
14572532 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGA
66 TTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGA
* * *
14572595 TTAGACCGGATCGAGGGTTGCGGCAACAAGATCGATAGCACGTAGGGGGGATCGGG
129 TCAGACCGGACCGAGGGTTGCGGCAACAAGATCGATAGCACGCAGGGGGGATCGGG
* *
14572651 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGG
* *
14572716 TTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
66 TTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * * *
14572781 AGACCAGATCGAGGGTTGCGACTGCAGGACCAGTAGCAGGATTGGCAGCACACAGGGGGGATCGA
131 AGACCGGACCGAGGGTTGCG---GCA--ACAAG-ATC--GA-T---AGCACGCAGGGGGGATCGG
14572846 G
184 G
* * * * * *
14572847 TCGATCCTCGATTTACGCATTCTGCCTCTCC-AGCCGGCTGACCACCCGCACGCTTGTTTCATGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCACCCGCACGCTCGTTTCAT-G
* *
14572911 GGTTGGCTTAGGCATACTGTGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
64 GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * * *
14572976 TCAGACCAGACCAAGGGTTGCGACAACAGGACCAGCACCAGGATTGGCAGCACGCAGGGGGGATC
129 TCAGACCGGACCGAGGGTTGCGGCAAC---A--AG-ATC--GA-T---AGCACGCAGGGGGGATC
14573041 GGG
182 GGG
* * ** * * * *
14573044 CCGATCCCCGATTTGCATATTCTGCTTCTCC-AGTCGGCTGATCGCCTGCACGCTCGTTTCATGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCACCCGCACGCTCGTTTCATGG
* * ** ** * *
14573108 GTTGGCTTAGGCATAC-GATGTTCATTCCATGTCTAA--A-CCCCAG-TCAGACCGAGGGT-TAT
65 GTTGGCTTAGGCATACGGA-GTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCA--GTCTAA
* * * * * *
14573167 GGT-AG-CAGGA-C------T--GGCAACAGGATCGACAACACGCAGAGGGGG-TCCGAG
127 GATCAGACCGGACCGAGGGTTGCGGCAACAAGATCGATAGCACGCAG-GGGGGAT-CGGG
* * * * * *
14573215 TTGATCCTCGACTTGCACATTATGCCTCTCCGGTCGGCTGAGCACCCGTACGCTCGTTTCATGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGG
* * * * *
14573280 TTGACCTAGGCATACGGAGTTCATCCCCA-GTCTAAGCGTACGGAGATCATTCCCAGTCTAAGAT
66 TTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * * * *
14573344 CAGATCGGACCGAAGGTTGCGGCAGCAGGATTGATAGCACGTAGGGGGGATCGGG
130 CAGACCGGACCGAGGGTTGCGGCAACAAGATCGATAGCACGCAGGGGGGATCGGG
* * * * ** * * * * *
14573399 -CGGATTCGCTG-CTTGTGCATTCTACCTCTCCGGCCGGCTGAGCACCCACACACCCATTTTATG
1 TC-GA-TCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATG
* *
14573462 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
64 GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGC
14573501 CCCAGTCAGA
Statistics
Matches: 685, Mismatches: 116, Indels: 98
0.76 0.13 0.11
Matches are distributed among these distances:
170 9 0.01
171 85 0.12
172 5 0.01
173 2 0.00
174 9 0.01
175 8 0.01
176 5 0.01
177 2 0.00
179 1 0.00
182 5 0.01
183 7 0.01
184 216 0.32
185 24 0.04
187 3 0.00
189 4 0.01
190 3 0.00
191 3 0.00
192 12 0.02
193 8 0.01
194 5 0.01
195 2 0.00
196 103 0.15
197 164 0.24
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
TCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGG
TTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTGCGGCAACAAGATCGATAGCACGCAGGGGGGATCGGG
Found at i:14572952 original size:26 final size:26
Alignment explanation
Indices: 14572922--14572974 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14572912 GTTGGCTTAG
* *
14572922 GCATACTGTGTTCA-TCCCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14572948 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14572974 G
1 G
14572975 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14572981 original size:197 final size:195
Alignment explanation
Indices: 14572638--14573143 Score: 735
Period size: 197 Copynumber: 2.6 Consensus size: 195
14572628 GATAGCACGT
** *
14572638 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GATCGGCTGAGCGCCCGCAC
1 AGGGGGGATCGGGTCGATCCCCGATTTGCGCATTCTGCCTCTCCAG-TCGGCTGACCGCCCGCAC
* *
14572702 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATT
65 GCTCGTTTCATGGGTTGGCTTAGGCATAC-GTGTTCATTCCATGTCTAAGCATACAGAGTTCATT
* * ** * *
14572767 CCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACTGCAGGACCAGTAGCAGGATTGGCAGCAC
129 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAACAGGACCAGCACCAGGATTGGCAGCAC
14572832 AC
194 AC
* * * * *
14572834 AGGGGGGATCGAGTCGATCCTCGATTTACGCATTCTGCCTCTCCAGCCGGCTGACCACCCGCACG
1 AGGGGGGATCGGGTCGATCCCCGATTTGCGCATTCTGCCTCTCCAGTCGGCTGACCGCCCGCACG
* *
14572899 CTTGTTTCATGGGGTTGGCTTAGGCATACTGTGTTCATCCCATGTCTAAGCATACAGAGTTCATT
66 CTCGTTTCAT-GGGTTGGCTTAGGCATAC-GTGTTCATTCCATGTCTAAGCATACAGAGTTCATT
14572964 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAACAGGACCAGCACCAGGATTGGCAGCAC
129 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAACAGGACCAGCACCAGGATTGGCAGCAC
*
14573029 GC
194 AC
* ** * * *
14573031 AGGGGGGATCGGGCCGATCCCCGATTTGCATATTCTGCTTCTCCAGTCGGCTGATCGCCTGCACG
1 AGGGGGGATCGGGTCGATCCCCGATTTGCGCATTCTGCCTCTCCAGTCGGCTGACCGCCCGCACG
14573096 CTCGTTTCATGGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAA
66 CTCGTTTCATGGGTTGGCTTAGGCATACG-TGTTCATTCCATGTCTAA
14573144 ACCCCAGTCA
Statistics
Matches: 274, Mismatches: 33, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
195 1 0.00
196 99 0.36
197 174 0.64
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (195 bp):
AGGGGGGATCGGGTCGATCCCCGATTTGCGCATTCTGCCTCTCCAGTCGGCTGACCGCCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACGTGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAACAGGACCAGCACCAGGATTGGCAGCACAC
Found at i:14573322 original size:26 final size:26
Alignment explanation
Indices: 14573292--14573341 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14573282 GACCTAGGCA
*
14573292 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGATCATCCCCAGTCTAAGCG
*
14573318 TACGGAGATCATTCCCAGTCTAAG
1 TACGGAGATCATCCCCAGTCTAAG
14573342 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (26 bp):
TACGGAGATCATCCCCAGTCTAAGCG
Found at i:14573826 original size:26 final size:25
Alignment explanation
Indices: 14573790--14573841 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14573780 GTTGGCTTAG
14573790 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
* *
14573816 GCATATGGAGTTCGTTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
14573841 G
1 G
14573842 ATCGGACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:14574232 original size:26 final size:26
Alignment explanation
Indices: 14574195--14574247 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14574185 GTTGCCTTAG
*
14574195 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* **
14574221 GCATACAAAGTTGATTTCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
14574247 G
1 G
14574248 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:14577414 original size:26 final size:26
Alignment explanation
Indices: 14577378--14577430 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14577368 CCGATCCGAT
14577378 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
14577404 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14577430 C
1 C
14577431 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14577925 original size:26 final size:26
Alignment explanation
Indices: 14577889--14577941 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14577879 CTGGTTCGAT
14577889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14577915 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14577941 C
1 C
14577942 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14578097 original size:11 final size:11
Alignment explanation
Indices: 14578083--14578115 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14578073 TAGTTAGGCA
*
14578083 CTCCGACGATG
1 CTCCGATGATG
14578094 CTCCGATGATG
1 CTCCGATGATG
14578105 CTCCGATGATG
1 CTCCGATGATG
14578116 GTACCCGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.27, T:0.24
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:14578764 original size:26 final size:26
Alignment explanation
Indices: 14578735--14578786 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14578725 TCTGGTCTGA
*
14578735 TCTTAAAC-TGGGAATGAACTCTGTAT
1 TCTTAAACAT-GGAATGAACTCCGTAT
*
14578761 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAAACATGGAATGAACTCCGTAT
14578787 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (26 bp):
TCTTAAACATGGAATGAACTCCGTAT
Found at i:14579267 original size:26 final size:26
Alignment explanation
Indices: 14579231--14579286 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
14579221 TCGATCCGAT
*
14579231 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * * *
14579257 CTTAGACTGGGGATTAACTCCGTCTG
1 CTTAGACTGGGAATGAACTCCATATG
14579283 CTTA
1 CTTA
14579287 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14580885 original size:25 final size:26
Alignment explanation
Indices: 14580839--14580890 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14580829 GCTTCAAAAT
14580839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14580865 CTTAGAC-GGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14580890 C
1 C
14580891 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14581558 original size:26 final size:26
Alignment explanation
Indices: 14581522--14581574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14581512 CTGATTTGAT
14581522 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14581548 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14581574 C
1 C
14581575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14581773 original size:26 final size:25
Alignment explanation
Indices: 14581732--14581783 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14581722 CTGGTCTGAT
14581732 CTTAGACTAGAATGAACTCCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
* *
14581757 CTTAGACATGGAATGAATTCCGTATG
1 CTTAGAC-TAGAATGAACTCCGTATG
14581783 C
1 C
14581784 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:14582059 original size:159 final size:159
Alignment explanation
Indices: 14581757--14582249 Score: 374
Period size: 159 Copynumber: 3.1 Consensus size: 159
14581747 ACTCCGTATG
* * *
14581757 CTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCTATGAAACGAAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAAGCATGCGAGCGCTCAG
* * * * * *
14581822 CCGATCGGAGAGGTAGAATACGGAAGTCGGGGACCGACCCGGTCGCCCCCTGCGTGCTAATGATC
66 CCGATCGGAGAGGCAGAATACGCAAGCCGGGGACCGACCCAGTCGCCCCCTACGTGCTAACGATC
*
14581887 CTGCTGCCAAACCCTTGGTCTGGTCCGAT
131 CCGCTGCCAAACCCTTGGTCTGGTCCGAT
* * *
14581916 CTTAGAC-TAGGAATGAACTT-CGTATGCCTAAGTCAACCCATGAAACG-AGCATGCGAGTGCTG
1 CTTAGACAT-GGAATGAA-TTCCGTATGCCTAAGCCAACCCATGAAACGAAGCATGCGAGCGCTC
* * * * * *
14581978 AGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTC-CCCCTCTACGTGTTACCG
64 AGCCGATCGGAGAGGCAGAATACGCAAGCCGGGGACCGACCCAGTCGCCCC-CTACGTGCTAACG
* * * * ** **
14582042 GTCCCGCTGCCACAACCCTCGATCGGGTTGGGG
128 ATCCCGCTGCCA-AACCCTTGGTCTGGTCCGAT
* * * * * * * * * *
14582075 CTTAGACATGGAATGAACTCCCTATGCCTAGGCCATCCCACGAAATG-GGCGTGCGGGCGCTCAA
1 CTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAAGCATGCGAGCGCTCAG
* * * * * ** * * * **
14582139 CCGACCAGAGAGGTAGAATGCACAAGCCAAGGATC-AGCCCGGTC-CCCCCTTCGTGCTGTCGAT
66 CCGATCGGAGAGGCAGAATACGCAAGCCGGGGACCGA-CCCAGTCGCCCCCTACGTGCTAACGAT
* * * *
14582202 CCTGCTGTCGC-AACCCTCGGTCCGGTCCAAT
130 CCCGCTG-C-CAAACCCTTGGTCTGGTCCGAT
14582233 CTTAGAC-TGGGAATGAA
1 CTTAGACAT-GGAATGAA
14582250 CTTCTTATGC
Statistics
Matches: 262, Mismatches: 62, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 115 0.44
159 138 0.53
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAAGCATGCGAGCGCTCAG
CCGATCGGAGAGGCAGAATACGCAAGCCGGGGACCGACCCAGTCGCCCCCTACGTGCTAACGATC
CCGCTGCCAAACCCTTGGTCTGGTCCGAT
Found at i:14582284 original size:26 final size:26
Alignment explanation
Indices: 14582233--14582285 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14582223 CCGGTCCAAT
* *
14582233 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14582259 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14582285 C
1 C
14582286 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14582999 original size:26 final size:26
Alignment explanation
Indices: 14582955--14583007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14582945 GGCTCAAACT
*
14582955 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATAAACTCCGTATG
14582981 CTTAGACATGG-AATAAACTCCGTATG
1 CTTAGAC-TGGCAATAAACTCCGTATG
14583007 C
1 C
14583008 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACTCCGTATG
Found at i:14583974 original size:158 final size:157
Alignment explanation
Indices: 14583463--14583995 Score: 502
Period size: 158 Copynumber: 3.4 Consensus size: 157
14583453 CTGCTGCTGG
* * * * *
14583463 TCCTACTGTCGTAACCCTCGGTCTGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTACTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
14583528 CAACCCATGAAACAAGCGTGCGGGCGCTCAGTC-AGCTGCAGAGGCAGAATGCGTAAGCCGAGGA
66 CAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGA-CCGGAGAGGCAGAATGCGCAAGCCGAGGA
* ** * * *
14583592 TAGGCTTGGTCCCCCCTCTGTACTGTCGA
130 TCGGCCCGAT-CCCCCTATGTGCTGTCGA
* * * * * *
14583621 TCCTACTGCCGCAACCCTC-ATTTCAGTTCGATCTTAGAATGGGACTAAACTCCGTATGCCTAAG
1 TCCTACTGCCGCAACCCTCGGTCT-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
14583685 TCAACCCATGAAACAAGCGTTCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGA
65 CCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGA
* *
14583750 TCGACCCGATCCCCCTTTGCATGCTGTC-A
130 TCGGCCCGATCCCCCTATG--TGCTGTCGA
*** * * * * * *** *
14583779 GTCCCGTTGCCACAACCCTCGGGC-CGGCTGGGGTTAGACAT-GGAATGAACTCCCTATGCCTAA
1 -TCCTACTGCCGCAACCCTCGGTCTAGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* ** * *
14583842 GCCAAACCATGAAACGGGCGTGCGGGTGCTCAGTCGACCGGAGAGGC-GAAATGCGCAAGCTGAG
64 GCCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAG-AATGCGCAAGCCGAG
*
14583906 GATCGGCCCGATCCCCACTATGTGTTGTCGA
128 GATCGGCCCGATCCCC-CTATGTGCTGTCGA
* *
14583937 TCCTACTGTCGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTACTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14583996 TTAGATTGGG
Statistics
Matches: 288, Mismatches: 75, Indels: 24
0.74 0.19 0.06
Matches are distributed among these distances:
157 34 0.12
158 227 0.79
159 27 0.09
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
TCCTACTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGAT
CGGCCCGATCCCCCTATGTGCTGTCGA
Found at i:14584005 original size:26 final size:26
Alignment explanation
Indices: 14583969--14584021 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14583959 CTAGTCCAAT
14583969 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14583995 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14584021 C
1 C
14584022 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14584687 original size:159 final size:157
Alignment explanation
Indices: 14584395--14584957 Score: 559
Period size: 159 Copynumber: 3.6 Consensus size: 157
14584385 GCTTCGACAT
** *
14584395 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGCCAGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * *
14584460 AGGCAGAATGCGCAAGCC-GAGGATCAGCCCGAT-CCCCCTATGCATGCTGTCGATCCTGCTGCT
66 AGGCAGAATGCGCAAGCCAG-GGATC-GGCCGATCCCCCCTATG--TGCTGCCGATCCTGCTGCC
*
14584523 GCAACCCTCGGTCTGATCTGATCTTAGGCTG
127 GCAACCCTCGGTCTGATCTGATCTTAGACTG
* * * *
14584554 GGAATGAACTCTGTATGCCTAAGCCGACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * *
14584619 AGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTATGTGCTACCGGTCCTACTGCCAC
66 AGGCAGAATGCGCAAGCCAGGGATCGGC-CGATCCCCC-CTATGTGCTGCCGATCCTGCTGCCGC
*
14584684 AACCCTCGGT-TCGA-CTGAGGCTTAGACAT-
129 AACCCTCGGTCT-GATCTGA-TCTTAGAC-TG
* * * * * * * *
14584713 GG-A--AACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGTGCTCAGTCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * * * *
14584775 AGGCAGAATACGCAAGCTAAGGATCGACCAGATCCCCCCTACGTGTTGCCAATCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCCAGGGATCGGCC-GATCCCCCCTATGTGCTGCCGATCCTGCTGCCGCA
* * * * *
14584840 ACCCTTGATCCGGTCTAATCTTAGACTG
130 ACCCTCGGTCTGATCTGATCTTAGACTG
* * * * *
14584868 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * *
14584933 A-GCAGGATGCGTAAGCCGGGGATCG
66 AGGCAGAATGCGCAAGCCAGGGATCG
14584958 AACGGATGGT
Statistics
Matches: 325, Mismatches: 65, Indels: 30
0.77 0.15 0.07
Matches are distributed among these distances:
154 1 0.00
155 37 0.11
156 82 0.25
157 18 0.06
158 57 0.18
159 119 0.37
160 6 0.02
161 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAGAATGCGCAAGCCAGGGATCGGCCGATCCCCCCTATGTGCTGCCGATCCTGCTGCCGCAA
CCCTCGGTCTGATCTGATCTTAGACTG
Found at i:14585592 original size:26 final size:26
Alignment explanation
Indices: 14585554--14585606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14585544 GGCTCAAAAT
14585554 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14585580 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14585606 C
1 C
14585607 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14585935 original size:159 final size:158
Alignment explanation
Indices: 14585579--14586073 Score: 408
Period size: 158 Copynumber: 3.1 Consensus size: 158
14585569 AACTCCATAT
* * *
14585579 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTCAA
* * * * *
14585644 CCAGTCGAAGAGGAAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
66 CCAGCCGAAGAGGAAGAATACGAAAGCTAGGGATCAACCCGATCCCCCCTGCATGCTGCCGATCC
* ** * *
14585709 TACTGCTGCAACCCTTGATCCGGTCTGA
131 CACTGCCACAACCCTCGATCCAGTCTGA
* * * *
14585737 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAG-TCAACCCATGAAACAAGCGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACAAGCGTGCGGGCGCTC
* * * * * *
14585800 AGCC-GACCGGAGAGGCATAATACGAAAG-TCGGGGATCAACCCGGTCCCCCTCTGCATGCTGCC
64 AACCAG-CCGAAGAGGAAGAATACGAAAGCT-AGGGATCAACCCGATCCCCC-CTGCATGCTGCC
* * * *
14585863 GGTCCCGCTGCCACAACCCTCGGTCCAGT-TGGG
126 GATCCCACTGCCACAACCCTCGATCCAGTCT-GA
* * ** * *
14585896 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCACAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTCAA
* * * * * * * ** * * *
14585961 CCGGCTGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCC
66 CCAGCCGAAGAGGAAGAATACGAAAGCTAGGGATCAACCCGATCCCCCCTGCATGCTGCCGATCC
** * * * * *
14586026 TGCTGTCGCAACCCTCGGTCCGGTCCGA
131 CACTGCCACAACCCTCGATCCAGTCTGA
*
14586054 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
14586074 TCATATGCTT
Statistics
Matches: 268, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 140 0.52
159 121 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTCAA
CCAGCCGAAGAGGAAGAATACGAAAGCTAGGGATCAACCCGATCCCCCCTGCATGCTGCCGATCC
CACTGCCACAACCCTCGATCCAGTCTGA
Found at i:14586106 original size:26 final size:26
Alignment explanation
Indices: 14586055--14586107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14586045 CCGGTCCGAT
*
14586055 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14586081 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14586107 C
1 C
14586108 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14586829 original size:26 final size:26
Alignment explanation
Indices: 14586778--14586830 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14586768 GGCTCAAAAT
*
14586778 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14586804 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14586830 C
1 C
14586831 CTATGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14587149 original size:159 final size:155
Alignment explanation
Indices: 14586803--14587239 Score: 459
Period size: 157 Copynumber: 2.8 Consensus size: 155
14586793 AACTCTATAT
* * *
14586803 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CAACCCACGAAACGAGCGTGC-GGCGCTCAG
* * * * ** *
14586868 CCGACCGGAGAGGCAGAATGTGTAAGTCAGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCCT
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTACCGATCCC
14586933 ACTGCCACAACCCTCAATCTGGTCTGA
129 ACTGCCACAACCCTCAATCTGGTCTGA
* * * *
14586960 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CAACCCACGAAACGAGCGTGCG-GCGCTCA
* * ** *
14587024 GCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCTGTTCTGCGTGCTACCGAT
63 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC--CCCTACGTGCTACCGAT
* *** *
14587089 CCCGCTGCCACAACCCTTGGT-TCGGT-TGGG
126 CCCACTGCCACAACCCTCAATCT-GGTCT-GA
* * *
14587119 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACAAAATCG-GCGTGCGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGC-AACCCACGAAA-CGAGCGTGCGGCGCTCAG
* * * *
14587183 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCT
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTACGTGCT
14587240 GTCGATCCTG
Statistics
Matches: 230, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 100 0.43
158 46 0.20
159 79 0.34
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAACCCACGAAACGAGCGTGCGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTACCGATCCCAC
TGCCACAACCCTCAATCTGGTCTGA
Found at i:14587680 original size:26 final size:26
Alignment explanation
Indices: 14587642--14587694 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14587632 TCGGTCTGAT
14587642 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14587668 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14587694 C
1 C
14587695 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14587774 original size:366 final size:354
Alignment explanation
Indices: 14587273--14587948 Score: 795
Period size: 366 Copynumber: 1.9 Consensus size: 354
14587263 CGTCCAATCC
* ** * * *
14587273 GATCTTAGATTGGGAATGAACTCTGTACGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14587338 CCCACAAAAGGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCATAATGCGCAAGTCGGGGACTAG
66 CCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCAGGGACTAG
* * *
14587403 CCCGATCCCCCTCTGGGGGCTGCCGATCCCGCTGCCGGTCCGGCTGCCACAACACTCAGTCCGG-
131 CCCGAT-CCCCTCTGCGCGCTGCCGAT----CT---GGT--GGCAG---CAACACTCAGTCCGGT
* * *
14587467 CTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGCG
183 CT-GAGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCC
*
14587532 CTCAG-CAGGTCAGAGAGGCAGAATGCGCAAGCCGGGG-TCAGCCCGGTCCCCCCTTGCGTGCTG
247 CTCAGTCA-GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTTGCGTGCTG
14587595 CGATCCTACTGCTGGTCCTACTACCGCAACCCTCGGTTCGGTCT
311 CGATCCTACTGCTGGTCCTACTACCGCAACCCTCGGTTCGGTCT
* *
14587639 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14587704 CCCATAAAACGAGTGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAG-CTAGGGA-TC
66 CCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGTC-AGGGACT-
* * * * * * *
14587767 GGCCCGATCGCCTCTGCGCGCTGTCGATCTTGTGGCAGCAACCCTCAGTTCGGTCTGATCTTAGA
129 AGCCCGATCCCCTCTGCGCGCTGCCGATCTGGTGGCAGCAACACTCAGTCCGGTCTGAGCTTAGA
* * * * *
14587832 CTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCTGAGTCAGCCG
194 CAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCCTCAGTCAGCCA
* * * *
14587897 GAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTG
259 GAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTTGCGTGCTG
14587949 TCGGTCCCGC
Statistics
Matches: 264, Mismatches: 41, Indels: 22
0.81 0.13 0.07
Matches are distributed among these distances:
353 97 0.37
354 28 0.11
356 4 0.02
358 2 0.01
361 2 0.01
365 18 0.07
366 113 0.43
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (354 bp):
GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCAGGGACTAG
CCCGATCCCCTCTGCGCGCTGCCGATCTGGTGGCAGCAACACTCAGTCCGGTCTGAGCTTAGACA
AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCCTCAGTCAGCCAGA
GAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTTGCGTGCTGCGATCCTACTGCTGG
TCCTACTACCGCAACCCTCGGTTCGGTCT
Found at i:14588148 original size:159 final size:157
Alignment explanation
Indices: 14587668--14588163 Score: 419
Period size: 159 Copynumber: 3.1 Consensus size: 157
14587658 ACTCCATATG
* * * * ** ** *
14587668 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATACCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* ** * * * * *
14587733 CGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGATCGCCTCTGCGCGCTGTCGATCTT
66 CGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCAG-TCCCCCCTTCGTGCTGTCGATCTT
* * *
14587798 G-TGGCAGCAACCCTCAGT-TCGGTCTGAT
130 GCTGCCA-CAACCCTCGGTCT-GGTCCGAT
* * * * *
14587826 CTTAGACTAT-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCTGAG
1 CTTAGAC-ATGGAATGAACTCCCTATACCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * *
14587890 TC-AGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGTCGGT
65 CCGA-CCGGAGAGGCAAAATGCGTAAGCCGGGGATCGG-CCAGTCCCCCCTT-CGTGCTGTCGAT
** * * * * **
14587954 CCCGCTGCCACAACCCTTGGTC-CGACTGGGG
127 CTTGCTGCCACAACCCTCGGTCTGGTC-CGAT
* * **
14587985 CTTAGACATGGAATGAACTCCCTATACCTAAGTCGACCCACGAAACGGGCATGCGGTTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATACCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* **
14588050 CGACCGGAGAGGTAAAATGCGTAAGCCGGGGATCGGCTCAGTCCCCCCCTTCGTGCTACCGATCT
66 CGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGC-CAGT-CCCCCCTTCGTGCTGTCGATCT
*
14588115 TGCTGCCACAAACCTCGGTCTGGTCCGAT
129 TGCTGCCACAACCCTCGGTCTGGTCCGAT
14588144 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
14588164 TGTAGGCTTA
Statistics
Matches: 266, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 94 0.35
159 157 0.59
160 14 0.05
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATACCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCCAGTCCCCCCTTCGTGCTGTCGATCTTG
CTGCCACAACCCTCGGTCTGGTCCGAT
Found at i:14589247 original size:159 final size:157
Alignment explanation
Indices: 14588879--14589378 Score: 438
Period size: 159 Copynumber: 3.2 Consensus size: 157
14588869 AACTCCATAT
* * * * **
14588879 GCTTAGACGTGGCATAAACTCCGTTTGCCTAAGCCAACCCACGAAACGAGCGTCTGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCTGAGCACTCAG
* * * * *
14588944 CCAGCTGGAGAGGTAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
65 CCAACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTATCGATCC
* * * *
14589009 TGCTGCCATAACCTTTAGTCCGGTCTGA
130 CGCTGCCACAACCCTCAGTCCGGTCTGA
* * * * *
14589037 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCGACCCACGAAACGAGCGTGC-GAGCACTGA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-CTGAGCACTCA
* * * * *
14589101 GCCAACCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCTCCTGCGTGCTGTCGGT
64 GCCAACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCC-CCTACGTGCTATCGAT
* * * *
14589166 CCCGTTGCCACAACCCTCGGTCTGG-CTGGG
128 CCCGCTGCCACAACCCTCAGTCCGGTCT-GA
* * * *
14589196 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTCCG-GGAGCTCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCTGAGCA-CTCA
* * * * ** * *
14589260 GCCGA-CTAGAGAGGCAGAATGCGCAAGCC-GGGGTC-GATCGAT-CCCCCTGCGTGCTGTCGAT
64 GCCAACCGA-AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTATCGAT
*** * * *
14589321 CTTACTGTCGCAACCCTCTGTCCGGTCTGA
128 CCCGCTGCCACAACCCTCAGTCCGGTCTGA
*
14589351 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
14589379 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 56, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
154 1 0.00
155 57 0.21
156 5 0.02
157 6 0.02
158 102 0.37
159 104 0.38
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCTGAGCACTCAGC
CAACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTATCGATCCC
GCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:14589381 original size:26 final size:26
Alignment explanation
Indices: 14589352--14589404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14589342 CCGGTCTGAT
14589352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14589378 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14589404 C
1 C
14589405 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14589875 original size:159 final size:157
Alignment explanation
Indices: 14589582--14590075 Score: 526
Period size: 159 Copynumber: 3.1 Consensus size: 157
14589572 GCATAGACAT
*
14589582 GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * * ** * ** * *
14589647 AGACAGAACGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTATGTGCTGTCTATCCTATTGTCGC
66 AGGCAGAATGCACAAGCCGGGGATCGGCC-GGT-CCCCCCTGCGTGCTGTCGATCCTGCTGACTC
*
14589712 AACCCTCAGTCCGGTTCGATCTTAGACTA
129 AACCCTCAGTCCGATTCGATCTTAGACTA
* * * *
14589741 GGAATGAACTCCGTATGCCTCAGTCAACCCATGAATTGAGCGTGCGGGCGCTGAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * *
14589806 AGGCATAATGCACAAGCCGGGGATCGGCTCGGTCCCTCACC-GCGTGCTGTCGGTCCCGCTGCCT
66 AGGCAGAATGCACAAGCCGGGGATCGGC-CGGTCCC-C-CCTGCGTGCTGTCGATCCTGCTGACT
* * * * **
14589870 TAACCCTCACTCCGACTGGGGCTTAGAC-A
128 CAACCCTCAGTCCGATTCGATCTTAGACTA
* * * * * *
14589899 TGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTTAGTCGGTCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGA
* * * *
14589964 GAGGTAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCGATCCTGCT-ACTG
65 GAGGCAGAATGCACAAGCCGGGGATCGG-CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGACT-
* * *
14590028 CAACCCCCAGTCCAATTCGATCTTAGACTG
128 CAACCCTCAGTCCGATTCGATCTTAGACTA
*
14590058 GGAATGAACCCCGTATGC
1 GGAATGAACTCCGTATGC
14590076 TTAGACGGGA
Statistics
Matches: 272, Mismatches: 55, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.01
158 55 0.20
159 209 0.77
160 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCACAAGCCGGGGATCGGCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGACTCAA
CCCTCAGTCCGATTCGATCTTAGACTA
Found at i:14590090 original size:26 final size:26
Alignment explanation
Indices: 14590049--14590101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14590039 CCAATTCGAT
14590049 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
14590075 CTTAGAC-GGGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACCCCGTATG
14590101 C
1 C
14590102 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:14590802 original size:26 final size:27
Alignment explanation
Indices: 14590764--14590817 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
14590754 GGCTTAAACT
*
14590764 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAAAGAACTTCCGTATG
14590790 CTTAGA-TGTGGAAAGAACTTCCGTATG
1 CTTAGACTG-GGAAAGAACTTCCGTATG
14590817 C
1 C
14590818 CTATGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 2 0.08
26 14 0.56
27 9 0.36
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAAAGAACTTCCGTATG
Found at i:14591219 original size:159 final size:157
Alignment explanation
Indices: 14590789--14591271 Score: 511
Period size: 158 Copynumber: 3.1 Consensus size: 157
14590779 AACTCCGTAT
* * * *
14590789 GCTTAGATGTGGAAAGAACTTCCGTATGCCTATGCTAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGA-CTGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
14590854 ACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATC
64 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
* * * *
14590919 CTGCTACCATAACCATCTGTCCGGTCTGA
129 CTGCTGCCACAACCCTCGGTCCGGTCTGA
* * * * * * * *
14590948 TCTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGCACTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * *
14591013 CCGGCCGAAGAGGCATAATGCGCAAACTGAGGATCAACCCGGTCCCCCTCTGCGTTCTGTCGGTC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGATC
* * *
14591078 CCGCTGCCACAACCCTCGGTCTGG-CTGGG
129 CTGCTGCCACAACCCTCGGTCCGGTCT-GA
* * * * *
14591107 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCATGAAACGGGCGTGTGGTCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14591171 TCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGCCAATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
*
14591236 TGCTGCCGCAACCCTCGGTCCGGTCTGA
130 TGCTGCCACAACCCTCGGTCCGGTCTGA
*
14591264 TCTTAGAC
1 GCTTAGAC
14591272 GACCCGTTTT
Statistics
Matches: 256, Mismatches: 63, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 41 0.16
158 139 0.54
159 75 0.29
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:14592511 original size:342 final size:342
Alignment explanation
Indices: 14591663--14592669 Score: 1369
Period size: 342 Copynumber: 2.9 Consensus size: 342
14591653 CTGGGAAACA
** * *
14591663 CCGATCTTAGACTGGAAATGAACTCCGTTTGCTTAGACTGAGGATGAACTCTGTATGTCTAAGTC
1 CCGATCTTAGACTGG-AATGAACTCCGCATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
* * * *
14591728 AACCCATGAAACGAGTGTGTGGGCGCTCAGTCGGTCGGAAAGGCATAATGCGCAAGCCGGGGATT
65 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTCGGAAAGGCATAATGCGCAAGCCGGGGATC
*
14591793 AGCTCGATCCCCCGCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAG
130 AGCTCGATCCCCCGCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
* * *
14591858 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGTCGGCC
195 ACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGTCGGCC
* * * * *
14591923 GGAGAGGCAGAATGCGCAGGCCGAGGATTGGCCCGATCCCCCCTGCGTGCTG-CCAGTCCTACTA
260 GGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGA-TCCTGCTA
*
14591987 CTGCAACCCTCGGTCCAGT
324 CTGCAACCCTCGATCCAGT
* * * *
14592006 TCGATCTTAGACTGGGAATGAACTCCGGATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTC
1 CCGATCTTAGACT-GGAATGAACTCCGCATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
* * * * *
14592071 AACCCACGAAATGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCATAATGCACAAGCCGAGGATC
65 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTCGGAAAGGCATAATGCGCAAGCCGGGGATC
* * * * * * * * * *
14592136 AACCCAATCCCCCGCTGCGTGCCGTCAGTCCCGCTGCCACGACCCTCAGTCTGGCTAGGGCTTAG
130 AGCTCGATCCCCCGCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
* * * *
14592201 ACATTGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGGCC
195 ACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGTCGGCC
*
14592266 GGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGAT-CCCCCTGTGTGCTGTCGATCCTGCTA-
260 GGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTAC
14592329 TCGCAACCCTCGATCC-GAT
325 T-GCAACCCTCGATCCAG-T
*
14592348 CCGATCTTAGACTAGGAATGAACTCCACATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
1 CCGATCTTAGACT-GGAATGAACTCCGCATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
* * * * * *
14592413 AACCCACAAAACAAGCGTGTGGGCACTCAACCGGTCGGAAAGGCATAATGCGTAAGTCGGGGATC
65 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTCGGAAAGGCATAATGCGCAAGCCGGGGATC
* * * *
14592478 AGCTCGGTCCCCCACTGTGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
130 AGCTCGATCCCCCGCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
* * *
14592543 AC-TTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTCAGTCGGC
195 ACATT-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGTCGGC
* *
14592607 CGAAGAGGAAGAATGCGCAAGTCG-GTGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTG
259 CGGAGAGGCAGAATGCGCAAGTCGAG-GATCGGCCCGAT-CCCCCCTGCGTGCTGTCGATCCTG
14592670 TTGCCTGTCC
Statistics
Matches: 575, Mismatches: 81, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
341 5 0.01
342 286 0.50
343 260 0.45
344 24 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (342 bp):
CCGATCTTAGACTGGAATGAACTCCGCATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTCGGAAAGGCATAATGCGCAAGCCGGGGATCA
GCTCGATCCCCCGCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA
CATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAGTCGGCCG
GAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACT
GCAACCCTCGATCCAGT
Found at i:14593071 original size:160 final size:158
Alignment explanation
Indices: 14592711--14593071 Score: 377
Period size: 160 Copynumber: 2.3 Consensus size: 158
14592701 GGACCGATCA
*
14592711 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAGCCG
1 TAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAGCCG
* * * * * * * * * * *
14592776 GTCGGAGAGGCAGAATGCGCAAGCTAGGGATCAGCCCGGTCCTTCCTATGTGCTATTGATCCTGT
66 GTCGAAAAGGCAGAATGCACAAGCCAAGAATCAACCCGGTCCTCCCTATGTGCTATAGATCCCGC
** * * *
14592841 TGCTGCAACCCTCGGTCTGATCCGATCT
131 TGCCACAACCCTCGATCTGATCAGAGCT
* * ** * * * *
14592869 TAGATTGGGAATGAACTCCGTATGCGTAAGTAAACACACGAAATGAGCGTGCGGGCGCTGAGCCG
1 TAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAGCCG
* *
14592934 GTCCGAAAAGGCATAATGCACAAGCCAAGAATCAACCCGGTCCTCCTCTGTGTGCTATCAG-TCC
66 GT-CGAAAAGGCAGAATGCACAAGCCAAGAATCAACCCGGTCCTCC-CTATGTGCTAT-AGATCC
* *
14592998 CGCTGCCACAACCCTCGATCTG-GCTAGGGCT
128 CGCTGCCACAACCCTCGATCTGATC-AGAGCT
* *
14593029 TAGAGAT-GGAATGAACTCCCTACGCCTAAGCCAACCCACGAAA
1 TAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
14593072 CGGGGCGTCC
Statistics
Matches: 163, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 59 0.36
159 35 0.21
160 67 0.41
161 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
TAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAGCCG
GTCGAAAAGGCAGAATGCACAAGCCAAGAATCAACCCGGTCCTCCCTATGTGCTATAGATCCCGC
TGCCACAACCCTCGATCTGATCAGAGCT
Found at i:14593222 original size:26 final size:26
Alignment explanation
Indices: 14593186--14593238 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14593176 CTGGTTCGAT
14593186 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14593212 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14593238 C
1 C
14593239 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14593947 original size:26 final size:26
Alignment explanation
Indices: 14593899--14593951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14593889 CCGGTCCGAT
*
14593899 CTTAGACTGGCAATGAACCCCGTATG
1 CTTAGACTGGCAATAAACCCCGTATG
*
14593925 CTTAGACATGG-AATAAACTCCGTATG
1 CTTAGAC-TGGCAATAAACCCCGTATG
14593951 C
1 C
14593952 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACCCCGTATG
Found at i:14593978 original size:185 final size:184
Alignment explanation
Indices: 14593739--14594109 Score: 456
Period size: 185 Copynumber: 2.0 Consensus size: 184
14593729 TCCGGCTGGG
* * * * *
14593739 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCTACCCACGAAACAAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACAAGCGTGCAGGCGCTCAG
* * * * *
14593804 CCGACCGAAGAGGTAGAATGCGCAAGTCAGGGAAT-GGCCCGATCTGCCCCTGTGTGCTGTCGAT
66 CCAACCGAAGAGGCAGAATGCGCAAGT-AGGGAATCGACCCGATC-CCCCCTGCGTGCTGTCGAT
* * * * *
14593868 CTTGCTGCCGCGACCCTCGGTCCGGTCCGATCTTAGACTGGCAATGAACCCCGTAT
129 CCTGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGCAATGAACCCCGTAT
* ** *
14593924 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCTCAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACAAGCGTGCAGGCGCTCAG
* * * * * *
14593989 CCAATCGGAGAGGCAGAATGCGTAAGTTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAACCGAAGAGGCAGAATGCGCAAGTAGGGAATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * *
14594054 TGCTATCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGCAATGAACCCCGTAT
14594108 GC
1 GC
14594110 CTAAGTCAAC
Statistics
Matches: 156, Mismatches: 29, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
184 71 0.46
185 85 0.54
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACAAGCGTGCAGGCGCTCAG
CCAACCGAAGAGGCAGAATGCGCAAGTAGGGAATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCAGTCCGATCCGATCTTAGACTGGCAATGAACCCCGTAT
Found at i:14594296 original size:159 final size:157
Alignment explanation
Indices: 14593924--14594370 Score: 497
Period size: 159 Copynumber: 2.8 Consensus size: 157
14593914 AACCCCGTAT
*
14593924 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCC-TCAAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCAT-AAAATGAGCGTGCGGGCGCTCA
*** * *
14593988 GCCAATCGGAGAGGCAGAATGCGTAAGTTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
65 GCCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCG-CCCGGTCCCCCCTGCGTGCTGTCGATC
** * *
14594053 CTGCTATCGCAACCCTCAGTCCGATCTGA
129 CCACTACCACAACCCTCAGTCCGATCTGA
* * * * *
14594082 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGTGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCATAAAATGAGCGTGCGGGCGCTCA
* * * * * * *
14594146 GTCGGCCGAAGAGGCATAATGCATAAGCCGGGGATCAGCCTGGTCCCCCTCTGCATGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATC-GCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * ** *
14594211 CCCACTGCCACAATCCTTGGTCCGA-CTGGG
128 CCCACTACCACAACCCTCAGTCCGATCT-GA
* * * * *
14594241 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATAAAATGAGCGTGCGGGCGCTCAG
*
14594306 CCGGCCGGAGAGGTAGAATGCGA-AAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGC-ATAAGTCGGGGATC-GCCCGGTCCCCCCTGCGTGCTGTCGATC
14594370 C
129 C
14594371 TGCTGCCGCA
Statistics
Matches: 237, Mismatches: 45, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 109 0.46
159 125 0.53
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATAAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCCC
ACTACCACAACCCTCAGTCCGATCTGA
Found at i:14594438 original size:26 final size:26
Alignment explanation
Indices: 14594400--14594452 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14594390 CCAGTTCGAT
* *
14594400 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14594426 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14594452 C
1 C
14594453 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14594550 original size:184 final size:184
Alignment explanation
Indices: 14594241--14594600 Score: 531
Period size: 184 Copynumber: 2.0 Consensus size: 184
14594231 TCCGACTGGG
* * *
14594241 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * *
14594306 CCGGCCGGAGAGGTAGAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
* * * * *
14594371 TGCTGCCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAATTCTGTAT
131 TACCGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAATTCTGTAT
* *
14594425 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * *
14594490 CCGACTGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCT
66 CCGACCGAAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
* **
14594555 TACCGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAA
131 TACCGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAA
14594601 CTCCGCAAGC
Statistics
Matches: 155, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
184 155 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
TACCGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAATTCTGTAT
Found at i:14594725 original size:158 final size:157
Alignment explanation
Indices: 14594426--14594926 Score: 509
Period size: 158 Copynumber: 3.2 Consensus size: 157
14594416 ATTCTGTATG
** *
14594426 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
14594491 CGACTGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCT
66 CGGCTGGAGAGGCAGAATGAGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGATC-
*
14594555 TACCGCT--GCAACCCTCGGTCTGGTCCAAT
130 --CCGCTCCGCAACCCTCGGTC-GGTCCGAT
* * * *
14594584 CTTAGAC-TAGGAATGAACTCCGCAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14594648 CTGGC-GGAGTGGCATAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGTGCTG-CCAGT
65 CCGGCTGGAGAGGCAGAATGAGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGA-T
* *** * *
14594711 CCCGCTACCACAACCCTCGGTCCAACGGGAG
129 CCCGCT-CCGCAACCCTCGGTCGGTC-CGAT
* *
14594742 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
14594807 CGGCTGGAGAGGCAGAATGAGAAAG-CTGCGGATCAGCCC-AGT-CCCCTCTGTGTGCTGTCGAT
66 CGGCTGGAGAGGCAGAATGAGCAAGTC-GAGGATCGGCCCGA-TCCCCCTCTGTGTGCTGTCGAT
* *
14594869 CCTGTTGCCGCAACCCTCGGTCCGGTCCGAT
129 CCCGCT-CCGCAACCCTCGGT-CGGTCCGAT
*
14594900 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14594927 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 49, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
155 5 0.02
157 41 0.15
158 202 0.72
159 32 0.11
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCTGGAGAGGCAGAATGAGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGATCC
CGCTCCGCAACCCTCGGTCGGTCCGAT
Found at i:14594910 original size:500 final size:498
Alignment explanation
Indices: 14593700--14595015 Score: 1651
Period size: 500 Copynumber: 2.6 Consensus size: 498
14593690 TGCCAATCTC
* * *
14593700 GCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTAT
1 GCTGTCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
* * ** * * * *
14593765 GCCTAAGCCTACCCACGAAACAAGCGTGCAGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGAAAG
* * *
14593830 TCAGGGAAT-GGCCCGATCTGCCCCTGTGTGCTGTCGATCTTGCTGCCGCGACCCTCGGTCCGGT
131 -CTGGG-ATCGGCCCG-TC--CCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGT
* * * *
14593894 CCGATCTTAGACTGGCAATGAACCCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGAC
191 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGAC
* * * * * * *
14593959 AACCC-TCAAAATGAGCGTGCGGGCGCTCAGCC-AATCGGAGAGGCAGAATGCGTAAGTTGGGGA
256 AACCCAT-GAAATGAGCGTACGGGCGCTCAGCCGACT-GAAGAGGCAGAATGCGCAAGTCGAGGA
* * * **
14594022 TCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCAGTCCGATCTGATCTTA
319 TCGACCCGGTCCCCCCTACGTGCTGTCGATCCTCCGATCGCAACCCTCAGTCCGATCCAATCTTA
* * * * * *
14594087 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGTGTGCGGGCGCTCAGTCGGC
384 GACTAGGAATGAACTCCGCAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGC
* * *
14594152 CGAAGAGGCATAATGCATAAGCCGGGGATCAGCCTGGTCCCCCTCTGCAT
449 CGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCAT
* * * * *
14594202 GCTGTCGGTCCCACTGCCACAATCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
14594267 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGAAAG
66 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGAAAG
* * * *
14594332 TCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTTC
131 -CTGGGATCGGCCC-GT-CCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCC
* *
14594397 GATCTTAGACTGGGAATGAATTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
193 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAA
* * * *
14594462 CCCATGAAACGAGCGTATGGGCACTCAGCCGACTGAAGAGGCAGAATGCGCAAGTCGAGGATCGG
258 CCCATGAAATGAGCGTACGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGCAAGTCGAGGATCGA
* * * * *
14594527 CCCGGTCCCCCCTACGTGCTGTCGATCTTACCGCT-GCAACCCTCGGTCTGGTCCAATCTTAGAC
323 CCCGGTCCCCCCTACGTGCTGTCGATCCT-CCGATCGCAACCCTCAGTCCGATCCAATCTTAGAC
** *
14594591 TAGGAATGAACTCCGCAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG-CTGG-CG
387 TAGGAATGAACTCCGCAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTC-GGCCG
* * ** * * **
14594654 GAGTGGCATAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTCTGTGT
451 AAGAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCAT
* * *
14594702 GCTGCCAGTCCCGCTACCACAACCCTCGGTCCAAC-GGGAGCTTAGACATGGAATGAACTCCGTA
1 GCTGTCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGG-GCTTAGACATGGAATGAACTCCGTA
* * * *
14594766 TGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGAGAAA
65 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGAAA
* *
14594831 GCTGCGGATCAGCCCAGTCCCCTCTGTGTGCTGTCGATCCTGTTGCCGCAACCCTCGGTCCGGTC
130 GCTG-GGATCGGCCC-GTCCCC-CTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTC
* *
14594896 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTC
192 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGAC
* * *
14594960 AACCCACGAAATGAGCGTACGGGCGCTCAGCCGAC-CAGAGAGGCAGGATGCGCAAG
256 AACCCATGAAATGAGCGTACGGGCGCTCAGCCGACTGA-AGAGGCAGAATGCGCAAG
14595016 CTAGGGATCG
Statistics
Matches: 705, Mismatches: 97, Indels: 26
0.85 0.12 0.03
Matches are distributed among these distances:
499 11 0.02
500 310 0.44
501 252 0.36
502 130 0.18
503 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (498 bp):
GCTGTCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGAAAG
CTGGGATCGGCCCGTCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCC
ATGAAATGAGCGTACGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCC
GGTCCCCCCTACGTGCTGTCGATCCTCCGATCGCAACCCTCAGTCCGATCCAATCTTAGACTAGG
AATGAACTCCGCAAGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCCGAAGAG
GCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTGCAT
Found at i:14594936 original size:26 final size:26
Alignment explanation
Indices: 14594900--14594952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14594890 CCGGTCCGAT
*
14594900 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14594926 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14594952 C
1 C
14594953 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14596060 original size:157 final size:159
Alignment explanation
Indices: 14595658--14596274 Score: 608
Period size: 157 Copynumber: 3.9 Consensus size: 159
14595648 AACTCCATAT
* * *
14595658 GCTTAGACATTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCGGGCGCTC-
1 GCTTAGACA-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
14595722 AGCTG-CCGGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGAT
65 ATCAGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
* ** *
14595786 CCTGCTGCCACAACCCTCAGTCCGGTCT-GA
130 CCCGCTGCCACAACCCTTGGTCCGG-CTGGG
* * * * * * * * * *
14595816 TCTTAGAC-TCGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATACAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
14595880 GTCAGTCGA-AGAGGCATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCTCTGCGTGCTG-CCAG
65 ATCAGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGA-
14595943 TCCCGCTGCCACAACCCTTGGT-CGGCTGGG
129 TCCCGCTGCCACAACCCTTGGTCCGGCTGGG
* * * *
14595973 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * ** *
14596038 TC-GACCAGAGAGGCATAATGCGCAAGCTGGGGATCCGCTCGGTCCCCCCTGTGTGCTGTCGATA
66 TCAGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
14596102 CCGCTGCCACAA-CCTTCGGTCCGGCTGGG
131 CCGCTGCCACAACCCTT-GGTCCGGCTGGG
* * * *
14596131 GCTTAGACATGGAATGAGCTCCCTATGCTTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTC-A
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * ** *
14596195 GCCGACCGGAGAGGTAGAATGTGCAAGCTGGGGATCGGCCCGGT-CCCCCTACGTGCTATCGATC
66 TCAGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
* *
14596259 CTGCTGCCGCAACCCT
131 CCGCTGCCACAACCCT
14596275 CGTTCCGATC
Statistics
Matches: 375, Mismatches: 72, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
156 10 0.03
157 186 0.50
158 178 0.47
159 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCAGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
CCGCTGCCACAACCCTTGGTCCGGCTGGG
Found at i:14596231 original size:315 final size:314
Alignment explanation
Indices: 14595658--14596251 Score: 696
Period size: 315 Copynumber: 1.9 Consensus size: 314
14595648 AACTCCATAT
* * *
14595658 GCTTAGACATTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
*
14595723 GCTGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 GCTGCCAGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
* * *
14595788 TGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTCGGAATGAACTCCGTATGCATAAGTCAA
131 TGCTGCCACAACCCTCAGTCCGGTCTGAGCTTAGACTCGGAATGAACTCCCTATGCATAAGCCAA
* * * * * *
14595853 CCCACGAAATGAGCATACAGGCGTTGAGTCAGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
196 CCCACGAAACGAGCATACAGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGG
* *
14595918 CCTGGTCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTTGGTCGGCTGGG
261 CCCGGTCCCC-CTACGTGCTGCCAGTCCCGCTGCCACAACCCTTGGTCGGCTGGG
* * * *
14595973 GCTTAGACA-TGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCA
1 GCTTAGACATTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * **
14596037 -ATCGACCAGAGAGGCATAATGCGCAAGCTGGGGATCCGCTCGGTCCCCCCTGTGTGCTGTCGAT
66 GCT-G-CCAGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGAT
* * * * *
14596101 ACC-GCTGCCACAACCTTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAGCTCCCTATGCTTAA
129 -CCTGCTGCCACAACCCTCAGTCCGGTCT-GAGCTTAGAC-TCGGAATGAACTCCCTATGCATAA
* * * * * * * * **
14596163 GCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCC-GACCGGAGAGGTAGAATGTGCAAGCTGGG
191 GCCAACCCACGAAACGAGCATACAGGCGCTCAGCCAG-CCGAAGAGGCAGAATGCGCAAGCCAGG
14596227 GATCGGCCCGGTCCCCCTACGTGCT
255 GATCGGCCCGGTCCCCCTACGTGCT
14596252 ATCGATCCTG
Statistics
Matches: 230, Mismatches: 43, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
313 1 0.00
314 60 0.26
315 166 0.72
316 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (314 bp):
GCTTAGACATTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCTGCCAGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCGGTCTGAGCTTAGACTCGGAATGAACTCCCTATGCATAAGCCAA
CCCACGAAACGAGCATACAGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGG
CCCGGTCCCCCTACGTGCTGCCAGTCCCGCTGCCACAACCCTTGGTCGGCTGGG
Found at i:14596318 original size:26 final size:26
Alignment explanation
Indices: 14596289--14596341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14596279 CCGATCCAAT
14596289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14596315 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14596341 C
1 C
14596342 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14596672 original size:26 final size:26
Alignment explanation
Indices: 14596643--14596695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14596633 CTGGTCCGAT
*
14596643 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14596669 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14596695 C
1 C
14596696 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14596709 original size:354 final size:354
Alignment explanation
Indices: 14595973--14596766 Score: 1000
Period size: 354 Copynumber: 2.3 Consensus size: 354
14595963 GTCGGCTGGG
* * * * * *
14595973 GCTTAGACATGGAG-TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCA
* * ** * *
14596037 ATCGACCAGAGAGGCATA-ATGCGCAAGCTGGGGATCCGCTC-GGTCC-CCCCTGTGTGCTGTCG
65 ACCGACCAGAGAGGCA-AGACGCGCAAGCTGGGGATTAGC-CAGGTCCACCTCTGCGTGCTGTCG
* * *
14596099 ATACCGCT----G--C--C-A-C--AACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTC
128 ATCCCGCTGCCGGTCCTACTACCAAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC
* * * *
14596152 CCTATGCTTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGT
193 CCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGT
* *
14596217 GCAAGCTGGGGATCGGCCCGGTCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGTTCCG
258 GCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGTTCCG
14596282 ATCCAATCTTAGACTGGGAATGAACTCCGTAT
323 ATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
14596314 GCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGTGCTCAA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAA
*
14596379 CCG-GCAGGAGAGGCATA-ACGCGCAAGC-GGGGATTAGCCAGGTCCACCTCTGCGTGCTGTCGA
66 CCGACCA-GAGAGGCA-AGACGCGCAAGCTGGGGATTAGCCAGGTCCACCTCTGCGTGCTGTCGA
*
14596441 TCCCGCTGCCGGTCCTACTACCAAAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCC
129 TCCCGCTGCCGGTCCTACTACCAAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCC
*
14596506 CTATGCCTAAGCCAACCCACGAAGCGGGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGTG
194 CTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGTG
* * * * * *
14596571 TAAGCCGGGGATTGGCCCGATCCCTTCC-GCGTGCTGTCGATCCTGTTGTCGCAACCCTCAG-TC
259 CAAGCCGGGGATCGGCCCGATCCC--CCTACGTGCTATCGATCCTGCTGCCGCAACCCTC-GTTC
* * * *
14596634 TGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
321 CGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* *
14596668 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAA
*
14596733 CCGACCAGAGAGGCAAGATGCGCAAGCTGGGGAT
66 CCGACCAGAGAGGCAAGACGCGCAAGCTGGGGAT
14596767 CGAACGGGTG
Statistics
Matches: 385, Mismatches: 46, Indels: 30
0.84 0.10 0.07
Matches are distributed among these distances:
339 1 0.00
340 19 0.05
341 92 0.24
345 1 0.00
347 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
353 119 0.31
354 138 0.36
355 11 0.03
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (354 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAA
CCGACCAGAGAGGCAAGACGCGCAAGCTGGGGATTAGCCAGGTCCACCTCTGCGTGCTGTCGATC
CCGCTGCCGGTCCTACTACCAAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGCA
AGCCGGGGATCGGCCCGATCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGTTCCGATC
CAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14597893 original size:158 final size:158
Alignment explanation
Indices: 14597390--14598009 Score: 719
Period size: 158 Copynumber: 3.9 Consensus size: 158
14597380 AACTCCGTAT
* * * *
14597390 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCTACGAAACGAGCGTGCGGTCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
14597455 TCGGTCGGAGAGGCAGATTGCGCAAGCTGGGGATAGGCTCAGCCCCCCCTACGTGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
* * ** * * * *
14597520 TGTTGTCGTAACCCTCGATCTGA-TCCGA
131 TGCTGCCACAACCCTCGGTCCGACT-GGG
* * * * * * * *
14597548 TCTTAGACTTGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14597613 CCGACC-GATGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGT
66 CCGGCCGGA-GAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGAT
14597677 CCTGCTGCCACAACCCTCGGTCC-AGCTGGG
129 CCTGCTGCCACAACCCTCGGTCCGA-CTGGG
*
14597707 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * *
14597771 GCTGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCCGCTCGGTCCCCCCTGTGTGCTGCCGATC
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
*
14597836 CCGCTGCCACAACCCTCGGTCCGACTGGG
130 CTGCTGCCACAACCCTCGGTCCGACTGGG
* * *
14597865 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
* * *
14597929 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATC
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
* *
14597994 CTACTGCCGCAACCCT
130 CTGCTGCCACAACCCT
14598010 TGGTTCGGTC
Statistics
Matches: 393, Mismatches: 61, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
157 2 0.01
158 261 0.66
159 127 0.32
160 3 0.01
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:14597965 original size:317 final size:316
Alignment explanation
Indices: 14597390--14598009 Score: 755
Period size: 317 Copynumber: 2.0 Consensus size: 316
14597380 AACTCCGTAT
* * * * *
14597390 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCTACGAAACGAGCGTGCGGTCGCTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14597455 TCGGTCGGAGAGGCAGATTGCGCAAGCTGGGGATAGGCTCAGCCCCCCCTACGTGCTATCGATCC
66 TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATACGCTCAGCCCCCCCTACGTGCTACCGATCC
* * * ** * * * *
14597520 TGTTGTCGTAACCCTCGATCTGATCCGATCTTAGACTTGGAATGAACTCCGTATGCATAAGTCAA
131 CGCTGCCACAACCCTCGATCCGATCCGAGCTTAGACTTGGAATGAACTCCCTATGCATAAGCCAA
* * * * *
14597585 CCCACGAAACGAGCGTACGGGCGTTGAGCCGACCGATGAGGCATAATGCGCAAGCCGGGGATCGG
196 CCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGATGAGGCAGAATGCACAAGCCGGGGATCGG
* * *
14597650 CTCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGG
261 CCCGGTCCCCC-CTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCAGCTGGG
14597707 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * ** *
14597771 G-CTGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCCGCTCGGTCCCCCCTGTGTGCTGCCGAT
65 GTC-GGCCGGAGAGGCAGAATGCACAAGCCGGGGATACGCTCAGCCCCCCCTACGTGCTACCGAT
* * * *
14597835 CCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGC
129 CCCGCTGCCACAACCCTCGATCCGATC-CGAGCTTAGACTTGGAATGAACTCCCTATGCATAAGC
* * * *
14597899 CAACCCATGAAACTG-GCGTGCAGGCGCTCAGCCGGTCGGA-GAGGCAGAATGCACAAGCCGGGG
193 CAACCCACGAAAC-GAGCGTACAGGCGCTCAGCC-GACCGATGAGGCAGAATGCACAAGCCGGGG
* *
14597962 ATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTGCCGCAACCCT
256 ATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCT
14598010 TGGTTCGGTC
Statistics
Matches: 254, Mismatches: 44, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
316 32 0.13
317 217 0.85
318 5 0.02
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (316 bp):
GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATACGCTCAGCCCCCCCTACGTGCTACCGATCC
CGCTGCCACAACCCTCGATCCGATCCGAGCTTAGACTTGGAATGAACTCCCTATGCATAAGCCAA
CCCACGAAACGAGCGTACAGGCGCTCAGCCGACCGATGAGGCAGAATGCACAAGCCGGGGATCGG
CCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCAGCTGGG
Found at i:14598053 original size:26 final size:26
Alignment explanation
Indices: 14598024--14598076 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14598014 TCGGTCTGAT
14598024 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
14598050 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14598076 C
1 C
14598077 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14598497 original size:356 final size:341
Alignment explanation
Indices: 14597707--14598669 Score: 1072
Period size: 356 Copynumber: 2.7 Consensus size: 341
14597697 TCCAGCTGGG
* *
14597707 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * * * * *
14597771 GCTGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCCGCTCGGTCCCCCCTGTGTGCTGCCGATC
65 GCTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
14597836 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCA
130 CTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCA
*
14597901 ACCCATGAAACTG-GCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATC
194 ACCCATGAAA-TGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATC
* ** * ** *
14597965 GGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTTGGTTCGGTCTGATCTTAGA
258 AGCCCAATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCGCGGTTCGGTCCGATCTTAGA
*
14598030 CTGGGAATGAACTCTGTAT
323 CTGGGAATGAACTCCGTAT
* * * * *
14598049 GCTTAGA-TTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
14598113 GCCGGCCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCT
65 ----G-C----TGGCC-A--G-AGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC-CT
* * *
14598178 GGGTGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCC
116 GCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC-TGGAATGAACTCC
* * *
14598243 GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCG
180 GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCA
* * *
14598308 CAAGCCGGGGATCAGCTCAATCCCCCCCTGCGTGTTGTCGATCCTGCTGCTAGTCCTAGTGCGGT
245 CAAGCCGGGGATCAGCCCAAT-CCCCCCTGCGTGCTGTCGAT-C--CTACT-G-CC----GC---
14598373 AACCCGCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
297 AACCCGCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
14598418 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
14598483 CTGGCCAGAGAGGCAGAATGTGTAAGCCAGGGATCGGCCCGGTCCCCCCTTGCGTGCTGTC-AGT
66 CTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCC-TGCGTGCTGTCGA-T
* ** *
14598547 CCTGCTGCTACAACCCTCGGTCCGGTCT-GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGT
129 CCTGCTGCCACAACCCTCGGTCCGG-CTGGGGCTTAGACTG-GAATGAACTCCGTATGCCTAAGC
* * ** * * *
14598611 CAACCCATGAAACGAGCGTGCGAGCATTGAGCCAGTCGGAGAGGCATAATGCACAAGCC
192 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCC
14598670 AAGGATCGGC
Statistics
Matches: 516, Mismatches: 70, Indels: 56
0.80 0.11 0.09
Matches are distributed among these distances:
342 54 0.10
343 1 0.00
346 1 0.00
347 1 0.00
351 4 0.01
354 1 0.00
355 39 0.08
356 280 0.54
357 21 0.04
358 1 0.00
359 1 0.00
360 8 0.02
361 1 0.00
362 2 0.00
364 1 0.00
365 1 0.00
366 2 0.00
369 96 0.19
370 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (341 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGC
CCAATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCGCGGTTCGGTCCGATCTTAGACTG
GGAATGAACTCCGTAT
Found at i:14598815 original size:159 final size:158
Alignment explanation
Indices: 14598418--14598858 Score: 483
Period size: 159 Copynumber: 2.8 Consensus size: 158
14598408 AACTCCGTAT
*
14598418 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * **
14598483 CTGGCCAGAGAGGCAGAATGTGTAAGCCAGGGATCGGCCCGGTCCCCCCTTGCGTGCTGTCAGTC
66 CCGGCTGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGGTCCCCCC-TGCGTGCTACCAGTC
** * * *
14598548 CTGCTGCTACAACCCTCGGTCCGGTCTGA
130 CCACTGCCACAACCCTCCGTCCGGACTGA
* * * ** *
14598577 TCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCATTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * ** * *
14598641 GCCAG-TCGGAGAGGCATAATGCACAAGCCAAGGATCGGCCCGGTCCCCCTCTGCATGCTACCGG
65 GCCGGCT-GGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGGTCCCCC-CTGCGTGCTACCAG
*
14598705 TCCCACTGCCACAACCCTCCGTCC-GACTGGG
128 TCCCACTGCCACAACCCTCCGTCCGGACT-GA
* ** * * * *
14598736 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
14598801 CCGGCTGGAAAGGCAGAATGTGCATGCCGAGGATTGGCCCGGTCCCCCCTGCGTGCTA
66 CCGGCTGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTA
14598859 TCGATCCTGT
Statistics
Matches: 228, Mismatches: 48, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
158 14 0.06
159 210 0.92
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTACCAGTCC
CACTGCCACAACCCTCCGTCCGGACTGA
Found at i:14603077 original size:26 final size:26
Alignment explanation
Indices: 14603048--14603100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14603038 CCGGTCTGAT
14603048 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
14603074 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14603100 C
1 C
14603101 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14603523 original size:157 final size:156
Alignment explanation
Indices: 14603258--14603757 Score: 470
Period size: 157 Copynumber: 3.2 Consensus size: 156
14603248 CCGGCTGGGG
* *
14603258 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * * * * * *
14603323 CGGCCGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCTGATCCCCCTACGTACTATCGATCCTA
66 C-GACAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTATCGATCCTA
14603388 CTACTGCAACCCTCGGTCTGGTCTGAT
130 CTACTGCAACCCTCGGTCTGGTCTGAT
* * * * * *
14603415 CTTAGAC-TGGGAAGGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGGGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
14603479 CCAGTCAGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTTGCATGCTACCGGTC
65 TC-GACAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC--TACGTGCTATCGATC
** ** * * **
14603544 CCGCTACCACAACCCTCAGTCCGG-CTGGGG
127 CTACTACTGCAACCCTCGGTCTGGTCT-GAT
* * * * * * * *
14603574 CTTAGACATGGAATGACCTCCCTAGGCCTAAGCCAACCTAGGAAACGGGGGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * *
14603639 CGACTAGAGAGACAAAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTACGTGCTATCGATCCTA
66 CGAC-AGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTATCGATCCTA
* *
14603704 CT-GTCGCAACCCTCGGT-TCGATCTGAT
130 CTACT-GCAACCCTCGGTCT-GGTCTGAT
*
14603731 CTTAGAC-TAGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14603758 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 68, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
156 2 0.01
157 140 0.53
158 6 0.02
159 116 0.44
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGACAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTATCGATCCTAC
TACTGCAACCCTCGGTCTGGTCTGAT
Found at i:14603648 original size:159 final size:158
Alignment explanation
Indices: 14603218--14603686 Score: 478
Period size: 157 Copynumber: 3.0 Consensus size: 158
14603208 TGTCGATCCC
*
14603218 ACTACCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 ACTACCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * ** * * *
14603283 GCCTAAACCAACCCACGAAACGAGCGTACGGGCACTCAGTCGGCCGGAGAGGTAGAATGTGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACTAGAGAGGCAAAATGCGCAAG
* *
14603348 CCGGGGATCGGCCTGATCCCCC-TACGT
131 CCGGGGATCGGCCCGATCCCCCTTACAT
* * * ** * * ** *
14603375 ACTATCGATCCTACTACTGCAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAAGGAACTCCGT
1 ACTACCGGTCCTGCTACCACAACCCTCAGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGT
* * * * * * * * *
14603438 ATGCCTAAGCCAACCCATGAAACAAGCATGGGGGCACTGAG-CCAGTCAGAGAGGCATAATGCAC
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACT-AGAGAGGCAAAATGCGC
*
14603502 AAGCCGGGGATCGGCCCGATCCCCCTTTGCAT
128 AAGCCGGGGATCGGCCCGATCCCCC-TTACAT
* * * * *
14603534 GCTACCGGTCCCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGACCTCCCTAG
1 ACTACCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * * *
14603599 GCCTAAGCCAACCTAGGAAACGGGGGTGCGGGCGCTCAGTCGACTAGAGAGACAAAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACTAGAGAGGCAAAATGCGCAAG
* *
14603664 CCAGGGATCGGTCCGATCCCCCT
131 CCGGGGATCGGCCCGATCCCCCT
14603687 ACGTGCTATC
Statistics
Matches: 243, Mismatches: 61, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
156 2 0.01
157 117 0.48
158 5 0.02
159 115 0.47
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
ACTACCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACTAGAGAGGCAAAATGCGCAAG
CCGGGGATCGGCCCGATCCCCCTTACAT
Found at i:14603760 original size:26 final size:26
Alignment explanation
Indices: 14603731--14603783 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14603721 TCGATCTGAT
*
14603731 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
* * *
14603757 CTTAGACTGGGGATAAACTTTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
14603783 C
1 C
14603784 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:14607710 original size:159 final size:158
Alignment explanation
Indices: 14607407--14607910 Score: 396
Period size: 159 Copynumber: 3.2 Consensus size: 158
14607397 AACTCCGTAT
*
14607407 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACAAGCGTACGGGCGCTCAG
* * * *
14607472 CCAATCGAAGAGGCAGAATGTGCAAGCCAGGGATCGGCTCGGTTCCCCCCTGTCTGCCATCAATC
65 CCAATCGAAGAGGCAGAATGCGCAAACCAGGGATCGGCCCGGTTCCCCCCTGTCTGCCACCAATC
* ***
14607537 CTGCTGCTGTAACCCTCAGTCCAGTCT-GA
130 CAGCTGCCACAACCCTCAGTCCAG-CTGGA
* * * * *
14607566 TCTTAGGC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAA-CGTACGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAAC-AAGCGTACGGGCGCTC
** * ** * * **
14607629 AGCCGGTCGAAGAGGCATAATGCGCAAACTGGGGATTGGCCCGG-TCCACCTCTG-CATGCTGCC
63 AGCCAATCGAAGAGGCAGAATGCGCAAACCAGGGATCGGCCCGGTTCC-CCCCTGTC-TGCCACC
* * *
14607692 AGTCCAGCTGCCACAACCCTCGGTCCAGCTGGG
126 AATCCAGCTGCCACAACCCTCAGTCCAGCTGGA
* *** * *
14607725 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACAAGCGTACGGGCGCTCAG
* * ** * * * * * * *
14607790 CCGACCGGGGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GATCCCCCCTG-CGTGCTATCGAT
65 CCAATCGAAGAGGCAGAATGCGCAAACCAGGGATCGGCCCGGTTCCCCCCTGTC-TGCCACCAAT
* * * * *
14607853 CCTA-CTGCCGCAACCCTCGGTCCGGTTCGA
129 CC-AGCTGCCACAACCCTCAGTCCAGCTGGA
* *
14607883 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14607911 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 68 0.25
159 202 0.74
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACAAGCGTACGGGCGCTCAGC
CAATCGAAGAGGCAGAATGCGCAAACCAGGGATCGGCCCGGTTCCCCCCTGTCTGCCACCAATCC
AGCTGCCACAACCCTCAGTCCAGCTGGA
Found at i:14608644 original size:26 final size:26
Alignment explanation
Indices: 14608606--14608658 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14608596 GCCTCAAAAT
14608606 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14608632 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14608658 C
1 C
14608659 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14608986 original size:159 final size:158
Alignment explanation
Indices: 14608631--14609133 Score: 385
Period size: 158 Copynumber: 3.2 Consensus size: 158
14608621 AACTCCGTAT
** *
14608631 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAACTAAG
* * * * * *
14608696 CAGGATAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCAATCC
66 CAGGACAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTCTCAATCC
*
14608761 TGCTGCCACAACCCTCGGTCCGGTCTGA
131 AGCTGCCACAACCCTCGGTCCGGTCTGA
* * * * ** * *
14608789 TCTTAGA-TTGGGAATGAACTCTGTCTGCAGAAGTCAACCCCCGAAACGAGCGTGCGGGAACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAACTAA
* * * *
14608853 GCCGGCCA-AAGAGGCATATTGCAG-AAGCCGAGGATC-GCCACGATCCCCCTCTACATGCTACT
65 GCAGGACAGAA-AGGCAGAATGC-GCAAGCCGAGGATCGGCC-CGATCCCCC-CTACATGCT-CT
** * * *
14608915 -GGTCCAGTTGCCATAACCCTCGGTCCGG-CTGGG
125 CAATCCAGCTGCCACAACCCTCGGTCCGGTCT-GA
* ** * *
14608948 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGTAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGAACTAA
* * * * * ** * * * * *
14609012 GCCA-GCCGGAGAGGCTGAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTGCGTGCTGTCGAT
65 G-CAGGACAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTCTCAAT
* ** * *
14609076 CCTGCTATCGCAACCCTCGATCCGGTCTGA
129 CCAGCTGCCACAACCCTCGGTCCGGTCTGA
* * *
14609106 TCCTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14609134 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 66, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 8 0.03
158 137 0.52
159 112 0.43
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAACTAAG
CAGGACAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTCTCAATCC
AGCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:14609138 original size:26 final size:26
Alignment explanation
Indices: 14609109--14609159 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14609099 GGTCTGATCC
14609109 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
14609135 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
14609160 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:14609937 original size:159 final size:158
Alignment explanation
Indices: 14609513--14609948 Score: 412
Period size: 159 Copynumber: 2.7 Consensus size: 158
14609503 AACTCCGTAT
* *
14609513 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGTGCACGCAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCG-G---GCGC
* * * * * * *
14609578 TCAGTCGGTCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCAATCCCTCCCTGTGTCATGTC
62 TCAGCCGGTCGGAGAGGCAGAATGCGCAAGCC-AGGATCGGCCCGATCCCTCCCTGCGTCATATC
14609643 GATCCTGCTACCACAACCATCAGTCTAGTCCGA
126 GATCCTGCTACCACAACCATCAGTCTAGTCCGA
* * * * * * ** *
14609676 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACACACGAAATGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * * * *
14609740 GCTGGTCGGAGAGGCAAAATACGAAAGTCAGGGGTCGGCCCGGTACCC-CTCTGCGTGC-TATCG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCA-GGATCGGCCCGAT-CCCTCCCTGCGT-CATATCG
* * * ** *
14609803 AT-CTCGCTACCACAACCCTCGGTCTGGTTGGG
127 ATCCT-GCTACCACAACCATCAGTCTAGTCCGA
* * *
14609835 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
**
14609900 CCGACCGGAGAGGCAGAATGCGCAAGCCTAGGATCGGCCCGATCCCTCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCC-AGGATCGGCCCGATCCCTCC
14609949 TACCTGTTGT
Statistics
Matches: 212, Mismatches: 53, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
158 6 0.03
159 153 0.72
160 6 0.03
162 2 0.01
163 45 0.21
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGATCGGCCCGATCCCTCCCTGCGTCATATCGATCC
TGCTACCACAACCATCAGTCTAGTCCGA
Found at i:14610708 original size:26 final size:26
Alignment explanation
Indices: 14610671--14610720 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14610661 GCTCAAAATC
*
14610671 TTAGACTAGGAATGAACTTTGTATAG
1 TTAGACTAGGAATGAACTTCGTATAG
14610697 TTAGA-TATGGAATGAACTTCGTAT
1 TTAGACTA-GGAATGAACTTCGTAT
14610721 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTTCGTATAG
Found at i:14611054 original size:159 final size:156
Alignment explanation
Indices: 14610697--14611195 Score: 378
Period size: 159 Copynumber: 3.2 Consensus size: 156
14610687 CTTTGTATAG
* * *
14610697 TTAGATATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTTAGTC
1 TTAGA-ATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGTC
* * *
14610762 GGCCAGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCAACGTGCTGTCGATCCTGC
65 GGCCAGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCAACATGCTGCCGATCCCGC
** *
14610827 TACTTCAACCCTTGGTCCGGTCTGATC
130 TACCACAACCCTCGGTCCGGTCTGATC
* * * ** *
14610854 CTAGATTGGGAATGAACTACGTATGCATAAGTAAACCCACGAAACGAGCGTACGGGTGCTGAGTC
1 TTAGAAT-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGTC
* * * * * * **
14610919 GG-CTGAAGAGGCATAATGCGCAAGTCGGGTATTGGCCCGGTCACCCTCTGCATGCTGCC-AGTC
65 GGCCAG-AGAGGCAGAATGCGCAAGCCGGG-ATCGGCCCGATC-CCCCCAACATGCTGCCGA-TC
* *
14610982 CCGCTGCCACAACCCTCGGTCCGG-CTGGGGT-
126 CCGCTACCACAACCCTCGGTCCGGTCT--GATC
* * * * * * * *
14611013 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGAGTGCGAGTGCTCG-GC
1 TTAGA-ATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCT-GAGT
* * * ** * ** * ** *
14611077 CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACTCGATCCCCCCTGCGTGCTATCGATCCT
64 CGGCCAGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCCAACATGCTGCCGATCCC
** * * * **
14611142 GCTGTCGCAACCCTTGGTTCGGTCCAATC
128 GCTACCACAACCCTCGGTCCGGTCTGATC
* *
14611171 TTAGACTGGAATGAACTCCGTATGC
1 TTAGAATGGAATGAACTACGTATGC
14611196 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 96 0.36
158 51 0.19
159 109 0.41
160 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
TTAGAATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGTCG
GCCAGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCAACATGCTGCCGATCCCGCT
ACCACAACCCTCGGTCCGGTCTGATC
Found at i:14611204 original size:25 final size:26
Alignment explanation
Indices: 14611170--14611221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14611160 TCGGTCCAAT
14611170 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14611195 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14611221 C
1 C
14611222 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14611489 original size:171 final size:168
Alignment explanation
Indices: 14611194--14611561 Score: 400
Period size: 171 Copynumber: 2.2 Consensus size: 168
14611184 AACTCCGTAT
* ** * * ** *
14611194 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCGTACGTTCGCTCAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTACGGACGCTAAG
* * * *
14611259 TCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTGCGTGCTGTTGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCCTGCGTGCTGTCGATC
* *
14611324 CCGCTGTCGGTCCTACTGCCACAACCCTCGATCCGA-CTGGG
130 CCGCTGTCGGTCCTACTG-C-CAACCCTCAATCCGATCT-GA
* *
14611365 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTGCGGAGGCTAAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTACGGACGCTAAG
* * * * *
14611430 CCGGTCGGAGGGGCAGAATGTGCAAG-TGAAGGATCGGC-CTGATCCCCCCCTGTGTGCTGTCGA
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCG-AGGATCAGCTC-GATCCCCCCCTGCGTGCTGTCGA
* * * *
14611493 TCCTGCTGTTGGTCCTGCTGCTAACCCTCAATCCGATCTGA
128 TCCCGCTGTCGGTCCTACTGCCAACCCTCAATCCGATCTGA
* *
14611534 TCTTAGACTGTGAATGAACTCCATATGC
1 GCTTAGACTG-GAATGAACTCCGTATGC
14611562 TTAGACATGG
Statistics
Matches: 165, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
168 2 0.01
169 37 0.22
170 5 0.03
171 120 0.73
172 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (168 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTACGGACGCTAAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCCTGCGTGCTGTCGATCC
CGCTGTCGGTCCTACTGCCAACCCTCAATCCGATCTGA
Found at i:14611574 original size:26 final size:26
Alignment explanation
Indices: 14611535--14611587 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14611525 CCGATCTGAT
14611535 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGTGAATGAACTCCATATG
*
14611561 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCATATG
14611587 C
1 C
14611588 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCATATG
Found at i:14613071 original size:26 final size:26
Alignment explanation
Indices: 14613031--14613081 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14613021 CGGTTTGATC
14613031 TTAGACTGGGAATGAACGT-CGTATGT
1 TTAGACTGGGAATGAAC-TCCGTATGT
*
14613057 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14613082 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:14614143 original size:26 final size:26
Alignment explanation
Indices: 14614114--14614166 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14614104 CCGATCTAAT
14614114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14614140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14614166 C
1 C
14614167 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14614397 original size:355 final size:351
Alignment explanation
Indices: 14613932--14614898 Score: 1001
Period size: 355 Copynumber: 2.7 Consensus size: 351
14613922 ACAAACGTCG
* * * * *
14613932 GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTG
1 GTCCAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCGTG
* ** * * *
14613997 CAGGCACTCAGCTGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGTGT
65 CGGGTGCTCAGC-GGACGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCCCC-CTGCGT
* * * *
14614062 GCTGTCGATCCTGCTGCTGGTTCTACTACCACAACCTTCAGTCCGATCTAATCTTAGACTGGGAA
128 GCTGTCGATCCTGCTGCT-G--CTACTACCACAACC-TCGGTCCGGTCTGATCTTAGACTAGGAA
14614127 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
189 TGAACTCCGTATGCTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
* * * * * *
14614192 TCGGGCGCTGAGCC-GGCC-A-GAA-AGGCATAATGCACAAGTCGGGGATCGATCC-GGTCCCCC
253 GCGGGCGCTGAGCCAGGCCGACAAAGAGGCATAATGCACAAGCCAGGGATCG-GCCTGATCCCCC
* ** *
14614252 TTTGCGTGCTGTCGG-TCTCGCTGCCACAACCCTCG
317 TCTGCGTGCTACCGGTTC-CGCTGCCACAACCCTCA
*
14614287 GT-CTGACTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGT
1 GTCCAG-CTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGT
* * ** ** * *
14614351 ACGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCATAAGTTAGGGATCAACCCGATCCACCCTACG
64 GCGGGTGCTCAG-CGGACGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCC-CCCTGCG
* * * * **
14614416 TGC--T--A--CTGAT-C--CTACTGCCGCAACCCTCGGTCCGGTCTGATGTTAGACTTTGAATG
127 TGCTGTCGATCCTGCTGCTGCTACTACCACAA-CCTCGGTCCGGTCTGATCTTAGACTAGGAATG
*
14614472 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTCTGCCTAAGTCAACCCACAAAATGAGCGTGC
191 AACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC
* **
14614537 GAGCGCTGAGCCGATTAGAGAGGCCGACCAAAGAGGCATAATGCGTAAGCCAGGGATCGGCCTGA
255 GGGCGCTGAGCC--------AGGCCGA-CAAAGAGGCATAATGCACAAGCCAGGGATCGGCCTGA
14614602 TCCCCCTCTGCGTGCTACCGGTTCCGCTGCCACAACCCTCA
311 TCCCCCTCTGCGTGCTACCGGTTCCGCTGCCACAACCCTCA
*
14614643 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTG
1 GTCCAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTG
* * * * * *
14614708 CGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCTCCCTGCGTG
65 CGGGTGCTCAGCGGAC-GGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTGCGTG
* *
14614773 CTGTCGATCCTACTGCTG---C-A--AC--CCTCGGTTCGGTCTGATCTTAGACTAGGAATGAAC
129 CTGTCGATCCTGCTGCTGCTACTACCACAACCTCGGTCCGGTCTGATCTTAGACTAGGAATGAAC
* * * *
14614830 TCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACGCACGAAATGAGCGTGCGGA
194 TCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGG
14614895 CGCT
258 CGCT
14614899 CAGTCGACAA
Statistics
Matches: 507, Mismatches: 73, Indels: 64
0.79 0.11 0.10
Matches are distributed among these distances:
343 104 0.21
344 5 0.01
348 1 0.00
349 4 0.01
351 1 0.00
352 4 0.01
353 2 0.00
354 2 0.00
355 213 0.42
356 159 0.31
357 5 0.01
358 1 0.00
359 1 0.00
361 4 0.01
362 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (351 bp):
GTCCAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGCGTGC
GGGTGCTCAGCGGACGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTGCGTGCT
GTCGATCCTGCTGCTGCTACTACCACAACCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTC
CGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGC
TGAGCCAGGCCGACAAAGAGGCATAATGCACAAGCCAGGGATCGGCCTGATCCCCCTCTGCGTGC
TACCGGTTCCGCTGCCACAACCCTCA
Found at i:14614687 original size:356 final size:355
Alignment explanation
Indices: 14614246--14614892 Score: 933
Period size: 356 Copynumber: 1.8 Consensus size: 355
14614236 ATCGATCCGG
* ** * *
14614246 TCCCCCTTTGCGTGCTGTCGGTCTCGCTGCCACAACCCTCGGTCTGACTGAGGCTTAGACATGGA
1 TCCCCCTCTGCGTGCTACCGGTCTCGCTGCCACAACCCTCAGTCAGACTGAGGCTTAGACATGGA
* *
14614311 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAGTCG-GTCGGAGAG
66 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAGCCGACT-GGAGAG
* * **
14614375 GTAGAATGCATAAGTTAGGGATCAACCCGATCCACCCTACGTGCTACT-GATCCTACTGCCGCAA
130 GCAGAATGCACAAGCCAGGGATCAACCCGAT-CACCCTACGTGCT-CTCGATCCTACTGCCGCAA
* ** * *
14614439 CCCTCGGTCCGGTCTGATGTTAGACTTTGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
193 CCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCC
*
14614504 GTCTGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTGAGCCGATTAGAGAGGCCGACCAAA
258 GTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTGAGCCGATTAGAGAGGCCGACCAAA
14614569 GAGGCATAATGCGTAAGCCAGGGATCGGCCTGA
323 GAGGCATAATGCGTAAGCCAGGGATCGGCCTGA
*
14614602 TCCCCCTCTGCGTGCTACCGGT-TCCGCTGCCACAACCCTCAGTCCAG-CTGGGGCTTAGACATG
1 TCCCCCTCTGCGTGCTACCGGTCT-CGCTGCCACAACCCTCAGT-CAGACTGAGGCTTAGACATG
* *
14614665 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGACTGGAGA
64 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAGCCGACTGGAGA
* * * * * * * * *
14614730 GGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCTCCCTGCGTGCTGTCGATCCTACTGCTGCAAC
129 GGCAGAATGCACAAGCCAGGGATCAACCCGATCACCCTACGTGCTCTCGATCCTACTGCCGCAAC
*
14614795 CCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCG
194 CCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCG
* *
14614860 TATGCCTAAGTCAACGCACGAAATGAGCGTGCG
259 TATGCCTAAGTCAACCCACAAAATGAGCGTGCG
14614893 GACGCTCAGT
Statistics
Matches: 255, Mismatches: 32, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
354 1 0.00
355 117 0.46
356 134 0.53
357 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
TCCCCCTCTGCGTGCTACCGGTCTCGCTGCCACAACCCTCAGTCAGACTGAGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAGCCGACTGGAGAGG
CAGAATGCACAAGCCAGGGATCAACCCGATCACCCTACGTGCTCTCGATCCTACTGCCGCAACCC
TCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTA
TGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCGCTGAGCCGATTAGAGAGGCCGACCAAAGAG
GCATAATGCGTAAGCCAGGGATCGGCCTGA
Found at i:14614848 original size:26 final size:26
Alignment explanation
Indices: 14614812--14614864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14614802 TCGGTCTGAT
14614812 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14614838 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14614864 C
1 C
14614865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14616079 original size:26 final size:26
Alignment explanation
Indices: 14616036--14616086 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14616026 TTGGTCCGAT
* *
14616036 CTTAGACTAGGAATGAACTCTGTATA
1 CTTAGACTAGGAAGGAACTCCGTATA
* *
14616062 CTTAGACTGGGGAGGAACTCCGTAT
1 CTTAGACTAGGAAGGAACTCCGTAT
14616087 GCCTAAGCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCCGTATA
Found at i:14616785 original size:159 final size:157
Alignment explanation
Indices: 14616429--14617050 Score: 525
Period size: 158 Copynumber: 3.9 Consensus size: 157
14616419 AACTCCATAT
* * *
14616429 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14616494 CCGACTGAAGAGGTAAAATGCGCAAGACGGGGACCGACCCGGTGCCCCCTGCGTGCTATCGATCC
66 CCGACTGGAGAGGCATAATGCGCAAGACGGGGATCGGCCCGAT-CCCCCTGCGTGCTATCGGTCC
* *** * ***
14616559 TGCTACTGTAACCCTCGGTCCG-GTCCAA
130 TGCTGCCACAACCCTCGGTCCGACT-GGG
* ** * * * *
14616587 TCTTAGAC-TGTGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * *
14616651 GCCGA-TCGGAGAGGCATAATGCGCAAGTTGGGGATCGGCCCGATCCCTCACTGCGTACTATTGG
65 GCCGACT-GGAGAGGCATAATGCGCAAGACGGGGATCGGCCCGATCCC-C-CTGCGTGCTATCGG
* *
14616715 TCCCGCTGCCACAACCCTCAGTCCGACTGGG
127 TCCTGCTGCCACAACCCTCGGTCCGACTGGG
* * * *
14616746 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACG-AACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * * * **
14616810 CCGGCTAGAGAAACCTAATGCGTAAGCCAGGAATCAGCCCGATCCCCTTCTGCGTGCTGCCGGTC
66 CCGACTGGAGAGGCATAATGCGCAAGACGGGGATCGGCCCGATCCCC--CTGCGTGCTATCGGTC
* *
14616875 CTACTGCCACAACCCTTGGTCCGACTGGG
129 CTGCTGCCACAACCCTCGGTCCGACTGGG
* * * * * *
14616904 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGTGTACAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * * *
14616969 TTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCC-AGTCCCCCCTACGTGCTATCGATC
66 CCGACTGGAGAGGCATAATGCGCAAGACGGGGATCGGCCCGA-T-CCCCCTGCGTGCTATCGGTC
*
14617033 CTGCTGCCGCAACCCTCG
129 CTGCTGCCACAACCCTCG
14617051 TCAATCCGAT
Statistics
Matches: 366, Mismatches: 87, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.02
158 242 0.66
159 110 0.30
160 7 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACTGGAGAGGCATAATGCGCAAGACGGGGATCGGCCCGATCCCCCTGCGTGCTATCGGTCCT
GCTGCCACAACCCTCGGTCCGACTGGG
Found at i:14617104 original size:26 final size:26
Alignment explanation
Indices: 14617061--14617113 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14617051 TCAATCCGAT
*
14617061 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14617087 CTTAGACTGGGGAA-GAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
14617113 C
1 C
14617114 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14617551 original size:158 final size:157
Alignment explanation
Indices: 14617298--14617797 Score: 436
Period size: 158 Copynumber: 3.2 Consensus size: 157
14617288 CTTCGTAGGG
* * * * * * * *
14617298 TTAGACATGGAATGAATTCCGTATGACTAAGCCAACCCATGAAATGAACATGCGGGCGCTCAGTC
1 TTAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
** * * * * *
14617363 GGTTGGAGAGGCAGAATGCGTAAACTGAGGATCGACCCAGTCCCCTCTAGGTGCTATCGATCCTG
65 GACTAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCTCTAGGTGCTATCGATCCTG
*
14617428 CTGTCGCAACCCTCGGTCTGATCTGATC
130 CTGCCGCAACCCTCGGTCTGATCTGATC
* * * * *
14617456 TTAGATTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTGAGCC
1 TTAGAAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
* * * * *
14617521 GACT-GAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGT-TAGTC
65 GACTAG-AGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGT-CCCCTCTAGGTGCTATCGA-TC
* * * *
14617584 CCGCTGCCACAACCCTCAGTCCGA-CTGGAGT-
127 CTGCTGCCGCAACCCTCGGTCTGATCT-GA-TC
* * * * * *
14617615 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAACGGGCGTGCGGGGGCTCAGCT
1 TTAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
* * * *
14617680 GGCTAGACAGGCAGAATGCATAAGCC-AGGGATCGGCCCGGTCCCCCCT-GCGTGCTATCGATCC
65 GACTAGAGAGGCAGAATGCGTAAGCCGA-GGATCGGCCCGGTCCCCTCTAG-GTGCTATCGATCC
* * * * *
14617743 TGCTACCGTAACCCTCGATCTAATCAGATC
128 TGCTGCCGCAACCCTCGGTCTGATCTGATC
* *
14617773 TTAGACTAGGAATGAACTCCGTATG
1 TTAGAAT-GGAATGAACTCCATATG
14617798 ATTAGACTGG
Statistics
Matches: 268, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.01
158 138 0.51
159 123 0.46
160 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
TTAGAATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCG
ACTAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCTCTAGGTGCTATCGATCCTGC
TGCCGCAACCCTCGGTCTGATCTGATC
Found at i:14618873 original size:159 final size:158
Alignment explanation
Indices: 14618524--14618957 Score: 509
Period size: 159 Copynumber: 2.7 Consensus size: 158
14618514 GTATGCGTAG
* * *
14618524 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCT
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCC
* * * * * *
14618589 GAAGAGGCAGATTGCGCAAGCCGGAGATCGACCCTGTCCCCC-CTGCGTGCTGTCGATCCTACTG
66 GAAGAGGCAGAATGCGCAAGCAGG-GATCGGCCCGGTCCCCCTCTGCGTGCTGTAGATCCCACTG
* * * *
14618653 TCGCAACCCTCGGTCTGGTCTGATCTTAG
130 CCACAACCCTCGGTCTGGTCTGAGCTTAC
* * * * *
14618682 AC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGAGCTGAGCCGGC
1 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGC
* * *
14618746 CGAAGAGGCATAATGCACAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTA-AGTCCCGC
65 CGAAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTAGA-TCCCAC
*
14618810 TGCCACAACCCTCGGTCTGG-CTGGGGCTTAC
128 TGCCACAACCCTCGGTCTGGTCT-GAGCTTAC
* * *
14618841 ACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAGCCGGTC
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCC
* * * * *
14618906 GGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCT-TGTGTGCTG
66 GAAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCCTCTGCGTGCTG
14618958 CCGATCCTAC
Statistics
Matches: 232, Mismatches: 38, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
157 1 0.00
158 98 0.42
159 132 0.57
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.17
Consensus pattern (158 bp):
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCC
GAAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTAGATCCCACTGC
CACAACCCTCGGTCTGGTCTGAGCTTAC
Found at i:14619035 original size:26 final size:26
Alignment explanation
Indices: 14618994--14619046 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14618984 CCGATCCGAT
14618994 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
* * *
14619020 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
14619046 C
1 C
14619047 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:14619696 original size:152 final size:153
Alignment explanation
Indices: 14619420--14619718 Score: 528
Period size: 152 Copynumber: 2.0 Consensus size: 153
14619410 TTTACCAAGT
* * *
14619420 AATTAGTTGTTGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
* * *
14619485 CTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGGGGCTCCGTCGTCGGATTTAT
66 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
*
14619550 TAAA-GAAAAAACAAAATCATCC
131 TAAAGGAAAAAAAAAAATCATCC
14619572 AATTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
1 AATTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
14619637 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
66 CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
14619702 TAAAGGAAAAAAAAAAA
131 TAAAGGAAAAAAAAAAA
14619719 AAAAAAAAAA
Statistics
Matches: 139, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
152 128 0.92
153 11 0.08
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (153 bp):
AATTAATTATTGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGAAAATTCC
CTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCGGATTAAT
TAAAGGAAAAAAAAAAATCATCC
Found at i:14619780 original size:1 final size:1
Alignment explanation
Indices: 14619776--14619812 Score: 74
Period size: 1 Copynumber: 37.0 Consensus size: 1
14619766 TCAAAAATTC
14619776 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14619813 CCTGGAGCGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14620175 original size:20 final size:20
Alignment explanation
Indices: 14620140--14620189 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
14620130 CGGTGGGATT
* *
14620140 TCGCCGGGATTCTGGAAATTC
1 TCGCC-GGAATCTGGAAAATC
14620161 TCGCCGGAATCTGGAAAATC
1 TCGCCGGAATCTGGAAAATC
14620181 TCGCCGGAA
1 TCGCCGGAA
14620190 GTTCACCGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (20 bp):
TCGCCGGAATCTGGAAAATC
Found at i:14620368 original size:26 final size:25
Alignment explanation
Indices: 14620332--14620381 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
14620322 TGGGAAATTC
14620332 CCAGAAATTTCCAGAAAATTTTTTCG
1 CCAGAAATTTCCAG-AAATTTTTTCG
*
14620358 CCAGAAATTTCTAGAAATTTTTTC
1 CCAGAAATTTCCAGAAATTTTTTC
14620382 TCACTCCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (25 bp):
CCAGAAATTTCCAGAAATTTTTTCG
Found at i:14620755 original size:4 final size:4
Alignment explanation
Indices: 14620746--14620855 Score: 52
Period size: 4 Copynumber: 26.8 Consensus size: 4
14620736 AGAAAAGAAA
14620746 AAAT AAAT AAAT AAAT -AA- AAAT AAA- ATAAT -AAT -AAT ATAAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT A-AAT AAAT
* * * * *
14620790 AAAT ATAT AACT ATAT AAAT AAAAT ACATAT AAATCT AATCT GAAT AAAAT
1 AAAT AAAT AAAT AAAT AAAT -AAAT A-A-AT AAA--T AA-AT AAAT -AAAT
14620841 AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAA
14620856 GATATACATA
Statistics
Matches: 82, Mismatches: 10, Indels: 28
0.68 0.08 0.23
Matches are distributed among these distances:
3 14 0.17
4 48 0.59
5 14 0.17
6 6 0.07
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:14620778 original size:3 final size:3
Alignment explanation
Indices: 14620759--14620891 Score: 52
Period size: 3 Copynumber: 43.3 Consensus size: 3
14620749 TAAATAAATA
*
14620759 AAT AAA AAT AA- AAT AAT AAT AAT -AT AAT AAT AAAT ATAT AACT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT A-AT AA-T A-AT
* *
14620806 AAAT AA- AAT ACAT -AT AA- ATCT AAT -CT GAAT AA- AAT AAAT AAAT
1 -AAT AAT AAT A-AT AAT AAT A-AT AAT AAT -AAT AAT AAT -AAT -AAT
14620849 AAAT AA- AGAT -AT ACAT AAT AAT AAT AAT AAT AAT AAT AA- AAT A
1 -AAT AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
14620892 CATAGAATAC
Statistics
Matches: 103, Mismatches: 6, Indels: 42
0.68 0.04 0.28
Matches are distributed among these distances:
2 17 0.17
3 55 0.53
4 29 0.28
5 2 0.02
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:14620797 original size:14 final size:14
Alignment explanation
Indices: 14620747--14620810 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
14620737 GAAAAGAAAA
*
14620747 AATAAATAAATAAAT
1 AATAAATATAT-AAT
14620762 AA-AAATA-A-AAT
1 AATAAATATATAAT
14620773 AAT-AATAATATAAT
1 AATAAAT-ATATAAT
14620787 AATAAATATATAACT
1 AATAAATATATAA-T
14620802 ATATAAATA
1 A-ATAAATA
14620811 AAATACATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
11 8 0.19
12 1 0.02
13 2 0.05
14 17 0.40
15 7 0.17
16 7 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAATATATAAT
Found at i:14620799 original size:11 final size:12
Alignment explanation
Indices: 14620746--14620881 Score: 61
Period size: 11 Copynumber: 12.2 Consensus size: 12
14620736 AGAAAAGAAA
14620746 AAATA-AATAAAT
1 AAATATAAT-AAT
14620758 AAATA-AA-AAT
1 AAATATAATAAT
14620768 AAA-ATAATAAT
1 AAATATAATAAT
14620779 -AATATAATAAT
1 AAATATAATAAT
14620790 AAATAT-ATAACT
1 AAATATAATAA-T
14620802 --ATAT-A-AAT
1 AAATATAATAAT
14620810 AAA-ATACAT-AT
1 AAATATA-ATAAT
* *
14620821 AAATCTAAT-CT
1 AAATATAATAAT
* *
14620832 GAATAAAATAAAT
1 AAATATAAT-AAT
14620845 AAATA-AATAA-
1 AAATATAATAAT
*
14620855 AGATATACATAAT
1 AAATATA-ATAAT
14620868 -AATAATAATAAT
1 AAAT-ATAATAAT
14620880 AA
1 AA
14620882 TAATAAAATA
Statistics
Matches: 97, Mismatches: 9, Indels: 35
0.69 0.06 0.25
Matches are distributed among these distances:
8 1 0.01
9 5 0.05
10 20 0.21
11 33 0.34
12 29 0.30
13 9 0.09
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (12 bp):
AAATATAATAAT
Found at i:14621087 original size:1 final size:1
Alignment explanation
Indices: 14621077--14621157 Score: 54
Period size: 1 Copynumber: 81.0 Consensus size: 1
14621067 CAACTCAACA
* ** * ** ** * * *
14621077 TTTTTATTTTTTGATTTTTTTTATTTTGATTTTTTGATTTTTTTTTGTTTTTTGTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
14621142 TTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTT
14621158 GGTCGAAGTC
Statistics
Matches: 59, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:14621099 original size:17 final size:16
Alignment explanation
Indices: 14621077--14621157 Score: 71
Period size: 15 Copynumber: 5.1 Consensus size: 16
14621067 CAACTCAACA
14621077 TTTTTATTTTTTGATTT
1 TTTTTATTTTTTG-TTT
14621094 TTTTTA--TTTTGATTT
1 TTTTTATTTTTTG-TTT
*
14621109 TTTGATTTTTTTTTGTTT
1 TTT--TTATTTTTTGTTT
*
14621127 TTTGT-TTTTTTGTTT
1 TTTTTATTTTTTGTTT
*
14621142 TTTTTGTTTTTT-TTT
1 TTTTTATTTTTTGTTT
14621157 T
1 T
14621158 GGTCGAAGTC
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
15 30 0.54
16 7 0.12
17 8 0.14
18 6 0.11
19 5 0.09
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (16 bp):
TTTTTATTTTTTGTTT
Found at i:14621103 original size:15 final size:14
Alignment explanation
Indices: 14621076--14621157 Score: 66
Period size: 14 Copynumber: 5.8 Consensus size: 14
14621066 TCAACTCAAC
*
14621076 ATTTTTATTTTTTG
1 ATTTTTTTTTTTTG
14621090 ATTTTTTTTATTTTG
1 ATTTTTTTT-TTTTG
14621105 ATTTTTTGATTTTTT-
1 ATTTTTT--TTTTTTG
14621120 -TTTGTTTTTTGTTT-
1 ATTT-TTTTTT-TTTG
14621134 -TTTTGTTTTTTTTG
1 ATTTT-TTTTTTTTG
14621148 -TTTTTTTTTT
1 ATTTTTTTTTT
14621158 GGTCGAAGTC
Statistics
Matches: 60, Mismatches: 1, Indels: 15
0.79 0.01 0.20
Matches are distributed among these distances:
13 13 0.22
14 26 0.43
15 15 0.25
16 4 0.07
17 2 0.03
ACGTcount: A:0.07, C:0.00, G:0.09, T:0.84
Consensus pattern (14 bp):
ATTTTTTTTTTTTG
Found at i:14621108 original size:23 final size:23
Alignment explanation
Indices: 14621076--14621121 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14621066 TCAACTCAAC
*
14621076 ATTTTTATTTTTTGATTTTTTTT
1 ATTTTGATTTTTTGATTTTTTTT
14621099 ATTTTGATTTTTTGATTTTTTTT
1 ATTTTGATTTTTTGATTTTTTTT
14621122 TGTTTTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (23 bp):
ATTTTGATTTTTTGATTTTTTTT
Found at i:14621127 original size:8 final size:8
Alignment explanation
Indices: 14621083--14621154 Score: 74
Period size: 8 Copynumber: 8.8 Consensus size: 8
14621073 AACATTTTTA
*
14621083 TTTTTTGA
1 TTTTTTGT
14621091 TTTTTT-T
1 TTTTTTGT
* *
14621098 TATTTTGA
1 TTTTTTGT
14621106 TTTTTTGAT
1 TTTTTTG-T
*
14621115 TTTTTTTT
1 TTTTTTGT
14621123 GTTTTTTGT
1 -TTTTTTGT
14621132 TTTTTTGTT
1 TTTTTTG-T
14621141 TTTTTTGT
1 TTTTTTGT
14621149 TTTTTT
1 TTTTTT
14621155 TTTGGTCGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
7 5 0.09
8 27 0.51
9 21 0.40
ACGTcount: A:0.06, C:0.00, G:0.10, T:0.85
Consensus pattern (8 bp):
TTTTTTGT
Found at i:14621147 original size:24 final size:24
Alignment explanation
Indices: 14621083--14621157 Score: 91
Period size: 24 Copynumber: 3.1 Consensus size: 24
14621073 AACATTTTTA
* * *
14621083 TTTTTTGATTTTTTT-TATTTTGA
1 TTTTTTGTTTTTTTTGTTTTTTGT
14621106 TTTTTTGATTTTTTTTTGTTTTTTGT
1 TTTTTTG--TTTTTTTTGTTTTTTGT
14621132 TTTTTTGTTTTTTTTGTTTTTT-T
1 TTTTTTGTTTTTTTTGTTTTTTGT
14621155 TTT
1 TTT
14621158 GGTCGAAGTC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
23 11 0.24
24 15 0.33
25 7 0.15
26 13 0.28
ACGTcount: A:0.05, C:0.00, G:0.09, T:0.85
Consensus pattern (24 bp):
TTTTTTGTTTTTTTTGTTTTTTGT
Found at i:14621155 original size:9 final size:9
Alignment explanation
Indices: 14621106--14621155 Score: 68
Period size: 9 Copynumber: 5.7 Consensus size: 9
14621096 TTTATTTTGA
14621106 TTTTTTGATT
1 TTTTTTG-TT
*
14621116 TTTTTT-TG
1 TTTTTTGTT
14621124 TTTTTTG-T
1 TTTTTTGTT
14621132 TTTTTTGTT
1 TTTTTTGTT
14621141 TTTTTTGTT
1 TTTTTTGTT
14621150 TTTTTT
1 TTTTTT
14621156 TTGGTCGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
8 14 0.39
9 16 0.44
10 6 0.17
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:14621245 original size:41 final size:39
Alignment explanation
Indices: 14621166--14621946 Score: 1033
Period size: 41 Copynumber: 18.9 Consensus size: 39
14621156 TTGGTCGAAG
14621166 TCCTCTAAACAGAGAGCTCAACGACTTTTG-AAAGTAAATTGC
1 TCCTCTAAACAGAG-G--CAACGAC-TTTGAAAAGTAAATTGC
14621208 TCCTCTAAACAGAGGCAACGGAACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAAC-G-ACTTTGAAAAGTAAATTGC
* *
14621249 TCCTCTCAACAGAGGTACCACGGACTTTGGAAAAGTAAATTGC
1 TCCTCTAAACAGAGG--CAAC-GACTTT-GAAAAGTAAATTGC
14621292 TCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCA--ACGACTTTGAAAAGTAAATTGC
*
14621333 TCCTCTAAACAGAGGCACTACGACTTTGGAAAAATAAATTGC
1 TCCTCTAAACAGAGGCA--ACGACTTT-GAAAAGTAAATTGC
*
14621375 TCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCA--ACGACTTTGAAAAGTAAATTGC
14621416 TCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAACG-ACTTTGAAAAGTAAATTGC
14621456 TCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAACG-ACTTTGAAAAGTAAATTGC
*
14621496 TCCTCTAAACAGAGGTACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGG--CAACGACTTTGAAAAGTAAATTGC
14621537 TCCTCTAAACAGAGGCCAACGAACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGG-CAACG-ACTTTGAAAAGTAAATTGC
* *
14621578 TCCTCTAAACAGAGGTACCACGACTTTGAAAAATAAATTGC
1 TCCTCTAAACAGAGG--CAACGACTTTGAAAAGTAAATTGC
*
14621619 TCCTCTAAACAGAGGCAACGGAACTTTGAAAAATAAATTGC
1 TCCTCTAAACAGAGGCAAC-G-ACTTTGAAAAGTAAATTGC
*
14621660 TCCTCTAAACAGAGGTACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGG--CAACGACTTTGAAAAGTAAATTGC
* *
14621701 TCCTCTCAACAGAGGTACCACGACTTTGGAAAAGTAAATTGC
1 TCCTCTAAACAGAGG--CAACGACTTT-GAAAAGTAAATTGC
*
14621743 TCCTCTAAACAGAGGCAACGGAACTTTGAAAAATAAATTGC
1 TCCTCTAAACAGAGGCAAC-G-ACTTTGAAAAGTAAATTGC
*
14621784 TCCTCTAAACAGAGGTAACGAACTTTGAAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAACG-ACTTTG-AAAAGTAAATTGC
14621825 TCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCA--ACGAC-TTTGAAAAGTAAATTGC
14621867 TCCTCTAAACAGAGGGCACCACGACTTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGA-GGCA--ACGAC-TTTGAAAAGTAAATTGC
*
14621910 TCCTCTAAACAGAGGCAACGAACTTGGAAAAGTAAAT
1 TCCTCTAAACAGAGGCAACG-ACTTTGAAAAGTAAAT
14621947 ACTCCTAGAC
Statistics
Matches: 685, Mismatches: 27, Indels: 56
0.89 0.04 0.07
Matches are distributed among these distances:
39 10 0.01
40 111 0.16
41 340 0.50
42 137 0.20
43 87 0.13
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (39 bp):
TCCTCTAAACAGAGGCAACGACTTTGAAAAGTAAATTGC
Found at i:14623079 original size:1 final size:1
Alignment explanation
Indices: 14623073--14623097 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
14623063 CCTGGATCTC
14623073 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
14623098 ATCAAAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:14623163 original size:8 final size:8
Alignment explanation
Indices: 14623133--14623187 Score: 51
Period size: 8 Copynumber: 7.1 Consensus size: 8
14623123 AATTTGAATA
14623133 TCTTTTTT
1 TCTTTTTT
* *
14623141 TCATTTTC
1 TCTTTTTT
*
14623149 TCATTTTT
1 TCTTTTTT
14623157 TCTTTTTT
1 TCTTTTTT
**
14623165 T-TTCCTT
1 TCTTTTTT
14623172 T-TTTTTT
1 TCTTTTTT
14623179 TCTTTTTT
1 TCTTTTTT
14623187 T
1 T
14623188 TTTCATCTTC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 10 0.26
8 28 0.74
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.82
Consensus pattern (8 bp):
TCTTTTTT
Found at i:14623172 original size:11 final size:10
Alignment explanation
Indices: 14623152--14623189 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
14623142 CATTTTCTCA
14623152 TTTTTTCTTT
1 TTTTTTCTTT
14623162 TTTTTTCCTTTT
1 TTTTTT-C-TTT
14623174 TTTTTTCTTT
1 TTTTTTCTTT
14623184 TTTTTT
1 TTTTTT
14623190 TCATCTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 2 0.08
12 9 0.35
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:14623190 original size:11 final size:11
Alignment explanation
Indices: 14623152--14623205 Score: 72
Period size: 11 Copynumber: 4.7 Consensus size: 11
14623142 CATTTTCTCA
14623152 TTTTTTCTTTT
1 TTTTTTCTTTT
*
14623163 TTTTTCCTTTT
1 TTTTTTCTTTT
14623174 TTTTTTCTTTT
1 TTTTTTCTTTT
*
14623185 TTTTTTCATCTTC
1 TTTTTTC-T-TTT
14623198 TTTTTTCT
1 TTTTTTCT
14623206 CATTTTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
11 27 0.71
12 2 0.05
13 9 0.24
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:14623201 original size:26 final size:25
Alignment explanation
Indices: 14623135--14623212 Score: 81
Period size: 26 Copynumber: 3.2 Consensus size: 25
14623125 TTTGAATATC
* *
14623135 TTTTTTTCATTTTCTCATTTTTTCTT
1 TTTTTTTCATCTTCT-TTTTTTTCTT
14623161 TTTTTTTC--CTT-TTTTTTTTCTTT
1 TTTTTTTCATCTTCTTTTTTTTC-TT
* *
14623184 TTTTTTTCATCTTCTTTTTTCTCAT
1 TTTTTTTCATCTTCTTTTTTTTCTT
14623209 TTTT
1 TTTT
14623213 CATCTATTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
22 7 0.16
23 11 0.25
24 2 0.05
25 8 0.18
26 16 0.36
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.79
Consensus pattern (25 bp):
TTTTTTTCATCTTCTTTTTTTTCTT
Found at i:14623212 original size:11 final size:11
Alignment explanation
Indices: 14623152--14623212 Score: 61
Period size: 12 Copynumber: 5.3 Consensus size: 11
14623142 CATTTTCTCA
14623152 TTTTTTCT-TT
1 TTTTTTCTCTT
*
14623162 TTTTTTCCTTTT
1 TTTTTT-CTCTT
*
14623174 TTTTTTCTTTT
1 TTTTTTCTCTT
14623185 TTTTTTCATCTT
1 TTTTTTC-TCTT
14623197 CTTTTTTCTCATT
1 -TTTTTTCTC-TT
14623210 TTT
1 TTT
14623213 CATCTATTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
10 6 0.13
11 14 0.31
12 16 0.36
13 9 0.20
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTTCTCTT
Found at i:14627177 original size:156 final size:156
Alignment explanation
Indices: 14626893--14627512 Score: 1071
Period size: 156 Copynumber: 3.9 Consensus size: 156
14626883 TTAAAATTTT
* *
14626893 ACCAAGTAATTAGTTATTGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
*
14626958 AAATTCCCTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
14627023 GATTATTTAAAGAAAAATCAAGATCA
131 GATTATTTAAAGAAAAATCAAGATCA
*
14627049 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
14627114 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
14627179 GATTATTTAAAGAAAAATCAAGATCA
131 GATTATTTAAAGAAAAATCAAGATCA
*
14627205 ACCAATTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
14627270 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
* *
14627335 GATTAATTAAAGAAAAAAAAATCAAAATCA
131 GATTATTTAAAG----AAAAATCAAGATCA
* * *
14627365 GCCAAGTAATTAATTATCGGAAATTATTCTCAATTAACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
14627430 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTC
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTC
14627495 GGATTGA-TTAAAGAAAAA
130 GGATT-ATTTAAAGAAAAA
14627513 AGAAAAAAAA
Statistics
Matches: 446, Mismatches: 12, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
156 293 0.66
157 5 0.01
160 113 0.25
161 34 0.08
162 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (156 bp):
ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
GATTATTTAAAGAAAAATCAAGATCA
Found at i:14627565 original size:1 final size:1
Alignment explanation
Indices: 14627561--14627603 Score: 86
Period size: 1 Copynumber: 43.0 Consensus size: 1
14627551 AAAAAAATTC
14627561 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14627604 CCTGGAGCGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14628963 original size:26 final size:26
Alignment explanation
Indices: 14628927--14628979 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14628917 GTTGGCTTAG
14628927 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14628953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14628979 G
1 G
14628980 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14629713 original size:21 final size:21
Alignment explanation
Indices: 14629687--14629730 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
14629677 AGATCGGACC
14629687 GGATCGAGGGTTGTGGCAGTA
1 GGATCGAGGGTTGTGGCAGTA
14629708 GGATCGAGGGTTGTGGCAGTA
1 GGATCGAGGGTTGTGGCAGTA
14629729 GG
1 GG
14629731 GATCTGGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.09, G:0.50, T:0.23
Consensus pattern (21 bp):
GGATCGAGGGTTGTGGCAGTA
Found at i:14629839 original size:26 final size:26
Alignment explanation
Indices: 14629809--14629864 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
14629799 TGGGTTGGCT
*
14629809 TAAGCATACAGAGTTC-ATTCCATGTC
1 TAAGCATACAGAGTTCAATACCA-GTC
*
14629835 TAAGCATACGGAGTTCAATACCAGTC
1 TAAGCATACAGAGTTCAATACCAGTC
14629861 TAAG
1 TAAG
14629865 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCAATACCAGTC
Found at i:14630038 original size:26 final size:26
Alignment explanation
Indices: 14630008--14630060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14629998 GTTGACTTAG
*
14630008 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
14630034 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
14630060 G
1 G
14630061 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:14630388 original size:182 final size:183
Alignment explanation
Indices: 14630165--14630503 Score: 418
Period size: 183 Copynumber: 1.9 Consensus size: 183
14630155 AATAAGCACC
** * * * *
14630165 CGCACGCTTGTTTCTTGGGTTGGATTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAG-CGG
1 CGCACGCTCATTTCGTGGGTTGGATTAGCCATACAGAGTTCATTACATGTCTAAGCCCCAGCCAG
* ** ** * *
14630229 A-TCGAGGGTTATGGCAGCAAGACCGGCAG-CGGATCGGTAGCACGTAGAGGGGGATC-AGGCTG
66 ACT-GAGGGTTATGGCAGCAAGACCAGCAGACGGATCGACAGCACACAGA-AGGGATCGA-GCTA
14630291 ATCCCC-GACTTGTGCGTTATACCTCTCCGATCAGCCTCTTTGGCCGACAGAGCGCT
128 ATCCCCAG-CTTGTGCGTTATACCTCTCCGATCAGCCTCTTTGGCCGACAGAGCGCT
* * * *
14630347 CGCACGCTCATTTCGTGGGTTGGCTTAGCCATACAGAGTTCATTCCATGTTTAAGCCTCAGCCAG
1 CGCACGCTCATTTCGTGGGTTGGATTAGCCATACAGAGTTCATTACATGTCTAAGCCCCAGCCAG
* * *
14630412 ACTGAGGGTTGTGGCAGCAGGACCAGCAGAGGGATCGACAGCACACAGAAGGGATCGAGCTAATC
66 ACTGAGGGTTATGGCAGCAAGACCAGCAGACGGATCGACAGCACACAGAAGGGATCGAGCTAATC
*
14630477 CCCAGCTTGTGCGTTATGCCTCTCCGA
131 CCCAGCTTGTGCGTTATACCTCTCCGA
14630504 CTGGTTGAGC
Statistics
Matches: 131, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
182 52 0.40
183 62 0.47
184 17 0.13
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (183 bp):
CGCACGCTCATTTCGTGGGTTGGATTAGCCATACAGAGTTCATTACATGTCTAAGCCCCAGCCAG
ACTGAGGGTTATGGCAGCAAGACCAGCAGACGGATCGACAGCACACAGAAGGGATCGAGCTAATC
CCCAGCTTGTGCGTTATACCTCTCCGATCAGCCTCTTTGGCCGACAGAGCGCT
Found at i:14630933 original size:159 final size:158
Alignment explanation
Indices: 14630709--14631072 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 158
14630699 CCCATATGCC
* * * **
14630709 CGTTTAGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCGGAACTGAGG
1 CGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGACTCAGCCAAACTGAGG
* * * * * *
14630773 GTTGTGGTAGCGGGACCGATAGCACATAGAGGGGGACCAAGCCTATCCCC-GACTTGCGCATTAT
65 GTTGTGGTAGCAGGACCAACAGCACACAG-GGGGGACCAAGCCGATCCCCAG-CTTGCACATTAT
* * *
14630837 GCCTCTTCGGTCGGCTCAACGCCCGAACGCT
128 GCCTCTCCAGTCGGCTCAACACCCGAACGCT
**
14630868 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGA-TTGGACCAAACTGAG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACTCAG-CCAAACTGAG
* ** * ** * *
14630931 GGTTGTGGTAGCAGGATCAACAGCATGCAGGGGGGATCGGGCCGGTCCCCAGCTTGCACATTTTG
64 GGTTGTGGTAGCAGGACCAACAGCACACAGGGGGGACCAAGCCGATCCCCAGCTTGCACATTATG
* * * * *
14630996 CCTCTCCAGTTGGTTGAGCACCCGCACGCT
129 CCTCTCCAGTCGGCTCAACACCCGAACGCT
* *
14631026 CGTTTCATGGGTTGTCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
14631073 CATATAGAGT
Statistics
Matches: 169, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 94 0.56
159 74 0.44
160 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (158 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACTCAGCCAAACTGAGGG
TTGTGGTAGCAGGACCAACAGCACACAGGGGGGACCAAGCCGATCCCCAGCTTGCACATTATGCC
TCTCCAGTCGGCTCAACACCCGAACGCT
Found at i:14631068 original size:27 final size:26
Alignment explanation
Indices: 14631046--14631098 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14631036 GTTGTCTTAG
*
14631046 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
14631072 GCATATAGAGTTCATTCGCA-GTCTAA
1 GCATACAGAGTTCATTC-CATGTCTAA
14631098 G
1 G
14631099 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:14631270 original size:26 final size:26
Alignment explanation
Indices: 14631241--14631293 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14631231 GTTGACTTAG
*
14631241 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
14631267 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14631293 G
1 G
14631294 ATTGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14632792 original size:158 final size:158
Alignment explanation
Indices: 14632331--14632823 Score: 444
Period size: 158 Copynumber: 3.1 Consensus size: 158
14632321 CCCAGTCCCA
* * * * * *
14632331 GCATACGGAGTTCATTCACAGTCTAAGATCAAACCAATCCAAGGGTTACGACAACAGGATC-AGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGA-T
* ** * * * *
14632395 AGCACGCAGGGGGGACCGGGTTGATCCCCAACTTA-CGCATTCTACCTCTCCGACTGGTTGAGTG
65 AGCACGCAAGGGGGACCGGGCCGATCCCCGAC-TAGCGCATTCTGCCTCTCCGACCGGTTGAGCG
* *
14632459 CCCGCACGC-CTGTTTCATGGGTTGGCTTAG
129 ACCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * ** * ** * * * *
14632489 GCATAGGGGGTTCCTT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACCGAGGGTTGCGACAGCAGGATC-G
* * * * * * * * * * * *
14632551 GTAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGTGCGTTATGCCTCCCCGGCCGACTT-A
63 ATAGCACGCA-AGGGGGACCGGGCCGATCCCCGACTAGCGCATTCTGCCTCTCCGACCG-GTTGA
*
14632615 GC-ACCTGCACGCTCGTTTCGTGGGTTGACTTAG
126 GCGACC-GCACGCTCGTTTCGTGGGTTGGCTTAG
*
14632648 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGATA
* *
14632713 GCACGCAAGGGGGACCGGGCCAATCCCCGACTAGCGCATTCTGCCTCTCCGACCGGTTGAGCGTC
66 GCACGCAAGGGGGACCGGGCCGATCCCCGACTAGCGCATTCTGCCTCTCCGACCGGTTGAGCGAC
*
14632778 CACACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
14632806 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
14632824 ATGCCTAAGT
Statistics
Matches: 251, Mismatches: 70, Indels: 28
0.72 0.20 0.08
Matches are distributed among these distances:
157 5 0.02
158 132 0.53
159 107 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGATA
GCACGCAAGGGGGACCGGGCCGATCCCCGACTAGCGCATTCTGCCTCTCCGACCGGTTGAGCGAC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14633674 original size:158 final size:158
Alignment explanation
Indices: 14633494--14633853 Score: 427
Period size: 158 Copynumber: 2.3 Consensus size: 158
14633484 GAACGTTCAT
* *
14633494 TTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAA-TCGAGGGTT
1 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGAACT-GAGGGTT
* * * * * * *
14633558 GCGACT-GTAGGATTGACAACATGCAGGGGCCACCGGACCGGTCCCCATCTTGTGCATTCTGCCT
65 GCG-CTAGCAGGATCGACAACACGCAGGGGCCACCGGACCGATCCCCAGCTTGCGCATTCTACCT
*
14633622 CTCCAGCCAGTTGAGCACCCGCACGCTCGT
129 CTCCAGCCAGTTGAGCACCCGCACGCTCGG
* * * *
14633652 TTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACTGAGGGTTG
1 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGAACTGAGGGTTG
* * * ** * **
14633717 CGGTAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCT
66 CGCTAGCAGGATCGACAACACGCAGGGGCCACCGGACCGATCCCCAGCTTGCGCATTCTACCTCT
* ** * * *
14633782 TCATTCGGTTGAGCGCCCGCACGCTTGG
131 CCAGCCAGTTGAGCACCCGCACGCTCGG
*
14633810 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
1 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
14633854 CATACGGAGT
Statistics
Matches: 169, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
157 1 0.01
158 167 0.99
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGAACTGAGGGTTG
CGCTAGCAGGATCGACAACACGCAGGGGCCACCGGACCGATCCCCAGCTTGCGCATTCTACCTCT
CCAGCCAGTTGAGCACCCGCACGCTCGG
Found at i:14633858 original size:26 final size:26
Alignment explanation
Indices: 14633827--14633878 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14633817 GTTGACTTAG
14633827 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
14633853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14633879 TATCGAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14634038 original size:184 final size:184
Alignment explanation
Indices: 14633669--14634025 Score: 441
Period size: 184 Copynumber: 1.9 Consensus size: 184
14633659 GTTCACTTAG
* * **
14633669 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAAACTGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * *
14633734 GCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTTCATTCGGTTGAGCGCC
66 GCACGTAGAGGGGATCGGGCCGATCCCCAGATTACACATTCTACCTCTCCATTCGGCTGAGCACC
***
14633799 CGCACGCTTGGTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
131 CGCACGCCCAGTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * *
14633853 GCATACGGAGTTCATTCCCAGTCTAATATCGAATCAAA-TCGAGGGTTG-GCACAGCAGGATCGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAAACT-GAGGGTTGCG-ACAGCAGGATCGA
* **
14633916 CAGCACGTAGAGGGGATTGGGCCGATCCCCTTATTACACATTCTACCTCTCCGA-TCGGCTGAGC
64 CAGCACGTAGAGGGGATCGGGCCGATCCCCAGATTACACATTCTACCTCTCC-ATTCGGCTGAGC
* * * *
14633980 ACCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
128 ACCCGCACGCCCAGTTCATGGGTTGACTTAGGCATACGGAGTTCAT
14634026 TCCATGTCTA
Statistics
Matches: 145, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
183 2 0.01
184 142 0.98
185 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGAATCAAACTGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGAGGGGATCGGGCCGATCCCCAGATTACACATTCTACCTCTCCATTCGGCTGAGCACC
CGCACGCCCAGTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
Found at i:14634540 original size:26 final size:26
Alignment explanation
Indices: 14634510--14634562 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14634500 GTTGACTTAG
14634510 GCATACAGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
*
14634536 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
14634562 G
1 G
14634563 TTCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:14635929 original size:26 final size:26
Alignment explanation
Indices: 14635899--14635948 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14635889 TGGCTTAGGC
14635899 ATACAGAGTTCATT-CCATGTCTAAAT
1 ATACAGAGTTCATTCCCA-GTCTAAAT
14635925 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
14635949 GATCAGACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAAT
Done.