Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 112 of 402
Found at i:14636497 original size:26 final size:26
Alignment explanation
Indices: 14636461--14636513 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14636451 GTTGGCTTAG
14636461 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14636487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14636513 G
1 G
14636514 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14637247 original size:26 final size:26
Alignment explanation
Indices: 14637211--14637263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14637201 GTTGACTTAG
*
14637211 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14637237 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14637263 G
1 G
14637264 ATCGAACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14637763 original size:26 final size:26
Alignment explanation
Indices: 14637712--14637764 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14637702 GTTGGCTTAG
**
14637712 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATACCTAA
*
14637738 GCATACGGAGTTCATTCCCA-ACCTAA
1 GCATACAGAGTTCATT-CCATACCTAA
14637764 G
1 G
14637765 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATACCTAA
Found at i:14647334 original size:26 final size:26
Alignment explanation
Indices: 14647298--14647350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14647288 GTTGACTTAG
14647298 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
14647324 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14647350 G
1 G
14647351 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14647819 original size:26 final size:26
Alignment explanation
Indices: 14647783--14647835 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14647773 GTGGGCTTAG
14647783 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
14647809 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14647835 G
1 G
14647836 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14648898 original size:25 final size:26
Alignment explanation
Indices: 14648864--14648912 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
14648854 GTTGACTTAG
14648864 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14648889 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
14648913 CTGATCAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14649280 original size:159 final size:158
Alignment explanation
Indices: 14648984--14649392 Score: 349
Period size: 159 Copynumber: 2.6 Consensus size: 158
14648974 CCATCCCTGG
* * * * * *
14648984 CTTGCGCTTTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCCCGTTTCATGGGTTGACTTAGGC
* * ** ** *
14649049 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTATGGCAGTGGGACTGGCAGC
66 ATAGGGAGTTCATTCCATGTCTAAGCACTAGCCGGACCGAGGGTTAAGGCAGCAGGACTAACAAC
**
14649114 ATGCAGAGAGGGACCAAGTTGATCCCCGA
131 ACACAGAG-GGGACCAAGTTGATCCCCGA
* * * *
14649143 CTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGTACGCTCGTTTCATGGGTTGACTTATGC
1 CTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCCCGTTTCATGGGTTGACTTAGGC
* * * *
14649208 ATATGGAGTTCATTCC-TAGTCTAAG-ATTGGACCGGACTGAGGGTTAAGGCAGCAGGA-TCAAC
66 ATAGGGAGTTCATTCCAT-GTCTAAGCACTAG-CCGGACCGAGGGTTAAGGCAGCAGGACT-AAC
**** * * *
14649270 AACACACAGAGGGGATTGGGTCGGTCCTC-A
128 AACACACAGAGGGGACCAAGTTGATCCCCGA
* * * * * * * * ** * * *
14649300 GCTTGTGCATTCTACCTCTCCGATCGGTTGAGCACCCGAACGCTAGTTTCGTGGCTTGGCTTAGG
1 -CTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCCCGTTTCATGGGTTGACTTAGG
*
14649365 CATACGGAGTTCATTCCATGTCTAAGCA
65 CATAGGGAGTTCATTCCATGTCTAAGCA
14649393 TACGAAGTTC
Statistics
Matches: 199, Mismatches: 45, Indels: 12
0.78 0.18 0.05
Matches are distributed among these distances:
157 1 0.01
158 88 0.44
159 110 0.55
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
CTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCCCGTTTCATGGGTTGACTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCACTAGCCGGACCGAGGGTTAAGGCAGCAGGACTAACAAC
ACACAGAGGGGACCAAGTTGATCCCCGA
Found at i:14649393 original size:26 final size:26
Alignment explanation
Indices: 14649364--14649416 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14649354 CTTGGCTTAG
*
14649364 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14649390 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14649416 G
1 G
14649417 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14649770 original size:25 final size:26
Alignment explanation
Indices: 14649741--14649792 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14649731 GTTGACTTAG
14649741 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14649766 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14649792 G
1 G
14649793 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14660794 original size:26 final size:26
Alignment explanation
Indices: 14660758--14660810 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14660748 GTTGACTTAG
*
14660758 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14660784 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14660810 G
1 G
14660811 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14661283 original size:26 final size:26
Alignment explanation
Indices: 14661247--14661299 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14661237 GTGGGCTTAG
14661247 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14661273 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14661299 G
1 G
14661300 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14662368 original size:26 final size:26
Alignment explanation
Indices: 14662332--14662381 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14662322 GTTGACATAG
14662332 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14662358 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
14662382 CTGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14662666 original size:159 final size:158
Alignment explanation
Indices: 14662445--14662860 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 158
14662435 GACTAGGCCC
* * * * * * * * *
14662445 ATCCCCGGCTTGCGCTTTCTGCCTCTCCGGCCGACTGAGCACCCGCATGCCCGTTTCGTGGGTTG
1 ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTG
* * **
14662510 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTATGGCAGTGGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCGGACCGAGGGTTACGGCAGCAGG
* **
14662574 ACTAG-CAGCATGCAGAGA-GGGACTGAGTTG
130 A-TAGACAGCA--CAGAGAGGGGACCGAGCCG
*** *
14662604 ATCCCC-GACTTGCGCATTATGCCTCTCCGACCGGCTCAACGGTCGTACGCTCGTTTCGTGGGTT
1 ATCCCCAG-CTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCTCGTTTCGTGGGTT
* * * * ** * *
14662668 GACTTATGCATATGGAGTTCATT-CGTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
65 GGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCGGACCGAGGGTTACGGCAGCAG
* * *
14662732 GATCGACAGCACATAGAGGGGACCGGGCCG
129 GATAGACAGCACAGAGAGGGGACCGAGCCG
* * * * * * *
14662762 TTCCTCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGCTTG
1 ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTG
14662827 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14662861 ATACGAAGTT
Statistics
Matches: 205, Mismatches: 45, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 92 0.45
159 108 0.53
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (158 bp):
ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGGTTACGGCAGCAGGA
TAGACAGCACAGAGAGGGGACCGAGCCG
Found at i:14662837 original size:158 final size:156
Alignment explanation
Indices: 14662358--14662859 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 156
14662348 CCCAGTCTAA
** ** * * * *
14662358 GCATACGGAGTTCATTCCTAGTCTCTGATCAGACCAAATCGAAGGTTGCGGCAATAGGATCGATA
1 GCATACGGAGTTCATT-CTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * *
14662423 GCACACAGGGGGGACTAGGCCCATCCCCGGCTTGCGCTTTCTGCCTCTCCGGCCGACTGAGCACC
65 GCACACAGAGGGGACTGGGCCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
* *
14662488 CGCATGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** * *
14662516 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTATGGCAGTGGGA-CTAG
1 GCATACGGAGTTCATTCTA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGTAGGATCGA-
** * ** * * * *
14662579 CAGCATGCAGAGAGGGACTGAGTTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAAC
63 CAGCACACAGAG-GGGACTGGGCCGATCCCAG-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
*** * * *
14662644 GGTCGTACGCTCGTTTCGTGGGTTGACTTAT
126 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14662675 GCATATGGAGTTCATTCGTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * *
14662740 GCACATAGAGGGGACCGGGCCGTTCCTCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
65 GCACACAGAGGGGACTGGGCCGATCC-CAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
*
14662805 CGCACGCTCGTTTCGTGGCTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
14662833 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCTA-GTCTAAG
14662860 CATACGAAGT
Statistics
Matches: 263, Mismatches: 71, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 5 0.02
158 138 0.52
159 117 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
CACACAGAGGGGACTGGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14662870 original size:26 final size:26
Alignment explanation
Indices: 14662833--14662885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14662823 CTTGGCTTAG
*
14662833 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14662859 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14662885 G
1 G
14662886 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14663242 original size:26 final size:26
Alignment explanation
Indices: 14663212--14663264 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14663202 GTTGACTTAG
14663212 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14663238 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14663264 G
1 G
14663265 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14663716 original size:158 final size:157
Alignment explanation
Indices: 14663238--14664056 Score: 785
Period size: 158 Copynumber: 5.2 Consensus size: 157
14663228 CCCAGTCTAA
* * *
14663238 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGTGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
14663303 GTACGGAAGGGGGACCGGGCC-ATTCCCTGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCAC
65 GCACGCAGGGGGGATCGGGCCGA-TCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGC
* *
14663367 CAGCATGC-CTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * * * **
14663396 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGGCCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
14663460 AGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGTATTATGCCTCTCC-AACCAGTTCAAC
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGA-CTGAGC
* *
14663524 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
14663555 GCATACGGAGTTCATTCCTAGTCAAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* *
14663620 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCC
*
14663685 CGCACGCTCGTTTCGTGGGTTGGCTTTG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
14663713 GCATA-GTGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGTAGGA-CTG
1 GCATACG-GAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-G
* ** * * *
14663775 GCAGCACGTACA-GGGGGATCGGGCTAATCCCCGGCTTACGAATTATGCC-CTTTCGATC-AGCT
62 ACAGCACG--CAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTC-TCCGATCGA-CT
* * * * * *
14663837 CAACGCCCACACGCTTGTTTCGTGGGTTGACTTAT
123 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14663872 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
14663937 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGATTGAGTGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCC
14664002 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
14664030 GCTTGCGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
14664057 CATACGGTGT
Statistics
Matches: 524, Mismatches: 112, Indels: 50
0.76 0.16 0.07
Matches are distributed among these distances:
157 9 0.02
158 261 0.50
159 244 0.47
160 10 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14663822 original size:317 final size:317
Alignment explanation
Indices: 14663238--14664057 Score: 1112
Period size: 317 Copynumber: 2.6 Consensus size: 317
14663228 CCCAGTCTAA
* *
14663238 GCATACGGAGTTCATT-CTCAGTCTAAGATCAGACCGGACCAAGTGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * **
14663302 AGTACGGAAGGGGGACCGGGCC-ATTCCCTGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCA
65 AGCACGCAGGGGGGACCGGGCCGA-TCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGTG
* *
14663366 CCAGCATGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
129 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * *
14663430 CGGACCGAGGGTTGTGGCAGCGGGGCCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTT
193 CGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCACAGGGGGATCGGGTCAATCCCCGGCTT
* * * *
14663495 GCGTATTATG-CCTCTCCAACCAGTTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTAG
258 ACGAATTATGCCCT-TCCAACCAGCTCAACACCCACACGCTCGTTTCGTGGGTTGACTTAG
* * *
14663555 GCATACGGAGTTCATTCCTAGTCAAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
* **
14663620 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGTGCC
* *
14663685 CGCACGCTCGTTTCGTGGGTTGGCTTTGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * * * *
14663750 ACTGAGGGTTGTGGCAGTAGGACTGGCAGCACGTACAGGGGGATCGGG-CTAATCCCCGGCTTAC
196 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCACAGGGGGATCGGGTC-AATCCCCGGCTTAC
* * * * * *
14663814 GAATTATGCCCTTTCGATCAGCTCAACGCCCACACGCTTGTTTCGTGGGTTGACTTAT
260 GAATTATGCCCTTCCAACCAGCTCAACACCCACACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
14663872 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
* * * *
14663937 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGATTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGTGCC
*
14664002 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC-TTGCGGAGTTCATTCCATGTCTAAGC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGC
14664058 ATACGGTGTT
Statistics
Matches: 441, Mismatches: 56, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
316 3 0.01
317 431 0.98
318 7 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCACAGGGGGATCGGGTCAATCCCCGGCTTACG
AATTATGCCCTTCCAACCAGCTCAACACCCACACGCTCGTTTCGTGGGTTGACTTAG
Found at i:14664775 original size:26 final size:26
Alignment explanation
Indices: 14664739--14664788 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14664729 GTTGACTTAG
14664739 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14664765 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
14664789 CTGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14665270 original size:26 final size:26
Alignment explanation
Indices: 14665240--14665292 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14665230 CTTGGCTTAG
*
14665240 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14665266 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14665292 G
1 G
14665293 ATCGAATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14665617 original size:26 final size:26
Alignment explanation
Indices: 14665587--14665639 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14665577 GTTGACTTAG
*
14665587 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14665613 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14665639 G
1 G
14665640 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14666090 original size:157 final size:158
Alignment explanation
Indices: 14665613--14666426 Score: 599
Period size: 157 Copynumber: 5.2 Consensus size: 158
14665603 CCCAGTCTAA
* * * *
14665613 GCATACAGAGTTCATTCTCA-GTCTAAGATCAGACCAGG-CCAAGGGTTACGGCAGCAGGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGA-CTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
14665676 TAGCACGGAAGGGTGACCGGGCC-ATTCCCTGGCTTACGCATTCTGCCTCTCCGGTC-AGCTGAG
64 CAGCACGCAGGGGGGATCGGGCCGA-TCCCCGGCTTACGCATTCTGCCTCTCCGGCCGA-CTGAG
* * * *
14665739 CACCAGCATGCCCGTTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * * * **
14665771 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGGCCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
14665835 AGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGTATTATGCCTCTCCAGCC-AGTTCAGC
65 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGA-CTGAGC
* * *
14665899 ACCCGCACGCTCATTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
14665930 GCATACGGAGTTCATTCC-TAGTCAAAGATCAGACTGGACCAAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
** *
14665994 AGCACGCAGGGGGGATC-GGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGACTGAGTGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
* *
14666058 CCGTACGCTCGTTTCGTGGGTTGGCTTTG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** * ** * ** * **
14666087 GCATAATGAGTTCATTCCATGTCTAAGCCCCAGTC-GGATTGAGGGTTGTGGCAATAGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
14666151 AGCACGTACA-GGGGGATCGAGG-TGATCCCCGGCTT-CGAATTATGCC-CTTCGACCGGCTCCA
65 AGCACG--CAGGGGGGATCG-GGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACT-GA
* * * *
14666212 GCGCCCGTACGCTTGTTTCGTGGG-TGACTTAT
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14666244 GCATACGGAG-TCATTCCCA-G-GTAAGATCAGAATCGGACCGAGGGTTGCAGG-AACA-GATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACT-GGACCGAGGGTTGC-GGCAGCAGGATCG
** * * * *
14666304 ACAGGCACATAGGGGGGA-CGGGCCGATCCCCAGCTTGCGCATTCTGCCTCT-CGGTCGATTGAG
63 ACA-GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAG
*
14666367 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTA-G
* *
14666400 GCTTGCGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14666427 CATACGATGT
Statistics
Matches: 506, Mismatches: 121, Indels: 58
0.74 0.18 0.08
Matches are distributed among these distances:
153 2 0.00
154 39 0.08
155 35 0.07
156 37 0.07
157 144 0.28
158 109 0.22
159 137 0.27
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14667157 original size:26 final size:26
Alignment explanation
Indices: 14667121--14667170 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14667111 GTTGACTTAG
14667121 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14667147 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
14667171 CTGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14667531 original size:159 final size:159
Alignment explanation
Indices: 14667234--14667650 Score: 367
Period size: 159 Copynumber: 2.6 Consensus size: 159
14667224 GACTAGGCCC
* * * * * *
14667234 ATCCCCGGCTTGCGCTTTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
1 ATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTA
* * * ** **
14667299 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGA
66 ACTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCGAGCCGGACCGAGGGTTACGGCAGCAGGA
*
14667364 CTGGCAGCATGCAGAGAGGGATCGAGTTG
131 CTGACAGCATGCAGAGAGGGATCGAGTTG
* * *
14667393 ATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTA
1 ATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTA
* ** * *
14667458 ACTTAAGCATATGGAGTTCATTCC-TAGTCTAAGATCG-GACCGGACTGAGGGTTACGGTAGCAG
66 ACTTAAGCATAGGGAGTTCATTCCAT-GTCTAAGCCCGAG-CCGGACCGAGGGTTACGGCAGCAG
** * * **
14667521 GA-TCGACAGCACACA-AGGGGGAATCGGGCCG
129 GACT-GACAGCATGCAGAGAGGG-ATCGAGTTG
* * * * ** * * * * *
14667552 GTCCTC-AGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCACCCGCACGCTCATTTCGTGGCTT
1 ATCCCCGA-CTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTT
** * *
14667616 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 AACTTAAGCATAGGGAGTTCATTCCATGTCTAAGC
14667651 ATACGAAGTT
Statistics
Matches: 207, Mismatches: 45, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
158 9 0.04
159 197 0.95
160 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
ATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTA
ACTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCGAGCCGGACCGAGGGTTACGGCAGCAGGA
CTGACAGCATGCAGAGAGGGATCGAGTTG
Found at i:14667660 original size:26 final size:26
Alignment explanation
Indices: 14667623--14667675 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14667613 CTTGGCTTAG
*
14667623 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14667649 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14667675 G
1 G
14667676 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14668032 original size:26 final size:26
Alignment explanation
Indices: 14668002--14668054 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14667992 GTTGACTTAG
*
14668002 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14668028 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14668054 G
1 G
14668055 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14668506 original size:158 final size:154
Alignment explanation
Indices: 14668035--14668838 Score: 553
Period size: 158 Copynumber: 5.1 Consensus size: 154
14668025 TAAGCATACA
* * ** * *
14668035 GAGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGATAGCACGAA
1 GAGTTCATTC-CAGTC-AAGATCA-AACGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG-T
* * * * * * * * *
14668100 AGG-GGGACCGGGCC-ATTCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCAGCAT
62 AGGAGGGATCGGGCCGA-TCCCCGGCTTGCACATTCTGCCTCTCC-GACGACTGAGCGCCCGCAC
* *
14668163 GCCCGTTTCATGGGTTGGCTTAGGCATAG-G
125 GCTCGTTTCATGGGTTGACTTAGGCAT-GCG
** ** * * * * * *
14668193 GAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGGTTGACAGCACGCA
1 GAGTTCATTCCA-GTC-AAG-ATCAAACGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACG--
* * * * * * ** * * *
14668258 AAGG-GGGA-CAAGGTCGATCCCCGGCTTGCATATTATGCCTTTCTAACCAGCTCAGCGCTCGCA
61 TAGGAGGGATC-GGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACGA-CTGAGCGCCCGCA
*
14668321 CGCTCGTTTCGTGGGTTGACTTAGGCATGCG
124 CGCTCGTTTCATGGGTTGACTTAGGCATGCG
* *
14668352 GAGTTCATTCCTAGTCAATGATCAAATCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGTA
1 GAGTTCATTCC-AGTCAA-GATCAAA-CGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTA
* *
14668417 GGAGGGATCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACAGACTGAGCGCCCGCACGC
63 GGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGAC-GACTGAGCGCCCGCACGC
* * * * *
14668482 TCGTTTCGTGAGTTGGCTTTGGCATAG-T
127 TCGTTTCATGGGTTGACTTAGGCAT-GCG
** ** * * * * *
14668510 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGTAGGACCGGCAGCACGTA
1 GAGTTCATTCCA-GTC-AAG-ATCAAACGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGT-
* * * * * * *
14668575 CAGG-GGGATCGGGCTGATCCCCGGCTTGCGA-ATTATGCCCCTTCGATCGGCTCAGCGCCCGTA
62 -AGGAGGGATCGGGCCGATCCCCGGCTTGC-ACATTCTGCCTCTCCGA-CGACTGAGCGCCCGCA
* * *
14668638 CGCTTGTTTCATGGGTTGACTTATGCATACG
124 CGCTCGTTTCATGGGTTGACTTAGGCATGCG
* ** * * *
14668669 GAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGTTTGCGGCAGCATGATCGACAGCACGTA
1 GAGTTCATT-CCAGT-CAAGATCAAAC-GGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTA
* * * * * *
14668734 GAAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACGC
63 GGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCC-GACGACTGAGCGCCCGCACGC
*
14668799 TCGTTTCATGGGTTGGCTTAGGCATGCG
127 TCGTTTCATGGGTTGACTTAGGCATGCG
*
14668827 GAGTTTATTCCA
1 GAGTTCATTCCA
14668839 TGTCTAAGCA
Statistics
Matches: 502, Mismatches: 116, Indels: 57
0.74 0.17 0.08
Matches are distributed among these distances:
157 11 0.02
158 250 0.50
159 231 0.46
160 10 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (154 bp):
GAGTTCATTCCAGTCAAGATCAAACGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGA
GGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACGACTGAGCGCCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATGCG
Found at i:14668612 original size:317 final size:316
Alignment explanation
Indices: 14668028--14668847 Score: 924
Period size: 317 Copynumber: 2.6 Consensus size: 316
14668018 CCCAGTCTAA
* * * ** * *
14668028 GCATACAGAGTTCATTCTCAGT-CTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTGC-AAGATCAAACTAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * *
14668092 AGCACGAAAGG-GGGACCGGGCC-ATTCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGC
65 AGCACG-TAGGAGGGACCGGGCCGA-TCCC-GGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGC
* * * *
14668155 ACCAGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* ***
14668220 CAGACCGAGGGTTGTGGCAGCGGGGTTGACAGCACGCAAAGGGGGACAAGGTCGATCCCCGGCTT
192 CAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAAAGGGGGACAAGGTCGATCCCCGGCTT
* * *
14668285 GCATATTATG-CCTTTCTAACCAGCTCAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAG
257 GCATATTATGCCCCTTC-AACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
14668345 GCATGCGGAGTTCATTCCTAGT-CAATGATCAAA-TCAGACCAAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTGCAA-GATCAAACT-AGACCAAGGGTTGCGGCAGCAGGATCGA
* * * *
14668408 CAGCACGTAGGAGGGATCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTCC-GACAGACTGAGC
64 CAGCACGTAGGAGGGACCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGTC-GACTGAGC
* * * *
14668472 GCCCGCACGCTCGTTTCGTGAGTTGGCTTTGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAGC
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * * *
14668537 CGGACTGAGGGTTGTGGTAGTAGGACCGGCAGCACGTACAGGGGGATC--GGGCTGATCCCCGGC
192 CAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAAAGGGGGA-CAAGGTC-GATCCCCGGC
* * * * * *
14668600 TTGCGA-ATTATGCCCCTTCGATCGGCTCAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAT
255 TTGC-ATATTATGCCCCTTCAACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* ** * * * *
14668662 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGTTTGCGGCAGCATGATCGACA
1 GCATACGGAGTTCATTCCCAGTGCAAGATCAAACTAGACCAAGGGTTGCGGCAGCAGGATCGACA
* * *
14668727 GCACGTAGAAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCC
66 GCACGTAGGAGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
*
14668792 CGCACGCTCGTTTCATGGGTTGGCTTAGGCAT-GCGGAGTTTATTCCATGTCTAAGC
130 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGC
14668848 ATACGATGTT
Statistics
Matches: 420, Mismatches: 68, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
316 11 0.03
317 393 0.94
318 16 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTGCAAGATCAAACTAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGAGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAAAGGGGGACAAGGTCGATCCCCGGCTTGCAT
ATTATGCCCCTTCAACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:14670135 original size:717 final size:720
Alignment explanation
Indices: 14668747--14670273 Score: 2490
Period size: 717 Copynumber: 2.1 Consensus size: 720
14668737 GGGACCGGGC
* * * * * *
14668747 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGTGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCG-AATCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * *
14668812 TGGCTTAGGCATGCGGAGTTTATTCCATGTCTAAGCATACGATGTTCATTCCTAGCTAATATTTT
65 TGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGATGTTCATTCCAAGCTAAGAGTTT
* * ** *
14668877 GAGCCACGGTGCACATGTTGGGCTCGGGCATATGCTGGTGCCGCATTTATTTTTCCTGGGGCACC
130 GAGCCACGGTGCACATGCTGGGCTCGGGCATATGCTGGTGCCACATTTATTTTTCCCCGAGCACC
* * ** *
14668942 ATCGTCGGAGCATCGCCGAAGAGCCTAACCAACGGCATTGGGGGTTCCGGTGATTGGGGGGGCCG
195 ATCATCGGAGCATCACCGAAGAGCCTAACCAACGGCATTGGGGGTTCCGGACAATGGGGGGG-CG
*
14669007 GGGGGTATGCGCACATGATGTGCGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
259 AGGGGTATGCGCACATGATGTGCGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
14669072 TCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
324 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
14669137 TAGCCATTAAAGTGTCTGAAATAGGGGCACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCA
389 TAGCCATTAAAGTGTCTGAAATAGGGGCACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCA
14669202 AGTTTTTAGCTGAAAGTTTTTGTGCATGCTAACAAAAATACAAGGATCACCTCTACCATATTTGG
454 AGTTTTTAGCTGAAAGTTTTTGTGCATGCTAACAAAAATACAAGGATCACCTCTACCATATTTGG
14669267 GGACAAAATGCTTTCTAAAAAAATTTTAAAAAATCTTGAACCGCAAAAGGTTTCAATAATCGTGA
519 GGACAAAATGCTTTCTAAAAAAATTTTAAAAAATCTTGAACCGCAAAAGGTTTCAATAATCGTGA
14669332 AAAATATAAAACAGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
584 AAAATATAAAACAGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
*
14669397 TTTACAAGCCATAAAAATGGCATTGGCGTGGCAGAAATATGAAGATGTGCTTGAACCCACCTACC
649 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACC
14669462 ACCCGTT
714 ACCCGTT
* * * *
14669469 CGATTCTCGGCTTGCGTAATCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGC
1 CGATCCCCGGCTTGCG-AATCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
14669534 TGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACAGA-GTTCATTCCAATCTAAGAGTT
65 TGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATAC-GATGTTCATTCCAAGCTAAGAGTT
* * * *
14669598 TGAGCCACGGTGCACATGCTGGGCTTGTGCATGTGCTGGTGCTACA-TT-TTTTTCGCCCGAGCA
129 TGAGCCACGGTGCACATGCTGGGCTCGGGCATATGCTGGTGCCACATTTATTTTTC-CCCGAGCA
* * ** **
14669661 CCATCATCGGAGCATCATCGGAGAGCCTAACCGGCGGCATTGGGGGTT-TTGACAAT-GGGGGG-
193 CCATCATCGGAGCATCACCGAAGAGCCTAACCAACGGCATTGGGGGTTCCGGACAATGGGGGGGC
* * * * * *
14669723 TAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCTTATCC
258 GAGGGGTATGCGCACATGATGTGCGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
14669788 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
323 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
14669853 GTAGCCATTAAAGTGTCTGAAATAGGGGCACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTC
388 GTAGCCATTAAAGTGTCTGAAATAGGGGCACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTC
14669918 AAGTTTTTAGCTGAAAGTTTTTGTGCATGCTAACAAAAATACAAGGATCACCTCTACCATATTTG
453 AAGTTTTTAGCTGAAAGTTTTTGTGCATGCTAACAAAAATACAAGGATCACCTCTACCATATTTG
14669983 GGGACAAAATGCTTTCTAAAAAAATTTTAAAAAATCTTGAACCGCAAAAGGTTTCAATAATCGTG
518 GGGACAAAATGCTTTCTAAAAAAATTTTAAAAAATCTTGAACCGCAAAAGGTTTCAATAATCGTG
14670048 AAAAATATAAAACAGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGA
583 AAAAATATAAAACAGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGA
14670113 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTAC
648 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTAC
14670178 CACCCGTT
713 CACCCGTT
* * *
14670186 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGT
1 CGATCCCCGGCTTGCGAAT-CTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
14670251 TGACTTAGGCATACGAAGTTCAT
65 TGGCTTAGGCATACGGAGTTCAT
14670274 CCCCAGTCTA
Statistics
Matches: 745, Mismatches: 57, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
716 2 0.00
717 529 0.71
719 6 0.01
720 9 0.01
721 49 0.07
722 148 0.20
723 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (720 bp):
CGATCCCCGGCTTGCGAATCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGATGTTCATTCCAAGCTAAGAGTTTG
AGCCACGGTGCACATGCTGGGCTCGGGCATATGCTGGTGCCACATTTATTTTTCCCCGAGCACCA
TCATCGGAGCATCACCGAAGAGCCTAACCAACGGCATTGGGGGTTCCGGACAATGGGGGGGCGAG
GGGTATGCGCACATGATGTGCGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATAGGGGCACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCAAG
TTTTTAGCTGAAAGTTTTTGTGCATGCTAACAAAAATACAAGGATCACCTCTACCATATTTGGGG
ACAAAATGCTTTCTAAAAAAATTTTAAAAAATCTTGAACCGCAAAAGGTTTCAATAATCGTGAAA
AATATAAAACAGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCAC
CCGTT
Found at i:14670757 original size:156 final size:155
Alignment explanation
Indices: 14670291--14670784 Score: 408
Period size: 159 Copynumber: 3.1 Consensus size: 155
14670281 CTAAGAATAT
* * * * *
14670291 GGAGTTCATTCC-TAGTCTAAGATCAGATCGGATCGAGGTTTGTAGCAGCAGGATCGATAGCACG
1 GGAGTTCATTCCAT-GTCTAAGATCGGATCAGATCGAGGGTTGCA-CAG-AGGATCGACAGCACG
* * * * ** * * * *
14670355 TAGGGGGGACCGGGCCGAT-CCCTAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACTCATA
63 TAGGGGGGA-CAGGCCGATCCCCGA-CTTGCGCATTCTACCTCTTCGGCAGATTGAACGCCCGTA
* * *
14670419 CGCCCGTTTTGTGGGTTGGCTTAGGCATAG
126 CGCTCGTTTTATGGGTTGGCTTAGGCATAC
** * ** * *
14670449 GGAGTTCATTCCATGTCTAAGCCCTGG-TCAGACCGAGGGTTGGGGCAGCGAGA-CTGGCAGCAC
1 GGAGTTCATTCCATGTCTAAGATC-GGATCAGATCGAGGGTT-GCACAGAG-GATC-GACAGCAC
* * * * * * * * *
14670512 ATAGCGGGGGACTAGGTCGATCCCCGGCTTGTGCATTATGCCTC-TCTGGTCGGCTCG-ACGCCC
62 GTAG-GGGGGAC-AGGCCGATCCCCGACTTGCGCATTCTACCTCTTC-GG-CAGATTGAACGCCC
* * *
14670575 GCACGCTCGTTTCATGGGTTGACTTAGGCATAC
123 GTACGCTCGTTTTATGGGTTGGCTTAGGCATAC
14670608 GGAGTTCATTCCCA-GTCTAAGATCGGATCAGATCGAGGGTTGCACAGTAGGATCGACAGCACGT
1 GGAGTTCATT-CCATGTCTAAGATCGGATCAGATCGAGGGTTGCACAG-AGGATCGACAGCACGT
* **
14670672 AGGGGGGTCAGGCCGATCCCCGACTCACGCATTCTACCTCTTCGGCAGATTGAACGCCCGTACGC
64 AGGGGGGACAGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGCAGATTGAACGCCCGTACGC
* *
14670737 TCGTTTTATGAGTTGGCTTAGGCAGAC
129 TCGTTTTATGGGTTGGCTTAGGCATAC
* *
14670764 AGAGTTTATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
14670785 CATATGGAGT
Statistics
Matches: 259, Mismatches: 60, Indels: 36
0.73 0.17 0.10
Matches are distributed among these distances:
155 7 0.03
156 75 0.29
157 10 0.04
158 65 0.25
159 93 0.36
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GGAGTTCATTCCATGTCTAAGATCGGATCAGATCGAGGGTTGCACAGAGGATCGACAGCACGTAG
GGGGGACAGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGGCAGATTGAACGCCCGTACGCTC
GTTTTATGGGTTGGCTTAGGCATAC
Found at i:14671250 original size:512 final size:509
Alignment explanation
Indices: 14670351--14671324 Score: 1176
Period size: 512 Copynumber: 1.9 Consensus size: 509
14670341 GGATCGATAG
* **
14670351 CACGTAGGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACTC
1 CACGTAAGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGCACTC
** *
14670416 ATACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTGGTCAGA
66 A-ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGGTCAGA
* * *
14670481 CCGAGGGTTGGGGCAGCGAGACTGGCAGCACATAGCGGGGGACTAGGTCGATCCCCGGCTTGTGC
130 CCGAGGGTTGGGGCAACGAGACTGGCA-CACATAGCGGGGGACTAGGCCGATCCCCGGCTTGCGC
* * * * * * *
14670546 ATTATGCCTCTCTGGTCGGCTCGACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
194 ATTATGCCTCTCTAGCCAGCTAGACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAA
* * * * * *
14670611 GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCACAGTAGGATCGACAGCACGTAGGG
259 GTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTACACAGCAGGATCAACAGCACGTAGGG
*
14670676 GGGTCAGGCCGATCCCCGACTCACGCATTCTACCTCTTCGGCAGATTGAACGCCCGTACGCTCGT
324 GGGTCAGGCCGATCCCCGACTCACGCATTCTACCTCTTCGGCAGACTGAACGCCCGTACGCTCGT
* * * * * *
14670741 TTTATGAGTTGGCTTAGGCAGACAGA-GTTTATTCCATGTCTAAGCATATGGAGTTGATTCCCAA
389 TTCATGAGTTGGCTTAGGCAGAC-GATGTTCATTCCATGTCTAAGAACACGGAGTTCATTCCCAA
14670805 TCTAAGATCAGATCGGATTGAGGGTTGCGACAGCAGGACCAGTTGGAGGATTGACAT
453 TCTAAGATCAGATCGGATTGAGGGTTGCGACAGCAGGACCAGTTGGAGGATTGACAT
* * ** *
14670862 CACGTAAGGGGGACCGGGTCGAT-CCTCGGCTTGCGCATTCTACCTCTCCAATTGGCTGAGCGCC
1 CACGTAAGGGGGACCGGGCCGATCCCT-AGCTTGCGCATTCTACCTCTCCAACCGGCTGAGC-AC
* *
14670926 TGC-ACGCTCGTTTCATGGGTTGGCTTAGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTT
64 T-CAACGCCCGTTTCATGGGTTGGCTTA-GGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGGT
* * * * * * * *
14670990 GA-ACCGAGGGTTGTGGTAATGGGACTGGCA-ACAT-GCAGAGGGGTC-AGGCCGATCCCTGGTT
126 CAGACCGAGGGTTGGGGCAACGAGACTGGCACACATAGC-G-GGGGACTAGGCCGATCCCCGGCT
* *
14671051 TGCGTATTATGCCTCT-TCAGCCAGCTTAG-CACCCGCACGCTCATTTCATGGGTTGACTTATGC
189 TGCGCATTATGCCTCTCT-AGCCAGC-TAGACACCCGCACGCTCATTTCATGGGTTGACTTAGGC
* **
14671114 ATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGTTAGCAGGATCAACAGC
252 ATACGAAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTAC-ACAGCAGGATCAACAGC
** * *** * * * **
14671179 ACGTAGGGGGGATTGGGCCGATCCCCGGCTTGTGTATTCTGCCTCTTCGATC-GACTGAGTGCCC
316 ACGTAGGGGGG-TCAGGCCGATCCCCGACTCACGCATTCTACCTCTTCG-GCAGACTGAACGCCC
* *
14671243 GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGATGTTCATTCCATGTCTAAGAACACGGAGTT
379 GTACGCTCGTTTCATGAGTTGGCTTAGGCAGACGATGTTCATTCCATGTCTAAGAACACGGAGTT
*
14671308 CATTCCCAGTCTAAGAT
444 CATTCCCAATCTAAGAT
14671325 TTTGAGCCAC
Statistics
Matches: 387, Mismatches: 63, Indels: 25
0.81 0.13 0.05
Matches are distributed among these distances:
509 3 0.01
510 111 0.29
511 104 0.27
512 161 0.42
513 8 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (509 bp):
CACGTAAGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGCACTC
AACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGGTCAGAC
CGAGGGTTGGGGCAACGAGACTGGCACACATAGCGGGGGACTAGGCCGATCCCCGGCTTGCGCAT
TATGCCTCTCTAGCCAGCTAGACACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
TCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTACACAGCAGGATCAACAGCACGTAGGGGG
GTCAGGCCGATCCCCGACTCACGCATTCTACCTCTTCGGCAGACTGAACGCCCGTACGCTCGTTT
CATGAGTTGGCTTAGGCAGACGATGTTCATTCCATGTCTAAGAACACGGAGTTCATTCCCAATCT
AAGATCAGATCGGATTGAGGGTTGCGACAGCAGGACCAGTTGGAGGATTGACAT
Found at i:14672010 original size:26 final size:25
Alignment explanation
Indices: 14671974--14672025 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14671964 GTTGGCTTAG
*
14671974 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACAGAGTTCATTCAA-GTCTAA
*
14672000 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCAAGTCTAA
14672025 G
1 G
14672026 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCAAGTCTAA
Found at i:14672565 original size:717 final size:694
Alignment explanation
Indices: 14671233--14672739 Score: 2055
Period size: 717 Copynumber: 2.1 Consensus size: 694
14671223 CTTCGATCGA
* * *
14671233 CTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GATGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAG
* * * * *
14671297 AACACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGGACATGTTGGGCTCGGGCATGTG
65 CATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTG
* * * * *
14671362 CTGGTGCCGCATTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCGCCAGAGAGCCTAACCGGCG
130 CTGGTGCCACATTTTTTTCGCCTCGAGCACCATCACCGGAGCATCACCAGAGAGCCTAACCGGCG
** *
14671427 GCATTGGGGGTTCCGGTGATTGGGGGGACCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGC
195 GCATTGGGGGTTCCGGACAATGGGGGGA-----GGGGGTGTGCGCACATGATGTGCAATGGGTGC
14671492 TGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
255 TGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
14671557 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACT
320 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGAGGACACT
*
14671622 TTTTTCAAATGGTCACAAAATCTTTTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
385 TTTTTCAAATGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
14671687 ACAAAAATTTGGGGGCAAAACACTTTCTAAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTT
450 ACAAAAATTTGGGGACAAAACACTTTCTAAAAAAATTTAAAAAAATCTCGAATCGTAAAAAGTTT
* **
14671752 CGAAAATTGTGAAAAATAGAAAACGGGTCGTCTTGCCAAAAAACTTCACATCAAGGCTTAGGGGA
515 CAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCAAAAAACTTCACATCAAGGCTTAGGGGA
14671817 CCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTG
580 CCATTGTATGAATTTACAAGAAATAAAAATGGCA-T---A-GGCAGAAATATGAAGATGTGCTTG
* * * *
14671882 AACCCACCTACCACCCGTTCGATTCTCGGCTTGCGCAAT-CTGCCTCTCTGGCCGG
640 AACCCACCTACCACCCGTTCGATCCCCGACTTGCAC-ATCCTGCCTCTCTGGCCGG
*
14671937 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
14672002 ATACAGAGTTCATT-CCAGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGGCTTGTGCATGTGC
66 ATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGC
* * * *
14672066 TGGTGCTACATTTTTTTCGCC-CGAGCACCATCATCGGAGCATCATCGGAGAGCCTAACCGGCGG
131 TGGTGCCACATTTTTTTCGCCTCGAGCACCATCACCGGAGCATCACCAGAGAGCCTAACCGGCGG
** *
14672130 CATTGGGGGTT-TTGACAATGGGGGGTA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
196 CATTGGGGGTTCCGGACAATGGGGGG-AGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
*
14672193 CTTGGCCCTTATATTGGGCC-CTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
260 CTTGGCCCTTATATT-GGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
14672257 CATTTGAGATTTTATGGGTTTGCTGCCAGTAGCCATTACAGTGTCTG-AAATGAGGACACTTTTT
324 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGAGGACACTTTTT
* *
14672321 TCAAATGGTCACAAAATCTTCTCCAC-TCTGAGTTTTTAGCTGATTTTTTTTTTGCATGCCAAAA
389 TCAAATGGTCACAAAATCTTCTCCACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATG-C----
14672385 AAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACACTTTCTAAAAAAATTTAAAAAAAT
448 ------C-A--A-CA-----A--AAATTTGGGGACAAAACACTTTCTAAAAAAATTTAAAAAAAT
* * * **
14672450 CTTGAATCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGGGTCTTCTTGCCACGAAACTT
496 CTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCAAAAAACTT
* ** *
14672515 CACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATAGGTAGAAATA
561 CACATCAAGGCTTAGGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATAGGCAGAAATA
14672580 TGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGACTTGCACATCCTGCCTCTCTGG
626 TGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGACTTGCACATCCTGCCTCTCTGG
*
14672645 TCGG
691 CCGG
** * * *
14672649 CTGAGCGTTCGCACGCTTGTTTCGTAGGTTGAG-TTAGGCATACGGAGTTCATCCCCA-GTCTAA
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTG-GCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
*
14672712 GCATATGGAGTTCATTCCCAGTCTAAGA
64 GCATACGGAGTTCATTCCCAGTCTAAGA
14672740 TCGAACTGGA
Statistics
Matches: 712, Mismatches: 61, Indels: 51
0.86 0.07 0.06
Matches are distributed among these distances:
694 2 0.00
695 68 0.10
696 139 0.20
697 4 0.01
701 9 0.01
702 48 0.07
703 64 0.09
704 69 0.10
705 2 0.00
706 1 0.00
707 1 0.00
709 1 0.00
710 2 0.00
711 2 0.00
712 136 0.19
713 15 0.02
715 1 0.00
716 1 0.00
717 147 0.21
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (694 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCACATTTTTTTCGCCTCGAGCACCATCACCGGAGCATCACCAGAGAGCCTAACCGGCGG
CATTGGGGGTTCCGGACAATGGGGGGAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATGAGGACACTTTTTTC
AAATGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATTTGGGGACAAAACACTTTCTAAAAAAATTTAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGGGTCGTCTTGCCAAAAAACTTCACATCAAGGCTTAGGGGACCATTG
TATGAATTTACAAGAAATAAAAATGGCATAGGCAGAAATATGAAGATGTGCTTGAACCCACCTAC
CACCCGTTCGATCCCCGACTTGCACATCCTGCCTCTCTGGCCGG
Found at i:14672722 original size:26 final size:26
Alignment explanation
Indices: 14672686--14672738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14672676 GTTGAGTTAG
14672686 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14672712 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14672738 G
1 G
14672739 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14673039 original size:158 final size:156
Alignment explanation
Indices: 14672752--14673212 Score: 491
Period size: 158 Copynumber: 2.9 Consensus size: 156
14672742 GAACTGGACA
** *
14672752 GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGACC-GACCAGTCCCCGGCTTGCGCATT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGACCAAT-CCCGGCTTGCGCATT
* * *
14672816 TTGCCTCCCCGGTCGACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGT
65 ATGCCTCTCCGGTCG-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACA-GAGT
* *
14672880 TCATTCCATGTCTAAGCCCTAGCCAGATC
128 TCATTCCATGTCTAAGCCCAAACCAGATC
* *
14672909 GAGGGTTGTGGCAGC-GAGA-CTGACAGCACGCAGAGGGGGACCGGATCAATCCTCGGCTTGCGC
1 GAGGGTTGCGGCAGCAG-GATC-GACAGCACGCAG-GGGGGACCGGACCAATCC-CGGCTTGCGC
* * * ** * * *
14672972 ATTATACCTCTCCAGTCGCTCAGTGCTTGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
62 ATTATGCCTCTCCGGTCGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAG
** *
14673037 TTCATTCC-TAGTCTAAGATCAAATCAGATC
127 TTCATTCCAT-GTCTAAGCCCAAACCAGATC
* * * * **
14673067 GAGGGTTGCGGTAGCAGGATCGACAACACGCAGGGGGGACTGGGCTGATCCCTGGCTTGCGCATT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGACCAATCCC-GGCTTGCGCATT
* * * ** * *
14673132 CTGCCTCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
65 ATGCCTCTCCGGTC-GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTT
14673197 CATTCCATGTCTAAGC
129 CATTCCATGTCTAAGC
14673213 ATACGGAGTT
Statistics
Matches: 247, Mismatches: 45, Indels: 23
0.78 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 61 0.25
158 150 0.61
159 33 0.13
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGACCAATCCCGGCTTGCGCATTA
TGCCTCTCCGGTCGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCCCAAACCAGATC
Found at i:14673221 original size:26 final size:26
Alignment explanation
Indices: 14673185--14673237 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14673175 GTTGGCTTAG
14673185 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14673211 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14673237 G
1 G
14673238 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14673357 original size:184 final size:184
Alignment explanation
Indices: 14673027--14673395 Score: 488
Period size: 184 Copynumber: 2.0 Consensus size: 184
14673017 GTTGACTTAG
* * * *
14673027 GCATACAGAGTTCATTCCTAGTCTAAGATCAAATCAGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGATAGCAGGATCGACA
* * ** * * *
14673092 ACACGCAGGGGGGACTGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACC
66 ACACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAACACC
* * *
14673157 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CACACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAA
* * * * *
14673211 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGATCGCAGGATTGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGATC-GAGGGTTACGATAGCAGGATCGAC
* * **
14673275 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAATGC
65 AACACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAACAC
* * *
14673340 CCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAA
130 CCACACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAA
14673395 G
1 G
14673396 TCCCAGCTGG
Statistics
Matches: 158, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 1 0.01
184 157 0.99
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGATAGCAGGATCGACA
ACACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAACACC
CACACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAA
Found at i:14674229 original size:25 final size:26
Alignment explanation
Indices: 14674194--14674245 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14674184 GTTGGCTTAG
14674194 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14674220 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14674245 G
1 G
14674246 ATCAGGTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14674540 original size:159 final size:157
Alignment explanation
Indices: 14674220--14674717 Score: 401
Period size: 159 Copynumber: 3.2 Consensus size: 157
14674210 CCCAGTCTAA
* * * * * * *
14674220 GCATA-GGAGTTCATTCCCA-GTCTAAGATCAGGTCGGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGATCAGACCGAGGGTTACGGCAGCAGGA-CCAC
* ** * * * * * * * * * * **
14674283 AGCATGCAGGGGGGACTGGGTCGATTCCCGGCTTACGCGTTATACATCTTCGGCCGGTTGAACGT
64 AACACACAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCGGTCGGCTGAGCAC
* * *
14674348 CCGCATGCCCATTTCGTGGGTTGGCTTAG
129 CCACACGCTCATTTCGTGGGTTGGCTTAG
* * * ** *
14674377 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCAGACCGAGGGTTACGGCAGCAGGACCA-C
* * * * * * * *
14674441 AGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTTAGCG
64 AACACACAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCGGTCGGCTGAGCA
* * *
14674506 CCCACACGCTCATTTCGTGGGTTGACCTAT
128 CCCACACGCTCATTTCGTGGGTTGGCTTAG
* * * * * **
14674536 GCATACGGAGTTCTTTCCCA-ATCTAAGATCAGATCAGACTGAGGGTTACGGTAGCAGGATGACA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGATCAGACCGAGGGTTACGGCAGCAGGACCACA
* * * *
14674600 ACACATAGGGGGGACCGGGTCGATCCCTGACTTACGCATTCTACCTCTCCGGTCGGCTGAGCACC
65 ACACACAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCGGTCGGCTGAGCACC
* * *
14674665 CGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CACACGCTCATTTCGTGGGTTGGCTTAG
*
14674693 GCATATGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
14674718 GGCATACGGA
Statistics
Matches: 271, Mismatches: 62, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 97 0.36
158 58 0.21
159 110 0.41
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGATCAGACCGAGGGTTACGGCAGCAGGACCACAA
CACACAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCGGTCGGCTGAGCACCC
ACACGCTCATTTCGTGGGTTGGCTTAG
Found at i:14675840 original size:26 final size:26
Alignment explanation
Indices: 14675793--14675842 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14675783 GGCATAGGCA
*
14675793 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATATCTAAGCG
14675819 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
14675843 ATCGGATCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCG
Found at i:14676171 original size:26 final size:26
Alignment explanation
Indices: 14676135--14676187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14676125 GTTGACTTAG
14676135 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14676161 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14676187 G
1 G
14676188 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14676533 original size:26 final size:26
Alignment explanation
Indices: 14676503--14676555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14676493 GTTGACTTAG
14676503 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14676529 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14676555 G
1 G
14676556 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14676916 original size:322 final size:324
Alignment explanation
Indices: 14676293--14676934 Score: 860
Period size: 323 Copynumber: 2.0 Consensus size: 324
14676283 TGAGTGCCTG
* *
14676293 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCTAGTCGGAC
1 CACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGTCGGAC
* * *
14676358 CGAGTGTTGTGGCAGCAGGATCGGCAGCGGGATCGACAACATACAGAGGGGGATCGGGCTAAGCC
66 CGAGGGTTGTGGCAGCAGGAACGGCAGCGGGATCGACAACACACAGAGGGGGATCGGGCTAAGCC
* * * * * * *
14676423 CCAGCTTGCACATTTTGCCTCTTCGGCCGGCTTCTTCGGTCAGTTGAGTGCCCATACACTCGTTT
131 CCAACTTACACATTATGCCTCTTCGGCCGGCTCCCTCGGTCAGTTGAGCGCCCACACACTCGTTT
* *
14676488 CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCT
196 CATGGATTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCT
** * *
14676553 AAGATCGGACCAGACCGAGGGTTGCGGTAACAGGATCGATAGCATGCA-GGGGGATCGAGCCGA
261 AAGATCAAACCAGACCGAGGGTTGCGGCAACAGGATCGATAGCACGCAGGGGGGATCGAGCCGA
* ** *
14676616 CACGCTTGTTTCATGGGATGGCTTAGGCATGTGGAGTTCATTCCATGTCTAAGCTCCAG-CTGGA
1 CACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGTC-GGA
* * * * * * *
14676680 CTGAGGGTTGTGGCAGCAGGAACGGTAGCGGGATCGACAGCACGCAGTGGGGGATCGGGCTGATC
65 CCGAGGGTTGTGGCAGCAGGAACGGCAGCGGGATCGACAACACACAGAGGGGGATCGGGCTAAGC
* * * * * * *
14676745 CCTAACTTACGCGTTATGCCTCTTCGGCC-GC-CCCTCAGTTCGGTTGAGCGCCCGCACGCTCGT
130 CCCAACTTACACATTATGCCTCTTCGGCCGGCTCCCTC-GGTCAGTTGAGCGCCCACACACTCGT
* **
14676808 TTCATGGATTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTTATTTTCAGT
194 TTCATGGATTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGT
* **
14676873 CTAAGATCAAACCGGACCGAGGGTTGCGGCAGTAGGATCGATAGCACGCAGGGGGGATCGAG
259 CTAAGATCAAACCAGACCGAGGGTTGCGGCAACAGGATCGATAGCACGCAGGGGGGATCGAG
14676935 GCGATCCCCG
Statistics
Matches: 274, Mismatches: 42, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
321 3 0.01
322 126 0.46
323 145 0.53
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (324 bp):
CACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGTCGGAC
CGAGGGTTGTGGCAGCAGGAACGGCAGCGGGATCGACAACACACAGAGGGGGATCGGGCTAAGCC
CCAACTTACACATTATGCCTCTTCGGCCGGCTCCCTCGGTCAGTTGAGCGCCCACACACTCGTTT
CATGGATTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCT
AAGATCAAACCAGACCGAGGGTTGCGGCAACAGGATCGATAGCACGCAGGGGGGATCGAGCCGA
Found at i:14677345 original size:343 final size:340
Alignment explanation
Indices: 14676791--14677534 Score: 897
Period size: 343 Copynumber: 2.2 Consensus size: 340
14676781 AGTTCGGTTG
* * * * *
14676791 AGCGCCCGCACGCTCGTTTCATGGATTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATA
1 AGCGCCCGTACGCTCATTTC-TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * ** * * ** *
14676856 CGGAGTTTATTTTCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGTAGGATCGATAGCACG
65 CGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAACAGGATCGACAGCACG
* * * *
14676921 CAGGGGGGATCGAGGCGATCCCCGACTTGCGCATTTTGTCTCTCCTGCCGGTTGAGCGCCCGCAC
130 CAGGGGGGATCGAGGCGATCCCCGACTTGCGCATTTTGCCTCTCCTGCCAGCTGAGCCCCCGCAC
* * *
14676986 GTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC-CA
195 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTCA
* *
14677050 GGAGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGA-CTGGGCCGATCCCC-AGCTTACGCA
260 GG-GTTGTGGCAGCAGCACCGACAGCACGCAG-GGGGGATC-GGGCCGATCCCCGA-CTTACGCA
*
14677113 TTATGCCTCTTCAGCCGGCTC
321 TTATGCCTCTAC-GCCGGCTC
* *
14677134 AGCGCCCGTACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTA
1 AGCGCCCGTACGCTCATTTC-TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * * * *
14677199 TGAAGTTCATTCCCAGTCTAAGGTCAGACCGGATCGAGGGTTACAGCAACAGGATCGGCATCACG
65 CGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAACAGGATCGACAGCACG
* * * * *
14677264 CAGGGGGGATTG-GGCCTATCCCCGGCTTGTGCATTTTGCCTCTCC-GATCAGCTGAGCCCCCGC
130 CAGGGGGGATCGAGG-CGATCCCCGACTTGCGCATTTTGCCTCTCCTG-CCAGCTGAGCCCCCGC
* *
14677327 ACGCCCGTTT-GATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCTAGCCAGAC
193 ACGCCCGTTTCG-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
* * * * * * *
14677391 TGAGGGTTGTGGCAGCAGCACTGGCAGCACGTAGGGGGGATCGGGTCGATCTCCGACTTGCGCAT
257 TCAGGGTTGTGGCAGCAGCACCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCAT
*
14677456 TATGCCTCTACGGCGGCTC
322 TATGCCTCTACGCCGGCTC
* * * *
14677475 AACGCCCGTACGCTCATTTCTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
1 AGCGCCCGTACGCTCATTTCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
14677535 ATTAGATCTG
Statistics
Matches: 342, Mismatches: 53, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
340 37 0.11
341 25 0.07
342 38 0.11
343 239 0.70
344 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (340 bp):
AGCGCCCGTACGCTCATTTCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGCAACAGGATCGACAGCACGC
AGGGGGGATCGAGGCGATCCCCGACTTGCGCATTTTGCCTCTCCTGCCAGCTGAGCCCCCGCACG
CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTCAG
GGTTGTGGCAGCAGCACCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTATG
CCTCTACGCCGGCTC
Found at i:14678393 original size:26 final size:26
Alignment explanation
Indices: 14678357--14678407 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14678347 TGACTTAGGT
14678357 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
14678383 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
14678408 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:14678725 original size:26 final size:26
Alignment explanation
Indices: 14678695--14678748 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
14678685 TGGGTTGACT
14678695 TATGCATACG-GAGTTCATCCCCAGTC
1 TATGCATACGTG-GTTCATCCCCAGTC
* *
14678721 TATGCATATGTGGTTCATTCCCAGTC
1 TATGCATACGTGGTTCATCCCCAGTC
14678747 TA
1 TA
14678749 AGATCAGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (26 bp):
TATGCATACGTGGTTCATCCCCAGTC
Found at i:14678989 original size:343 final size:343
Alignment explanation
Indices: 14678344--14679067 Score: 952
Period size: 343 Copynumber: 2.1 Consensus size: 343
14678334 CCACTCGCTT
* *
14678344 GGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * * * * * *
14678409 TTGGACTGGATCGAGGGTTGCAGCAACAGGATCGACAGCACGTAAGGGGGATCGGGTCGATCCTC
66 TCAGACCGAACCGAGGGTTGCAGCAACAGGATCGACAACACGCAAGGGGGACCGAGCCGAGCCTC
* * * * * *
14678474 GGCTTGCGCATTCTGCCTCTCCAACTGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
131 GACTTGCGCATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * ** *
14678539 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGTTGGACCGGCA
196 GCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACCGACA
* * * *
14678604 GCACGCAGAGGGGGATCGGGTCGATCCCGAGCTTGCGCATTATGCCTCTTCGACCTGCTCAACGC
261 GCACGCAGAGGGGGACCGGGTCGATCCCCAGCTCGCGCATTATGCCTCTTCGACCGGCTCAACGC
*
14678669 CCGCACGCTCGTTTCATG
326 CCGCACGCTCATTTCATG
* *
14678687 GGTTGACTTATGCATACGGAGTTCATCCCCAGTCTATGCATATGTG-GTTCATTCCCAGTCTAAG
1 GGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACG-GAGTTCATTCCCAGTCTAAG
** * *
14678751 ATCAGACCGAACCGAGGGTTGC-GACAGTAGGATCGGCAACACGCAGGGGGGACCGAGCCGAGCC
65 ATCAGACCGAACCGAGGGTTGCAG-CAACAGGATCGACAACACGCAAGGGGGACCGAGCCGAGCC
* ** *
14678815 TTGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTT
129 TCGACTTGCGCATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTT
*
14678880 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGTAGCGGGACCGA
194 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACCGA
* * **
14678945 CAGCATGCAGAGGGGGACCGGG-CTGA-CCCTCAGCTCGTGCATTATGCCTCTTCGGTCGGCTCA
259 CAGCACGCAGAGGGGGACCGGGTC-GATCCC-CAGCTCGCGCATTATGCCTCTTCGACCGGCTCA
**
14679008 GTGCCCGCACGCTCATTTCATG
322 ACGCCCGCACGCTCATTTCATG
* *
14679030 GGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAG
1 GGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAG
14679068 ATCAGACCAG
Statistics
Matches: 328, Mismatches: 49, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
342 5 0.02
343 322 0.98
344 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGAACCGAGGGTTGCAGCAACAGGATCGACAACACGCAAGGGGGACCGAGCCGAGCCTC
GACTTGCGCATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACCGACA
GCACGCAGAGGGGGACCGGGTCGATCCCCAGCTCGCGCATTATGCCTCTTCGACCGGCTCAACGC
CCGCACGCTCATTTCATG
Found at i:14679028 original size:159 final size:158
Alignment explanation
Indices: 14678787--14679224 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 158
14678777 GTAGGATCGG
* * ** * * * * * *
14678787 CAACACGCAGGGGGGACCGAGCCGA-GCCTTGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGC
1 CAACACGCAGGGGGGACCGGGCCGATCCCCAG-CTCGCGAATTATGCCTCTCCGACCGGCTCAGC
* * * *
14678851 ACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-A
65 ACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGA
* * * * * * * *
14678915 TCGGATCGAGGGTTGTGGTAGCGGGACCGA
129 CCAGACCAAAGGTTATGGCAGCAGGACCGA
* * * * * * **
14678945 CAGCATGCAGAGGGGGACCGGGCTGA-CCCTCAGCTCGTGCATTATGCCTCTTCGGTCGGCTCAG
1 CAACACGCAG-GGGGGACCGGGCCGATCCC-CAGCTCGCGAATTATGCCTCTCCGACCGGCTCAG
** * * * *
14679009 TGCCCGCACGCTCATTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATCAG
64 CACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAG
*
14679073 ACCAGACCAAAGGTTATGGCAGCAGGATCGA
128 ACCAGACCAAAGGTTATGGCAGCAGGACCGA
* * * *
14679104 CAACACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGAATTTTGCCTCTCCGACCGGCTGAGCA
1 CAACACGCAGGGGGGACCGGGCCGATCCCCAGCTCGCGAATTATGCCTCTCCGACCGGCTCAGCA
* * *
14679169 CCCGCATGCTCGTTTCATGGGTTGGCGTAGGCATACGGAGTTCATTCCATGTCTAA
66 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
14679225 CCATACGGAG
Statistics
Matches: 221, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 95 0.43
159 119 0.54
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
CAACACGCAGGGGGGACCGGGCCGATCCCCAGCTCGCGAATTATGCCTCTCCGACCGGCTCAGCA
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACC
AGACCAAAGGTTATGGCAGCAGGACCGA
Found at i:14679191 original size:158 final size:156
Alignment explanation
Indices: 14678733--14679224 Score: 504
Period size: 158 Copynumber: 3.1 Consensus size: 156
14678723 TGCATATGTG
* * * *
14678733 GTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGGCAACACGCAG
1 GTTCATT-CCATGTCTAAGATCAGACCG-ACCGAGGGTTGTGGCAGCAGGATCGACAACACGCAG
* ** * * * *
14678797 GGGGGACCGAGCCGAGCCTTGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCATGCC
64 GGGGGACCGGGCCGA-CCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCATGCT
14678862 CGTTTCATGGGTTGGCTTAGGCATACGGA
128 CGTTTCATGGGTTGGCTTAGGCATACGGA
** * * * * * * *
14678891 GTTCATTCCATGTCTAAGCCCCA-ATCGGATCGAGGGTTGTGGTAGCGGGACCGACAGCATGCAG
1 GTTCATTCCATGTCTAAG-ATCAGA-CCGACCGAGGGTTGTGGCAGCAGGATCGACAACACGCAG
* * * * * * * ** *
14678955 AGGGGGACCGGGCTGACCCTCAGCTCGTGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGC
64 -GGGGGACCGGGCCGACCC-CGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCATGC
* * * *
14679020 TCATTTCATGGGTTGACTTATGCATATGGA
127 TCGTTTCATGGGTTGGCTTAGGCATACGGA
* * *
14679050 GTTCATTCCCA-GTCTAAGATCAGACCAGACCAAAGGTTATGGCAGCAGGATCGACAACACGCAG
1 GTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTGTGGCAGCAGGATCGACAACACGCAG
* * *
14679114 GGGGGACCGGGCCGATCCCCGGCTTGCGAATTTTGCCTCTCCGACCGGCTGAGCACCCGCATGCT
64 GGGGGACCGGGCCGA-CCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCATGCT
*
14679179 CGTTTCATGGGTTGGCGTAGGCATACGGA
128 CGTTTCATGGGTTGGCTTAGGCATACGGA
14679208 GTTCATTCCATGTCTAA
1 GTTCATTCCATGTCTAA
14679225 CCATACGGAG
Statistics
Matches: 260, Mismatches: 64, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 131 0.50
159 120 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
GTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGCAGGATCGACAACACGCAGGG
GGGACCGGGCCGACCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCATGCTCGT
TTCATGGGTTGGCTTAGGCATACGGA
Found at i:14679250 original size:26 final size:26
Alignment explanation
Indices: 14679200--14679250 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14679190 TTGGCGTAGG
*
14679200 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATGCCTAAC
14679226 CATACGGAGTTCATTCCCA-GCCTAA
1 CATACGGAGTTCATT-CCATGCCTAA
14679251 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGCCTAAC
Found at i:14679937 original size:26 final size:26
Alignment explanation
Indices: 14679908--14679957 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14679898 GTTGACTTAG
14679908 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14679934 GCATACATAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
14679958 CTGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14680447 original size:26 final size:26
Alignment explanation
Indices: 14680410--14680462 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14680400 CTTGGATTAG
*
14680410 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCAT-TCTAA
14680436 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCATTCTAA
14680462 G
1 G
14680463 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCATTCTAA
Found at i:14681681 original size:26 final size:26
Alignment explanation
Indices: 14681651--14681703 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14681641 GTCGGCTTAG
14681651 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
14681677 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14681703 G
1 G
14681704 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14682892 original size:26 final size:26
Alignment explanation
Indices: 14682862--14682914 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14682852 GTTGGCTTAG
14682862 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
14682888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14682914 G
1 G
14682915 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14683270 original size:26 final size:25
Alignment explanation
Indices: 14683241--14683292 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14683231 GGTTGACTAG
*
14683241 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGT-TAA
*
14683267 GCATACAGAGTTCATTCCCAGTTAA
1 GCATACAGAGTTCATCCCCAGTTAA
14683292 G
1 G
14683293 ATCGACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCAGTTAA
Found at i:14684640 original size:26 final size:26
Alignment explanation
Indices: 14684604--14684656 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14684594 GTTGACTTAG
14684604 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14684630 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14684656 G
1 G
14684657 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14685911 original size:26 final size:26
Alignment explanation
Indices: 14685875--14685927 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14685865 GTTGACTTAG
*
14685875 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14685901 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14685927 G
1 G
14685928 ATCAAGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14686207 original size:159 final size:160
Alignment explanation
Indices: 14685973--14686405 Score: 453
Period size: 159 Copynumber: 2.7 Consensus size: 160
14685963 ACAACACGTA
* * * * * * * *
14685973 GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTAGTTGAGCCCCCGCACAC
1 GGGGCGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCACCCGTACAC
* * * * *
14686038 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAG-TCGGACCGAG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAG
* ** *
14686102 TGTTGTGGTAGCGGGACCAACAGCACGCA-
131 GGTTACGGTAGCAGGACCAACAGCACGCAT
* * * * * * *
14686131 GAGTGG-GATCGAGTCGGTCCCCGGCTTGCGCATTATGCCTTTTCGACTGGCTCAGCATCCGTAC
1 G-G-GGCGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCACCCGTAC
* ** * *
14686195 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCTGTCTAAG-ATCAGATCAGACCG
64 ACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCG
***
14686259 AGGGTTACGGTAGCAGGATTGACAGCACGCAT
129 AGGGTTACGGTAGCAGGACCAACAGCACGCAT
* * * *
14686291 GGGGCGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCG-GTCGGCTAAGTACCCGTACA
1 GGGGCGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACT-GGCTAAGCACCCGTACA
* * *
14686355 CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14686406 TACGGAGTTC
Statistics
Matches: 220, Mismatches: 48, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
158 7 0.03
159 209 0.95
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
GGGGCGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCACCCGTACAC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAG
GGTTACGGTAGCAGGACCAACAGCACGCAT
Found at i:14686407 original size:26 final size:26
Alignment explanation
Indices: 14686377--14686429 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14686367 GTTGGCTTAG
14686377 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14686403 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14686429 G
1 G
14686430 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14686620 original size:26 final size:26
Alignment explanation
Indices: 14686586--14686637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14686576 TGGCTTAGGC
*
14686586 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACAGAGTTCATTCCCA-GTCTAAGA
14686612 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
14686638 TCAGATCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:14687153 original size:26 final size:26
Alignment explanation
Indices: 14687123--14687175 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14687113 GTTGACTTAG
14687123 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14687149 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14687175 G
1 G
14687176 ATCTAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14687300 original size:184 final size:184
Alignment explanation
Indices: 14686914--14687334 Score: 580
Period size: 184 Copynumber: 2.3 Consensus size: 184
14686904 CAGTGCCCGA
* * * *
14686914 ACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATCCCCAATTTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * *
14686979 TTCCTAGTCTAAGATCGAACCAAAATGAGGGTTGCGGTAGCAGGATCAGCAGCATGCAGGGGGGA
66 TTCCCAGTCTAAGATCGAACCAAAATGAGGGTTACGGTAGCAGGATCAGCAACACGCAGGGGGGA
*
14687044 CCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACAATCGGCTGAGCGCCCGC
131 CCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACAATCGGCTGAGCGCCCAC
* *
14687098 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * *
14687163 TTCCCAGTCTAAGATCTAACCAGACTGAGGGTTACGGTAGCAGGATC-GACAACACGCAGGGGGG
66 TTCCCAGTCTAAGATCGAACCAAAATGAGGGTTACGGTAGCAGGATCAG-CAACACGCAGGGGGG
* * * * *
14687227 ACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTTAGCGCCCAC
130 ACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACAATCGGCTGAGCGCCCAC
* * *
14687282 ATAC-CT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 --ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
14687335 CCCAGCCGAA
Statistics
Matches: 209, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
183 4 0.02
184 201 0.96
185 2 0.01
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGAACCAAAATGAGGGTTACGGTAGCAGGATCAGCAACACGCAGGGGGGA
CCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTACAATCGGCTGAGCGCCCAC
Found at i:14687502 original size:26 final size:26
Alignment explanation
Indices: 14687466--14687518 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14687456 GTTGGCTTAG
14687466 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
14687492 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14687518 G
1 G
14687519 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14688208 original size:26 final size:26
Alignment explanation
Indices: 14688178--14688230 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14688168 GTTGCCTTAG
14688178 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * * *
14688204 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
14688230 G
1 G
14688231 ATCGAATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:14688911 original size:26 final size:26
Alignment explanation
Indices: 14688875--14688927 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14688865 GTTGACTTAG
14688875 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14688901 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14688927 G
1 G
14688928 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14689552 original size:697 final size:683
Alignment explanation
Indices: 14688106--14689599 Score: 1628
Period size: 697 Copynumber: 2.1 Consensus size: 683
14688096 CCACCTGTTC
* * * * * * * * *
14688106 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGTCCGCACACTCGTTTCATGGGTT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTTATGGGTT
* * * *
14688171 GCCTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGATCGA
66 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAA
* * * * * *
14688236 ATCAAGCCGAGGGTTGCGACAGTAGGATCGATAGCACGCAAGGGGGACCAAGTCGATCCCCGGCT
131 ACCAAGCCGAAGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCAACTCGATCCCCGACT
* * *
14688301 TACGCATTCTACCTCTACTTTCGGCTGAGTGCCCATAAGCCCATTTTGTGGGTTGGCTTAGGCAT
196 TACGCATTCTACCTCTACTTTCAGCTCAGTGCCCACAAGCCCATTTTGTGGGTTGGCTTAGGCAT
* * * * *
14688366 AGGGAGTTCATTCGATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACCGACAGCAC
261 AGGGAGTTCATTCCATGTCTAAACCCCAACCAAACCAAGAGTTGTGGCAGCGAGACCGACAGCAC
* *
14688431 GCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCGCCGACCTGTTCAGCACACGA
326 GCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCGCCGACCTGCTCAACACAC-A
* * *
14688496 ACGCTCATTTTGTTGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACT
390 ACGCTCATTTTGTGGGTTCACTTAGGCATACGAAGTTCAGTCACAGTCTAAGATTGGACCGGACT
* * * * ** * *
14688561 GAGGGTTGTGGTAGCAGGATCGATAGCACATAGGGAGGATCGGCTGGTCCCCGGTTTACACATTC
455 GAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGAGGACCGGCCAGTCCCCAGCTTACACATTC
*
14688626 TACCTCTCTGACCGGCTGAGTGCCCGCACACTCATTTTATGGGTTGGCTTAGGCATACAGAGTTC
520 TACCTCTCTGACCGGCTGAGTGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTC
** * * * *
14688691 ATTCCATGTCTAAGCATATGGATTTCATTCCCAGTCTAAGTTCAGACCGGACTGAGTGTTGCAAT
585 ATTCCATGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAAT
* *
14688756 AGCAGGATCGATAGCACGCAGGGGGGTCTAGGCT
650 AGCAGGATCGACAACACGCAGGGGGGTCTAGGCT
* * *
14688790 GATCTCCGGCTTGTGCATTCTGCCTCTCCGGTAGGCTTCTCCGACCCGCTGATCGCCCACACGCT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCC-G-A------T-CG----GCTGAGCGCCCGCACGCT
* * *
14688855 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
53 CATTTTATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCC
* * * * * * **
14688920 AGTCTAAGATCAAACC-GGACCGAAGGTTGCGGCCA-CAGGATCGGCAGCATGCAGGGGGGTCGG
118 AGTCTAAGATCAAACCAAG-CCGAAGGTTGC-GACAGCAGGATCGACAGCACGCAAGGGGGACCA
* * * * * *
14688983 ACT-GATCCCTGACTTGCGCATTCTGCCTC-CCTGGTT-AGCTCAGTGCCCGCACGCCCATTTTG
181 ACTCGATCCCCGACTTACGCATTCTACCTCTACT--TTCAGCTCAGTGCCCACAAGCCCATTTTG
* * *
14689045 TGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAACCCCAACCAAACTAAGAGTTGTGGT
244 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCAAACCAAGAGTTGTGGC
* * * * * * *
14689110 AGCGGGTCCGGCAGCACGCAGAGGGGGATCGGGCTGAT-CCTCGGTTTGCGCATTATGCCTCTCC
309 AGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCGCC
* * *
14689174 GA-CTGGCTCAACTTC-CACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAGTCACA
373 GACCT-GCTCAAC-ACACA-ACGCTCATTTTGTGGGTTCACTTAGGCATACGAAGTTCAGTCACA
* * *
14689237 GTCTAAGATTGGATCGGA-TCGAGGGTTGTGGCAGCAGGATCGACAGCACCCAGGGGGGACCAGG
435 GTCTAAGATTGGACCGGACT-GAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGAGGACC-GG
* ** * * * * * *
14689301 CCAGTCCCTAGCTTACGTATTCTGCCTCTCTGGCCGGTTGAGTGCCCGTACGCTCGTTTCATGGG
498 CCAGTCCCCAGCTTACACATTCTACCTCTCTGACCGGCTGAGTGCCCGCACACTCATTTCATGGG
14689366 TTGGCTTAGGCATACTA-AGTTCATTCCATGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGAT
563 TTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGAT
*
14689430 CAGATCAGA-TCGAGGGTTGCGATAGTAGGACCAGTCGCAAGATCGACAACACGCAGGGGAGGAT
627 CAGACCAGACT-GAGGGTTGC-A-A-TA-G--CA---G---GATCGACAACACGCAGGGG-GG-T
*
14689494 C-GGGCT
677 CTAGGCT
*
14689500 GATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTTATGGGTT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTTATGGGTT
* * *
14689565 GGCTTAGGCATACGAATTTCAT-TCCATGTCTAAGC
66 GACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGC
14689600 CCCAGCCGGA
Statistics
Matches: 665, Mismatches: 105, Indels: 67
0.79 0.13 0.08
Matches are distributed among these distances:
684 25 0.04
685 1 0.00
692 1 0.00
693 2 0.00
695 9 0.01
696 258 0.39
697 299 0.45
698 5 0.01
699 1 0.00
700 2 0.00
701 3 0.00
702 1 0.00
703 2 0.00
706 1 0.00
708 1 0.00
709 18 0.03
710 34 0.05
711 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (683 bp):
GATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTTATGGGTT
GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAA
ACCAAGCCGAAGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCAACTCGATCCCCGACT
TACGCATTCTACCTCTACTTTCAGCTCAGTGCCCACAAGCCCATTTTGTGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAACCCCAACCAAACCAAGAGTTGTGGCAGCGAGACCGACAGCAC
GCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCGCCGACCTGCTCAACACACAA
CGCTCATTTTGTGGGTTCACTTAGGCATACGAAGTTCAGTCACAGTCTAAGATTGGACCGGACTG
AGGGTTGTGGCAGCAGGATCGACAGCACACAGGGAGGACCGGCCAGTCCCCAGCTTACACATTCT
ACCTCTCTGACCGGCTGAGTGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAATA
GCAGGATCGACAACACGCAGGGGGGTCTAGGCT
Found at i:14690327 original size:881 final size:879
Alignment explanation
Indices: 14688760--14690413 Score: 2102
Period size: 881 Copynumber: 1.9 Consensus size: 879
14688750 TGCAATAGCA
* * * * *
14688760 GGATCGATAGCACGCAGGGGGGTCTAGGCTGATCTCCGGCTTGTGCATTCTGCCTCTCCGGTAGG
1 GGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTAGG
* * * *
14688825 CTTCTCCGACCCGCTGATCGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
66 CCTCTCCAACCCGCTGATCGCCCACACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
14688890 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAAGGTTGCGGCCA
131 CCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTACGGCAA
* * ** * * *
14688955 CAGGATCGGCAGCATGCAGGGGGGTCGGACTGATCCCTGACTTGCGCATTCTGCCTCCCTGGTTA
196 CAGGATCGACAGCACGCAGGGGGAACGGACCGATCCCCGACTTGCACATTCTGCCTCCCTGGTTA
** * * *
14689020 GCTCAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAA
261 GCTCAGCACCCGCACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
* * * *
14689085 CCCCAACCAAACTAAGAGTTGTGGTAGCGGGTCCGGCAGCACGCAGAGGGGGATCGGGCTGATCC
326 CCCCAACCAAACTAAGAGTTGTGGCAGCGGGTCCGGCAGCACGCAAAGGGGGACCAGGCTGATCC
* * * *
14689150 TCGGTTTGCGCATTATGCCTCTCCGACTGGCTCAACTTCCACACGCTCATTTTGTGGGTTGACTT
391 TCGGCTTACGCATTATGCCTCTCCGACTGGCTCAACTCCCACACGCTCATTTCGTGGGTTGACTT
* * * * * * *
14689215 AGGCATACGGAGTTCAGTCACAGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGCAGGATCGA
456 AGGCATACAGAGTTCAGTCACAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGAAGAATCAA
* * * * *
14689280 CAGCACCCAGGGGGGACCAGGCCAGTCCCTAGCTTACGTATTCTGCCTCTCTGGCCGGTTGAGTG
521 CAGCACCCAGAGGGGACCAGGCCAGTCCCTAGCTTACGCATTCTACCTCTCCGGCCAGTTGAGTG
14689345 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAGCATAAAGA
586 CCCG-ACGCTCGTTTCATGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAGCATAAAGA
* * *
14689410 GTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGAT-AGTAGGACCAGTC-GCAAGAT
650 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGC-ATCAGCAGGACCA-ACAGCAAGAT
* * **
14689473 CGACAACACG-CAGGGGAGGATCGGG-CTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGC
713 CGACAACACGTAAGGGG-GGATCGGGTC-AATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGC
14689536 TGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGAATTTCATTCCATGTCTAAGCC
776 TGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGAATTTCATTCCATGTCTAAGCC
14689601 CCAGCCGGATCGAGGGTTATGGTAGCAGGACCAGCAGCG
841 CCAGCCGGATCGAGGGTTATGGTAGCAGGACCAGCAGCG
* * *
14689640 GGATCGGTAGCATGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCC-GTC
1 GGATCGATAGCACGCAG-GGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTC-TCCGGTA
* * * ** * *
14689704 GGCCTCTCTAACCGGTTGAGT-GCCCGTATGCTCATTTCGTAGGTTGACTTAGGCATGCGGAGTT
64 GGCCTCTCCAACCCGCTGA-TCGCCCACACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTT
* *
14689768 CA-CCCCTAGTCTAAGCATACGAACTTCATTCCTAGTCTAAGATCAGACCAGACC-AAGGGTTAC
128 CATCCCC-AGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAAACCAGACCGAA-GGTTAC
* * *
14689831 GGCAACAGGATCGACAGCACGTAGCGGGGAACGGGCCGATCCCCGACTTGCACATTCTGCCTCTC
191 GGCAACAGGATCGACAGCACGCAG-GGGGAACGGACCGATCCCCGACTTGCACATTCTGCCTCCC
* * * *
14689896 TGGTTTA-CTGAGCACCCGTATGCCCATTTCGTGGGTTAGCTTCGGCATAGGGAGTTCATTCCAT
255 TGG-TTAGCTCAGCACCCGCACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCAT
* * * *
14689960 GTCTAAGCCCCAACCGAACT-GGAGGTTGTGGCAGCGGGAT-CGGTAGCACGCAAAGGGGGACCA
319 GTCTAAACCCCAACCAAACTAAGA-GTTGTGGCAGCGGG-TCCGGCAGCACGCAAAGGGGGACCA
* * * * *
14690023 GGCTGATCCTCGGCTTACGTATTATGCCTCTTCGA-TCGGGT-TAGTGCCCGA-ACGCTCATTTC
382 GGCTGATCCTCGGCTTACGCATTATGCCTCTCCGACT-GGCTCAACT-CCC-ACACGCTCATTTC
* *
14690085 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGA-CTGAGGGTTGCG
444 GTGGGTTGACTTAGGCATACAGAGTTCAGTCACAGTCTAAGATTGGACCAGATC-GAGGGTTGCG
* * ** * * *
14690149 GCAGAAGAATCAATAGTATGCAGAGGGGACCGGGCCGGT-CCTTGACTTACGCATTCTACCTCTC
508 GCAGAAGAATCAACAGCACCCAGAGGGGACCAGGCCAGTCCCTAG-CTTACGCATTCTACCTCTC
* *
14690213 CGGTCAGTTGAGTGACCC-ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-ATAGTTCATTCCAT
572 CGGCCAGTTGAGTG-CCCGACGCTCGTTTCATGGGTTGGCTTAGGCATACTA-AGTTCATTCCAT
**
14690276 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCATCAGCAGGA
635 GTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCATCAGCAGGA
* * * *
14690341 CCAACAGTAGGATCGATAACACGTAAGGGGGGATCGGGTCAATCCTCGGCTTACGCATTCTGCCT
700 CCAACAGCAAGATCGACAACACGTAAGGGGGGATCGGGTCAATCCCCGGCTTACGCATTCTGCCT
14690406 CTCCGATC
765 CTCCGATC
14690414 AGCCTCTCCG
Statistics
Matches: 655, Mismatches: 99, Indels: 39
0.83 0.12 0.05
Matches are distributed among these distances:
880 25 0.04
881 319 0.49
882 303 0.46
883 8 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (879 bp):
GGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTAGG
CCTCTCCAACCCGCTGATCGCCCACACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTACGGCAA
CAGGATCGACAGCACGCAGGGGGAACGGACCGATCCCCGACTTGCACATTCTGCCTCCCTGGTTA
GCTCAGCACCCGCACGCCCATTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
CCCCAACCAAACTAAGAGTTGTGGCAGCGGGTCCGGCAGCACGCAAAGGGGGACCAGGCTGATCC
TCGGCTTACGCATTATGCCTCTCCGACTGGCTCAACTCCCACACGCTCATTTCGTGGGTTGACTT
AGGCATACAGAGTTCAGTCACAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGAAGAATCAA
CAGCACCCAGAGGGGACCAGGCCAGTCCCTAGCTTACGCATTCTACCTCTCCGGCCAGTTGAGTG
CCCGACGCTCGTTTCATGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAGCATAAAGAG
TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCATCAGCAGGACCAACAGCAAGATCGA
CAACACGTAAGGGGGGATCGGGTCAATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGC
ACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGAATTTCATTCCATGTCTAAGCCCCAGC
CGGATCGAGGGTTATGGTAGCAGGACCAGCAGCG
Found at i:14690500 original size:25 final size:26
Alignment explanation
Indices: 14690466--14690517 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14690456 GTTGACTTAG
*
14690466 GCATACGGAGT-TCGTCCCAGTCTAA
1 GCATACGGAGTATAGTCCCAGTCTAA
*
14690491 GCATACGGAGTATATTCCCAGTCTAA
1 GCATACGGAGTATAGTCCCAGTCTAA
14690517 G
1 G
14690518 ATCTAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTATAGTCCCAGTCTAA
Found at i:14691458 original size:26 final size:26
Alignment explanation
Indices: 14691422--14691472 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14691412 TTGGCTTAGG
*
14691422 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGAAGTTCATTCCCA-GTCTAAT
14691448 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
14691473 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAT
Found at i:14691822 original size:159 final size:157
Alignment explanation
Indices: 14691557--14691941 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 157
14691547 CTTTCCGACC
*
14691557 GGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTA
1 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG-AGTTCATTCCCA-GTCTA
* * * * * * * * *
14691621 AGCCCCAGCTGGACCGAGGGTTGTGGCAACAAGACTGGCAGCACGCAGAGGGGGATCAGGTCGAT
64 AGCACCAGCCGGACCAAGGGTTGCGACAACAAGACTGACAGCACACA-AGGGGGACCAGGCCGAT
* *
14691686 CCCCGACTTGCGTATTATGCCTC-TCTGCCT
128 CCCCGACTTACGCATTATGCCTCTTC-GCCT
* * * * *
14691716 GGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTCAAGCATACAGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * * *
14691781 G-ATCAGACCGGACCAAGGGTTGCGACAGCAGGA-TCGACAGCACACAAGGGGGACCGGGCCGAT
65 GCACCAG-CCGGACCAAGGGTTGCGACAACAAGACT-GACAGCACACAAGGGGGACCAGGCCGAT
* * * *
14691844 CCTCGGCTTACGCATTCTGCCTCTTCGGCT
128 CCCCGACTTACGCATTATGCCTCTTCGCCT
* ** * **
14691874 GGCTGAGCGCCCGCACGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAA
14691939 GCA
65 GCA
14691942 TATAGAGTTC
Statistics
Matches: 183, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 93 0.51
159 86 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAG
CACCAGCCGGACCAAGGGTTGCGACAACAAGACTGACAGCACACAAGGGGGACCAGGCCGATCCC
CGACTTACGCATTATGCCTCTTCGCCT
Found at i:14691917 original size:158 final size:158
Alignment explanation
Indices: 14691526--14691941 Score: 405
Period size: 159 Copynumber: 2.6 Consensus size: 158
14691516 ACTTGGCTGG
* *
14691526 TCCTCGGC-TAGCGCATTCTGCCT-TTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTT
1 TCCTCGGCTTA-CGCATTCTGCCTCTT-CGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * * *
14691589 GGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACAA
64 GGCTTAGGCATACG-AGTTCATTCCCA-GTCTAAGCACCAGCCGGACCAAGGGTTGCGACAACAA
* * * *
14691653 GACTGGCAGCACGCAGAGGGGGATCAGGTCGA
127 GACTGACAGCACACAGAGGGGGACCAGGCCGA
* * * * * * * *
14691685 TCCCCGACTTGCGTATTATGCCTC-TCTGCCTGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTG
1 TCCTCGGCTTACGCATTCTGCCTCTTC-GACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * * * *
14691749 ACTCAAGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCAAGGGTTGCGACAGCAGG
65 GCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCACCAG-CCGGACCAAGGGTTGCGACAACAAG
*
14691813 A-TCGACAGCACACA-AGGGGGACCGGGCCGA
128 ACT-GACAGCACACAGAGGGGGACCAGGCCGA
* * ** *
14691843 TCCTCGGCTTACGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCGCACGCTCATTTTGTTGGTTGG
1 TCCTCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
**
14691908 CTTAGGCATACGGAGTTCATTCCTTGTCTAAGCA
66 CTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCA
14691942 TATAGAGTTC
Statistics
Matches: 204, Mismatches: 44, Indels: 18
0.77 0.17 0.07
Matches are distributed among these distances:
158 94 0.46
159 105 0.51
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
TCCTCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGAGTTCATTCCCAGTCTAAGCACCAGCCGGACCAAGGGTTGCGACAACAAGACT
GACAGCACACAGAGGGGGACCAGGCCGA
Found at i:14692161 original size:197 final size:195
Alignment explanation
Indices: 14691809--14692165 Score: 558
Period size: 197 Copynumber: 1.8 Consensus size: 195
14691799 GTTGCGACAG
* * *
14691809 CAGGATCGACAGCACACAAGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGCT
1 CAGGATCGACAGCACACAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCC
* *
14691874 GGCTGAGCGCCCGCACGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAA
66 GGCTGAGCGCCCGCACGCTCATTTTG-TGGTTGACTTAGGCAGACGGAGTTCATTCCTTGTCTAA
14691939 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGTTTGCGATAGTAGGACCAGCA
130 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGTTTGCGATAGTAGGACCAGCA
14692004 A
195 A
*
14692005 CAGGATCGACAGCACGTA-AAGGGGGACCGGGCCGATCCTTGACTTACGCATTCTGCCTCTCCGG
1 CAGGATCGACAGCAC--ACAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGG
* * *
14692069 CCGGTTGAGTGCCCGCACGCTCGTTCCTTG-GGTTGACTTAGGCAGACGGAGTTCA-TCCTCTGT
64 CCGGCTGAGCGCCCGCACGCTCATT--TTGTGGTTGACTTAGGCAGACGGAGTTCATTCCT-TGT
14692132 CTAAGCATATAGAGTTCATTCCCAGTCTAAGATC
126 CTAAGCATATAGAGTTCATTCCCAGTCTAAGATC
14692166 TAACCTGATT
Statistics
Matches: 147, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
196 19 0.13
197 124 0.84
198 1 0.01
199 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (195 bp):
CAGGATCGACAGCACACAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCC
GGCTGAGCGCCCGCACGCTCATTTTGTGGTTGACTTAGGCAGACGGAGTTCATTCCTTGTCTAAG
CATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGTTTGCGATAGTAGGACCAGCAA
Found at i:14692553 original size:159 final size:157
Alignment explanation
Indices: 14692143--14692638 Score: 428
Period size: 159 Copynumber: 3.1 Consensus size: 157
14692133 TAAGCATATA
** * * *
14692143 GAGTTCATTCCCAGTCTAAGATCTAACCTGATTGAGGGTTGCGGCAGCATGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCTAA-CTGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAA
* * * * *
14692208 GGGGGGACCAGGCTGATCCCC-AGCTTACGCATTTTGCCTCTCTGATCGGCTGAGTGCCCGCACG
65 GGGGGGACCGGGCTGATCCCCGA-CTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACG
* * *
14692272 CCCGTTTCATGGGTTGGCTTAGGCATAGG
129 CCCGTTTCATGGGTTGACTTACGCATACG
** * *
14692301 GAGTTCATT-CCATGTCTAAGCCCTAACCAGACCGAGGGTTGTGGTAGC-GAGATCGACAGCACA
1 GAGTTCATTCCCA-GTCTAAGATCTAA-CTGACCGAGGGTTGTGGCAGCAG-GATCGACAGCAC-
* * * * * * *
14692364 AAAAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGTTCAGCT-CCCG-
62 GAAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAG-TGCCCGC
** *
14692427 ATCGCTTGTTTCATGGGTTGACTTTCGCATACG
126 A-CGCCCGTTTCATGGGTTGACTTACGCATACG
* *
14692460 GAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCTAACT-GACCGAGGGTTGTGGCAGCAGGATCGACAGCACG-A
* * * * * ** ** * * *
14692525 AGGGGGGACCGGGCTGCTCCCCGACTTGCACATTCTACCTTTCCGGCCAACTGAGCGCCTGCACG
64 AGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACG
* * * * *
14692590 CTCGTTTCGTGGGTTGGCTTAGGCATACA
129 CCCGTTTCATGGGTTGACTTACGCATACG
*
14692619 GAGCTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
14692639 CATACAGAGT
Statistics
Matches: 268, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 54 0.20
159 205 0.76
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCTAACTGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAG
GGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCC
CGTTTCATGGGTTGACTTACGCATACG
Found at i:14692661 original size:26 final size:26
Alignment explanation
Indices: 14692612--14692664 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14692602 GTTGGCTTAG
14692612 GCATACAGAGCTCATTCCATGTCTAA
1 GCATACAGAGCTCATTCCATGTCTAA
* *
14692638 GCATACAGAGTTCTTTCACA-GTCTAA
1 GCATACAGAGCTCATTC-CATGTCTAA
14692664 G
1 G
14692665 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCATGTCTAA
Found at i:14692999 original size:712 final size:696
Alignment explanation
Indices: 14691537--14693182 Score: 1903
Period size: 712 Copynumber: 2.3 Consensus size: 696
14691527 CCTCGGCTAG
* * * *
14691537 CGCATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* ** * * *
14691602 GAAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAACAAGACTGGCAGCACGC
66 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGAC-GGCAGCAC-A
* * * * * * *
14691667 AGAGGGGGATCAGG-TCGATCCCCGACTTGCGTATTATGCCTCTCTGCCTGGCTCAGCGCCCGCA
129 AAAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCACCCGCA
* *
14691731 TGCTCGTTTCATGGGTTGACTCAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
193 TGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
* * *
14691796 AGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGACCGGGCCGATCCTCGGCTTACGCATTC
258 AGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGACCGGGCCGATCCCCGACTTACACATTC
* *** * * * *
14691861 TGCCTCTTCGGCTGGCTGAGCGCCCGCACGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGTTC
323 TACCTCTTCGGCCAACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGCTC
* * * * * * ** * *
14691926 ATTCCTTGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGTTTGCGAT
388 ATTCCATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGATACGAC
* *
14691991 AGTAGGACCAGCAACAGGATCGACAGCACGTAAAGGGGGACCGGGCCGATCCTTGACTTACGCAT
453 AGCAGGACCAACAACAGGATCGACAGCACGTAAAGGGGGACCGGGCCGATCCTTGACTTACGCAT
** *
14692056 TCTGCCTCTCCGGCCGGTTGAGTGCCCGCACGCTCGTTCCTTGGGTTGACTTAGGCAGACGGAGT
518 TCTGCCTCTCCGGCCGGTTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCAGACGGAGT
* * * * * ** **
14692121 TCATCCTCTGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCTAACCTGATTGAGGGTTGCG
583 TCATCCCCAGTATAAGCATAGAGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTGCG
* * * *
14692186 GCAGCATGATCGACAGCACGTAGGGGGGACCAGGCTGATCCCCAGCTTA
648 GCAGCAGGATCGACAGCACGAAGGGGGGACCAGGCCGAGCCCCAGCTTA
* * * *
14692235 CGCATTTTGCCTCTCTGATCGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
* * * *
14692300 GGAGTTCATTCCATGTCTAAGCCCTAACCAGACCGAGGGTTGTGGTAGCGAGATCGACAGCACAA
66 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGA-CGGCAGCAC-A
* * *
14692365 AAAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGG-TCGGTTCAGCTCCCG-A
129 AAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCT-GGCTCAGCACCCGCA
* ** *
14692428 TCGCTTGTTTCATGGGTTGACTTTCGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGAC
193 T-GCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGAC
* * * * * *
14692492 CAAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCTGCTCCCCGACTTGCACA
256 CAAGGGTTGCGACAGCAGGATCGACAGCACACAA-GGGGGACCGGGCCGATCCCCGACTTACACA
* *
14692557 TTCTACCT-TTCCGGCCAACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
320 TTCTACCTCTT-CGGCCAACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGA
* *
14692621 GCTCATTCCATGTCTAAGCATACAGAGTTCTTTCACAGTCTAAGATCAGATC-GAACCAAGGGAT
384 GCTCATTCCATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGACCAG-ACCAAGGGAT
* * * * ** *
14692685 AC-AGCAGCGGGACCAACAACAGGATCGGCAGCACGTAAGGGGGGATCGGGTTGGTCCCCGGCTT
448 ACGA-CAGCAGGACCAACAACAGGATCGACAGCACGTAAAGGGGGACCGGGCCGAT---C--C-T
* *
14692749 GTGCATTCTAC-C-TCTCTAACCGGCCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTCCGTGG
506 -TG-ACT-TACGCAT-TCT-----GCCTCTCCGGCCGGTTGAGCACCCGCACGCTCGTTCCGTGG
*
14692812 GTTGACTTAGGTAGACGGAGTTCATCCCCAGTATAAGCATACGA-AGTTCATTCCCAGTCTAAGA
562 GTTGACTTAGGCAGACGGAGTTCATCCCCAGTATAAGCATA-GAGAGTTCATTCCCAGTCTAAGA
*
14692876 TCAAACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGAAGGGGGGACC-GAGCCGAGCCC
626 TCAAACCAAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGAAGGGGGGACCAG-GCCGAGCCC
14692940 CAGCTTGA
690 CAGCTT-A
* * * * *
14692948 -GCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
** * **
14693012 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAGGGTTGTGGCAGCGAGACCGGCAACACGT
66 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGA-CGGCAGCACAA
* * * * * *
14693077 AGGGTGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCAA
130 AAGG-GGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCACCCGCAT
* * *
14693142 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
194 GCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCC
14693183 ATGCCTAAGC
Statistics
Matches: 791, Mismatches: 127, Indels: 46
0.82 0.13 0.05
Matches are distributed among these distances:
697 4 0.01
698 247 0.31
699 171 0.22
702 1 0.00
704 1 0.00
705 1 0.00
706 3 0.00
707 6 0.01
708 3 0.00
711 4 0.01
712 346 0.44
713 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (696 bp):
CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGACGGCAGCACAAA
AGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCACCCGCATGC
TCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
GTTGCGACAGCAGGATCGACAGCACACAAGGGGGACCGGGCCGATCCCCGACTTACACATTCTAC
CTCTTCGGCCAACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGCTCATT
CCATGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGATACGACAGC
AGGACCAACAACAGGATCGACAGCACGTAAAGGGGGACCGGGCCGATCCTTGACTTACGCATTCT
GCCTCTCCGGCCGGTTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCAGACGGAGTTCA
TCCCCAGTATAAGCATAGAGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTGCGGCA
GCAGGATCGACAGCACGAAGGGGGGACCAGGCCGAGCCCCAGCTTA
Found at i:14693139 original size:159 final size:158
Alignment explanation
Indices: 14692888--14693192 Score: 416
Period size: 159 Copynumber: 1.9 Consensus size: 158
14692878 AAACCAAACC
* *
14692888 GAGGGTTGCGGCAGCAGGATCGGCAGCACGAAGGGGGGACCGAGCCGAGCCCCAGCTTGAGCATT
1 GAGGGTTGCGGCAGCAGGACCGGCAACACGAAGGGGGGACCGAGCCGAGCCCCAGCTTGAGCATT
* * * *
14692953 CTACCTCTCCGACCGGTTGAGCGCCCGCACA-CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 CTACCTCTCCGACCGGCTGAGCACCCGCA-AGCCCATTTCATGGGTTGGCTTAGGCATACGGAGT
*
14693017 TCATTCCATGTCTAAGCCCCAGCCAGATT
130 TCATTCCATGCCTAAGCCCCAGCCAGATT
* * * * * *
14693046 GAGGGTTGTGGCAGC-GAGACCGGCAACACGTAGGGTGGGACCGGGCCGATCCCCGGCTTGCGCA
1 GAGGGTTGCGGCAGCAG-GACCGGCAACACGAAGGG-GGGACCGAGCCGAGCCCCAGCTTGAGCA
* * * *
14693110 TTCTGCCTCTCCGGCTGGCTGAGCACCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
64 TTCTACCTCTCCGACCGGCTGAGCACCCGCAAGCCCATTTCATGGGTTGGCTTAGGCATACGGAG
14693175 TTCATTCCATGCCTAAGC
129 TTCATTCCATGCCTAAGC
14693193 ATACGGAGTT
Statistics
Matches: 127, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
157 1 0.01
158 30 0.24
159 96 0.76
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGACCGGCAACACGAAGGGGGGACCGAGCCGAGCCCCAGCTTGAGCATT
CTACCTCTCCGACCGGCTGAGCACCCGCAAGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGCCTAAGCCCCAGCCAGATT
Found at i:14694087 original size:26 final size:26
Alignment explanation
Indices: 14694057--14694109 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14694047 GTTGGCTTAG
14694057 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14694083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14694109 G
1 G
14694110 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14694671 original size:892 final size:896
Alignment explanation
Indices: 14692970--14696629 Score: 4510
Period size: 892 Copynumber: 4.1 Consensus size: 896
14692960 TCCGACCGGT
* * * * *
14692970 TGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCAT-TCCATGTCTAAG
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGCGGAGTTCATCCCCATGTCTAAG
* *
14693033 CCCCAG-CCAGATTGAGGGTTGTGGC-AGC-GAGACCGGCA--ACAC-GTAGGGTGGGACCGGGC
66 CCCCAGACCAGATCGAGGGTTGTCGCTAGCAG-GACCGGCAGTACACAGTA-GG-GGGACCGGGC
* * * *
14693092 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCAAGC-TCATTTCATGGG
128 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG-TACCTTCGTTTCATGGG
* *
14693156 TTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGT
192 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAGT
* * * *
14693221 TTGAGCCATGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTCACCCGGGGCA
257 TTGAGCCACGATGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTTTTTTCACCCAGGGCA
* * * *
14693286 CCATCGTAGCAGCATCACCGGAGCATCGTCGGAGAGCCTAACCAGCGACATTGGGGGTTCCGACG
322 CCATCGTCGGAGCATCACCGGAGCATCGTCAGAGAGCCTAA-CAGCGGCATT-GGGGTTCCGACG
*
14693351 ATT-GGGGGGCCG-GGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCCTATAT
385 ATTGGGGGGGCCGAGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
14693414 TGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
450 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
* * *
14693479 AGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAACGGTCACAAAA
515 AGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAA
*
14693544 TCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACC
580 TCTTCTCCACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACC
* * * **
14693609 TCTACAAAATTTGGGGATGAAAAC-CTTTCTAAAAAAATTTTAAAAAATCCTTAACCGCAAAAAG
644 TCTACCAAATTTGGGGA-CAAAACTCTTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAAAG
* * * * *
14693673 TTTCAAAAATAGTGCAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGAGTAGG
708 TTTCAAAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGT
* * ** *
14693738 GGGCCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCATGGCACAAATTTGAAGATGTGC
773 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATTT-AAGATGTGC
* * *
14693803 TTGAACCCACCTACCACCCGTTCAATCC-CTGGCTTGTGCATTCTGCCTCTTCGGCCGA-C
837 TTGAACCCACCTACCACCCGTTCGATCCTC-GGCTTGCGCATCCTGCCTCTTCGGCCGAGC
* * *
14693862 TGAGCGCCCGCACG-TCCGTTTCGTGGGTTGGCTTAGGCATAGC-GAGTTCAT-TCCATGTGTAA
1 TGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATAGCGGAGTTCATCCCCATGTCTAA
* * *
14693924 GCCCCA-ACCGGATCGAGGGTTGTCGCTA-CAGGACCGGCAGTACACAG-AGGGGGACTGGGTCG
65 GCCCCAGACCAGATCGAGGGTTGTCGCTAGCAGGACCGGCAGTACACAGTAGGGGGACCGGGCCG
* *
14693986 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGTACACTT-GTTTCATGGGTT
130 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTAC-CTTCGTTTCATGGGTT
*
14694050 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTT
194 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAGTTT
* * * * *
14694115 AAGCCAC-AGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTT-GCCCGGGGCA
259 GAGCCACGA-TGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTT-TTTTCACCCAGGGCA
* * * *
14694178 CCATCGTCGGAGCATCACCAGAGCATCATCAGAGAGCCTAACAGGTGGCATTGGGGGTTCCGACA
322 CCATCGTCGGAGCATCACCGGAGCATCGTCAGAGAGCCTAACA-GCGGCATT-GGGGTTCCGACG
* * *
14694243 ATT-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATAT
385 ATTGGGGGGGCCGAGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
14694307 TGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
450 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
*
14694372 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAA
515 AGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAA
* * **
14694437 TCTTCTCCGCTTTGAGTTTTTAGCTGAATTTTTTACGCATGCCAACAAAAATACAAGGATCACCT
580 TCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACCT
*
14694502 CTACCAAATTTGGGGACAAAACTCTTTCTAAAAACATTTTAAAAAATCCCAAACCGCAAAAAGTT
645 CTACCAAATTTGGGGACAAAACTCTTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAAAG-T
*
14694567 TTC-AAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCGTAGTG
709 TTCAAAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGTG
* * *
14694631 GACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACAACAGAAATATAAAGATGTGCT
774 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAAT-TTAAGATGTGCT
* * *
14694696 TGAGCCCACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTC-TCTGGTC-AGC
838 TGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTTC-GGCCGAGC
* * * * *
14694754 TGAGTGTCCGTACGCTCGTTTCGTGTGTTGACTTAGGCATA-CGGAGTTCATCCCCAGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGCGGAGTTCATCCCCA-TGT---C
* * * * * **
14694818 ATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTT-CCGATAGCAGGATCAACAG
62 -TA---AG--C---CCCAGAC-CAGAT----C--G----AGGGTTGTCGCTAGCAGGACCGGCAG
** * * ** *
14694882 --CAC-GTAGGGGGATAGGGCCGATCCCCGGCTTGCGCATTCTACCTTTTTGGCCAGCTGAGCAC
107 TACACAGTAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
* * *
14694944 CCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAG
172 CCGTACCTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
** *
14695009 TTCATTCCCAGTCTAAGAGTTTGAGCTGCGATGCACATGCTGGCCTC-GTGCATGTGCTGGTGCT
237 TTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCACATGCTGGGCTCAG-GCATGTGCTGGTGCT
*
14695073 GCATTTTTTTCACCCAGGGCACCAT--T----G-----CCGGAGCATCGTCAGAGAGCCTAAC--
301 ACATTTTTTTCACCCAGGGCACCATCGTCGGAGCATCACCGGAGCATCGTCAGAGAGCCTAACAG
* * *
14695125 C-G-A---------CGAC-ATTGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATAGGTGC
366 CGGCATTGGGGTTCCGACGATTGGGGGGGCCGAGGGGGTGTGCGCACATGATATGCGATGGGTGC
*
14695178 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAA
431 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
14695243 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATAGGGTCACTT
496 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTT
* *
14695308 TTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTTGCTGAATTTTTTTTGCATGCCAAC
561 TTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAC
*
14695373 AAAAATACAAGGATCACCTCTATCAAATTTGGGGACAAAACTCACTCTTTCTAAAAATATTTTAA
626 AAAAATACAAGGATCACCTCTACCAAATTTGGGGAC-AAA---ACTCTTTCTAAAAATATTTTAA
*
14695438 AAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGA
687 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGA
*
14695503 AACTTCACATGAAGGCGTAGTGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
752 AACTTCACATGAAGGCGTAGTGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
14695568 AGCAGAAATATTAAGATGTGCTTTAACCCACCTACCACCCGTTTGATCCTCGGCTTGCGCATCCT
817 AGCAGAAAT-TTAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCT
* ** *
14695633 GCCTCTTTGG-TTAGT
881 GCCTCTTCGGCCGAGC
* * * *
14695648 TGAGCGTCCGTACGCTCGTTTCGTGGGTTTACTTAGGCAT-GCGGAGTTCATCCCCAGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGCGGAGTTCATCCCCA-TGT---C
* * * *
14695712 ATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTG-CGGTAGCAGGA---TCAA
62 -T--A-AG------CC----C------CAGACCAGATCGAGGGTTGTCGCTAGCAGGACCGGCAG
* * * * *
14695773 TAGCAC-GTAGGGGGGACCAGGCCGGTGCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
107 TA-CACAGTA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
14695837 GCCCGTACGTTCGTTT-AGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
170 ACCCGTACCTTCGTTTCA-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
* * * * *
14695901 GAGTTCATTACCAGTCTAAGAGTTTGAGCCACGCTGCACATGCTAGGCTCACGCATGTACTGGTG
234 GAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCACATGCTGGGCTCAGGCATGTGCTGGTG
** *
14695966 CTACATTTTTTTCACCCAGGGCACCATCGTCGGAGCATCGTCGGAGCATTGTCAGAGAGCCTAAC
299 CTACATTTTTTTCACCCAGGGCACCATCGTCGGAGCATCACCGGAGCATCGTCAGAGAGCCTAAC
* * *
14696031 CGACGGCATTGGGGTTCCGACGATTGGGGGGGTCGAGGGGGTGTGCGCACATGATATGCCATGGG
364 AG-CGGCATTGGGGTTCCGACGATTGGGGGGGCCGAGGGGGTGTGCGCACATGATATGCGATGGG
*
14696096 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
428 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
14696161 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCTATTAAAGCGTCTGAAATGGGGTCA
493 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACA
* *
14696226 CTTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGC
558 CTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGC
* * *
14696291 CAACAAAAATACAAGGATCACCTCTATCAAATTTGGGGACAAAAATCCTTCTAAAAATATTTTAA
622 CAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAATATTTTAA
* *
14696356 AAAATCCCAAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGTAAACGGGTCATCTTGCCACGA
687 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGA
* *
14696421 AACTTAACATGAAGGCGT-GCTGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCA
752 AACTTCACATGAAGGCGTAG-TGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** ** **
14696485 TGGCAGAAATACATAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCTTATCC
816 CAGCAGAAATTTA-AGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCC
* * * *
14696550 GGCCT-ATCTGGTC-TGC
880 TGCCTCTTC-GGCCGAGC
* * *
14696566 TGAGCGTCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAGTTCATCCCCA-GTCTAAG
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGCGGAGTTCATCCCCATGTCTAAG
14696629 C
66 C
14696630 ATATGGAGTT
Statistics
Matches: 2444, Mismatches: 206, Indels: 225
0.85 0.07 0.08
Matches are distributed among these distances:
889 3 0.00
890 263 0.11
891 17 0.01
892 614 0.25
893 225 0.09
894 304 0.12
895 187 0.08
896 1 0.00
897 1 0.00
898 6 0.00
899 1 0.00
900 2 0.00
901 4 0.00
903 2 0.00
904 3 0.00
905 27 0.01
906 27 0.01
907 1 0.00
908 3 0.00
909 3 0.00
910 3 0.00
911 1 0.00
912 2 0.00
913 1 0.00
914 2 0.00
915 8 0.00
916 183 0.07
917 8 0.00
918 270 0.11
920 4 0.00
921 215 0.09
922 53 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGCGGAGTTCATCCCCATGTCTAAG
CCCCAGACCAGATCGAGGGTTGTCGCTAGCAGGACCGGCAGTACACAGTAGGGGGACCGGGCCGA
TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGTACCTTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAGTTTGA
GCCACGATGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTTTTTTCACCCAGGGCACCAT
CGTCGGAGCATCACCGGAGCATCGTCAGAGAGCCTAACAGCGGCATTGGGGTTCCGACGATTGGG
GGGGCCGAGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
GCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCT
CCACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCA
AATTTGGGGACAAAACTCTTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
ATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGTGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATTTAAGATGTGCTTGAACCCA
CCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTTCGGCCGAGC
Found at i:14694819 original size:26 final size:26
Alignment explanation
Indices: 14694790--14694842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14694780 GTTGACTTAG
14694790 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14694816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14694842 G
1 G
14694843 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14695002 original size:26 final size:26
Alignment explanation
Indices: 14694973--14695025 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14694963 GTTGGCTTAG
*
14694973 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14694999 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14695025 G
1 G
14695026 AGTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14695897 original size:26 final size:26
Alignment explanation
Indices: 14695868--14695920 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14695858 GTTGGCTTAG
*
14695868 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTACCA-GTCTAA
14695894 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
14695920 G
1 G
14695921 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:14696006 original size:11 final size:11
Alignment explanation
Indices: 14695990--14696014 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14695980 CCCAGGGCAC
14695990 CATCGTCGGAG
1 CATCGTCGGAG
14696001 CATCGTCGGAG
1 CATCGTCGGAG
14696012 CAT
1 CAT
14696015 TGTCAGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14696638 original size:26 final size:26
Alignment explanation
Indices: 14696602--14696654 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14696592 GTTGACTTAG
14696602 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* * *
14696628 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
14696654 G
1 G
14696655 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:14696761 original size:918 final size:909
Alignment explanation
Indices: 14693987--14696839 Score: 4195
Period size: 918 Copynumber: 3.1 Consensus size: 909
14693977 ACTGGGTCGA
* *
14693987 TCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCGGCTGAGCGCCCGTACACTT-GTTTCA-TGGGT
1 TCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGCTGAGCGCCCGTAC-GTTCGTTT-AGTGGGT
*
14694049 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTT
63 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAGTT
* * * *
14694114 TAAGCCACAGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTCTTTT-GCCCGGGGCA
128 TGAGCCAC-GTGCACATGCT-GGCTCGCGCATGTGCTGGTGCTGCATTT-TTTTCACCCAGGGCA
* * * *
14694178 CCATCGTCGGAGCATCACCAGAGCATCATCAGAGAGCCTAACAGGTGGCATTGGGGGTTCCGACA
190 CCATCGTCGGAGCAT--CCGGAGCATCGTCAGAGAGCCTAAC-CGCGGCATT-GGGGTTCCGAC-
*
14694243 ATT-GGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATAT
250 ATTGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAT
* *
14694307 TGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
315 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
* *
14694372 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAA
380 AGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGTCACTTTTTTCAAACGGTCACAAAA
* * * **
14694437 TCTTCTCCGCTTTGAGTTTTTAGCTGAATTTTTTACGCATGCCAACAAAAATACAAGGATCACCT
445 TCTTCTCCACTTCGAGTTTTTTGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACCT
* * *
14694502 CTACCAAATTTGGGGACAAAACTCTTTCTAAAAACATTTTAAAAAATCCCAAACCGCAAAAAGTT
510 CTATCAAATTTGGGGACAAAAATCTTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAAAG-T
*
14694567 TTC-AAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCGTAGTG
574 TTCAAAAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGTG
* * *
14694631 GACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACAACAGAAATATAAAGATGTGCT
639 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATA-ATAGATGTGCT
* * * *
14694696 TGAGCCCACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCAGCTGAGTGT
703 TGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCTGCTGAGCGT
*
14694761 CCGTACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
768 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * *
14694826 TTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTCCGATAGCAGGATCAACAGCACGTAGGG
833 TTCATTCCTAGTCTAAGATCAAACTGGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGG
14694891 GGATA--GGGCCG
898 GGA-ACCGGGCCG
* ** * * * *
14694902 ATCCCCGGCTTGCGCATTCTACCTTTTTGGCCAGCTGAGCACCCGTACGTTCGTTTCGTGGGTTG
1 -TCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGTACGTTCGTTTAGTGGGTTG
*
14694967 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGAGTTTG
65 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAGTTTG
** *
14695032 AGCTGCGATGCACATGCTGGCCTCGTGCATGTGCTGGTGCTGCATTTTTTTCACCCAGGGCACCA
130 AGCCACG-TGCACATGCTGG-CTCGCGCATGTGCTGGTGCTGCATTTTTTTCACCCAGGGCACCA
14695097 T--T----G---CCGGAGCATCGTCAGAGAGCCTAA-C-C-G-A---------CGACATTGGGGG
193 TCGTCGGAGCATCCGGAGCATCGTCAGAGAGCCTAACCGCGGCATTGGGGTTCCGACATTGGGGG
*
14695140 GGCCGAGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
258 GGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
14695205 TATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
323 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
*
14695270 TGCCAGTAGCCATTAAAGCGTCTGAAATAGGGTCACTTTTTTCAAACGGTCACAAAATCTTCTCC
388 TGCCAGTAGCCATTAAAGCGTCTGAAATGGGGTCACTTTTTTCAAACGGTCACAAAATCTTCTCC
14695335 ACTTCGAGTTTTTTGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCTATCAAA
453 ACTTCGAGTTTTTTGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCTATCAAA
*
14695400 TTTGGGGACAAAACTCACTCTTTCTAAAAATATTTTAAAAAATCCCAAACCACAAAAAGTTTCAA
518 TTTGGGGACAAAA---A-TCTTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAA
*
14695465 AAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGTGAACCA
579 AAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGTGGACCA
* *
14695530 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATTAAGATGTGCTTTAAC
644 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATAAT-AGATGTGCTTGAAC
* * *
14695595 CCACCTACCACCCGTTTGATCCTCGGCTTGCGCATCCTGCCTCTTTGGT-TAGTTGAGCGTCCGT
708 CCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCT-GCTGAGCGTCCGT
* * *
14695659 ACGCTCGTTTCGTGGGTTTACTTAGGCATGCGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
772 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* ** * *
14695724 TTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAATAGCACGTAGGGGGGA
837 TTCCTAGTCTAAGATCAAACTGGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGGGAA
*
14695789 CCAGGCCGG
902 CCGGGCC-G
* * *
14695798 TGCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGTTCGTTTAGTGGGTTGG
1 TCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGTACGTTCGTTTAGTGGGTTGG
*
14695863 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTACCAGTCTAAGAGTTTGA
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAGTTTGA
* * *
14695928 GCCACGCTGCACATGCTAGGCTCACGCATGTACTGGTGCTACATTTTTTTCACCCAGGGCACCAT
131 GCCACG-TGCACATGCT-GGCTCGCGCATGTGCTGGTGCTGCATTTTTTTCACCCAGGGCACCAT
*
14695993 CGTCGGAGCATCGTCGGAGCATTGTCAGAGAGCCTAACCGACGGCATTGGGGTTCCGACGATTGG
194 CGTCGGAGCATC--CGGAGCATCGTCAGAGAGCCTAACCG-CGGCATTGGGGTTCCGAC-ATTGG
* * ** *
14696058 GGGGGTCGAGGGGGTGTGCGCACATGATATGCCATGGGTGCTGGTGCTTGGCCCTTATATTGGCC
255 GGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
14696123 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
320 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
* * *
14696188 TGCTGCCAGTGGCTATTAAAGCGTCTGAAATGGGGTCACTTTTTTCAAACGATCACAAAATCTTC
385 TGCTGCCAGTAGCCATTAAAGCGTCTGAAATGGGGTCACTTTTTTCAAACGGTCACAAAATCTTC
14696253 TCCACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTAT
450 TCCACTTCGAGTTTTTTGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACCTCTAT
* *
14696318 CAAATTTGGGGACAAAAATCCTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAATGTTTCAA
514 CAAATTTGGGGACAAAAATCTTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAA
* *
14696383 AAATCGTGAAAAATAGTAAACGGGTCATCTTGCCACGAAACTTAACATGAAGGCGT-GCTGGACC
579 AAATCGTGAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAG-TGGACC
* **
14696447 ATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATACATAGATGTGCTTGAA
643 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATA-ATAGATGTGCTTGAA
** * * *
14696512 CCCACCTACCACCCGTTCGATCCTCGGCTTGCTTATCCGGCCTATCTGGTCTGCTGAGCGTCCGA
707 CCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCTGCTGAGCGTCCGT
* *
14696577 ACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
772 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* *
14696642 TTCCTAGTCTAAGATCAAACTGGATCGAGGGTTGCGGTAGCAGGATCAACAGCACATAGGGGGAA
837 TTCCTAGTCTAAGATCAAACTGGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGGGAA
14696707 CCGGGCCAG
902 CCGGGCC-G
* * * * * *
14696716 TCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGTGCCCGTATGTTCGTTTCGTGGGTTGG
1 TCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGTACGTTCGTTTAGTGGGTTGG
* * * *
14696781 CTTACGTATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGA
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
14696840 TCAGACCGGA
Statistics
Matches: 1745, Mismatches: 144, Indels: 94
0.88 0.07 0.05
Matches are distributed among these distances:
889 3 0.00
890 267 0.15
893 5 0.00
894 334 0.19
895 177 0.10
896 3 0.00
897 1 0.00
900 1 0.00
901 2 0.00
904 1 0.00
905 22 0.01
906 22 0.01
907 1 0.00
909 1 0.00
910 2 0.00
911 1 0.00
914 1 0.00
915 9 0.01
916 163 0.09
917 1 0.00
918 451 0.26
919 3 0.00
920 4 0.00
921 219 0.13
922 51 0.03
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (909 bp):
TCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGTACGTTCGTTTAGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAGTTTGA
GCCACGTGCACATGCTGGCTCGCGCATGTGCTGGTGCTGCATTTTTTTCACCCAGGGCACCATCG
TCGGAGCATCCGGAGCATCGTCAGAGAGCCTAACCGCGGCATTGGGGTTCCGACATTGGGGGGGC
CGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
CAGTAGCCATTAAAGCGTCTGAAATGGGGTCACTTTTTTCAAACGGTCACAAAATCTTCTCCACT
TCGAGTTTTTTGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACCTCTATCAAATTT
GGGGACAAAAATCTTTCTAAAAATATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGTAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCGTAGTGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATAATAGATGTGCTTGAACCCACCTAC
CACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCTGCTGAGCGTCCGTACGCTCGTT
TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTC
TAAGATCAAACTGGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGGGAACCGGGCCG
Found at i:14697946 original size:50 final size:50
Alignment explanation
Indices: 14697871--14697971 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
14697861 CGCCCGTTTC
* * *
14697871 ATGGGTTAGTTTATCCATAGGGAGTTGATTCCATGTCTAAACCCCAGCCG
1 ATGGGTTAGCTTAGCCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
* *
14697921 ATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
1 ATGGGTTAGCTTAGCCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
14697971 A
1 A
14697972 ACCGAGGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.28
Consensus pattern (50 bp):
ATGGGTTAGCTTAGCCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
Found at i:14698454 original size:26 final size:26
Alignment explanation
Indices: 14698406--14698456 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14698396 GTTGACTTAG
*
14698406 GCATACGAAGTTCATCTCTAGTCTAA
1 GCATACGAAGTTCATCTCCAGTCTAA
*
14698432 GCATACGGAGTTCAT-TCCCAGTCTA
1 GCATACGAAGTTCATCT-CCAGTCTA
14698457 GGATCAGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCTCCAGTCTAA
Found at i:14699309 original size:159 final size:159
Alignment explanation
Indices: 14699019--14699312 Score: 401
Period size: 159 Copynumber: 1.8 Consensus size: 159
14699009 GCACACAATT
* ** * ** ** *
14699019 GGGGACTGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCTCACACGCCT
1 GGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCT
* * *
14699084 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGT
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAAGGT
14699149 TGTGGCAGTAGGACCGGTAGCACTCAAAG
131 TGTGGCAGTAGGACCGGTAGCACTCAAAG
* * *
14699178 GGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTTCGGCCGACTGAGCACCCGCACG-CT
1 GGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCT
* * * *
14699242 CGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCCCTAGCCGGATCGAAGG
66 -GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAAGG
14699307 TTGTGG
130 TTGTGG
14699313 TAGCAAGACC
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
158 2 0.02
159 113 0.98
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTGAGCACCCACACGCCT
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAAGGT
TGTGGCAGTAGGACCGGTAGCACTCAAAG
Found at i:14699679 original size:527 final size:516
Alignment explanation
Indices: 14698124--14700329 Score: 1788
Period size: 514 Copynumber: 4.2 Consensus size: 516
14698114 GCAGCAGGAT
* ** * ** * * * * *
14698124 TGGCAGCATGCAG-GGGGGACCAGGCCGATCCCTGGCTTGCATATTCTGTCTTTTCGGCCTACTG
1 TGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGACTC
* * *
14698188 AGCGCCCGCACGCTCG-TTCTGTGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCCC
66 AGCGCCCGAACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * *
14698252 CAACCGGATCGAGGGTTGTGGTAGTAAGATCGACAACGGGATCGGCATCATGCAGAGGGGGACCG
130 TAGCCGGATCGAGGGTTGTGGTAG-AAGA-CG-C-A-GGGATTGGCAGCATGCAGAGGGGGACCG
* *
14698317 GGTTGATCCCCGGCTTGCACATTATACCTCTCCAACCGGTCTCTCTGGCCGGTTGAGCGCCCGCA
190 GGCTGAT-CCCGGCTTGCACATTATACCTCTCTAA--GGT-TCTCTGGCCGGTTGAGCGCCCGCA
* * *
14698382 CGCTCGTTTCCTGGGTTGACTTAGGCATACGAAGTTCATCTCTAGTCTAAGCATACGGAGTTCAT
251 CGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCTCTAGTCTAAGCATAAGGAGTTCAT
* **
14698447 TCCCAGTCTAGGATCAGACCGGACCGAGTGTTACGATAGCAGGATCAACAGCACACA-GGGGGAC
316 TCCCAGTCTAGGATCAGACCGGACCGAGCGTTACGATAGCAGGATCAACAGCACGTAGGGGGGA-
* * * ** *
14698511 CGGGCTGATCCCCGACTTATGCATTCTACCTCTCCAGCCAGCTAAGCACCCGCACGTTCGTTTCG
380 CGGGCTGATCCCTGACTTATGCATTCTGCCTCTCCAGCCAGCTGAGTGCCCGCACGTCCGTTTCG
*
14698576 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
445 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCAGACCGAGGGTTGTGGC
14698641 AGTGGGAC
509 AGTGGGAC
* * * *
14698649 TGGCAGCATGCAGAGGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTC
1 TGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGACT-
* * * *
14698714 CA-CGCCCGAACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATTCC-TAGTATAAG-A
65 CAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCC
* * * * *
14698776 TTAGACCGGATCGAGGGCTGCGGT---A-A--CA-GGATTGACAGCATGCA-AGGGGGACCAGGC
129 CTAG-CCGGATCGAGGGTTGTGGTAGAAGACGCAGGGATTGGCAGCATGCAGAGGGGGACCGGGC
* * * * * *
14698833 TGGTCCCTGGCTTACGCATTCTA--TCTCTAAGG---TC--GAC---TGAGCCCCCGCACGCTCA
193 TGATCCC-GGCTTGCACATTATACCTCTCTAAGGTTCTCTGGCCGGTTGAGCGCCCGCACGCTCA
* * * *
14698888 TTTCATGGGTT-AGCTTAGGCATACGGAGTTC-TTTCCATGTCTAAGCATAAGAAGTTCATTCCC
257 TTTCATGGGTTGA-CTTAGGCATACGAAGTTCATCTCTA-GTCTAAGCATAAGGAGTTCATTCCC
* * * * *
14698951 AGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGACCAGTAGCAGCATCGATAGCACACA
320 AGTCTAGGATCAGACCGGACCGAGCGTTACGATAGCAGGATCA--A-CAGCA-CG-TAG------
* * * * * * *
14699016 ATTGGGGACTGGG-TCGATCCCTGGCTTACGCATTCTGCCTCTCC-GACCGGTTGAGTGCTCACA
374 --GGGGGAC-GGGCT-GATCCCTGACTTATGCATTCTGCCTCTCCAG-CCAGCTGAGTGCCCGCA
*
14699079 CG-CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACC
434 CGTCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGCCAGACC
*
14699143 GAGGGTTGTGGCAGTAGGAC
497 GAGGGTTGTGGCAGTGGGAC
* * * * * *
14699163 CGGTAGCACT-CAAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTTCGGCCGACT
1 TGGCAGCA-TGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGACT
* * * * * *
14699227 GAGCACCCGCACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCCC
65 CAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * *
14699292 TAGCCGGATCGAAGGTTGTGGTAGCAAGACCGGCAGTGGGATTGGCAGCACGTAGAGGGGGACCG
130 TAGCCGGATCGAGGGTTGTGGTAG-AAGA-C-GCA--GGGATTGGCAGCATGCAGAGGGGGACCG
* * * *
14699357 GGCTGATCCTCGACTTGCACATTATACCTCTCTGATTGGCTTCTCTGGCCGGTTGAGCGCTCGTA
190 GGCTGATCC-CGGCTTGCACATTATACCTCTCT-A-AGG-TTCTCTGGCCGGTTGAGCGCCCGCA
* ** *
14699422 CGCTCATTTTATGGGTTGACTTAGGCATAAAAAGTTCATCTCTAGTCTAAGCATATGGAGTTCAT
251 CGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCTCTAGTCTAAGCATAAGGAGTTCAT
* * *
14699487 TCCCAGTCTAGGATCAGATCAGACCGAGCGTTACGGTAGCAGGATCAACAGCACGTAGGGGGGAT
316 TCCCAGTCTAGGATCAGACCGGACCGAGCGTTACGATAGCAGGATCAACAGCACGTAGGGGGGA-
* *
14699552 CGGGCTGATCCCTGACTTTTGCATTCTGCCTCTCCAGCCAGCTGAGTGCCCGTACGTCCGTTTCG
380 CGGGCTGATCCCTGACTTATGCATTCTGCCTCTCCAGCCAGCTGAGTGCCCGCACGTCCGTTTCG
* *
14699617 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCAGATCGAAGGTTGTGGC
445 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCAGACCGAGGGTTGTGGC
14699682 AGTGGGAC
509 AGTGGGAC
* * ** * * *
14699690 TGACAGCATGCAGAGAGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCGACTGGCTC
1 TGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGACTC
* * * * * * **
14699755 CGTGCCCGAACGCTCGTTTCGCGGGTTGACTTTGGCACACGGAGTTCATTCCCA-GCCTAAGATC
66 AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * ** * * *
14699819 -GGACCAGACCGAAAG-T-T-GT-G-ACA-GCA-GGATTGACAGCATGCA-AGGGGGACCAGGCT
130 TAG-CCGGATCGAGGGTTGTGGTAGAAGACGCAGGGATTGGCAGCATGCAGAGGGGGACCGGGCT
* * * * * * * *
14699875 GGTCCCCGACTTACGCATTCTA-C-CTCTAAGG--C-C-AG-C---TAAGCGCCCGCACGCTCGT
194 GAT-CCCGGCTTGCACATTATACCTCTCTAAGGTTCTCTGGCCGGTTGAGCGCCCGCACGCTCAT
* * * * *
14699930 TTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAAGTCTAAGCATACGAAGTTCATTCCCAG
258 TTCATGGGTTGACTTAGGCATACGAAGTTCATCT-CTAGTCTAAGCATAAGGAGTTCATTCCCAG
* * * * * * *
14699994 TCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAAGACCAGCAACAGGATTGGTAGCACGTAGT
322 TCTAGGATCAGACCGGACCGAGCGTTACGATAGC-AG----G-ATCA--A----CAGCACGTAG-
* * ** * * * * *
14700059 TGGGGACCGGG-TCGAT-CCTCGGCTTGCGCATTCTGCCTCTCC-GATCGGTTGAGTGTCCACAC
374 GGGGGA-CGGGCT-GATCCCT-GACTTATGCATTCTGCCTCTCCAG-CCAGCTGAGTGCCCGCAC
* ** * * * *
14700121 G-CCTGTTTCATGGGTTGGCTTAGGCATAGACAGTTCATTCCATGTCCAAACCCCATCCAAACCG
435 GTCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT-CTAAGCCCAGCCAGACCG
14700185 AGGGTTGTGGCAGTGGGAC
498 AGGGTTGTGGCAGTGGGAC
** * * ** * * * * * * *
14700204 TGGCAGCACACAAAGGGGGATCGGTTCGATCCCCAGCTTGCGCATTCTACCTCTTCGACTGGCTG
1 TGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGACTC
* * * * *
14700269 AGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCGTTCCATGTCTAAGC
66 AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14700330 ATACGGAGTT
Statistics
Matches: 1352, Mismatches: 240, Indels: 190
0.76 0.13 0.11
Matches are distributed among these distances:
499 5 0.00
500 105 0.08
501 97 0.07
502 3 0.00
503 7 0.01
504 2 0.00
505 4 0.00
506 2 0.00
507 4 0.00
509 3 0.00
510 2 0.00
511 7 0.01
512 10 0.01
513 66 0.05
514 466 0.34
515 23 0.02
516 1 0.00
517 1 0.00
518 4 0.00
519 1 0.00
521 3 0.00
522 1 0.00
523 3 0.00
524 2 0.00
525 16 0.01
526 120 0.09
527 256 0.19
528 12 0.01
529 5 0.00
530 1 0.00
531 2 0.00
535 5 0.00
536 2 0.00
537 7 0.01
538 1 0.00
540 98 0.07
541 5 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (516 bp):
TGGCAGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGACTC
AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCT
AGCCGGATCGAGGGTTGTGGTAGAAGACGCAGGGATTGGCAGCATGCAGAGGGGGACCGGGCTGA
TCCCGGCTTGCACATTATACCTCTCTAAGGTTCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTC
ATGGGTTGACTTAGGCATACGAAGTTCATCTCTAGTCTAAGCATAAGGAGTTCATTCCCAGTCTA
GGATCAGACCGGACCGAGCGTTACGATAGCAGGATCAACAGCACGTAGGGGGGACGGGCTGATCC
CTGACTTATGCATTCTGCCTCTCCAGCCAGCTGAGTGCCCGCACGTCCGTTTCGTGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCAGACCGAGGGTTGTGGCAGTGGGAC
Found at i:14699955 original size:158 final size:158
Alignment explanation
Indices: 14699472--14699973 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 158
14699462 TCTAGTCTAA
* * * ** ** * **
14699472 GCATATGGAGTTCATTCCCAGTCTAGGATCAGATCAGACCGAGCGTTACGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAAGTTGTGGCAGCAGGATTGACA
* * * * ** * *
14699537 GCACGTAGGGGGGATCGGGCTGATCCCTGACTTTTGCATTCTGCCTCTCCA-GCCAGCTGAGTGC
66 GCATGCAAGGGGGACCGGGCTGATCCCTGACTTACGCATTCTGCCTCT-AAGGCCAGCTAAGTGC
*
14699601 CCGTACG-TCCGTTTCGTGGGTTGGCTTAG
130 CCGAACGCT-CGTTTCGTGGGTTGGCTTAG
* * * * ** *
14699630 GCATAGGGAGTTCATT-CCATGTCTAAGACCCAG-CCAGATCGAAGGTTGTGGCAGTGGGACTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGACCAGACCGAAAGTTGTGGCAGCAGGATTGA
* * * * ** * ** **
14699693 CAGCATGCAGAGAGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCGACTGGCTCCGT
64 CAGCATGCA-AGGGGGACCGGGCTGATCCCTGACTTACGCATTCTGCCTCTAAGGCCAGCTAAGT
* * *
14699758 GCCCGAACGCTCGTTTCGCGGGTTGACTTTG
128 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
14699789 GCACACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAAAGTTGTGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAAGTTGTGGCAGCAGGATTGACA
* * * * *
14699854 GCATGCAAGGGGGACCAGGCTGGTCCCCGACTTACGCATTCTACCTCTAAGGCCAGCTAAGCGCC
66 GCATGCAAGGGGGACCGGGCTGATCCCTGACTTACGCATTCTGCCTCTAAGGCCAGCTAAGTGCC
* *
14699919 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGAACGCTCGTTTCGTGGGTTGGCTTAG
*
14699947 GCATACGGAGTTCATTCCAAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
14699974 CATACGAAGT
Statistics
Matches: 266, Mismatches: 71, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 138 0.52
159 121 0.45
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAAGTTGTGGCAGCAGGATTGACA
GCATGCAAGGGGGACCGGGCTGATCCCTGACTTACGCATTCTGCCTCTAAGGCCAGCTAAGTGCC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14699977 original size:26 final size:26
Alignment explanation
Indices: 14699947--14699999 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14699937 GTTGGCTTAG
*
14699947 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
14699973 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
14699999 G
1 G
14700000 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:14700338 original size:26 final size:25
Alignment explanation
Indices: 14700303--14700353 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
14700293 GTTGGCTTAG
*
14700303 GCATAGGAGTTCGTTCCATGTCTAA
1 GCATAGGAGTTCATTCCATGTCTAA
14700328 GCATACGGAGTTCATTCCATGTCTAA
1 GCATA-GGAGTTCATTCCATGTCTAA
14700354 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCATGTCTAA
Found at i:14701441 original size:159 final size:158
Alignment explanation
Indices: 14701259--14701544 Score: 385
Period size: 158 Copynumber: 1.8 Consensus size: 158
14701249 TCGAATTGAG
* * * * *
14701259 GGTTGTGGTAGTGGGACCAACAGCACACAGAGGGGGA-TCAGGCCGATCTCCATCTTTCGCATTA
1 GGTTGTGATAGTAGGACCAACAGCACACAG-GGGGGACT-AGGCCGATCCCCAGCTTACGCATTA
* * *
14701323 TGCCTCTCCGGTCGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTA
64 TGCCTCTCCGATCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTA
14701388 ATTCCTAGTCTAAGATCAGACCGGACCGAC
129 ATTCCTAGTCTAAGATCAGACCGGACCGAC
* * * * * * *
14701418 GGTTGTGATAGTAGGATCGACAGCACGCAGGGGGGACTAGGCTGGTCCCCGGCTTACGCATTCTG
1 GGTTGTGATAGTAGGACCAACAGCACACAGGGGGGACTAGGCCGATCCCCAGCTTACGCATTATG
* * *
14701483 CCTCTCCGATCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
66 CCTCTCCGATCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTT
14701545 CGTTCCATGT
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 82 0.76
159 26 0.24
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GGTTGTGATAGTAGGACCAACAGCACACAGGGGGGACTAGGCCGATCCCCAGCTTACGCATTATG
CCTCTCCGATCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTAAT
TCCTAGTCTAAGATCAGACCGGACCGAC
Found at i:14702038 original size:26 final size:26
Alignment explanation
Indices: 14702002--14702054 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14701992 GTTGACTTAG
14702002 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14702028 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14702054 G
1 G
14702055 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14702853 original size:26 final size:26
Alignment explanation
Indices: 14702823--14702874 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14702813 GTTGACTTAG
*
14702823 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14702849 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14702875 TATTGAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14703044 original size:26 final size:26
Alignment explanation
Indices: 14703008--14703060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14702998 GTTGGCTTAG
* *
14703008 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14703034 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14703060 G
1 G
14703061 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:14703386 original size:158 final size:157
Alignment explanation
Indices: 14703096--14703706 Score: 611
Period size: 158 Copynumber: 3.9 Consensus size: 157
14703086 AGTAGGACCA
* * * * **
14703096 GCAGCAAGATCGACAGCATGTAGGGGCAGACCGAGTCGATCCTCAACTTGCGCATTCTACCTCTC
1 GCAGCAGGATCGACAGCATGCAGGGG-GGACCGAGTCGATCCCCGGCTTGCGCATTCTACCTCTC
* * * * * * *
14703161 CGACTGGCTGAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATG
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
*
14703226 TCTAAGATCGGACCAGACTGAGGGTTACG
130 TCTAAGATCGAACCAGACTGAGGGTTA-G
* * * *
14703255 ACAGCAGGATCGGCAGCATGTAGGGGGGA-CGAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCATGCAGGGGGGACCGA-GTCGATCCCCGGCTTGCGCATTCTACCTCTC
* * * * * *
14703319 CGACCGACTGCGCGGCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATG
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
** * * *
14703384 TCTAAGCCCTAGCCAGACCGAGGGTTGAG
130 TCTAAGATCGAACCAGACTGAGGGTT-AG
* * * * * * * * *
14703413 GCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCTATCCCCGGCTTGTGCATTATGCCTCTC
1 GCAGCAGGATCGACAGCATGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTACCTCTC
* * * * * *
14703478 CGGCCGGCTTAGCACCCGTC-CGCTCATATCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
65 CGACCGACTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCA
* * *
14703542 -ATCTAAGATCGAACCGGACTGAGGGTTGGG
128 TGTCTAAGATCGAACCAGACTGAGGGTT-AG
* * *
14703572 GCAGGAGGATCAACAGCATGCAGGGGGGACC-AGGTC-AGTCCCCGGCTTGCGCATTTTACCTCT
1 GCAGCAGGATCGACAGCATGCAGGGGGGACCGA-GTCGA-TCCCCGGCTTGCGCATTCTACCTCT
* * * *
14703635 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
64 CCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT
14703700 GTCTAAG
129 GTCTAAG
14703707 CATAAGTCAG
Statistics
Matches: 366, Mismatches: 76, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
157 9 0.02
158 207 0.57
159 143 0.39
160 7 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCAGCAGGATCGACAGCATGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTACCTCTCC
GACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGT
CTAAGATCGAACCAGACTGAGGGTTAG
Found at i:14703892 original size:26 final size:26
Alignment explanation
Indices: 14703863--14703915 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14703853 GTTAACTTAG
*
14703863 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
14703889 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14703915 G
1 G
14703916 ATCGAAATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14704205 original size:159 final size:157
Alignment explanation
Indices: 14704027--14704427 Score: 396
Period size: 157 Copynumber: 2.5 Consensus size: 157
14704017 CCCGCATGCC
* * * *
14704027 CATTTCGTGGGTTGGCTTAGGCATTCGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGGG
* * * * *
14704092 TTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATCGGGCTGGTCC-CTGGCTTGCACATTATG
66 TTGTGGCAGCAGGACCGACAACACGCA-A-GGGGATCGGGCCGATCCTC-GGCTTGCACATTATG
*
14704156 CCTCTCC-GACCAGCTCAGCACCTGAACGAT
128 CCTCTCCAG-CCAGCTCAGCACCCGAACGAT
** ** **
14704186 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAAATCAGACTAAGG
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAGCCAGACCGAGG
** * * * * *
14704250 GTTACGGTAGCAGGATCGACAACACGTAAGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCC
65 GTTGTGGCAGCAGGACCGACAACACGCAAGGGGATCGGGCCGATCCTCGGCTTGCACATTATGCC
* * * * * * *
14704315 TCTCCAGTCGGTTGAGCGCCCGCACGCT
130 TCTCCAGCCAGCTCAGCACCCGAACGAT
* ** * *
14704343 CGTTTCATGGGTTAGA-TTAGGCATACAAAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGG
1 CATTTCATGGGTT-GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGG
*
14704407 GTTGTGGCAGTAGGACCGACA
65 GTTGTGGCAGCAGGACCGACA
14704428 GTGGGATCGG
Statistics
Matches: 191, Mismatches: 46, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.02
157 110 0.58
158 5 0.03
159 70 0.37
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGGG
TTGTGGCAGCAGGACCGACAACACGCAAGGGGATCGGGCCGATCCTCGGCTTGCACATTATGCCT
CTCCAGCCAGCTCAGCACCCGAACGAT
Found at i:14704216 original size:684 final size:670
Alignment explanation
Indices: 14703292--14704892 Score: 1810
Period size: 684 Copynumber: 2.4 Consensus size: 670
14703282 GACGAGGTCG
* * * *
14703292 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGCGCGGCCGCACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
* * *
14703357 GCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGAGGCAGCGGGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA
* * * * *
14703422 CCGACAGCACGCAGAGGGGGATCGAGCCTATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGCT
131 CCGACAGCACGCAGAGGGGGATCG-GGCTGTCCCTGGCTTGCGCATTATGCCTCTCCGACC-GCT
* ** * *
14703487 TAGCACCCGTCCGCTCATATCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
194 CAGCACCCGAACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
* * * ** * * * * *
14703552 GAACCGGACTGAGGGTTGGGGCAGGAGGATCAACAGCATGCAGGGGGGACCAGGTCAG-TCCCCG
259 AAACCAGACTAAGGGTTACGGCAGCAGGATCAACAACACGCA-AGGGGACC-GGGCAGATCCCCG
* ** * * *
14703616 GCTTGCGCATTTTACCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
322 GCTTGCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTAGATTAGG
* * *
14703681 CATACGAAGTTCATTCCATGTCTAAG-CATAAGTCAGACCGAGTGTTGTGGCAGCAGGACC-AGC
387 CATACAAAGTTCATTCCATGTCTAAGCCAT-AGCCAGACCGAGGGTTGTGGCAGCAGGACCGA-C
* *
14703744 AGCGGGATCGACAGCACGTAG-GGGGGATCGGGCTGATCCCTGACTTACGCATTTTGCCTCTCTG
450 AGCGGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTACGCATTATGCCTCTCTG
* * *
14703808 ACCAGCCACTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT-AACTTAGGCATACAGA
515 ----G------C--T-GGCTGAGCACCCGCACGCTCGTTTCATGAGTTGAA-TTACGCATACAGA
** * * *
14703872 GTTTATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAAATGAACCGAGGG-T
566 GTCCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAG-AACGAACCGAGGGTT
* *
14703935 TGCGACAGCAGGATCGACAGCACGCAAGAGGGATCG-GACA
630 TGCGACAGCAGGATCGACAGCACCCAAGAGGGACCGAGACA
** * * * * *
14703975 GATCTTCGGCTTGCGCATTCTACCTCTCTGACTGGCTGAGTGCCCGCATGCCCATTTCGTGGGTT
1 -ATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
**
14704040 GGCTTAGGCATTCGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGG
65 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGG
* *
14704105 ACCGGCAGCACGCAGAGGGGGATCGGGCTGGTCCCTGGCTTGCACATTATGCCTCTCCGACCAGC
130 ACCGACAGCACGCAGAGGGGGATCGGGCT-GTCCCTGGCTTGCGCATTATGCCTCTCCGACC-GC
* * *
14704170 TCAGCACCTGAACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
193 TCAGCACCCGAACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
* * * * * * *
14704235 CAAATCAGACTAAGGGTTACGGTAGCAGGATCGACAACACGTAAGGGGATCGGGCCGATCCTCGG
258 CAAACCAGACTAAGGGTTACGGCAGCAGGATCAACAACACGCAAGGGGACCGGGCAGATCCCCGG
* * **
14704300 CTTGCGCATTCTGCCTCTCCAGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTAGATTAGGC
323 CTTGCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTAGATTAGGC
* * * *
14704365 ATACAAAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTAGGACCGACAGT
388 ATACAAAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGC
** * * ***
14704430 GGGATCGGTAGCATGTAGAGGGGGATCGGGCTGATCCCCGGCTTGTTCATTATGCCTCTCTGGCT
453 GGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTACGCATTATGCCTCTCTGGCT
* *
14704495 GGCTGAGCGCCCGTACGCTCGTTTCATGAGTTGAATTACGCATACAGAGTCCATCCCCAGTCTAA
518 GGCTGAGCACCCGCACGCTCGTTTCATGAGTTGAATTACGCATACAGAGTCCATCCCCAGTCTAA
* * * * ** **
14704560 GCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGATCGAGGGTTTGTGGTAGCAGGATCGGT
583 GCATACGGAGTTCATTCCCAGCCTAAGATCAGAACGAACCGAGGGTTTGCGACAGCAGGATCGAC
* *
14704625 AGCACCCATGAGGGACCGAGCCA
648 AGCACCCAAGAGGGACCGAGACA
* *
14704648 ATCCCCAGCTTGCGCATTCTGCCTCTCCGA-TCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
* * *
14704712 GGCTT---TATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTCGCAGCAGG
65 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGG
* * * * * **
14704774 ATCGACAGCACGCAG-GGGGGA-CGGGGCCAGTCCCTGGCTTACGTATTCTTTCTCTCCGACCGA
130 ACCGACAGCACGCAGAGGGGGATC-GGG-CTGTCCCTGGCTTGCGCATTATGCCTCTCCGACCG-
* * * * * * *
14704837 CTGAGCGCCCGCACGTTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCA-TCCCA
192 CTCAGCACCCGAACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
14704893 TGTCTAAGCA
Statistics
Matches: 775, Mismatches: 129, Indels: 43
0.82 0.14 0.05
Matches are distributed among these distances:
667 7 0.01
668 77 0.10
669 66 0.09
671 93 0.12
672 91 0.12
673 3 0.00
674 1 0.00
680 1 0.00
682 4 0.01
683 138 0.18
684 294 0.38
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (670 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA
CCGACAGCACGCAGAGGGGGATCGGGCTGTCCCTGGCTTGCGCATTATGCCTCTCCGACCGCTCA
GCACCCGAACGATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAA
ACCAGACTAAGGGTTACGGCAGCAGGATCAACAACACGCAAGGGGACCGGGCAGATCCCCGGCTT
GCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTAGATTAGGCATA
CAAAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGG
ATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTACGCATTATGCCTCTCTGGCTGGC
TGAGCACCCGCACGCTCGTTTCATGAGTTGAATTACGCATACAGAGTCCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGCCTAAGATCAGAACGAACCGAGGGTTTGCGACAGCAGGATCGACAGC
ACCCAAGAGGGACCGAGACA
Found at i:14704408 original size:157 final size:155
Alignment explanation
Indices: 14703926--14704428 Score: 470
Period size: 159 Copynumber: 3.2 Consensus size: 155
14703916 ATCGAAATGA
* * *
14703926 ACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGAGGGATCGGACAGATCTTCGGCTTGCGC
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAG-GGGATCGGGCAGATCCTCGGCTTGCGC
* * * * * * * *
14703991 ATTCTACCTCTCTGACTGGCTGAGTGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATTCGGA
65 ATTCTGCCTCTCCGAC-GGCTGAGCGCCCGCACGCTCATTTCATGGGTT-GATTAGGCATACGGA
*
14704056 GTTCATTCCATGTCTAAGCCCCAGCCAG
128 GTTCATTCCATGTCTAAGCCCAAGCCAG
* * * * * *
14704084 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATCGGGCTGGTCC-CTGGCTTGC
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-A-GGGGATCGGGCAGATCCTC-GGCTTGC
* * * * * * * *
14704148 ACATTATGCCTCTCCGACCAGCTCAGCACCTGAACGATCATTTCATGGGTTGACTTAGGCATACG
63 GCATTCTGCCTCTCCGA-CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA-TTAGGCATACG
** **
14704213 GAGTTCATTCCCA-GTCTAAGATCAAATCAG
126 GAGTTCATT-CCATGTCTAAGCCCAAGCCAG
** * * * * *
14704243 ACTAAGGGTTACGGTAGCAGGATCGACAACACGTAAGGGGATCGGGCCGATCCTCGGCTTGCGCA
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGATCGGGCAGATCCTCGGCTTGCGCA
* * * **
14704308 TTCTGCCTCTCCAGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTAGATTAGGCATACAAAG
66 TTCTGCCTCTCC-GACGGCTGAGCGCCCGCACGCTCATTTCATGGGTT-GATTAGGCATACGGAG
* *
14704373 TTCATTCCATGTCTAAGCCCTAGCCGG
129 TTCATTCCATGTCTAAGCCCAAGCCAG
* * *
14704400 ACCGAGGGTTGTGGCAGTAGGACCGACAG
1 ACCGAGGGTTGCGGCAGCAGGATCGACAG
14704429 TGGGATCGGT
Statistics
Matches: 266, Mismatches: 69, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 110 0.41
158 37 0.14
159 111 0.42
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (155 bp):
ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGATCGGGCAGATCCTCGGCTTGCGCA
TTCTGCCTCTCCGACGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGATTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCAAGCCAG
Found at i:14704570 original size:26 final size:26
Alignment explanation
Indices: 14704534--14704586 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14704524 GTTGAATTAC
*
14704534 GCATACAGAGTCCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGCCTAA
* * *
14704560 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTCCATCCCCAGCCTAA
14704586 G
1 G
14704587 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGCCTAA
Found at i:14704910 original size:26 final size:26
Alignment explanation
Indices: 14704874--14704952 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
14704864 GTTGGCTTAG
14704874 GCATACGGAGTTCATCCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
14704900 GCATACGGAGTTCATCCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
14704926 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCA-TCCCATGTCTAA
14704952 G
1 G
14704953 ATCGGACTGG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 47 0.90
27 5 0.10
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:14705126 original size:26 final size:26
Alignment explanation
Indices: 14705096--14705148 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14705086 GTTGACTTAG
* *
14705096 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14705122 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14705148 G
1 G
14705149 ACCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14705625 original size:26 final size:26
Alignment explanation
Indices: 14705595--14705649 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
14705585 GGGTTGGCTC
14705595 AAGCATACAGAGTTCATTCC-ATGTCT
1 AAGCATACAGAGTTCATTCCTA-GTCT
*
14705621 AAGCATACGGAGTTCATTCCTAGTCT
1 AAGCATACAGAGTTCATTCCTAGTCT
14705647 AAG
1 AAG
14705650 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
AAGCATACAGAGTTCATTCCTAGTCT
Found at i:14705794 original size:184 final size:184
Alignment explanation
Indices: 14705439--14705992 Score: 628
Period size: 184 Copynumber: 3.0 Consensus size: 184
14705429 GTTGACTTAG
* * * * * *
14705439 GCATACAGAGTTTATTCCCAATCTAAGATCGGACTGGACCGAGGGTTACAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCAGTAGCAGGATCGACA
* * * * * *
14705504 GCACGTAGGGGGGATCAGGTCGGTCCCCGACTTGTGCATTCTGCCTCTCCGGA-TGGCTAAGCGC
66 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCC-GACCGACTGAGCGC
* ** * * * **
14705568 CTGCGTGCTTGTTTCATGGGTTGGCTCAAGCATACAGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCTAA
** * *
14705623 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGATCGAGGGTTGCAGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCAGTAGCAGGATCGACA
* * * * *
14705688 GCACGTAGGGGGGATCGGGTAGATGCCCGGCTTGTGCATTTTGCCTCTCCGACCAACTGAGCACC
66 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
* * * * * *
14705753 CGCACACTCATTTCGTGGATTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATATGGAGTTCAT-TCCATGTCTAA
* * * *
14705807 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATTGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCAGTAGCAGGATCGACA
* * * * * * *
14705872 GCACGAAAGAGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
* *
14705937 CGCACGCCCGTTTCGTGGGTTGGCTTACGCAT-TGGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATAT-GGAGTTCATTCCATGTCTAA
14705991 GC
1 GC
14705993 CTCAGTCGAA
Statistics
Matches: 304, Mismatches: 62, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
183 6 0.02
184 295 0.97
185 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCAGTAGCAGGATCGACA
GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCTAA
Found at i:14705817 original size:26 final size:26
Alignment explanation
Indices: 14705781--14705833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14705771 ATTGACTTAG
*
14705781 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14705807 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14705833 G
1 G
14705834 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14706109 original size:26 final size:26
Alignment explanation
Indices: 14706072--14706124 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14706062 GTTGGCTTAC
14706072 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
14706098 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14706124 G
1 G
14706125 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14706959 original size:26 final size:26
Alignment explanation
Indices: 14706908--14706960 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14706898 GTTGGCTTAG
*
14706908 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
* *
14706934 GCATATGGAGTTCTTTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
14706960 G
1 G
14706961 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:14707334 original size:354 final size:354
Alignment explanation
Indices: 14706675--14707334 Score: 806
Period size: 354 Copynumber: 1.9 Consensus size: 354
14706665 GGGGGACTGG
* * *
14706675 GCCGATCCCCAGCTTGTGCATTATGTCTCTCCGACCGACTCAGTGCCCGAACGCTCGTTTCGTGG
1 GCCGATCCCCAGCTTATGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCGTTTCGTGG
* * * **
14706740 GTTAACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGGACCAAGGGTTATGGTAGT
66 ATTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGACAGT
** * * * * *
14706805 AGGATCGACAACATGCAGGGGAGATCGGGCCGGTCCTTGGCTTGCGCATTCTGCCTCTTCAACTG
131 AGGATCGACAACACACAGGGGAGATCAGGCCGATCCTCGGCTTGCACATTCAGCCTCTTCAACTG
* * * * * **
14706870 GCTGCGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
196 GCTGAGCGACCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCACCCCATGTCTAAG
** * * * *
14706935 CATATGGAGTTCTTTCCTAGCCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGACCAATAG
261 CATATCAAGTTCATTCCCAGCCTAAGATCAGACCAAACAGAGGGTTATGGTAGCAGGACCAATAG
14707000 CAGGATCGATAGCACGTAGGGGGGATCGA
326 CAGGATCGATAGCACGTAGGGGGGATCGA
* * ** * *
14707029 GCCGATCCTCGGCTTATGCATTATGCCTCTCCGGTCTACTCAGCGCCCGAATGCTCGTTTCGTGG
1 GCCGATCCCCAGCTTATGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCGTTTCGTGG
* * ** *
14707094 ATTGACTTCA-GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTGCGACA
66 ATTAACTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCAAGGGTTACGACA
* * * * * **
14707157 GTATGATCGATAGCACACA-GGGAGGATCAGGTCGATCCTCGGCTTGCACATTCAGCCTTTTCGG
129 GTAGGATCGACAACACACAGGGGA-GATCAGGCCGATCCTCGGCTTGCACATTCAGCCTCTTCAA
* * *
14707221 TTGGTTGAGCGACTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCAACCCCA-GTC
193 CTGGCTGAGCGACCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTC-ACCCCATGTC
*
14707285 TAAGCATATCAAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGTT
257 TAAGCATATCAAGTTCATTCCCAGCCTAAGATCAGACCAAACAGAGGGTT
14707335 GCGACAGCAG
Statistics
Matches: 252, Mismatches: 50, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
353 5 0.02
354 242 0.96
355 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (354 bp):
GCCGATCCCCAGCTTATGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCGTTTCGTGG
ATTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGACAGT
AGGATCGACAACACACAGGGGAGATCAGGCCGATCCTCGGCTTGCACATTCAGCCTCTTCAACTG
GCTGAGCGACCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCACCCCATGTCTAAG
CATATCAAGTTCATTCCCAGCCTAAGATCAGACCAAACAGAGGGTTATGGTAGCAGGACCAATAG
CAGGATCGATAGCACGTAGGGGGGATCGA
Found at i:14707442 original size:184 final size:184
Alignment explanation
Indices: 14707103--14707447 Score: 401
Period size: 184 Copynumber: 1.9 Consensus size: 184
14707093 GATTGACTTC
** * *** * * *
14707103 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGACAGTATGATCGAT
1 AGCATATCAAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGTTGCGACAGCAGGATCGAT
* * * * * * *
14707168 AGCACACAGGGAGGATCAGGTCGATCCTCGGCTTGCACATTCAGCCTTTTCGGTTGGTTGAGCGA
66 AGCACACAGGGAGGACCAGGTCAATCCCCGGCTTACACATTCAGCCTCTTCGGTCGGCTGAGCGA
* *
14707233 CTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCAACCCCAGTCTA
131 CCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCAACCCCAGTCTA
*
14707287 AGCATATCAAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGTTGCGACAGCAGGATCGGT
1 AGCATATCAAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGTTGCGACAGCAGGATCGAT
* * * *
14707352 AGCACGCAGGGGGGACC-GGGCTAATCCCCGGCTTACGCATTCTA-CCTCTTCGGTCGGCTGAGC
66 AGCACACAGGGAGGACCAGGTC-AATCCCCGGCTTACACATTC-AGCCTCTTCGGTCGGCTGAGC
* *
14707415 -ACCCGTACGCCCGTTTCGA-GGGTTGGCTTAGGC
129 GA-CCGCACACCCGTTTC-ATGGGTTGGCTTAGGC
14707448 GTAGGGAGTT
Statistics
Matches: 132, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
183 4 0.03
184 126 0.95
185 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
AGCATATCAAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGTTGCGACAGCAGGATCGAT
AGCACACAGGGAGGACCAGGTCAATCCCCGGCTTACACATTCAGCCTCTTCGGTCGGCTGAGCGA
CCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCAACCCCAGTCTA
Found at i:14708169 original size:26 final size:26
Alignment explanation
Indices: 14708129--14708181 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14708119 GTTGACTTAG
14708129 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
14708155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
14708181 G
1 G
14708182 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:14708323 original size:867 final size:850
Alignment explanation
Indices: 14706399--14708647 Score: 2233
Period size: 867 Copynumber: 2.6 Consensus size: 850
14706389 CCTCTCTGGC
* *
14706399 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT-
1 TTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* ** *
14706463 TGAACTGGACAGAAGGTTGCGACAGCA-AGATCAACAGCACGCAAGGGGACCGGGCCGATCCCCT
66 AGAAC-GGACAG-AGGTTGCGACAGCAGA-ATCGGCAGCACGCAGGGGGACCGGGCCGAT-CCCT
* * ** * * *
14706527 -GCTTCTGCATTCTGCCTCTCC-AGTCGGCTGAGCGCCCGTATGCCTGTTTCGTGGGTTGGCTTA
127 GGCTTC-GCATTCTACCTCTCCGA-TCGGCTGAG-GCACACACGCCCGTTTCATGGGTTGGCTTA
* * **
14706590 GGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACTGGT
189 GGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGAC
* * * * * * * *
14706655 AGCACACAAAGGGGGACTGGGCCGATCCCCAGCTTGTGCATTATGTCTCTCCGACCGACTCAGTG
254 AGCACGCAGAGGGGGACTGGGCCGAT-CCCGGCTTGTGCATTATGCCTCTCCGGCTGGCTCAGCG
* * * *
14706720 CCCGAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATC
318 CCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** * * ** ** **
14706785 GGACCAAGGGTTATGGTAGTAGGATCGACAACATGCAGGGGAGATCGGGCCGGTCCTTGGCTTGC
383 GAACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGGGAGATCGGGCCGACCCCCGGCTTGC
* ** * *
14706850 GCATTCTGCCTCTTCAACTGGCTGCGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
448 GCATTCTGCCTCTCCAACTGGCTGCGTGCCCGCAAACTCGTTTCATAGGTTGGCTTAGGCATACA
* * *
14706915 GAGTTCATTCCATGTCTAAGCATATGGAGTTCTTTCCTAGCCTAAGATCAGACCGAACCGAGGGT
513 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCAAGGGT
* * * *
14706980 TATGGTAGCAGGACCAATAGCAGGATCGATAGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTA
578 TATGGTAGCAGGACCAATAGCAGGATCGATAGCACGTAGGGGAGACCGAGCCGATCCCCAGCTTA
** * * * * * *
14707045 TGCATTATGCCTCTCCGGTCTACTCAGCGCCCGAATGCTCGTTTCGTGGATTGACTTCAGCATAT
643 TGCATTACACCTCTCCGGACTACTCAGCACCCGAACGCTCATTTCATGGATTGACTTCAGCATAC
* * * * ** * * *
14707110 GGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGACAGTATGATCGATAGCACAC
708 AGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGACAGGAGGAGCGATAGCACAC
* * * * * ** *
14707175 AGGGAGGATCAGGTCGATCCTCGGCTTGCACATTCAGCCTTTTCGGTTGGTTGAGCGACTGCACA
773 AGGGAGGACCAGGTCGATCCCCGGCTTGCACATTCAGCCTCTCCGGTCGACTGAGCGACCGCACA
*
14707240 CTCGTTTCATGGG
838 CTCATTTCATGGG
* *
14707253 TTGGCTTAGGCATACGGAGCTCAACCCCAGTCTAAGCATATC-AAGTTCATTCCCAGTCTAAGAT
1 TTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATA-CGAAGTTCATTCCCAGTCTAAGAT
* ** * * ** *
14707317 CAGACCAAACAGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCTAATCCCCG
65 CAGAACGGACAGA-GGTTGCGACAGCAGAATCGGCAGCACGCA-GGGGGACCGGGCCGATCCCTG
* * *
14707382 GCTTACGCATTCTACCTCTTCGGTCGGCTGA-GCACCCGTACGCCCGTTTCGA-GGGTTGGCTTA
128 GCTT-CGCATTCTACCTCTCCGATCGGCTGAGGCACAC--ACGCCCGTTTC-ATGGGTTGGCTTA
* * *
14707445 GGCGTAGGGAGTTCATTCCATGTCAAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGAC
189 GGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGAC
* * * * * * *
14707510 AGCATGTAGA-GGGG-CTGGGCCAATCCTCGGCTTGCGCATTATGCCTCTACGGGTGGCACAGCG
254 AGCACGCAGAGGGGGACTGGGCCGATCC-CGGCTTGTGCATTATGCCTCTCCGGCTGGCTCAGCG
* * * * * *
14707573 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGCCC
318 CCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* *
14707638 GAACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAAGAAGGGA-A-CTGGTCGACCCCCGGCT
383 GAACCGAGGGTTGCGGTAGCAGGATCGACAGCACAC-AG--GGGAGATCGGGCCGACCCCCGGCT
** * * * *
14707701 TGCGCATTCTGCCTCTCCGGCTGGTTG-TTCGCCCGTAAACTCGTTTCGTAGGTTGGCTTAGGCA
445 TGCGCATTCTGCCTCTCCAACTGGCTGCGT-GCCCGCAAACTCGTTTCATAGGTTGGCTTAGGCA
* * *
14707765 TACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AGATCA
509 TACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAGACCGA-ACCA
* * * *
14707829 AGGGTTGTGGTAGCAGGACCAGTAGCAGGATCGGTAGCACGTAAGGGGAGACCGAGCTGATCCCC
573 AGGGTTATGGTAGCAGGACCAATAGCAGGATCGATAGCACGT-AGGGGAGACCGAGCCGATCCCC
* * * * * * * *
14707894 AGTTTGTGCATTCCACCTCTCC-GACTGGCTGAGTACCCGCACGCTCATTTCATAGG-TTGGCTT
637 AGCTTATGCATTACACCTCTCCGGACT-ACTCAGCACCCGAACGCTCATTTCAT-GGATTGACTT
* * *
14707957 -AGGTATACAGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCAGGAC
700 CA-GCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTG-CG-A-CAGGA-
* *
14708019 CGGCAGCGAGATCGACAGCACGTAGAGG-GGACCAGG-CTGATCCCCGGCTTGCGCATT-ATGCC
758 -GG-AGC--GATAG-CA-CAC--AG-GGAGGACCAGGTC-GATCCCCGGCTTGCACATTCA-GCC
* * *
14708081 TCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGG
812 TCTCCGGTCGACTGAGCGACCGCACACTCATTTCATGGG
* *
14708120 TTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
14708185 GGATCGGACCGAGTGTTACGATAGCAGAATCGGCAGCACCCATGGGGGACCGAGCCGATCCTTGG
66 AGAACGGACAGAG-GTTGCGACAGCAGAATCGGCAGCACGCA-GGGGGACCGGGCCGATCCCTGG
* * * * *
14708250 CTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCACACACACCCGCTTCATAGGTTGGCTTCGGC
129 CTT-CGCATTCTACCTCTCCGATCGGCTGAG-GCACACACGCCCGTTTCATGGGTTGGCTTAGGC
* * * * *
14708315 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTTGTAGCGAGACCGACAGC
192 GTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
* * *
14708380 ACGCAGAGGGGGACCGGGACGATCCCTGACTTGTGCATTATGCCTCTCCGGCCT-GCTCAGCGCC
257 ACGCAGAGGGGGACTGGGCCGATCCC-GGCTTGTGCATTATGCCTCTCCGG-CTGGCTCAGCGCC
*
14708444 C-AACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-A
320 CGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA
* * * * * *** *
14708507 GACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGAGGGGACCGGGCCGATCACTAACTTTC
385 -ACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGG-GGAGATCGGGCCGACCCCCGGCTTGC
* * * ** * ** * * *
14708572 GCATTCTGCCTCTCCGACCGACTGATTGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACG
448 GCATTCTGCCTCTCCAACTGGCTGCGTGCCCGCAAACTCGTTTCATAGGTTGGCTTAGGCATACA
14708637 GAGTTCATTCC
513 GAGTTCATTCC
14708648 CAATCTAAGA
Statistics
Matches: 1129, Mismatches: 214, Indels: 90
0.79 0.15 0.06
Matches are distributed among these distances:
852 2 0.00
853 124 0.11
854 259 0.23
855 217 0.19
856 10 0.01
857 1 0.00
858 4 0.00
860 1 0.00
861 2 0.00
863 4 0.00
864 2 0.00
865 4 0.00
866 7 0.01
867 277 0.25
868 167 0.15
869 47 0.04
870 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (850 bp):
TTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
AGAACGGACAGAGGTTGCGACAGCAGAATCGGCAGCACGCAGGGGGACCGGGCCGATCCCTGGCT
TCGCATTCTACCTCTCCGATCGGCTGAGGCACACACGCCCGTTTCATGGGTTGGCTTAGGCGTAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
AGAGGGGGACTGGGCCGATCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGAACG
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAG
GGTTGCGGTAGCAGGATCGACAGCACACAGGGGAGATCGGGCCGACCCCCGGCTTGCGCATTCTG
CCTCTCCAACTGGCTGCGTGCCCGCAAACTCGTTTCATAGGTTGGCTTAGGCATACAGAGTTCAT
TCCATGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCAGACCGAACCAAGGGTTATGGTAG
CAGGACCAATAGCAGGATCGATAGCACGTAGGGGAGACCGAGCCGATCCCCAGCTTATGCATTAC
ACCTCTCCGGACTACTCAGCACCCGAACGCTCATTTCATGGATTGACTTCAGCATACAGAGTTCA
TTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGCGACAGGAGGAGCGATAGCACACAGGGAGGA
CCAGGTCGATCCCCGGCTTGCACATTCAGCCTCTCCGGTCGACTGAGCGACCGCACACTCATTTC
ATGGG
Found at i:14708458 original size:158 final size:156
Alignment explanation
Indices: 14708155--14708691 Score: 508
Period size: 158 Copynumber: 3.4 Consensus size: 156
14708145 CCCAGTCTAA
* * * * * * * * * *
14708155 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTACGATAGCAGAATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGTAGCAGGACCGACA
* * * * * * * *
14708220 GCACCCATGGGGGACCGAGCCGATCCTTGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCA
65 GCACGCAGGGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACC-GCTGAGTGCC
* * * *
14708285 CACACACCCGCTTCATAGGTTGGCTTCG
129 CACACACTCGTTTCATGGGTTGGCTTAG
* * * * **
14708313 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTTGTAGC-GAGACCGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGCGGTAGCAG-GACCGA
* * * * *
14708376 CAGCACGCAGAGGGGGACCGGGACGATCCCTGACTTGTGCATTATGCCTCTCCGGCCTGCTCAGC
63 CAGCACGCAG-GGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACC-GCTGAGT
*
14708441 GCCCA-ACACTCGTTTCATGGGTTGACTTAG
126 GCCCACACACTCGTTTCATGGGTTGGCTTAG
* * *
14708471 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGTAGCAGGACCGACA
* * *
14708536 GCACGCAGGAGGGGACCGGGCCGATCACTAACTT-TCGCATTCTGCCTCTCCGACCGACTGATTG
65 GCACGCAGG-GGGGACCGGGCCGATCCCTGACTTGT-GCATTCTGCCTCTCCGACCG-CTGAGTG
* *
14708600 CCCACACGCTTGTTTCATGGGTTGGCTTAG
127 CCCACACACTCGTTTCATGGGTTGGCTTAG
* * *
14708630 GCATACGGAGTTCATTCCCAATCTAAGATC-GAACCGGACCCGAGGGTTGCGGTAGCAGGACC
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAG-ACCAGA-CCGAGGGTTGCGGTAGCAGGACC
14708692 AGTAGCAGGA
Statistics
Matches: 310, Mismatches: 56, Indels: 24
0.79 0.14 0.06
Matches are distributed among these distances:
157 9 0.03
158 170 0.55
159 109 0.35
160 22 0.07
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGTAGCAGGACCGACAG
CACGCAGGGGGGACCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACCGCTGAGTGCCCA
CACACTCGTTTCATGGGTTGGCTTAG
Found at i:14708844 original size:26 final size:26
Alignment explanation
Indices: 14708814--14708866 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14708804 GTTGACTTAG
*
14708814 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14708840 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14708866 G
1 G
14708867 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14709523 original size:170 final size:172
Alignment explanation
Indices: 14709212--14709523 Score: 407
Period size: 170 Copynumber: 1.8 Consensus size: 172
14709202 CTGAGGGTTG
* * ** * * * *
14709212 CAGCAGTAGGATTGACAGCATGCAGGGGGGATTGGGTCGATCCTCAACTTGTGCATTCTGCTTCT
1 CAGCAGTAGGATTGACAGCACGAAGGGGGGACCGAGCCGATCCTCAACTTGCGCATTCTGCCTCT
* *
14709277 CCGACAGGCTGAGCGCCCGTACGTTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
66 CCGACAGGCTGAGCACCCG-AC--TACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
14709342 TCCCAGTCTAAGATCAGACCAAACCAAAGGTTACTGTAGTAGGAC
128 TCCCAGTCTAAGATCAGACCAAACCAAAGGTTACTGTAGTAGGAC
* *
14709387 CAGCAGTAGGATTGCCAGCACGTAAGGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTC
1 CAGCAGTAGGATTGACAGCACG-AAGGGGGGACCGAGCCGATCCTCAACTTGCGCATTCTGCCTC
* * * *
14709452 T-CGACCGGTTGAGCACCCG-C-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-
65 TCCGACAGGCTGAGCACCCGACTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
14709513 CCATGTCTAAG
130 CCA-GTCTAAG
14709524 CCCCAGTCGG
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
169 3 0.03
170 45 0.38
173 1 0.01
175 35 0.29
176 35 0.29
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (172 bp):
CAGCAGTAGGATTGACAGCACGAAGGGGGGACCGAGCCGATCCTCAACTTGCGCATTCTGCCTCT
CCGACAGGCTGAGCACCCGACTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
CAGTCTAAGATCAGACCAAACCAAAGGTTACTGTAGTAGGAC
Found at i:14710404 original size:26 final size:26
Alignment explanation
Indices: 14710368--14710420 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14710358 GTTGACTTAG
14710368 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14710394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14710420 G
1 G
14710421 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14711006 original size:159 final size:159
Alignment explanation
Indices: 14710705--14711080 Score: 438
Period size: 159 Copynumber: 2.4 Consensus size: 159
14710695 CAGCTGAGTA
* *
14710705 CCCGCACACTCGTTTCATGGGTTGACTTAGG-ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTC
* *
14710769 AGACTGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCAACTTA
66 AGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAACTTA
* * *
14710834 CGTATTATGCCTCTCCGGTCGGCTCAATG
131 CGCATTATACCTCTCCGATCGGCTCAATG
* * * * *
14710863 CCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-
* * **
14710926 TCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAG-GTGGGGACCGGGCTGATCCCTGAC
64 TCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG-GGGGACCGGGCCGATCCCCAAC
** * * * *
14710990 TTGTGCATTCTACCTCTCTGATCGGCTGAGTG
128 TTACGCATTATACCTCTCCGATCGGCTCAATG
* * * * *
14711022 CCTGTACTA-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGCA
1 CCCGCAC-ACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14711081 TACGGAGTTC
Statistics
Matches: 180, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
158 34 0.19
159 142 0.79
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (159 bp):
CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTC
AGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAACTTA
CGCATTATACCTCTCCGATCGGCTCAATG
Found at i:14711690 original size:157 final size:159
Alignment explanation
Indices: 14711402--14711860 Score: 423
Period size: 157 Copynumber: 2.9 Consensus size: 159
14711392 GGGGATCGAA
**
14711402 GGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCGGGCTGATCCCCGACTTACACATTAT
1 GGTTGTGGCAGCAGGATCGGCAACACGCAGAGAAGGACCGGGCTGATCCCCGACTTACACATTAT
* * *
14711467 GCCTTTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
14711532 TTCCCA-GTCTAAGATCAGACCAGACCGAG
131 TT-CCATGTCTAAGATCAGACCAGACCGAG
* * * * * * * *
14711561 GGTTGTGGCAGTAGGATCGGTAGCACGTAG-GAAGGACCGGGCTGATCCCCGGCTTGCGCA-TCT
1 GGTTGTGGCAGCAGGATCGGCAACACGCAGAGAAGGACCGGGCTGATCCCCGACTTACACATTAT
* * * * *
14711624 GCCTCTCCAGCCGGCTGAGCGTCCGCACGC-CTATTTTATGGGTTGGCTTAGGCATAGGGAGTTC
66 GCCTCTCCAGCCGGCTCAGCGCCCGCACGCTC-ATTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
14711688 ATTCCATGTCTAA-ACCCCAG-TCGGATCGAG
130 ATTCCATGTCTAAGA--TCAGACCAGACCGAG
* * * * * * ** * * * *
14711718 GGTTGTGGCAAC-GAAACCAGCAGCATGCAGAGGGGGATCGGG-TCGATCCCCGGCTTGCGCATT
1 GGTTGTGGCAGCAG-GATCGGCAACACGCAGAGAAGGACCGGGCT-GATCCCCGACTTACACATT
* ** * * * *
14711781 ATGACTCTCC-GGTGGACTCATCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
64 ATGCCTCTCCAGCCGG-CTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
14711845 TCATTCCATGTCTAAG
128 TCATTCCATGTCTAAG
14711861 CATACAGAGT
Statistics
Matches: 243, Mismatches: 46, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
156 6 0.02
157 93 0.38
158 56 0.23
159 87 0.36
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GGTTGTGGCAGCAGGATCGGCAACACGCAGAGAAGGACCGGGCTGATCCCCGACTTACACATTAT
GCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
TTCCATGTCTAAGATCAGACCAGACCGAG
Found at i:14711864 original size:26 final size:26
Alignment explanation
Indices: 14711834--14711886 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14711824 GTTGACTTAG
14711834 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14711860 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14711886 G
1 G
14711887 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14713125 original size:26 final size:26
Alignment explanation
Indices: 14713089--14713160 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
14713079 TAGGCGTACG
*
14713089 GAGTTCATCCCCAGTCTAAGCATATA
1 GAGTTCATCCCCAGTCTAAGCATACA
*
14713115 GAGTTCATCCCCAGTCTAAGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACA
* *
14713141 GAGTTCATTCCTAGTCTAAG
1 GAGTTCATCCCCAGTCTAAG
14713161 ATCGGATCGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCATACA
Done.