Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 113 of 402
Found at i:14713640 original size:26 final size:26
Alignment explanation
Indices: 14713610--14713662 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14713600 GTTGGCTTAG
*
14713610 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
14713636 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
14713662 G
1 G
14713663 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:14713811 original size:26 final size:26
Alignment explanation
Indices: 14713781--14713833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14713771 GTTGACTTAC
*
14713781 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
14713807 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
14713833 G
1 G
14713834 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:14714382 original size:315 final size:316
Alignment explanation
Indices: 14713806--14714512 Score: 841
Period size: 316 Copynumber: 2.2 Consensus size: 316
14713796 CCCCAGTCTA
* * * *
14713806 AGCATACGGAGTTAATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT-ACGACAGTAGGATCGA
1 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGACGACAATAGGATCGA
* * * * * * *
14713870 TAGCACACAGGGGGAATCAGGCCAATCCCCAGCTTGCGTATTCTGCCTCTCTAACCGGCTGAGCG
65 CAGCACACAGGGGGAATCAGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCAACAGGCTGAACA
* * * * *
14713935 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
130 CCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATATCTAAGCCCCAACC
* ** *
14714000 GGATCGAGGGTTATGGCAGTGGGACCGACAGCAAGCAGAAGGGGATCGGGCCAATCCTTGGCTTG
195 GGATCGAGGGTTATGGCAGTGGGACCGACAGCAAGCAGAAGGGGACCGGGCCAATCCCCGACTTG
* * * **
14714065 CGTATTATG-CTCTTCGGTCGGTTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTT
260 CGTATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTT
* * **
14714121 CTGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTTG-CAATAGGATCG
1 -AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGACGACAATAGGATCG
* * * **
14714185 ACAGCACGCAGGGGG-ATCGGGCCGATCCCC-GACTTGCGCATTCTACCTCTCCGGCAGGCTGAA
64 ACAGCACACAGGGGGAATCAGGCCAATCCCCAG-CTTGCGCATTCTACCTCTCCAACAGGCTGAA
* *
14714248 CACCCGCACGTCCGTTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTTCATATCTAAGCCCCAA
128 CACCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATATCTAAGCCCCAA
* * *** * * *
14714313 CCGGATCGAGGGTTGTGGCAGTGGGACCGATAGCACTTAGAGGGGGACCGGGTCGATCCCCGACT
193 CCGGATCGAGGGTTATGGCAGTGGGACCGACAGCAAGCAGAAGGGGACCGGGCCAATCCCCGACT
**
14714378 TGCGTATTATGCCTCTTCGATCGGCTCATTGCCCGCACGCTCATTTCATGGGTTGACTT
258 TGCGTATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTT
* * * ** *
14714437 AGTCATAAGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTG-CGATAGCAGGATTG
1 AG-CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGACGACAATAGGATCG
*
14714501 ATAGCACACAGG
64 ACAGCACACAGG
14714513 AGGGGATCGG
Statistics
Matches: 327, Mismatches: 57, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
314 1 0.00
315 161 0.49
316 163 0.50
317 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (316 bp):
AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTTGACGACAATAGGATCGAC
AGCACACAGGGGGAATCAGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCAACAGGCTGAACAC
CCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATATCTAAGCCCCAACCG
GATCGAGGGTTATGGCAGTGGGACCGACAGCAAGCAGAAGGGGACCGGGCCAATCCCCGACTTGC
GTATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTT
Found at i:14714504 original size:159 final size:155
Alignment explanation
Indices: 14713815--14714625 Score: 480
Period size: 159 Copynumber: 5.1 Consensus size: 155
14713805 AAGCATACGG
* * * * ** *
14713815 AGTTAATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGTAGGATCGATAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGA-AGTAGGATCGATAGCACGCAG
* * * * *** * *
14713880 GGGGAATCAGGCCAATCCCC-AGCTTGCGTATTCTGCCTCTCTAACCGGCTGAGCGCCCGCACGC
65 GGGG-ACCGGGCCGATCCCCGA-CTTGCGTATTATGCCTCT-TCGTCGGCTCAACGCCCGCACGC
* * * * *
14713944 CCGTTTCATGGGTTGGCTTAGGCATAGGG
127 TCGTTTCATGGGTTGACTTAGTCATAAGA
** * * * * * * *
14713973 AGTTCATT-CCATGTCTAAGCCCCAG-CTGGATCGAGGGTTATGGCAGTGGGACCGACAGCAAGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGT-GAAGTAGGATCGATAGCACGC
* * ** * * *
14714036 AGAAGGGGATCGGGCCAATCCTTGGCTTGCGTATTATG-CTCTTCGGTCGGTTCAGCGCCCGCAC
63 AG--GGGGACCGGGCCGATCCCCGACTTGCGTATTATGCCTCTTC-GTCGGCTCAACGCCCGCAC
** * *
14714100 GCTCGTTTTGTGGGTTGACTT-CTGCATACGA
125 GCTCGTTTCATGGGTTGACTTAGT-CATAAGA
*
14714131 AGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGTTGCAA-TAGGATCGACAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTG-TG-AAGTAGGATCGATAGCACGC
* * * * * * * *
14714194 AGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCAGGCTGAACACCCGCACG-
63 AGGGGGACCGGGCCGATCCCCGACTTGCGTATTATGCCTCTTCGTC-GGCTCAACGCCCGCACGC
* *
14714258 TCCGTTTCATGGGTT-AGCTTAGGCATAAGG
127 T-CGTTTCATGGGTTGA-CTTAGTCATAAGA
* * ** * * *
14714288 AGTTCATT-TCATATCTAAGCCCCA-ACCGGATCGAGGGTTGTGGCAGTGGGACCGATAGCACTT
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGT-GAAGTAGGATCGATAGCAC--
* **
14714351 AG-AGGGGGACCGGGTCGATCCCCGACTTGCGTATTATGCCTCTTCGATCGGCTCATTGCCCGCA
61 -GCAGGGGGACCGGGCCGATCCCCGACTTGCGTATTATGCCTCTTCG-TCGGCTCAACGCCCGCA
*
14714415 CGCTCATTTCATGGGTTGACTTAGTCATAAGA
124 CGCTCGTTTCATGGGTTGACTTAGTCATAAGA
* * * * * *
14714447 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAGGATTGATAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGA-AGTAGGATCGATAGCACGCA-
* * * ** * * * * * * * **
14714512 GAGGGGATCGGGCCGGTCCTCGGGTTACGCATTCTGGCTCTTCGATCGGTTGAGCGCCCGCACAT
64 G-GGGGACCGGGCCGATCCCCGACTTGCGTATTATGCCTCTTCG-TCGGCTCAACGCCCGCACGC
* * *
14714577 TCGTTTCGTGGGTTGGCTTAGGCATACA-A
127 TCGTTTCATGGGTTGACTTAGTCATA-AGA
14714606 AGTTCATT-CCATGTCTAAGA
1 AGTTCATTCCCA-GTCTAAGA
14714626 ATACGAAGTT
Statistics
Matches: 504, Mismatches: 112, Indels: 73
0.73 0.16 0.11
Matches are distributed among these distances:
156 35 0.07
157 87 0.17
158 137 0.27
159 234 0.46
160 11 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (155 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGAAGTAGGATCGATAGCACGCAGG
GGGACCGGGCCGATCCCCGACTTGCGTATTATGCCTCTTCGTCGGCTCAACGCCCGCACGCTCGT
TTCATGGGTTGACTTAGTCATAAGA
Found at i:14714636 original size:26 final size:26
Alignment explanation
Indices: 14714600--14714651 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14714590 TGGCTTAGGC
14714600 ATACAAAGTTCATT-CCATGTCTAAGA
1 ATACAAAGTTCATTCCCA-GTCTAAGA
*
14714626 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACAAAGTTCATTCCCAGTCTAAGA
14714652 TCGGACCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAAGA
Found at i:14715021 original size:159 final size:157
Alignment explanation
Indices: 14714684--14715137 Score: 439
Period size: 159 Copynumber: 2.9 Consensus size: 157
14714674 GTAGTAGGAC
* * * * **
14714684 CAGCAGCAGGATCGGCAGCATGCAGGGGGGACCGGGCCAATCCCCGGA-TTGTGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCACGTAGGGGAGACCGGGCTGATCCCC-GACTTGTGCATTCTGCCTC
* * * * * * *
14714748 TCTGACCGGGTGAACACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CC
65 TCCGACCAGCTGAGCA-CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC
*
14714812 ATGTCTAAGCCCCAGCTGGACCGAGGGTTG
129 A-GTCTAAGCCCCAGCCGGACCGAGGGTTG
** * * * * *
14714842 TGGCAGCGGGACCGATAGCACGTAGAGGGTGACCGGGCTGATCCCCGACTTGTGCATTATGCCTC
1 CAGCAGCAGGATCGACAGCACGTAG-GGGAGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTC
* * * * *
14714907 TCCGACCAGCTCAGCGCCTGTACGCTCATTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCC
65 TCCGACCAGCTGAGCACC-GTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC
** * *
14714972 AGTCTAAG-ATCGGACCGGATCGAGGGTTG
129 AGTCTAAGCCCCAG-CCGGACCGAGGGTTG
* * * * *
14715001 CAGCAGTAGGATCGACAGCACGTAGGGGAG-CCAGGCTGATCCTCGACTTGCGCATTCTACCTCT
1 CAGCAGCAGGATCGACAGCACGTAGGGGAGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCT
* * * * * **
14715065 CCGATCAGCTGAGCATCCGTACACTCGTTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCTT
66 CCGACCAGCTGAGCA-CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
14715130 GTCTAAGC
130 GTCTAAGC
14715138 ATACATATTT
Statistics
Matches: 236, Mismatches: 53, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 86 0.36
158 29 0.12
159 118 0.50
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
CAGCAGCAGGATCGACAGCACGTAGGGGAGACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCT
CCGACCAGCTGAGCACCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCCCCAGCCGGACCGAGGGTTG
Found at i:14715109 original size:157 final size:159
Alignment explanation
Indices: 14714774--14715137 Score: 396
Period size: 157 Copynumber: 2.3 Consensus size: 159
14714764 CCCGCACGCC
* *
14714774 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCGAGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACCGAGG
** * * * * * *
14714838 GTTGTGGCAGCGGGACCGATAGCACGTAGAGGGTGACCGGGCTGATCCCCGACTTGTGCATTATG
65 GTTGCAGCAGCAGGACCGACAGCACGTAGAGGGAGACCAGGCTGATCCCCGACTTGCGCATTATA
*
14714903 CCTCTCCGACCAGCTCAGCGCCTGTACGCT
130 CCTCTCCGACCAGCTCAGCGCCTGTACACT
* * * ** * *
14714933 CATTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGATCGAGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACCGAGG
* * * *
14714997 GTTGCAGCAGTAGGATCGACAGCACGTAG-GGGAG-CCAGGCTGATCCTCGACTTGCGCATTCTA
65 GTTGCAGCAGCAGGACCGACAGCACGTAGAGGGAGACCAGGCTGATCCCCGACTTGCGCATTATA
* * *
14715060 CCTCTCCGATCAGCTGAGCATCC-GTACACT
130 CCTCTCCGACCAGCTCAGC-GCCTGTACACT
* * * **
14715090 CGTTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCTTGTCTAAGC
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
14715138 ATACATATTT
Statistics
Matches: 168, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 86 0.51
158 8 0.05
159 71 0.42
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACCGAGGG
TTGCAGCAGCAGGACCGACAGCACGTAGAGGGAGACCAGGCTGATCCCCGACTTGCGCATTATAC
CTCTCCGACCAGCTCAGCGCCTGTACACT
Found at i:14715366 original size:510 final size:509
Alignment explanation
Indices: 14714174--14715658 Score: 1622
Period size: 514 Copynumber: 2.9 Consensus size: 509
14714164 AGGGTTGTTG
* * *
14714174 CAATAGGATCGACAGCACGCA-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCG
1 CAATAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * *
14714238 GCAGGCTGAACACCCGCACG-TCCGTTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTTCATAT
66 GCCGGCTGAACACCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
* * * *
14714302 CTAAGCCCCAACCGGATCGAGGGTTGTGGCAGTGGGACCGATAGCACTTAGAGGGGGACCGGG-T
130 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACATAGAGGGGGACCGGGCT
* * **
14714366 CGATCCCCGACTTGCGTATTATGCCTCTTCGATCGGCTCATTGCCCGCACGCTCATTTCATGGGT
195 -GATCCCCGACTTGCGCATTATGCCTCTCCGATC-GCTCAGCGCCCGCACGCTCATTTCATGGGT
* * * *
14714431 TGACTTAGTCATAAGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAG
258 TGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCG-CAGCAG
* * * * * * * ** * * * *
14714496 GATTGATAGCACACAGGAGGGGATCGGGCCGGTCCTCGGGTTACGCATTCTGGCTCTTCGATCGG
322 GATCGACAG--CAC-GCAGGGGAGCCGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGATCAG
* * *
14714561 TTGAGCGCCCGCACATTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGA
384 CTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGA
** * *
14714626 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGACCAG
449 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGACCAA
** * * * * * *
14714687 CAGCAGGATCGGCAGCATGCAGGGGGGACCGGGCCAATCCCCGGATTGTGCATTCTGCCTCTCTG
1 CAATAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * *
14714752 ACCGGGTGAACACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC
* * *
14714817 TAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGTGACCGGGCTG
131 TAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACATAGAGGGGGACCGGGCTG
* * * *
14714882 ATCCCCGACTTGTGCATTATGCCTCTCCGACCAGCTCAGCGCCTGTACGCTCATTTCATGGGTTG
196 ATCCCCGACTTGCGCATTATGCCTCTCCGATC-GCTCAGCGCCCGCACGCTCATTTCATGGGTTG
*
14714947 ACTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGTAGGA
260 ACTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC-GCAGCAGGA
* *
14715012 TCGACAGCACGTAGGGGAGCCAGGCTGATCCTCGACTTGCGCATTCTACCTCTCCGATCAGCTGA
324 TCGACAGCACGCAGGGGAGCC-GGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGATCAGCTGA
* * * * * *
14715077 GCATCCGTACACTCGTTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCTTGTCTAAGCATAC
388 GCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGAATAC
*
14715142 -ATA-TTTATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGACCAA
453 GA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGACCAA
* * *
14715197 CAATAGGATCGGTAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCG
1 CAATAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG
* *** * * *
14715262 GCCGGTTGAGTGCCCGCAAGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC
* * *
14715327 TAAGCCCCAGCCGAACCGAGGGTTGTGGTAGCAGGACCGACAGTGGGATCGATAGCACACAGAGG
131 TAAGCCCCAGCCGGACCGAGGGTTGT-G--GC---A--G-C---GGGACCGATAGCACATAGAGG
* * * * *
14715392 GGGACCGGGCTTATCCCC-AGCTTGCACATTATGCCTCTCGGGTCGACTGAGCGCCCGCACGCTC
184 GGGACCGGGCTGATCCCCGA-CTTGCGCATTATGCCTCTCCGATCG-CTCAGCGCCCGCACGCTC
* * * * *
14715456 GTTTCATGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGA-CAGAGGG
247 ATTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGG
* ** * * * *
14715520 GTGTTTCAGCAGGATCGACAGCATGCAGGGGGGACCGG-TCGATCCCCGACTTGAGCATTCTGCC
311 TTG-CGCAGCAGGATCGACAGCACGCAGGGGAG-CCGGCT-GATCCTCGACTTGCGCATTCTGCC
* * ** * * * * * ***
14715584 TCTCCAGTTGA-CTGAGTGCCCGCACACCCATTTCATTGGTTGGCTTACGCATAGGGAGTTCATT
373 TCTCC-GATCAGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATT
14715648 CCATGTCTAAG
437 CCATGTCTAAG
14715659 CTGTAGCAGA
Statistics
Matches: 812, Mismatches: 135, Indels: 41
0.82 0.14 0.04
Matches are distributed among these distances:
510 175 0.22
511 15 0.02
512 94 0.12
513 19 0.02
514 266 0.33
515 2 0.00
516 1 0.00
518 1 0.00
519 1 0.00
521 4 0.00
522 229 0.28
523 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (509 bp):
CAATAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG
GCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTC
TAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACATAGAGGGGGACCGGGCTG
ATCCCCGACTTGCGCATTATGCCTCTCCGATCGCTCAGCGCCCGCACGCTCATTTCATGGGTTGA
CTTAGTCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGCAGCAGGATC
GACAGCACGCAGGGGAGCCGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGATCAGCTGAGCA
CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGAATACGAA
GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGACCAA
Found at i:14715533 original size:171 final size:169
Alignment explanation
Indices: 14715151--14715540 Score: 417
Period size: 171 Copynumber: 2.3 Consensus size: 169
14715141 CATATTTATT
* * * * * * *
14715151 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGACCAACAATAGGATCGGTAGCACG
1 CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGTCAGCAGGACCGACAGTAGGATCGATAGCACA
** * * ** *
14715216 CAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGTTGAGTGCCCGCAA
66 CAGGGGGGACCGGGTCGATCCCCAGCTTGCACATTATACCTCTCCGGCCGACTGAGCGCCCGCAA
* * * *
14715281 GCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
131 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
** * *
14715320 CCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGT-AGCAGGACCGACAGTGGGATCGATAGC
1 CCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGT-GTCAGCAGGACCGACAGTAGGATCGATAGC
* * * *
14715383 ACACAGAGGGGGACCGGG-CTTATCCCCAGCTTGCACATTATGCCTCTCGGGTCGACTGAGCGCC
63 ACACAG-GGGGGACCGGGTC-GATCCCCAGCTTGCACATTATACCTCTCCGGCCGACTGAGCGCC
* *
14715447 CGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATCC
126 CGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-C
* * * *
14715492 CCAGTCTAAGATCAGACCGGACAGAGGGGTGTTTCAGCAGGATCGACAG
1 CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGTCAGCAGGACCGACAG
14715541 CATGCAGGGG
Statistics
Matches: 178, Mismatches: 35, Indels: 14
0.78 0.15 0.06
Matches are distributed among these distances:
169 3 0.02
170 54 0.30
171 118 0.66
172 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.21
Consensus pattern (169 bp):
CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGTCAGCAGGACCGACAGTAGGATCGATAGCACA
CAGGGGGGACCGGGTCGATCCCCAGCTTGCACATTATACCTCTCCGGCCGACTGAGCGCCCGCAA
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
Found at i:14715929 original size:157 final size:156
Alignment explanation
Indices: 14715418--14715965 Score: 475
Period size: 157 Copynumber: 3.5 Consensus size: 156
14715408 CCAGCTTGCA
* * *
14715418 CATTATGCCTCT-CGGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGTTTGACTTAGGCATACG
1 CATTATGCCTCTCCGGCT-GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACG
* * * * * ** *
14715482 GAGTTCATCCCCAGTCTAAGATCAGACCGGACAGAGGGGTGTTTCAGCAGGATCGACAGCATGCA
65 GAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGGGT-AGCAGGATCGACAGCATACA
* *
14715547 GGGGGGAC-CGGTCGATCCCCGACTTGA-G
129 -GGGGGACTGGGTCGATCCCTGACTT-ATG
* * * * * * * * * *
14715575 CATTCTGCCTCTCCAGTTGACTGAGTGCCCGCACACCCATTTCATTGGTTGGCTTACGCATAGGG
1 CATTATGCCTCTCCGGCTGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * * * * *
14715640 AGTTCATTCCATGTCTAAGCT-GTAGCAGACCGAGGGTTGTGGTAGC-GAGACCGGCAGCACACA
66 AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTG-GGTAGCAG-GATCGACAGCATAC-
*
14715703 GAGGGGGA-TCGGG-CTGATCCCTTG-C-CAGTG
128 -AGGGGGACT-GGGTC-GATCCC-TGACTTA-TG
* * * * *
14715733 CATTATGCCTCTTCGGCTGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATATGG
1 CATTATGCCTCTCCGGCTGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
14715798 AGTTCATTCCAAGTCTAAGATCGGATCGGACCGATGGTTGCGGTAGCAGGATCGATAGGATATAG
66 AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTG-GGTAGCAGGATCGACAGCATACAG
14715863 GGGGACTGGGTCGATCCCTGACTTATG
130 GGGGACTGGGTCGATCCCTGACTTATG
* * ** * * *
14715890 CATTTTACCTCTCCGGCTGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGA
1 CATTATGCCTCTCCGGCTGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
14715955 AGTTCATTCCA
66 AGTTCATTCCA
14715966 TGTTTAAGCA
Statistics
Matches: 304, Mismatches: 70, Indels: 34
0.75 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 28 0.09
157 157 0.52
158 88 0.29
159 29 0.10
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (156 bp):
CATTATGCCTCTCCGGCTGACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTGGGTAGCAGGATCGACAGCATACAGG
GGGACTGGGTCGATCCCTGACTTATG
Found at i:14715961 original size:315 final size:315
Alignment explanation
Indices: 14715380--14715974 Score: 739
Period size: 315 Copynumber: 1.9 Consensus size: 315
14715370 TGGGATCGAT
* ** * *
14715380 AGCACACAGAGGGGGACCGGGCTTATCCCCAGCTTGCACATTATGCCTCTCGGGTCGACTGAGCG
1 AGCACACAGAGGGGGACCGGGCTGATCCCCAGCCAGCACATTATGCCTCTCGGCTCGACTCAGCG
* *
14715445 CCCGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACC
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGATCAGACC
** *
14715510 GGACAGAGGGGTGTTTCAGCAGGATCGACAGCATGCAGGGGGGACCGGTCGATCCCCGACTTGAG
131 GGACAGAGGGGTGGGTCAGCAGGATCGACAGCATACAGGGGGGACCGGTCGATCCCCGACTTGAG
* * * * * *
14715575 CATTCTGCCTCTCCAGTTGACTGAGTGCCCGCACACCCATTTCATTGGTTGGCTTACGCATAGGG
196 CATTCTACCTCTCCAGCTGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTACGCATACGA
14715640 AGTTCATTCCATGTCTAAGCTGTAGCAGACCGAGGGTTGTGGTAGCGAGACCGGC
261 AGTTCATTCCATGTCTAAGCTGTAGCAGACCGAGGGTTGTGGTAGCGAGACCGGC
* ** **
14715695 AGCACACAGAGGGGGATCGGGCTGATCCCTTGCCAGTGCATTATGCCTCTTCGGCT-GACTCAGC
1 AGCACACAGAGGGGGACCGGGCTGATCCCCAGCCAGCACATTATGCCTC-TCGGCTCGACTCAGC
* * * * *
14715759 GCCCGCACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCAAGTCTAAGATCGGAT
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGATCAGAC
* * * * * * * *
14715824 CGGACCGATGGTTGCGGT-AGCAGGATCGATAGGATATA-GGGGGACTGGGTCGATCCCTGACTT
130 CGGACAGAGGGGTG-GGTCAGCAGGATCGACAGCATACAGGGGGGAC-CGGTCGATCCCCGACTT
* * ** * * * *
14715887 -ATGCATTTTACCTCTCCGGCTGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCAT
193 GA-GCATTCTACCTCTCCAGCTGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTACGCAT
*
14715951 ACGAAGTTCATTCCATGTTTAAGC
257 ACGAAGTTCATTCCATGTCTAAGC
14715975 ATGCGAAGTT
Statistics
Matches: 233, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
314 8 0.03
315 219 0.94
316 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (315 bp):
AGCACACAGAGGGGGACCGGGCTGATCCCCAGCCAGCACATTATGCCTCTCGGCTCGACTCAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGATCAGACC
GGACAGAGGGGTGGGTCAGCAGGATCGACAGCATACAGGGGGGACCGGTCGATCCCCGACTTGAG
CATTCTACCTCTCCAGCTGACTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTACGCATACGA
AGTTCATTCCATGTCTAAGCTGTAGCAGACCGAGGGTTGTGGTAGCGAGACCGGC
Found at i:14715999 original size:26 final size:26
Alignment explanation
Indices: 14715947--14715999 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14715937 GTTGGCTTAG
*
14715947 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
* *
14715973 GCATGCGAAGTTTATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
14715999 G
1 G
14716000 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:14716683 original size:26 final size:26
Alignment explanation
Indices: 14716647--14716699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14716637 GTTGACTTAG
*
14716647 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14716673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14716699 G
1 G
14716700 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14722676 original size:26 final size:26
Alignment explanation
Indices: 14722640--14722692 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14722630 GTTGACTTAG
14722640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14722666 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14722692 G
1 G
14722693 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14722870 original size:25 final size:26
Alignment explanation
Indices: 14722836--14722887 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
14722826 GTTGGCTTAG
14722836 GCATACGGAGTT-ATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14722861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14722887 G
1 G
14722888 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 10 0.40
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14723053 original size:26 final size:26
Alignment explanation
Indices: 14723023--14723075 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14723013 GTTGACTTAG
*
14723023 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCACAGTCTAA
*
14723049 GCATAAGAAGTTCATTCACAGTCTAA
1 GCATAAGAAGTTCATCCACAGTCTAA
14723075 G
1 G
14723076 ATCGTATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCACAGTCTAA
Found at i:14723076 original size:188 final size:187
Alignment explanation
Indices: 14722811--14723163 Score: 467
Period size: 188 Copynumber: 1.9 Consensus size: 187
14722801 GAGCGCCCGT
* * * * *
14722811 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTATTCCATGTCTAAGCATACGGAGTTCAT
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTATCCCATGTCTAAGCATAAGAAGTTCAT
* *** * *
14722876 TCCCAGTCTAAGATCGGACCAAACCGGGGGTTACAGCAGCAGGATCGGCAGCACGTAGGGGGGAT
66 TCACAGTCTAAGATCGGACCAAACCAAAGGTTACAGCAGCAGGATCGGCAGCACGCAGGGGGGAC
*
14722941 CAGGCCTATCCCCCACTTGC-GCATTCTGCCTCTCCTGCTGGCCTCTCCGGCTTGCAC
131 CAGGCCGATCCCCCACTT-CTGCATTCTGCCTCTCCTGCTGGCCTCTCCGGCTTGCAC
14722998 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATAAGAAGTTC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTT-AT-CCCATGTCTAAGCATAAGAAGTTC
* * ** * * * *
14723062 ATTCACAGTCTAAGATCGTATCGGATCAAAGGTTGCAGTAGCAGGATCGGTAGCACGCAGGGGGG
64 ATTCACAGTCTAAGATCGGACCAAACCAAAGGTTACAGCAGCAGGATCGGCAGCACGCAGGGGGG
**
14723127 ACCAGGCCGATCCCCGGCTTCTGCATTCTGCCTCTCC
129 ACCAGGCCGATCCCCCACTTCTGCATTCTGCCTCTCC
14723164 AATCGATTGA
Statistics
Matches: 141, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
187 36 0.26
188 102 0.72
189 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (187 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTATCCCATGTCTAAGCATAAGAAGTTCAT
TCACAGTCTAAGATCGGACCAAACCAAAGGTTACAGCAGCAGGATCGGCAGCACGCAGGGGGGAC
CAGGCCGATCCCCCACTTCTGCATTCTGCCTCTCCTGCTGGCCTCTCCGGCTTGCAC
Found at i:14724093 original size:26 final size:26
Alignment explanation
Indices: 14724063--14724115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14724053 GTTGACTTAG
14724063 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14724089 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14724115 G
1 G
14724116 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14724565 original size:157 final size:157
Alignment explanation
Indices: 14724085--14724589 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 157
14724075 CATCCCCAGT
* * *
14724085 CTAA-GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
1 CTAAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCGGTAGCAGGAT
* * * * ** * *
14724149 CGACAGCATGTAGGGGGGATCGGGCCGATCCCTAACTTGCGCATTCTGCCTCTCCGGCTGGCTGA
66 AGACAGCACGCAGGGGGGATCGGGTCGATCCC-AACTTGCGCATTCTGCCTCTCCTACCGGTTGA
* * *
14724214 GCGCCCGCACGCCCGTTTCATGGGTTCG
130 GCACCCGCACGCTCGTTTCATGGGTTGG
* * * ** * * *
14724242 CTTAGGCATAGGGAGTTCAGT-CCATGTCTAAGCCCTAG-CCGGACC-AAGGGTTGTGGTAGCGG
1 CTAAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATTAGACCAGACCGAA-GGTTGCGGTAGCAG
* ** * * * *
14724304 GACAGGTAGCACGCAGAGGGGGAACGGGTCGATCCTCGACTTGCGCATTATGCCTCTCCTATCGG
63 GATAGACAGCACGCAG-GGGGGATCGGGTCGATCC-CAACTTGCGCATTCTGCCTCTCCTACCGG
* * *
14724369 CTT-AGCACCCGCACGCTCATTTCGTGGGTTGA
126 -TTGAGCACCCGCACGCTCGTTTCATGGGTTGG
* * * * *
14724401 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAAGATTGCGGTAGCAAGAT
1 CTAAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCGGTAGCAGGAT
* * * ** *
14724466 TGACAGCACACAGGGGGGATCGGGTCGGA-CCCCACTTGTACATTCTGCCTCTTCTACCGGTTGA
66 AGACAGCACGCAGGGGGGATCGGGTC-GATCCCAACTTGCGCATTCTGCCTCTCCTACCGGTTGA
*
14724530 GCACTCGCACGCTCGTTTCATGGGTTGG
130 GCACCCGCACGCTCGTTTCATGGGTTGG
* * *
14724558 CTAAGGCATACGGAGTTCGTTCCAAGTCTAAG
1 CTAAGGCATATGGAGTTCATTCCCAGTCTAAG
14724590 CATATGGAGT
Statistics
Matches: 273, Mismatches: 63, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 83 0.30
158 64 0.23
159 117 0.43
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CTAAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCGGTAGCAGGAT
AGACAGCACGCAGGGGGGATCGGGTCGATCCCAACTTGCGCATTCTGCCTCTCCTACCGGTTGAG
CACCCGCACGCTCGTTTCATGGGTTGG
Found at i:14724598 original size:26 final size:27
Alignment explanation
Indices: 14724558--14724611 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
14724548 CATGGGTTGG
*
14724558 CTAAGGCATACGGAGTTCGTTCCAAGT
1 CTAAGGCATACGGAGTTCATTCCAAGT
* *
14724585 CTAA-GCATATGGAGTTCATTCCCAGT
1 CTAAGGCATACGGAGTTCATTCCAAGT
14724611 C
1 C
14724612 AAAGATCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATTCCAAGT
Found at i:14724978 original size:26 final size:26
Alignment explanation
Indices: 14724942--14724994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14724932 GTTGACTTAG
*
14724942 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14724968 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14724994 G
1 G
14724995 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14725558 original size:26 final size:26
Alignment explanation
Indices: 14725522--14725574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14725512 GTTGACTCAG
*
14725522 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14725548 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14725574 G
1 G
14725575 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14725564 original size:133 final size:133
Alignment explanation
Indices: 14725326--14725587 Score: 375
Period size: 133 Copynumber: 2.0 Consensus size: 133
14725316 CGATCCCCGA
* * * *
14725326 CTTACGCATTTTACCTCTCCGACCGACTGAGTACCCGCACGCTCGTTTCATTGGTTGGCTTAGGC
1 CTTACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATTGGTTGACTCAGGC
* *
14725391 ATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
66 ATACGGAGTTCATCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
14725456 AGG
131 AGG
* * *
14725459 CTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTCT-GTTGACTCAGG
1 CTTACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCAT-TGGTTGACTCAGG
* ** *
14725523 CATATGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGAC
65 CATACGGAGTTCAT-CCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCAGAC
14725587 C
129 C
14725588 AAGGGTTGCG
Statistics
Matches: 114, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
133 110 0.96
134 4 0.04
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (133 bp):
CTTACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATTGGTTGACTCAGGC
ATACGGAGTTCATCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
AGG
Found at i:14726464 original size:26 final size:26
Alignment explanation
Indices: 14726428--14726480 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14726418 GTTGAATTAG
*
14726428 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14726454 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14726480 G
1 G
14726481 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14727167 original size:26 final size:26
Alignment explanation
Indices: 14727138--14727190 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14727128 GTTGACTTAG
* *
14727138 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAATCTAA
14727164 GCATACAGAGTTCACTCCCAATCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
14727190 G
1 G
14727191 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:14727526 original size:159 final size:158
Alignment explanation
Indices: 14727164--14728015 Score: 567
Period size: 159 Copynumber: 5.4 Consensus size: 158
14727154 CCCAGTCTAA
* * * * * * ** **
14727164 GCATACAGAGTTCACTCCCAATCTAAGATTGGACCGGACTGAGGGTTGCGATAACAGGGTCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGACCGACA
* * * * ** * * * * * * *
14727229 GGACACAGGGGGGACCGAGCCGAT-CCTCGGCTCGCGTATTCTACCTCTCC-AGTTGACTGAGTG
66 GCACATAGGGGGGACCGGGCCGATCCCT-AGCTTACGCATTATGCCTCTCCGA-TCGGCTCAGCG
* * *
14727292 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACTCTCGTTTCGTGGGTTGACTTAG
** * * * **
14727322 GCATA-GAGAGTTCATT-CCATGTCTAAG-TCCCAGCCGGACTGAGGGTTACGGCAATGGGACCG
1 GCATACG-GAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAACAGGACCG
* * * * * *
14727384 ACAGCTCATAGAGGGGGATCGGGCTGATCCCTGGCTTATGCATTATGCTTCTCCGATCGGCTCAG
63 ACAGCACATAG-GGGGGACCGGGCCGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCTCAG
* *
14727449 CGCCCACACTCTCGTTTTGTGGGTTGACTTAG
127 CGCCCGCACTCTCGTTTCGTGGGTTGACTTAG
** * * ** * *
14727481 GTGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTCCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGACCGACA
* ** * * * ** * * * * * *
14727546 GAACGCAGGGGTGCACCGGCCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTGC
66 GCACATAGGGG-GGACCGGGCCGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGC
*
14727611 CCGCA-TGC-CTGTTTCGTGGGTTGGCTTAG
130 CCGCACT-CTC-GTTTCGTGGGTTGACTTAG
* ** ** * * *
14727640 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGACCGAC
** * * * * *
14727704 AGCA-AGTAGAGGGGGATTGGGCCGATCCCAAGCTTGCGCATTATGCCTCTCTGACCCGCTCAGC
65 AGCACA-TAG-GGGGGACCGGGCCGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCTCAGC
*
14727768 ACCCGCACTCTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACTCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
14727799 GCATACAGTGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAACAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGACCGACA
* * * * **
14727864 GCACGTAGGGGGGACCGGG-TGAT-CCTCAGCTTACGCATTCTGCCTCTCCGATC-GCTGAATGC
66 GCACATAGGGGGGACCGGGCCGATCCCT-AGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGC
* * * * *
14727926 CCGCACGCTCATTTCATTGGTTGGCTTAG
130 CCGCACTCTCGTTTCGTGGGTTGACTTAG
* * * ** *
14727955 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGAGTTATGGCAGCAGGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGACC
14728016 AGCAGCAGGA
Statistics
Matches: 530, Mismatches: 144, Indels: 42
0.74 0.20 0.06
Matches are distributed among these distances:
156 82 0.15
157 30 0.06
158 66 0.12
159 333 0.63
160 19 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAGGACCGACA
GCACATAGGGGGGACCGGGCCGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCC
CGCACTCTCGTTTCGTGGGTTGACTTAG
Found at i:14727859 original size:318 final size:316
Alignment explanation
Indices: 14727164--14728015 Score: 967
Period size: 318 Copynumber: 2.7 Consensus size: 316
14727154 CCCAGTCTAA
* * * * * *
14727164 GCATACAGAGTTCACTCCCAATCTAAGATTGGACCGGACTGAGGGTTGCGATAACAGGGTCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAACAGGATCGACA
* * * * * *
14727229 GGACACAGGGGGGACCGAGCCGATCCTCGGCTCGCGTATTCTACCTCTCC-AGTTGACTGAGTGC
66 GAACGCAGGGGGGACCG-GCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGA-TCGACTGAGTGC
* * * * *
14727293 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGTCCCAGCCG
129 CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCA
* * * *** * * ** *
14727358 GACTGAGGGTTACGGCAATGGGACCGACAGCTCATAGAGGGGGATCGGGCTGATCCCTGGCTTAT
194 AACCGAGGGTTATGGCAGCAGGACCGACAGCTAATAGAGGGGGATCGGGCCGATCCCAAGCTTAC
* * * * *
14727423 GCATTATGCTTCTCCGATCGGCTCAGCGCCCACACTCTCGTTTTGTGGGTTGACTTAG
259 GCATTATGCCTCTCCGACCCGCTCAGCACCCACACTCTCGTTTCGTGGGTTGACTTAG
** * * * *
14727481 GTGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTCCGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAACAGGATCGACA
* * * *
14727546 GAACGCAGGGGTGCACCGGCCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTGC
66 GAACGCAGGGG-GGACCGG-CCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGC
* *
14727611 CCGCATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
129 CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCA
* * *
14727676 AACCGAGGGTTGTGGCAGCAGGACCGACAGC-AAGTAGAGGGGGATTGGGCCGATCCCAAGCTTG
194 AACCGAGGGTTATGGCAGCAGGACCGACAGCTAA-TAGAGGGGGATCGGGCCGATCCCAAGCTTA
* *
14727740 CGCATTATGCCTCTCTGACCCGCTCAGCACCCGCACTCTCGTTTCGTGGGTTGACTTAG
258 CGCATTATGCCTCTCCGACCCGCTCAGCACCCACACTCTCGTTTCGTGGGTTGACTTAG
* * * * *
14727799 GCATACAGTGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAACAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAACAGGATCGACA
* * ** * * *
14727864 GCACGTAGGGGGGACCGGGTGATCCTCAGCTTACGCATTCTGCCTCTCCGATCG-CTGAATGCCC
66 GAACGCAGGGGGGACCGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCC
* * * * * * **
14727928 GCACG-CTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCA
131 GCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCCAACCA
*
14727991 AACCGAGAGTTATGGCAGCAGGACC
194 AACCGAGGGTTATGGCAGCAGGACC
14728016 AGCAGCAGGA
Statistics
Matches: 446, Mismatches: 83, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
314 2 0.00
315 78 0.17
316 32 0.07
317 70 0.16
318 263 0.59
319 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAACAGGATCGACA
GAACGCAGGGGGGACCGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCC
GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCAAA
CCGAGGGTTATGGCAGCAGGACCGACAGCTAATAGAGGGGGATCGGGCCGATCCCAAGCTTACGC
ATTATGCCTCTCCGACCCGCTCAGCACCCACACTCTCGTTTCGTGGGTTGACTTAG
Found at i:14729524 original size:184 final size:183
Alignment explanation
Indices: 14729173--14729583 Score: 497
Period size: 184 Copynumber: 2.2 Consensus size: 183
14729163 GACTGAGCAT
* * *
14729173 CCGCACGCTCGTTTCGTGGGTTGACATAGGCATAAAGAGTTCATCCCCAGTCTAAGCATACGAAG
1 CCGCACG-TCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCCAAGCATACGAAG
* * ** * * *
14729238 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGG
65 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGG
* * * * *
14729303 GTGATCGAGTTGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAGC-G
130 GGGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGG
* *
14729356 CCTGCACGATCGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATCCCCAGTCCAAGCATAC-AG
1 CC-GCACG-TCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCCAAGCATACGA-
*
14729420 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGTACGCAG
63 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAG
* * * * *
14729485 GGGGGACC-AGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGG
128 GGGGGACCGA-GTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGG
* * * *
14729541 CCGCACGTCCATTTTGT-GGTTGGCTTAGGCATAGGGAGTTCAT
1 CCGCACGT-CGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCAT
14729584 TCCATGTCTA
Statistics
Matches: 194, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
183 28 0.14
184 163 0.84
185 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (183 bp):
CCGCACGTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCCAAGCATACGAAGT
TCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGG
GGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGG
Found at i:14729772 original size:159 final size:156
Alignment explanation
Indices: 14729412--14729913 Score: 381
Period size: 159 Copynumber: 3.2 Consensus size: 156
14729402 CCCAGTCCAA
* * * *
14729412 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCAGCAGCAAGACCGACA
* * * * * * * *
14729477 GTACGCAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGGC
65 GCACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
*
14729542 CGCACGTCCATTTTGTGGTTGGCTTAG
130 CGCACGTCCATTTTGTGGTTGACTTAG
* ** ** * **
14729569 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGAC-GAGGGTTGCAGCAGCAAGACCGA
* * * **
14729632 CAGCACATAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTTTCCGATTGGCTCAGC
63 CAGCACACAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGC
*
14729697 GCCCGCACG-CTCGTTTCATG-GGTTGACTTAG
127 GCCCGCACGTC-CATTT--TGTGGTTGACTTAG
* * * *
14729728 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTAC-GACAGCAAGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCAG-CAGCAAGACCGAC
* * * * * * * * ** * *
14729792 AGCA-AGCAGGGTGGGATCGGGCTGATTCCTGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGC
64 AGCACA-CAGGG-GGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGC
* * * * *
14729856 ACCCGTATG-CTCATTTCGTGGGTTGGCTTAG
127 GCCCGCACGTC-CATTTTGT-GGTTGACTTAG
14729887 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
14729914 CATACCGAGT
Statistics
Matches: 272, Mismatches: 57, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
156 4 0.01
157 51 0.19
158 67 0.25
159 144 0.53
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCAGCAGCAAGACCGACAG
CACACAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCC
GCACGTCCATTTTGTGGTTGACTTAG
Found at i:14729923 original size:26 final size:26
Alignment explanation
Indices: 14729887--14729939 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14729877 GTTGGCTTAG
*
14729887 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
14729913 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
14729939 G
1 G
14729940 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:14730855 original size:881 final size:882
Alignment explanation
Indices: 14729384--14730979 Score: 2172
Period size: 881 Copynumber: 1.8 Consensus size: 882
14729374 GGGTTGATTT
*
14729384 AGGCATATGGAGTTCATCCCCAGTCCAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAG
1 AGGCATATGGAGTTCATCCCCAGTCCAAGCATACAGAGTTCATTCCCAATCCAAGATCAGACCAG
* * *
14729449 ACCGAGGGTTGCAGCAGCAAGATCGACAGTACGCAGGGGGGACCAGGTCGATCCCCGACTTGCGC
66 ACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGAGGGACCAGGTCGATCCCCGACTTGCAC
*** * * * *
14729514 ATTCTGCCTCTCCGGCCGGTTGAGCGGCCGCACGTCCATTTTGTGGTTGGCTTAGGCATAGGGAG
131 ATTCTGCCTCTCCGGCCGACGGAGCGCCCACACATCCATTTTGTGGTTGGATTAGGCATAGGGAG
* * * *
14729579 TTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGCGGGACCGACAGCACATAGAG
196 TTCATTCCATGTCTAAGACCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACACAGAG
* * * * *
14729644 GGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTTTCCGATTGGCTCAGCGCCCGCACGCTC
261 GGGGACCGCGCCGATCCCAGACTTGCGCATTATGCCTTTCCGATCGGCTCAGCCCCCGAACGCTC
* * *
14729709 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGT
326 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCGGATCAAGGGT
* * *
14729774 TACGACAGCAAGATCGATAGCAAGCAGGGTGGGATCGGGCTGATTCCTGGCTTGCACATTCTGCC
391 TACGACAGCAAGATCGACAGCAAGCAGGGTGGGATCGGGCTGATCCCTGGCTTACACATTCTGCC
* * * * *
14729839 TCTCCGGTCGACTGAGCACCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
456 TCTCCGATCGACTGAGCACCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTC
* * * *
14729904 CATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCA
521 CATGTCTAAGCATACCGAGTTCAATCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCA
* *
14729969 GGACCAGCAGTAGGATCGACAGCACACAGG-GGGGA-TCAGGTCGATCCCC-AGCTTGTGCATTC
586 GGACCAGCAGCAGGATCGACAGCACACAGGAGGGGACT-AGGTCGATCCCCGA-CTTGCGCATTC
* * *
14730031 TGCCTTTCCGACCAGCTGAG-CGCCCGAACGCTCGTTTCGTGCGTTGGCTTAGGCATACGAAGTT
649 TGCCTCTCCGACCAGCTGAGTC-CCCGAACGCTCATTTCGTGCGTTGACTTAGGCATACGAAGTT
14730095 CATTCCATTTCTAGGCCCTAGTCGGACCGAGGGCTATGGCAGCAGGATCGACAACTGGATCAACA
713 CATTCCATTTCTAGGCCCTAGTCGGACCGAGGGCTATGGCAGCAGGATCGACAACTGGATCAACA
14730160 GTACGCTAAAGGGGATCAGGCTGATCCCCGGCTTGCACAATATGCCTCTTCGACCAGCCTCTCCG
778 GTACGCTAAAGGGGATCAGGCTGATCCCCGGCTTGCACAATATGCCTCTTCGACCAGCCTCTCCG
14730225 ACTGGCTAAGAACCCGCATGCTTGTTTTGTGGGTTAACTG
843 ACTGGCTAAGAACCCGCATGCTTGTTTTGTGGGTTAACTG
* *
14730265 AGGCATATGGAGTTCATCCCCAGTCTAAGCATGCAGAGTTCATTCCCAATCCAAGATCAGACCAG
1 AGGCATATGGAGTTCATCCCCAGTCCAAGCATACAGAGTTCATTCCCAATCCAAGATCAGACCAG
* * * *
14730330 ACCGAGGTTTGC-GATAGCAGGATCGACAGCATGCAGGAGGGACC-GAGTCGATCCCC-AGCTTG
66 ACCGAGGGTTGCAG-CAGCAAGATCGACAGCACGCAGGAGGGACCAG-GTCGATCCCCGA-CTTG
* * *
14730392 CACATTCTGCCTCTTCGGCCGACGGAGCGCCCACACATTCGTTTCATG-GGTTGGATTAGGCATA
128 CACATTCTGCCTCTCCGGCCGACGGAGCGCCCACACATCCATTT--TGTGGTTGGATTAGGCATA
* * * * *
14730456 GGGAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGTGGTAGTAGGACTGGCAGCACG
191 GGGAGTTCATTCCATGTCTAAGACCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACA
* * * *
14730521 CAGAGGGGGACCGCGTCGATCCCTAG-CTTGCGCATTATGCTTTTTCGGTCGGCTCAGCCCCCGA
256 CAGAGGGGGACCGCGCCGATCCC-AGACTTGCGCATTATGCCTTTCCGATCGGCTCAGCCCCCGA
* * ** *
14730585 ATGCTTGTTTTGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACC-GAT
320 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-GAGACCGGAT
* * * **
14730648 CAAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGTGGGATCGGG-TCGATCCCTGGCTTATGC
384 CAAGGGTTACGACAGCAAGATCGACAGCAAGCAGGGTGGGATCGGGCT-GATCCCTGGCTTACAC
* * * * *
14730712 ATTCTGTCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATGCATA
448 ATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGA
* * * * *
14730777 GTTCATTCCATGTCTAAGCATACGGAGTTCAATCCTAATCTAAGATCAGACTGGACTGAGGTTTA
513 GTTCATTCCATGTCTAAGCATACCGAGTTCAATCCCAATCTAAGATCAGACCGGACCGAGGGTTA
* * * ** ** *
14730842 TGGCAGTAGGACCAGCAGCAGGATCGGTAGCACGTAGGAGGGGACTGGGTCGATCCCCGACTTGC
578 CGACAGCAGGACCAGCAGCAGGATCGACAGCACACAGGAGGGGACTAGGTCGATCCCCGACTTGC
* * * * * *
14730907 GTATTCTGCCTCTCCGATCGGCTGAGTCCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
643 GCATTCTGCCTCTCCGACCAGCTGAGTCCCCGAACGCTCATTTCGTGCGTTGACTTAGGCATACG
*
14730972 GAGTTCAT
708 AAGTTCAT
14730980 CCCCAGTCTA
Statistics
Matches: 610, Mismatches: 93, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
880 4 0.01
881 343 0.56
882 256 0.42
883 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (882 bp):
AGGCATATGGAGTTCATCCCCAGTCCAAGCATACAGAGTTCATTCCCAATCCAAGATCAGACCAG
ACCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGAGGGACCAGGTCGATCCCCGACTTGCAC
ATTCTGCCTCTCCGGCCGACGGAGCGCCCACACATCCATTTTGTGGTTGGATTAGGCATAGGGAG
TTCATTCCATGTCTAAGACCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACACAGAG
GGGGACCGCGCCGATCCCAGACTTGCGCATTATGCCTTTCCGATCGGCTCAGCCCCCGAACGCTC
GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCGGATCAAGGGT
TACGACAGCAAGATCGACAGCAAGCAGGGTGGGATCGGGCTGATCCCTGGCTTACACATTCTGCC
TCTCCGATCGACTGAGCACCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTC
CATGTCTAAGCATACCGAGTTCAATCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCA
GGACCAGCAGCAGGATCGACAGCACACAGGAGGGGACTAGGTCGATCCCCGACTTGCGCATTCTG
CCTCTCCGACCAGCTGAGTCCCCGAACGCTCATTTCGTGCGTTGACTTAGGCATACGAAGTTCAT
TCCATTTCTAGGCCCTAGTCGGACCGAGGGCTATGGCAGCAGGATCGACAACTGGATCAACAGTA
CGCTAAAGGGGATCAGGCTGATCCCCGGCTTGCACAATATGCCTCTTCGACCAGCCTCTCCGACT
GGCTAAGAACCCGCATGCTTGTTTTGTGGGTTAACTG
Found at i:14731028 original size:197 final size:197
Alignment explanation
Indices: 14730660--14731034 Score: 463
Period size: 197 Copynumber: 1.9 Consensus size: 197
14730650 AGGGTTGCGA
* * * *
14730660 CAGCAGGATCGACAGCACGCAGGGTGGGATCGGGTCGATCCCTGGCTTATGCATTCTGTCTCTCC
1 CAGCAGGATCGACAGCACGCAGGGTGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCC
* * * *
14730725 GATCGGCTGAGCGCCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATGCATAGTTCATTCCATGT
66 GATCGGCTGAGCGCCCGCACGCTCATTTCGTGCGTTGACTTAGGCATACAGAGTTCATCCCATGT
* * *
14730790 CTAAGCATACGGAGTTCAATCCTAATCTAAGATCAGACTGGACTGAGGTTTATGGCAGTAGGACC
131 CTAAGCATACGGAGCTCAATCCTAATCAAAGATCAGACTGGACCGAGGTTTATGGCAGTAGGACC
14730855 AG
196 AG
** * * *
14730857 CAGCAGGATCGGTAGCACGTAGGAG-GGGA-CTGGGTCGATCCCCGACTTGCGTATTCTGCCTCT
1 CAGCAGGATCGACAGCACGCAGG-GTGGGATC-GGGTCGATCCCCGACTTACGCATTCTGCCTCT
* * *
14730920 CCGATCGGCTGAGTC-CCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
64 CCGATCGGCTGAG-CGCCCGCACGCTCATTTCGTGCGTTGACTTAGGCATACAGAGTTCAT-CCC
* * **
14730984 A-GTCTAAGCATACGGAGCTCATTACC-AGTCAAAGATTGGACTGGACCGAGG
127 ATGTCTAAGCATACGGAGCTCAAT-CCTAATCAAAGATCAGACTGGACCGAGG
14731035 GTTGCGGTAG
Statistics
Matches: 150, Mismatches: 23, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
196 1 0.01
197 142 0.95
198 7 0.05
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (197 bp):
CAGCAGGATCGACAGCACGCAGGGTGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCC
GATCGGCTGAGCGCCCGCACGCTCATTTCGTGCGTTGACTTAGGCATACAGAGTTCATCCCATGT
CTAAGCATACGGAGCTCAATCCTAATCAAAGATCAGACTGGACCGAGGTTTATGGCAGTAGGACC
AG
Found at i:14731509 original size:158 final size:158
Alignment explanation
Indices: 14731030--14731512 Score: 455
Period size: 158 Copynumber: 3.1 Consensus size: 158
14731020 TGGACTGGAC
* * * * * *
14731030 CGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAAGGGAGACAGGGCTGATCCCCGGCTTGTGCAT
1 CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAAGGGGGACAGGGCAGATCCCTGGCTTGCGCAT
* * * * * *
14731095 TCTGCCTCTCCGATCGGTTGAGCACCCGTACGC-CTGTTTAATGGGTTGGCTTAGGCATAGGGAG
66 TCTGCCTCTCCGACCGGTTGAGCGCCCGCACACTC-GTTTAGTGGGTTGGCTTAGGCATACGGAG
* *
14731159 TTCATTCCATGTCTAAGCCCCAACCGGGT
130 TTCATTCCATGTCTAAGCCCCAATCGGAT
* * ** * *
14731188 TG-GGGTTTGTGGCAGTGGGACCGACAGCATGCAGAGGGGGATC-GGGCCGAT-CCTCGGCTTGC
1 CGAGGG-TTGCGGCAGCAGGATCGACAGCATGCA-AGGGGGA-CAGGGCAGATCCCT-GGCTTGC
* * * * **
14731250 GCATTATGCCTCTCCGACCGGTTGAGCAGCCCGCACACTCGTTTCGTGGTTTGACTTA-G-ATTT
62 GCATTCTGCCTCTCCGACCGGTTGAGC-GCCCGCACACTCGTTTAGTGGGTTGGCTTAGGCATAC
** *
14731313 GGAGTTCATTCCCA-GTCTAAGATCAAATC--AT
126 GGAGTTCATT-CCATGTCTAAGCCCCAATCGGAT
* * * * *
14731344 ACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGGGGACCAGGTCAG-TCCCTGACTTACG
1 -C-GAGGGTTGCGGCAGCAGGATCGACAGCATGCAAGGGGGA-CAGGGCAGATCCCTGGCTTGCG
* * * *
14731408 CATTCTGCCTCTTCGGCCGGTTGAGCGCCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACAG
63 CATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACACTCGTTTAGTGGGTTGGCTTAGGCATACGG
*
14731473 AGTTCATTCCATGTCTAAGCCCCAGTCGGAT
128 AGTTCATTCCATGTCTAAGCCCCAATCGGAT
14731504 CGAGGGTTG
1 CGAGGGTTG
14731513 TGGTAGCAAG
Statistics
Matches: 256, Mismatches: 52, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
156 28 0.11
157 45 0.18
158 106 0.41
159 52 0.20
160 24 0.09
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAAGGGGGACAGGGCAGATCCCTGGCTTGCGCAT
TCTGCCTCTCCGACCGGTTGAGCGCCCGCACACTCGTTTAGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAATCGGAT
Found at i:14732046 original size:26 final size:26
Alignment explanation
Indices: 14731993--14732046 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14731983 TGGGTTGACT
*
14731993 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAATC
* *
14732019 TAGGCATACGGAGTTCATTCCTAATC
1 TAGGCATACGGAGTTCATCCCCAATC
14732045 TA
1 TA
14732047 AGATCAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAATC
Found at i:14732522 original size:159 final size:157
Alignment explanation
Indices: 14732019--14732524 Score: 423
Period size: 159 Copynumber: 3.2 Consensus size: 157
14732009 ATCCCCAGTC
* ** * *
14732019 TAGGCATACGGAGTTCATTCCTAA-TCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
1 TAGGCATACGAAGTTCATTCC-AAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGGTC
* * *
14732083 GAC-GACACGAAGGAGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTATCCGATC-AGCTG
65 GACAG-CACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTATCCGATCGA-CTG
* * *
14732146 AGTGCCCGCACCCCCGTTTCGTGGGTTGGCT
128 AGTCCCCGCACACTCGTTTCGTGGGTT-GCT
* * * * ** * *
14732177 TAGGCATAGGGAGTTCATTCGATGTCTAACCCTTA-ACTGGACTGAGGGTTGTGGCAGCA-GGAC
1 TAGGCATACGAAGTTCATTCCAAGTCTAA-GATCAGACTGGACTGAGGGTTGTGGCAGCAGGGTC
** * * * * * * *
14732240 TGGTAGCACGAAGAGGGGGACCAGGCCGATCCCCGGCTTGCGTATTATGCTTGTCCGATCGGCTT
65 -GACAGCACGAAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTATCCGATCGACTG
* * * ** *
14732305 AGCCCCCGAACACTGGTTTTATGGGTTGACC
128 AGTCCCCGCACACTCGTTTCGTGGGTTG-CT
* * * *
14732336 TAGGCTTAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCTGCAGGGTC
1 TAGGCATACGA-AGTTCATTCCAAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGGTC
* * * * * * * *
14732400 GACAGCACGCAGTGGGGGATCGGGTCGGTCCCTGGCTTGCGCATTCTACCTCTTCGATCGACTGA
65 GACAGCACGAAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTATCCGATCGACTGA
* *
14732465 GTTCCCGCACGCTCGTTTCGTGGGTTAGCT
129 GTCCCCGCACACTCGTTTCGTGGGTT-GCT
14732495 TAGGCATACGAAGTTCATT-CAATGTCTAAG
1 TAGGCATACGAAGTTCATTCCAA-GTCTAAG
14732525 CATATGGAGT
Statistics
Matches: 264, Mismatches: 71, Indels: 25
0.73 0.20 0.07
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 198 0.75
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
TAGGCATACGAAGTTCATTCCAAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGGTCG
ACAGCACGAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTATCCGATCGACTGAGT
CCCCGCACACTCGTTTCGTGGGTTGCT
Found at i:14732894 original size:26 final size:26
Alignment explanation
Indices: 14732864--14732916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14732854 GTTGACTTAG
14732864 GCATACGAAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
14732890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14732916 G
1 G
14732917 ATCAACCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14733377 original size:26 final size:26
Alignment explanation
Indices: 14733338--14733390 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14733328 GTTGGGTTAG
14733338 GCATACAGAATTCATTC-CATGTCTTA
1 GCATACAGAATTCATTCTCA-GTCTTA
* *
14733364 GCATACGGAGTTCATTCTCAGTCTTA
1 GCATACAGAATTCATTCTCAGTCTTA
14733390 G
1 G
14733391 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACAGAATTCATTCTCAGTCTTA
Found at i:14733926 original size:26 final size:26
Alignment explanation
Indices: 14733889--14733941 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14733879 GTTGGCTTAG
14733889 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14733915 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
14733941 G
1 G
14733942 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14734040 original size:11 final size:11
Alignment explanation
Indices: 14734011--14734043 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14734001 CCCGGGGCAT
*
14734011 CATCGTCAGAG
1 CATCGTCGGAG
14734022 CATCGTCGGAG
1 CATCGTCGGAG
14734033 CATCGTCGGAG
1 CATCGTCGGAG
14734044 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:14734659 original size:26 final size:26
Alignment explanation
Indices: 14734623--14734674 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14734613 TTGACTTAGC
*
14734623 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAATCTAAG
* *
14734649 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGAAGTTCATCCCCAATCTAAG
14734675 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAG
Found at i:14734892 original size:26 final size:25
Alignment explanation
Indices: 14734856--14734904 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
14734846 GTTGGCTTAG
14734856 GCATACGGAGTTCATCCCCAGTCTGA
1 GCATACGGAGTTCAT-CCCAGTCTGA
*
14734882 GCATACGGAGTTCATTCCAGTCT
1 GCATACGGAGTTCATCCCAGTCT
14734905 AAGATCAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTGA
Found at i:14735172 original size:159 final size:157
Alignment explanation
Indices: 14734882--14735382 Score: 391
Period size: 158 Copynumber: 3.2 Consensus size: 157
14734872 CCCAGTCTGA
* * * *
14734882 GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCGACAG
1 GCATACGGAGTTCATTCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGACAGCAGGACCAACAG
* * * * *
14734947 CACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCGCTCCGACCGGCTGAGCACCC
66 CACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCGCTCCGACCGGCTCAGCACCC
14735012 GCACGTCCGTTTCATGGGTTGGCTTAG
131 GCACGTCCGTTTCATGGGTTGGCTTAG
* * * * *
14735039 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAGCGGGACCAAC
1 GCATACGGAGTTCATTCCA-GTCTAAGACC-AGATCGGACCGAGGGTTGCGACAGCAGGACCAAC
* * * ** *
14735103 AGCACGCAGCGGGGGATCGGGCCGAT-CCCTGCCTTACGCATTATGCCTCTTTGATCGGCTCAGC
64 AGCACGCAG-GGGGGACCGGGCCGATCCCCAG-CTTACGCATTATGCCGCTCCGACCGGCTCAGC
* *** ** * *
14735167 GCCCGCACGCTAATTTTC-TAAGTTGACTTAT
127 ACCCGCACG-TCCGTTTCATGGGTTGGCTTAG
* * ** ** * * * * *
14735198 GCATACAGAGTTCATTCCCTGTGAAAGATTAGACCGGACCAAGGGTTGC-ACAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCAGATCGGACCGAGGGTTGCGACAGCAGGACCAACA
* * ** * * * ** * *
14735262 GCACGCAGGGGTGGACCAGGCTGATCTTCAGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCAC
65 GCACGCAGGGG-GGACCGGGCCGATCCCCAGCTTACGCATTATGCCGCTCCGACCGGCTCAGCAC
** * *
14735327 GAGCACG-CTCGTTCCGTGGGTTGGCTTAG
129 CCGCACGTC-CGTTTCATGGGTTGGCTTAG
*
14735356 GCATACGGAGTTAATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
14735383 CATATGGAGT
Statistics
Matches: 259, Mismatches: 73, Indels: 23
0.73 0.21 0.06
Matches are distributed among these distances:
157 26 0.10
158 134 0.52
159 92 0.36
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAGATCGGACCGAGGGTTGCGACAGCAGGACCAACAG
CACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCGCTCCGACCGGCTCAGCACCC
GCACGTCCGTTTCATGGGTTGGCTTAG
Found at i:14735392 original size:26 final size:26
Alignment explanation
Indices: 14735356--14735408 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14735346 GTTGGCTTAG
14735356 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
14735382 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
14735408 G
1 G
14735409 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:14736106 original size:26 final size:26
Alignment explanation
Indices: 14736077--14736129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14736067 GTTGACTTAG
*
14736077 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
14736103 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14736129 G
1 G
14736130 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14736587 original size:157 final size:156
Alignment explanation
Indices: 14736110--14736601 Score: 506
Period size: 157 Copynumber: 3.1 Consensus size: 156
14736100 TAAGCATACA
* * *
14736110 GAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGT
1 GAGTTCATT-CCATGTCTAAGATTGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * * * * *
14736174 A-GGGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCTAGTCGGCTGAGCGCCCGTATG
65 AGGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACG
* *
14736238 CCCGTTTCTTGGGTTGGCTTAGGCATAG
129 CTCGTTTCATGGGTTGGCTTAGGCATAG
** * ** * * *
14736266 GCAGTTCATTCCATGTCTAAGCCTCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCATGT
1 G-AGTTCATTCCATGTCTAAGATTGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * * * * * *
14736331 AGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTCTGGCCGGGTCAGTGCCCAT-C
65 AG-GGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTAC
* * *
14736395 GCTCGTTTCGTGGGTTGACTTAGGCATACA
128 GCTCGTTTCATGGGTTGGCTTAGGCATA-G
* * * * *** * ** *
14736425 AAGTTCATTCCCA-GTCTAAGATTGGACCAGATCGAGGGTTACAGCAGCAGGATCGACAAAACGC
1 GAGTTCATT-CCATGTCTAAGATTGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* *
14736489 AGGGGGGATCGGGCCTATCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCACCCGTACGC
65 AGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGC
14736554 TCGTTTCATGGGTTGGCTTAGGCATATG
130 TCGTTTCATGGGTTGGCTTAGGCATA-G
14736582 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
14736602 CATACGGAGT
Statistics
Matches: 266, Mismatches: 61, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 40 0.15
157 108 0.41
158 70 0.26
159 48 0.18
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (156 bp):
GAGTTCATTCCATGTCTAAGATTGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTA
GGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCT
CGTTTCATGGGTTGGCTTAGGCATAG
Found at i:14736625 original size:26 final size:26
Alignment explanation
Indices: 14736575--14736627 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14736565 GTTGGCTTAG
* *
14736575 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
14736601 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
14736627 G
1 G
14736628 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:14736972 original size:26 final size:26
Alignment explanation
Indices: 14736942--14736994 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14736932 GTTGACTTAG
14736942 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
14736968 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14736994 G
1 G
14736995 TTCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14737273 original size:159 final size:160
Alignment explanation
Indices: 14737072--14737476 Score: 408
Period size: 159 Copynumber: 2.5 Consensus size: 160
14737062 ATCGACTTAC
* * * * *
14737072 GCATTCTGCCTCTCCGATTGGCTGAGCGCCCGGACACTCGTTTCATGGGTTGCCTTAGGCATAGG
1 GCATTATGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACG
* ** * **
14737137 GAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGCGGTAGCGGGATCGACAGCACGT
66 GAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACAC
* * * * *
14737201 A-GAGGGGAATC-AGGCTGATTCTCGGCTTGT
131 AGGAGGGG-ATCGA-CCCGATCCCCGGCTTGA
* * * * * * * ** **
14737231 GTATTATGCCTCTTCGGTAGGCTTAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTATACATATT
1 GCATTATGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACG
* ** * *
14737296 GAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGTGACAGCAGGATCGATAGCACA
66 GAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACA
14737359 CAGGAGGGGATCGACCCGATCCCCGGCTTGA
130 CAGGAGGGGATCGACCCGATCCCCGGCTTGA
* * * *
14737390 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATAGGTT-CGCTCAGGCATAC
1 GCATTATGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGC-CTTAGGCATAC
14737454 GGAGTTCATTCCATGTCTAAGCA
65 GGAGTTCATTCCATGTCTAAGCA
14737477 TACGGAGTTC
Statistics
Matches: 193, Mismatches: 46, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
158 6 0.03
159 176 0.91
160 11 0.06
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (160 bp):
GCATTATGCCTCTCCGATAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACAC
AGGAGGGGATCGACCCGATCCCCGGCTTGA
Found at i:14737478 original size:26 final size:26
Alignment explanation
Indices: 14737448--14737500 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14737438 GTTCGCTCAG
14737448 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14737474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14737500 G
1 G
14737501 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14738707 original size:159 final size:159
Alignment explanation
Indices: 14738247--14738711 Score: 438
Period size: 159 Copynumber: 2.9 Consensus size: 159
14738237 GAACCGGACT
* * * * *
14738247 GAGGGTTGTGGCAGTAGGATCAACGGCACGCAG-GGGGGAGCGGGTCGATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTACGCAT
* * * * * * * * * * *
14738311 TCTACCTCTCGGGCCGACTGAGCGCCCGCACACCCGTTTTGTAGGTTGGCTTAGTCATAGGGAGT
66 TATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * *
14738376 TCATTCCATGTCTAAGCCCCAGTCGGATC
131 TCATTCCATGTCTAAGCACCAGACGAACC
* ** * * **
14738405 GAGGGTTGTGGCAGT-GAGACCGGTAGCACGCAAAGAGGGACC-GAACTGAT-CCTCGGCTTACG
1 GAGGGTTGTGGCAGTAG-GATCGACAGCACGCAGAGGGGGACCGGGTC-GATCCCT-GGCTTACG
* * * * * * * * *
14738467 CATTAGGCCTCTCCGATCGACTCAGCAGCCGTATGCTCATTTCATGGGTTGACTTAGGCATACGG
63 CATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
14738532 AGTTCATTCCCA-GTCTACG-ATCAGACTGAACC
128 AGTTCATT-CCATGTCTAAGCACCAGAC-GAACC
* * *
14738564 GAGGGTTGTGACAGTAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTACACAT
1 GAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTACGCAT
* ** *
14738629 TTTGCCTCTCCGACCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
14738694 TCATTCCATGTCTAAGCA
131 TCATTCCATGTCTAAGCA
14738712 TACGATGTTC
Statistics
Matches: 234, Mismatches: 62, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 1 0.00
158 36 0.15
159 187 0.80
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTACGCAT
TATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCACCAGACGAACC
Found at i:14738721 original size:26 final size:26
Alignment explanation
Indices: 14738683--14738735 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14738673 GTTGGCTTAG
14738683 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14738709 GCATAC-GATGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
14738735 G
1 G
14738736 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14738885 original size:184 final size:185
Alignment explanation
Indices: 14738524--14738894 Score: 487
Period size: 184 Copynumber: 2.0 Consensus size: 185
14738514 GTTGACTTAG
* **
14738524 GCATACGGAGTTCATTCCCAGTCTACGATCAGACTGAACCGAGGGTTGTGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGACAGTAGGATCGACA
* * * * *
14738589 GCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTACACATTTTGCCTCTCCGACCGGTTGAGCAC
66 GCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACACATTCTACCTCTCCGACCGGTTGAGCAC
* *
14738654 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCACACGCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCATGTCTAA
* * *
14738709 GCATAC-GATGTTCATTCCCAGTCTAAGATTAGA-TCGGACCGAGGGTTACGGCAGTAGGATCGA
1 GCATACGGA-GTTCATTCCCAGTCTAAGATCAGACT-GAACCGAGGGTTACGACAGTAGGATCGA
* * * * * **
14738772 CAGCATGCAG-GGGGGATCGGGCCGATCCCTGACTTACGCATTCTACCTTTTCGGTCGGTTGAGC
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACACATTCTACCTCTCCGACCGGTTGAGC
* * * *
14738836 GCCCGCATGCTCGTTTCGTGGGTTGACTTTGGCAGACGGAGTTCATTCCATGTCTAA
129 ACCCACACGCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCATGTCTAA
14738893 GC
1 GC
14738895 CCCAGCCAGA
Statistics
Matches: 160, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
184 100 0.62
185 60 0.38
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGACAGTAGGATCGACA
GCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACACATTCTACCTCTCCGACCGGTTGAGCAC
CCACACGCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCATGTCTAA
Found at i:14739080 original size:26 final size:26
Alignment explanation
Indices: 14739051--14739103 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14739041 GTTGACCTAG
*
14739051 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
14739077 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14739103 G
1 G
14739104 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14739409 original size:158 final size:158
Alignment explanation
Indices: 14739148--14739598 Score: 435
Period size: 158 Copynumber: 2.8 Consensus size: 158
14739138 GGTAGCACGC
* * * * * ** *
14739148 AGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGTTGAGCGCCCGCACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTTCGCATTCTGCCTCTCTGA-CGGCTCAATGCCCGAACGC
* * * *
14739213 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGG
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
* * **
14739278 GTTGTGGCAGCGAGA-CTGGCAGCACACAG
130 GTTGTGACAGCAAGATC-AACAGCACACAG
* * *
14739307 AGGGGGACCGGGCCGATCCTCGGCTTTCCCATTATGCCTCTCTGACGGCTCAATGCCCGAACGCT
1 AGGGGGACCGGGCCGATCCCCGGCTTTCGCATTCTGCCTCTCTGACGGCTCAATGCCCGAACGCT
* * * * ** ** * * *
14739372 CGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTATGATCGGATCAGACCAAGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGG
* * *
14739436 GTTGCGACAGTAAGATCAACAGCACGCAG
130 GTTGTGACAGCAAGATCAACAGCACACAG
* * * * * * *
14739465 -GGGGGACCAGGCCGATCCCCAGC-TTCTGCATTCTGCCTCTCCGGTCAGCCTC-TTGCCCGTAC
1 AGGGGGACCGGGCCGATCCCCGGCTTTC-GCATTCTGCCTCT-CTGAC-GGCTCAATGCCCGAAC
* *
14739527 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGA
63 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGA
14739592 GGGTTGT
128 GGGTTGT
14739599 CGTAGCAGGA
Statistics
Matches: 229, Mismatches: 57, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
156 3 0.01
157 34 0.15
158 145 0.63
159 47 0.21
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGGGGACCGGGCCGATCCCCGGCTTTCGCATTCTGCCTCTCTGACGGCTCAATGCCCGAACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
TTGTGACAGCAAGATCAACAGCACACAG
Found at i:14739764 original size:26 final size:26
Alignment explanation
Indices: 14739734--14739786 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14739724 GTTGACTTAG
14739734 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
14739760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14739786 G
1 G
14739787 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14740054 original size:157 final size:158
Alignment explanation
Indices: 14739760--14740101 Score: 354
Period size: 157 Copynumber: 2.2 Consensus size: 158
14739750 CTCAGTCTAA
* * * * **
14739760 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTGCGACAGCAGCATCGACA
* * * *
14739825 GCACACAGGGGGGACTGGACCGATCCTCGGCTTGCGCATTTTGCCTCTCCGGCCAGCTTAATGCC
66 GCACACAGGGGGGACTGGACCGATCCGCGGCTTGCACATTCTGCCTCTCCGACCAGCTTAATGCC
* *
14739890 CGAACGCTCGTTTCATGTGTTGACTT-AG
131 CGAACGCTCATTTCATGGGTTG-CTTGAG
* * * * *
14739918 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGTATTGCGGCAGCAGCATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTGCGACAGCAGCATCGACA
* * * * * *
14739983 GCATATA-GGGGGA-TCGGCCCGATCCGCGGCTTGCACATTCTGCCTCTCCGATC-GGTTGA-GC
66 GCACACAGGGGGGACT-GGACCGATCCGCGGCTTGCACATTCTGCCTCTCCGACCAGCTTAATG-
* * *
14740044 ACCCGCACGCTCATTTCGTGGGTTGGTTGAG
129 -CCCGAACGCTCATTTCATGGGTTGCTTGAG
*
14740075 GCATACGGAGGTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
14740102 CATACGGAGT
Statistics
Matches: 151, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
155 1 0.01
156 10 0.07
157 81 0.54
158 59 0.39
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTGCGACAGCAGCATCGACA
GCACACAGGGGGGACTGGACCGATCCGCGGCTTGCACATTCTGCCTCTCCGACCAGCTTAATGCC
CGAACGCTCATTTCATGGGTTGCTTGAG
Found at i:14740063 original size:683 final size:682
Alignment explanation
Indices: 14738844--14740092 Score: 1582
Period size: 683 Copynumber: 1.8 Consensus size: 682
14738834 GCGCCCGCAT
*
14738844 GCTCGTTTCGTGGGTTGACTTTGGCAGACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* * * * * * *
14738909 GTGTTGTGGTAGTAGGACTGACAGCGAGATCAATAGAACATAGTGGAGGATCAGGCTGATCCCCG
66 GGGTTGTCGTAGCAGGACTGACAGCGAGATCAACAGAACACAGAGGAGGACCAGGCTGATCCCCG
* * *
14738974 GATTACGCATTATGCCTCTCCTGTCGGCCTCTTCGGCTGGCTGAGCGCCCGCACGCTTGTTCCAT
131 AATTACGCATTATGCCTCTCCGGTCGACCTCTTCGGCTGGCTGAGCGCCCGCACGCTTGTTCCAT
* * *
14739039 GGGTTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCTAGTCTAAG
196 GGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* ** *
14739104 ATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGGGGATCGAGCCGATCCCC
261 ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACACAGGGGGATCGAGCCGATCCCC
* * * * * *
14739169 GGCTTGCGCATTCTGCCTCTCTGATCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
326 GGCTTGCGCATTCTGCCTCTCCGACCGCTTGAACGCCCGAACGCCCGTTTCATGGGTTGACTTAG
** * * * *
14739234 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGAGACTGGCA
391 GCATACAGAGTTCATTCCATGTCTAAGCACCAACCGGACTGAGGATTGCGGCAGCGAGACTGACA
* * * * * **
14739299 GCACACAGAGGGGGACCGGGCCGATCCTCGGCTTTCCCATTATGCCTCTCTGACGGCTCAATGCC
456 G-ACACAGAGGGGGACCGGCCCGATCCGCGGCTTGCACATTATGCCTCTCCGACGGCTCAACACC
* * *
14739364 CGAACGCTCGTTTCGTGGTTTGACTT-AGGCATACAGAGTTCATTCCCAGTCTATGATCGGATCA
520 CGAACGCTCATTTCGTGGGTTG-CTTGAGGCATACAGAGGTCATTCCCAGTCTATGATCGGATCA
14739428 GACCAAGGGTTGCGACAGTAAGATCAACAGCACGCAGGGGGGACCAGGCCGATCCCCAGCTTCTG
584 GACCAAGGGTTGCGACAGTAAGATCAACAGCACGCAGGGGGGACCAGGCCGATCCCCAGCTTCTG
14739493 CATTCTGCCTCTCCGGTCAGCCTCTTGCCCGTAC
649 CATTCTGCCTCTCCGGTCAGCCTCTTGCCCGTAC
* * **
14739527 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
** * * * * *
14739592 GGGTTGTCGTAGCAGGACTGACAGCGAGATCGGCAGCACGCAGAGGGGGACCGGGTTGATCCCC-
66 GGGTTGTCGTAGCAGGACTGACAGCGAGATCAACAGAACACAGAGGAGGACCAGGCTGATCCCCG
* * * *
14739656 AACTTGCGCATTATGCCTCTTCGGTCGACCTC-TCTGGTTGGCTGAGCGCCCGCACGCTTGTTTC
131 AA-TTACGCATTATGCCTCTCCGGTCGACCTCTTC-GGCTGGCTGAGCGCCCGCACGCTTGTTCC
* * *
14739720 ATGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
194 ATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * * *
14739785 AGATCGGACCGGACTGAGGGTTGCGACAGTAGGATCGGTAGCACACAGGGGGGACTGGA-CCGAT
259 AGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACACA-GGGGGA-TCGAGCCGAT
* * * * * *
14739849 CCTCGGCTTGCGCATTTTGCCTCTCCGGCCAGCTT-AATGCCCGAACGCTCGTTTCATGTGTTGA
322 CCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCTTGAACGCCCGAACGCCCGTTTCATGGGTTGA
* * * *
14739913 CTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATTGAGTATTGCGGCAGC-AG
386 CTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCA-ACCGGACTGAGGATTGCGGCAGCGAG
* * * *
14739975 -CATCGACAG-CATATAGGGGGATCGGCCCGATCCGCGGCTTGCACATTCTGCCTCTCCGATCGG
449 AC-T-GACAGACACAGAGGGGGACCGGCCCGATCCGCGGCTTGCACATTATGCCTCTCCGA-CGG
* * * * * *
14740038 TTGAGCACCCGCACGCTCATTTCGTGGGTTGGTTGAGGCATACGGAGGTCATTCC
511 CTCAACACCCGAACGCTCATTTCGTGGGTTGCTTGAGGCATACAGAGGTCATTCC
14740093 ATGTCTAAGC
Statistics
Matches: 473, Mismatches: 82, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
682 47 0.10
683 310 0.66
684 107 0.23
685 9 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (682 bp):
GCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
GGGTTGTCGTAGCAGGACTGACAGCGAGATCAACAGAACACAGAGGAGGACCAGGCTGATCCCCG
AATTACGCATTATGCCTCTCCGGTCGACCTCTTCGGCTGGCTGAGCGCCCGCACGCTTGTTCCAT
GGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACACAGGGGGATCGAGCCGATCCCC
GGCTTGCGCATTCTGCCTCTCCGACCGCTTGAACGCCCGAACGCCCGTTTCATGGGTTGACTTAG
GCATACAGAGTTCATTCCATGTCTAAGCACCAACCGGACTGAGGATTGCGGCAGCGAGACTGACA
GACACAGAGGGGGACCGGCCCGATCCGCGGCTTGCACATTATGCCTCTCCGACGGCTCAACACCC
GAACGCTCATTTCGTGGGTTGCTTGAGGCATACAGAGGTCATTCCCAGTCTATGATCGGATCAGA
CCAAGGGTTGCGACAGTAAGATCAACAGCACGCAGGGGGGACCAGGCCGATCCCCAGCTTCTGCA
TTCTGCCTCTCCGGTCAGCCTCTTGCCCGTAC
Found at i:14740115 original size:26 final size:26
Alignment explanation
Indices: 14740075--14740127 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14740065 GTTGGTTGAG
14740075 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
*
14740101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
14740127 G
1 G
14740128 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:14740755 original size:159 final size:158
Alignment explanation
Indices: 14740372--14740768 Score: 401
Period size: 159 Copynumber: 2.5 Consensus size: 158
14740362 CCCAGTCTAA
* * **
14740372 GCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAAGGTTGCGGCAATAGGATC-AGC
1 GCATATGGAGTTCATT-CCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGA-C
* * * * * *
14740436 AGCATGC--AGGGGGATCGAGCCGATCCTCGACTTGTGCATTCTACCTCTTCGGCTGGCTGAGCG
64 AGCATGCAGAGGGGGACCGAGCCAATCCTCGACTTGCGCATTATACCTCTTCGGCTGGCTCAGCA
* *
14740499 CCCACACGCCCATTTCGTGGGTTGGCTTGG
129 CCCACACGCCCATTTCGTGGGTTGACTTAG
* * * * * ** * * * *
14740529 GCATAGGGAGTTCATTCCATGTCTAAGCCTCAG-CCGAACCGAGGGTTATGGTAGCGGGACCGGC
1 GCATATGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * *
14740593 AGCACGCAGAGGGGGACCGGGCCAATCCCTGGA-TTGCGCATTATGCCTCTTCGGCTGGCTCAGC
64 AGCATGCAGAGGGGGACCGAGCCAAT-CCTCGACTTGCGCATTATACCTCTTCGGCTGGCTCAGC
* * *
14740657 ACCCGCACGCTCATTTCGTGGGTTGACTTAT
128 ACCCACACGCCCATTTCGTGGGTTGACTTAG
* *
14740688 GCATATGGAGTTCAATTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTC-ATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
*
14740753 GCATGTAG-GGGGGACC
65 GCATGCAGAGGGGGACC
14740769 AAACTGATCC
Statistics
Matches: 187, Mismatches: 45, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.02
157 45 0.24
158 16 0.09
159 113 0.60
160 10 0.05
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
CATGCAGAGGGGGACCGAGCCAATCCTCGACTTGCGCATTATACCTCTTCGGCTGGCTCAGCACC
CACACGCCCATTTCGTGGGTTGACTTAG
Found at i:14740897 original size:26 final size:26
Alignment explanation
Indices: 14740846--14740898 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14740836 GTTGGCTTAG
*
14740846 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
14740872 GCATATGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
14740898 G
1 G
14740899 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:14745429 original size:158 final size:156
Alignment explanation
Indices: 14744937--14745755 Score: 466
Period size: 159 Copynumber: 5.2 Consensus size: 156
14744927 AACTTCGTAT
* * * *
14744937 TCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAC-GAGTGTGCGGGTGCTC
1 TCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGCGCTC
* * * * * * * * * *
14745000 AGCC-GACCGAAGAGCCAGAATGCGTAACCCGAGGACTGGCCCGGTCCCCCCCTGTGAGCTGTCG
64 A-CCTG-CTGGAGAGGCAGAATGCGTAA-GCGGGGATTGGCCCGAT-CCCTCCTGCGTGCTGTCG
* * * * *
14745064 ATCCTGCTGTC-GCAACCCTCGATCCGGTCCGA
125 ATCCTACTGCCAGTAACCCTCG-TCCAGTCTGA
*** * * * * * ** *
14745096 TCTTAGACTGGGAATGAACTTAGTATGACTAAGTCAACCCATGAAA-TGAGCGTGCAGGCAATGA
1 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGCGCT-C
* * * * * ** * * ** *
14745160 ACC-GATCGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGGTCCCCCTCTAAGTGCTATCGA
64 ACCTGCT-GGAGAGGCAGAATGCGTAAG-CGGGGATTGGCCCGATCCCTC-CTGCGTGCTGTCGA
* * * *
14745224 TCCCACTGCCA-CAACCCTCGGTCCGGT-TGGG
126 TCCTACTGCCAGTAACCCTC-GTCCAGTCT-GA
* * * *
14745255 GCTTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGTTCA
1 TCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCA
* * * * *
14745319 GCCTGCCGGAGAGGTAGAATGCATAAGTCGGGGATCGGCCCAATCCCTCCTGCGTGCTGTCGATC
65 -CCTGCTGGAGAGGCAGAATGCGTAAG-CGGGGATTGGCCCGATCCCTCCTGCGTGCTGTCGATC
*
14745384 CTACTG-CAGTAACCCTCTGTCCGGTCTGA
128 CTACTGCCAGTAACCCTC-GTCCAGTCTGA
* * ** * * * *
14745413 TCTTAGACTGGGAATGAACTTCGTATGCAAAAGTCAACCCA-AAAAC-GAGCGTACGGGCGCTGA
1 TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGCGCT-C
* * * * * ** * * * *
14745476 ACCGGCTGAAGA-GCATAATACGCAAGCCAAGGATTAGCCCGATCCCCTTCTGCTTGCTGTCGGT
64 ACCTGCTGGAGAGGCAGAATGCGTAAG-CGGGGATTGGCCCGAT-CCCTCCTGCGTGCTGTCGAT
* *
14745540 CCCACTGCCA-TAACCCTCGATCCAG-CTGGG
127 CCTACTGCCAGTAACCCTCG-TCCAGTCT-GA
* * *
14745570 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCA
1 TCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCA
* * * **
14745634 ACTGGTTGGAGAGGCAGAATGCGTAAGCTGGGGATTGGCCCGATCCCCCCTGCGTGCTACCGATC
65 CCT-GCTGGAGAGGCAGAATGCGTAAGC-GGGGATTGGCCCGATCCCTCCTGCGTGCTGTCGATC
* *
14745699 CTACTGTC-GTAACCCTCGGTCCAGTCCGA
128 CTACTGCCAGTAACCCTC-GTCCAGTCTGA
* *
14745728 TCTTAGACTGGGAATTAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCCTATGC
14745756 TTAGACTGGG
Statistics
Matches: 499, Mismatches: 129, Indels: 65
0.72 0.19 0.09
Matches are distributed among these distances:
156 25 0.05
157 96 0.19
158 155 0.31
159 217 0.43
160 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
TCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAC
CTGCTGGAGAGGCAGAATGCGTAAGCGGGGATTGGCCCGATCCCTCCTGCGTGCTGTCGATCCTA
CTGCCAGTAACCCTCGTCCAGTCTGA
Found at i:14745593 original size:315 final size:316
Alignment explanation
Indices: 14744938--14745755 Score: 954
Period size: 315 Copynumber: 2.6 Consensus size: 316
14744928 ACTTCGTATT
* * *
14744938 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAC-GAGTGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGTGCTCAG
* * * * * * *
14745002 CC-GACCGAAGAGCCAGAATGCGTAACCCGAGGA-CTGGCCCGGTCCCCCCCTGTGAGCTGTCGA
65 CCTG-CCGGAGAGGCAGAATGCGTAA-GCGGGGATC-GGCCCGAT-CCCCCCTGCGTGCTGTCGA
* * * *
14745065 TCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTAGTATG-ACTAAG
126 TCCTACTGTCGTAACCCTCG-TCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCACAAAG
* * * * **
14745129 TCAACCCATGAAATGAGCGTGCAGGCAATGAACCGATCGAAGAGGCATAATACGCAAGTCGGGGA
190 TCAACCCATAAAACGAGCGTACAGGCAATGAACCGATCGAAGAGGCATAATACGCAAGCCAAGGA
* * * *
14745194 TCAGCCCGGTCCCCCTCTAAGTGCTATCGATCCCACTGCCACAACCCTCGGTCCGGTTGGGG
255 TCAGCCCGATCCCCCTCTAAGTGCTATCGATCCCACTGCCACAACCCTCGATCCAGCTGGGG
* *
14745256 CTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGTTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAGC
* * * *
14745321 CTGCCGGAGAGGTAGAATGCATAAGTCGGGGATCGGCCCAATCCCTCCTGCGTGCTGTCGATCCT
66 CTGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
*
14745386 ACTG-CAGTAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCA-AAAGTCA
130 ACTGTC-GTAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCACAAAGTCA
* ** * *
14745449 ACCCA-AAAACGAGCGTACGGGCGCTGAACCG-GCTGAAGA-GCATAATACGCAAGCCAAGGATT
193 ACCCATAAAACGAGCGTACAGGCAATGAACCGATC-GAAGAGGCATAATACGCAAGCCAAGGATC
* *** * * *
14745511 AGCCCGATCCCCTTCTGCTTGCTGTCGGTCCCACTGCCATAACCCTCGATCCAGCTGGGG
257 AGCCCGATCCCCCTCTAAGTGCTATCGATCCCACTGCCACAACCCTCGATCCAGCTGGGG
* * * *
14745571 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCA-A
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAGC
** * **
14745635 CTGGTTGGAGAGGCAGAATGCGTAAGCTGGGGATTGGCCCGATCCCCCCTGCGTGCTACCGATCC
66 CT-GCCGGAGAGGCAGAATGCGTAAGC-GGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
14745700 TACTGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATTAACTCCGTATGC
129 TACTGTCGTAACCCTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
14745756 TTAGACTGGG
Statistics
Matches: 426, Mismatches: 63, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
314 3 0.01
315 227 0.53
316 27 0.06
317 77 0.18
318 88 0.21
319 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAGC
CTGCCGGAGAGGCAGAATGCGTAAGCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTA
CTGTCGTAACCCTCGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCACAAAGTCAACC
CATAAAACGAGCGTACAGGCAATGAACCGATCGAAGAGGCATAATACGCAAGCCAAGGATCAGCC
CGATCCCCCTCTAAGTGCTATCGATCCCACTGCCACAACCCTCGATCCAGCTGGGG
Found at i:14745608 original size:157 final size:158
Alignment explanation
Indices: 14745166--14745716 Score: 436
Period size: 158 Copynumber: 3.5 Consensus size: 158
14745156 ATGAACCGAT
* * ** *
14745166 CGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGGTCCCCCTCTAAGTGCTATCGATCCCACT
1 CGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCCCACT
* * *
14745231 GCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCATAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
14745296 CGAAACGGACGTGCGGGTGTTCAGCCTGC
130 CAAAACGGACGTACGGGCGCTCAACCGGC
* * * * ** * * * *
14745325 CGGAGAGGTAGAATGCATAAGTCGGGGATCGGCCCAAT-CCCTCCTGCGTGCTGTCGATCCTACT
1 CGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCCCACT
** * * ** *
14745389 G-CAGTAACCCTCTGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCAAAAGTCAAC
66 GCCA-TAACCCTC-GTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
*
14745451 CCA-AAAAC-GAGCGTACGGGCGCTGAACCGGC
127 CCACAAAACGGA-CGTACGGGCGCTCAACCGGC
* * ** * * *
14745482 TGAAGA-GCATAATACGCAAGCCAAGGATTAGCCCGATCCCCTTCTGCTTGCTGTCGGTCCCACT
1 CGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCCCACT
*
14745546 GCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GCCATAACCCTCG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * ** * *
14745611 CGAAACGGGCGTGTGGGCGCTCAACTGGT
130 CAAAACGGACGTACGGGCGCTCAACCGGC
* * * * * ** * ** *
14745640 TGGAGAGGCAGAATGCGTAAG-CTGGGGATTGGCCCGATCCCC-CCTGCGTGCTACCGATCCTAC
1 CGAAGAGGCATAATACGCAAGTC-GGGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCCCAC
* *
14745703 TGTCGTAACCCTCG
65 TGCCATAACCCTCG
14745717 GTCCAGTCCG
Statistics
Matches: 299, Mismatches: 80, Indels: 27
0.74 0.20 0.07
Matches are distributed among these distances:
156 25 0.08
157 94 0.31
158 122 0.41
159 58 0.19
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCCCACT
GCCATAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAACGGACGTACGGGCGCTCAACCGGC
Found at i:14745758 original size:26 final size:26
Alignment explanation
Indices: 14745729--14745781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14745719 CCAGTCCGAT
*
14745729 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14745755 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14745781 C
1 C
14745782 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14746003 original size:171 final size:171
Alignment explanation
Indices: 14745697--14746025 Score: 444
Period size: 171 Copynumber: 1.9 Consensus size: 171
14745687 GTGCTACCGA
* * *
14745697 TCCTACTGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGAC
1 TCCTACCGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * *
14745762 TGGGGATGAACTCCGTATGCGTAAGTCAACCCATGAAACAAGCGTGCAGGCGTTCAGCCGACCAG
66 TGGAGATGAACTCCGTATGCCTAAGCCAACACATGAAACAAGCATGCAGGAGCTCAGCCGACCAG
* **
14745827 AGAGGCAGGATGCGTAAGCCGAGGATCGAACGGGTGGTAGG
131 AGAGGCAGAATGCACAAGCCGAGGATCGAACGGGTGGTAGG
* *
14745868 TCCTACCGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTACCGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** * * *
14745933 ATTGAGA-GAACTCCGTATGCCTAAGCCAACACATGAAATGAGCATGCGGGAGCTCAGTCGACCG
66 -TGGAGATGAACTCCGTATGCCTAAGCCAACACATGAAACAAGCATGCAGGAGCTCAGCCGACCA
*
14745997 GAGAGGCAGAATGCACAAGTCGAGGATCG
130 GAGAGGCAGAATGCACAAGCCGAGGATCG
14746026 GCCCGATCCC
Statistics
Matches: 135, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
171 131 0.97
172 4 0.03
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (171 bp):
TCCTACCGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGAGATGAACTCCGTATGCCTAAGCCAACACATGAAACAAGCATGCAGGAGCTCAGCCGACCAG
AGAGGCAGAATGCACAAGCCGAGGATCGAACGGGTGGTAGG
Found at i:14746335 original size:160 final size:157
Alignment explanation
Indices: 14745940--14746429 Score: 377
Period size: 159 Copynumber: 3.1 Consensus size: 157
14745930 GACATTGAGA
* ** ** * *
14745940 GAACTCCGTATGCCTAAGCCAACACATGAAATGAGCATGCGGGAGCTCAGTCGACCGGAGAGGCA
1 GAACTCCGTATGCCTAAGCCAACCCACAAAATGAATATAC-GG-GCTCAGTCGGCCGGAGAGGCA
* * * * * *
14746005 GAATGCACAAGTCGAGGATCGGCCCGATCCCACCCTATGTGCTGTCGATCCTGCTGCCGCAACCC
64 GAATGCGCAAGCCGAGGATCGACCCGATCCCACCCTATGTGCTGTCGATCCCGCTACCACAACCC
* * *
14746070 TTAGTTCGGTTCTATCTTAGACTAGGAAT
129 TCAGTTCCGTACTATCTTAGACTAGGAAT
* * * * * * * *
14746099 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGCGTTGAGCCAGCCAGAGAGGCA
1 GAACTCCGTATGCCTAAGCCAACCCACAAAATGAATATACGGGC--TCAGTCGGCCGGAGAGGCA
* * * * *
14746164 TAATACGCAAGCCGATGATCGACCCGATCCC-CCTCTGTGTGCTTTCGATCCCGCTACCACAACC
64 GAATGCGCAAGCCGAGGATCGACCCGATCCCACC-CTATGTGCTGTCGATCCCGCTACCACAACC
* *
14746228 CTCCGTTCCG-ACTGTGGCTTAGAC-ATGGAAT
128 CTCAGTTCCGTACTAT--CTTAGACTA-GGAAT
14746259 GAACTCTC-TATGCCTAAGCCAACCCACAAAATGGACATATA-GGTGCTCAGTCGGCCGGAGAGG
1 GAACTC-CGTATGCCTAAGCCAACCCACAAAAT-GA-ATATACGG-GCTCAGTCGGCCGGAGAGG
* * * * ** * * *
14746322 AAGAATGCGCAAGCCGGGGATCGGCTC-AGTCCC-CCCTGCGTGCTGCCGATCCTGC-AGTCACA
62 CAGAATGCGCAAGCCGAGGATCGACCCGA-TCCCACCCTATGTGCTGTCGATCCCGCTA-CCACA
* * * * *
14746384 ACCCTCGGTT-CGATCCGATCGTAGACTGGGAAT
125 ACCCTCAGTTCCG-TACTATCTTAGACTAGGAAT
14746417 GAACTCCGTATGC
1 GAACTCCGTATGC
14746430 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 53, Indels: 33
0.75 0.15 0.09
Matches are distributed among these distances:
157 3 0.01
158 32 0.12
159 136 0.52
160 81 0.31
161 5 0.02
162 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GAACTCCGTATGCCTAAGCCAACCCACAAAATGAATATACGGGCTCAGTCGGCCGGAGAGGCAGA
ATGCGCAAGCCGAGGATCGACCCGATCCCACCCTATGTGCTGTCGATCCCGCTACCACAACCCTC
AGTTCCGTACTATCTTAGACTAGGAAT
Found at i:14746434 original size:26 final size:26
Alignment explanation
Indices: 14746405--14746478 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
14746395 GATCCGATCG
*
14746405 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGGATGAACTCCGTATGCT
**
14746431 TAGACTGGGGATGAACTCTATATGCT
1 TAGACTGGGGATGAACTCCGTATGCT
*
14746457 TAGATTGGGGATGAACTCCGTA
1 TAGACTGGGGATGAACTCCGTA
14746479 CGCCTAAGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGGATGAACTCCGTATGCT
Found at i:14747582 original size:159 final size:158
Alignment explanation
Indices: 14747188--14747605 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 158
14747178 AACTCCGTAT
* *
14747188 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
14747253 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTCAGTCCCTCATGTGTACTATCAATCT
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCAGTCCCTCATGAGTACTATCAATCC
* * * *
14747318 TGATGCCGTAACCCTCGGTCTGATCCGA
131 CGATGCCATAACCCTCAGTCTGATCAGA
* * ** * * * * * * *
14747346 TCCTAGAC-TGGGAATGAACTCCGTATGTATAAGTCAACCCACGTAACGAGAGTACGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14747410 GCCAACCGAAGAGGCATAATGCACAAGCCGAGGATCGGC-CTGGTCCCCGTC-TGAGTGCT-GCT
65 GCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTC-AGT-CCC-TCATGAGTACTATC-
** * * *
14747472 GGTCCCGCTGCCATAACCCTCAGTCTG-GCTAGG
126 AATCCCGATGCCATAACCCTCAGTCTGATC-AGA
* *
14747505 GCTTAGACATGGAATGAACTGCC-TATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
14747569 GCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCG
65 GCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCG
14747606 ACCCGATCTC
Statistics
Matches: 200, Mismatches: 52, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 87 0.44
159 106 0.53
160 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCAGTCCCTCATGAGTACTATCAATCC
CGATGCCATAACCCTCAGTCTGATCAGA
Found at i:14747715 original size:26 final size:26
Alignment explanation
Indices: 14747677--14747729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14747667 CCAGTCCGAT
*
14747677 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14747703 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14747729 C
1 C
14747730 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14749171 original size:26 final size:26
Alignment explanation
Indices: 14749142--14749193 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14749132 TCCGGTCTGA
14749142 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
14749168 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
14749194 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:14749891 original size:26 final size:26
Alignment explanation
Indices: 14749855--14749907 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14749845 GGCTCAAAAT
14749855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14749881 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14749907 C
1 C
14749908 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14750306 original size:170 final size:171
Alignment explanation
Indices: 14750066--14750373 Score: 401
Period size: 170 Copynumber: 1.8 Consensus size: 171
14750056 CCGACTGGGG
* * * *
14750066 CTTAGACATGGAATGAACTCCGTATGCCAAAGTCAAACCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCAAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAAC
* * * *
14750131 CGGTC-GA-AAGGCAGAATGCGCAAG-CTGAGGATCGGCTCGATCCCC-CCTTACATACTGGCAA
66 CGGTCGGAGAA-GCAGAATGCACAAGTC-AAGGATCGGCCCAATCCCCTCC-TACATACTGGCAA
14750192 TCCTACTGCTGGTCCTACTACAGCAACCTTTGGTCCGGTCTGAT
128 TCCTACTGCTGGTCCTACTACAGCAACCTTTGGTCCGGTCTGAT
* * * *
14750236 CTTAGAC-TGGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCATATGCCAAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAA
* * * *
14750300 CCGGTCGGAGAAGCAGAATGCACAAGTCAAGGATCGGCCCAATCCCCTCCTGCGTGCTGTCAATC
65 CCGGTCGGAGAAGCAGAATGCACAAGTCAAGGATCGGCCCAATCCCCTCCTACATACTGGCAATC
14750365 CTACTGCTG
130 CTACTGCTG
14750374 CAACCCTTAG
Statistics
Matches: 117, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
169 1 0.01
170 60 0.51
171 51 0.44
172 5 0.04
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (171 bp):
CTTAGACATGGAATGAACTCCATATGCCAAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAAC
CGGTCGGAGAAGCAGAATGCACAAGTCAAGGATCGGCCCAATCCCCTCCTACATACTGGCAATCC
TACTGCTGGTCCTACTACAGCAACCTTTGGTCCGGTCTGAT
Found at i:14750493 original size:159 final size:159
Alignment explanation
Indices: 14750215--14750738 Score: 520
Period size: 159 Copynumber: 3.3 Consensus size: 159
14750205 CCTACTACAG
* * ** * **
14750215 CAACCTTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCCACGAA
1 CAACCCTTGGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * ** *
14750280 ACGAGCGTACGGGCGCTCAGCCGGTCGGAGAA-GCAGAATGCACAAGTCAAGGATCGGCCCAATC
66 ACGAGCGTGCGGGCGCTCAGCCGATC-GAAAAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATC
* * **
14750344 CCCTCCTGCGTGCTGTCAATCCTACTGCTG
130 CCCTCCTGCGTGCTGTCGATCCTGCTGCCA
* * *
14750374 CAACCCTTAGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTTGGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * *
14750439 ATGAGTGTGCGGGTGCTGAGTCGATCGAAAAGGCATAATGTGCAAGCCGGGGATCGGCCCGAT-C
66 ACGAGCGTGCGGGCGCTCAGCCGATCGAAAAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCC
* * *
14750503 CCTCTCTGCATGCTGTCGGTCCCGCTGCCA
131 CCTC-CTGCGTGCTGTCGATCCTGCTGCCA
* * ** * *
14750533 CAACCCTCGGTTCGG-CTGAGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
1 CAACCCTTGGTTCGGTC-CAATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * ** *
14750596 AAACGAGCGTGCGGGCGCTCAGCCGATC-AGAGAGGCAAAATGCGCAAGCTGGGGATCGGCTTGG
64 AAACGAGCGTGCGGGCGCTCAGCCGATCGA-AAAGGCAAAATGCGCAAGCCGGGGATCGGCCCGA
*
14750660 TCCCC-CCTGCGTGCTGTCGATCCTGCTACCA
128 TCCCCTCCTGCGTGCTGTCGATCCTGCTGCCA
* * * *
14750691 TAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTTGGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
14750739 TTAGACTGGG
Statistics
Matches: 291, Mismatches: 66, Indels: 17
0.78 0.18 0.05
Matches are distributed among these distances:
158 69 0.24
159 219 0.75
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
CAACCCTTGGTTCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGATCGAAAAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCC
CCTCCTGCGTGCTGTCGATCCTGCTGCCA
Found at i:14751743 original size:25 final size:26
Alignment explanation
Indices: 14751699--14751750 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
14751689 CTGGTCCGAT
*
14751699 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14751725 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14751750 C
1 C
14751751 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14751936 original size:26 final size:26
Alignment explanation
Indices: 14751907--14751959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14751897 CCGGTTCGAT
**
14751907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
14751933 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
14751959 C
1 C
14751960 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:14752232 original size:158 final size:159
Alignment explanation
Indices: 14751933--14752434 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 159
14751923 ACTCCGTATG
14751933 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAGT
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAGT
* * * * * *
14751998 CGATCGGAGTGGCAGAATGCGAAAGTTAGTGATCGGCCCAGTCCCCTTCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGAAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGATCC
14752063 TGCTACCACAACCCTCAGTCTGGTCCGAT
131 TGCTACCACAACCCTCAGTCTGGTCCGAT
** * * * * * *
14752092 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGT-TGGGCGCTGAG-
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAGT
* * * * * *
14752155 CAGGCCGAAGAGGCATAATGCGCAAGTCAGGGATCGTCCCGGTCCCCCTCTGCGTGCTGTCGGT-
66 C-GACCGAAGAGGCAGAATGCGAAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGATC
* * * **
14752219 CTCGCTACCACAACCCT-TGATCCGG-CTGGGG
130 CT-GCTACCACAACCCTCAG-TCTGGTC-CGAT
* * * * * * *
14752250 CTTAGACATGGAATGAACTCCCTATG-CTGAATCCAACCCATGAAGCAGGCGTGTGTGCACTCAA
1 CTTAGACAAGGAATGAACTCCGTATGCCT-AAGCCAACCCATGAAACAAGCGTGTGGGCACTCAG
* ** * * * * * * *
14752314 CCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCTC-GATCCCCCT-TGGGTGCTGTCGAT
65 TCGACCGAAGAGGCAGAATGCGAAAGTCAGGGATCGGCCCAG-TCCCCCTCTGCGTGCTGTCGAT
** ** * * * *
14752377 CCTGCTGTCGTAACACTCGGTCCGATCCGAT
129 CCTGCTACCACAACCCTCAGTCTGGTCCGAT
*
14752408 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACAAGGAATGAACTCCGTATGC
14752435 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 7 0.03
158 167 0.62
159 93 0.35
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (159 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAGT
CGACCGAAGAGGCAGAATGCGAAAGTCAGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAGTCTGGTCCGAT
Found at i:14752437 original size:26 final size:26
Alignment explanation
Indices: 14752408--14752460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14752398 CCGATCCGAT
14752408 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14752434 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14752460 C
1 C
14752461 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14752741 original size:171 final size:170
Alignment explanation
Indices: 14752433--14752761 Score: 387
Period size: 171 Copynumber: 1.9 Consensus size: 170
14752423 AACTCCGTAT
* * * *
14752433 GCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACAAAATGGCGTGCGGGCGCTCAGT
1 GCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGGCGTGCGGGCGCTCAGC
* * * * * **
14752498 CGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCT
66 CGACCGGAGAGGCAGAATGCGCAAACCGAGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCT
* *
14752563 CGCTGCTGGTCCTGCTGCCATAACCCTCAGTCCGGCTGGG
131 CGCTGCTGGTCCTGCTACCACAACCCTCAGTCCGGCTGGG
* * * *
14752603 GCTTAGACAT-GGAATGAACTCCGTTTACCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATG-GCGTGCGGGCGCTCA
** * * *
14752667 GCCGACCGGAGAGGTGGAATGCGCAAACTGAGGATC-GACCCGATCCTTCC-CTATGTGCTACCG
64 GCCGACCGGAGAGGCAGAATGCGCAAACCGAGGATCAG-CCCGATCC-CCCTCTACGTGCTACCG
14752730 ATC-CTGCTGCTGGTCCTGCTACCACAACCCTC
127 ATCTC-GCTGCTGGTCCTGCTACCACAACCCTC
14752762 GATCTGGTCC
Statistics
Matches: 132, Mismatches: 22, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
170 43 0.33
171 87 0.66
172 2 0.02
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAACCGAGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCT
CGCTGCTGGTCCTGCTACCACAACCCTCAGTCCGGCTGGG
Found at i:14753118 original size:868 final size:850
Alignment explanation
Indices: 14751809--14754580 Score: 2704
Period size: 868 Copynumber: 3.2 Consensus size: 850
14751799 GGCCAGTCGA
* * * * * *
14751809 AGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATCCTGCTACTG
1 AGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTACTG
* * * * * *
14751874 GTCCTGCTATCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
66 GTCCTACTACCACAACCCTCGAT-CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * * ** *
14751939 CAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAGTCGATCG
130 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-GGCAGCCG-TCG
* * * * *
14752004 GAGTGGCAGAATGCGA-AAGTTAGTGATCGGCCCAGTCCCCT-TCTGCGTGCTGTCGATCCTGCT
193 AAGAGGCAGAATGC-ACAAGCTGGGGAT-GG-CCAGTCCCCTCT-TGCGTGCTGTCGATCCTGCT
* * * *
14752067 ACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
254 ACCGCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
14752132 TGAAACGAGTGTTGGGCGCTGAGCAGGCCGAAGAGGCATAATGCGCAAGTCAGGGATCGTCCCGG
319 TGAAACGAGTGTCGGGCACTG-TCA-GCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAG
* * * * *
14752197 TCCCCCTCTGCGTGCTGTCGGTCTCGCTACCACAACCCTTGATCCGGCTGGGGCTTAGACATGGA
382 TCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGA
* * * *
14752262 ATGAACTCCCTATGCTGAATCCAACCCATGAAGCAGGCGT-GTGTGCACTCAACCGGTCGGAGAG
447 ATGAACTCCCTAAGCT-AAGCCAACCCATGAAACAGGCGTAGGGTG--CTCAACCGGTCGGAGAG
* *
14752326 GTAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCTTGGGTGCTGTCGATCCTGCTGTCGTAAC
509 GCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCC-TGCGTGCTGTCGATCCTGCTGTCGTAAC
* * * *
14752391 ACTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCCG
573 -CTCTGTCCGGT-CGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGGATGAGCTCCG
** *
14752456 TATGCCTAAGTCAACCCACAAAATG-GCGTGCGGGCGCTCAGTCGACCGGAGAGGCATAATGCGC
635 TATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG-CGACCGGAGAGGCATAATGTGC
* *
14752520 AAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCTCGCTGCTGGTCCTGCTGCCATA
699 AAGCCGGGGATCAGCCTGATCCCCCTCTACGTGCTATCGATCTCGCTGCT-GTCCTGC-GCCA-A
*
14752585 ACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTTTACCTAAGCCAACCCACGAAAT
761 ACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT-CCTAAGCCAACCCACGAAAT
*
14752650 GAGCGTGTGGGTGCTCAGCCGACCGG
825 GAGCGTGTGGGCGCTCAGCCGACCGG
** * * * *
14752676 AGAGGTGGAATGCGCAAACTGAGGATCGACCCGATCCTTCCCTATGTGCTACCGATCCTGCTGCT
1 AGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCC-CCCCTACGTGCTACCGATCCTGCTACT
* *
14752741 GGTCCTGCTACCACAACCCTCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAG
65 GGTCCTACTACCACAACCCTCGATC-GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * ** * *
14752806 ACATGGAATGAACTCTGTATGCCTAAGCCAACCTACAAAACGAGTTTGCGGGCGGACAACCAGCC
129 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGG-CAGCC-GTC
* * *
14752871 GAAGAGGCAGAATGCACAAGCTGGGGGTGGACCAGTTCCCCTCTTGCGTGCTGTCGATCTTGCTG
192 GAAGAGGCAGAATGCACAAGCTGGGGATGG-CCAG-TCCCCTCTTGCGTGCTGTCGATCCTGCTA
* *
14752936 CCGCAACCCTCGGTTCAGG-CCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
255 CCGCAACCCTCGG-TCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
14753000 TGAAATGAGTGTGCGGGCACTGTCCCACCCGGAGAGGCATAATACGCAAACC-GAGGATTGGCCC
319 TGAAACGAGTGT-CGGGCACTGT--CAGCCGAAGAGGCATAATGCGCAAGCCAG-GGATCGGCCC
* * * * *
14753064 AG-CCCTCTTTACGTGCTGTCGGTCCCGTTGCCACAACCCTCGGTCCGACTGGGGCTTTGACATG
380 AGTCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATG
* * * * *
14753128 TAATGAACTCCCTACACCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAACCGATCGAAGA
445 GAATGAACTCCCTA-AGCTAAGCCAACCCATGAAACAGGCGTA-GGGTGCTCAACCGGTCGGAGA
** * ** * * *
14753193 GGCAGAATGCGTAAGCCGGGGATTAGCTCGGTCCCCCCTGCGTGCTACCGATCCTACTATCGCAA
508 GGCAGAATGCGTAAGCCGGGGATCGGCTCGAT-CCCCCTGCGTGCTGTCGATCCTGCTGTCGTAA
* * *
14753258 CCCTCTGTTCGGTTTGATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGGGTTGAGCTCC
572 -CCTCTGTCCGG-TCGATCTTAGACTGGGAATGAACTCG-TATGCTTAGACTGGGGATGAGCTCC
* * * * * ** * * * *
14753323 GTATGCCTAGGCCAACCCATGAAACGAGCATGCAGTTGCTCAGCCAGTCGAAAAGGC-TGAATGT
634 GTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCGA-CCGGAGAGGCAT-AATGT
* * * ** *
14753387 GCAAGCCGAGGA-CCGACCCGATCCCCC-CTGTGTGCTATCGA--TC-CTACTG---T-CG-C-A
697 GCAAGCCGGGGATCAG-CCTGATCCCCCTCTACGTGCTATCGATCTCGCTGCTGTCCTGCGCCAA
* ** * * * *
14753441 ACCCTCAGTCCGG-TCCGATCTTAGAC-TGGGAATGAACTCCATATGCTGAAGTCAATCCACGAA
761 ACCCTCAGTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATCCT-AAGCCAACCCACGAA
* * * * * *
14753504 ATGAGCATTTGGACGCTGAGCAGATCGG
823 ATGAGCGTGTGGGCGCTCAGCCGACCGG
* * * * * * * *
14753532 AGAGGCATAATGCGTAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTATTG
1 AGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTACTG
* * * * * * * *
14753597 GTCCTACTACCATAACCCTTAGTTCGGTCTGATCTTAGGCTGGGAAAGAACTCCACATGCTTGGA
66 GTCCTACTACCACAACCC-TCGATCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* *
14753662 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCGCAGCCGGTTG
130 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-GCAGCC-GTCG
* * * * * * * * ** *
14753727 AAGAGGTAGAATGCGCAAGCCGAGGACCGGCCCGATCTCCC-C-TACATATTGTCGATCCTACTA
193 AAGAGGCAGAATGCACAAGCTGGGGA-TGGCCAG-TC-CCCTCTTGCGTGCTGTCGATCCTGCTA
* * * * * * * *
14753790 CCGTAACCCTTGGTCCGGTCTGATCTTAAACTGGGAATTAACTCCGTATGCCTAAGT-AAACCAC
255 CCGCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
* * * ** *
14753854 GAAACGAGCGTTCGGGCACTAAGTCGGTCGAAGACACATAATGCGCAAGCCAGGGATCAGCCCAG
320 GAAACGAGTG-TCGGGCACT--GTCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAG
* * * *
14753919 TCCCCCTTTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACATGGA
382 TCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGA
* * * ** *
14753984 ATGAACTCCTTACGCCTAAGCCAACCCATGAAACAGGCATACGGGTGCTCAGTC-GACTGGAGAG
447 ATGAACTCCCTAAG-CTAAGCCAACCCATGAAACAGGCGTA-GGGTGCTCAACCGGTC-GGAGAG
* * * *
14754048 GCAGAATGCAG-AAGCAGGGGATCGGCCCGATCCCCCTGCGTGCTGTTGATCTTGCTGTCGTAAC
509 GCAGAATGC-GTAAGCCGGGGATCGGCTCGATCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAAC
* * * *
14754112 CTTCTGTCTAGGTCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCA
573 C-TCTGTC-CGGTCGATCTTAGACTGGGAATGAAC-TCGTATGCTTAGACTGGGGATGAGCTCCG
* *
14754177 TATGCCTAAGTCAACACATGAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCATAATGTGC
635 TATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTC-AGCGACCGGAGAGGCATAATGTGC
* * * *
14754242 AAGCCGGGGTTTAG-CTCGATCCCCCTCTACGTGCTATCGATCCCGCTGCCAGTCCTGCGGCCAC
699 AAGCCGGGGATCAGCCT-GATCCCCCTCTACGTGCTATCGATCTCGCTG-CTGTCCTGC-GCCA-
* * *
14754306 AACCTTC-GATCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAA
760 AACCCTCAG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT-CCTAAGCCAACCCACGAA
* *
14754370 ATGAGCGTGCGGGCGCTCAGCCGATCGGG
823 ATGAGCGTGTGGGCGCTCAGCCGA-CCGG
* * * * * * ** * *
14754399 AGAGGCAAAATGCGTAAGA-TGGGGATTGACCTGATCCCCCCTACGTGCTGTCGATCCTGTTGCT
1 AGAGGCAGAATGCGCAA-ACCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTACT
* * * * * * *
14754463 GGTCCTACTATCATAGCACTCGATGCAGTCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAG
65 GGTCCTACTACCACAACCCTCGAT-CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
*
14754528 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
129 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
14754581 ACTCAGCGTG
Statistics
Matches: 1530, Mismatches: 309, Indels: 132
0.78 0.16 0.07
Matches are distributed among these distances:
852 3 0.00
853 192 0.13
854 210 0.14
855 159 0.10
856 110 0.07
857 2 0.00
858 3 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 1 0.00
863 1 0.00
864 2 0.00
865 5 0.00
866 68 0.04
867 196 0.13
868 474 0.31
869 94 0.06
870 6 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (850 bp):
AGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTACTG
GTCCTACTACCACAACCCTCGATCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGGCAGCCGTCGAAG
AGGCAGAATGCACAAGCTGGGGATGGCCAGTCCCCTCTTGCGTGCTGTCGATCCTGCTACCGCAA
CCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGTGTCGGGCACTGTCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTTT
GCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCC
CTAAGCTAAGCCAACCCATGAAACAGGCGTAGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGTA
AGCCGGGGATCGGCTCGATCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCTCTGTCCGGTCG
ATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGGATGAGCTCCGTATGCCTAAGTCAACC
CATGAAATGAGCGTGCGGGCGCTCAGCGACCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCT
GATCCCCCTCTACGTGCTATCGATCTCGCTGCTGTCCTGCGCCAAACCCTCAGTCCGGCTGGGGC
TTAGACATGGAATGAACTCCGTATCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCG
ACCGG
Found at i:14753933 original size:354 final size:354
Alignment explanation
Indices: 14753256--14753934 Score: 787
Period size: 354 Copynumber: 1.9 Consensus size: 354
14753246 CTACTATCGC
* * * * ** *
14753256 AACCCTCTGTTCGGTTTGATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGGGTTGAGCT
1 AACCCTCTGTTCGGTCTGATCTTAGACTGGGAAAGAACTCCACATGCTTAGACTGGGAATGAACT
* ** *
14753321 CCGTATGCCTAGGCCAACCCATGAAACGAGCATGCAGTTGCTCAGCCAGTCGAAAAGGCTGAATG
66 CCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCGCAGCCAGTCGAAAAGGCTGAATG
* *** * **
14753386 TGCAAGCCGAGGACCGACCCGATCCCCCCTGTGTGCTATCGATCCTACTGTCGCAACCCTCAGTC
131 CGCAAGCCGAGGACCGACCCGATCCCCCCTACATACTATCGATCCTACTACCGCAACCCTCAGTC
* * * *
14753451 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTGAAGTCAATCCACGAAATGAGCATTTGG
196 CGGTCCGATCTTAAACTGGGAATGAACTCCATATGCTGAAGTCAAACCACGAAACGAGCATTCGG
* * * ** * *
14753516 ACGCTGAGCAGATCGGAGAGGCATAATGCGTAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCT
261 ACACTAAGCAGATCGAAGACACATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCCTGCGTGCT
14753581 ATCGATCCTGCTATTGGTCCTACTACCAT
326 ATCGATCCTGCTATTGGTCCTACTACCAT
* *
14753610 AACCCT-TAGTTCGGTCTGATCTTAGGCTGGGAAAGAACTCCACATGCTTGGACAT-GGAATGAA
1 AACCCTCT-GTTCGGTCTGATCTTAGACTGGGAAAGAACTCCACATGCTTAGAC-TGGGAATGAA
* * * * *
14753673 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCGCAGCCGGTTGAAGAGG-TAGA
64 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCGCAGCCAGTCGAAAAGGCT-GA
* * * * * **
14753737 ATGCGCAAGCCGAGGACCGGCCCGATCTCCCCTACATATTGTCGATCCTACTACCGTAACCCTTG
128 ATGCGCAAGCCGAGGACCGACCCGATCCCCCCTACATACTATCGATCCTACTACCGCAACCCTCA
* * * *
14753802 GTCCGGTCTGATCTTAAACTGGGAATTAACTCCGTATGCCT-AAGT-AAACCACGAAACGAGCGT
193 GTCCGGTCCGATCTTAAACTGGGAATGAACTCCATATG-CTGAAGTCAAACCACGAAACGAGCAT
* * * *
14753865 TCGGGCACTAAGTC-GGTCGAAGACACATAATGCGCAAGCCAGGGATCAGCCC-AGTCCCCCTTT
257 TCGGACACTAAG-CAGATCGAAGACACATAATGCGCAAGCCAAGGATCAGCCCGA-TCCCCC-CT
14753928 GCGTGCT
319 GCGTGCT
14753935 GCCAGTCCCG
Statistics
Matches: 267, Mismatches: 51, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
352 1 0.00
353 62 0.23
354 201 0.75
355 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (354 bp):
AACCCTCTGTTCGGTCTGATCTTAGACTGGGAAAGAACTCCACATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCGCAGCCAGTCGAAAAGGCTGAATG
CGCAAGCCGAGGACCGACCCGATCCCCCCTACATACTATCGATCCTACTACCGCAACCCTCAGTC
CGGTCCGATCTTAAACTGGGAATGAACTCCATATGCTGAAGTCAAACCACGAAACGAGCATTCGG
ACACTAAGCAGATCGAAGACACATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCCTGCGTGCT
ATCGATCCTGCTATTGGTCCTACTACCAT
Found at i:14754180 original size:26 final size:26
Alignment explanation
Indices: 14754129--14754181 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14754119 CTAGGTCGAT
***
14754129 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14754155 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14754181 C
1 C
14754182 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14754526 original size:26 final size:26
Alignment explanation
Indices: 14754497--14754549 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14754487 GCAGTCCGAT
*
14754497 CTTAGAC-TGGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14754523 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14754549 C
1 C
14754550 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14754829 original size:26 final size:26
Alignment explanation
Indices: 14754788--14754840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14754778 CCGATTCGAT
14754788 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14754814 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14754840 C
1 C
14754841 CTCAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14755010 original size:26 final size:26
Alignment explanation
Indices: 14754972--14755024 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14754962 CCGGTTCAAT
14754972 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* *
14754998 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACCCCGTATG
14755024 C
1 C
14755025 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:14755181 original size:184 final size:184
Alignment explanation
Indices: 14754629--14755182 Score: 566
Period size: 184 Copynumber: 3.0 Consensus size: 184
14754619 TCCGGCTGAG
* * * * * *
14754629 GCTTAGACATGAAATGAACTCCCA-ATGCGTAAGGCAAGCCATGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
14754693 GCCGGT-CGGAGAGGCAGAATG-AGCAAGTTGGGGATCGGCCCGATCCCTCCTTCGTGTTGTCGA
65 GCC-GTCCGGAGAGGCAGAATGCA-CAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGA
* * *
14754756 TCCTGCT-GTCGCAACCCTCGGTCCGATTC-GATCTTAGACTAGGAATGAACTCCATAT
128 TCCTGCTACT-GCAACCCTCGGTCC-AGTCTGATCTTAGACTAGGAATGAACTCCGTAT
* * * * * * *
14754813 GCTTAGAC-TGGGGATGAACTCCATATGCCTCAGTCAATCCACGAAACGAGTGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * * * *
14754877 GTTGGCCGGAGAGGCAAAATGCGCAAGCCGGGCATCGACCCGATCCCCCCTACGTGCTGCCGATC
65 GCCGTCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATC
* * * *
14754942 CTGCTACTGCAACCCTCGATCCGGT-TCAATCTTAGACTAGGAATGAACCCCGTAT
130 CTGCTACTGCAACCCTCGGTCCAGTCT-GATCTTAGACTAGGAATGAACTCCGTAT
** * *
14754997 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14755062 CCATCCGGAGAGGCAGAACGCACAAGTCGGGGACCGACCTGATCCCCCCTACGTGCTGTTGATCC
66 CCGTCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * * *
14755127 TGCTACTGTAACACTCGGTCCAGTCTGATCTTAGA-TTGGTAATAAACTCCGTAT
131 TGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGG-AATGAACTCCGTAT
14755181 GC
1 GC
14755183 CTAAGTCAAC
Statistics
Matches: 297, Mismatches: 63, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
183 9 0.03
184 285 0.96
185 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGTCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
TGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:14755502 original size:26 final size:26
Alignment explanation
Indices: 14755473--14755525 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14755463 CTGGTCCGGT
*
14755473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
14755499 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14755525 C
1 C
14755526 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14755688 original size:196 final size:197
Alignment explanation
Indices: 14755378--14755772 Score: 499
Period size: 196 Copynumber: 2.0 Consensus size: 197
14755368 CGGGTGCTCA
* * **
14755378 GCCGACCGGAGAGGCAAAATGCGCAAGTCAAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
1 GCCGACCGGAGAGGCAAAATGCGCAAGTCAAGGATCGACCCGATCCCCCCTACGTGCTACCGATC
* * ** * **
14755443 CTGTTGCAGCAACCCTCGATCTGGTCCGGTCTTAGACTGGGAATGAACTCCGTATGCTTAAAC-T
66 CGGCTGCAGCAACCCTCGATCCAGTCCGATCTTAGACCAGGAATGAACTCCGTATGCTTAAACAT
* * * * * *
14755507 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGTCGGTCGGG
131 -GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAGTCGATCGGA
14755572 GAG
195 GAG
* * ** *
14755575 GCCGATCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGGCCCGAT-CCCCCTACGTGCTACCGAT
1 GCCGACCGGAGAGGCAAAATGCGCAAGTC-AAGGATCGACCCGATCCCCCCTACGTGCTACCGAT
** * *
14755638 CCGGCTGTGGCAACCCTCGGTCCAGTCCGATCTTAGACCAGGAATGAACTCCGTATGCTTAGACA
65 CCGGCTGCAGCAACCCTCGATCCAGTCCGATCTTAGACCAGGAATGAACTCCGTATGCTTAAACA
* *
14755703 TGGGATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAACGTGCGGGCGCTCAGTCGATCGGA
130 TGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAGTCGATCGGA
14755768 GAG
195 GAG
14755771 GC
1 GC
14755773 AGAATGCGCA
Statistics
Matches: 168, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
196 131 0.78
197 37 0.22
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.18
Consensus pattern (197 bp):
GCCGACCGGAGAGGCAAAATGCGCAAGTCAAGGATCGACCCGATCCCCCCTACGTGCTACCGATC
CGGCTGCAGCAACCCTCGATCCAGTCCGATCTTAGACCAGGAATGAACTCCGTATGCTTAAACAT
GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAGTCGATCGGAG
AG
Found at i:14755698 original size:26 final size:26
Alignment explanation
Indices: 14755669--14755721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14755659 CCAGTCCGAT
14755669 CTTAGACCA-GGAATGAACTCCGTATG
1 CTTAGA-CATGGAATGAACTCCGTATG
*
14755695 CTTAGACATGGGATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14755721 C
1 C
14755722 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14755993 original size:155 final size:156
Alignment explanation
Indices: 14755694--14755983 Score: 370
Period size: 155 Copynumber: 1.9 Consensus size: 156
14755684 AACTCCGTAT
* * * *
14755694 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATG-C-AAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
* * * **
14755759 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCTCGGTCCCCCCTGCATGCTGTCGATCC
64 CCGACCGGAGAGGCAGAATGAGCAAGCCAGGGACTGGCTCGGTCCCCCCTGCATGCTACCGATCC
14755824 TGCTGCGACAACCCTCGGTCTGGCTGGG
129 TGCTGCGACAACCCTCGGTCTGGCTGGG
* **
14755852 GCTTAGACATGGAATGAACTCCCTATG-AAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACC
1 GCTTAGACATGGAATGAACTCCCTATGCAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAACC
*** * **
14755916 GACCGGAGAGGCAGAATGAGCAAGTTGGGGA-TCGGCTTGGT-CCCCCTGGGTGCTACCGATCCT
66 GACCGGAGAGGCAGAATGAGCAAGCCAGGGACT-GGCTCGGTCCCCCCTGCATGCTACCGATCCT
14755979 GCTGC
130 GCTGC
14755984 CGCAAACCCT
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
154 24 0.21
155 64 0.57
158 25 0.22
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAACC
GACCGGAGAGGCAGAATGAGCAAGCCAGGGACTGGCTCGGTCCCCCCTGCATGCTACCGATCCTG
CTGCGACAACCCTCGGTCTGGCTGGG
Found at i:14756012 original size:155 final size:156
Alignment explanation
Indices: 14755694--14756027 Score: 356
Period size: 155 Copynumber: 2.1 Consensus size: 156
14755684 AACTCCGTAT
* * * *
14755694 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATG-C-AAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
* * * **
14755759 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCTCGGTCCCCCCTGCATGCTGTCGATCC
64 CCGACCGGAGAGGCAGAATGAGCAAGCCAGGGACTGGCTCGGTCCCCCCTGCATGCTACCGATCC
* * *
14755824 TGCTGCGACAACCCTCGGTCTGGCTGGG
129 TGCTGCGACAACCCTCGATCCGGCTGGA
* **
14755852 GCTTAGACATGGAATGAACTCCCTATG-AAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAACC
1 GCTTAGACATGGAATGAACTCCCTATGCAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAACC
*** * **
14755916 GACCGGAGAGGCAGAATGAGCAAGTTGGGGA-TCGGCTTGGT-CCCCCTGGGTGCTACCGATCCT
66 GACCGGAGAGGCAGAATGAGCAAGCCAGGGACT-GGCTCGGTCCCCCCTGCATGCTACCGATCCT
14755979 GCTGCCG-CAAACCCTCGATCCGGTCT-GA
130 GCTG-CGAC-AACCCTCGATCCGG-CTGGA
* *
14756007 TCTTAGGC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
14756028 TGTATGCTTA
Statistics
Matches: 148, Mismatches: 23, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
154 25 0.17
155 96 0.65
156 2 0.01
158 25 0.17
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAACC
GACCGGAGAGGCAGAATGAGCAAGCCAGGGACTGGCTCGGTCCCCCCTGCATGCTACCGATCCTG
CTGCGACAACCCTCGATCCGGCTGGA
Found at i:14756628 original size:317 final size:324
Alignment explanation
Indices: 14756034--14756706 Score: 792
Period size: 317 Copynumber: 2.1 Consensus size: 324
14756024 ACTCTGTATG
* *
14756034 CTTAGACTAGGG-ATGAACTCCGTATGCGTAATTCAACCCACAAAACGAGCGTACGGGCGCTCAA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAA
* * *
14756098 CCGGCCAGAGAGGCATAATGAACAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
65 CCGGCCAGAGAGGCATAATGAACAAGCCGGGGACCAGCCCGATCCCCCTCTACATGCTGCCGATC
* * *
14756163 CCATAGTCGGTCCTACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTTTGT
130 CC--AGTCGGTCCTA---CCACAACCCTCGGTCCGGCTAGGGCTTAGACACGGAATGAACTCTGA
* * * **
14756228 ATGCCTAATCTAACCCATGAAACGAGCGTGCGGGTGCTCAACAGACCGGAGAGGCAGAATGCGCA
190 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACAGACCGGAGAGGCAGAATGCGCA
* * * **
14756293 AGCCGAGGATCGGCCCGATCCC-CTTACGTGTTGTCGATCCTGCTACCGTAACCCTTAG-TCTGA
255 AGCCGAAGATCGGCCCGATCCCTCTTACGTGCTGTCGATCCTGCTACCGCAACCCCCAGTTC-G-
14756356 TTT-GAT
318 TTTCGAT
* * * * * * *
14756362 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAAC
* * ** * * *
14756427 CGGTCGGAGAGGCATAATGTGCAAGTCGGGGACCAGCTCGATCCCCCTCTACATGCTGCCGGTCC
66 CGGCCAGAGAGGCATAATGAACAAGCCGGGGACCAGCCCGATCCCCCTCTACATGCTGCCGATCC
* * *
14756492 C-G-CTG-CC-A-CA-AACCGTCGGTCCGGCTAGGGCTTAGACACGGAATGAACTCTGAATGCGT
131 CAGTCGGTCCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACACGGAATGAACTCTGAATGCCT
* * * * * *
14756551 AAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCAG-TCGGAGAGGTAGAATGCGTAAGCTG
196 AAGCCAACCCACGAAACGAGCGTGCGGGCACTCA-ACAGACCGGAGAGGCAGAATGCGCAAGCCG
* * *
14756615 AAGATCTGCCCGATCCCTCTTGCGTGCTGTCGATCCTGCTACCGCAACCCCCGGTTCGTTTCGAT
260 AAGATCGGCCCGATCCCTCTTACGTGCTGTCGATCCTGCTACCGCAACCCCCAGTTCGTTTCGAT
14756680 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14756707 TTAGACTGGG
Statistics
Matches: 296, Mismatches: 44, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
317 111 0.38
318 66 0.22
319 2 0.01
322 1 0.00
323 2 0.01
324 2 0.01
325 1 0.00
327 3 0.01
328 108 0.36
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (324 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAAC
CGGCCAGAGAGGCATAATGAACAAGCCGGGGACCAGCCCGATCCCCCTCTACATGCTGCCGATCC
CAGTCGGTCCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACACGGAATGAACTCTGAATGCCT
AAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACAGACCGGAGAGGCAGAATGCGCAAGCCGA
AGATCGGCCCGATCCCTCTTACGTGCTGTCGATCCTGCTACCGCAACCCCCAGTTCGTTTCGAT
Found at i:14756716 original size:26 final size:26
Alignment explanation
Indices: 14756680--14756732 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14756670 TCGTTTCGAT
*
14756680 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
14756706 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14756732 C
1 C
14756733 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14757049 original size:684 final size:668
Alignment explanation
Indices: 14755695--14757389 Score: 1758
Period size: 684 Copynumber: 2.5 Consensus size: 668
14755685 ACTCCGTATG
* * * * * *
14755695 CTTAGACATGGG-ATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAACGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTACGGGTGCTGAG
* * * * * * * *
14755759 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCTCGGTCCCCC-CTGCATGCTGTCGATC
65 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGACTAGCTCGATCCCCCTCTGCATGCTGCCGGTC
* * * *
14755823 CTGCTGCGACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT--G-AAGCCA
130 CCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACACGGAATGAACTCCCTATGCGTAAGCCA
* * * * **
14755885 ACCCATGAAACGGGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGAGCAAGTTGGGGATCG
195 ACCCACGAAACGGGCGTGCGGGCGCTCAGCCG-TCGGAGAGGCAGAATGAGCAAGCTGAAGATCG
** * * * * *
14755950 GCTTGGTCCCCCTGGGTGCTACCGATCCTGCTGCCGCAAACCCTCGATCCGGTCTGATCTTAGGC
259 GCCCGATCCCCCTGCGTGCTACCGATCCTGCTACCGCAAACCCCCGATCCGGTCTGATCTTAGAC
* * * *
14756015 TGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCGTAATTCAACCCACAAAAC
324 TGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAAC
* *
14756080 GAGCGTACGGGCGCTCAACCGGCCAGAGAGGCATAATGAACAAGCCGGGGATCAGCCCGATCCCC
389 GAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAAAATGAACAAGCCAGGGATCAGCCCGATCCCC
* *
14756145 CTCTACGTGCTGTCGATCCCATAGTCGGTCCTACTGCCACAACCCTCGGTCCGGCTAGGGCTTAG
454 CTCTACGTGCTGTCGATCCCATAGTCGGTCCTACTGCCACAACACTCGGTCCGACTAGGGCTTAG
* * * * * *
14756210 ACATGGAATGAACTTTGTATGCCTAATCTAACCCATGAAACGAGCGTGCGGGTGCTCAACAGACC
519 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACAGACC
* * * * * *
14756275 GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCTTACGTGTTGTCGATCCTGCTACC
584 AGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCTTAC-TGCTATCGATCCTACTACC
* * *
14756340 GTAACCCTTAGTCTGATTTGAT
648 G-AACCCTCAGTCCGATTCGAT
* *
14756362 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTACGGGTGCTGAGC
* * * *
14756427 CGGTCGGAGAGGCATAATGTGCAAGTCGGGGACCAGCTCGATCCCCCTCTACATGCTGCCGGTCC
66 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGACTAGCTCGATCCCCCTCTGCATGCTGCCGGTCC
* * ***
14756492 CGCTGCCACAAACCGTCGGTCCGGCTAGGGCTTAGACACGGAATGAACTCTGAATGCGTAAGCCA
131 CGCTGCCAC-AACCCTCGGTCTGGCTAGGGCTTAGACACGGAATGAACTCCCTATGCGTAAGCCA
* * * * *
14756557 ACCCACGAAACGGGCGTGCGGGCACTCAGCCAGTCGGAGAGGTAGAATGCGTAAGCTGAAGATCT
195 ACCCACGAAACGGGCGTGCGGGCGCTCAGCC-GTCGGAGAGGCAGAATGAGCAAGCTGAAGATCG
* ** * * *
14756622 GCCCGATCCCTCTTGCGTGCTGTCGATCCTGCTACCGC-AACCCCCGGTTC-GTTTCGATCTTAG
259 GCCCGATCCC-CCTGCGTGCTACCGATCCTGCTACCGCAAACCCCCGATCCGGTCT-GATCTTAG
* * *
14756685 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTGTATGCCTAAGTCAACCCACGAA
322 ACTGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACAAA
** * *** *
14756750 ACGAGCGTGTGGGTGCTCAGCCGACCGGAGTGGCTGGTCAGAGAGGCAAAATGCGTAAGTCAGGG
387 ACGAGCGTACGGGCGCTCA----ACC-----GGC----CAGAGAGGCAAAATGAACAAGCCAGGG
* * *
14756815 ATCAGCTCGATCCCCC-CTACGTGCTGTCGATCCCGCT-G-CTGGTCCTGCTGCCACAACACTCG
439 ATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCC-ATAGTC-GGTCCTACTGCCACAACACTCG
* * *
14756877 GTCTGACTTA-TGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGT
502 GTCCGAC-TAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
* * * * * *
14756941 GCAGGCGCTCAGTC-GGCCAGAGAGGTAGAATGCACAAGCCGGGGA-CTGACCTGGTCCCCCCTG
566 GCAGGCGCTCA-ACAGACCAGAGAGGCAGAATGCACAAGCCGAGGATC-GACCCGAT--CCCCT-
* *
14757004 TA-TGCTATCGATCCTACTGGCC-AACCCTCAGTCCGGTTCGAT
626 TACTGCTATCGATCCTACT-ACCGAACCCTCAGTCCGATTCGAT
* * * * *
14757046 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGATATGAGCGGACGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTACGGGTGCTGAGC
* * *
14757111 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGA-TACGTTCGATCCCCCTCTGCGTGCTACCGGTC
66 CGGTCGGAGAGGCATAATGCGCAAGCCGGGGACTA-GCTCGATCCCCCTCTGCATGCTGCCGGTC
* *
14757175 CCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATC-GAGTGAACTCCCTATGCCTAAGCC
130 CCGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACA-CGGAATGAACTCCCTATGCGTAAGCC
* * * * * * *
14757239 AACCCACGAAACGGGCGTTCGGCCGCGCAGTCGGTCGGAGAGGCAGAATGTGCAAGC-CAGGGAT
194 AACCCACGAAACGGGCGTGCGGGCGCTCAG-CCGTCGGAGAGGCAGAATGAGCAAGCTGA-AGAT
* * * * * * * * * * *
14757303 CGACCCCATCCCCCCTACATTCTGCCGATCCTACTGCCG-TAACCCTC-AGTCCGGTCCGATCTT
257 CGGCCCGAT-CCCCCTGCGTGCTACCGATCCTGCTACCGCAAACCCCCGA-TCCGGTCTGATCTT
14757366 AGACAT-GGAATGAACTCCGTATGC
320 AGAC-TGGGAATGAACTCCGTATGC
14757390 CTAAGTCAAC
Statistics
Matches: 844, Mismatches: 144, Indels: 64
0.80 0.14 0.06
Matches are distributed among these distances:
666 4 0.00
667 91 0.11
668 21 0.02
669 38 0.05
671 4 0.00
672 155 0.18
673 23 0.03
676 3 0.00
681 3 0.00
682 1 0.00
683 159 0.19
684 280 0.33
685 53 0.06
686 7 0.01
687 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (668 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTACGGGTGCTGAGC
CGGTCGGAGAGGCATAATGCGCAAGCCGGGGACTAGCTCGATCCCCCTCTGCATGCTGCCGGTCC
CGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACACGGAATGAACTCCCTATGCGTAAGCCAA
CCCACGAAACGGGCGTGCGGGCGCTCAGCCGTCGGAGAGGCAGAATGAGCAAGCTGAAGATCGGC
CCGATCCCCCTGCGTGCTACCGATCCTGCTACCGCAAACCCCCGATCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACGA
GCGTACGGGCGCTCAACCGGCCAGAGAGGCAAAATGAACAAGCCAGGGATCAGCCCGATCCCCCT
CTACGTGCTGTCGATCCCATAGTCGGTCCTACTGCCACAACACTCGGTCCGACTAGGGCTTAGAC
ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACAGACCAG
AGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCTTACTGCTATCGATCCTACTACCGAA
CCCTCAGTCCGATTCGAT
Found at i:14757434 original size:158 final size:155
Alignment explanation
Indices: 14756889--14757464 Score: 514
Period size: 158 Copynumber: 3.7 Consensus size: 155
14756879 CTGACTTATG
* *
14756889 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCGCTCAGC
* * * * * * * * *
14756954 CGGCCAGAGAGGTAGAATGCACAAGCCGGGGA-CTGACCTGGTCCCCCCTGTATGCTATCGATCC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCCGATCCCCCCTGCATGCTACCGATCC
*
14757018 TACTGGCCAACCCTCAGTCCGGTTCGAT
129 TACT-GCCAACCCTCAGTCCGGTCCGAT
* * * * * *
14757046 CTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCACGATATGAGCG-GACGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG-C-GGCGCTCA
* * ** * *
14757109 GCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATACG-TTCGATCCCCCTCTGCGTGCTACCGG
63 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGAT-CGACCCGATCCCCC-CTGCATGCTACCGA
** * * * **
14757173 TCCCGCTGCCACAACCCTCGGTCTGG-CTAGGG
126 TCCTACTG-C-CAACCCTCAGTCCGGTC-CGAT
* * * * * * * *
14757205 CTTAGACATCGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTTCGGCCGCGCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGG-CGCTCAGC
* * * * *
14757270 CGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCCATCCCCCCTACATTCTGCCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCT
14757335 ACTGCCGTAACCCTCAGTCCGGTCCGAT
130 ACTGCC--AACCCTCAGTCCGGTCCGAT
* * * * *
14757363 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCTGGTGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCGCTCAGC
* * *
14757428 CAGTCGGAGAGGCAGAATGCGCAAGTCAAGGATCGAC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
14757465 TCGGTCTGCC
Statistics
Matches: 325, Mismatches: 78, Indels: 31
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 88 0.27
158 131 0.40
159 102 0.31
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTA
CTGCCAACCCTCAGTCCGGTCCGAT
Found at i:14757563 original size:26 final size:26
Alignment explanation
Indices: 14757534--14757586 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14757524 CCGGTCCGAT
*
14757534 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14757560 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14757586 C
1 C
14757587 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14757760 original size:26 final size:26
Alignment explanation
Indices: 14757720--14757771 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14757710 TGGTTCAATA
14757720 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
14757746 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
14757772 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:14758075 original size:26 final size:26
Alignment explanation
Indices: 14758037--14758089 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14758027 CCGGTCCGAT
*
14758037 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14758063 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14758089 C
1 C
14758090 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14758554 original size:26 final size:26
Alignment explanation
Indices: 14758525--14758577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14758515 CCGATCCGAT
14758525 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
** *
14758551 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
14758577 C
1 C
14758578 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:14760256 original size:26 final size:25
Alignment explanation
Indices: 14760227--14760277 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
14760217 GCTCAAACTT
14760227 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCC-TATGC
14760253 TTAGACATGGAATGAACTCCTATGC
1 TTAGACATGGAATGAACTCCTATGC
14760278 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCCTATGC
Found at i:14760619 original size:26 final size:26
Alignment explanation
Indices: 14760581--14760633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14760571 CCAGTCTGAT
14760581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14760607 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14760633 C
1 C
14760634 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14761016 original size:159 final size:156
Alignment explanation
Indices: 14760607--14761032 Score: 378
Period size: 159 Copynumber: 2.7 Consensus size: 156
14760597 ACTCCGTATG
* *
14760607 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA--TACGGGCACTTAGCT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTACGGGCACTCAGCT
* * * * * * * *
14760670 GGCCT-TAGAGGTAGAATGCGTAAA-TCGGGGACCAGCCTGGTCCCCCTTGCATGCTGTCCATCT
65 GG-CTGAAGAGGCAGAATGC-AAAAGTCAGGGATCAGCCCGGTCCCCCTTGCATGCTATCCATCC
** * * *
14760733 TGCTGCCACAACTTTTGGTCTGGTCCGAT
128 CACTGCCACAACCTTCGATCTGGTCCGAT
* * * * * * **
14760762 CTTAGGCTAGGAATGAACTCCGTATGCCAAAGTCAACCCGCGAAACGAGCGTTCGGGCGCGGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-CGTACGGGCACTCAGC
** * * ** * * *
14760827 CAGCCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGGTCCCTCTCTGCATGCTAT-CAGTC
64 TGGCTGAAGAGGCAGAATGCAAAAGTCAGGGATCAGCCCGGTCCCCCT-TGCATGCTATCCA-TC
* *
14760891 CCACTGCCACAACCTTCGATCTGG-CTGGGT
127 CCACTGCCACAACCTTCGATCTGGTC-CGAT
* * *
14760921 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GACGTACGGGCACTCAGC
*
14760986 TGGCTGAAGAGGCAGAATGCAAAAGTCAGGGATCAGCCCGATCCCCC
64 TGGCTGAAGAGGCAGAATGCAAAAGTCAGGGATCAGCCCGGTCCCCC
14761033 CTACGTGCTG
Statistics
Matches: 208, Mismatches: 52, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
154 1 0.00
155 41 0.20
157 3 0.01
158 42 0.20
159 118 0.57
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTACGGGCACTCAGCTG
GCTGAAGAGGCAGAATGCAAAAGTCAGGGATCAGCCCGGTCCCCCTTGCATGCTATCCATCCCAC
TGCCACAACCTTCGATCTGGTCCGAT
Found at i:14761427 original size:527 final size:521
Alignment explanation
Indices: 14760771--14762429 Score: 1567
Period size: 527 Copynumber: 3.2 Consensus size: 521
14760761 TCTTAGGCTA
* * ** *
14760771 GGAATGAACTCCGTATGCCAAAGTCAACCCGCGAAACGAGCGTTCGGGCGCGGAGCCAGCCGAAG
1 GGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAG
* * * * * * *
14760836 AGGCATAATGCGTAAGCCAGGGATCGGCCCGGTCCCTCTCTGCATGCTATCAGTCCCACTGCCAC
66 AGGCAGAATACGCAAGCCAGGGATCGACCCGATCCCT-TCTGCATGCTACCGGTCCCACTGCCAC
* * *
14760901 AACCTTCGATCTGGCTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
130 AACCCTCGATCCGACTGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* *
14760966 CGGACGTGCAGGCACTCAGCTGGCTGAAGAGGCAGAATGCAAAAGTCAGGGATCAGCCCGATCCC
194 CGGACGTGCAGGCGCTCAGCTGGCTGAAGAGGTAGAATGCAAAAGTCAGGGATCAGCCCGATCCC
* ** * * *
14761031 CCCTACGTGCTGTCGATCCTGTTACCGTAATGCTTGGTTCGATCTGATCCTAGACTGGGAATGAA
259 CCCTACGTGCTGTCGATCCTGCTACCGTAACACTCGGTCCGGTCTGATCCTAGACTGGGAATGAA
* *
14761096 CTCCGTATGCTTAGACTAGAGATGAACTTTTTATGCCTAAGTCAACCCACAAAATGAGCGTGCGA
324 CTCCGTATGCTTAGACTAGAGATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGA
* * * *
14761161 GCGCTCAACCGGCCAGAGAGGCCGGTCAGAGAGGTATAATGTGCAAGTCGGGGATCAGCCCGATC
389 GCGCTCAACCGGCCAGAGAGGCCGGTTAGAGAGGTATAATGTGCAAGCCGGGGATCAGCCTGGTC
* * **
14761226 CCCCTCTACGTGCTGCCAATCCCACTGCCAGTCTTGCTGCCACAACCCTCAGTCCGGCTAGGGCT
454 CCCCTCTGCGTGCTGCCGATCCCGTTGCC-GTCTTGCT-CCACAACCCTCAGTCC-GCT-GGGCT
14761291 TAGACAT
515 TAGACAT
* *
14761298 GGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAG
1 GGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAG
* ** * **
14761363 AGGTAGAATACGCAAGCTGGGGATCGACCCGATCCTCTTTTG-AGTGCTACCGGTCCTGCTGCCA
66 AGGCAGAATACGCAAGCCAGGGATCGACCCGATCC-CTTCTGCA-TGCTACCGGTCCCACTGCCA
* ** *
14761427 CAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATTCATGAA
129 CAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * *** * *
14761492 ACAGG-CGTG-TGAGCGCTCAAC-CGATCGAAGAGGTAGAATGTGTAAGCCAGGGATCGGCCCGA
193 AC-GGACGTGCAG-GCGCTCAGCTGGCT-GAAGAGGTAGAATGCAAAAGTCAGGGATCAGCCCGA
* * * * * *
14761554 TCCCCAATTGTGTGCTATCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGAT
255 TCCCC--------CCTA-CG-TGCTG-T-C-GATCCTGCTACCGTAACACTCGGTCCGGTCTGAT
* * * * * **
14761619 CTTAGACTGGGTATGAACTTCGTATGCTTAGACATGGA-AAGAACTCCGTATGCCTAAG-CTAAC
307 CCTAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGAGATGAACTTTGTATGCCTAAGTC-AAC
* * * * * *
14761682 CCATGAAATGAGCGTGCG-GGGACTC-A---GTC-----GGCC--TTAGAGA--TAGAATGCGTA
370 CCACGAAATGAGCGTGCGAGCG-CTCAACCGGCCAGAGAGGCCGGTTAGAGAGGTATAATGTGCA
* * * * * * *
14761733 AGCCAGGGA-CTAGCCTGGTCCCCCT-TGCATGCTGTCGATCCTGTTGCCG--TAGC-CCTCGA-
434 AGCCGGGGATC-AGCCTGGTCCCCCTCTGCGTGCTGCCGATCCCGTTGCCGTCTTGCTCCACAAC
* ** *
14761792 TC-CAGT---CTGATCTTATAC-T
498 CCTCAGTCCGCTGGGCTTAGACAT
** * * * * *
14761811 GGGAATGAACTCTATATGCCAAAGTCAACCCACGAAACGAGCGTTCGAGTG-TGGAGCCGGCTGA
1 -GGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CAGCCGGCCGA
* * * * *
14761875 AGAGGCATAATGC-CTAAGCCAGGGATCGACCCAATCCCCCTCTGCATGCTGCCGGTCCCACTGC
64 AGAGGCAGAATACGC-AAGCCAGGGATCGACCCGAT-CCCTTCTGCATGCTACCGGTCCCACTGC
14761939 CACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
127 CACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * * * *
14762004 AAACGGACGTGCGGGTGCTCAGCTGGCCGGAGACGTAGAATGCACAAGTC-GAGGATCAGCCCGG
191 AAACGGACGTGCAGGCGCTCAGCTGGCTGAAGAGGTAGAATGCAAAAGTCAG-GGATCAGCCCGA
* * * * * *
14762068 TCCCCCCTGCGTGCTGTTGATCTTGCTATCGTAACACTCGGTCCGGTCCGATCCTAGACTGTGAA
255 TCCCCCCTACGTGCTGTCGATCCTGCTACCGTAACACTCGGTCCGGTCTGATCCTAGACTGGGAA
*
14762133 TGAACTCCGTATGCTTAGACTAGAGATGAACTTTGTATGCCTAAGTCAACCCAGGAAATGAGCGT
320 TGAACTCCGTATGCTTAGACTAGAGATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCGT
* * *
14762198 AC-AGGCGCTCAACCGGCCAGAGAGGCCGGTTGGAGAGGTATAATGTGCAAGCCGGGGATCAACC
385 GCGA-GCGCTCAACCGGCCAGAGAGGCCGGTTAGAGAGGTATAATGTGCAAGCCGGGGATCAGCC
* * * *
14762262 TGGTCCCCCTCTGCGTGCTACCGATCCCGTTGCCGGTCTTACTACCACAACCCTCGGTCCGATTG
449 TGGTCCCCCTCTGCGTGCTGCCGATCCCGTTGCC-GTCTTGCT-CCACAACCCTCAGTCCG-CT-
14762327 GGGCTTAGACAT
510 GGGCTTAGACAT
* * * **
14762339 GGAATGAACTCTGTATGCCTAAGCCAACCCAC-AGAACGAGCGTGCGGGCGCTCAGTAGGCCGGA
1 GGAATGAACTCCGTATGCCAAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCC-GA
14762403 A-AGGCAGAATACGCAAGCC-GTGGATCG
64 AGAGGCAGAATACGCAAGCCAG-GGATCG
14762430 GCCTGGTCCC
Statistics
Matches: 886, Mismatches: 177, Indels: 138
0.74 0.15 0.11
Matches are distributed among these distances:
500 3 0.00
501 94 0.11
502 4 0.00
503 1 0.00
504 4 0.00
505 4 0.00
506 2 0.00
510 4 0.00
512 6 0.01
513 6 0.01
514 240 0.27
515 27 0.03
516 1 0.00
518 2 0.00
519 4 0.00
520 5 0.01
521 5 0.01
522 3 0.00
523 3 0.00
525 1 0.00
526 24 0.03
527 307 0.35
528 13 0.01
529 6 0.01
531 4 0.00
535 3 0.00
536 4 0.00
537 4 0.00
538 1 0.00
539 5 0.01
540 93 0.10
541 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (521 bp):
GGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAG
AGGCAGAATACGCAAGCCAGGGATCGACCCGATCCCTTCTGCATGCTACCGGTCCCACTGCCACA
ACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
GACGTGCAGGCGCTCAGCTGGCTGAAGAGGTAGAATGCAAAAGTCAGGGATCAGCCCGATCCCCC
CTACGTGCTGTCGATCCTGCTACCGTAACACTCGGTCCGGTCTGATCCTAGACTGGGAATGAACT
CCGTATGCTTAGACTAGAGATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGC
GCTCAACCGGCCAGAGAGGCCGGTTAGAGAGGTATAATGTGCAAGCCGGGGATCAGCCTGGTCCC
CCTCTGCGTGCTGCCGATCCCGTTGCCGTCTTGCTCCACAACCCTCAGTCCGCTGGGCTTAGACA
T
Found at i:14761553 original size:159 final size:159
Alignment explanation
Indices: 14761260--14761556 Score: 416
Period size: 159 Copynumber: 1.9 Consensus size: 159
14761250 CTGCCAGTCT
* * *
14761260 TGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * **
14761325 CACACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAGAATACGCAAGCTGGGGATCGA
66 CACACGAAACGAGCGTGCGAGCGCTCAACCGACCGAAGAGGTAGAATACGCAAGCCAGGGATCGA
14761390 CCCGATCCTCTTTTGAGTGCTACCGGTCC
131 CCCGATCCTCTTTTGAGTGCTACCGGTCC
*
14761419 TGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * * * ** *
14761484 TTCATGAAAC-AGGCGTGTGAGCGCTCAACCGATCGAAGAGGTAGAATGTGTAAGCCAGGGATCG
66 CACACGAAACGA-GCGTGCGAGCGCTCAACCGACCGAAGAGGTAGAATACGCAAGCCAGGGATCG
*
14761548 GCCCGATCC
130 ACCCGATCC
14761557 CCAATTGTGT
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 1 0.01
159 118 0.99
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
TGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CACACGAAACGAGCGTGCGAGCGCTCAACCGACCGAAGAGGTAGAATACGCAAGCCAGGGATCGA
CCCGATCCTCTTTTGAGTGCTACCGGTCC
Found at i:14761947 original size:514 final size:506
Alignment explanation
Indices: 14760252--14762197 Score: 1441
Period size: 514 Copynumber: 3.8 Consensus size: 506
14760242 ACTCCGTATG
* * * * * *
14760252 CTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCT-CAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTTCGGGCG-TGGAG
* * * * * ** * ** *
14760315 CCAGTCGAAGAGGTAGAATGTGC-AAGCTGGGGATCGACCCGATCCCCCTTTGTGTGCTGCCAGT
64 CCGGCCGAAGAGGCATAATG-CCTAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCTACCAGT
* * ** * * **
14760379 CCCACTGCCACAACCCTTGGTTTGGCTGGAGCTTGGACATGGAATGAACTGTCTATGCCTAAGCC
128 CCCACTGCCACAACCCTCGATCCGACTGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * *
14760444 AACCCACGAAACAGGCGTGTGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCC-GAGGAT
192 AACCCACGAAACAGGCGTGTGAGCGCTCAACC-GTCGAAGAGGCAGAATGCGAAAGCCAG-GGAT
* ** *
14760508 CGGCCC-AGTCCCCAATTGCATGCTACCAATTTTGCTGCTGGTCTTGCTACCGTAACCCTCGGTC
255 CGGCCCGA-TCCCCAATTG--TGCTA-CGATCCTGCT-CTGGTCCTGCTACCGTAACCCTCGGTC
*
14760572 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTA
315 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTA
* * * * * * * *
14760637 AGCCAACCCATGAAACGA---TACGGGCACTTAGCTGGCCTTAGAGGTAGAATGCGTAAATCGGG
379 AGCTAACCCATGAAATGAGCGTGCGGGGACTCAGCAGGCCTTAGAGATAGAATGCGTAAGTCGGG
* * * ** * ** * * ** *
14760699 GACCAGCCTGGTCCCCCTTGCATGCTGTCCATCTTGCTGCCACAACTTTTGGTCTGGTCCGAT
444 GACTAGCCTGGTCCCCCTTGCATGCTGTCAATCCTGCTGCCGTAGCCCTCGATCCAGTCTGAT
* * *
14760762 CTTAGGCTAGGAATGAACTCCGTATGCCAAAGTCAACCCGCGAAACGAGCGTTCGGGCGCGGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTTCGGGCGTGGAGC
* * * * * *
14760827 CAGCCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGGTCCCTCTCTGCATGCTATCAGTCC
65 CGGCCGAAGAGGCATAATGCCTAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCTACCAGTCC
* * *
14760892 CACTGCCACAACCTTCGATCTGGCTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CACTGCCACAACCCTCGATCCGACTGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * *
14760957 CCCACGAAAC-GGACGTG-CAGGCACTCAGCTGGCTGAAGAGGCAGAATGCAAAAGTCAGGGATC
194 CCCACGAAACAGG-CGTGTGA-GCGCTCAACCGTC-GAAGAGGCAGAATGCGAAAGCCAGGGATC
* * * * * ** * * *
14761020 AGCCCGATCCCC------CCTACG-TGCTG-TC-GATCCTGTTACCGTAATGCTTGGTTCGATCT
256 GGCCCGATCCCCAATTGTGCTACGATCCTGCTCTGGTCCTGCTACCGTAACCCTCGGTCCGGTCT
* * ***
14761076 GATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAGATGAACTTTTTATGCCTAAG-TCA
321 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGA-ATGAACTCCGTATGCCTAAGCT-A
** * * * *
14761140 ACCCACAAAATGAGCGTGCGAGCG-CTCAACCGGCCAGAGAGGCCGGTCAGAGAGGTATAATGTG
384 ACCCATGAAATGAGCGTGCG-GGGACTC-A---G-C----AGGCC--TTAGAGA--TAGAATGCG
* * * * * * ** * *
14761204 CAAGTCGGGGA-TCAGCCCGATCCCCCTCTACGTGCTGCCAATCCCACTGCCAGTCTTGCTGCCA
435 TAAGTCGGGGACT-AGCCTGGTCCCCCT-TGCATGCTGTCAATCCTGCTGCC-G--TAGC--CCT
* * **
14761268 CAACCCTCAGTCCGGCTAGGG
493 CGA-TC-CAGT----CT-GAT
* * * *
14761289 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCT-CAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTTCGGGCG-TGGAG
* * * ** * * * *
14761353 CCGGCCGAAGAGGTAGAATACGC-AAGCTGGGGATCGACCCGATCCTCTTTTG-AGTGCTACCGG
64 CCGGCCGAAGAGGCATAATGC-CTAAGCCAGGGATCGACCCGATCCCCCTCTGCA-TGCTACCAG
** *
14761416 TCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
127 TCCCACTGCCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
** * * * *
14761481 CAATTCATGAAACAGGCGTGTGAGCGCTCAACCGATCGAAGAGGTAGAATGTGTAAGCCAGGGAT
191 CAACCCACGAAACAGGCGTGTGAGCGCTCAACCG-TCGAAGAGGCAGAATGCGAAAGCCAGGGAT
* *
14761546 CGGCCCGATCCCCAATTGTGTGCTATCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGATCC
255 CGGCCCGATCCCCAA-T-TGTGCTA-CGATCCTGCT-CTGGTCCTGCTACCGTAACCCTCGGTCC
* * *
14761611 GGTCTGATCTTAGACTGGGTATGAACTTCGTATGCTTAGACATGGAAAGAACTCCGTATGCCTAA
316 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAA
* *
14761676 GCTAACCCATGAAATGAGCGTGCGGGGACTCAGTC-GGCCTTAGAGATAGAATGCGTAAGCCAGG
380 GCTAACCCATGAAATGAGCGTGCGGGGACTCAG-CAGGCCTTAGAGATAGAATGCGTAAGTCGGG
* *
14761740 GACTAGCCTGGTCCCCCTTGCATGCTGTCGATCCTGTTGCCGTAGCCCTCGATCCAGTCTGAT
444 GACTAGCCTGGTCCCCCTTGCATGCTGTCAATCCTGCTGCCGTAGCCCTCGATCCAGTCTGAT
* ** * *
14761803 CTTATACTGGGAATGAACTCTATATGCCAAAGTCAACCCACGAAACGAGCGTTCGAGTGTGGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTTCGGGCGTGGAGC
* * * *
14761868 CGGCTGAAGAGGCATAATGCCTAAGCCAGGGATCGACCCAATCCCCCTCTGCATGCTGCCGGTCC
65 CGGCCGAAGAGGCATAATGCCTAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCTACCAGTCC
14761933 CACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CACTGCCACAACCCTCGATCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * * * *
14761998 CCCACGAAAC-GGACGTGCGGGTGCTCAGCTGGCCGGAGACGTAGAATGC-ACAAGTC-GAGGAT
194 CCCACGAAACAGG-CGTGTGAGCGCTCAAC-CGTCGAAGAGGCAGAATGCGA-AAGCCAG-GGAT
* * * * * * * * *
14762060 CAGCCCGGTCCCC------CCTGCG-TGCTG-T-TGATCTTGCTATCGTAACACTCGGTCCGGTC
255 CGGCCCGATCCCCAATTGTGCTACGATCCTGCTCTGGTCCTGCTACCGTAACCCTCGGTCCGGTC
* * * * **
14762116 CGATCCTAGACTGTGAATGAACTCCGTATGCTTAGACTAGAGATGAACTTTGTATGCCTAAG-TC
320 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGA-ATGAACTCCGTATGCCTAAGCT-
*
14762180 AACCCAGGAAATGAGCGT
383 AACCCATGAAATGAGCGT
14762198 ACAGGCGCTC
Statistics
Matches: 1111, Mismatches: 247, Indels: 165
0.73 0.16 0.11
Matches are distributed among these distances:
497 3 0.00
498 85 0.08
499 1 0.00
500 5 0.00
501 99 0.09
502 3 0.00
503 4 0.00
504 4 0.00
505 3 0.00
506 3 0.00
509 1 0.00
510 27 0.02
511 191 0.17
512 7 0.01
513 6 0.01
514 243 0.22
515 20 0.02
518 1 0.00
519 4 0.00
520 1 0.00
521 5 0.00
522 2 0.00
523 3 0.00
525 1 0.00
526 18 0.02
527 239 0.22
528 9 0.01
529 6 0.01
531 4 0.00
535 3 0.00
536 4 0.00
537 4 0.00
538 1 0.00
539 4 0.00
540 93 0.08
541 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (506 bp):
CTTAGACTGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTTCGGGCGTGGAGCC
GGCCGAAGAGGCATAATGCCTAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCTACCAGTCCC
ACTGCCACAACCCTCGATCCGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACAGGCGTGTGAGCGCTCAACCGTCGAAGAGGCAGAATGCGAAAGCCAGGGATCGGCCC
GATCCCCAATTGTGCTACGATCCTGCTCTGGTCCTGCTACCGTAACCCTCGGTCCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGCTAACCCATG
AAATGAGCGTGCGGGGACTCAGCAGGCCTTAGAGATAGAATGCGTAAGTCGGGGACTAGCCTGGT
CCCCCTTGCATGCTGTCAATCCTGCTGCCGTAGCCCTCGATCCAGTCTGAT
Found at i:14762686 original size:50 final size:50
Alignment explanation
Indices: 14762611--14762707 Score: 176
Period size: 50 Copynumber: 1.9 Consensus size: 50
14762601 CTCAGTTCGA
* *
14762611 CTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCATCAG
1 CTGGGGCTTAGACATGGAATCAACTCCCTATGGATAAGCCAACCCATCAG
14762661 CTGGGGCTTAGACATGGAATCAACTCCCTATGGATAAGCCAACCCAT
1 CTGGGGCTTAGACATGGAATCAACTCCCTATGGATAAGCCAACCCAT
14762708 GAAACGAGCG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.21
Consensus pattern (50 bp):
CTGGGGCTTAGACATGGAATCAACTCCCTATGGATAAGCCAACCCATCAG
Found at i:14763878 original size:158 final size:158
Alignment explanation
Indices: 14763585--14763878 Score: 387
Period size: 158 Copynumber: 1.9 Consensus size: 158
14763575 AACTCTGTAT
* *
14763585 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAGT
1 GCTTAGACATGGAATGAACTCCAATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGT
* * * * * * * *
14763650 CGATTGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCTCTCTGTGTGCTGTCGGTTC
66 CGATCGAAGAGGCAGAATGCGCAAGTCAAGGATCAGCCCGGTCCCCCACAGCGTGCTGTCGGATC
14763715 CACTGCCACAACCCTCGGTCCGACTGGG
131 CACTGCCACAACCCTCGGTCCGACTGGG
* ** *
14763743 GCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCATGAAAC-AGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCAATGCCTAAGCCAACCCACGAAACGA-GCGTACGGACGCTCA
* * *
14763807 GTCGGTCGGAG-GGCAGAATGCGCAAGTCAAGGATCAGCCTGGTCCCCCACAGCGTGCTGTC-GA
64 GTCGATCGAAGAGGCAGAATGCGCAAGTCAAGGATCAGCCCGGTCCCCCACAGCGTGCTGTCGGA
14763870 TCCTACTGC
129 TCC-ACTGC
14763879 TGGTCCTACT
Statistics
Matches: 116, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
157 4 0.03
158 69 0.59
159 43 0.37
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCAATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAGT
CGATCGAAGAGGCAGAATGCGCAAGTCAAGGATCAGCCCGGTCCCCCACAGCGTGCTGTCGGATC
CACTGCCACAACCCTCGGTCCGACTGGG
Found at i:14764666 original size:26 final size:26
Alignment explanation
Indices: 14764637--14764689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14764627 CCAGTCTGAT
14764637 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14764663 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
14764689 C
1 C
14764690 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14765410 original size:26 final size:26
Alignment explanation
Indices: 14765372--14765424 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14765362 GGCTCAAACT
*
14765372 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14765398 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14765424 C
1 C
14765425 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14765585 original size:26 final size:26
Alignment explanation
Indices: 14765556--14765608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14765546 CTGGTCTGAT
*
14765556 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14765582 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14765608 C
1 C
14765609 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14766360 original size:26 final size:26
Alignment explanation
Indices: 14766282--14766353 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
14766272 GGCTCAAACT
14766282 CTTAGAC-TGGGAATGAACTCTATATG
1 CTTAGACAT-GGAATGAACTCTATATG
14766308 CTTAGACATGGAATGAACTCTATATG
1 CTTAGACATGGAATGAACTCTATATG
14766334 CTTAGACATGGAATGAACTC
1 CTTAGACATGGAATGAACTC
14766354 CGTATGCCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 44 0.98
27 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTATATG
Found at i:14766543 original size:26 final size:26
Alignment explanation
Indices: 14766491--14766543 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14766481 CTGGTCTGAT
* *
14766491 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
14766517 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
14766543 C
1 C
14766544 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14766693 original size:935 final size:925
Alignment explanation
Indices: 14764463--14768269 Score: 4680
Period size: 919 Copynumber: 4.1 Consensus size: 925
14764453 CTTGGACTGG
* * ***
14764463 GAATGATCTCTGTATGCTTAGACATGGAATGAACTTCGTATATGTAAGCCAACCCACGAAACGAA
1 GAATGA-CTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA
* * * * * * * *
14764528 CATAGGGGTGCTCAACCGACCGGAGAGGCAGAATGCGTAAGTCGGGGACCGACACGGTCCCCCCT
65 CGTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGT-CCCCCT
* * ** ** *
14764593 ATGTGCTGTTGATCCTGCTACCGCAACCCTTGATCCAGTCTGATCTTAGACTGGGAATGAACTCC
129 ACGTGCTATTGATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCT
* ** *
14764658 ATATGCTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGACGC
194 GTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGC
* * * * * * * *
14764723 TC-AGTAGACCAGATAGGCCGGATGCGTAAGTCGAGGATCGAACGGGTGGTAGGTGGGTTCAAGC
259 TCAACT-GACCAAAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGGTGGGTTCAAGC
** * * *
14764787 ACATCTTTGTATTTCTGCCATGCCAAAGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCAG
323 ACATCTTAATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCAC
** * *
14764852 TACGCCTTCATGTGAAGTTTCGTGGTGAGATGACCCGTTTACTATTTTTCACGATTTTCGAAACT
388 TACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTACTATTTTTCACGATTTTTGAAACT
*
14764917 TTCTGCGGTTTGGGATTTTTTAAAATATTTTTAGAAAGA-TTTTTGTCCCCAAATTTGATAGAGG
453 TTTTGCGGTTTGGGATTTTTTAAAATATTTTTAGAAAGAGTTTTTGTCCCCAAATTTGATAGAGG
* * * **
14764981 TGATCCTCGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAAATTGAAGTGGAGAAGATT
518 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGAGAAGATT
* *
14765046 TTGTGACCGTTTGAAAAAATTGACCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAACCTAT
583 TTGTGACCGTTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
*
14765111 AAAATCTCAAATGCTCTTTAAGGGGG-CGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
648 AAAATCTCAAATGCTCTTTAAGGGGGTC-TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* ** * *
14765175 TATAAGGGCCAAGTTCCAGCACCCATGGCATATCATGTGCGCACACCCCCTCGGCACCCCCAATC
712 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCAATC
*
14765240 GCCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCGACGATGCTCCGGCGATGCTCCAACGATGGT
777 GCCGGAACCCCCAATGCCGCCGGTTAGGCTCTCCGACGATGCT-C--CGA-G--CCAAC-ATGGT
** * *
14765305 GCCCTAGGTGAAAAAAATGTAGCACCAGTACATGCACGAGCCCAGCATGTGCACTGTGGCTCAAA
835 GCCCCGGGTGAAAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCACTGTGGCTCAAA
14765370 CTCTTAGACTGGGAATG---AA-CTC
900 CTCTTAGACTGGGAATGAACAATCTC
14765392 ---TG------TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAAC
1 GAATGACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAAC
* * * *
14765448 GTACGGGCGCTCAGTCGGCCGAAGAGGCAGAATGTGCAAGTCGGGGACCGGCCCGGTCCCTCGTA
66 GTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGTCCC-CCTA
*
14765513 CGTGCTATTGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTG
130 CGTGCTATTGATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCTG
*
14765578 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCT
195 TATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCT
* * *
14765643 CAACTGACCAAAGAGGCAAGATGCGCAAGCCAGGGATCAAATGGGTGGTAGGTGGGTTCAAGCAC
260 CAACTGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGGTGGGTTCAAGCAC
* **
14765708 ATCTTAATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCACTA
325 ATCTTAATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCACTA
14765773 CGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTACTATTTTTCACGATTTTTGAAACTTT
390 CGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTACTATTTTTCACGATTTTTGAAACTTT
*
14765838 TTGTGGTTTGGGATTTTTTAAAATATTTTTAGAAAGAGTGAGTTTTGTCCCCAAATTTGATAGAG
455 TTGCGGTTTGGGATTTTTTAAAATATTTTTAGAAAGAGT---TTTTGTCCCCAAATTTGATAGAG
*
14765903 GTGATCCTTGTATTTTTGTTGGCATG-A-AAAAAAATTCAGCAAAAAACTCGAAGTGGAGAAGAT
517 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGAGAAGAT
* * *
14765966 TTTGTGACCGTTTGAAAAAAGTGACCCTATTTCAGACGCTTTAATGGTTACTGGCAGCAAACCTA
582 TTTGTGACCGTTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
14766031 TAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
647 TAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* **
14766096 TATAAGGGCCAAGTACTAGCACTTATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCAATC
712 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCAATC
* * * **
14766161 ACCGGAACCCCCAATGCCGTCGGTTAGGCTCTCTGACGATGCTCCG-G-C-A-ATGGTGCCTTGG
777 GCCGGAACCCCCAATGCCGCCGGTTAGGCTCTCCGACGATGCTCCGAGCCAACATGGTGCCCCGG
14766222 GTGAAAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCA-TCGTGGCTCAAACTCTTA
842 GTGAAAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCACT-GTGGCTCAAACTCTTA
14766286 GACTGGGAATGAACTCTATATGCTTAGAC
906 GACTGGGAATGAA--C-A-AT-C-T---C
*
14766315 ATGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT
1 ---GAATG-ACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
* * *
14766380 GAACGTACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGACTGACCCGGTCCCC
62 GAACGTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGTCCCC
14766445 CTACGTGCTATTGATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
127 CTACGTGCTATTGATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
*
14766510 CTGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTACGGAC
192 CTGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTACGGAC
14766575 GCTCAACTGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGGTGGGTTCAAG
257 GCTCAACTGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGGTGGGTTCAAG
**
14766640 CACATCTTAATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCA
322 CACATCTTAATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCA
*
14766705 CTATGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTACTATTTTTCACGATTTTTGAAAC
387 CTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTACTATTTTTCACGATTTTTGAAAC
* *
14766770 TTTTTGTGGTTTGGGATTTTTTAAAATATTTTTAGAAAGAGTGAGTTTTGTCCCCAAATTTGGTA
452 TTTTTGCGGTTTGGGATTTTTTAAAATATTTTTAGAAAGAGT---TTTTGTCCCCAAATTTGATA
** * *
14766835 GAGGTGATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTCAGCTAAAAACTCAAAGGCGGAGA
514 GAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAA-GTGGAGA
* * *
14766900 AGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAAA
578 AGATTTTGTGACCGTTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
14766965 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGG
643 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14767030 CCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCACACACCCCCTCGG-CCCCCC
708 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCC
* * * ** * *
14767094 AATTGTCGGAACCCCCAATGCCACCGGTTAGGCTCTCCGATAATGCTCTGGTGATGCTCCGACGA
773 AATCGCCGGAACCCCCAATGCCGCCGGTTAGGCTCTCCGACGATGCTC---CGA-G--CCAAC-A
* * *
14767159 TGGTGCCCCGGG-CAAAAGAAATGCAGCACCAGCACATGCCCAAGCCCAGCATGTGCACTGTGGC
831 TGGTGCCCCGGGTGAAAA-AAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCACTGTGGC
* *
14767223 TTAAACTCTTAGGCTGGGAATGAAC--TC-C
895 TCAAACTCTTAGACTGGGAATGAACAATCTC
**
14767251 ----G----TA-A-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAC-AAG
1 GAATGACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-
* * * * * * *
14767305 TGTACGGGCGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAG-CTGGGGATCGGCCCGATCCCCCT
65 CGTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTC-GGGGACCGACCCGGTCCCCCT
* * * * * ** *
14767369 -CTGTG-TACTG---CTGGT-CC-TACAGCCACAA-C-CCTC-AATC-T-GACTGGG---G----
129 AC-GTGCTATTGATCCTGCTACCGCA-ACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
* * * *
14767415 CT-TA--C--ACA-T-GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACG-GACGTGCGG
192 CTGTATGCTTAGACTGGGGATGAACTCCGC-ATGCCTAAGTCAACCCACGAAACGAG-CGTACGG
* * * * * * *
14767471 GCGCTTAGCTGGCCGAAA-AGGCAGGATGCACAAGTCGGGGATCGAACGGGTGGTAGGTGGGTTC
255 ACGCTCAACTGACC-AAAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGGTGGGTTC
*
14767535 AAGCACATCTTCAA-ATTTCTGCCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
319 AAGCACATCTT-AATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * * * *
14767599 CCCCCTACTCCTTCATGTGAAGTTTTGTGGCAAGACAACCCGTTTTCTATTTTGCACTATTTTTG
383 TCCACTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTACTATTTTTCACGATTTTTG
** * **
14767664 AAACTTTTTGCGGTTAAGGATTTTTTAAAATTTTTTTAGAAAG-GTTTTCATCCCCAAATTTTG-
448 AAACTTTTTGCGGTTTGGGATTTTTTAAAATATTTTTAGAAAGAGTTTTTGTCCCCAAA-TTTGA
*
14767727 TAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAG
512 TAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGAG
*
14767792 AAGATTTTGTGACCGTTTGAAAAAAGT-ATCCCCATTTCAGACACTTTAATGGCTACTGACAGCA
577 AAGATTTTGTGACCGTTTGAAAAAAGTGA-CCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
14767856 AACCTATAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATATGG
641 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** * *
14767921 GAACAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCC
706 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCC
* * * *
14767985 CCAATCGTCGGAACCCCTAATGTCC-CCGGTTAGGCTCTCCGGCGATGCTCCGGTGATGCTCCTA
771 CCAATCGCCGGAACCCCCAATG-CCGCCGGTTAGGCTCTCCGACGATGCTCC---GA-G--CCAA
** ** **
14768049 CGATGGTGCCCCGGGTGAAAAAAATGTGGCACCAGCACATGCTTGCA-CCCAGCATGTGCACCAT
829 C-ATGGTGCCCCGGGTGAAAAAAATGCAGCACCAGCACATGCACG-AGCCCAGCATGTGCACTGT
14768113 GGCTCAAACTCTTAGACTGGGAATG---AA-CTC
892 GGCTCAAACTCTTAGACTGGGAATGAACAATCTC
* * * *
14768143 ---TG----TAT-T-CTTAGGCATCGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGA
1 GAATGACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-A
* * * * * * * * *
14768199 -TTGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCT
65 CGTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGT-CCCCCT
14768263 ACGTGCT
129 ACGTGCT
14768270 GCCGGTCCCG
Statistics
Matches: 2583, Mismatches: 216, Indels: 192
0.86 0.07 0.06
Matches are distributed among these distances:
891 1 0.00
892 4 0.00
893 394 0.15
894 86 0.03
895 7 0.00
897 4 0.00
898 245 0.09
899 6 0.00
900 2 0.00
902 1 0.00
904 2 0.00
905 2 0.00
909 2 0.00
910 81 0.03
912 8 0.00
913 2 0.00
914 3 0.00
915 2 0.00
916 4 0.00
917 9 0.00
918 9 0.00
919 423 0.16
920 5 0.00
921 264 0.10
922 103 0.04
923 49 0.02
924 2 0.00
926 2 0.00
929 3 0.00
935 410 0.16
936 110 0.04
937 69 0.03
938 182 0.07
940 1 0.00
941 1 0.00
942 2 0.00
945 1 0.00
946 2 0.00
947 4 0.00
948 75 0.03
949 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (925 bp):
GAATGACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAAC
GTACGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGGTCCCCCTAC
GTGCTATTGATCCTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
ATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTC
AACTGACCAAAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGGTGGGTTCAAGCACA
TCTTAATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCACTAC
GCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTACTATTTTTCACGATTTTTGAAACTTTT
TGCGGTTTGGGATTTTTTAAAATATTTTTAGAAAGAGTTTTTGTCCCCAAATTTGATAGAGGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGGAGAAGATTTTG
TGACCGTTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
ATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCTCGGCCCCCCCAATCGCCG
GAACCCCCAATGCCGCCGGTTAGGCTCTCCGACGATGCTCCGAGCCAACATGGTGCCCCGGGTGA
AAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCACTGTGGCTCAAACTCTTAGACTG
GGAATGAACAATCTC
Found at i:14768448 original size:158 final size:158
Alignment explanation
Indices: 14768149--14768458 Score: 406
Period size: 158 Copynumber: 2.0 Consensus size: 158
14768139 ACTCTGTATT
* * * *
14768149 CTTAGGCATCGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGATTGCGGGCGCTCAGC
1 CTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGATTGCGGGCGCTCAGC
* *
14768214 CAGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGGTCCC
66 CAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCC
*
14768279 GTTGCCACAACCCTCAGTCTGGCTGGGG
131 GCTGCCACAACCCTCAGTCTGGCTGGGG
* * *
14768307 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGTGTGCGGGCGCTTAG
1 CTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAT-TGCGGGCGCTCAG
* * * * * * * * *
14768371 CCGGCCGGAGAGGTAGAATGCGCAAGCTGGGGCTTGGCTCGGTCCCCCCTTCGTGCTGTCGATCC
65 CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCC
* * *
14768436 TGCTGCCGCAACCCTCGGTCTGG
130 CGCTGCCACAACCCTCAGTCTGG
14768459 TTTGATCTTA
Statistics
Matches: 129, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
157 2 0.02
158 127 0.98
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.18
Consensus pattern (158 bp):
CTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGATTGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCC
GCTGCCACAACCCTCAGTCTGGCTGGGG
Found at i:14769203 original size:158 final size:158
Alignment explanation
Indices: 14768701--14769203 Score: 512
Period size: 159 Copynumber: 3.2 Consensus size: 158
14768691 ACTCTGTATG
* ** * * * * * *
14768701 CTTAGACATGGAATGAGCTATGTATGCCCAAGCCAACCCACGGAACGAGCGTGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * *
14768766 TGGCCGGAGAGGTAGAATGTGCAAGTCGGGGAGCAGCCCGGTCCCCCCTTGCGTGCTGTCAATCC
66 AGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCC-TGCGTGCTGTCGATCA
* **
14768831 TGCTGCCACAACCCTTGGTCCA-GTCCGAT
130 TGCTGCCACAACCCTCGGT-CAGGTTAGAT
* * *
14768860 CTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAGCGAT-CGGG-AGCTG
1 CTTAGACAT-GGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCG-TGCGGGCA-CTC
* * *
14768922 AACAGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTTGCGTGCTGTCGA
63 AGCAGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGA
* * * **
14768987 TCTTGCTACCACAACCCTCGGTCCGGTTAGGG
127 TCATGCTGCCACAACCCTCGGTCAGGTTAGAT
* * *
14769019 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * ** * *
14769084 CGACCAGAGAGGCAAAATGCATAAGCCGGGGATCAACCTGGTCCCCCCTGCGTGCTGTCGATCAT
66 AGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCAT
* *
14769149 GCTGCCGCAACCCTCGATCAGGTTAGAT
131 GCTGCCACAACCCTCGGTCAGGTTAGAT
*
14769177 CTTAGAC-TAGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14769204 TTAGACAGGG
Statistics
Matches: 281, Mismatches: 54, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 64 0.23
159 213 0.76
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
AGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCAT
GCTGCCACAACCCTCGGTCAGGTTAGAT
Found at i:14769425 original size:26 final size:26
Alignment explanation
Indices: 14769374--14769426 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14769364 CTGGTCCGAT
** *
14769374 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
14769400 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
14769426 C
1 C
14769427 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:14769509 original size:197 final size:196
Alignment explanation
Indices: 14769174--14769534 Score: 517
Period size: 197 Copynumber: 1.8 Consensus size: 196
14769164 GATCAGGTTA
* * * * *
14769174 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACAGGGGATGAACTCCGTCTGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCTATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
* *
14769239 CCCAAGGAACAAGCGTGCGGACACTCAACCGGCCGAAGAGGCAGAATGCGTAAGTCAAGGATCGG
66 CCCAA-GAACAAGCGTGCGGACACTCAACCAGCCGAAGAGGCAGAATGCGTAAGCCAAGGATCGG
**
14769304 CCCGGTCCCCCTTTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAAACCTTGATCTGGT
130 CCCGGTCCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAAACCTTGATCTGGT
14769369 CC
195 CC
*
14769371 GATCTTAGACTGGGAATGAACTCTATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTCTATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * * *
14769436 CCAACAA-AATGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGGCAGAATGTGTAAGCCGAGGATCG
66 CC--CAAGAACAAGCGTGCGGACACTCAACCAGCCGAAGAGGCAGAATGCGTAAGCCAAGGATCG
*
14769500 GCCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTG
129 GCCCGGTCCCCCCCTACGTGCTGTCGATCCTGCTG
14769535 TCGCAACCCT
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
197 140 0.98
199 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (196 bp):
GATCTTAGACTAGGAATGAACTCTATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
CCCAAGAACAAGCGTGCGGACACTCAACCAGCCGAAGAGGCAGAATGCGTAAGCCAAGGATCGGC
CCGGTCCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAAACCTTGATCTGGTC
C
Found at i:14769596 original size:699 final size:703
Alignment explanation
Indices: 14768159--14769771 Score: 1839
Period size: 699 Copynumber: 2.3 Consensus size: 703
14768149 CTTAGGCATC
* * * ** * * * *
14768159 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAG-ATTGCGGGCGCTCAGCCAG-CTGGA
1 GAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCA-TGCGGGAGCTGA-ACAGACCGGA
* * * *
14768222 GAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGCCGGTCCCGTTGCCA
64 GAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTG-CGATCCTGTTGCCA
* * *
14768286 CAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
128 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * * * * * * * ***
14768351 ACGGGTGTGCGGGCGCTTAGCCGGCCGGAGAGGTAGAATGCGCAAGCTGGGGCTTGGCTCGGTCC
193 ACGGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGATAACCTCGGTCC
* * * * * *
14768416 CCCCTTCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGA
258 CCCCTGCGTGCTGTCGATCATGCTGCCGCAACCCTCGATCAGGTTAGATCTTAGACTAGGAATGA
* * * * *
14768481 ACTTCATATGCTTAGACTGGGGATGAACTCTGTCTACCTAAGTCAACCCACGGAACGATCGTGCG
323 ACTTCATATGCTTAGACAGGGGATGAACTCCGTCTACCTAAGTCAACCCAAGGAACAAGCGTGCG
*** *
14768546 GGTGCTCAACCGGCCGAAGAGGCCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGACCAACCCGGT
388 GACACTCAA-C--CC----AGGCCGG-CAGAGAGGCAGAATGCGCAAGCCAAGGACCAACCCGGT
* * * * * ** * *
14768611 CCCCCCTTACGTGTTGCCGATCTTGCTGCTGGTCTTGCTGCTGTATCCCTTGGTTCGATCTGATC
445 CCCCCCTTACGTGCTGCCGATCCTGCTGCTGGTCCTACTGCTGCAAACCTTGATTCGATCCGATC
* * * * * *
14768676 TTAGACTGTGAAAGAACTCTGTATGCTTAGACATGGAATGAGCTATGTATGCCCAAGCCAACCCA
510 TTAGACTGGGAAAGAACTCTATATGCTTAGACAAGGAATGAACTACGTATGCCCAAGCCAACCAA
** *** * * * *
14768741 CGGAACGAGCGTGCAGGCGCTCAGTTGGCCGGAGAGGTAGAATGTGCAAGTCGGGGAGCAGCCCG
575 CAAAACGAGCGTGCAGGCGCTCAGCCAGCCGAAGAGGCAGAATGTGCAAGCCGAGGAGCAGCCCG
*
14768806 GTCCCCCCTTGCGTGCTGTCAATCCTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGACTGG
640 GTCCCCCCCTGCGTGCTGTCAATCCTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGACTGG
*
14768870 GAATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAGCGAT-CGGGAGCTGAACAGACCGGAG
1 GAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGC-ATGCGGGAGCTGAACAGACCGGAG
* * * * * *
14768934 AGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTTGCGTGCTGTCGATCTTGCTACCAC
65 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTG-CGATCCTGTTGCCAC
* *
14768999 AACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
129 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
*
14769064 CGGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCATAAGCCGGGGATCAACCT-GGTCC
194 CGGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGAT-AACCTCGGTCC
14769128 CCCCTGCGTGCTGTCGATCATGCTGCCGCAACCCTCGATCAGGTTAGATCTTAGACTAGGAATGA
258 CCCCTGCGTGCTGTCGATCATGCTGCCGCAACCCTCGATCAGGTTAGATCTTAGACTAGGAATGA
* *
14769193 AC-TCTGTATGCTTAGACAGGGGATGAACTCCGTCTGCCTAAGTCAACCCAAGGAACAAGCGTGC
323 ACTTC-ATATGCTTAGACAGGGGATGAACTCCGTCTACCTAAGTCAACCCAAGGAACAAGCGTGC
* * * ** *
14769257 GGACACTCAA-CC-GGCC-G-A-AGAGGCAGAATGCGTAAGTCAAGGATCGGCCCGGTCCCCCTT
387 GGACACTCAACCCAGGCCGGCAGAGAGGCAGAATGCGCAAGCCAAGGACCAACCCGGTCCCCCCT
* * *
14769317 TACGTGCTGTCGATCCTGCTGCTGGTCCTACT-ATCGCAAACCTTGA-TCTGGTCCGATCTTAGA
452 TACGTGCTGCCGATCCTGCTGCTGGTCCTACTGCT-GCAAACCTTGATTC-GATCCGATCTTAGA
* * *
14769380 CTGGGAATGAACTCTATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAA
515 CTGGGAAAGAACTCTATATGCTTAGACAAGGAATGAACTACGTATGCCCAAGCCAACCAACAAAA
* * * * * *
14769445 TGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGGCAGAATGTGTAAGCCGAGGATCGGCCCGGTCCC
580 CGAGCGTGCAGGCGCTCAGCCAGCCGAAGAGGCAGAATGTGCAAGCCGAGGAGCAGCCCGGTCCC
* * * * *
14769510 CCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTTGGTTCGGTCCGATCTTAGACTGG
645 CCCCTGCGTGCTGTCAATCCTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGACTGG
* *** * * * * ** *
14769569 GAATGAACTCTGTATGCTTGAGTCAACCCACGAAACGAGCATGCGGGTGCTGAGCCGGGCAGAGA
1 GAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCATGCGGGAGCTGAACAGACCGGAGA
* * * * ** * *
14769634 GGCATAATACGTAAGTCAGGGATCGGCTTGATCCCCCTCTACGTGCTGCCAGTCCTGTTGCCACA
66 GGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCGA-TCCTGTTGCCACA
* *
14769699 ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
130 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
*
14769764 GAGCGTGC
195 GGGCGTGC
14769772 AGGTGCTCAA
Statistics
Matches: 758, Mismatches: 134, Indels: 32
0.82 0.15 0.03
Matches are distributed among these distances:
698 7 0.01
699 406 0.54
700 1 0.00
702 1 0.00
703 4 0.01
708 2 0.00
710 3 0.00
711 85 0.11
712 246 0.32
713 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (703 bp):
GAATGAACTCCGTATGCCAAAGTCAACCCACGAAACAAGCATGCGGGAGCTGAACAGACCGGAGA
GGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCGATCCTGTTGCCACAA
CCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
GGCGTGCGGGCACTCAGCCGACCAGAGAGGCAAAATGCACAAGCCGGGGATAACCTCGGTCCCCC
CTGCGTGCTGTCGATCATGCTGCCGCAACCCTCGATCAGGTTAGATCTTAGACTAGGAATGAACT
TCATATGCTTAGACAGGGGATGAACTCCGTCTACCTAAGTCAACCCAAGGAACAAGCGTGCGGAC
ACTCAACCCAGGCCGGCAGAGAGGCAGAATGCGCAAGCCAAGGACCAACCCGGTCCCCCCTTACG
TGCTGCCGATCCTGCTGCTGGTCCTACTGCTGCAAACCTTGATTCGATCCGATCTTAGACTGGGA
AAGAACTCTATATGCTTAGACAAGGAATGAACTACGTATGCCCAAGCCAACCAACAAAACGAGCG
TGCAGGCGCTCAGCCAGCCGAAGAGGCAGAATGTGCAAGCCGAGGAGCAGCCCGGTCCCCCCCTG
CGTGCTGTCAATCCTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGACTGG
Found at i:14769796 original size:159 final size:158
Alignment explanation
Indices: 14769399--14769800 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 158
14769389 AACTCTATAT
* * * * *
14769399 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** * * * *
14769464 CCAGTCGAAGAGGCAGAATGTGTAAGCCGAGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGATC
66 CCGGTCGAA-AGGCAGAATACGTAAGCAGAGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATC
* * * * *
14769529 CTGCTGTCGCAACCCTTGGTTCGGTCCGA
130 CTGCTGCCACAACCCTCGGTCCGCTCCGA
* * * * * * *
14769558 TCTTAGAC-TGGGAATGAACTCTGTATGCTTGAGTCAACCCACGAAACGAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * ** *
14769622 GCCGGGCAGAGAGGCATAATACGTAAGTCAG-GGATCGGCTTGATCCCCCTCTACGTGCTGCC-A
65 GCCGGTC-GAAAGGCAGAATACGTAAG-CAGAGGATCGGCCCGATCCCCCCCTACGTGCTGCCGA
* * *
14769685 GTCCTGTTGCCACAACCCTCGGTCCAGCT-GGG
128 -TCCTGCTGCCACAACCCTCGGTCC-GCTCCGA
* * *
14769717 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
14769782 CCGGTCGGAAAGGCAGAAT
66 CCGGTC-GAAAGGCAGAAT
14769801 GTGCAAGCTG
Statistics
Matches: 190, Mismatches: 47, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
158 1 0.01
159 182 0.96
160 7 0.04
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGAAAGGCAGAATACGTAAGCAGAGGATCGGCCCGATCCCCCCCTACGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTCCGCTCCGA
Found at i:14770210 original size:26 final size:26
Alignment explanation
Indices: 14770159--14770211 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14770149 CCAGTTCGAT
* *
14770159 CTTAGACTTGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14770185 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14770211 C
1 C
14770212 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14771019 original size:638 final size:640
Alignment explanation
Indices: 14770197--14771570 Score: 1949
Period size: 638 Copynumber: 2.1 Consensus size: 640
14770187 TAGACTGGGG
* * * * *** * *
14770197 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGTCGA-CGGAGAGG
1 ATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGAATGGGTGCTCAGCCGACCGGAGAGG
* * *
14770261 CAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCATGCGTGCTACCGATCCTGCTGTTGGTCC
66 CCGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCCATGCGTGCTACCGATCCTGCTGTTGGTCC
14770326 TGCTACCGCAACCCTCAGTTCGATCTGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTTCGATCTGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14770391 CCCACGAAATGAGCATGTGGGTGTTCAGTAACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
196 CCCACGAAATGAGCATGTGGGTGTTCAGTAACTAGAGAGGCAGAATGCGCAAGCCGGGGACCGAC
14770456 TCGATCCCTACTGCGTGCTATCAATCCATTGTTGCAACCCTCGATTTGGTCTGATCTTAGACTGG
261 TCGATCCCTACTGCGTGCTATCAATCCATTGTTGCAACCCTCGATTTGGTCTGATCTTAGACTGG
* * ** * * *
14770521 GAATGAACTTCGTATGCCTAAGTCC-ACCCACGAAATGAGTGTTTGGGCGCTGAACCGGCCGGAG
326 GAATGAACTCCGTATGCCTAAG-CCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGAAG
* * * * * *
14770585 AGGCATAATGCACAAGAGGGGGATCGA-CTCGATCCCCCTCTGAGTGCTGTCGATCCTGCTGCCA
390 AGGCAGAATGCACAAGACGAGGA-CCACCCCGATCCCCCT-TGAGTGCTGTCGATCCTGCTACCA
*
14770649 CAACCCTCAG-TCCTG-CTGGAGCTTACACAT-GGAATGAACTCCATATGCCTAAGCCAACCC-A
453 CAACCCTC-GTTCCGGTCT-GAGCTTACAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCAA
* * * * * * * *
14770710 CGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGTGGATC-GGCCTAGT-T
515 CAAGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGGCC-AGTCC
** * * *
14770773 CCC-ATGCATGTTGCCGATCCTACTGTCGTAACCCTCGATCCGGCTAGGGTTTATACATGGA
579 CCCTATGCATACTGCAGATCCTACTGCCATAACCCTCGATCCGGCTAGGGTTTATACATGGA
14770834 ATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGAATGGGTGCTCAGCCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGAATGGGTGCTCAGCCGACCGGAGAGG
*
14770899 CCGAATGTGTAAGTCGGGGATCGGCCTGGTCCCCCCATGCGTGCTACCGATCCTGCTGTTGGTCC
66 CCGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCCATGCGTGCTACCGATCCTGCTGTTGGTCC
14770964 TGCTACCGCAACCCTCAGTTCGATCTGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTTCGATCTGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
14771029 CCCACGAAATGAGCATGTGGGTGTTCAGTAACTAGAGAGGCAGAATGCGCAAGCCGGGGACCGAC
196 CCCACGAAATGAGCATGTGGGTGTTCAGTAACTAGAGAGGCAGAATGCGCAAGCCGGGGACCGAC
*
14771094 TCGATCCCTACTGCGTGCTATCAATCCATTGTTGCAACCCTCGATTTGTTCTGATCTTAGACTGG
261 TCGATCCCTACTGCGTGCTATCAATCCATTGTTGCAACCCTCGATTTGGTCTGATCTTAGACTGG
* * *
14771159 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGTGCGCTCAGCCGATCGAAGA
326 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGAAGA
* * * * * * *
14771224 GGCAGAATGCGCAAGTCGAGGACCACCCCGATCCCCCTTGCGTGTTGTTGATCTTGCTACCAGAA
391 GGCAGAATGCACAAGACGAGGACCACCCCGATCCCCCTTGAGTGCTGTCGATCCTGCTACCACAA
* * * * *
14771289 CCCTCGTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCATGAAACA
456 CCCTCGTTCCGGTCTGAGCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCC----AACA
* * * * * * * *
14771354 AGCGTACGGGTATTGAGCCGGCCGGAGAGGCATACTGCACAAGCCGGGGATCAGTCCGGTCCCCC
517 AGCGTACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGGCCAGTCCCCC
* * *
14771419 TCTGCGTACTGCAGATCCTGCTGCCATAACCCTCGATCCGGCTAGGGTTTATACATGGA
582 TATGCATACTGCAGATCCTACTGCCATAACCCTCGATCCGGCTAGGGTTTATACATGGA
14771478 ATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGAATGGGTGCTCAGCCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGAATGGGTGCTCAGCCGACCGGAGAGG
*
14771543 CCGAATGCGTAAGTCGGGGATCAGCCTG
66 CCGAATGCGTAAGTCGGGGATCGGCCTG
14771571 TTACCCCTGC
Statistics
Matches: 652, Mismatches: 71, Indels: 21
0.88 0.10 0.03
Matches are distributed among these distances:
636 2 0.00
637 116 0.18
638 343 0.53
642 44 0.07
643 6 0.01
644 141 0.22
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (640 bp):
ATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGAATGGGTGCTCAGCCGACCGGAGAGG
CCGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCCATGCGTGCTACCGATCCTGCTGTTGGTCC
TGCTACCGCAACCCTCAGTTCGATCTGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAATGAGCATGTGGGTGTTCAGTAACTAGAGAGGCAGAATGCGCAAGCCGGGGACCGAC
TCGATCCCTACTGCGTGCTATCAATCCATTGTTGCAACCCTCGATTTGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGAAGA
GGCAGAATGCACAAGACGAGGACCACCCCGATCCCCCTTGAGTGCTGTCGATCCTGCTACCACAA
CCCTCGTTCCGGTCTGAGCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCCAACAAGCG
TACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGGCCAGTCCCCCTATG
CATACTGCAGATCCTACTGCCATAACCCTCGATCCGGCTAGGGTTTATACATGGA
Done.