Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 114 of 402
Found at i:14771336 original size:158 final size:155
Alignment explanation
Indices: 14770952--14771351 Score: 414
Period size: 156 Copynumber: 2.5 Consensus size: 155
14770942 CTACCGATCC
* * * *
14770952 TGCTGTTGGTCCTGCTACCGCAACCCTCAGTTCGATCTGATTTTAGATTGGGAATGAACTCCGTA
1 TGCTGTTGATCTTGCTACCG-AACCCTC-GTTCGATCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
14771017 TGCCTAAGCCAACCCACGAAATGAGCATGTGGGTGTTCAGTAACTAGAGAGGCAGAATGCGCAAG
64 TGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGGAACGAGAGAGGCAGAATGCGCAAG
* *
14771082 CCGGGGACCGACTCGATCCCTACTGCG
129 CCGAGGACCGACCCGATCCCTACTGCG
* ** ** * *
14771109 TGCTATCAATCCATTG-TTGC-AACCCTCGATTTGTTCTGATCTTAGACTGGGAATGAACTCCGT
1 TGCTGTTGAT-C-TTGCTACCGAACCCTCG-TTCGATCTGATCTTAGACTGGGAATGAACTCCGT
* * *
14771172 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGTGCGCTCAGCCGATCGA-AGAGGCAGAATGCGC
63 ATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG--GAACGAGAGAGGCAGAATGCGC
* *
14771236 AAGTCGAGGACC-ACCCCGATCCC-CCTTGCG
126 AAGCCGAGGACCGA-CCCGATCCCTAC-TGCG
* * *
14771266 TGTTGTTGATCTTGCTACCAGAACCCTCGTTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTG
1 TGCTGTTGATCTTGCTACC-GAACCCTCGTT-CGATCTGATCTTAGACTGGGAATGAACTCCGTA
* *
14771331 TGCCTAAGTCAACCCATGAAA
64 TGCCTAAGCCAACCCACGAAA
14771352 CAAGCGTACG
Statistics
Matches: 198, Mismatches: 34, Indels: 21
0.78 0.13 0.08
Matches are distributed among these distances:
155 4 0.02
156 78 0.39
157 51 0.26
158 63 0.32
159 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (155 bp):
TGCTGTTGATCTTGCTACCGAACCCTCGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGGAACGAGAGAGGCAGAATGCGCAAGCC
GAGGACCGACCCGATCCCTACTGCG
Found at i:14771561 original size:159 final size:157
Alignment explanation
Indices: 14770987--14771649 Score: 492
Period size: 158 Copynumber: 4.2 Consensus size: 157
14770977 CTCAGTTCGA
* * *
14770987 TCTGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC-ATGTGGGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGA--TGGGT
* ** ** * * *
14771051 GTTCAG-TAACTAGAGAGGCAGAATGCGCAAGCCGGGGA-CCGACTCGAT--CCCTACTGCGTGC
64 GCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAG-C-CGGTCCCCCT-CTGCGTGC
* * * ** *
14771112 T-ATCAATCCATTGTTG-C--AACCCTCGATTTGT
126 TGCT-GATCC--TGCTGCCAGAACCCTCGATCCGG
* *
14771143 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCG-TGCGTGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGATG-G-GT
* * * * * * *
14771207 GCTCAGCCGATCGAAGAGGCAGAATGCGCAAGTCGAGGACCACCCCGATCCCCCT-TGCGTGTTG
64 GCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCA-GCCGGTCCCCCTCTGCGTGCTG
* * * *
14771271 TTGATCTTGCTACCAGAACCCTCGTTCCGG
128 CTGATCCTGCTGCCAGAACCCTCGATCCGG
* * * * * *
14771301 TCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCATGAAACAAGCGTACGGGTA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-ATGGGTG
* * * * * * * *
14771366 TTGAGCCGGCCGGAGAGGCATACTGCACAAGCCGGGGATCAGTCCGGTCCCCCTCTGCGTACTGC
65 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCGGTCCCCCTCTGCGTGCTGC
* *
14771431 AGATCCTGCTGCCATAACCCTCGATCCGG
129 TGATCCTGCTGCCAGAACCCTCGATCCGG
* * * * *
14771460 -CTAGGGT-TTATACAT-GGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGAATGG
1 TCT--GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-ATGG
* * * **
14771522 GTGCTCAGCCGACCGGAGAGGCCGAATGCGTAAGTCGGGGATCAGCCTGTTACCC-CTGCGTGCT
62 GTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCGGTCCCCCTCTGCGTGCT
* ** * * * *
14771586 GCTGATCCTACTGCCACCAGCCTCGGTCTGA
127 GCTGATCCTGCTGCCAGAACCCTCGATCCGG
*
14771617 TCTGATCTTAGACTGGGAATGAACTCCATATGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGC
14771650 TTAGACTGGG
Statistics
Matches: 396, Mismatches: 89, Indels: 43
0.75 0.17 0.08
Matches are distributed among these distances:
154 2 0.01
155 4 0.01
156 64 0.16
157 91 0.23
158 117 0.30
159 114 0.29
160 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (157 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGATGGGTGC
TCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCGGTCCCCCTCTGCGTGCTGCTG
ATCCTGCTGCCAGAACCCTCGATCCGG
Found at i:14771659 original size:26 final size:26
Alignment explanation
Indices: 14771623--14771675 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14771613 CTGATCTGAT
14771623 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14771649 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14771675 C
1 C
14771676 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14772683 original size:157 final size:158
Alignment explanation
Indices: 14772382--14772673 Score: 365
Period size: 157 Copynumber: 1.9 Consensus size: 158
14772372 AACTCCATAT
* * * * *
14772382 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGTGCTCAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAG
* * * ** *
14772447 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTTTGTGATCTCCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTACGTGATCGCCGATCC
14772512 CACTGCCACAACCCTTGATCCAGCTGGG
131 CACTGCCACAACCCTTGATCCAGCTGGG
* * * *
14772540 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCATGTGGGCGTTTAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAG
** * *
14772604 CCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCTGGTCCACCCTACGTGGT-GCCGAT
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCGGTCC-CCCTACGTGATCGCCGAT
*
14772667 CCTACTG
129 CCCACTG
14772674 TCGTAACCCT
Statistics
Matches: 112, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
156 1 0.01
157 58 0.52
158 53 0.47
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTACGTGATCGCCGATCC
CACTGCCACAACCCTTGATCCAGCTGGG
Found at i:14772748 original size:26 final size:26
Alignment explanation
Indices: 14772698--14772750 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14772688 CCAGTCCAAT
**
14772698 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14772724 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14772750 C
1 C
14772751 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14772945 original size:26 final size:26
Alignment explanation
Indices: 14772907--14772959 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14772897 TCGGTCCGAT
*
14772907 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14772933 CTTAGAC-GCGGAATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTTCGTATG
14772959 C
1 C
14772960 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14773280 original size:159 final size:158
Alignment explanation
Indices: 14772932--14773342 Score: 425
Period size: 159 Copynumber: 2.6 Consensus size: 158
14772922 AACTTTGTAT
** * * *
14772932 GCTTAGACGCGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * *
14772997 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGACTGACCCGGTCCCCTCTGCGTGCTGTCGATCC
66 CAGACCGAAGAGGCAGAATGCGCAAGCCGAGGACTGACCCGGTCCCCTCTGCATGCTGCCGATCC
* *
14773062 TACTGCCACAACCCTCAGTCTGATCTGA
131 TACTACCACAACCCTCAGTCTGAGCTGA
* * ** * * *
14773090 TCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCGGGCGCTGAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * *
14773155 CAGACCGAAGAGGCATAATGCGCAAGCC-AGAGA-TTAGCCTGGTCCCCCTCTGCATGCTGCCGA
66 CAGACCGAAGAGGCAGAATGCGCAAGCCGAG-GACTGA-CCCGGT-CCCCTCTGCATGCTGCCGA
* * * * *
14773218 TCCTGCTACCACAGCCCTCATTTTG-GCTGGG
128 TCCTACTACCACAACCCTCAGTCTGAGCT-GA
* * * * *
14773249 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATC-AAACGGGCGTACGGGTGCTCA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCATGCGGGCGCTCA
*** * *
14773313 GTTGGCCGGAGAGGCAGAATGCGCAAGCCG
65 ACAGACCGAAGAGGCAGAATGCGCAAGCCG
14773343 GGGATCGACT
Statistics
Matches: 205, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.02
158 89 0.43
159 111 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
CAGACCGAAGAGGCAGAATGCGCAAGCCGAGGACTGACCCGGTCCCCTCTGCATGCTGCCGATCC
TACTACCACAACCCTCAGTCTGAGCTGA
Found at i:14773360 original size:159 final size:159
Alignment explanation
Indices: 14772932--14773433 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 159
14772922 AACTTTGTAT
** *
14772932 GCTTAGACGCGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * *
14772997 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGA-CTGACCCGGT-CCCCTCTGCGTGCTGTCGAT
66 CAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACTCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
14773060 CCTACTGCCACAACCCTCAGTCTGATCTGA
130 CCTGCTACCACAACCCTCAGTCTGAGCTGA
* * ** * * * * *
14773090 TCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCGGGCGCTGAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * * * * *
14773155 CAGACCGAAGAGGCATAATGCGCAAGCCAGAGATTAGCCT-GGTCCCCCTCTGCATGCTGCCGAT
66 CAGACCGGAGAGGCAGAATGCGCAAGCCGGGGA-TCGACTCGGTCCCCCTCTGCGTGCTGTCGAT
* * * *
14773219 CCTGCTACCACAGCCCTCATTTTG-GCTGGG
130 CCTGCTACCACAACCCTCAGTCTGAGCT-GA
* * *
14773249 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATC-AAACGGGCGTACGGGTGCTCA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGTGCTCA
*** * * * *
14773313 GTTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCC-GTGCGTGCTGTCAAT
65 ACAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGAT
* * ** *
14773377 CCTGCTATCGCAACCCTTGGTCTG-GTCCGA
130 CCTGCTACCACAACCCTCAGTCTGAG-CTGA
* **
14773407 TCTTAGACTGGGAATGAACTCCGTATG
1 GCTTAGACAAGGAATGAACTCCGTATG
14773434 GTTAGACTGG
Statistics
Matches: 269, Mismatches: 68, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
158 144 0.54
159 124 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGATC
CTGCTACCACAACCCTCAGTCTGAGCTGA
Found at i:14773438 original size:26 final size:26
Alignment explanation
Indices: 14773409--14773459 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14773399 TGGTCCGATC
14773409 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
14773435 TTAGACTGGGGATGAAGTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14773460 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:14773594 original size:184 final size:184
Alignment explanation
Indices: 14773262--14774011 Score: 524
Period size: 184 Copynumber: 3.9 Consensus size: 184
14773252 TAGACAAGGA
* * * * * * * *** *
14773262 ATGAACTCCCTATGCCTAAGCCAACCCATCAAACGGGC-GTACGGGTGCTCAGTTGGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCATTAAA-TGACTGTGCGGGCGCTCAGCCAGCCAGAGAG
* * * * * * *
14773326 GCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCGTGCGTGCTGTCAATCCTGCTATCGCAAC
65 GCAGAATGCGCAAGCCGGGAATCGACTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAAC
* * ** * *
14773391 CCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGG
130 ACTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGG
*
14773446 ATGAAGTCCGTATGCCTAAGTCAACCCATTAAATGACTGTGCGGGCGCTCAGCCAGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATTAAATGACTGTGCGGGCGCTCAGCCAGCCAGAGAGG
* * *
14773511 CAGAATGCGCAAGTCGGTAATCGGCTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAACA
66 CAGAATGCGCAAGCCGGGAATCGACTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAACA
* *
14773576 CTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGG
131 CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGG
** * * * *
14773630 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCACTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATTAAATGACTGTGCGGGCGCTCAG-C---C----A-G
* * * * * * * *
14773695 CTGGTC-GAAGAGGCAGAATGCTCAAGCCGGGGATTGACCCGATCCCCCCTGCATGCTGTCGATC
57 C----CAG-AGAGGCAGAATGCGCAAGCCGGGAATCGACTCGATCCCCCCTGCGTACTGTCAATA
* * * *
14773759 CTGCTGCTAGTTTTGCTACCGTAA-ACCTCGGTTC-GATCCCATCTTAGACTGGGAATGAACTCT
117 CTGC--C-A------CCA-C--AACA-CTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCC
* *
14773822 ATATGCTTAGACAT-GGA
168 GTATGCTTAGA-ATGGGG
* ** * * * *
14773839 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC-GTGCGGGCGCTCAACCGGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCATTAAATGA-CTGTGCGGGCGCTCAGCCAGCCAGAGAG
* * * * * * * * * **
14773903 GCAGAATGTGCAAGCCGGGGA-CTGACCCGATCCCCTCTGCATGCTATCGATCCTGCTGCCACAA
65 GCAGAATGCGCAAGCCGGGAATC-GACTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAA
* * *
14773967 CCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
129 CACTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14774012 CTAAGGCAAC
Statistics
Matches: 456, Mismatches: 75, Indels: 70
0.76 0.12 0.12
Matches are distributed among these distances:
183 2 0.00
184 233 0.51
185 2 0.00
186 1 0.00
187 2 0.00
188 1 0.00
192 1 0.00
193 2 0.00
196 56 0.12
197 51 0.11
199 1 0.00
200 3 0.01
205 1 0.00
206 2 0.00
207 1 0.00
208 3 0.01
209 92 0.20
210 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGTCAACCCATTAAATGACTGTGCGGGCGCTCAGCCAGCCAGAGAGG
CAGAATGCGCAAGCCGGGAATCGACTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAACA
CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGG
Found at i:14773628 original size:26 final size:26
Alignment explanation
Indices: 14773592--14773644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14773582 CCAGTTCGAT
* *
14773592 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
14773618 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14773644 C
1 C
14773645 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14773852 original size:26 final size:26
Alignment explanation
Indices: 14773801--14773853 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14773791 TCGATCCCAT
*
14773801 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14773827 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14773853 C
1 C
14773854 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14774235 original size:159 final size:159
Alignment explanation
Indices: 14773826--14774272 Score: 512
Period size: 159 Copynumber: 2.8 Consensus size: 159
14773816 AACTCTATAT
14773826 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * * *
14773891 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGA-CTGACCCGAT-CCCCTCTGCATGCTATCGAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATC-GACTCGGTCCCCCTCTGCGTGCTGTCGAT
*
14773954 CCTGCTGCCACAACCCTCAGTCCAGTCTGA
130 CCCGCTGCCACAACCCTCAGTCCAGTCTGA
* * * * *
14773984 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
*** * * *
14774048 ACCAATCGGAGAGGCATAATGCGCAAGCTAGGGATC-AGCTTGGTCCCCCTCTGCGTGCTGCCGA
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGA-CTCGGTCCCCCTCTGCGTGCTGTCGA
* *
14774112 TCCCGCTGCCACAACCCTCATTTCAG-CT-A
129 TCCCGCTGCCACAACCCTCAGTCCAGTCTGA
* * * * *
14774141 CGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTC
1 --GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
14774206 AGCCGGCCGGAGACGCAGAATGCACAAGCTCGAGATCGACTCGGTCCCCC-CTACGTGCTGTCGA
64 AACCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGA
14774270 TCC
129 TCC
14774273 TGCTACTGCA
Statistics
Matches: 238, Mismatches: 43, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 104 0.44
159 129 0.54
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACTCGGTCCCCCTCTGCGTGCTGTCGATC
CCGCTGCCACAACCCTCAGTCCAGTCTGA
Found at i:14774328 original size:158 final size:155
Alignment explanation
Indices: 14773827--14774328 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 155
14773817 ACTCTATATG
14773827 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
14773891 CCGGCCGGAGAGGCAGAATGTGCAAGC-CGGGGA-CTGACCCGATCCCCTCTGCATGCTATCGAT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTC-GGGATC-GACTCGGTCCCCCCTGCGTGCTGTCGAT
* * *
14773954 CCTGCTGCCACAACCCTCAGTCCAGTCTGAT
128 CCTGCTGCCACAACCCT-TGT-CAGTC-AAA
* * * * *
14773985 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTACGGGCGCTGAAC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
*** * * * *
14774050 CAATCGGAGAGGCATAATGCGCAAGCTAGGGATC-AGCTTGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCGGAGAGGCAGAATGCGCAAGCTCGGGATCGA-CTCGGTCCCCC-CTGCGTGCTGTCGATC
* * **
14774114 CCGCTGCCACAACCCTCATTTCAG-CTACGG
129 CTGCTGCCACAACCCT--TGTCAGTC-A-AA
* * * * * *
14774144 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
14774208 CCGGCCGGAGACGCAGAATGCACAAGCTCGAGATCGACTCGGTCCCCCCTACGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTCGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCC
* **
14774273 TGCTACTGCAACCCTTGGTCTAGTTCAAA
130 TGCTGCCACAACCCTT-GTC-AG-TCAAA
*
14774302 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
14774329 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 56, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 143 0.52
159 121 0.44
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (155 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCGCAAGCTCGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTTGTCAGTCAAA
Found at i:14774335 original size:894 final size:894
Alignment explanation
Indices: 14772682--14774375 Score: 2577
Period size: 894 Copynumber: 1.9 Consensus size: 894
14772672 TGTCGTAACC
* *
14772682 CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGT
1 CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCGT
* * ** *
14772747 ATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCAGTTGGCCGGAGAGGCCGATCGAAGA
66 ATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGCCGACCGGAGAGGCCGATCGAAGA
* * *
14772812 GGCAGAACGCTCAAGCCGGGGAATGACCCGATCCTCCCTACGTGCTACCGATCCTACTGCTGGTC
131 GGCAGAACGCTCAAGCCGGGGAATGACCCGATCCCCCCTACATGCTACCGATCCTACTGCTAGTC
* * * * * *
14772877 CTACTGCCGTAAACCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACGC
196 CTACTACCGTAAACCTCGGTTCGATCCCATCTTAGACTGGGAATGAACTCTATATGCTTAGACAC
* *
14772942 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAG
261 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * *
14773007 AGGCAGAATGCGCAAGCCGAGGACTGACCCGGTCCCCTCTGCGTGCTGTCGATCCTACTGCCACA
326 AGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCTCTGCATGCTATCGATCCTACTGCCACA
* * * *
14773072 ACCCTCAGTCTGATCTGATCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAAC
391 ACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAAC
* *
14773137 GAGCATGCGGGCGCTGAACAGACCGAAGAGGCATAATGCGCAAGCCAGAGATTAGCCTGGTCCCC
456 GAGCATACGGGCGCTGAACAGACCGAAGAGGCATAATGCGCAAGCCAGAGATCAGCCTGGTCCCC
* * ** **
14773202 CTCTGCATGCTGCCGATCCTGCTACCACAGCCCTCATTTTGGCTGGGGCTTAGACAAGGAATGAA
521 CTCTGCATGCTGCCGATCCCGCTACCACAACCCTCATTTCAGCTACGGCTTAGACAAGGAATGAA
* ** *
14773267 CTCCCTATGCCTAAGCCAACCCATCAAACGGGCGTACGGGTGCTCAGTTGGCCGGAGAGGCAGAA
586 CTCCCTATGCCTAAGCCAACCCATCAAACGGGCGTACAGGTGCTCAGCCGGCCGGAGACGCAGAA
* * * *
14773332 TGCGCAAGCCGGGGATCGACTCGATCCCCCGTGCGTGCTGTCAATCCTGCTATCGCAACCCTTGG
651 TGCACAAGCCGGAGATCGACTCGATCCCCCCTACGTGCTGTCAATCCTGCTATCGCAACCCTTGG
* * * *
14773397 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGGATGAAGTCCGTATGCC
716 TCTAGTCCAAACTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAGTCCGTATGCC
*
14773462 TAAGTCAACCCATTAAATGACTGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCG
781 TAAGTCAACCCATGAAATGACTGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCG
14773527 GTAATCGGCTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAACA
846 GTAATCGGCTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAACA
* *
14773576 CTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCGT
1 CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCGT
* * * * *
14773641 ATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCACTCAGCCGATCGGAGAGGCTGGTCGAAGA
66 ATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGCCGACCGGAGAGGCCGATCGAAGA
* * * ** * *
14773706 GGCAGAATGCTCAAGCCGGGGATTGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCTAGTT
131 GGCAGAACGCTCAAGCCGGGGAATGACCCGATCCCCCCTACATGCTACCGATCCTACTGCTAGTC
* * *
14773771 TTGCTACCGTAAACCTCGGTTCGATCCCATCTTAGACTGGGAATGAACTCTATATGCTTAGACAT
196 CTACTACCGTAAACCTCGGTTCGATCCCATCTTAGACTGGGAATGAACTCTATATGCTTAGACAC
*
14773836 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
261 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* * *
14773901 AGGCAGAATGTGCAAGCCGGGGACTGACCCGATCCCCTCTGCATGCTATCGATCCTGCTGCCACA
326 AGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCTCTGCATGCTATCGATCCTACTGCCACA
14773966 ACCCTCAGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAA
391 ACCCTCAGT-CAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAA
* * * * * * *
14774030 TGAGCGTACGGGCGCTGAACCA-ATCGGAGAGGCATAATGCGCAAGCTAGGGATCAGCTTGGTCC
455 CGAGCATACGGGCGCTGAA-CAGACCGAAGAGGCATAATGCGCAAGCCAGAGATCAGCCTGGTCC
* * *
14774094 CCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCATTTCAGCTACGGCTTAGACATGGAATG
519 CCCTCTGCATGCTGCCGATCCCGCTACCACAACCCTCATTTCAGCTACGGCTTAGACAAGGAATG
* *
14774159 AACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTCAGCCGGCCGGAGACGCAG
584 AACTCCCTATGCCTAAGCCAACCCATCAAACGGGCGTACAGGTGCTCAGCCGGCCGGAGACGCAG
* *
14774224 AATGCACAAGCTC-GAGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCTGCTA-CTGCAACCC
649 AATGCACAAGC-CGGAGATCGACTCGATCCCCCCTACGTGCTGTCAATCCTGCTATC-GCAACCC
* *
14774287 TTGGTCTAGTTCAAACTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAGTCCGTA
712 TTGGTCTAGTCCAAACTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAGTCCGTA
14774352 TGCCTAAGTCAACCCATGAAATGA
777 TGCCTAAGTCAACCCATGAAATGA
14774376 ACGCGTGGGC
Statistics
Matches: 713, Mismatches: 83, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
893 1 0.00
894 707 0.99
895 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (894 bp):
CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGCCGACCGGAGAGGCCGATCGAAGA
GGCAGAACGCTCAAGCCGGGGAATGACCCGATCCCCCCTACATGCTACCGATCCTACTGCTAGTC
CTACTACCGTAAACCTCGGTTCGATCCCATCTTAGACTGGGAATGAACTCTATATGCTTAGACAC
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
AGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCTCTGCATGCTATCGATCCTACTGCCACA
ACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAAC
GAGCATACGGGCGCTGAACAGACCGAAGAGGCATAATGCGCAAGCCAGAGATCAGCCTGGTCCCC
CTCTGCATGCTGCCGATCCCGCTACCACAACCCTCATTTCAGCTACGGCTTAGACAAGGAATGAA
CTCCCTATGCCTAAGCCAACCCATCAAACGGGCGTACAGGTGCTCAGCCGGCCGGAGACGCAGAA
TGCACAAGCCGGAGATCGACTCGATCCCCCCTACGTGCTGTCAATCCTGCTATCGCAACCCTTGG
TCTAGTCCAAACTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAGTCCGTATGCC
TAAGTCAACCCATGAAATGACTGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCG
GTAATCGGCTCGATCCCCCCTGCGTACTGTCAATACTGCCACCACAACA
Found at i:14774338 original size:26 final size:26
Alignment explanation
Indices: 14774302--14774354 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14774292 CTAGTTCAAA
*
14774302 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14774328 CTTAGACTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14774354 C
1 C
14774355 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14774537 original size:26 final size:26
Alignment explanation
Indices: 14774500--14774552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14774490 TCGGTCCGAT
* *
14774500 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14774526 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14774552 C
1 C
14774553 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14774817 original size:699 final size:694
Alignment explanation
Indices: 14773484--14775762 Score: 2413
Period size: 699 Copynumber: 3.3 Consensus size: 694
14773474 TTAAATGACT
* * * * *
14773484 GTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCG-GTAATCGGCTCGATCCCCCCT
1 GTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAG--ATCGGCTCGGTCCCCCCT
* * * * * * * * * *
14773548 GCGTACTGTCAATACTGCCACCACAACACTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCT
64 ACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCC
* * *
14773613 GTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCAC
129 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA-GGGCAC
* * * * * *
14773678 TCAGCCGATCGGAGAGGCTGGTC-GAAGAGGCAGAATGCTCAAGCCGGGGATTGACCCGATCCCC
193 TCAGCCGACCGGAGAGGCCGG-CAGAAGAGGCAAAATGCGCAAGCTGGGGATTGGCCCGATCCCC
* * * *
14773742 CCTGCATGCTGTCGATCCTGCTGCTAGTTTTGCTACCGTAAACCTCGGTTCGATCCCATCTTAGA
257 CCT--ATG-TG-C--TAC--C-G--A-TTATGCTACCGTAAACCTTGGTTCGATCCGATCTTAGA
* *
14773807 CTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
310 CTCGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * *
14773872 CGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGACTGACCCGATCCC
375 CGAGCGTGCGGGCGCTCAGCC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGACAGACCCGATCCC
* * * * *
14773937 CTCTGCATGCTATCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAA
439 CCCTGCGTGCTATCGAT-CTGCTACCACAACACTCGGTCCAGTCTGATCTTAGACTGGGAATGAA
* * * * *
14774002 CTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTACGGGCGCTGAACCAATCGGAGAGGCATAA
503 CTCCATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCCGATCGGAGAGGCATAA
* ** * * * *
14774067 TGCGCAAGCTAGGGATCAGCTTGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCA
568 TGCACAAGCCGGGGATCGGCTTGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCG
* * ** *
14774132 TTTCAGCTACGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGC
633 GTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
* * * *
14774194 GTGCAGGTGCTCAGCCGGCCGGAGACGCAGAATGCACAAGCTCGAGATCGACTCGGTCCCCCCTA
1 GTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGC-CGAGATCGGCTCGGTCCCCCCTA
* * * * * *
14774259 CGTGCTGTCGATCCTGCTACTGCAACCCTTGGTCTAGTTCAAACTTAGATTGGGAATGAACTCCG
65 CGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCG
* *
14774324 TATGCTTAGACTGGGGATGAAGTCCGTATGCCTAAGTCAACCCATGAAATGAACGCGT-GGGCAC
130 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG-A-GCGTAGGGCAC
* * * * * *
14774388 TTAGCCAACCGAAAATGCCGGCCAG-AGAGGCAAAATGCGCAAGCTGGGGATTGGCCCGCTTCCC
193 TCAGCCGACCGGAGAGGCCGG-CAGAAGAGGCAAAATGCGCAAGCTGGGGATTGGCCCG-ATCCC
* *
14774452 CCCTATGTGCTACCGATTATGCTACCGTAAACCTTGGTTCGGTCCGATCTTAGACTTGGAATGAA
256 CCCTATGTGCTACCGATTATGCTACCGTAAACCTTGGTTCGATCCGATCTTAGACTCGGAATGAA
14774517 CTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
321 CTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* * * *
14774582 GCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAG-CTCGGTCCCCCCTGTGTGC
386 GCGCTCAGCC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGA-CAGACCCGATCCCCCCTGCGTGC
* * * *
14774646 TATCGATACTGCTACCACAATACTCGGTCCAGCCCGATCTTAGACTGGGAATGAACTCCATATGT
449 TATCGAT-CTGCTACCACAACACTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGC
* * *
14774711 CTAAGTCAACCCACGAAATGAGCATTCGGGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCC
513 CTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCCGATCGGAGAGGCATAATGCACAAGCC
* * ** * *
14774776 GGGGATCGGCTTGATCCCACTCTGCATGCTGTTGGTCCCGCTGCCATAACCCTTGGTTCGGCTGG
578 GGGGATCGGCTTGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGG
* *
14774841 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAACGCGC
643 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
* * * * *
14774893 ATGCGGGCGCTCAGCCGGCCGGAAAGGCAGAATACGCAAGCCGAGGATCGGCTCGGTCCCCCCTG
1 GTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGA-GATCGGCTCGGTCCCCCCTA
* * * * *
14774958 TGTGCTGTCGATCCTACTGCCGCAAACCTCGGTCC-GATCCAATCTTAGACTGGGAATGAACTTC
65 CGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAG-TCCAATCTTAGACTGGGAATGAACTCC
* *
14775022 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCATACGGGCAC
129 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA-GGGCAC
* * * * * * * * ** *
14775087 TCAACCGGCCGGAGAGGCCAG-ATGAAGAGGCATAATACGTACG-TCAGGGATCAGCCCGGTCCC
193 TCAGCCGACCGGAGAGGCCGGCA-GAAGAGGCAAAATGCGCAAGCT-GGGGATTGGCCCGATCCC
** ** * *
14775150 CCTCTGCGTGCTGTCG---AT-C--CCG-----C-T-G-TCGATCCTGCTACTATA-ACCCTCAG
256 CC-CTATGTGCTACCGATTATGCTACCGTAAACCTTGGTTCGATCC-GAT-CT-TAGA--CTCGG
** ** * * * *
14775200 TCTG-A--CTG-GGGCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCTACGAAATGAGC
315 AATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* * * * * * *
14775261 ATGCAGGCACTCAGCCGATCGGAGA-GCTAGAATGCGCAAGCCGAGGACCGACCCGATTCCCCCT
380 GTGCGGGCGCTCAGCCG-CCGGAGAGGC-AGAATGCGCAAGCCGGGGACAGACCCGATCCCCCCT
* * * * * **
14775325 GCGTGTTGTCAATCTTGCTACCGCAACACTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCC
443 GCGTGCTATCGATC-TGCTACCACAACACTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
* * * *
14775390 ATATGCCTAAGTCAACCCATGTAACGAGCGTTCGGGCGCTGAGCCGATCGTAGAGGCATAATGCA
507 ATATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCCGATCGGAGAGGCATAATGCA
* * * ** * * *
14775455 CAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTACCGGTCCCGGTGCCACAACCCTCGGTCC
572 CAAGCCGGGGATCGGCTTGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTTC
*
14775520 GGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
637 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
* * * * * *
14775578 TTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGG-TCCGTTCCCCCTA
1 GTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCC-GAGATCGGCTCGGTCCCCCCTA
* * * * * *
14775642 CGTGCTG-CTGATCCTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCC
65 CGTGCTGTC-GATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCC
* * *
14775706 ATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAGCCATGAAACGAGCGT
129 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
14775763 GCAGACGCTC
Statistics
Matches: 1323, Mismatches: 219, Indels: 80
0.82 0.14 0.05
Matches are distributed among these distances:
683 1 0.00
684 120 0.09
685 357 0.27
686 7 0.01
687 4 0.00
688 4 0.00
689 5 0.00
693 3 0.00
695 1 0.00
696 2 0.00
697 4 0.00
698 13 0.01
699 574 0.43
700 3 0.00
702 1 0.00
703 1 0.00
705 2 0.00
707 1 0.00
708 2 0.00
709 3 0.00
710 199 0.15
711 12 0.01
712 4 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (694 bp):
GTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAGATCGGCTCGGTCCCCCCTAC
GTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAGGGCACTCA
GCCGACCGGAGAGGCCGGCAGAAGAGGCAAAATGCGCAAGCTGGGGATTGGCCCGATCCCCCCTA
TGTGCTACCGATTATGCTACCGTAAACCTTGGTTCGATCCGATCTTAGACTCGGAATGAACTCTG
TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCCGCCGGAGAGGCAGAATGCGCAAGCCGGGGACAGACCCGATCCCCCCTGCGTGCTATCGAT
CTGCTACCACAACACTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
ACCCACGAAATGAGCGTTCGGGCGCTGAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCG
GCTTGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGA
CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
Found at i:14774915 original size:159 final size:158
Alignment explanation
Indices: 14774525--14774957 Score: 463
Period size: 159 Copynumber: 2.7 Consensus size: 158
14774515 AACTCTGTAT
* *
14774525 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * **
14774590 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCTCGGTCCCCCCTGTGTGCTATCGATAC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCATGCTATCGATAC
* *
14774655 TGCTACCACAATACTCGGTCCAGCCCGA
131 CGCTACCACAACACTCGGTCCAGCCCGA
* * * * * * *
14774683 TCTTAGAC-TGGGAATGAACTCCATATGTCTAAGTCAACCCACGAAATGAGCATTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * * * *
14774747 GCCGACCGGAGAGGCATAATGCACAAGCCGGGGATCGGCTTGATCCCACTCTGCATGCTGTTGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCC-CCCTGCATGCTATCGAT
* * * * * * * ** *
14774812 CCCGCTGCCATAACCCTTGGTTCGGCTGGG
129 ACCGCTACCACAACACTCGGTCCAGCCCGA
* * *
14774842 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAACGCGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *
14774907 CCGGCCGGAAAGGCAGAATACGCAAGCCGAGGATCGGCTCGGTCCCCCCTG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTG
14774958 TGTGCTGTCG
Statistics
Matches: 218, Mismatches: 54, Indels: 6
0.78 0.19 0.02
Matches are distributed among these distances:
157 1 0.00
158 96 0.44
159 120 0.55
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCATGCTATCGATAC
CGCTACCACAACACTCGGTCCAGCCCGA
Found at i:14775037 original size:26 final size:26
Alignment explanation
Indices: 14775001--14775053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14774991 CCGATCCAAT
*
14775001 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14775027 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14775053 C
1 C
14775054 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14775474 original size:158 final size:156
Alignment explanation
Indices: 14775211--14775711 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 156
14775201 CTGACTGGGG
* * * * *
14775211 CTTAGACATGGAATGAACTCCATATGCCTAA-TCCAACCTACGAAATGAGCATGCAGGCACTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGT-CAACCCACGAAACGAGC-TTCGGGCGCTCAG
* * * * *
14775275 CCGATCGGAGA-GCTAGAATGCGCAAGCCGAGGACCGACCCGATTCCCCCTGCGTGTTGTCAATC
64 CCGATCGGAGAGGC-AAAATGCACAAGCCGAGGATCGACCCGATTCCCCCTGCGTGCTG-CGATC
* * * *
14775339 TTGCTACCGCAACACTCGATCTGGTCTGAT
127 CTGCTGCCGCAACCCTCGATCCGGTCTGAT
* * *
14775369 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGTAACGAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGC-TTCGGGCGCTCAG
* * * * * *
14775433 CCGATCGTAGAGGCATAATGCACAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTACCGGTC
64 CCGATCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCGATTCCCC-CTGCGTGCT-GCGATC
* * * * **
14775498 CCGGTGCCACAACCCTCGGTCCGG-CTGGGG
127 CTGCTGCCGCAACCCTCGATCCGGTCT-GAT
* * * *
14775528 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTT-CGGGCGCTCAGC
* * ** *
14775593 CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGTCCG-TTCCCCCTACGTGCTGCTGATCCT
65 CGATCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCGATTCCCCCTGCGTGCTGC-GATCCT
* *
14775657 GCTGCTGCAACCCTC-AGTCCGGTCCGAT
129 GCTGCCGCAACCCTCGA-TCCGGTCTGAT
14775685 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
14775712 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 54 0.20
158 100 0.36
159 117 0.43
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTTCGGGCGCTCAGCC
GATCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCGATTCCCCCTGCGTGCTGCGATCCTGC
TGCCGCAACCCTCGATCCGGTCTGAT
Found at i:14775726 original size:26 final size:26
Alignment explanation
Indices: 14775685--14775737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14775675 CCGGTCCGAT
14775685 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14775711 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14775737 C
1 C
14775738 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14776641 original size:26 final size:26
Alignment explanation
Indices: 14776603--14776655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14776593 CTGGTCTAAT
*
14776603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14776629 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14776655 C
1 C
14776656 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14782876 original size:26 final size:26
Alignment explanation
Indices: 14782831--14782881 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14782821 GATCTGATCC
*
14782831 TAGACTGGGAAAGAATTCCGTATGCT
1 TAGACTGGGAAAGAACTCCGTATGCT
* *
14782857 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAAAGAACTCCGTATGC
14782882 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAAAGAACTCCGTATGCT
Found at i:14783359 original size:159 final size:159
Alignment explanation
Indices: 14782854--14783600 Score: 605
Period size: 159 Copynumber: 4.7 Consensus size: 159
14782844 AATTCCGTAT
* * * * * *
14782854 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
14782918 GCCGGCCTG-AGAGGCATAATGCACAAGTC-AGGGATTGGCCCGGTCCCCCTCTACGTGCTGCCG
65 GTCGACC-GAAGAGGCAGAATGCACAAGCCGA-GGATCGACCCGGTCCCCCTCTACGTGCTACCG
* * *
14782981 GTCCCGCTGCCACAACCCTCACTCTGGCTGGG
128 ATCCCACTGCCACAACCCTCAGTCTGGCTGGG
** * * * * *
14783013 GCTTAGACATCAAATGAACTCCATATGCCTAAGCCAACCTACGAAATGAGTGCGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* ** * * **
14783078 TCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATC-AGCCTGGT-CCCC-CTACGTGCTATAGAT
66 TCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCGGTCCCCCTCTACGTGCTACCGAT
* * ** * *
14783140 CCTACTACCGTAACCCTCAGTCTGG-TCCGA
130 CCCACTGCCACAACCCTCAGTCTGGCT-GGG
* * * * ** *
14783170 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * **
14783234 G-CGGGCCGAAGAGGCATAATGCACAAACCGAGGATCGACCCGGTCCCCATCTACGTGCTGTCGA
65 GTC-GACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTACCGA
* * * *
14783298 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
129 TCCCACTGCCACAACCCTCAGTCTGGCTGGG
* * * * *
14783329 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACAAAATGAACGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *** * * * * *
14783394 TCGATCGGAGAGGCAGAATATGCAAGTCGGGGATCAACCCGGTCCCCCT-TGCGTGTTACCGATC
66 TCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTACCGATC
* *
14783458 CCACTGCCACAACCCTCATTATGGCTGGG
131 CCACTGCCACAACCCTCAGTCTGGCTGGG
* * * * *
14783487 GCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCACGAAACGGGCGTGTAGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTG-CGGGCGCTCA
** *** * * *
14783552 GTCGGTCGAAGAGGCAGAATATGCAAGCCGGGGATCGATCCGATCCCCC
65 GTCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCC
14783601 CTGCATGCTG
Statistics
Matches: 457, Mismatches: 117, Indels: 28
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 112 0.25
158 91 0.20
159 247 0.54
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTACCGATC
CCACTGCCACAACCCTCAGTCTGGCTGGG
Found at i:14783428 original size:316 final size:316
Alignment explanation
Indices: 14782855--14783539 Score: 829
Period size: 316 Copynumber: 2.2 Consensus size: 316
14782845 ATTCCGTATG
* * * *
14782855 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGC
** * * * *
14782920 CGGCCTGAGAGGCATAATGCACAAGTCAGGGATTGGCCCGGTCCCCCTCTACGTGCTGCCGGTCC
66 CGGCCTGAGAGGCATAATGCACAAACCAGGGATCGACCCGGTCCCCATCTACGTGCTGCCGATCC
* *
14782985 CGCTGCCACAACCCTCACTCTGGCTGGGGCTTAGACATCAAATGAACTCCATATGCCTAAGCCAA
131 CGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATCAAATGAACTCCATATGCCTAAGCCAA
* * ** * * * *
14783050 CCTACGAAATGAGTGCGCGGGTGCTCAGTCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCAG
196 CCCACAAAATGAACGCGCAGGTGCTCAGTCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCAA
*
14783115 CCTGGTCCCCCTACGTGCTATAGATCCTACTACCGTAACCCTCAGTCTGGTCCGAT
261 CCCGGTCCCCCTACGTGCTATAGATCCTACTACCGTAACCCTCAGTCTGGTCCGAT
* *
14783171 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCATTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGC
* *
14783236 GGGCC-GAAGAGGCATAATGCACAAACC-GAGGATCGACCCGGTCCCCATCTACGTGCTGTCGAT
66 CGGCCTG-AGAGGCATAATGCACAAACCAG-GGATCGACCCGGTCCCCATCTACGTGCTGCCGAT
** ** * *
14783299 CCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCC
129 CCCGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATCAAATGAACTCCATATGCCTAAGCC
* * * *
14783364 AACCCACAAAATGAACGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATATGCAAGTCGGGGATC
194 AACCCACAAAATGAACGCGCAGGTGCTCAGTCGATCGAAGAGGCAGAATACGCAAGCCGGGGATC
* * ** * * ** * * * **
14783429 AACCCGGTCCCCCTTGCGTGTTACCGATCCCACTGCCACAACCCTCATTATGG-CTGGGG
259 AACCCGGTCCCCC-TACGTGCTATAGATCCTACTACCGTAACCCTCAGTCTGGTC-CGAT
* * * *
14783488 CTTAGACAT-GGAATGAACTCCCTATGCGTAAGCCAACCCACGAAACGGGCGT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
14783540 GTAGGGCACT
Statistics
Matches: 311, Mismatches: 53, Indels: 9
0.83 0.14 0.02
Matches are distributed among these distances:
315 2 0.01
316 233 0.75
317 75 0.24
318 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (316 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGC
CGGCCTGAGAGGCATAATGCACAAACCAGGGATCGACCCGGTCCCCATCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATCAAATGAACTCCATATGCCTAAGCCAA
CCCACAAAATGAACGCGCAGGTGCTCAGTCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCAA
CCCGGTCCCCCTACGTGCTATAGATCCTACTACCGTAACCCTCAGTCTGGTCCGAT
Found at i:14783662 original size:317 final size:316
Alignment explanation
Indices: 14782854--14783673 Score: 735
Period size: 316 Copynumber: 2.6 Consensus size: 316
14782844 AATTCCGTAT
* * * * * * *
14782854 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * ** * * * * *
14782919 CCGGCCTG-AGAGGCATAATGCACAAGTC-AGGGATTGGCCCGGTCCCC-CTCTACGTGCTGCCG
66 CGGGCC-GAAGAGGCAGAATACACAAACCGA-GGATCGACCCGATCCCCAC-CTACATGCTGTCG
* * * * * **
14782981 GTCCCGCTGCCACAACCCTC-ACTCTGGCTGGGGCTTAGACATCAAATGAACTCCATATGCCTAA
128 ATCCCACTGCCACAACCCTCGA-TCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCTAA
* * ** * * *
14783045 GCCAACCTACGAAATGAGTGCGCGGGTGCTCAGTCGATCGAAGAGGCAGAATGCGTAAGCCGGGG
192 GCCAACCCACAAAATGAACGCGCAGGTGCTCAGTCGATCGAAGAGGCAGAATACGCAAGCCGGGG
* * * * ** *
14783110 ATCAGCCTGGTCCCCCTACGTGCTATAGATCCTACTACCGTAACCCTCAGTCTGGTCCGA
257 ATCAACCCGGTCCCCCTACGTGCTACAGATCCCACTACCACAACCCTCAGTATGGTCCGA
* * * * * *
14783170 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCATTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * *
14783235 CGGGCCGAAGAGGCATAATGCACAAACCGAGGATCGACCCGGTCCCCATCTACGTGCTGTCGATC
66 CGGGCCGAAGAGGCAGAATACACAAACCGAGGATCGACCCGATCCCCACCTACATGCTGTCGATC
* * * * *
14783300 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCCA
131 CCACTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
* * * *
14783365 ACCCACAAAATGAACGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATATGCAAGTCGGGGATCA
196 ACCCACAAAATGAACGCGCAGGTGCTCAGTCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCA
* * * * * * *
14783430 ACCCGGTCCCCCTTGCGTGTTACCGATCCCACTGCCACAACCCTCATTATGG-CTGGG
261 ACCCGGTCCCCC-TACGTGCTACAGATCCCACTACCACAACCCTCAGTATGGTC-CGA
* *
14783487 GCTTAGACAT-GGAATGAACTCCCTATGCGTAAGCCAACCCACGAAACGGGCGTGTA-GGGCACT
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGC--GTACGGGCACT
* ** * * * *
14783550 CAGTC-GGTCGAAGAGGCAGAATATGCAAGCCGGGGATCGATCCGATCCCC-CCTGCATGCTGTC
63 CAG-CGGGCCGAAGAGGCAGAATACACAAACCGAGGATCGACCCGATCCCCACCTACATGCTGTC
* * * * * *
14783613 GATCCTACTGTCATAACCCTCGATCCGATCT-GATCTTATAC-TGGGAATGAACTCCGTATGC
127 GATCCCACTGCCACAACCCTCGATCCGA-CTGGAGCTTAGACAT-GGAATGAACTCCATATGC
14783674 TTAGATTGGA
Statistics
Matches: 415, Mismatches: 77, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
315 1 0.00
316 233 0.56
317 130 0.31
318 47 0.11
319 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CGGGCCGAAGAGGCAGAATACACAAACCGAGGATCGACCCGATCCCCACCTACATGCTGTCGATC
CCACTGCCACAACCCTCGATCCGACTGGAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
ACCCACAAAATGAACGCGCAGGTGCTCAGTCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCA
ACCCGGTCCCCCTACGTGCTACAGATCCCACTACCACAACCCTCAGTATGGTCCGA
Found at i:14784064 original size:26 final size:26
Alignment explanation
Indices: 14784026--14784078 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14784016 CCAGTTCGAT
*
14784026 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14784052 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14784078 C
1 C
14784079 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14784411 original size:159 final size:158
Alignment explanation
Indices: 14784051--14784482 Score: 444
Period size: 159 Copynumber: 2.7 Consensus size: 158
14784041 AACTCTGTAT
* * * *
14784051 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTGAG
* * * * * * **
14784116 TC-GACTGGAGAGGCAGAATGTGCAAGCT-AGGGATCGACCCGATCCCCCCTGCGTGTTGTCGAT
66 CCGGTC-GGAGAGGCAGAATGTGCAAGCTGA-GGATCGGCCCGGTCCCCCCTACCTGTTACCGAT
* * ** *
14784179 CCTACTGGCGTAACACTCGGTTCGGTCCAA
129 CCCACTGCCACAACACTCGGTCCGGTCCAA
* * * *
14784209 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTGA
* * *
14784273 GCCGGTCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGGTCCTCCTCTACCTGTTACCGAT
65 GCCGGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCC-CCCCTACCTGTTACCGAT
* *
14784338 CCCACTGCCACAAC-CTTCGGTCCGG-CTAGG
129 CCCACTGCCACAACAC-TCGGTCCGGTCCA-A
* * * * *
14784368 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCGGGCACCCG-
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTGA
* * * *
14784432 GCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATTGGCTCGGTCCCCCCT
65 GCCGGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCT
14784483 GCGTGCTGTC
Statistics
Matches: 225, Mismatches: 41, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 97 0.43
159 124 0.55
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTGAG
CCGGTCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCTACCTGTTACCGATCC
CACTGCCACAACACTCGGTCCGGTCCAA
Found at i:14784556 original size:26 final size:26
Alignment explanation
Indices: 14784527--14784579 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14784517 CCGATCTGAT
14784527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14784553 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14784579 C
1 C
14784580 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14791491 original size:158 final size:158
Alignment explanation
Indices: 14791161--14791593 Score: 401
Period size: 158 Copynumber: 2.7 Consensus size: 158
14791151 AACTCCGTTT
* * * * *
14791161 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * * * * *
14791226 TCGGCCGAAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCT
66 CCGGCCGAAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
* * * * * *
14791291 TGCTACCATAACCCTTGGTCCAGTTTGA
131 CGCTACCACAACCCTCGATCCAGCTAGA
* * * * * *
14791319 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
* *
14791383 GCCGGCCGAAGAGGCATAATACGCAAGGT-GGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGA
65 GCCGGCCGAAGAGGCAGAATACGCAA-GTCGGGGATCGACCCGATCCCCC-CTGCATGCTGTCGA
* ** *
14791447 TCCCG-TGCCACAACCCTCGATCTGGCTAGG
128 TCCCGCTACCACAACCCTCGATCCAGCTAGA
* * * * ** *
14791477 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * * *
14791542 CCGGTCGGATAGGCAGAATACACAAG-CTGGGGATC-AGCCC-AGTCCCCCCTGC
66 CCGGCCGAAGAGGCAGAATACGCAAGTC-GGGGATCGA-CCCGA-TCCCCCCTGC
14791594 GAGCTACTGA
Statistics
Matches: 218, Mismatches: 49, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 192 0.88
159 19 0.09
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCGGCCGAAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
CGCTACCACAACCCTCGATCCAGCTAGA
Found at i:14792531 original size:26 final size:26
Alignment explanation
Indices: 14792502--14792554 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14792492 CCGATCCAAT
*
14792502 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATGGGGAATGAACTCCATATG
* *
14792528 CTTAGATGGGGGATGAACTTCATATG
1 CTTAGATGGGGAATGAACTCCATATG
14792554 C
1 C
14792555 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCATATG
Found at i:14793275 original size:59 final size:59
Alignment explanation
Indices: 14793198--14793315 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 59
14793188 ATGCCGAGCC
* * * *
14793198 CAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACA
1 CAGCATGTGAACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACA
14793257 CAGCATGTGAACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACA
1 CAGCATGTGAACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACA
14793316 TGGAATGAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (59 bp):
CAGCATGTGAACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACA
Found at i:14793320 original size:26 final size:26
Alignment explanation
Indices: 14793282--14793334 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14793272 GGCTCAAAAT
14793282 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14793308 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14793334 C
1 C
14793335 CTAAGCCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14793824 original size:26 final size:26
Alignment explanation
Indices: 14793783--14793835 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14793773 CCTATCTGAT
*
14793783 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACCGGGAATGAACCCCATATG
* * *
14793809 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACCCCATATG
14793835 C
1 C
14793836 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACCCCATATG
Found at i:14794199 original size:26 final size:25
Alignment explanation
Indices: 14794150--14794201 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14794140 CCGGTCCGAT
**
14794150 CTTAGACTGGGATGAACTTTGTATG
1 CTTAGACTGGGATGAACTCCGTATG
14794175 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
14794201 C
1 C
14794202 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:14794512 original size:379 final size:367
Alignment explanation
Indices: 14793751--14794630 Score: 1009
Period size: 379 Copynumber: 2.4 Consensus size: 367
14793741 GAGCTACCGA
* * * ** *
14793751 TCCTACTGTCGCAACCCTTGATCCTATCTGATCTTAGACTGGGAATGAACCCCATATGCTTAGAC
1 TCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * * *
14793816 CGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGTGCTCAGTTGGCCGG
66 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCGG
* * * *
14793881 AGAGGCATAATCAATAAGCCGAGGATCAAGCCGGCCCCTCTCTGCATGCTGTCGATCCCGTCGCC
131 AGAGGCATAAGCAATAAGCCAAGGATCAACCCGGCCCCTCTCTGCATGCTGTCGATCCCGTCACC
* * *
14793946 GGTCCTGCTACCATAACCCTCAATCCGGCTAGGGCTTAGACAGGGAATGAACTCCGTATGCCTAA
196 GGTCCTACTACCACAACCCTCAATCCGACTAGGGCTTAGACAGGGAATGAACTCCGTATGCCTAA
** ** * * * *
14794011 GCCAACCCACGAAACGAGCGTGCAGGTGCTCAGTCAGCTGGAAAGGTAGAATGCGCAAGCCAGGG
261 GCCAACCCACGAAACGAGCGTGCAGACGCTCAACCAGCCGGAAAGGCAAAATGCACAAGCCAGGG
* * * * *
14794076 ATCGACCCGCTCCCCTCTGCGTGCTGTCGATCCTGCTACTGG
326 ATCGACCCGCTCCCCCCTGCATGCTATCAATCCTGCTACTAG
* * * *
14794118 TCCTGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG-ATGAACTTTGTATGCTTAGAC
1 TCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * * *
14794182 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
66 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCGG
**
14794247 AGAGGTCGATCAAAAAGGCATAATGCGTAAGCCAAGGATCAACCCGGTCCCC-CTCTGTGTGCTG
131 AGAGG-C-AT----AA-GC--AA----TAAGCCAAGGATCAACCCGG-CCCCTCTCTGCATGCTG
* ** * * *
14794311 TCGATCCCG-CTACCGGTCCTACTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGA
182 TCGATCCCGTC-ACCGGTCCTACTACCACAACCCTCAATCCGACTAGGGCTTAGACAGGGAATGA
* * * * *
14794375 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTAGACGCTCAACC-GACCGGAGAGGCAA
246 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAACCAG-CCGGAAAGGCAA
* * *
14794439 AATGCACAAGCC-GTGGATCGGCCCGGTCCCCCCCTGCATGCTATCAATCCTG-TGCTAG
310 AATGCACAAGCCAG-GGATCGACCCGCT-CCCCCCTGCATGCTATCAATCCTGCTACTAG
* *
14794497 TCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * *
14794562 AT-GGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCG
66 -TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCG
14794626 GAGAG
130 GAGAG
14794631 ACAGAATGCA
Statistics
Matches: 426, Mismatches: 67, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
366 79 0.19
367 38 0.09
368 2 0.00
372 2 0.00
373 1 0.00
375 2 0.00
378 3 0.01
379 194 0.46
380 104 0.24
381 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (367 bp):
TCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCGG
AGAGGCATAAGCAATAAGCCAAGGATCAACCCGGCCCCTCTCTGCATGCTGTCGATCCCGTCACC
GGTCCTACTACCACAACCCTCAATCCGACTAGGGCTTAGACAGGGAATGAACTCCGTATGCCTAA
GCCAACCCACGAAACGAGCGTGCAGACGCTCAACCAGCCGGAAAGGCAAAATGCACAAGCCAGGG
ATCGACCCGCTCCCCCCTGCATGCTATCAATCCTGCTACTAG
Found at i:14794567 original size:26 final size:26
Alignment explanation
Indices: 14794529--14794581 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14794519 CCGATCCGAT
*
14794529 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14794555 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14794581 C
1 C
14794582 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14794982 original size:159 final size:158
Alignment explanation
Indices: 14794554--14795014 Score: 505
Period size: 159 Copynumber: 2.9 Consensus size: 158
14794544 AACTTCGTAT
* * * *
14794554 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * *
14794619 TCGGCCGGAGAGACAGAATGCACAAGCTGGGGATCGACCCGGTCTCCCCCTGCGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTC-CCCCCTGCGTGCTGTCGATC
* *
14794684 TTGCTGCCGTAACCCTCGATCTCATCTGA
130 CTGCTGCCGCAACCCTCGATCTCATCTGA
* * * * * *
14794713 TCTTAGAC-TAGGAATGAACTCTATATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * * * * *
14794777 GCCGATCGGAGAGGCATAATGCGCAAGTTGAGGATCAACCCGGTCCCCCTCTACGTGCTGCCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * *
14794842 CCCGCTGCCACAACCCTCGGTC-CGA-CTGGG
129 CCTGCTGCCGCAACCCTCGATCTC-ATCT-GA
* * *
14794872 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * *****
14794937 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGAACGGTATAGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
14795002 TGCTGCCGCAACC
131 TGCTGCCGCAACC
14795015 TTCAATCTGG
Statistics
Matches: 243, Mismatches: 54, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
158 33 0.14
159 209 0.86
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCTCATCTGA
Found at i:14795072 original size:26 final size:26
Alignment explanation
Indices: 14795034--14795083 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14795024 GTTCGATCAG
14795034 AGACTGGGAATGAACTATGTATGCTT
1 AGACTGGGAATGAACTATGTATGCTT
* *
14795060 AGACTGGGGATGAACTTTGTATGC
1 AGACTGGGAATGAACTATGTATGC
14795084 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (26 bp):
AGACTGGGAATGAACTATGTATGCTT
Found at i:14796166 original size:159 final size:157
Alignment explanation
Indices: 14795766--14796226 Score: 480
Period size: 156 Copynumber: 2.9 Consensus size: 157
14795756 AACTCCGTAT
14795766 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
14795831 CCGGTCGAAAAGGCAGAATTCGCAAGTCGAGGATCGACCCGGTCCCCCTGCATGCTGTCGATCCT
66 CCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTGCATGCTGCCGATCCT
** ** * ***
14795896 GCTGTCGTAACCCTCGGTCTGGTCTGA
131 GCTACCACAACCCTCGATCCAATCTGA
* * * * *
14795923 TCTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*** * * * *
14795987 CCAACCGAAGAGGCATAATGCGCGAG-CTGAGGGTC-AGCCCGATCCCCCTCTGCATGCTGCCGG
66 CCGGTCGAAGAGGCAGAATGCGCAAGTC-GAGGATCGA-CCCGAT-CCCC-CTGCATGCTGCCGA
*
14796050 TCCTGCTACCACAACCCTCGATCCAAT-TGGG
127 TCCTGCTACCACAACCCTCGATCCAATCT-GA
* * * * *
14796081 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
14796146 CCGGTTGGAGAGGCAGAATGCGCAAGTCAAGGCTCGGCCCGGTCCCCCTGCGTGTTGCAGATCCT
66 CCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTGCATGCTGCCGATCCT
* *
14796211 ACTACCGCAACCCTCG
131 GCTACCACAACCCTCG
14796227 GTTTGGTTTG
Statistics
Matches: 244, Mismatches: 52, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
155 2 0.01
156 82 0.34
157 40 0.16
158 43 0.18
159 76 0.31
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTGCATGCTGCCGATCCT
GCTACCACAACCCTCGATCCAATCTGA
Found at i:14796280 original size:26 final size:26
Alignment explanation
Indices: 14796241--14796294 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14796231 GGTTTGATCT
14796241 TAGACTGGGAATGAACTACATATGCA
1 TAGACTGGGAATGAACTACATATGCA
* * *
14796267 TAGACTGGGGATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTACATATGCA
14796293 TA
1 TA
14796295 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTACATATGCA
Found at i:14796611 original size:26 final size:26
Alignment explanation
Indices: 14796582--14796634 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14796572 CCGGACCAAT
14796582 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
14796608 CTTAGACATTGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14796634 C
1 C
14796635 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14797320 original size:26 final size:26
Alignment explanation
Indices: 14797281--14797333 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14797271 GGCTCAAAAT
14797281 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
14797307 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
14797333 C
1 C
14797334 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:14797541 original size:158 final size:157
Alignment explanation
Indices: 14797307--14797800 Score: 510
Period size: 158 Copynumber: 3.1 Consensus size: 157
14797297 ACTCCATATG
* *
14797307 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14797371 CCGACTGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCT
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATC-
* *
14797436 TGCTACCGCAACCCTCAGTCCGGTCTGAT
129 TGCTGCCGCAACCCTCAGTCCGGTCTGAC
* ** * *
14797465 CTTAGATTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14797530 CGGCCGTAGAGGCATAATGCGCAAATTGGAGATCGGCCCGATCCCCCTCTACATGCTGTCGGTGC
66 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGAT-C
* * * * **
14797595 CGCTGCCACAACCATCAGTCTGG-CTGGGG
129 TGCTGCCGCAACCCTCAGTCCGGTCT-GAC
* * * *
14797624 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATC-AAACGGGTGTGCGGGGGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGCTCA
* * * * *
14797687 ACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATAGGCCCAATCCCCCCTGCCTGCTGTCGATC
64 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGAT-
** * * *
14797752 CTATTGCTGTAACCCTCGGTCCGGTCTGAC
128 CTGCTGCCGCAACCCTCAGTCCGGTCTGAC
*
14797782 CTTAGACTGGGAATGAACT
1 CTTAGAATGGGAATGAACT
14797801 TCATATGCTT
Statistics
Matches: 267, Mismatches: 61, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 140 0.52
159 122 0.46
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCTG
CTGCCGCAACCCTCAGTCCGGTCTGAC
Found at i:14797661 original size:159 final size:158
Alignment explanation
Indices: 14797306--14797751 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 158
14797296 AACTCCATAT
* * *
14797306 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
14797371 CCGACTGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCACAAATCGGAGATCGGCCCGATCCCCCCTACATGCTGTCGATCT
* * *
14797436 TGCTACCGCAACCCTCAGTCCGGTCTGA
131 CGCTACCACAACCATCAGTCCGGTCTGA
* * ** *
14797464 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * *
14797528 GCCGGCCGTAGAGGCATAATGCGCAAATTGGAGATCGGCCCGATCCCCCTCTACATGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCACAAATCGGAGATCGGCCCGATCCCCC-CTACATGCTGTCGAT
* * *
14797593 GC-CGCTGCCACAACCATCAGTCTGG-CTGGG
129 -CTCGCTACCACAACCATCAGTCCGGTCT-GA
* * * * *
14797623 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATC-AAACGGGTGTGCGGGGGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCGTACGGGCGCTCA
* * * * * * * * *
14797687 ACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATAGGCCCAATCCCCCCTGCCTGCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCACAAATCGGAGATCGGCCCGATCCCCCCTACATGCTGTCGATC
14797752 CTATTGCTGT
Statistics
Matches: 233, Mismatches: 49, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 108 0.46
159 120 0.52
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAATCGGAGATCGGCCCGATCCCCCCTACATGCTGTCGATCT
CGCTACCACAACCATCAGTCCGGTCTGA
Found at i:14797818 original size:26 final size:26
Alignment explanation
Indices: 14797782--14797834 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14797772 CCGGTCTGAC
14797782 CTTAGACTGGGAATGAACTT-CATATG
1 CTTAGACTGGGAATGAA-TTCCATATG
*
14797808 CTTAGACTGGGGATGAATTCCATATG
1 CTTAGACTGGGAATGAATTCCATATG
14797834 C
1 C
14797835 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCATATG
Found at i:14797969 original size:343 final size:342
Alignment explanation
Indices: 14797465--14798210 Score: 982
Period size: 343 Copynumber: 2.2 Consensus size: 342
14797455 CCGGTCTGAT
* * * *
14797465 CTTAGATTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * *
14797530 CGGCCGTAGAGGCATAATGCGCAAATTGGAGATCGGCCCGATCCCCCTCTACATGCTGTCGGTGC
66 CGGCCGAAGAGGCATAATGCGCAAACTGGAGATCGGCCCGATCCCCCTCTACATGCTATCGGTCC
* * *
14797595 CGCTGCCACAACCATCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAA
** * * * * *
14797660 CCCATC-AAACGGGTGTGCGGGGGCTCAACCGATC-GGAGAGGCAGAATGCGCAAGTCGGGGATA
196 CCCA-CGAAACGGACGTGCGGGCGCTCAACCG-GCGGGAGAGACAAAATGCGCAAGCCGGGGATA
* * *
14797723 GGCCCAATCCCCCCTGCCTGCTGTCGATCCTATTGCTGTAACCCTCGGTCCGG-TCTGACCTTAG
259 GGCCCAATCCCCCCTACCTGCTATCGATCCTACTGC-GTAACCCTCGGTCCGGTTC-GACCTTAG
** *
14797787 ACTGGGAATGAACT-TCATATG
322 ACTGAAAATAAACTCT-ATATG
* * **
14797808 CTTAGACTGGGGATGAATTCCATATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * *
14797873 CGGCTGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCC-AGTCCCCCTCTGCGTGCTATCGGTC
66 CGGCCGAAGAGGCATAATGCGCAAACTGGAGATCGGCCCGA-TCCCCCTCTACATGCTATCGGTC
* *
14797937 CCGCTGCCACAACTCCT-GGTCCGACTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGCC
130 CCGCTGCCACAAC-CATCAGTCCGACTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGCC
* *
14798001 AACCCACGAAACGGACGTGCGGGCGCTCAATCGGCGGGAGAGACAAAATGCGCAAGCCGGGGATC
194 AACCCACGAAACGGACGTGCGGGCGCTCAACCGGCGGGAGAGACAAAATGCGCAAGCCGGGGATA
* ** * *
14798066 GGCTCGGTCCCCCCTACGTGCTATCGATCCTACTGCGTAACCCTCGGTCCGGTTCGATCTTAGAC
259 GGCCCAATCCCCCCTACCTGCTATCGATCCTACTGCGTAACCCTCGGTCCGGTTCGACCTTAGAC
*
14798131 TGAAAATAAACTCTGTATG
324 TGAAAATAAACTCTATATG
* *
14798150 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGCGGGCGCT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
14798211 CAACCGAACT
Statistics
Matches: 348, Mismatches: 49, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
342 96 0.28
343 250 0.72
344 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGGCCGAAGAGGCATAATGCGCAAACTGGAGATCGGCCCGATCCCCCTCTACATGCTATCGGTCC
CGCTGCCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAA
CCCACGAAACGGACGTGCGGGCGCTCAACCGGCGGGAGAGACAAAATGCGCAAGCCGGGGATAGG
CCCAATCCCCCCTACCTGCTATCGATCCTACTGCGTAACCCTCGGTCCGGTTCGACCTTAGACTG
AAAATAAACTCTATATG
Found at i:14798482 original size:26 final size:26
Alignment explanation
Indices: 14798446--14798498 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14798436 CTGGTTCGAT
14798446 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
14798472 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14798498 C
1 C
14798499 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14800958 original size:25 final size:26
Alignment explanation
Indices: 14800918--14800969 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
14800908 CCGACCTGAT
14800918 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
14800943 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14800969 C
1 C
14800970 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14801376 original size:26 final size:25
Alignment explanation
Indices: 14801335--14801386 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14801325 GGCTCAAACT
*
14801335 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
14801360 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
14801386 C
1 C
14801387 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:14802074 original size:26 final size:26
Alignment explanation
Indices: 14802035--14802086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14802025 TGGCTCAAAA
*
14802035 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACACCGTAT
14802061 TCTTAGACAT-GGAATGAACACCGTAT
1 TCTTAGAC-TGGGAATGAACACCGTAT
14802087 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACACCGTAT
Found at i:14802454 original size:157 final size:158
Alignment explanation
Indices: 14802062--14802482 Score: 416
Period size: 157 Copynumber: 2.7 Consensus size: 158
14802052 ACTCCGTATT
* * *
14802062 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
14802127 CGATCGGAGAGGCAGAATGTGCAAGTCAGGGATCAGCCCGATCCCCCCCTACGTGCTGTCAATCC
66 CGATTGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGA-CCCCCCCTACGTGCTGCCAATCC
* ** * ** *
14802192 TGCTAACGTAACACTCGGTCCGGTCTAAT
130 CGCTAACACAACACTCAGTCCGAACTAAG
* * * * ** *
14802221 CTTAGAC-TGCGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTAAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
14802285 CCGACTGAAGAGGCATAATACGCAAACCAGGGATCGGCCCGA-CCCCTCTACGTGTTGCCAGTCC
65 CCGATTGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGACCCCCCCTACGTGCTGCCAATCC
* * * **
14802349 CGCTACCACAACCCTCAGTTC-AACTGGGG
130 CGCTAACACAACACTCAGTCCGAACT-AAG
* * *
14802378 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * *
14802443 CAATTGGAGAGGTATAATGCGCAAGCCGGGGATCGACCCG
66 CGATTGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCG
14802483 GTCCCCCTTG
Statistics
Matches: 206, Mismatches: 53, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
156 2 0.01
157 116 0.56
158 4 0.02
159 84 0.41
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGATTGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGACCCCCCCTACGTGCTGCCAATCCC
GCTAACACAACACTCAGTCCGAACTAAG
Found at i:14802925 original size:159 final size:155
Alignment explanation
Indices: 14802572--14803066 Score: 423
Period size: 159 Copynumber: 3.1 Consensus size: 155
14802562 AACTCCGTAT
* * * *
14802572 GCTTAGACATGGAATAAACTCCGTCTGCCTAAGCCAACTCATAAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCG-TCAA
* * * * * * * *
14802637 CCGGCTGAAGAGGTAGAATGCGTAAG-TCGGGGATCGGCCCGACCCCCCTACGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGTAAGCT-GAGGATCGACCCGTCCCCCCTACGTGCTGCCGATCC
* * *
14802701 TATTGCGCAACCCTCGATCCGGTCCGA
129 TACTGCCCAACCCTCGATCCGGACCGA
* * *
14802728 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTCGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGTC-A
* * *
14802792 GCCGACCGGAGAGGCATAATGCGTAAGCTGAGGATCGACCCAGTCCCCCTCTACGTGCTGCC-AG
64 ACCGGCCGGAGAGGCAAAATGCGTAAGCTGAGGATCGACCC-GTCCCCC-CTACGTGCTGCCGA-
* * *
14802856 T-CTCACTGCCCCAACCCTCGGT-CTGACCAGG
126 TCCT-ACTG-CCCAACCCTCGATCCGGACC-GA
* * * *
14802887 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTATGAGTGC-TC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGA-GCG--TGCGGGCGTC
* * ** *
14802950 AACCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATC-AGCCCGGTCCCCCCTACGTGCTATCAA
63 AACCGGCCGGAGAGGCAAAATGCGTAAGCTGAGGATCGA-CCC-GTCCCCCCTACGTGCTGCCGA
* * * * *
14803014 TCCTGCTGCTACAAACCTCGATCCGGTCTGA
126 TCCTACTGC-CCAACCCTCGATCCGGACCGA
*
14803045 TCTTAGAC-TAGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
14803067 ATATTCTTAG
Statistics
Matches: 273, Mismatches: 47, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
155 3 0.01
156 83 0.30
157 12 0.04
158 64 0.23
159 103 0.38
160 3 0.01
161 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGTCAAC
CGGCCGGAGAGGCAAAATGCGTAAGCTGAGGATCGACCCGTCCCCCCTACGTGCTGCCGATCCTA
CTGCCCAACCCTCGATCCGGACCGA
Found at i:14802995 original size:510 final size:510
Alignment explanation
Indices: 14802034--14803170 Score: 1208
Period size: 510 Copynumber: 2.2 Consensus size: 510
14802024 GTGGCTCAAA
* * *
14802034 ATCTTAGACTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACACCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATCAACTCCGTATGCTTAGACATGGAATAAACACCGTATGCCTAAGCCAAC
* * * ** * *
14802099 CCATGAAACGAGCTTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGTGCAAGTCAGGGATCAGC
66 CCATAAAACGAGCGTGCAGGCACTCAACCGATCGAAGAGGCAGAATGCGCAAGTCAGGGATCAGC
* * * *
14802164 CCGATCCCCCCCTACGTGCTGTCAATCCTGCTAACGTAACACTCGGTCCGGTCTAATCTTAGACT
131 CCGA-CCCCCCCTACGTGCTGTCAATCCTGATAACGCAACACTCGATCCGGTCCAATCTTAGACT
* * * *
14802229 GCGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTAAGCCGACTGAA
195 GCGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGACCGAA
* * *
14802294 GAGGCATAATACGCAAACCAGGGATCGGCCCGACCCCTCTACGTGTTGCCAGTCCCGCTACCACA
260 GAGGCATAATACGCAAACCAGGGATCGACCCGACCCCTCTACGTGCTGCCAGTCCCACTACCACA
** *
14802359 ACCCTCAGTTCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
325 ACCCTCAGTTCAACCAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
* ** * * *
14802424 GAGCGTGCAGGCACTCAGCCAATTGGAGAGGTATAATGCGCAAGCCGGGGATCGACCCGGTCCCC
390 GAGCGTGCAGG-ACTCAACCAACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCC
* * *
14802489 CTTGCGTG-TGTCAATCCTCCAACTGGTCCTGCTGTCGCAACCCTCAATCCGATCTG
454 CCTACGTGCTATCAATCCTCCAACTGGTCCTGCTGTCGCAACCCTCAATCCGATCTG
* *
14802545 ATCTTAGACTGGGAATCAACTCCGTATGCTTAGACATGGAATAAACTCCGTCTGCCTAAGCCAAC
1 ATCTTAGACTGGGAATCAACTCCGTATGCTTAGACATGGAATAAACACCGTATGCCTAAGCCAAC
* * * * * * *
14802610 TCATAAAACGAGCGTGCAGGCGCTCAACCG-GCTGAAGAGGTAGAATGCGTAAGTCGGGGATCGG
66 CCATAAAACGAGCGTGCAGGCACTCAACCGATC-GAAGAGGCAGAATGCGCAAGTCAGGGATCAG
* ** * *
14802674 CCCGA-CCCCCCTACGTGCTGTCGATCCT-ATTGCGCAACCCTCGATCCGGTCCGATCTTAGACT
130 CCCGACCCCCCCTACGTGCTGTCAATCCTGATAACGCAACACTCGATCCGGTCCAATCTTAGACT
* * * *
14802737 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG-TCGAGCCGACCGG
195 GCGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-AAGCCGACCGA
* * * * * * *
14802801 AGAGGCATAATGCG-TAAGCTGAGGATCGACCCAGTCCCCCTCTACGTGCTGCCAGTCTCACTGC
259 AGAGGCATAATACGCAAACCAG-GGATCGACCC-G-ACCCCTCTACGTGCTGCCAGTCCCACTAC
* * *
14802865 CCCAACCCTC-GGTCTGACCAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
321 CACAACCCTCAGTTC-AACCAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
**
14802929 AAAAC-AGGCGTATG-AGTG-CTCAACCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATC-AGC
385 AAAACGA-GCG--TGCAG-GACTCAACCAACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGA-C
* * * *
14802990 CCGGTCCCCCCTACGTGCTATCAA---T-C--CT-G--CTGC--T-ACAAACCTCGATCCGGTCT
445 CCGGTCCCCCCTACGTGCTATCAATCCTCCAACTGGTCCTGCTGTCGCAACCCTCAATCCGATCT
14803043 G
510 G
* * * * * * ** *
14803044 ATCTTAGACTAGGAATGAACTCCATATTCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATCAACTCCGTATGCTTAGACAT-GGAATAAACACCGTATGCCTAAGCCAA
* * * * * * * *
14803108 CCCACAAAACGAGTGTGCGGGCGCTCAACCGA-CCAGAGAGGCAGGATGCGCAAGCCGGGGATC
65 CCCATAAAACGAGCGTGCAGGCACTCAACCGATCGA-AGAGGCAGAATGCGCAAGTCAGGGATC
14803171 GAACGGGTGG
Statistics
Matches: 526, Mismatches: 85, Indels: 42
0.81 0.13 0.06
Matches are distributed among these distances:
498 2 0.00
499 120 0.23
500 1 0.00
502 4 0.01
504 1 0.00
505 2 0.00
507 6 0.01
508 104 0.20
509 28 0.05
510 135 0.26
511 120 0.23
512 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (510 bp):
ATCTTAGACTGGGAATCAACTCCGTATGCTTAGACATGGAATAAACACCGTATGCCTAAGCCAAC
CCATAAAACGAGCGTGCAGGCACTCAACCGATCGAAGAGGCAGAATGCGCAAGTCAGGGATCAGC
CCGACCCCCCCTACGTGCTGTCAATCCTGATAACGCAACACTCGATCCGGTCCAATCTTAGACTG
CGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGACCGAAG
AGGCATAATACGCAAACCAGGGATCGACCCGACCCCTCTACGTGCTGCCAGTCCCACTACCACAA
CCCTCAGTTCAACCAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG
AGCGTGCAGGACTCAACCAACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCC
TACGTGCTATCAATCCTCCAACTGGTCCTGCTGTCGCAACCCTCAATCCGATCTG
Found at i:14804311 original size:158 final size:158
Alignment explanation
Indices: 14803793--14804611 Score: 570
Period size: 158 Copynumber: 5.2 Consensus size: 158
14803783 ACACCGTATG
* * *
14803793 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCGCTCAG
** * * * * * *
14803857 TCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCTCCTACGTGTTGTCGATCT
65 TCGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCTCCTACGTGCTGTCGATCC
*
14803922 TGCTACCGCAACCCTCGGTCC-AGTCCGAT
130 TGCTACCGCAACCCTCGGTCCGA-TCTGAT
* * * * * *
14803951 CTTACACTGGGAATGAACTCCGTATGCATAAGTCAAACCACGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCGCTCAGT
* * * * * * **
14804016 CAGTCGAAGGGGCATAAT-TCACAAGCCGGGGATCAGCCTGATCCC-CCTGCACGTGCTACCGGA
66 CGGTCGAAGAGGCAGAATGT-GCAAGCCGGGGATCGGCCCGATCCCTCCT--ACGTGCTGTC-GA
* * * * * **
14804079 -CCTACTGCCACAACCCTCAGTCCG-GCTGGGG
127 TCCTGCTACCGCAACCCTCGGTCCGATCT-GAT
* * *
14804110 CTTAGAC-ATGGAATGAACTCAC-TATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 CTTAGACTA-GGAATGAACTC-CGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCGCTCA
* *
14804173 GTCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCTCCTACGTGCTGTCTATC
64 GTCGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCTCCTACGTGCTGTCGATC
* *
14804238 CTGCTACCGGAACCCTTGGTCCGATCTGAT
129 CTGCTACCGCAACCCTCGGTCCGATCTGAT
* * * ** * *
14804268 CTTTGACTAGGAATGAACTCTGTATGCCTAAGTCAAACCACGAAATGAGCGTGCGAGCGCTGAG-
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCGCTCAGT
* * * * * * * * * *
14804332 CTGGTTGAAAAGGCATAATATGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTC-AGC
66 C-GGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCTC-CTACGTGCTGTCGA-T
* * * * * **
14804396 CCCGCTGCCACAACCCTCGGTCTG-GCTAGGG
128 CCTGCTACCGCAACCCTCGGTCCGATCT-GAT
* * * ** * ** *
14804427 CTTAGAC-ATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGCATGTTGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCGCTCAG
* ** * ** * * * * *
14804491 CCGACCGGAGAGGCAGAATCCGTAAGCCAGGGAAT-GGCCCGGTCCC-CCTTCCGTGCTATCGAT
65 TCGGTCGAAGAGGCAGAATGTGCAAGCC-GGGGATCGGCCCGATCCCTCC-TACGTGCTGTCGAT
* * * * *
14804554 CCTGCTGCCGTAACCCTTGGTCTGGTCTGAT
128 CCTGCTACCGCAACCCTCGGTCCGATCTGAT
*
14804585 CTTAGAC-CGAGAATGAACTCCGTATGC
1 CTTAGACTAG-GAATGAACTCCGTATGC
14804612 TTAGACTGGG
Statistics
Matches: 508, Mismatches: 127, Indels: 52
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.01
158 263 0.52
159 225 0.44
160 13 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCGCTCAGT
CGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCTCCTACGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGATCTGAT
Found at i:14804380 original size:317 final size:316
Alignment explanation
Indices: 14803792--14804611 Score: 986
Period size: 317 Copynumber: 2.6 Consensus size: 316
14803782 AACACCGTAT
* * *
14803792 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
14803857 TCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCTCCTACGTGTTGTCGATCT
65 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTACGTGCTGTCGATCC
* * * *
14803922 TGCTACCGCAACCCTCGGTCC-AGTCCGATCTTACACTGGGAATGAACTCCGTATGCATAAGTCA
130 TGCTACCGCAACCCTTGGTCCGA-TCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
* **
14803986 AACCACGAAACAAGCGTGCGGGCGCTGAGCCAGTCGAAGGGGCATAATTCACAAGCCGGGGATCA
194 AACCACGAAACAAGCGTGCGAGCGCTGAGCCAGTCGAAAAGGCATAATTCACAAGCCGGGGATCA
* * *
14804051 GCCTGATCCCCCTGC-ACGTGCTACCGGACCTACTGCCACAACCCTCAGTCCGGCTGGG
259 GCCTGATCCCCCT-CTACGTGCTACCAGACCCACTGCCACAACCCTCAGTCCGGCTAGG
*
14804109 GCTTAGACATGGAATGAACTCACTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
14804174 TCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCTCCTACGTGCTGTCTATCC
65 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTACGTGCTGTCGATCC
* * * *
14804239 TGCTACCGGAACCCTTGGTCCGATCTGATCTTTGACTAGGAATGAACTCTGTATGCCTAAGTCAA
130 TGCTACCGCAACCCTTGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
** ** * * * *
14804304 ACCACGAAATGAGCGTGCGAGCGCTGAGCTGGTTGAAAAGGCATAATAT-GCAAGTCGGGGATCG
195 ACCACGAAACAAGCGTGCGAGCGCTGAGCCAGTCGAAAAGGCATAAT-TCACAAGCCGGGGATCA
* * ** * * * *
14804368 GCCTGGTCCCCCTCTGCGTGCTGTCAGCCCCGCTGCCACAACCCTCGGTCTGGCTAGG
259 GCCTGATCCCCCTCTACGTGCTACCAGACCCACTGCCACAACCCTCAGTCCGGCTAGG
* * * ** *
14804426 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGGGCATGTTGGTGCTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14804491 CCGACCGGAGAGGCAGAATCCGTAAGCCAGGGAAT-GGCCCGGTCCC-CCTTCCGTGCTATCGAT
65 TCGACCGGAGAGGCAGAATGCGCAAGCC-GGGGATCGGCCCGGTCCCTCC-TACGTGCTGTCGAT
* * * * *
14804554 CCTGCTGCCGTAACCCTTGGTCTGGTCTGATCTTAGAC-CGAGAATGAACTCCGTATGC
128 CCTGCTACCGCAACCCTTGGTCCGATCTGATCTTAGACTAG-GAATGAACTCCGTATGC
14804612 TTAGACTGGG
Statistics
Matches: 428, Mismatches: 67, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
316 4 0.01
317 415 0.97
318 9 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTACGTGCTGTCGATCCT
GCTACCGCAACCCTTGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAAA
CCACGAAACAAGCGTGCGAGCGCTGAGCCAGTCGAAAAGGCATAATTCACAAGCCGGGGATCAGC
CTGATCCCCCTCTACGTGCTACCAGACCCACTGCCACAACCCTCAGTCCGGCTAGG
Found at i:14805002 original size:26 final size:26
Alignment explanation
Indices: 14804964--14805016 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14804954 CCGATCCGAT
*
14804964 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14804990 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14805016 C
1 C
14805017 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14805417 original size:158 final size:158
Alignment explanation
Indices: 14804990--14805455 Score: 472
Period size: 159 Copynumber: 2.9 Consensus size: 158
14804980 ACTTCGTATG
* * * * *
14804990 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCAACGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
14805055 CGATCGGAGAGGCAGAATGCGCAAGCTGAGGACCGGCCCGGTTCCCCCCTACGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCAGATCCCCCCTGTGTGCTGTCGATCC
* * ** *
14805120 TGCTACCGCAACCCTCACTCCGGTTCGAA
130 TGCTGCCGCAACCTTCGGTCCGGCTCGAA
* ** * * *
14805149 CTTAGAC-TAGGAATGAACTCCATATGCATAAGTTAACCCATGAAACGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * *
14805213 CCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAACCCGATCCCCCTCTGTATGCTG-CCAGT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCC-CTGTGTGCTGTCGA-T
* * **
14805277 CCCGCTGCCACAACCTTCGGTCCGGCT-GGG
128 CCTGCTGCCGCAACCTTCGGTCCGGCTCGAA
* * * * *
14805307 GTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
14805372 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATGGGCCTAG-TCCCCCCTGTGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-AGATCCCCCCTGTGTGCTGTCGATCC
*
14805436 TGCTGTCGCAACCTTCGGTC
130 TGCTGCCGCAACCTTCGGTC
14805456 TGGTCTGATC
Statistics
Matches: 243, Mismatches: 58, Indels: 14
0.77 0.18 0.04
Matches are distributed among these distances:
157 29 0.12
158 104 0.43
159 110 0.45
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCCCTGTGTGCTGTCGATCCT
GCTGCCGCAACCTTCGGTCCGGCTCGAA
Found at i:14805478 original size:158 final size:158
Alignment explanation
Indices: 14804993--14805491 Score: 461
Period size: 158 Copynumber: 3.1 Consensus size: 158
14804983 TCGTATGCTT
* * * *
14804993 AGACATGGAATGAACTCCGTATGCCTAAGCCAAGCAACGAAACGAGCATGCGGGTGCTCAGCCGA
1 AGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
* * * * * **
14805058 TCGGAGAGGCAGAATGCGCAAGCTGAGGACCGGCCCGGTTCCCCCCTACGTGCTGTCGATCCTGC
65 TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCAGATCCCCCCTGTGTGCTGTCGATCCTGC
* * ** * * **
14805123 TACCGCAACCCTCACTCCGGT-TCGAACTT
129 TGCCGCAACCTTCGGTCCGGTCTGGATCAG
* * ** * * * *
14805152 AGACTAGGAATGAACTCCATATGCATAAGTTAACCCATGAAACGAGCGTACGGGCGCTGAGCCGG
1 AGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
* * ** * * * *
14805217 TCGGAGAGGCATAATGCGCAAGTCGGGGATCAACCCGATCCCCCTCTGTATGCTG-CCAGTCCCG
65 TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCC-CTGTGTGCTGTCGA-TCCTG
* * *
14805281 CTGCCACAACCTTCGGTCCGG-CTGGGGTTAG
128 CTGCCGCAACCTTCGGTCCGGTCT-GGATCAG
* * * * * *
14805312 ACA-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGCCGAC
1 AGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAT
*
14805376 CGGAGAGGCAGAATGCGCAAGCCGGGGATGGGCCTAG-TCCCCCCTGTGTGCTGTCGATCCTGCT
66 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-AGATCCCCCCTGTGTGCTGTCGATCCTGCT
* *
14805440 GTCGCAACCTTCGGTCTGGTCT-GATCAG
130 GCCGCAACCTTCGGTCCGGTCTGGATCAG
14805468 AGACTGGGAATGAACTCCGTATGC
1 AGACT-GGAATGAACTCCGTATGC
14805492 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 6 0.02
157 32 0.12
158 116 0.44
159 107 0.41
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
AGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAT
CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGATCCCCCCTGTGTGCTGTCGATCCTGCTG
CCGCAACCTTCGGTCCGGTCTGGATCAG
Found at i:14805506 original size:26 final size:27
Alignment explanation
Indices: 14805468--14805522 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
14805458 GTCTGATCAG
14805468 AGACTGGGAATGAACTCCGTATG-CTT
1 AGACTGGGAATGAACTCCGTATGCCTT
*
14805494 AGACTGGGGATGAACTCCGTATGCCTT
1 AGACTGGGAATGAACTCCGTATGCCTT
14805521 AG
1 AG
14805523 TCAACCCACG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCGTATGCCTT
Found at i:14806402 original size:13 final size:13
Alignment explanation
Indices: 14806384--14806409 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14806374 TTAGTTAAAG
14806384 AAAAATCAAAATA
1 AAAAATCAAAATA
14806397 AAAAATCAAAATA
1 AAAAATCAAAATA
14806410 GAAAGGAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATCAAAATA
Found at i:14806544 original size:60 final size:58
Alignment explanation
Indices: 14806448--14806980 Score: 538
Period size: 60 Copynumber: 8.6 Consensus size: 58
14806438 GTGTAGGGAC
** *
14806448 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTCGATTTTCAAGGAA
1 AATTGATACTTTCAACTTTT-CCCAAAAATA-TTTTTTTGAAATTTTTATTTTTAAGGAA
* * *
14806508 AATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTTGAAA-ATTTATTTCTAAGGAA
1 AATTGATACTTTCAACTTTTCC-CAAAAA----TATTTTTTTGAAATTTTTATTTTTAAGGAA
14806570 AATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTATTATTTTTTTTAA
1 AATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTTG--AA---A-TTT-TTA---TTTTTAA
*
14806635 AGAA
55 GGAA
* *
14806639 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATCTTTAAGGAA
1 AATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTT-GAAATTTTTATTTTTAAGGAA
14806699 AATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGAAAATTTATTTTATTATTTTTTTTAA
1 AATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTG--AA---A-TTT-TTA---TTTTTAA
*
14806763 AGAA
55 GGAA
* *
14806767 AATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATCTTTAAGGAA
1 AATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTT-GAAATTTTTATTTTTAAGGAA
***
14806827 AATTGATACTTTCAACTTTTCCTCAAAACCCTTTTTTT-AAA-TTTTATTTTTAAGGAA
1 AATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGAAATTTTTATTTTTAAGGAA
*
14806884 AATTGATACTTTCAACTTTTCCTCAAAACCT-TTTTTTTGGAAA-TTTTATTTTTAAGGAA
1 AATTGATACTTTCAACTTTTCC-CAAAA-ATATTTTTTT-GAAATTTTTATTTTTAAGGAA
14806943 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 AATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTT
14806981 TTTGGAAATT
Statistics
Matches: 408, Mismatches: 26, Indels: 79
0.80 0.05 0.15
Matches are distributed among these distances:
57 49 0.12
58 15 0.04
59 59 0.14
60 110 0.27
61 4 0.01
62 33 0.08
63 23 0.06
64 10 0.02
65 5 0.01
66 3 0.01
67 3 0.01
68 47 0.12
69 45 0.11
70 2 0.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (58 bp):
AATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAATTTTTATTTTTAAGGAA
Found at i:14806770 original size:128 final size:127
Alignment explanation
Indices: 14806505--14806979 Score: 647
Period size: 128 Copynumber: 3.8 Consensus size: 127
14806495 GATTTTCAAG
* * *
14806505 GAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTTTGAAAATTTAT-TTCTAAGGA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAA---TATTTTTTTGGAAATTTTATCTT-TAAGGA
*
14806569 AAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTATTATTTTTTTTA
62 AAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGAAAATTTATTTTATTATTTTTTTTA
14806634 AA
126 AA
14806636 GAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGGAAATTTTGATCTTTAAGGAAA
1 GAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGGAAATTTT-ATCTTTAAGGAAA
14806700 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTATTATTTTTTTTAAA
64 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTATTATTTTTTTTAAA
14806764 GAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGGAAATTTTGATCTTTAAGGAAA
1 GAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGGAAATTTT-ATCTTTAAGGAAA
* *** * *
14806828 ATTGATACTTTCAACTTTTCCTCAAAACCCTTTTTT--TAA---A--TT-TTA---TTTTTAAG
64 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTATTATTTTTTTTAAA
* *
14806881 GAAAATTGATACTTTCAACTTTTCCTCAAAACCT-TTTTTTTGGAAATTTTATTTTTAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAA-ATATTTTTTTGGAAATTTTATCTTTAAGGAAAA
14806945 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
65 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
14806980 TTTTGGAAAT
Statistics
Matches: 323, Mismatches: 16, Indels: 25
0.89 0.04 0.07
Matches are distributed among these distances:
116 44 0.14
117 52 0.16
118 2 0.01
120 3 0.01
121 2 0.01
123 1 0.00
126 2 0.01
128 145 0.45
129 39 0.12
130 3 0.01
131 30 0.09
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (127 bp):
GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGGAAATTTTATCTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTATTATTTTTTTTAAA
Found at i:14806950 original size:59 final size:61
Alignment explanation
Indices: 14806756--14807000 Score: 337
Period size: 57 Copynumber: 4.1 Consensus size: 61
14806746 TTTATTATTT
*
14806756 TTTTTAAAGAAAATTGATACTTTCAACTTTTCC-CTAAAAA--TATTTTTTTGGAAATTTTGA
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAACCT-TTTTTTTGGAAATTTTGA
* *
14806816 TCTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAACCCTTTTTTT--AAATTTT-A
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGGAAATTTTGA
14806873 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAACCTTTTTTTTGGAAATTTT-A
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGGAAATTTTGA
* **
14806932 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAATTTTGA
1 TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ACCTTTTTTTTGGAAATTTTGA
14806995 TTTTTA
1 TTTTTA
14807001 TTTAAAGAAA
Statistics
Matches: 168, Mismatches: 8, Indels: 15
0.88 0.04 0.08
Matches are distributed among these distances:
57 48 0.29
58 7 0.04
59 46 0.27
60 38 0.23
61 4 0.02
62 18 0.11
63 7 0.04
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.48
Consensus pattern (61 bp):
TTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGGAAATTTTGA
Found at i:14806970 original size:116 final size:117
Alignment explanation
Indices: 14806756--14806970 Score: 355
Period size: 117 Copynumber: 1.8 Consensus size: 117
14806746 TTTATTATTT
14806756 TTTTTAAAGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATCTTT
1 TTTTTAAAGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATCTTT
*
14806821 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAACCCTTTTTTTAAATTTTA
66 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAACCCTTTTTTTAAATTTTA
* * *
14806873 TTTTTAAGGAAAATTGATACTTTCAACTTTT-CCTCAAAACCT-TTTTTTTGGAAATTTT-ATTT
1 TTTTTAAAGAAAATTGATACTTTCAACTTTTCCCT-AAAA-ATATTTTTTTGGAAATTTTGATCT
14806935 TTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAA
64 TTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAA
14806971 ATATTTTTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
116 41 0.45
117 50 0.54
118 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.45
Consensus pattern (117 bp):
TTTTTAAAGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATCTTT
AAGGAAAATTGATACTTTCAACTTTTCCCCAAAACCCTTTTTTTAAATTTTA
Found at i:14807026 original size:5 final size:5
Alignment explanation
Indices: 14807018--14807077 Score: 52
Period size: 6 Copynumber: 11.4 Consensus size: 5
14807008 AAAATAGAAT
*
14807018 AATAA AATAA AA-AA AATGAA AGTGAA AAT-A AATAAA AATAAA AATAA
1 AATAA AATAA AATAA AAT-AA AAT-AA AATAA AAT-AA AAT-AA AATAA
14807065 AATAA AGATAA AA
1 AATAA A-ATAA AA
14807078 AGAATGTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
4 8 0.17
5 16 0.33
6 24 0.50
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:14807032 original size:21 final size:20
Alignment explanation
Indices: 14807003--14807070 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 20
14806993 GATTTTTATT
14807003 TAAAGAAAATAGAATAATAAAA
1 TAAA-AAAATAGAA-AATAAAA
*
14807025 TAAAAAAA-ATGAAAGTGAAAA
1 TAAAAAAATA-GAAAAT-AAAA
14807046 TAAATAAAAATA-AAAATAAAA
1 T-AA-AAAAATAGAAAATAAAA
14807067 TAAA
1 TAAA
14807071 GATAAAAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
19 1 0.03
20 5 0.13
21 17 0.44
22 10 0.26
23 5 0.13
24 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (20 bp):
TAAAAAAATAGAAAATAAAA
Found at i:14807050 original size:16 final size:16
Alignment explanation
Indices: 14807021--14807078 Score: 64
Period size: 17 Copynumber: 3.6 Consensus size: 16
14807011 ATAGAATAAT
*
14807021 AAAATAAAAA-AAATG
1 AAAATAAAAATAAATA
* *
14807036 AAAGTGAAAATAAATA
1 AAAATAAAAATAAATA
14807052 AAAATAAAAATAAAATA
1 AAAATAAAAAT-AAATA
*
14807069 AAGATAAAAA
1 AAAATAAAAA
14807079 GAATGTTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 8 0.23
16 13 0.37
17 14 0.40
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.16
Consensus pattern (16 bp):
AAAATAAAAATAAATA
Found at i:14807130 original size:26 final size:26
Alignment explanation
Indices: 14807101--14807150 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14807091 AACCTAATCT
*
14807101 AATAAATAAATAAAAT-AAAAAAAACA
1 AATAAACAAAT-AAATGAAAAAAAACA
14807127 AATAAACAAATAAATGAAAAAAAA
1 AATAAACAAATAAATGAAAAAAAA
14807151 AAAACCTGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (26 bp):
AATAAACAAATAAATGAAAAAAAACA
Found at i:14807949 original size:21 final size:22
Alignment explanation
Indices: 14807925--14807969 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
14807915 AAAACTAGAT
14807925 AATTA-GAAAAGATAAATAAAA
1 AATTATGAAAAGATAAATAAAA
* * *
14807946 AATTATTATAGGATAAATAAAA
1 AATTATGAAAAGATAAATAAAA
14807968 AA
1 AA
14807970 AATAATATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (22 bp):
AATTATGAAAAGATAAATAAAA
Found at i:14807983 original size:23 final size:22
Alignment explanation
Indices: 14807934--14807988 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
14807924 TAATTAGAAA
* *
14807934 AGATAAAT-AAAAAATTATTAT
1 AGATAAATAAAAAAAATAATAT
14807955 AGGATAAATAAAAAAAATAATAT
1 A-GATAAATAAAAAAAATAATAT
*
14807978 CAGATATATAA
1 -AGATAAATAA
14807989 TTAGATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 1 0.04
22 7 0.25
23 19 0.68
24 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (22 bp):
AGATAAATAAAAAAAATAATAT
Found at i:14808043 original size:23 final size:23
Alignment explanation
Indices: 14807995--14808042 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
14807985 ATAATTAGAT
14807995 AAATAAAAATACAAAAATAAATA
1 AAATAAAAATACAAAAATAAATA
14808018 AAATAAAAGATA-AAAAAT-AATA
1 AAATAAAA-ATACAAAAATAAATA
14808040 AAA
1 AAA
14808043 AATATATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 7 0.29
23 14 0.58
24 3 0.12
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (23 bp):
AAATAAAAATACAAAAATAAATA
Found at i:14808104 original size:34 final size:33
Alignment explanation
Indices: 14808031--14808115 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 33
14808021 TAAAAGATAA
*
14808031 AAAATAATAAAAAATATATATTACTAATAATAC
1 AAAATAATAAAAAATAGATATTACTAATAATAC
*
14808064 ATAAATAATAAAAACATAGGATA-TACATAA-AATAT
1 A-AAATAATAAAAA-ATA-GATATTAC-TAATAATAC
*
14808099 AAAATAAAATAAAAATA
1 AAAATAATA-AAAAATA
14808116 AAAATAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
33 1 0.02
34 22 0.50
35 15 0.34
36 6 0.14
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (33 bp):
AAAATAATAAAAAATAGATATTACTAATAATAC
Found at i:14808107 original size:12 final size:12
Alignment explanation
Indices: 14808090--14808124 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
14808080 TAGGATATAC
14808090 ATAAAATATAAA
1 ATAAAATATAAA
14808102 ATAAAATA-AAA
1 ATAAAATATAAA
14808113 ATAAAA-ATAAA
1 ATAAAATATAAA
14808124 A
1 A
14808125 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:14808115 original size:6 final size:6
Alignment explanation
Indices: 14808092--14808126 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
14808082 GGATATACAT
14808092 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
14808127 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:14808978 original size:158 final size:158
Alignment explanation
Indices: 14808456--14809275 Score: 681
Period size: 159 Copynumber: 5.2 Consensus size: 158
14808446 ACACCGTATG
* * * *
14808456 CTTAGAC-ATGGAATGAACTCCGCAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14808520 TCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCC-AGTCCCCCCTACGTGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGA-TCCCCCTTACGTGCTGTCGATC
* *
14808584 CTGCTGCTGCAACCCTCGATCCAGTCTGAT
129 CTGCTGCTGCAACCCTCGGTCCGGTCTGAT
* * * * * * *
14808614 CTTACACTGGGAATGAACTCCGTATGCATAAGTCATCCCACGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * *
14808679 CGGTCGAAGGGGCATAATTCGTAAGTCGGGGATTAGCCCGATCCCCCTGTACGTGCTGCCGGTCC
66 CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCT-TACGTGCTGTCGATCC
* ** * * * **
14808744 TACTGCCACAACCCTCAGT-CTGACTGGGG
130 TGCTGCTGCAACCCTCGGTCCGGTCT-GAT
* * *
14808773 CTTAGAC-ATGGAATGAACTCAC-TATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
1 CTTAGACTA-GGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
14808836 GTCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATC
64 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATC
* * * *
14808901 CTGCTACTGTAACCCTTGGTCCGGTCTAAT
129 CTGCTGCTGCAACCCTCGGTCCGGTCTGAT
* * * * * *
14808931 CTTTGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * **
14808996 TGGCTGGAGAGGCATAATACGCAAACCGGGGATCAACCCGGT-CCCCTTCCACGTGCTGTCGGCC
66 CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTT--ACGTGCTGTCGATC
* ** * **
14809060 CCGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 CTGCTGCTGCAACCCTCGGTCCGGTCT-GAT
* * * * *
14809090 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCCACGAAACGGGCATGCTGGTGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
14809154 GCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGAAT-GGCCCGGTCCCCCTTTCGTGCTATCGAT
64 GCCGGCCGGAGAGGCAGAATGCGTAAGCC-GGGGATCGGCCCGATCCCCCTTACGTGCTGTCGAT
* *
14809218 CCTGCTG-TCGCAACCCTTGGTCCGATCTGAT
128 CCTGCTGCT-GCAACCCTCGGTCCGGTCTGAT
14809249 CTTAGACT-GAGAATGAACTCCGTATGC
1 CTTAGACTAG-GAATGAACTCCGTATGC
14809276 TTAGACTGGG
Statistics
Matches: 507, Mismatches: 135, Indels: 39
0.74 0.20 0.06
Matches are distributed among these distances:
157 7 0.01
158 199 0.39
159 238 0.47
160 52 0.10
161 11 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCT
GCTGCTGCAACCCTCGGTCCGGTCTGAT
Found at i:14809052 original size:317 final size:314
Alignment explanation
Indices: 14808455--14809275 Score: 975
Period size: 317 Copynumber: 2.6 Consensus size: 314
14808445 AACACCGTAT
* * *
14808455 GCTTAGACATGGAATGAACTCCGCAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
14808520 TCGACCGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCC-AGTCCCCCCTACGTGCTGTCGATC
65 TCGACCGGAGAGGCAGAATGCGTAAGCAGGGGATCGGCCCGA-TCCCCCTTACGTGCTGTCGATC
* * * *
14808584 CTGCTGCTGCAACCCTCGATCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCATAAGTCA
129 CTGCT-CTGCAACCCTTGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCATAAGTCA
* * * * * * ** *
14808649 TCCCACGAAACAAGCGTGCGGGCGCTGAGCCGGTCGAAGGGGCATAATTCGTAAGTCGGGGATTA
192 ACCCACGAAACAAGCGTACGGGCGCTGAACCGGTCGAAGAGGCATAATACGCAAACCGGGGATCA
* ** * *
14808714 GCCCGATCCCCCTGTACGTGCTGCCGGTCCTACTGCCACAACCCTCAGTCTGACTGGG
257 ACCCGATCCCCCTCCACGTGCTGCCGGCCCCACTGCCACAACCCTCAGTCTGACTGGG
* *
14808772 GCTTAGACATGGAATGAACTCACTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** *
14808837 TCGGTCGGAGAGGCAGAATGCGTAAGTC-GGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATC
65 TCGACCGGAGAGGCAGAATGCGTAAG-CAGGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATC
* * * *
14808901 CTGCTACTGTAACCCTTGGTCCGGTCTAATCTTTGACTAGGAATGAACTCCGTATGCCTAAGTCA
129 CTGCT-CTGCAACCCTTGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCATAAGTCA
* * * *
14808966 ACCCACGAAACGAGCGTACGGGTGCTGAACTGG-CTGGAGAGGCATAATACGCAAACCGGGGATC
192 ACCCACGAAACAAGCGTACGGGCGCTGAACCGGTC-GAAGAGGCATAATACGCAAACCGGGGATC
* * * * * *
14809030 AACCCGGTCCCCTTCCACGTGCTGTCGGCCCCGCTGCCACAACCCTCGGTCTGGCTGGG
256 AACCCGATCCCCCTCCACGTGCTGCCGGCCCCACTGCCACAACCCTCAGTCTGACTGGG
* * * **
14809089 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACGAAACGGGCATGCTGGTGCTCA
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
14809154 GCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGAAT-GGCCCGGTCCCCCTTTCGTGCTATCGAT
64 GTCGACCGGAGAGGCAGAATGCGTAAG-CAGGGGATCGGCCCGATCCCCCTTACGTGCTGTCGAT
* *
14809218 CCTGCTGTCGCAACCCTTGGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGC
128 CCTGCTCT-GCAACCCTTGGTCCGGTCTGATCTTAGACTG-GAATGAACTCCGTATGC
14809276 TTAGACTGGG
Statistics
Matches: 429, Mismatches: 66, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
316 1 0.00
317 299 0.70
318 124 0.29
319 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGACCGGAGAGGCAGAATGCGTAAGCAGGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCT
GCTCTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCATAAGTCAACCC
ACGAAACAAGCGTACGGGCGCTGAACCGGTCGAAGAGGCATAATACGCAAACCGGGGATCAACCC
GATCCCCCTCCACGTGCTGCCGGCCCCACTGCCACAACCCTCAGTCTGACTGGG
Found at i:14809278 original size:26 final size:26
Alignment explanation
Indices: 14809249--14809301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14809239 CCGATCTGAT
14809249 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
14809275 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14809301 C
1 C
14809302 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14810171 original size:26 final size:26
Alignment explanation
Indices: 14810133--14810182 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14810123 GTCTTATCAG
14810133 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
14810159 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14810183 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:14811253 original size:26 final size:26
Alignment explanation
Indices: 14811215--14811267 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14811205 CTGGTCTGAT
14811215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14811241 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14811267 C
1 C
14811268 CTAAGCCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14811733 original size:26 final size:26
Alignment explanation
Indices: 14811704--14811756 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14811694 TCGGTCCGAT
14811704 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
* *
14811730 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
14811756 C
1 C
14811757 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:14821862 original size:26 final size:26
Alignment explanation
Indices: 14821821--14821873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14821811 CCCGTCCGAT
*
14821821 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14821847 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14821873 C
1 C
14821874 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14822789 original size:26 final size:26
Alignment explanation
Indices: 14822753--14822805 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14822743 CCAGTTCAAT
*
14822753 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
14822779 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
14822805 C
1 C
14822806 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14823664 original size:26 final size:26
Alignment explanation
Indices: 14823635--14823686 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14823625 TGGTCTGATA
14823635 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
* *
14823661 TTAGACTGGGGATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
14823687 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:14824214 original size:26 final size:26
Alignment explanation
Indices: 14824176--14824228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14824166 GGCTCAAACT
14824176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14824202 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14824228 C
1 C
14824229 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14824556 original size:26 final size:27
Alignment explanation
Indices: 14824520--14824573 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
14824510 CGGTTTCAAT
14824520 CTTAGACT-GGGAGTGAAC-TCCGTATG
1 CTTAGACTGGGGA-TGAACTTCCGTATG
14824546 CTTAGACTGGGGATGAACTTCCGTATG
1 CTTAGACTGGGGATGAACTTCCGTATG
14824573 C
1 C
14824574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGGATGAACTTCCGTATG
Found at i:14825285 original size:27 final size:27
Alignment explanation
Indices: 14825235--14825289 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
14825225 TTGATCTGAT
14825235 CTTAGACTGGGAATTGAACTCCATATG
1 CTTAGACTGGGAATTGAACTCCATATG
* *
14825262 CTTAGATTGGGGA-TGAACTCCCATATG
1 CTTAGACTGGGAATTGAACT-CCATATG
14825289 C
1 C
14825290 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATTGAACTCCATATG
Found at i:14827213 original size:26 final size:26
Alignment explanation
Indices: 14827163--14827215 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14827153 GTTGGCTTAG
*
14827163 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
14827189 GCATATAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
14827215 G
1 G
14827216 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:14827560 original size:158 final size:159
Alignment explanation
Indices: 14827321--14827704 Score: 456
Period size: 158 Copynumber: 2.4 Consensus size: 159
14827311 TCTCTGATCG
* * *
14827321 GCTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
1 GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCATATCTAA
* * * * *
14827385 GCCTCAGCCGGACCGAGGGTTGTGGCAGTGGGA-CTGGCAGCACGCAGAGGGGGACCGGG-CGAT
66 GCATCAGCCAGACCGAGGGTTGTGGCAGTAGGATC-GACAGCACACAG-GGGGGACCGGGCCGAT
*
14827448 CCCCGGCTTGTGCATTATGGCTCTCCGGCCA
129 CCCCGGCTTGCGCATTATGGCTCTCCGGCCA
* * * *
14827479 GCTTAGCGCCTGCACGCTCATTTTGTGGCTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAA
1 GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCATATCTAA
* * * *
14827543 G-ATCAGACCAGATCGAGGGTTGTGGTAGTAGGATCGACAGCACATAGGGGGGATCGGGCCGATC
66 GCATCAG-CCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACACAGGGGGGACCGGGCCGATC
* * * * *
14827607 CTCGGCTTGCGCATTTTGTCTCTCCGGTCG
130 CCCGGCTTGCGCATTATGGCTCTCCGGCCA
* * * * *
14827637 GCTGAGTGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATT-CCATGTCTAA
1 GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCATATCTAA
14827701 GCAT
66 GCAT
14827705 ATAGAGTTCA
Statistics
Matches: 189, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 17 0.09
158 166 0.88
159 6 0.03
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GCTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCATATCTAA
GCATCAGCCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACACAGGGGGGACCGGGCCGATCC
CCGGCTTGCGCATTATGGCTCTCCGGCCA
Found at i:14828035 original size:171 final size:170
Alignment explanation
Indices: 14827701--14828069 Score: 431
Period size: 171 Copynumber: 2.2 Consensus size: 170
14827691 CCATGTCTAA
* * * ** *
14827701 GCATATAGAGTTCATTCCCAATCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCAGC
1 GCATACAGAGTTCATCCCCAGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCAGC
* * * *
14827765 AACAGGATTGACAGCACGCAGGGGGAACCGGGCCGATCCCCGACTTGCGTAATCTACCTCTCTGA
65 AACAGGATCGACAGCACGCAGGGGGAACCAGGCCGATCCCCGACTTGCGCAATATACCTCTCTGA
* * * *
14827830 TCGGTTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAG
130 TCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
* * * **
14827871 GCATACGGAGTTCAT-TCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGACGGGC
1 GCATACAGAGTTCATCCCCA-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGC
* * * * *
14827935 AGCAGGATCGACAGCATGCAGAGAGGG-ACCAGGCTGATCCCCGACTTGCGCATTATGCCTCT-T
65 AACAGGATCGACAGCACGCAG-G-GGGAACCAGGCCGATCCCCGACTTGCGCAATATACCTCTCT
* *
14827998 CGGTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAG
128 -GATCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
14828042 GCATACAGAGTTCATCCCCAGTCTAAGC
1 GCATACAGAGTTCATCCCCAGTCTAAGC
14828070 ATACAGAGTT
Statistics
Matches: 166, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
169 3 0.02
170 65 0.39
171 92 0.55
172 6 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (170 bp):
GCATACAGAGTTCATCCCCAGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCA
ACAGGATCGACAGCACGCAGGGGGAACCAGGCCGATCCCCGACTTGCGCAATATACCTCTCTGAT
CGGCTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAG
Found at i:14828078 original size:26 final size:26
Alignment explanation
Indices: 14828042--14828094 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14828032 GTTGACTTAG
*
14828042 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
*
14828068 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
14828094 G
1 G
14828095 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:14828082 original size:367 final size:355
Alignment explanation
Indices: 14827603--14828279 Score: 858
Period size: 355 Copynumber: 1.9 Consensus size: 355
14827593 GGATCGGGCC
* * * * * **
14827603 GATCCTCGGCTTGCGCATTTTGTCTCTCCGGTCGGCTGAGTGCCCGCACGTTCATTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTT
* * * *
14827668 GGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATC-A
66 GACTTAGGCATACAAAGTTCATCCCATGTCTAAGCATACAGAGTTCATTACCAATCTAAGATCGA
*
14827732 GACCGGACCGAGGGTTGTGGCAGCAGGACCAGCAACAGGATTGACAGCACGCAGGGGGAACCGGG
131 -ACCAGACCGAGGG-T-T-GCAGCA-G--CAGCAAC---A--G-CAGCACGCAGGGGGAACCGGG
* ** * * * *
14827797 CCGATCCCCGACTTGCGTAATCTACCTCT-CTGATCGGTTGAGCGCCCGCACGCTCATTTTATGG
183 CCAATCCCCGACTTGCACAATCTACCTCTCCAG-CCAGTTGAGCGCCCGCACGCCCATTTTATGG
*
14827861 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAG
247 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGA-ACCGAGGGTTGTGGCAG
14827925 TAGGACGGGCAGCAGGATCGACAGCATGCAGAGAGGGACCAGGCT
311 TAGGACGGGCAGCAGGATCGACAGCATGCAGAGAGGGACCAGGCT
*
14827970 GATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTT
* *
14828035 GACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTACCAGTCTAAGATCG
66 GACTTAGGCATACAAAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTACCAATCTAAGATCG
* * * * *
14828099 AACCAGATCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGGGGGGACCGGGCCAATCCCCGGC
130 AACCAGACCGAGGGTTGCAGCAGCAGCAACAGCAGCACGCAGGGGGAACCGGGCCAATCCCCGAC
* * * * * * *
14828164 TTGCACATTCTGCCTCTCCAGCCAGTTGAGTGCCCGGATGCCCGTTTTGTGGGTTGGCTTAGGCA
195 TTGCACAATCTACCTCTCCAGCCAGTTGAGCGCCCGCACGCCCATTTTATGGGTTGGCTTAGGCA
*
14828229 TAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAG
260 TACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAG
14828280 CGAGACCGAC
Statistics
Matches: 270, Mismatches: 36, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
355 126 0.47
356 4 0.01
358 1 0.00
361 5 0.02
363 1 0.00
364 6 0.02
365 1 0.00
366 1 0.00
367 121 0.45
368 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
GATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTT
GACTTAGGCATACAAAGTTCATCCCATGTCTAAGCATACAGAGTTCATTACCAATCTAAGATCGA
ACCAGACCGAGGGTTGCAGCAGCAGCAACAGCAGCACGCAGGGGGAACCGGGCCAATCCCCGACT
TGCACAATCTACCTCTCCAGCCAGTTGAGCGCCCGCACGCCCATTTTATGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGTAGGACGGGCAGCAG
GATCGACAGCATGCAGAGAGGGACCAGGCT
Found at i:14828568 original size:158 final size:156
Alignment explanation
Indices: 14828068--14828568 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 156
14828058 CCCAGTCTAA
* * *
14828068 GCATACAGAGTTCATTACCAGTCTAAGATC-GAACCAGATCGAGGGTTGCAGCAGCAGGATC-AG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGGCAGCAGGATCGA-
* * * *
14828131 CAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCAGCCAGTTGAGTG
64 CAGCACGCA-GGGGGACCGGGCCAATCCCC-GCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCG
* * * ** *
14828196 CCCGGATGCCCGTTTTGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCATGGGTTTGCTTAG
** ** * * * *
14828226 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGC-GAGACCG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAG-GATCG
* * * * *** *
14828288 ACAGCACGCAGAGGGGAACTGGGCCAATCCCCGACTTGCGCATTATGCCTCTTCGATTGGCTCAG
63 ACAGCACGCAG-GGGG-ACCGGGCCAATCCCCG-CTTGCACATTCTGCCTCTCCGGCCGGCTGAG
* * *
14828353 CACCCACACGCTCGTTTCATGGG-TTGACTTAT
125 CGCCCGCACGCTCGTTTCATGGGTTTG-CTTAG
** * * * *
14828385 GCATATGGAGTTCATTCCTAGTCTAAGTTCAGACCGGATCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * *
14828450 GCACGTAGGGCGGACCGGACCAATCCCCAGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCGCC
66 GCACGCAGGG-GGACCGGGCCAATCCCC-GCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCC
* *
14828515 TGTACGCTCGTTTCATGGGTTTGCTTAG
129 CGCACGCTCGTTTCATGGGTTTGCTTAG
*
14828543 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14828569 TATTTTGATC
Statistics
Matches: 267, Mismatches: 61, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 143 0.54
159 116 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGCCAATCCCCGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTTGCTTAG
Found at i:14829610 original size:159 final size:157
Alignment explanation
Indices: 14829257--14829613 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 157
14829247 TAAGCTTATG
** * * * *
14829257 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAGGATCGACAGCATGCA
1 GAGTTCATTCATAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACGCA
* * * * * * * *
14829322 GGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTTTCTAGCCGGCTGAGCACCGGTAAGCC
66 GGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTTCCGAGCCGGCTCAGCACCCGCAAGCC
* * **
14829387 CGTTCCGTGGGTTGGCTTAGGCATAGG
131 CATTCCGTGGGTTGACTTAGGCATACA
** * * *
14829414 GAGTTCATTCCAT-GTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGACAACCCG
1 GAGTTCATT-CATAGTCTAAGATC-AGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACG
* * **
14829477 CAGAGGGGGATCAAGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGA-CCGGCTCAGTGCCCGC
64 C--AGGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCT-TCCGAGCCGGCTCAGCACCCGC
* * *
14829541 ACGCTCATTTCGTGGGTTGACTTAGGCATACA
126 AAGCCCATTCCGTGGGTTGACTTAGGCATACA
14829573 GAGTTCATTCATAGTCTAAGATCAGACCGGATCGAGGGTTG
1 GAGTTCATTCATAGTCTAAGATCAGACCGGATCGAGGGTTG
14829614 CGATAGCAGG
Statistics
Matches: 160, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
157 48 0.30
158 8 0.05
159 101 0.63
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCATAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACGCA
GGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTTCCGAGCCGGCTCAGCACCCGCAAGCC
CATTCCGTGGGTTGACTTAGGCATACA
Found at i:14829950 original size:26 final size:26
Alignment explanation
Indices: 14829920--14829972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14829910 GTTGACTTAG
14829920 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14829946 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14829972 G
1 G
14829973 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14830459 original size:26 final size:26
Alignment explanation
Indices: 14830423--14830472 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14830413 GACTTAGGCA
14830423 TACGGAGTTCATCCCCAGTCTAAGTG
1 TACGGAGTTCATCCCCAGTCTAAGTG
* *
14830449 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
14830473 ATTGAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGTG
Found at i:14830630 original size:184 final size:183
Alignment explanation
Indices: 14830270--14830618 Score: 439
Period size: 184 Copynumber: 1.9 Consensus size: 183
14830260 TTTGCATACA
* * * * * *
14830270 GAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGTAAGATCAATAGAACACA
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGCAAGATCAATAGAACACA
* ** * * *
14830335 GGGGGACCGGGCTAATCCCCGGCTTACGTATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCT
66 GGGGAACCAAGCTAATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCC
14830400 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTGTACG
131 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTGTACG
* * * ** *
14830453 GAGTTCATTCCTAGTCTAAGATTGAACCGGACCGAGGGTTACGATAGCAGGATCGGTAGTACACA
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGCAAGATCAATAGAACACA
* * * * *
14830518 GAGGGAACCAAGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGGT-GGACTGAGCGCCCGTACG
66 G-GGGAACCAAGCTAATCCCCGACTTACGCATTCTGCCTCTCCGATCGG-CTGAGCGCCCGCACG
* **
14830582 CCCGTTTCGTGGGTTGGCTTAGGCATTGGGAGTTCAT
129 CCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
14830619 TCCATGTCTA
Statistics
Matches: 138, Mismatches: 26, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
183 56 0.41
184 82 0.59
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (183 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGCAAGATCAATAGAACACA
GGGGAACCAAGCTAATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCC
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTGTACG
Found at i:14831340 original size:26 final size:26
Alignment explanation
Indices: 14831311--14831364 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14831301 GTTGACTTAG
14831311 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
* **
14831337 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
14831363 GC
1 GC
14831365 TTGAACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:14831703 original size:26 final size:26
Alignment explanation
Indices: 14831654--14831706 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14831644 GTTAGCTTAG
* *
14831654 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
14831680 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
14831706 G
1 G
14831707 AGTTTGGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:14832409 original size:26 final size:26
Alignment explanation
Indices: 14832373--14832425 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14832363 GTTGACTTAG
14832373 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* * *
14832399 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
14832425 G
1 G
14832426 TCGGATCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:14833603 original size:26 final size:26
Alignment explanation
Indices: 14833567--14833619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14833557 GTTGGCTTAG
*
14833567 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14833593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14833619 G
1 G
14833620 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14833744 original size:184 final size:181
Alignment explanation
Indices: 14833509--14834172 Score: 582
Period size: 184 Copynumber: 3.5 Consensus size: 181
14833499 GCCAACTAGT
* ** * * *
14833509 GCATTCTGCCTCTCCG-GCTGGCTGAGCGCTTGCATGCTCATTTCGTGGGTTGGCTTAGGCATGC
1 GCATT-TGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATAC
14833573 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
64 GGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGG
* * *
14833638 TTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGACCAGGTAGTTCCCCGACTTAC
128 TTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGA-CAGGTAGATCCCCGACTTGC
* *
14833693 GCATGTTGCCTCTCCGATCGGCTGAGCGCCCGCATGCTCTTTTTGTGGGTTGGCTTAGGCATACG
1 GCAT-TTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACG
* * *
14833758 GAGTTCATTCCATGTCTAAACTTACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGT
65 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGT
* * * * *
14833823 TGCAGCAGTAGGATCAGCAATAGGATCGGCAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTG
129 T------GT-GG--CAGC---AGGATCAGCAGCACGCAGAGGGGA-CAGGTAGATCCCCGACTTG
*
14833888 T
181 C
* * *
14833889 GTATTCTGCCTCTCCGATCGACCTCTTCGATCGATTGAGTGCCCAG-ACGCTCGTTTCGTGGGTT
1 GCATT-TGCCTCTCCGATCG--------G--C---TGAGCGCCC-GCACGCTCTTTTCGTGGGTT
* *
14833953 GACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
51 GGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
14834017 AACTGGACCCAGGGTTGTGGCAGCAGGATCAACAGCACGCA-AGGGGGACAGGGCCA-ATCCCCG
115 ATC-GGACCGAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGA-GGGGACA-GG-TAGATCCCCG
*
14834080 GCTTGC
176 ACTTGC
** * * * * *
14834086 GCATTTTGCCTCTCCGGCCGGCTGAGCACCCTCACGCCCGTTTTCATGGGTTGGCTTAGGCATAG
1 GCA-TTTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC-TTTTCGTGGGTTGGCTTAGGCATAC
*
14834151 GGAGTTCATTCCATCTCTAAGC
64 GGAGTTCATTCCATGTCTAAGC
14834173 CCTAGTCAGA
Statistics
Matches: 388, Mismatches: 54, Indels: 75
0.75 0.10 0.15
Matches are distributed among these distances:
184 132 0.34
185 39 0.10
187 1 0.00
189 1 0.00
190 2 0.01
191 2 0.01
193 4 0.01
195 1 0.00
196 53 0.14
197 46 0.12
198 2 0.01
200 4 0.01
202 2 0.01
203 2 0.01
204 1 0.00
206 1 0.00
208 3 0.01
209 88 0.23
210 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (181 bp):
GCATTTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTG
TGGCAGCAGGATCAGCAGCACGCAGAGGGGACAGGTAGATCCCCGACTTGC
Found at i:14833996 original size:26 final size:26
Alignment explanation
Indices: 14833960--14834012 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14833950 GTTGACTTAG
14833960 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
14833986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14834012 G
1 G
14834013 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14835237 original size:26 final size:26
Alignment explanation
Indices: 14835207--14835256 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14835197 TGGGTTGACT
*
14835207 TAGGCATATGGAGTTCATCCCCAGCC
1 TAGGCATACGGAGTTCATCCCCAGCC
*
14835233 TAGGCATACGGAGTTCATTCCCAG
1 TAGGCATACGGAGTTCATCCCCAG
14835257 TCTAAGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGCC
Found at i:14835556 original size:159 final size:159
Alignment explanation
Indices: 14835383--14835739 Score: 370
Period size: 158 Copynumber: 2.3 Consensus size: 159
14835373 CCGTTTCATC
* * * * * *
14835383 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGGCA
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGCGACA
* * *
14835447 GC-GAGACCGACAGCATGCAGAGAGGGACCGAGCC-GATCCTCGGCTTGCGCATTATGGCTCTAT
66 GCAG-GACCGACAGCATGCAG-GAGGGACCGAGCCAG-TCCCCGGCTTGCGCATTATGCCTCT-C
* *
14835510 AGTC-GGCTCAGCACCCGA-ACGCTCATTTCGTG
127 AGGCTGGCTAAGCACCC-ACACGCTCATTTCGTG
* * *
14835542 GGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGTTTGCGAC
1 GGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCGAGGGTTGCGAC
* * * * * * * *
14835605 AGCAGGATCGACAGCATGTAGGGGGGATCGAGCCAGTCCCCGGTTTGCTCATTCTGCCTCTCCGG
65 AGCAGGACCGACAGCATGCAGGAGGGACCGAGCCAGTCCCCGGCTTGCGCATTATGCCTCTCAGG
* *
14835670 CTGGCTAAGCGCCCACACGCTCGTTTCGTG
130 CTGGCTAAGCACCCACACGCTCATTTCGTG
*
14835700 GGTT-AGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCA
1 GGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
14835740 TAAGGAGTTC
Statistics
Matches: 164, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
157 7 0.04
158 86 0.52
159 67 0.41
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGCGACA
GCAGGACCGACAGCATGCAGGAGGGACCGAGCCAGTCCCCGGCTTGCGCATTATGCCTCTCAGGC
TGGCTAAGCACCCACACGCTCATTTCGTG
Found at i:14836192 original size:159 final size:157
Alignment explanation
Indices: 14835827--14836222 Score: 427
Period size: 159 Copynumber: 2.5 Consensus size: 157
14835817 CGCAGGGGGG
* * *
14835827 ATTCTGCCTCTCCGACCGCCTGAGCACCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATAAGAA
1 ATTCTGCCTCTCCGACCG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGA
* * * * * *
14835892 GTTCA-TCCCTAGTCTAAGAGCAAACAGGATCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAG
65 GTTCATTCCAT-GTCGAAGAGCAAACAGAACCGAGGGTTGTGGTAGCAGGACCGATAGCACGCAG
* * *
14835956 AGGGGATCAGGCTGATCCCCGATTTGCAT
129 AGGGGACCAGGCTGATCCCCGACTTGCAC
* * * * * *
14835985 ATTCTGCCTCTCCAGTCTGCTAAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGA
1 ATTCTGCCTCTCC-GACCGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGA
** ** * * *
14836050 GTTCATTCCATGTCGAAGCCTCAGTCA-AACCGAGGGTTGTTGTAGCAGGACCGGTAGGACGCAG
65 GTTCATTCCATGTCGAAG-AGCAAACAGAACCGAGGGTTGTGGTAGCAGGACCGATAGCACGCAG
* * * *
14836114 AGGGGGACCGGGCTGATTCCTGACTTGCGC
129 A-GGGGACCAGGCTGATCCCCGACTTGCAC
* * * *
14836144 ATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTCCGACCG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGA
14836209 GTTCATTCCATGTC
65 GTTCATTCCATGTC
14836223 TAAGTATATG
Statistics
Matches: 196, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
158 97 0.49
159 99 0.51
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ATTCTGCCTCTCCGACCGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAG
TTCATTCCATGTCGAAGAGCAAACAGAACCGAGGGTTGTGGTAGCAGGACCGATAGCACGCAGAG
GGGACCAGGCTGATCCCCGACTTGCAC
Found at i:14837464 original size:26 final size:26
Alignment explanation
Indices: 14837414--14837466 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14837404 GTTGGCTTAG
*
14837414 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
14837440 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
14837466 G
1 G
14837467 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:14837830 original size:26 final size:26
Alignment explanation
Indices: 14837794--14837846 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14837784 GTTGACTTAG
*
14837794 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
14837820 GCATACGGAGTTTATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
14837846 G
1 G
14837847 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:14838123 original size:159 final size:156
Alignment explanation
Indices: 14837947--14838323 Score: 424
Period size: 159 Copynumber: 2.4 Consensus size: 156
14837937 CTGGCTGAGT
* * *
14837947 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-
1 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCC-AGA
* * * **
14838011 CCAGACTGAGGGTTATGGCAACGGGATCGACAGCACGCA-GAGGGGGACCG-GGTCGATCCCCGG
65 CCAGACTAAGGGTTATGGCAACAGGATCGACAGCACGCAGGA-GGGGACCGAGCT-GATCCCCAA
* *
14838074 TTTACGCATTATGCCTCTTAAACCGGTTCAGC-A
128 CTTACGCATTATACCTC-T---CCGG-TCAGCGA
* * * **
14838107 -CCCGAACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGA
1 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATT-CCATGTCTAAGCCCAGA
* * *
14838170 TCAGACTAAGGGTTATGGTAGCAGGATCGACAGCACGCAGGAGGGGACCGAGCTGATCCCCAACT
65 CCAGACTAAGGGTTATGGCAACAGGATCGACAGCACGCAGGAGGGGACCGAGCTGATCCCCAACT
*
14838235 TACGCATTCTACCTCTCCGGTCAGCTGA
130 TACGCATTATACCTCTCCGGTCAGC-GA
*
14838263 GCGCCCGGACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
1 --GCCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
14838324 ATATGGAGTT
Statistics
Matches: 183, Mismatches: 24, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
154 5 0.03
155 4 0.02
156 1 0.01
158 6 0.03
159 160 0.87
160 7 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCCCGAACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCAGAC
CAGACTAAGGGTTATGGCAACAGGATCGACAGCACGCAGGAGGGGACCGAGCTGATCCCCAACTT
ACGCATTATACCTCTCCGGTCAGCGA
Found at i:14838331 original size:26 final size:26
Alignment explanation
Indices: 14838293--14838348 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14838283 TGGGTTGGCT
14838293 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
14838319 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
14838345 TAAG
1 TAAG
14838349 ATCAGATCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:14838540 original size:26 final size:26
Alignment explanation
Indices: 14838503--14838555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14838493 GTTGACTTAG
14838503 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCCT-GTCTAA
*
14838529 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCTGTCTAA
14838555 G
1 G
14838556 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCTGTCTAA
Found at i:14838876 original size:26 final size:26
Alignment explanation
Indices: 14838846--14838898 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14838836 GTTGACTTAC
*
14838846 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14838872 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14838898 G
1 G
14838899 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14839609 original size:26 final size:26
Alignment explanation
Indices: 14839570--14839622 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14839560 GTTGACTTAG
14839570 GCATATGGACTTCATCCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
* *
14839596 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
14839622 G
1 G
14839623 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGACTTCATCCCCAGTCTAA
Found at i:14840480 original size:26 final size:26
Alignment explanation
Indices: 14840450--14840502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14840440 GTTGACTTAG
14840450 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
14840476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14840502 G
1 G
14840503 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14842107 original size:26 final size:26
Alignment explanation
Indices: 14842077--14842126 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14842067 GGCTTAGGCA
14842077 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
14842103 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
14842127 GTCAGACAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:14842585 original size:26 final size:26
Alignment explanation
Indices: 14842555--14842607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14842545 GTTGGCTTAG
*
14842555 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
14842581 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
14842607 G
1 G
14842608 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:14842803 original size:26 final size:26
Alignment explanation
Indices: 14842751--14842803 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14842741 GTTGGCTTAG
* *
14842751 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
14842777 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
14842803 G
1 G
14842804 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:14842804 original size:196 final size:196
Alignment explanation
Indices: 14842482--14842974 Score: 648
Period size: 196 Copynumber: 2.5 Consensus size: 196
14842472 GGGACTAGGT
* * * * *
14842482 CGATCCCCGGCATGCGCATTCTGCCTCTCCGATTGATTGAGCGCCTGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
14842547 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCG
* * * * *
14842612 GACCGGACCGAGGGTTGTGACAGCAGGACCAGCAGCAGGATCGACAGCATGCAGGGGGGATCGGG
131 GACCGGACCGAGGGTTGCGACAACAGGACCAGCAGCAGGATCGACAGCACGCAGGAGGGATCGAG
14842677 C
196 C
* * * *
14842678 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGTACGCTAGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
14842743 TGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCATATGGAGTTCATTCCCAA-TCTAAGATC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCAAGTCTAAGATC
** ** * ** *
14842807 GGACCGGGTCGAGGGTTGCGGTAACAGGACCAGCAGCAGGATTGGTAGCACGCAGGAGGGATCTA
130 GGACCGGACCGAGGGTTGCGACAACAGGACCAGCAGCAGGATCGACAGCACGCAGGAGGGATCGA
14842872 GC
195 GC
* * * * * * * * *
14842874 CGATCCCTGACTTCCACATTCTACCTTTTCGATCGGCTGAGCGCCCGCACACTCGTTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
*
14842939 TGGTTTAGTG-ATACGGAGTTCATTCCATGTCTAAGC
66 TGGCTTAG-GCATACGGAGTTCATTCCATGTCTAAGC
14842975 CATAGCCGGA
Statistics
Matches: 256, Mismatches: 39, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
196 251 0.98
197 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (196 bp):
CGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCG
GACCGGACCGAGGGTTGCGACAACAGGACCAGCAGCAGGATCGACAGCACGCAGGAGGGATCGAG
C
Found at i:14843179 original size:26 final size:26
Alignment explanation
Indices: 14843131--14843183 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14843121 GTTGACTTAG
* *
14843131 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCACTAGTCTAA
14843157 GCATACGAAGTTCATTCAC-AGTCTAA
1 GCATACGAAGTTCA-TCACTAGTCTAA
14843183 G
1 G
14843184 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCACTAGTCTAA
Done.