Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 115 of 402
Found at i:14843669 original size:26 final size:26
Alignment explanation
Indices: 14843638--14843709 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
14843628 TAGGCTTACG
14843638 GAGTTCATTCCATGTCTAAGCATACA
1 GAGTTCATTCCATGTCTAAGCATACA
*
14843664 GAGTTCATTCCATGTCTAAGCATACG
1 GAGTTCATTCCATGTCTAAGCATACA
14843690 GAGTTCATTCCCA-GTCTAAG
1 GAGTTCATT-CCATGTCTAAG
14843710 ATTGGACCGG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 41 0.93
27 3 0.07
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCATGTCTAAGCATACA
Found at i:14843890 original size:26 final size:26
Alignment explanation
Indices: 14843853--14843905 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14843843 GCTGACTTAG
*
14843853 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGAAGTTCATT-CCCAGTCTAA
*
14843879 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14843905 G
1 G
14843906 ATTGAATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14846720 original size:26 final size:26
Alignment explanation
Indices: 14846684--14846736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14846674 GTTGACTTAG
14846684 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14846710 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14846736 G
1 G
14846737 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14847055 original size:26 final size:26
Alignment explanation
Indices: 14847026--14847078 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14847016 GTTGACTTAG
*
14847026 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACAGAGTTCACTCCCA-GTCTAA
*
14847052 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
14847078 G
1 G
14847079 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:14847731 original size:26 final size:25
Alignment explanation
Indices: 14847697--14847748 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
14847687 GTTAGCTTAG
14847697 GCATAGGAGTTCATT-CCATGTCTAA
1 GCATAGGAGTTCATTCCCA-GTCTAA
14847722 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATTCCCAGTCTAA
14847748 G
1 G
14847749 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 17 0.68
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAGTCTAA
Found at i:14848156 original size:26 final size:26
Alignment explanation
Indices: 14848120--14848172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14848110 GTGGACTTAG
14848120 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14848146 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14848172 G
1 G
14848173 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14849373 original size:26 final size:26
Alignment explanation
Indices: 14849343--14849395 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14849333 GTTGACTTAG
*
14849343 GCATACGAAGTTCGTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
14849369 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14849395 G
1 G
14849396 ATTTTAAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14849944 original size:735 final size:735
Alignment explanation
Indices: 14848756--14850132 Score: 2240
Period size: 735 Copynumber: 1.9 Consensus size: 735
14848746 TCGGATCATC
* * **
14848756 GTCGGAGAGCCTAACCGACGGCATTGGGGGTTCTGGCGATTGGGGGGGCCGGGGGGTGTGCGCAC
1 GTCGGAGAGCCTAACCGACAGCATTGGGGGTTCTAGCGATTGGGGGGGCAAGGGGGTGTGCGCAC
14848821 ATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGA
66 ATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGA
*
14848886 GAACTCACACCCCCTTAAAGATCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
131 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
14848951 TCTGACATGGGGGACACTTTTTTCAAACGCTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGA
196 TCTGAAATGGGGGACACTTTTTTCAAACGCTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGA
* ** * *
14849016 ATTTTTTTGCGCATGCCAAAAAAAATGGAAGGACCACCTCTACCAAATTTGGGGACAAAAATCTT
261 ATTCTTTTGCGCATGCCAAAAAAAATACAAGAACCACCTCTACCAAATTTGGAGACAAAAATCTT
* * *
14849081 TCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATG
326 TCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATAATGAAAAATAGAAAACG
14849146 GGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGCATGAATTTACAAGCCATA
391 GGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGCATGAATTTACAAGCCATA
* * *
14849211 AAAATGGCATTGGCATGGTAGAAATATGAAGATCTGCTTGAACCCACCTACCACCTGTTCGATCC
456 AAAAGGGCATTGGCATGGCAGAAATATGAAGATCTGCTTGAACCCACCTACCACCCGTTCGATCC
* * * * * *
14849276 CCGGCTTGCGCATCCTGCCTCTTTGGTCAGCTAAGCACCCACACACTCGTTTCGTGGGTTGACTT
521 CCGGCTTGCACATCCTGCCTCTCTGATCAGCTAAGCACCCACACACTCATTTCCTGGGTGGACTT
* **
14849341 AGGCATAC-GAAGTTCGTCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTAAGC
586 AGGCATACAG-AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTAAGC
14849405 CACGGTGCACATGCTGGGCTAGGGCATTTGCTGGTGCTGCTTTTTTTTCGCCCGGGGCACCATCG
650 CACGGTGCACATGCTGGGCTAGGGCATTTGCTGGTGCTGCTTTTTTTTCGCCCGGGGCACCATCG
14849470 CCAGAGCGTCACTGGAGCATT
715 CCAGAGCGTCACTGGAGCATT
* *
14849491 GTCGGAGAGCCTAACCGGCAGCATTTGGGGTTCTAGCGATTGGGGGGGTCAAGGGGGTGTGCGCA
1 GTCGGAGAGCCTAACCGACAGCATTGGGGGTTCTAGCGATTGGGGGGG-CAAGGGGGTGTGCGCA
*
14849556 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTG
14849621 A-AGACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
130 AGA-ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
* *
14849685 TGTCTGAAAT-GGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCT
194 TGTCTGAAATGGGGGACACTTTTTTCAAACGCTCACAAAATCTTCTCCACTTCGAGTTTTTAGCT
* * *
14849749 GAATTCTTTTGTGCATGCCAAAAAAAATACAAGAATCACCTCTACCAAATTTGGATAC-AAAATA
259 GAATTCTTTTGCGCATGCCAAAAAAAATACAAGAACCACCTCTACCAAATTTGGAGACAAAAAT-
* * * *
14849813 CTTTTTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATAATGAGAAATAGAAA
323 CTTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATAATGAAAAATAGAAA
* * *
14849878 ACGGTTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCC
388 ACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGCATGAATTTACAAGCC
* *
14849943 ATAAAAAGGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTTGA
453 ATAAAAAGGGCATTGGCATGGCAGAAATATGAAGATCTGCTTGAACCCACCTACCACCCGTTCGA
* * * * * * *
14850008 TTCTCGGCTTGCACATCCTGCCTCTCTGATCGGCTGAGCATCCACACGCTTATTTCCTGGGTGGA
518 TCCCCGGCTTGCACATCCTGCCTCTCTGATCAGCTAAGCACCCACACACTCATTTCCTGGGTGGA
14850073 CTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
583 CTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
14850133 CAGACCGGAC
Statistics
Matches: 588, Mismatches: 50, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
734 5 0.01
735 434 0.74
736 149 0.25
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (735 bp):
GTCGGAGAGCCTAACCGACAGCATTGGGGGTTCTAGCGATTGGGGGGGCAAGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGGACACTTTTTTCAAACGCTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGA
ATTCTTTTGCGCATGCCAAAAAAAATACAAGAACCACCTCTACCAAATTTGGAGACAAAAATCTT
TCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATAATGAAAAATAGAAAACG
GGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGCATGAATTTACAAGCCATA
AAAAGGGCATTGGCATGGCAGAAATATGAAGATCTGCTTGAACCCACCTACCACCCGTTCGATCC
CCGGCTTGCACATCCTGCCTCTCTGATCAGCTAAGCACCCACACACTCATTTCCTGGGTGGACTT
AGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTAAGCC
ACGGTGCACATGCTGGGCTAGGGCATTTGCTGGTGCTGCTTTTTTTTCGCCCGGGGCACCATCGC
CAGAGCGTCACTGGAGCATT
Found at i:14850114 original size:26 final size:26
Alignment explanation
Indices: 14850078--14850130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14850068 GTGGACTTAG
14850078 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14850104 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14850130 G
1 G
14850131 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14850481 original size:159 final size:158
Alignment explanation
Indices: 14850111--14850481 Score: 422
Period size: 159 Copynumber: 2.3 Consensus size: 158
14850101 TAAGCATACA
* * * *
14850111 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCGACAGCACGCA
* * * * * *
14850176 GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGC
66 GGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGC
* * *
14850241 CCATTTTGTGGGTTGGCTTAGAAATAGG
131 CCATTTCGTGGGTTGACCTAGAAATAGG
* ** * ** **
14850269 GAGTTCATTCCTTGTCTAAGCCCTAG--CGAGATCGAGAGTTGTTGCAGTGGGACCGACAGCACG
1 GAGTTCATTCCTAGTCTAAGATC-AGACCG-GATCGAGGGTTGCGGCAGCAGGACCGACAGCACG
* * *
14850332 CAGAGGGGGACCGATCCGATCCTCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCA
64 CAG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCA
* * ** *
14850397 CGCTCGTTTCGTGGGTTGACCTAGGCATATG
128 CGCCCATTTCGTGGGTTGACCTAGAAATAGG
* *
14850428 GAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGACC
1 GAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACC
14850482 AGTAGCAGGA
Statistics
Matches: 169, Mismatches: 39, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 50 0.30
159 115 0.68
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCGACAGCACGCA
GGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGC
CCATTTCGTGGGTTGACCTAGAAATAGG
Found at i:14850637 original size:170 final size:171
Alignment explanation
Indices: 14850357--14850719 Score: 403
Period size: 170 Copynumber: 2.1 Consensus size: 171
14850347 CCGATCCTCA
* * ** *
14850357 GCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGG
1 GCTTGCGCATTATGCCTCTCCGACCAGCTCAGAACCCGCACGCTCATTTCGTGGGTTGACCTAGG
* * * * **
14850422 CATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGACCAGTAG
66 CATACGGAGTTCATTCCTAGTCTAAGACCAGACCAGATCGAGGGTTACGGCAGCAGGACCAACAG
14850487 CAGGATCGACAGCACACAGAGGG-GACCAGGCCATTCTTCG
131 CAGGATCGACAGCACACAGAGGGAGACCAGGCCATTCTTCG
* * * * *
14850527 GCTTGCGCATTCTGTCTCTCCGACCAGCTGAGAACCCGCACGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTATGCCTCTCCGACCAGCTCAGAACCCGCACGCTCATTTCGTGGGTTGACCTAGG
* ** *
14850592 CATACGGAGTTCATT-CTATGTCTAAGCCCCAG-CCAGA-CTGAGGGTTGTGGCAGTAGGACCAA
66 CATACGGAGTTCATTCCTA-GTCTAAG-ACCAGACCAGATC-GAGGGTTACGGCAGCAGGACCAA
* * * * **
14850654 CAGCGGGATCGATAGCACACAGAGGGAGATCAGGCTGA-TCCCCG
128 CAGCAGGATCGACAGCACACAGAGGGAGACCAGGC-CATTCTTCG
**
14850698 GCTTGTACATTATGCCTCTCCG
1 GCTTGCGCATTATGCCTCTCCG
14850720 GCCGACCTCT
Statistics
Matches: 158, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
169 4 0.03
170 121 0.77
171 32 0.20
172 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (171 bp):
GCTTGCGCATTATGCCTCTCCGACCAGCTCAGAACCCGCACGCTCATTTCGTGGGTTGACCTAGG
CATACGGAGTTCATTCCTAGTCTAAGACCAGACCAGATCGAGGGTTACGGCAGCAGGACCAACAG
CAGGATCGACAGCACACAGAGGGAGACCAGGCCATTCTTCG
Found at i:14850811 original size:26 final size:26
Alignment explanation
Indices: 14850775--14850833 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
14850765 GTTGACTTAG
*
14850775 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
14850801 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14850827 -CAT-CAGA
1 GCATACAGA
14850834 CCAGACCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 20 0.65
27 4 0.13
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14851209 original size:159 final size:159
Alignment explanation
Indices: 14850864--14851303 Score: 346
Period size: 159 Copynumber: 2.8 Consensus size: 159
14850854 GTAGGATCGG
* * * * * * * **
14850864 CAGCACGCAG-GGGGGA-TCGAGCCGATCCTCAGCTTATGCATTCTGCCTCTCCGACCGGCAGAG
1 CAGCACGCAGAGGGGGACT-GGGCTGATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCTCAG
* * * *
14850927 CAACCGTACAC-C-CGTTTCGTGGGTT-AGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGTC
65 C-ACC-CACACGCTCATTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCATATCTAAGT-
*
14850988 CCAGTCAGACCGAGAGTTGTGGTAGTGGTACTGA
126 CCAGTCAGACCGAGAGTTGTGGCAGTGGTACTGA
* * * * * *
14851022 CAGCACGCAGAGGGGGACTGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCG-GCTGGCTCAG
1 CAGCACGCAGAGGGGGACTGGGCTGATCCCCAGCTTACGCATTATGCCTCTCCGATC-AGCTCAG
* * * *
14851086 CGCCCACACGTTCTTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGAT-CA
65 CACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAAG-TCCA
* * * *
14851149 GATCGGATCGAGGGTTGTGGCAGTAGG-ATTGA
129 G-TCAGACCGAGAGTTGTGGCAGT-GGTACTGA
* * * * * * * *
14851181 GAGCACGTAGGGGGGGATTGGG-TCGATCCCCAGCTTACGTATTCTGCCTCTCCGATCAGTTGAG
1 CAGCACGCAGAGGGGGACTGGGCT-GATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCTCAG
* * * *
14851245 CACCCGCACGCTCATTTCGTGGGTTGGCGTAGGCATACGGAGTTCATT-CCATGTCTAAG
65 CACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAAG
14851304 CATATGGAGT
Statistics
Matches: 225, Mismatches: 44, Indels: 25
0.77 0.15 0.09
Matches are distributed among these distances:
157 4 0.02
158 20 0.09
159 192 0.85
160 9 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CAGCACGCAGAGGGGGACTGGGCTGATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCTCAGC
ACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATATCTAAGTCCAGT
CAGACCGAGAGTTGTGGCAGTGGTACTGA
Found at i:14851313 original size:26 final size:26
Alignment explanation
Indices: 14851277--14851329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14851267 GTTGGCGTAG
14851277 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
14851303 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14851329 G
1 G
14851330 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14852037 original size:26 final size:26
Alignment explanation
Indices: 14852003--14852053 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14851993 AGACTTAGGC
*
14852003 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* *
14852029 ATACAGAGTTTATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
14852054 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:14852382 original size:171 final size:171
Alignment explanation
Indices: 14852103--14852422 Score: 378
Period size: 171 Copynumber: 1.9 Consensus size: 171
14852093 CAGGATCGGT
* * * *
14852103 AGCACGCAGGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTACCTCTCTGACCAGCTGAGTG
1 AGCACGCAGAGGGGGACCAGGCCGATCCCTGACTTGTGCATTATACCTCTCTGACCAGCTCAGTG
* * * * *
14852168 CCTGCACGCTCGTTTCATGGATTGGCTTAGGCATATCGAGTTCAT-TCCATGTCTAAGCCCCAG-
66 CCCGCACGCTCATTTCATGGATTGACTTAGGCATATCGAGTTCATCCCCA-GTCTAAG-ACCAGA
*
14852231 CCAGACCGAGGGTTGTGGCAGCAGGACTGGCAGTGGGATCGAC
129 CCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGTGGGATCGAC
* * * * * * * *
14852274 AGCACGTAGAGGGGGACCGGGCTGATCTCTGACTTGTGCATTATGCCTCTTTGGCCGGCTCAGTG
1 AGCACGCAGAGGGGGACCAGGCCGATCCCTGACTTGTGCATTATACCTCTCTGACCAGCTCAGTG
* * * *
14852339 CCCGTACGCTCATTTCATGGGA-TGACTTATGCATA-CAGAGTTCATCCCCAGTCTAAGATCGGA
66 CCCGCACGCTCATTTCAT-GGATTGACTTAGGCATATC-GAGTTCATCCCCAGTCTAAGACCAGA
14852402 CCAGACCAAGGGTTGTGGCAG
129 CCAGACCAAGGGTTGTGGCAG
14852423 TAAGATCGAC
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
170 3 0.02
171 114 0.93
172 6 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (171 bp):
AGCACGCAGAGGGGGACCAGGCCGATCCCTGACTTGTGCATTATACCTCTCTGACCAGCTCAGTG
CCCGCACGCTCATTTCATGGATTGACTTAGGCATATCGAGTTCATCCCCAGTCTAAGACCAGACC
AGACCAAGGGTTGTGGCAGCAGGACTGGCAGTGGGATCGAC
Found at i:14853161 original size:26 final size:26
Alignment explanation
Indices: 14853125--14853177 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14853115 GTTGACTTAG
14853125 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14853151 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14853177 G
1 G
14853178 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14853339 original size:26 final size:26
Alignment explanation
Indices: 14853309--14853361 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14853299 GTTGGCTTAG
*
14853309 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGGTCATTCCCA-GTCTAA
*
14853335 GCATATGGAGGTCATTCCCAGTCTAA
1 GCATAGGGAGGTCATTCCCAGTCTAA
14853361 G
1 G
14853362 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATAGGGAGGTCATTCCCAGTCTAA
Found at i:14853459 original size:11 final size:11
Alignment explanation
Indices: 14853445--14853476 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
14853435 CGGAGCACCA
14853445 TCGAAGCATCG
1 TCGAAGCATCG
14853456 TCGAAGCATCG
1 TCGAAGCATCG
14853467 TCGAAGCATC
1 TCGAAGCATC
14853477 ACTGGAGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (11 bp):
TCGAAGCATCG
Found at i:14853463 original size:22 final size:22
Alignment explanation
Indices: 14853429--14853476 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
14853419 GCTTAGGCAC
*
14853429 CATCGCCGGAGCACCATCGAAG
1 CATCGCCGAAGCACCATCGAAG
* * *
14853451 CATCGTCGAAGCATCGTCGAAG
1 CATCGCCGAAGCACCATCGAAG
14853473 CATC
1 CATC
14853477 ACTGGAGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.33, G:0.25, T:0.15
Consensus pattern (22 bp):
CATCGCCGAAGCACCATCGAAG
Found at i:14854015 original size:26 final size:26
Alignment explanation
Indices: 14853985--14854037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14853975 GTTGACTTTG
*
14853985 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
14854011 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
14854037 G
1 G
14854038 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:14854388 original size:159 final size:158
Alignment explanation
Indices: 14854018--14854442 Score: 449
Period size: 159 Copynumber: 2.7 Consensus size: 158
14854008 TAAGCATACA
* * * *
14854018 GAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGAGTTGCGATAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGCA
* * * * * * * * ** **
14854083 GGGGGGATCGGGCCTATCTCCGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGTGCCCGTGCGC
66 GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCTAGCTCAACGCCCGCACGC
*
14854148 CCATTTCGTGGGTTGGCTTAGGCATAAG
131 CCATTTCGTGGGTTGACTTAGGCATAAG
* ** * * * * * * **
14854176 GACTTCATT-CCATGTCTAAGCCCCAG-CTGGACTAAGGGTTGTGGCAGTGGGATCGGTAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACG
* * *
14854239 CAGAGGGGGATCGGGTCGATCCCCGATTTGCGCATTATGCCTCTCCAGCTAGCTCAACGCCCGCA
64 CAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCTAGCTCAACGCCCGCA
* * * *
14854304 CGCTCGTTTTGTGGGTTGACTTAGGCATATG
128 CGCCCATTTCGTGGGTTGACTTAGGCATAAG
* **
14854335 GAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAGAGTTGCGGTAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGCA
* *
14854400 GGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCC
66 GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
14854443 GTTCGGTTGA
Statistics
Matches: 208, Mismatches: 54, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 83 0.40
159 119 0.57
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGCA
GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCTAGCTCAACGCCCGCACGC
CCATTTCGTGGGTTGACTTAGGCATAAG
Found at i:14854486 original size:158 final size:158
Alignment explanation
Indices: 14854018--14854512 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 158
14854008 TAAGCATACA
* * * *
14854018 GAGTTCATTCCCA-GTCTAAGATCAAACCGGACTGAGAGTTGCGATAGCAGGATCGACAGCACAC
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGC
* * * * * **
14854082 AGGGGGGATCGGGCCTATCTCCGGCTTGTGCATTCTGCCTCTCCGGTTGGCTGAGTGCCCGTGCG
65 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGTTGGCTGAGTGCCCGCACG
* *
14854147 CCCATTTCGTGGGTTGGCTTAGGCATAAG
130 CTCGTTTCGTGGGTTGGCTTAGGCATAAG
* ** * * * * * * **
14854176 GACTTCATTCCATGTCTAAGCCCCAG-CTGGACTAAGGGTTGTGGCAGTGGGATCGGTAGCACGC
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGC
* * * * * * **
14854240 AGAGGGGGATCGGGTCGATCCCCGATTTGCGCATTATGCCTCTCCAGCTAGCTCAACGCCCGCAC
65 AG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGTTGGCTGAGTGCCCGCAC
* * *
14854305 GCTCGTTTTGTGGGTTGACTTAGGCATATG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAAG
* **
14854335 GAGTTCATTCCCA-GTCTAAGATTAGACCAAACTGAGAGTTGCGGTAGTAGGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGC
* * * *
14854399 AGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCC-GTTCGGTTGAGTGCCCGCAT
65 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGTT-GGCTGAGTGCCCGCAC
* * * * *
14854463 GTTTGTTTCATGGGTTGGGTTAGGCATACG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAAG
14854493 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
14854513 CATACGAAGT
Statistics
Matches: 262, Mismatches: 68, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 8 0.03
158 132 0.50
159 119 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGAGTTGCGGTAGTAGGATCGACAGCACGCA
GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGTTGGCTGAGTGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATAAG
Found at i:14854897 original size:26 final size:26
Alignment explanation
Indices: 14854867--14854919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14854857 GCTGACTTAG
14854867 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
14854893 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
14854919 G
1 G
14854920 ATGGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:14855349 original size:157 final size:157
Alignment explanation
Indices: 14854932--14855388 Score: 449
Period size: 157 Copynumber: 2.9 Consensus size: 157
14854922 GGGATCAAAT
* * * * *
14854932 CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGTGGACTGGG-TCGATCCCCGGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCT-GATCCCCAGCTTGTGCA
* * * * *
14854996 TTCTACCTCTCCGTCCGGCTGACCGCCCCCACGC-CTGTTTCATGGGTTGGTTTAGGCATAGGGA
65 TTCTACCTCTCCGT-CGGCTGAGCACCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGA
*
14855060 GTTCATTCCATGTCTAAACCCTAGCCAGAC
128 GTTCATTCCATGTCTAAAACCTAGCCAGAC
** * * * * * *
14855090 CGAGGGTTGTGGCAGTGGGACCGACAGTACACAGAGGGGGACTGGGCCGATCCTCTGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACTGGGCTGATCCCCAGCTTGTGCA
* * * * * *
14855155 TTATACCTCTCCGGCCAGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGAAG
65 TTCTACCTCTCC-GTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * *
14855220 TTAATTCCA-GTC-AAAGATC-AGATCGGAC
129 TTCATTCCATGTCTAAA-ACCTAG-CCAGAC
* * * * *
14855248 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGGTCCCCAACTTGCGTAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCTGATCCCCAGCTTGTGCAT
* * * *
14855313 TCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTCG-TTCTGTGGGTTGGCTTAGGCACACGGAG
66 TCTACCTCTCCG-TCGGCTGAGCACCCGCACGCTCGTTTC-ATGGGTTGGCTTAGGCATACGGAG
14855377 TTCATTCCATGT
129 TTCATTCCATGT
14855389 ATAAGCGTAT
Statistics
Matches: 238, Mismatches: 52, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.02
157 84 0.35
158 65 0.27
159 83 0.35
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCTGATCCCCAGCTTGTGCAT
TCTACCTCTCCGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAAACCTAGCCAGAC
Found at i:14855594 original size:26 final size:26
Alignment explanation
Indices: 14855563--14855615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14855553 GTTGATTTAG
*
14855563 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGATCATCCCCAGCCTAA
* *
14855589 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGCCTAA
14855615 G
1 G
14855616 ATCAGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGCCTAA
Found at i:14855951 original size:159 final size:158
Alignment explanation
Indices: 14855649--14856091 Score: 410
Period size: 159 Copynumber: 2.8 Consensus size: 158
14855639 GCAGCAGGAT
* * * * * * *
14855649 CGACAGCACGCAGGGGGGACC-GAGCCGATCCTC-AGCTTGTGCATTTTGCCTCTCCGGCTGGCT
1 CGACAGCAAGCAAGGGGGACCAG-GCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGACCGGCT
* * * * *
14855712 GAGCGCCCGCACACCCGTTTCATGGGTCGGCTTAGGCATAGGGAGTTCATT-ACATGTCTAAGCC
64 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCC
* * * *
14855776 CCAGCCAGACCGAGGGTTGTGGCAACGAGAC
128 CCAGCCAGACCAAGGGTTGCGACAACAAGAC
** *
14855807 C-AGCAGCAAGCAAAGGGGGACCAGGTTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACT
1 CGA-CAGCAAGC-AAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCT
* * * *
14855871 CAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
64 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-CC
** * * * *
14855936 TGATCGA-ACCAAGGGTTGCGACAGCAAGAT
128 CCAGCCAGACCAAGGGTTGCGACAACAAGAC
* * * * * * *
14855966 CGACAGCACGCAGGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGA
1 CGACAGCAAGCAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTGA
* * * * * **
14856031 GCACTCACACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAGC
66 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
14856092 ATATGGAGTT
Statistics
Matches: 228, Mismatches: 50, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 103 0.45
159 115 0.50
160 9 0.04
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
CGACAGCAAGCAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCA
GCCAGACCAAGGGTTGCGACAACAAGAC
Found at i:14856054 original size:158 final size:158
Alignment explanation
Indices: 14855589--14856090 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 158
14855579 CCCAGCCTAA
* * * *
14855589 GCATACGGAGATCATTCCCAGTCTAAGATCAGATTGAACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * * *
14855654 GCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGTGCATTTTGCCTCTCCGGCTGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
* * *
14855719 CGCACACCCGTTTCATGGGTCGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * *
14855747 GCATAGGGAGTTCATT-ACATGTCTAAGCCCCAG--CCAGACCGAGGGTTGTGGCAACGAGA-CC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGA-ACCGAGGGTTGCGGCAGCAAGATCG
* * * ** * * *
14855808 AGCAGCAAGCAAAGGGGGACCAGGTTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCA
63 A-CAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGA
*
14855873 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
14855906 GCATACAGAGTTCATTCCCAGTCTAAGATCTGATCGAACCAAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * *
14855971 GCACGCAGGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACT
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
* * *
14856036 CACACGCTCATTTTATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
**
14856064 GCATACGGAGTTCATTCCGTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
14856091 CATATGGAGT
Statistics
Matches: 270, Mismatches: 65, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 142 0.53
159 117 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAAGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:14856100 original size:26 final size:26
Alignment explanation
Indices: 14856064--14856116 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14856054 GTTGGCTTAG
14856064 GCATACGGAGTTCATTCCGT-GTCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
*
14856090 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14856116 G
1 G
14856117 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14856291 original size:26 final size:26
Alignment explanation
Indices: 14856261--14856313 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14856251 GTTGACTTAG
*
14856261 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
14856287 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
14856313 G
1 G
14856314 ATCGGTTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:14856470 original size:698 final size:693
Alignment explanation
Indices: 14854833--14856816 Score: 2490
Period size: 698 Copynumber: 2.8 Consensus size: 693
14854823 CGACCCGCTG
* *
14854833 AGCGCCCGCACACTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * ** * *
14854898 CGGAGTTTATTCCCAGTCTAAGATGGGATCAAATCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
66 CGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * * * * *
14854963 CAGGGTGGACTGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCGTCCGGCTGACCGCCCCCAC
131 CAGGGGGGACAGGGCCGATCCCCGACTTGTGCATTTTGCCTCTCCGT-CGGCTGAGCGCCCGCAC
* * * *
14855028 GCCTGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCCAGACCGA
195 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* * * * * *
14855093 GGGTTGTGGCAGTGGGACCGACAGTACACAGAGGGGGACTGGGCCGATCCTCTGCTTGTGCATTA
260 GGGTTGTGGCAGCGGGACCG-CAGCACACAGAGGGGGACCGGGCTGATCC-CCGCTTGCGCATTA
* * *
14855158 TACCTCTCCGGCC-AGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTT
323 TGCCTCTCCGGCCGA-CTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG-AGTT
* * * *
14855222 AATT-CCAGTCAAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGG
386 CATTCCCAGTCTAAGATC-GATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGG
* ** * * * *
14855286 GACCGGGCTGGTCCCCAACTTGCGTATTCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTCGTT
450 GACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACTCGCACGCTCGTT
* * * *
14855351 CTGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTATAAGCGTATGGAGTTCATTCCCAGTC
515 TTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTC
* * * * * *
14855416 TAAGATCGGATCGGATTGAGGGTTGCGGCAGTGGGACCAGCAGTAGGATCGATAGCACGTAAGAA
580 TAAGATCAGACCGGACTGAGGGTTGCCGCAGTAGGACCAGCAGCAGGATCGATAGCACGTAAGAA
* * * ** *
14855481 GGGACCAAGCCGATCCCCGACTTACGCATTCTGCCTCTCTGATCGGTTG
645 GGGACCAAGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGACTA
** * * *
14855530 AGCGCCCATACG-TCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATCCCCAGCCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * *
14855594 CGGAGATCATTCCCAGTCTAAGATCAGATTGAACCGAGGGTTACGGCAGCAGGATCGACAGCACG
66 CGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * *
14855659 CAGGGGGGACCGAGCCGATCCTC-AGCTTGTGCATTTTGCCTCTCCGGCTGGCTGAGCGCCCGCA
131 CAGGGGGGACAGGGCCGATCCCCGA-CTTGTGCATTTTGCCTCTCCGTC-GGCTGAGCGCCCGCA
* * *
14855723 CACCCGTTTCATGGGTCGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCAGACCG
194 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * * * *
14855788 AGGGTTGTGGCAACGAGACCAGCAGCA-AGCAAAGGGGGACCAGGTTGATCCCCGACTTGCGCAT
259 AGGGTTGTGGCAGCGGGACC-GCAGCACA-CAGAGGGGGACCGGGCTGATCCCCG-CTTGCGCAT
* *
14855852 TATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
321 TATGCCTCTCCGGCCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGT
* * *
14855917 TCATTCCCAGTCTAAGATCTGATCGAACCAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGG
385 TCATTCCCAGTCTAAGATC-GATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGG
* * *
14855982 GGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACTCACACGCTCAT
449 GGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACTCGCACGCTCGT
* * *
14856047 TTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAGCATATGGAGTTCATTCCTAGT
514 TTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGT
* * * *
14856112 CTAAGATCAGACCGGACTGAGGGTTGCCGTAGTAGGACCAGTAGCAGGATCGATAGCATG-CAGC
579 CTAAGATCAGACCGGACTGAGGGTTGCCGCAGTAGGACCAGCAGCAGGATCGATAGCACGTAAG-
* * ** * * * * *
14856176 GAGGGATCGGGTCGATCCCCGGCTTATGCCTTCTACCTCTCCGGCCGACTA
643 AAGGGACCAAGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGACTA
*
14856227 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * * * * *
14856292 TGAAGTTCATTCCCAGTCTAAGATCGGTTTGGACCGAGGGTTGCGACAGCAGGATTGGTAGCACG
66 CGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* ** * *
14856357 TAGGGGGGACAGGGCCGATCCCCGACTTACGCATTTTGCCTCTCCGATCGGCTGAGCACCCGCAT
131 CAGGGGGGACAGGGCCGATCCCCGACTTGTGCATTTTGCCTCTCCG-TCGGCTGAGCGCCCGCAC
* *
14856422 GCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
195 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* *
14856487 GGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGGGGACCGGGCTGATCCCCGTCTTGCGCATTA
260 GGGTTGTGGCAGCGGGAC-CGCAGCACACAGAGGGGGACCGGGCTGATCCCCG-CTTGCGCATTA
* * * *
14856552 TGCCTCTTCGGCCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTC
323 TGCCTCTCCGGCCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTC
* * * * *
14856617 ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATTGACAGCACGTAGGGGGG
387 ATTCCCAGTCTAAGATCGATCGA-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGG
* * * * * *
14856682 ACCGGGTCGATCCCCGGCTTAG-GCATTCTGCCTTTTCGACCGGCCGAGCGCTCGCACGCTCGTT
451 ACCGGGCCGGTCCCCGGCTT-GCGCATTCTGCCTCTCCGACCGGCTGAGCACTCGCACGCTCGTT
* * *
14856746 TCGTGCGTTGGCTTAGGCATAC-GATGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
515 TTGTGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGT
*
14856810 TTAAGAT
579 CTAAGAT
14856817 TTTGAGCCAC
Statistics
Matches: 1099, Mismatches: 171, Indels: 33
0.84 0.13 0.03
Matches are distributed among these distances:
695 4 0.00
696 319 0.29
697 280 0.25
698 492 0.45
699 4 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (693 bp):
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
CAGGGGGGACAGGGCCGATCCCCGACTTGTGCATTTTGCCTCTCCGTCGGCTGAGCGCCCGCACG
CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
GGTTGTGGCAGCGGGACCGCAGCACACAGAGGGGGACCGGGCTGATCCCCGCTTGCGCATTATGC
CTCTCCGGCCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAGTTCATTC
CCAGTCTAAGATCGATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGG
GCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACTCGCACGCTCGTTTTGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
CAGACCGGACTGAGGGTTGCCGCAGTAGGACCAGCAGCAGGATCGATAGCACGTAAGAAGGGACC
AAGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGACTA
Found at i:14856588 original size:159 final size:158
Alignment explanation
Indices: 14856323--14856789 Score: 469
Period size: 159 Copynumber: 2.9 Consensus size: 158
14856313 GATCGGTTTG
* * * ** ** * * *
14856323 GACCGAGGGTTGCGACAGCAGGATTGGTAGCACGTAGGGGGGACAGGGCCGATCCCCGACTTACG
1 GACCGAGGGTTACGGCAGCAGGACTGACAGCACACAGGGGGGACCGGGCTGATCCCCGACTTGCG
* * * * * * *
14856388 CATTTTGCCTCTCCGATCGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATACGG
66 CATTATGCCTCTTCGACCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* *
14856453 AGTTCATTCCATGTCTAAGCCCCAGCCG
131 AGTTCATTCCATGTCTAAGCCCCAACCA
** * * * *
14856481 GACCGAGGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGGGGACCGGGCTGATCCCCGTCTTGC
1 GACCGAGGGTTACGGCAGCAGGACTGACAGCACACAG-GGGGGACCGGGCTGATCCCCGACTTGC
* * *
14856546 GCATTATGCCTCTTCGGCCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGACTTATGCATACG
65 GCATTATGCCTCTTCGACCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
** *
14856611 GAGTTCATTCCCA-GTCTAAGATCGAACCA
130 GAGTTCATT-CCATGTCTAAGCCCCAACCA
* ** *
14856640 GACCGAGGGTTACGGCAGCAGGATTGACAGCACGTAGGGGGGACCGGG-TCGATCCCCGGCTTAG
1 GACCGAGGGTTACGGCAGCAGGACTGACAGCACACAGGGGGGACCGGGCT-GATCCCCGACTT-G
* * * * *
14856704 -GCATTCTGCCTTTTCGACCGGC-CGAGC-GCTCGCACGCTCGTTTCGTGCGTTGGCTTAGGCAT
64 CGCATTATGCCTCTTCGACCGGCTC-AGCACCT-GCACGCTCGTTTCATGGGTTGGCTTAGGCAT
14856766 AC-GATGTTCATTCCATGTCTAAGC
127 ACGGA-GTTCATTCCATGTCTAAGC
14856790 ATACGGAGTT
Statistics
Matches: 256, Mismatches: 45, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 9 0.04
158 116 0.45
159 128 0.50
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GACCGAGGGTTACGGCAGCAGGACTGACAGCACACAGGGGGGACCGGGCTGATCCCCGACTTGCG
CATTATGCCTCTTCGACCGGCTCAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAACCA
Found at i:14856766 original size:158 final size:156
Alignment explanation
Indices: 14856295--14856788 Score: 512
Period size: 158 Copynumber: 3.1 Consensus size: 156
14856285 AAGCATATGA
**** * *
14856295 AGTTCATTCCCA-GTCTAAGATCGGTTTGGACCGAGGGTTGCGACAGCAGGATTGGTAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTA
* * * * * * *
14856359 GGGGGGACAGGGCCGATCCCCGACTTACGCATTTTGCCTCTCCGATCGGCTGAGCACCCGCATGC
65 GGGGGGACCGGG-CGATCCCCGACTTAGGCATTATGCCTCTTCGACCGGCCGAGCA-CCGCACGC
*
14856424 CCGTTTCATGGGTTGGCTTAGGCATACGG
128 TCGTTTCATGGGTTGGCTTAGGCATACGG
** * * * * * * **
14856453 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACTGGCAGCACACAG
1 AGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAG
* *
14856518 AGGGGGACCGGGCTGATCCCCGTCTT-GCGCATTATGCCTCTTCGGCCGGCTC-AGCACCTGCAC
66 -GGGGGACCGGGC-GATCCCCGACTTAG-GCATTATGCCTCTTCGACCGGC-CGAGCACC-GCAC
* *
14856581 GCTCGTTTCATGGGTTGACTTATGCATACGG
126 GCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * *
14856612 AGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATTGACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTA
* * * *
14856676 GGGGGGACCGGGTCGATCCCCGGCTTAGGCATTCTGCCTTTTCGACCGGCCGAGCGCTCGCACGC
65 GGGGGGACCGGG-CGATCCCCGACTTAGGCATTATGCCTCTTCGACCGGCCGAGCAC-CGCACGC
* *
14856741 TCGTTTCGTGCGTTGGCTTAGGCATAC-G
128 TCGTTTCATGGGTTGGCTTAGGCATACGG
14856769 ATGTTCATTCCATGTCTAAG
1 A-GTTCATTCCATGTCTAAG
14856789 CATACGGAGT
Statistics
Matches: 274, Mismatches: 49, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 9 0.03
158 137 0.50
159 125 0.46
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAG
GGGGGACCGGGCGATCCCCGACTTAGGCATTATGCCTCTTCGACCGGCCGAGCACCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGG
Found at i:14858014 original size:26 final size:26
Alignment explanation
Indices: 14857985--14858037 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14857975 GTTGGCTTAG
14857985 GCATACGA-AGTTCATT-CCATGTCTAA
1 GCATA-GAGAGTTCATTCCCA-GTCTAA
14858011 GCATAGAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATTCCCAGTCTAA
14858037 G
1 G
14858038 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAGAGAGTTCATTCCCAGTCTAA
Found at i:14858367 original size:171 final size:171
Alignment explanation
Indices: 14858045--14858367 Score: 364
Period size: 171 Copynumber: 1.9 Consensus size: 171
14858035 AAGATCAGAT
*
14858045 CAGACCAAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAGCAGCACGTAAGGAGGGACCGGGCC
1 CAGACCAAGGGTTACGGCAGCAGGACCAGCAGCAGGATCAGCAGCACGTAAGGAGGGACCGGGCC
* * * *
14858110 GATCCCCGACATACGCATTCTGCCTCTCCGGTCGGCTAAGCACCTGTACGCTCAATTCGTGGGTT
66 GATCCCCGACATACGCATTATGCCTATCCGGTCGGCTAAGCACCCGCACGCTCAATTCGTGGGTT
* *
14858175 GGCTTAGGTATACGAAGTTCATTCCATATCTAGGCCCCAGC
131 GACTTAGGCATACGAAGTTCATTCCATATCTAGGCCCCAGC
* ** * ** *
14858216 CAGACCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATC-GACAGCATGTAGAGG-GGGACCGGG
1 CAGACCAAGGGTTACGGCAGCAGGACCAGCAGCAGGATCAG-CAGCACGTA-AGGAGGGACCGGG
** * * * * * ** *
14858279 TTGATCCCCGACTTATGCATTATGCCTATCCGG-CTGGGTGAGCGCCCGCACGCTCGTTTTGTGG
64 CCGATCCCCGACATACGCATTATGCCTATCCGGTC-GGCTAAGCACCCGCACGCTCAATTCGTGG
* *
14858343 GTTGACTTAGGCATATGGAGTTCAT
128 GTTGACTTAGGCATACGAAGTTCAT
14858368 CCCCAGTCTA
Statistics
Matches: 123, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
170 2 0.02
171 118 0.96
172 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (171 bp):
CAGACCAAGGGTTACGGCAGCAGGACCAGCAGCAGGATCAGCAGCACGTAAGGAGGGACCGGGCC
GATCCCCGACATACGCATTATGCCTATCCGGTCGGCTAAGCACCCGCACGCTCAATTCGTGGGTT
GACTTAGGCATACGAAGTTCATTCCATATCTAGGCCCCAGC
Found at i:14858389 original size:26 final size:26
Alignment explanation
Indices: 14858353--14858405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14858343 GTTGACTTAG
*
14858353 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
*
14858379 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
14858405 G
1 G
14858406 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:14858889 original size:26 final size:26
Alignment explanation
Indices: 14858855--14858907 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14858845 GTTGTCTTAG
14858855 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
14858881 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
14858907 G
1 G
14858908 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:14859627 original size:26 final size:26
Alignment explanation
Indices: 14859591--14859643 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14859581 GTTAACTTAG
*
14859591 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
14859617 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
14859643 G
1 G
14859644 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:14860532 original size:26 final size:26
Alignment explanation
Indices: 14860495--14860547 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14860485 GTTGACTTAG
14860495 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
14860521 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
14860547 G
1 G
14860548 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14860535 original size:904 final size:912
Alignment explanation
Indices: 14858697--14860706 Score: 2956
Period size: 904 Copynumber: 2.2 Consensus size: 912
14858687 GTTGACTTAT
* * * * * * * * * *
14858697 GCATACAGAGTTCATTCCTAGTGTAAGACCGGATCAGATCAAGGGTTATGGTAGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGTGGTAGCAAGATCGACA
* * *
14858762 GCACGTAG-GGGGGACCGGGCCGATGCCC-AGCTTGAGCATTCTGCCTCTCCGACCGGCTGAGCG
66 GCACGCAGAGGGGGACC-GGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
14858825 CCTGTACGCT-AGTTTCATGGGTTGTCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGG
129 CCCGCACGCTCA-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
14858889 AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTAC
193 AGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTAC
*
14858954 CGCATATTTTTCACCCGGGGCACCATCGTCAGAGCATCGTCGGAGCATAGCCGGAGAGCCTAACC
258 CGCATATTTTTCACCCGGGGCACCATCCTCAGAGCA-C-TC-G-G-ATA--CGGAGAGCCTAACC
* * * * *
14859019 GATGACATTGTGGGTTCTGGCGATTGGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGT
316 GA-GACATTGGGGGTTCCGACGATTGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
14859084 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
380 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
14859149 TAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
445 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
14859214 TTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAATTTTTAGCTGAATTGTTTTTGAGCATGC
510 TTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAAGTTTTAGCTGAATTGTTTTTGAGCATGC
* *
14859279 CAAGAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAA
575 CAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACGCTTTCTAAAAAAATTTTAA
* *
14859344 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTTCCACG
640 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACG
*
14859409 AAACTTCACATGAAGGCTTAGGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCA
705 AAACTTCACATGAAGGCCTAGGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCA
* * *
14859474 TGGCATAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCGACTTGCGCATCC
770 TGGCAGAAATATAAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCGACTTACGCATCC
* **
14859539 TGCCTCTTTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTC
835 TACCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTC
14859604 ATCCCCAGTCTAA
900 ATCCCCAGTCTAA
* *
14859617 GCATACAGAGTTCATTCCCAATCTAAGATTGGA-CTGGACCGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACAGAGTTCATTCCCAATCTAAGATCGAATC-GGACCGAGGGTTGTGGTAGCAAGATCGAC
14859681 AGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCACGCAGAGGGGGACC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
14859746 CCCGCACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
129 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * *
14859811 GTTCATTCCTAGTCTATGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCT
194 GTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTACC
* * ** * *
14859876 GTATTTTTTTTGCTCGGGGCACCATCACT-AGAGCA-TC-G-T-CGGAGAGCCTAGCCG-G-CAT
259 GCATATTTTTCACCCGGGGCACCATC-CTCAGAGCACTCGGATACGGAGAGCCTAACCGAGACAT
* *
14859934 TGGGGGTTCCGACGATT-AGGGGGCCAGGGTGGTGTGCGCACATGATGTGGGATGGGTGCTGGTA
323 TGGGGGTTCCGACGATTGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
**
14859998 CTTGGCCCTTATATTGGTGCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
387 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
14860063 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTC
452 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
14860128 AAAGGGTCACAAAATCTTCTCCACTTCG-AGTTTTAGCTGGATT-TTTTTGTGCATGCCAACAAA
517 AAACGATCACAAAATCTTCTCCACTTCGAAGTTTTAGCTGAATTGTTTTTGAGCATGCCAACAAA
14860191 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACGCTTTCTAAAAAAA-TTTAAAAAAATC
582 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACGCTTTCTAAAAAAATTTTAAAAAAATC
* *
14860255 CCGAGCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTC
647 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTC
* * * *
14860320 ACATGAAGGCCTATGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGGCAGA
712 ACATGAAGGCCTAGGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCATGGCAGA
* * * *
14860385 AATATAAAGATGTGCTTGAACCCACCTACCATCCGTTCGATCCCCGGCTTACGCATCTTACCTCT
777 AATATAAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCGACTTACGCATCCTACCTCT
* * *
14860450 CCGGTCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTA
842 CCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCA
14860515 GTCTAA
907 GTCTAA
* * * * *
14860521 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGTAGCAGCAGGATCGAC
1 GCATACAG-AGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGTGGTAGCAAGATCGAC
* * * * * * * *
14860585 AGCACACAGA-GGGGACCGGACTGATCGCCGGCTTGCGCATTCTCCCTCTTCGATCGGCTGAGTG
65 AGCACGCAGAGGGGGACCGG-CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * *
14860649 CCCCCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
14860707 CCTAGCCGAA
Statistics
Matches: 991, Mismatches: 90, Indels: 35
0.89 0.08 0.03
Matches are distributed among these distances:
902 2 0.00
903 99 0.10
904 318 0.32
905 70 0.07
906 19 0.02
907 204 0.21
908 1 0.00
910 14 0.01
913 1 0.00
915 1 0.00
918 2 0.00
919 1 0.00
920 60 0.06
921 196 0.20
922 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (912 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTGTGGTAGCAAGATCGACA
GCACGCAGAGGGGGACCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTACCGC
ATATTTTTCACCCGGGGCACCATCCTCAGAGCACTCGGATACGGAGAGCCTAACCGAGACATTGG
GGGTTCCGACGATTGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAC
GATCACAAAATCTTCTCCACTTCGAAGTTTTAGCTGAATTGTTTTTGAGCATGCCAACAAAAATA
CAAGGATCACCTCTACCAAATTTGGGGACAAAACGCTTTCTAAAAAAATTTTAAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACAT
GAAGGCCTAGGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCATGGCAGAAATA
TAAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCGACTTACGCATCCTACCTCTCCGG
TCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCT
AA
Found at i:14861020 original size:158 final size:157
Alignment explanation
Indices: 14860521--14861021 Score: 468
Period size: 158 Copynumber: 3.2 Consensus size: 157
14860511 CCTAGTCTAA
* * *
14860521 GCATAC-GAAGTTCATTCCCA-GTCTAAGATCGAATCGGATCGAGGGTTGTAGCAGCAGGATCGA
1 GCATACAG-AGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
14860584 CAGCACACAGAGGGGACCGGACTGATCGCCGGCTTGCGCATTCTCCCTCTTCGATCGGCTGAGTG
64 CAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTC-TCGATCGGCTGAGCG
* *
14860649 CCCCCACGCCCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
** ** * * * ** * **
14860679 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGCAGTGGGACCGGTA
1 GCATACAGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
14860744 GCACGCAGAGGGGATCGGG-TCGATCCTCGACTTGCTCATTATGCCTCTCTAGTCGGCTCAGCGC
66 GCACGCAGAGGGGACCGGGCT-GATCCCCGACTTGCGCATTATGCCTCTCGA-TCGGCTGAGCGC
* * * * *
14860808 CCGCATGCTCGTTTCATCGATTGACTTAG
129 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * * * *
14860837 GCATACAGAGTTAATGCCAAATCTAAGATCGGACCGGACCAAAGGTTGCGGCAGCAGGATTGACA
1 GCATACAGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
14860902 GCATGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTTTGCCTCTCCGATCGGTTGAGCGCC
66 GCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCT-CGATCGGCTGAGCGCC
* * * *
14860967 CGTACACTCTTTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
14860995 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
14861022 CATACAGAGT
Statistics
Matches: 262, Mismatches: 75, Indels: 12
0.75 0.21 0.03
Matches are distributed among these distances:
157 7 0.03
158 251 0.96
159 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCGATCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:14861024 original size:26 final size:26
Alignment explanation
Indices: 14860995--14861047 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14860985 GTTGGCTTAG
14860995 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
14861021 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14861047 G
1 G
14861048 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14861155 original size:184 final size:184
Alignment explanation
Indices: 14860837--14861206 Score: 524
Period size: 184 Copynumber: 2.0 Consensus size: 184
14860827 ATTGACTTAG
* * *
14860837 GCATACAGAGTTAATGCCAAATCTAAGATCGGACCGGACCAAAGGTTGCGGCAGCAGGATTGACA
1 GCATACAGAGTTAATGCCAAATCTAAGATCAGACCGGACCAAAGGTTGCAGCAGCAGGATCGACA
* ** * * *
14860902 GCATGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTTTGCCTCTCCGATCGGTTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTTTGCCTCTCCGATCAGCTGAGCACC
*
14860967 CGTACACTCTTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CGTACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * * * * * *
14861021 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATCGATA
1 GCATACAGAGTTAATGCCAAATCTAAGATCAGACCGGACCAAAGGTTGCAGCAGCAGGATCGACA
* * *
14861086 GCACGCAGGGGGGACCGGGCCAATCCTCGACTTGCGCATTTTGCCTCTTCGGTCAGCTGAGCACC
66 GCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTTTGCCTCTCCGATCAGCTGAGCACC
* *
14861151 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGTACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
14861205 GC
1 GC
14861207 CACAGCCGGA
Statistics
Matches: 162, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 162 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTAATGCCAAATCTAAGATCAGACCGGACCAAAGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTTTGCCTCTCCGATCAGCTGAGCACC
CGTACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:14861850 original size:158 final size:158
Alignment explanation
Indices: 14861393--14861890 Score: 504
Period size: 158 Copynumber: 3.1 Consensus size: 158
14861383 GTCTAAGCAA
* * *
14861393 ACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGCAGGATCGGCAGCA
1 ACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAACA
* * * * * * *
14861457 TGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGG-TCGGTTGAGCACCCG
65 CGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGCGCCCG
* *
14861521 CATG-TCTATTTCATGGGTTGGCTTAGGCAT
129 CACGCTC-ATTTCGTGGGTTGGCTTAGGCAT
* * ** * * * *
14861551 ATGGAGTTCATTCCATGTCTAAGCCCTA-ACCGGACCAAGTGTTGTGGCAGCGGGACCGGCAACA
1 ACGAAGTTCATTCCATGTCTAAGATC-AGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAACA
* * * * ** ** * * *
14861615 CGCAGAGGGGGACTGGGTCGATTCTCGGATTGCGCATTATGCCTCTTTGGCCAGCTCAGCGTCGG
65 CGCAG-GGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCG
* * *
14861680 CACGCTCGTTTCGTGGGTTGACTTATGCAT
129 CACGCTCATTTCGTGGGTTGGCTTAGGCAT
* * * * * *
14861710 ACGAAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGAAAGATTGACAACA
1 ACGAAGTTCATTCCAT-GTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAACA
* * *
14861774 CGTAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGTGCCCGC
65 CGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGC
14861839 ACGCTCATTTCGTGGGTTGGCTTAGGCAT
130 ACGCTCATTTCGTGGGTTGGCTTAGGCAT
14861868 AC-AGAGTTCATTCCATGTCTAAG
1 ACGA-AGTTCATTCCATGTCTAAG
14861891 CATACGGAGT
Statistics
Matches: 266, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 146 0.55
159 114 0.43
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
ACGAAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAACAC
GCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCA
CGCTCATTTCGTGGGTTGGCTTAGGCAT
Found at i:14861900 original size:26 final size:26
Alignment explanation
Indices: 14861864--14861916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14861854 GTTGGCTTAG
14861864 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
14861890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14861916 G
1 G
14861917 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14868803 original size:26 final size:26
Alignment explanation
Indices: 14868767--14868819 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14868757 GTTGGCTTAG
14868767 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
14868793 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
14868819 G
1 G
14868820 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:14869001 original size:26 final size:26
Alignment explanation
Indices: 14868964--14869015 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14868954 TTGACTTAGC
14868964 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* **
14868990 CATACGGGGTTCATTTCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
14869016 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:14869032 original size:196 final size:195
Alignment explanation
Indices: 14868680--14869174 Score: 529
Period size: 196 Copynumber: 2.6 Consensus size: 195
14868670 CGATAGCACA
*
14868680 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCGCACC
1 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCCCCGCACC
* * * *
14868745 CTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
66 CTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTC
* *
14868810 TCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGACTAGCAGTAGGATTGGCAGCATG
131 TCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGACTAGCAGTAGGATTGGCAGCATG
* * *
14868875 CAGGGGGGATCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCC-AGTCGGTTGAGTGCCCCGC
1 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTGA--GCCCCGC
** * * *
14868938 ATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATCCCCA-GTCTAAGCATACGGGGTTC
63 ACCCTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCAT-CCCATGTCTAAGCATACAGAGTTC
* *
14869002 ATT-TCCAGTCTAAGATCGAACTGGACCGAGGGTT--G-C----GG--T---AGTAGGATTGGTA
127 ATTCT-CAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGACTAGCAGTAGGATTGGCA
*
14869054 GCACG
191 GCATG
* * * * ** *
14869059 CAGCGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTAC
1 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC-CCCGCAC
* * * ** *
14869124 GCC-CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 -CCTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCATGTCTAAGC
14869175 CCTAGTCGGA
Statistics
Matches: 257, Mismatches: 33, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
183 5 0.02
184 77 0.30
185 30 0.12
187 1 0.00
189 2 0.01
193 2 0.01
194 33 0.13
195 18 0.07
196 86 0.33
197 3 0.01
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (195 bp):
CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCCCCGCACC
CTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTC
TCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGACTAGCAGTAGGATTGGCAGCATG
Found at i:14869277 original size:159 final size:159
Alignment explanation
Indices: 14869063--14869845 Score: 409
Period size: 159 Copynumber: 4.7 Consensus size: 159
14869053 AGCACGCAGC
* * * * * * *
14869063 GGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCCC
1 GGGGATCGGGTCGATCCTCGGCCTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTC
* * *
14869128 GTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGT
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGT
14869193 TGTGGTAGCGGAACTGGCAGCATGCAGAG
131 TGTGGTAGCGGAACTGGCAGCATGCAGAG
* * * * * *
14869222 TGGGATCGGGTCGATCCTTGGCCTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTT
1 GGGGATCGGGTCGATCCTCGGCCTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTC
* ** * * *
14869287 GTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCA-GTCTAAG-ATTGGACCGGACCGAGG
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCTAG-TCGGACTGAGG
* * *
14869350 GTTGCGACAGTAGGACTAGCAGCAGGATTGGCAGCATGCAGGG
129 GTT------GT-GG--TAGC-G--GAACTGGCAGCATGCAGAG
* * * * * *
14869393 GGGGATCGGGTCGATCC-CGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCATGCTC
1 GGGGATCGGGTCGATCCTCGGCCTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTC
* * * * * * *
14869457 GTTTCATGGGTTGACTTAGCCATATGGAGTTCATCCCCA-GTCTAAG-CATACG-GGGTTCATTT
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCCTA-GTCGG---A-CT
* ** * * * * * * ** *
14869519 CCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGTAGCAGGATTG
125 -GAGGGT-TG-TGGTAGCGGAAC--TGGCAGC-AT-GCA-GA--G
* * * * * *** * * *
14869564 GTAGCACGCAGCGGG--GAT-C-AGGCCGATCCCCAGCTTACGTATTTTACCTCTCCGGCTGGCT
1 G--G---GGATCGGGTCGATCCTCGGCC--TGCGCA--TTA--T-GCCT--CTC-CGGCCGG-CT
* * * * *
14869625 GAGCGCCCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
50 GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* *
14869690 TAGTCGGACTGAGGGTTGTGGTAGCGGAACTGACAGCACGCAGAG
115 TAGTCGGACTGAGGGTTGTGGTAGCGGAACTGGCAGCATGCAGAG
* * * *
14869735 GGGGATCGGGTCGATCCTTGGCCTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTC
1 GGGGATCGGGTCGATCCTCGGCCTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTC
*
14869800 GTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
14869846 ATTGGACCGG
Statistics
Matches: 446, Mismatches: 124, Indels: 108
0.66 0.18 0.16
Matches are distributed among these distances:
158 3 0.01
159 158 0.35
160 6 0.01
161 2 0.00
163 1 0.00
164 2 0.00
165 2 0.00
166 16 0.04
167 3 0.01
168 14 0.03
169 8 0.02
170 81 0.18
171 38 0.09
172 1 0.00
173 6 0.01
174 9 0.02
175 4 0.01
176 9 0.02
177 2 0.00
178 8 0.02
179 2 0.00
180 4 0.01
181 1 0.00
182 4 0.01
183 7 0.02
184 50 0.11
185 5 0.01
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (159 bp):
GGGGATCGGGTCGATCCTCGGCCTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGTACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGT
TGTGGTAGCGGAACTGGCAGCATGCAGAG
Found at i:14869767 original size:513 final size:513
Alignment explanation
Indices: 14868793--14870033 Score: 1954
Period size: 513 Copynumber: 2.4 Consensus size: 513
14868783 CCATGTCTAA
*
14868793 GCATACAGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGACTAGCA
1 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGACTAGCA
* * *
14868858 GTAGGATTGGCAGCATGCA-GGGGGGATCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCAGT
66 GCAGGATTGGCAGCATGCAGGGGGGGATCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGGT
14868922 CGGTTGAGTGCCCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATCCCCAGTCT
131 CGGTTGAGTG-CCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATCCCCAGTCT
* * *
14868987 AAGCATACGGGGTTCATTTCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGTAGGATTGG
195 AAGCATACGGGGTTCATTTCCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGTAGCAGGATTGG
* *
14869052 TAGCACGCAGCGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCG
260 TAGCACGCAGCGGGGATCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCG
*
14869117 CCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTC
325 CCCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTC
* * *
14869182 GGACTGAGGGTTGTGGTAGCGGAACTGGCAGCATGCAGAGTGGGATCGGGTCGATCCTTGGCCTG
390 GGACTGAGGGTTGTGGTAGCGGAACTGACAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCCTG
*
14869247 CGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAT
455 CGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
14869306 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGACTAGCA
1 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGACTAGCA
*
14869371 GCAGGATTGGCAGCATGCAGGGGGGGATCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGGC
66 GCAGGATTGGCAGCATGCAGGGGGGGATCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGGT
* * *
14869436 CGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGCCATATGGAGTTCATCCCCAGTCTA
131 CGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTA
14869501 AGCATACGGGGTTCATTTCCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGTAGCAGGATTGGT
196 AGCATACGGGGTTCATTTCCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGTAGCAGGATTGGT
* * *
14869566 AGCACGCAGCGGGGATCAGGCCGATCCCCAGCTTACGTATTTTACCTCTCCGGCTGGCTGAGCGC
261 AGCACGCAGCGGGGATCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGC
14869631 CCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
326 CCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
14869696 GACTGAGGGTTGTGGTAGCGGAACTGACAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCCTGC
391 GACTGAGGGTTGTGGTAGCGGAACTGACAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCCTGC
**
14869761 GCATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
456 GCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
* * *
14869819 GCATACGGAGTTCATTC-CTAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGA-T---
1 GCATACGGAGTTCATTCTC-AGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGACTAGC
* * * * * * *
14869879 --C--GATAGG-A-CA--CAGGAGAGGACCGGGCCGATCCCCGACTTGCGCATTCTGCATCTTCG
65 AGCAGGATTGGCAGCATGCAGGGGGGGATCGGGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCG
* * * * * * *
14869936 ATCGGTTGAGCGTCCGCATGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
129 GTCGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATCCCCA-GT
** *
14870000 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATT
193 CTAAGCATACGGGGTTCATTTCCAGTCTAAGATT
14870034 TTGAGCCAAG
Statistics
Matches: 677, Mismatches: 47, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
501 19 0.03
502 104 0.15
503 2 0.00
504 1 0.00
505 5 0.01
507 1 0.00
512 2 0.00
513 492 0.73
514 51 0.08
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (513 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGACTAGCA
GCAGGATTGGCAGCATGCAGGGGGGGATCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGGT
CGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTA
AGCATACGGGGTTCATTTCCAGTCTAAGATTGAACCGGACCGAGGGTTGCGGTAGCAGGATTGGT
AGCACGCAGCGGGGATCAGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGC
CCGTACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
GACTGAGGGTTGTGGTAGCGGAACTGACAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCCTGC
GCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
Found at i:14869857 original size:159 final size:159
Alignment explanation
Indices: 14869502--14870004 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 159
14869492 CCCAGTCTAA
* * * *
14869502 GCATACGGGGTTCATTTCCA-GTCTAAGATTGAACCGGACCGAGGGTTGCGGTAGCAGG-ATTGG
1 GCATACGGAGTTCA-TTCCATGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGAACTGA
* * * * * * * *
14869565 TAGCACGCAGCGGGGATCAGGCCGATCCCCAGCTTACGTATTTTACCTCTCCGG-CTGGCTGAGC
65 TAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC-GGCTGAGC
* * *
14869629 GCCCGTACGCCCATTTTGTGGGTTGGCTTAG
129 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
14869660 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACTGAGGGTTGTGGTAGC-GGAACTGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTGGACCGGACCGAGGGTTGCGGTAGCAGGAACTGA
* * ** * *
14869723 CAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCCTGCGCATTATGCCTCTTCGGTCGGCTCAGC
65 TAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGC
* *
14869788 GCCCGTACGCTCGTTTCGTGGGTTGACTTAT
129 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * *
14869819 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATC-GA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGAACTGA
* * * * * * * * *
14869882 TAGGACACAGGAGAGGACCGGGCCGATCCCCGACTTGCGCATTCTGCATCTTCGATCGGTTGAGC
65 TAGCACGCAGG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGC
* * * *
14869947 GTCCGCATGCTCGTTTCGTTGGTTGGCTTAG
129 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
14869978 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
14870005 CATACGAAGT
Statistics
Matches: 274, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 7 0.03
158 54 0.20
159 207 0.76
160 6 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGAACTGAT
AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGC
CCGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:14870007 original size:26 final size:26
Alignment explanation
Indices: 14869978--14870030 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14869968 GTTGGCTTAG
*
14869978 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
14870004 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14870030 G
1 G
14870031 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14871066 original size:159 final size:156
Alignment explanation
Indices: 14870738--14871238 Score: 479
Period size: 160 Copynumber: 3.2 Consensus size: 156
14870728 AATCTAAGCG
* * *
14870738 TACGGAGTTCATTCC-TAGTGTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCTG-CAG
1 TACGGAGTTCATTCCAT-GTCTAAGATCAG-TCGGACCGAGGGTTGCGGCAGCAGGA-CCGACAG
* * * * *
14870801 CACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCAATCTGCCTCTCCGGCCGGCTGAGCGCCC
63 CACGCAAGGAGGATCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCC-GCCGACTGAGCGCCC
* * * * *
14870866 GAATGCCCATTTCATGGGTTGGCTTAGGTA
127 GGACGCTCATTTCATGGGTTGACTTAGGCA
* ** * * *
14870896 TAGGGCTTTCATTCCATGTCTAAGCAGCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
1 TACGGAGTTCATTCCATGTCTAAG-ATCAGTCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCA
* * * * * *
14870961 CGCACAGGAGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAGTGCCCG
65 CGCA-AGGAGGATCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCC-GCCGACTGAGCGCCCG
** *
14871026 GACGCTCATTTTGTGGGTTGACCTAGGCA
128 GACGCTCATTTCATGGGTTGACTTAGGCA
** * * * * * *
14871055 TACGGAGTTCATTCCCCA-GTCTAAGATCAAACCAGACTGAGGGTTGCAGTAGTAGGATCGACAG
1 TACGGAGTTCATT--CCATGTCTAAGATC-AGTCGGACCGAGGGTTGCGGCAGCAGGACCGACAG
* * * *
14871119 CACG-TAGGAAGGAATCGGGCCGATCCCCGGCTTGCACAATCTGCCTCTCCGATCGACTGAACGC
63 CACGCAAGG-AGG-ATCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCG-CCGACTGAGCGC
*
14871183 TCGGACGCTCATTTCATGGGTTGACTTAGGCA
125 CCGGACGCTCATTTCATGGGTTGACTTAGGCA
*
14871215 TACGGAGTTCATTCCATGGCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
14871239 CATACAGAGT
Statistics
Matches: 274, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 56 0.20
159 96 0.35
160 117 0.43
161 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
TACGGAGTTCATTCCATGTCTAAGATCAGTCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCAC
GCAAGGAGGATCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCGCCGACTGAGCGCCCGGAC
GCTCATTTCATGGGTTGACTTAGGCA
Found at i:14871584 original size:171 final size:171
Alignment explanation
Indices: 14871395--14871777 Score: 464
Period size: 171 Copynumber: 2.2 Consensus size: 171
14871385 GTTCGTTTTG
* **
14871395 TGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGC
* * * * * * * * *
14871460 AGCAAGACCGACAGCGGGATCGGCCGCACGTAGAGGGGGGCCGGGCCGATCCTCGGCTTACGCAT
66 AGCAAGACCAACAGCGAGATCAGCAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTACGCAA
* * * * *
14871525 TCCACCTC-CCTGATCTATTAAGCACCCGCATGCTCATTTCA
131 TACACCTCTCC-GACCGACTAAGCACCCGCACGCTCATTTCA
* * *
14871566 TGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGC
* * * * *
14871631 AGTAGGACCAACAGCGAGATCAGCAGCACGCAGAGGGAGACTGGGCTGATCCCCGGCTTTCGCAA
66 AGCAAGACCAACAGCGAGATCAGCAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTACGCAA
* * * *
14871696 TACGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCA
131 TACACCTCTCCGACCGACTAAGCACCCGCACGCTCATTTCA
*
14871737 TGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAAGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
14871778 ATACGGAGTT
Statistics
Matches: 180, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
170 4 0.02
171 174 0.97
172 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (171 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGC
AGCAAGACCAACAGCGAGATCAGCAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTACGCAA
TACACCTCTCCGACCGACTAAGCACCCGCACGCTCATTTCA
Found at i:14871780 original size:26 final size:26
Alignment explanation
Indices: 14871750--14871802 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14871740 GTTGACTTAG
14871750 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
14871776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14871802 G
1 G
14871803 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14871981 original size:526 final size:500
Alignment explanation
Indices: 14870669--14872304 Score: 1386
Period size: 526 Copynumber: 3.2 Consensus size: 500
14870659 TCTTTCTGGT
* * * *
14870669 CGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATCCCCAATCTA
1 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTA
* * * * * * **
14870734 AGCGTACGGAGTTCATTCCTAGTGTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCTGC
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAAC
* * * * * * * *
14870799 AGCACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCAATCTGCCTCTCCGGCCGGCTGAGCGC
130 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* * ** *
14870864 CCGA-ATGCCCATTTCATGGGTTGGCTTAGGTATAGGGCTTTCATTCCATGTCTAAGCAGCAGTC
195 CC-ACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CCAGTC
*
14870928 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCACAGGAGGACCGAGCCGATCCCCGGCTTG
258 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCACAGGAGGACCGAGCCGATCCCCGGCTTA
** * ** * **
14870993 CGCATTATGCCTCTCCAGCCGACTCAGTGCCCGGACGCTCATTTTGTGGGTTGACCTAGGCATAC
323 CGCATTACACCTCTCCAGCCGACTAAGCACCCGCACGCTCATTTCATGGGTTGACCTAGGCATAC
* * * *
14871058 GGAGTTCATTCCCCAGTCTAAGATCAAACCAGACTGAGGGTTGCAGTAGTAGGATCGACAGCACG
388 GGAGTTCATT-CCCAGTCTAAGACCAAACCAGACCGAGGGTTGCAGTAGTAGGACCAACAGCACG
* *
14871123 TAGGAAGGAATCGGGCCGATCCCCGGCTTGCACAATCTGCCTCTCCGAT
452 CAGGAAGGAATCGGGCCGATCCCCGGCTTGCACAATCTGCCTCTCCGAC
* * * * * * * *
14871172 CGACTGAACGCTCGGACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGGCTA
1 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTA
* *
14871237 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAGGACCAGG
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T----T-GC-GG--CA-G
* * * * *
14871302 AACAGGATCAACAGCACGCAGGGGGGACCGAGTCAATCCCTGGCTTACGCATTCTGCCTTTTCGA
120 --CAGGATCAACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGG
* ** ** * ** ***
14871367 TCAGCTGAGCGCCTGCACGTTCGTTTTGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCT
183 TCGGCTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* ** *
14871432 AAGCCCCAGTCGGACCAAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGGCCGCACGTAGAGGG
248 AAG-CCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC---A-----CGCAC----AGGA
* * * * * * * * *
14871497 GGGCCGGGCCGATCCTCGGCTTACGCATTCCACCTC-CCTGATCTATTAAGCACCCGCATGCTCA
300 GGACCGAGCCGATCCCCGGCTTACGCATTACACCTCTCCAG-CCGACTAAGCACCCGCACGCTCA
* * ** *
14871561 TTTCATGGGTTG-CCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGG
364 TTTCATGGGTTGACC-TAGGCATACGGAGTTCATTCCCA-GTCTAAGACCAAACCAGACCGAGGG
** *
14871624 TTGTGGTAGTAGGACCAACAGCGAGATCAGCAGCACGCAGAGGGAGA-CTGGGCTGATCCCCGGC
427 TTGCAGTAGTAGGACCAACAGC---A-C-GCAG---G-A-A-GGA-ATC-GGGCCGATCCCCGGC
* *
14871688 TTTCGCAATAC-GCCTCTCCGAC
479 TTGCACAAT-CTGCCTCTCCGAC
14871710 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
1 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTA
*
14871775 AGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGGCAGTAGGATCAA
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCAA
* * * *
14871839 TAGCACGCAGTGGGGACCGAGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGGTCGGCTGAGCA
129 CAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCG
* *
14871904 CCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCC
194 CCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGTC
* * * * *
14871969 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGCG-GGATCGGGTCGATCCCCGGCTT
258 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCACAG-GAGGACCGAGCCGATCCCCGGCTT
* ** * * * * * * * **
14872033 GCGCATTATGCCTCTTCGGCAGGCTCAA-CGCCCGTATC-CTCATTTCATGGGTTGACTTTTGCA
322 ACGCATTACACCTCTCCAGCCGACT-AAGCACCCGCA-CGCTCATTTCATGGGTTGACCTAGGCA
* * * * * ** ** * * ***
14872096 TATGAAGTTCATTCCCAGTCTAAGATCAAATCGGATTGAGGGTTGTGGCAGCAGGATTGACAGCA
385 TACGGAGTTCATTCCCAGTCTAAGACCAAACCAGACCGAGGGTTGCAGTAGTAGGACCAACAGCA
** * * ** * ** * * *
14872161 CATAGG-GGGGATCGGGCTAATCCCCGACTTGTGCATTCTGCCTTTTCGAC
450 CGCAGGAAGGAATCGGGCCGATCCCCGGCTTGCACAATCTGCCTCTCCGAC
** * ** * *
14872211 CGATTGAGCACCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTA
*
14872276 AGCATACGGAGTTCATTCCTAGTCTAAGA
65 AGCATACGGAGTTCATTCCCAGTCTAAGA
14872305 GTTTGAGCCA
Statistics
Matches: 897, Mismatches: 180, Indels: 114
0.75 0.15 0.10
Matches are distributed among these distances:
500 2 0.00
501 113 0.13
502 6 0.01
503 88 0.10
504 1 0.00
506 1 0.00
508 1 0.00
509 4 0.00
510 2 0.00
511 1 0.00
512 2 0.00
513 1 0.00
514 104 0.12
515 143 0.16
516 1 0.00
518 5 0.01
523 6 0.01
525 6 0.01
526 181 0.20
527 76 0.08
528 1 0.00
529 3 0.00
530 1 0.00
531 5 0.01
532 2 0.00
533 1 0.00
534 1 0.00
535 1 0.00
536 1 0.00
537 6 0.01
538 129 0.14
539 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (500 bp):
CGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAACA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
CACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
CCGAGGGTTGTGGCAGCGGGACCGACAGCACGCACAGGAGGACCGAGCCGATCCCCGGCTTACGC
ATTACACCTCTCCAGCCGACTAAGCACCCGCACGCTCATTTCATGGGTTGACCTAGGCATACGGA
GTTCATTCCCAGTCTAAGACCAAACCAGACCGAGGGTTGCAGTAGTAGGACCAACAGCACGCAGG
AAGGAATCGGGCCGATCCCCGGCTTGCACAATCTGCCTCTCCGAC
Found at i:14872097 original size:159 final size:158
Alignment explanation
Indices: 14871787--14872119 Score: 348
Period size: 159 Copynumber: 2.1 Consensus size: 158
14871777 CATACGGAGT
** * * * * * *
14871787 TCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGTAGGATCAATAGCACGCAGTGG
1 TCATTCCCAGTCTAAGCCCTAGCCAGACCGAGGGTTGCGGCAGCAGGACCAACAGCACGCAGAGG
* * * *
14871852 GGACCGAGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGGTCGGCTGAGCACCCACACGCCCAT
66 GGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAACACCCACACGCCCAT
* *
14871917 TTCATGGGTTGGCTTAGGCATAGGGAGC
131 TTCATGGGTTGACTTAGGCATAGGAAGC
* * *
14871945 TCATT-CCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAG
1 TCATTCCCA-GTCTAAGCCCTAGCCAGACCGAGGGTTGCGGCAGCAGGACCAACAGCACGCAGAG
* * * * * **
14872009 CGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGG-CAGGCTCAACGCCCGTATC-C
65 -GGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTC-GGCTCAACACCCACA-CGC
* ** * *
14872072 TCATTTCATGGGTTGACTTTTGCATATGAAGT
127 CCATTTCATGGGTTGACTTAGGCATAGGAAGC
14872104 TCATTCCCAGTCTAAG
1 TCATTCCCAGTCTAAG
14872120 ATCAAATCGG
Statistics
Matches: 141, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 50 0.35
159 84 0.60
160 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (158 bp):
TCATTCCCAGTCTAAGCCCTAGCCAGACCGAGGGTTGCGGCAGCAGGACCAACAGCACGCAGAGG
GGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCTCAACACCCACACGCCCAT
TTCATGGGTTGACTTAGGCATAGGAAGC
Found at i:14872280 original size:26 final size:26
Alignment explanation
Indices: 14872251--14872303 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14872241 GTTGGCTTAG
14872251 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
14872277 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14872303 G
1 G
14872304 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14873003 original size:25 final size:26
Alignment explanation
Indices: 14872974--14873025 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14872964 GTTAACTTAG
14872974 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14872999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14873025 G
1 G
14873026 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14873544 original size:26 final size:26
Alignment explanation
Indices: 14873515--14873567 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14873505 GTTGGATTAG
*
14873515 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14873541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14873567 G
1 G
14873568 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14875179 original size:26 final size:26
Alignment explanation
Indices: 14875143--14875193 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14875133 TGACTTAGGC
*
14875143 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
14875169 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
14875194 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:14875192 original size:366 final size:355
Alignment explanation
Indices: 14874689--14875385 Score: 832
Period size: 366 Copynumber: 1.9 Consensus size: 355
14874679 GACAACACGT
* * *
14874689 AGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGATTGAACGCCCGCACGC
1 AGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGACTGAACGCCCGCACGC
* *
14874754 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAATACATGTCTAAGCATACGGAGTTCATTCC
66 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATACATGTCTAAGCATACGAAGTTCATTCC
* *
14874819 CAGTCTAAGATCAAACC-AGATCGAGGGTTGCGGCAGCAGGACCAGTAGTAGGATCGACAGCACG
131 CAGTCTAAGATCAAACCGA-ACCGAGGGTT------GC--GA-C---AGTAGGATCGACAACACG
* * * *
14874883 CAGGGGGGATCAAATCGATCCCCGGCTTGCACATTCTGCCTCTCCGG-TCGGTTGAGCACCCGCA
183 CAGGGAGGATCAAATCGATACCCGGCTTGCACATTCTGCCTATCCGGCT-GGCTGAGCACCCGCA
* ** * * *
14874947 CGCTCT-TTTCGTGGGTTGGTTTGGGCATACGGAGTTCA-TCCATGTCTAAGCCCCAATCGGATC
247 CGC-CTGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGATC
14875010 GAGGGTTGTGGCAGCAGGATCAACAGTGAGATCGACAGCATGTAG
311 GAGGGTTGTGGCAGCAGGATCAACAGTGAGATCGACAGCATGTAG
* * * ** * *
14875055 AGGGGGACCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGG-CTGGCTGAACGCTCGCACG
1 AGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGTC-GACTGAACGCCCGCACG
* * *
14875119 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC-ATCCCCA-GTCTAAGTATACGAAGTTCAT
65 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAAT--ACATGTCTAAGCATACGAAGTTCAT
* **
14875182 TCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGGTAACACGCAGGGAGGAT
128 TCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGTAGGATCGACAACACGCAGGGAGGAT
*** ** *
14875247 CGGGTCGATACCCGGCTTGGGCATTCTGCCTATCTGGCTGGCTGAGCACCCGCACGCCTGTTTCA
193 CAAATCGATACCCGGCTTGCACATTCTGCCTATCCGGCTGGCTGAGCACCCGCACGCCTGTTTCA
* * *
14875312 TGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGC
258 TGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAGGGTTGTGGC
14875377 AGCAGGATC
323 AGCAGGATC
14875386 GATAGCACGC
Statistics
Matches: 285, Mismatches: 39, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
353 2 0.01
354 97 0.34
355 43 0.15
357 1 0.00
358 2 0.01
360 2 0.01
365 3 0.01
366 132 0.46
367 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (355 bp):
AGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGTCGACTGAACGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATACATGTCTAAGCATACGAAGTTCATTCC
CAGTCTAAGATCAAACCGAACCGAGGGTTGCGACAGTAGGATCGACAACACGCAGGGAGGATCAA
ATCGATACCCGGCTTGCACATTCTGCCTATCCGGCTGGCTGAGCACCCGCACGCCTGTTTCATGG
GTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAGGGTTGTGGCAGC
AGGATCAACAGTGAGATCGACAGCATGTAG
Found at i:14875645 original size:158 final size:156
Alignment explanation
Indices: 14875169--14875668 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 156
14875159 CAGTCTAAGT
* * * *
14875169 ATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGGTAA
1 ATACGAAGTTCATT-CCATGTCTAAGATC-GACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * * * *
14875233 CACGCAGGGAGGATCGGGTCGATACC-CGGCTTGGGCATTCTGCCTATCTGGCTGGCTGAGCACC
64 CACGCAGGGGGGACCGGGTCGAT-CCTC-GCTTGCGCATTCTGCCTCTCTGACTGGCTAAGCGCC
* *
14875297 CGCACGC-CTGTTTCATGGGTTGCCTTAGGC
127 CACACGCTC-GTTTCATGGGTTGACTTAGGC
* * ** * * * * *
14875327 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCAGGATCGATAGC
1 ATACGAAGTTCATTCCATGTCTAAGATCGA-CCGGACCGAGGGTTGCGACAGCAGGATCGATAGC
* * * * * * * *
14875392 ACGCAGAGTGGGACCAGGTCGATCCTCGACCTGCGTATTATGCCTCTCTGACCGGCTCAGTGCTC
65 ACGCAG-GGGGGACCGGGTCGATCCTCG-CTTGCGCATTCTGCCTCTCTGACTGGCTAAGCGC-C
* * * *
14875457 GA-GCGTTCGTTTCGTGGGTTGACTTAGGC
127 CACACGCTCGTTTCATGGGTTGACTTAGGC
* *
14875486 ATACGAAGTTCATTCCCA-GTCTAAGATTCGACCGGACCAAGGGTTGCAACTA-CAGGATCGATA
1 ATACGAAGTTCATT-CCATGTCTAAGA-TCGACCGGACCGAGGGTTGCGAC-AGCAGGATCGATA
* * * *
14875549 GCATGCAGGGGGGACCGGGTCGATCCTCAGCTTGCACATTCTGCCTCTCCGATTGGCTAAGCGCC
63 GCACGCAGGGGGGACCGGGTCGATCCTC-GCTTGCGCATTCTGCCTCTCTGACTGGCTAAGCGCC
*
14875614 CACACGCTCGTTTCATGGGTTGGCTTAGGC
127 CACACGCTCGTTTCATGGGTTGACTTAGGC
*
14875644 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGAAGTTCATTCCATGTCTAAG
14875669 CATACGTAGT
Statistics
Matches: 267, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 9 0.03
158 141 0.53
159 109 0.41
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
ATACGAAGTTCATTCCATGTCTAAGATCGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGCA
CGCAGGGGGGACCGGGTCGATCCTCGCTTGCGCATTCTGCCTCTCTGACTGGCTAAGCGCCCACA
CGCTCGTTTCATGGGTTGACTTAGGC
Found at i:14875672 original size:26 final size:26
Alignment explanation
Indices: 14875642--14875694 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14875632 GTTGGCTTAG
14875642 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
14875668 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
14875694 G
1 G
14875695 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:14875960 original size:168 final size:170
Alignment explanation
Indices: 14875668--14876020 Score: 415
Period size: 169 Copynumber: 2.1 Consensus size: 170
14875658 CCATGTCTAA
* * * *
14875668 GCATACGTAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGACCAGTA
1 GCATACGAAGTTCATTCATAGTCTAAGACCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTA
* * * * * *
14875733 GTAGGATCGACAGCATGCAGGGGGGATCAGGCTGATCCCCGGCTTGCACATTCTGCCTCT-CGGT
66 GCAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCCGACTTGCACATTATGCCTCTCCGGC
* * * *
14875797 CGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAG
131 CGACTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
14875837 GCATACGAAGTTCATTCAT-GTCTAAGCCCA-ACCGGATCGAGGGTTGTGGCAGCAGGACCGGTA
1 GCATACGAAGTTCATTCATAGTCTAAGACCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTA
* ** * * *
14875900 GCGGGATCGGTAGCACGTAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGG
66 GCAGGATCGACAGCACGCAG-GGGGGACCAGGCTGATCCCCGACTTGCACATTATGCCTCTCCGG
* **
14875965 CCGATTGAACACCCGCACGCTCGTTTTGTGGGTTGACTTAG
130 CCGACTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
14876006 GCATACGGAGTTCAT
1 GCATACGAAGTTCAT
14876021 CCCCAGTCTA
Statistics
Matches: 153, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
167 42 0.27
168 44 0.29
169 67 0.44
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (170 bp):
GCATACGAAGTTCATTCATAGTCTAAGACCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTA
GCAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCCGACTTGCACATTATGCCTCTCCGGC
CGACTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:14876044 original size:26 final size:26
Alignment explanation
Indices: 14876008--14876057 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14875998 TGACTTAGGC
*
14876008 ATACGGAGTTCATCCCCAGTCTAAAT
1 ATACAGAGTTCATCCCCAGTCTAAAT
*
14876034 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATCCCCAGTCTAA
14876058 GATCAGACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAAT
Found at i:14876506 original size:158 final size:158
Alignment explanation
Indices: 14876034--14876533 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 158
14876024 CAGTCTAAAT
* *
14876034 ATACAGAGTTCATTCCCA-GTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGCAGGATCGACA
1 ATACAGAGTTCATT-CCATGTCTAAGATCAGATC-GGACCGAGGGTTGTGACTGCAGGATCGACA
* * * * * * * *
14876097 ACACGCAGGGAGGACCGGGCCGATCC-CTGGCTTGTGCATTCTGCCTATCCGGCTGGCTGAGCAC
64 GCACGTAGGGGGGACCGGGCCGATCCTC-GGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
* * * *
14876161 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
128 CCGAACGCTCATTTCATGGGTTGGCTTAGGC
** ** * * * **
14876192 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTG-GTAGCGGGACCGGTA
1 ATACAGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGTGACT-GCAGGATCGACA
* * * * * * * *
14876255 GCACGTAGAGGGGGACCGAGCCGATCCTTGACTTGCGTATTATGCCTCTCCGACCTGCTCAGTGC
64 GCACGTAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
*
14876320 CCGAACGCTCATTTCATGGGTTGACTTAGGC
128 CCGAACGCTCATTTCATGGGTTGGCTTAGGC
*
14876351 ATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTGTGACTGCAGGATCGACAG
1 ATACAGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGTGACTGCAGGATCGACAG
* * * * *
14876415 CACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCACATTTTGCCTCTTCGGCCGGTTGAGCGCCC
65 CACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCC
* *
14876480 GTACGCTCATTTTATGGGTTGGCTTAGGC
130 GAACGCTCATTTCATGGGTTGGCTTAGGC
*
14876509 ATACGGAGTTCATTCCATGTCTAAG
1 ATACAGAGTTCATTCCATGTCTAAG
14876534 CATACGGAGT
Statistics
Matches: 273, Mismatches: 59, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 141 0.52
159 122 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
ATACAGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGACTGCAGGATCGACAGC
ACGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCG
AACGCTCATTTCATGGGTTGGCTTAGGC
Found at i:14876536 original size:26 final size:26
Alignment explanation
Indices: 14876507--14876559 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14876497 GTTGGCTTAG
14876507 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
14876533 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14876559 G
1 G
14876560 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14876728 original size:865 final size:862
Alignment explanation
Indices: 14873866--14876717 Score: 3627
Period size: 865 Copynumber: 3.3 Consensus size: 862
14873856 CGGCTAAGCA
* *
14873866 CCCGCACTCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * * *
14873931 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGCTTACAGTAGCAGGACCAGCAGCAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCG
** * * * * * *
14873996 ACAGCACATAGGAGGGATCAGATCGATCCCCAGCGTACGCATTCTACCTCTCCGGTCGGCTGAGC
131 ACAGCACGCAGGGGGGATCAG-CCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGC
*
14874061 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
195 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TCCATGTCTAAGCCCCAAC
** * * * * * *
14874126 TAGATCTAGGGTTGTGGTAGCAGGACCGGCAGTGGGATCGGCAACATGTAAAGGGGGATCGAGCT
259 CGGATCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGGCAGCATGTAGAGGGGGACCGGGCT
* * * * * *
14874191 GATGCTC-AGCTTACTCATTATGCCTCTCTGACCGACCTTCTGATCGGTTGAGCGCCCGCACACT
324 GATCCTCGA-CTTGCGCATTATG-C-CTCT--CCG-GC--C-GA----TTGAACGCCCGCACGCT
** * * *
14874255 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCCAAGTATACGGAGTTCATTCCT
376 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATAC-GAGTTCATTCCC
* * * *
14874320 AGTCTAAGATCAGACTGGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGAGGACCAGG
440 AGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGAGGACCGGG
* * * **
14874385 CCAATCCCCGACTTGTGCATTCTGCCTATCTAGCCAGCTGAGCACCCGCACGCCCGTTTCGTGGG
505 CCGAT-CCCGGCTTGTGCATTCTGCCTATCTGGCTGGCTGAGCACCCGCACGCCCGTTTCGTGGG
* *
14874450 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGTGGCAGTA
569 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCA
** * * * * * * * * * *
14874515 AAACCGACAGCACGTATAGGGGGATCGGGCTGATCCTTGGCTTGCGAATTATACCCCTTTGACCG
634 GGACCGATAGCACGTAGAGGGGGACCGAGCCGATCCTTGACTTGCGTATTATGCCTCTCTGACCG
*** * * * *
14874580 GCTCAACACCCGCACGCTTATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAG
699 GCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAG
* * * * *
14874645 ATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAACACGTA-GGGGGACTGGGCCGATCCC
763 ATCAGACCGGACCGAGGGTTGCGACTGCAGGATCGACAGCACGTAGGGGGGAC-GGGCCGATCCT
* * * *
14874709 CAGCTTACGCATTCTGCCTCTCCGGTCGATTGAACG
827 CAGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCG
* * *
14874745 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAATACATGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * * *
14874810 GTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAGGACCAGTAGTAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCG
** * *
14874875 ACAGCACGCAGGGGGGATCAAATCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGC
131 ACAGCACGCAGGGGGGATC-AGCCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
14874940 ACCCGCACGCTCTTTTCGTGGGTTGGTTTGGGCATACGGAGTTCATCCATGTCTAAGCCCCAATC
195 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCATGTCTAAGCCCCAACC
* ** * *
14875005 GGATCGAGGGTTGTGGCAGCAGGATCAACAGTGAGATCGACAGCATGTAGAGGGGGACCGGGCTG
260 GGATCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGGCAGCATGTAGAGGGGGACCGGGCTG
* * * ** *
14875070 ATCCTCGGCTTGTGCATTATGCCTCTCCGGCTGGCTGAACGCTCGCACGCTCGTTTTGTGGGTTG
325 ATCCTCGACTTGCGCATTATGCCTCTCCGGCCGATTGAACGCCCGCACGCTCGTTTTGTGGGTTG
14875135 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGAAGTTCATTCCCAGTCTAAGATCAGA
390 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACG-AGTTCATTCCCAGTCTAAGATCAGA
* * * ** * *
14875200 CCGAACCGAGGGTTGCGACAGTAGGATCGGTAACACGCAGGGAGGATCGGGTCGATACCCGGCTT
454 CTGGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGAGGACCGGGCCGAT-CCCGGCTT
* * * *
14875265 GGGCATTCTGCCTATCTGGCTGGCTGAGCACCCGCACGCCTGTTTCATGGGTTGCCTTAGGCATA
518 GTGCATTCTGCCTATCTGGCTGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* * * *
14875330 GGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCAGGATCGATAGCACG
583 GGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGATAGCACG
* * * * * *
14875395 CAGAGTGGGACC-AGGTCGATCCTCGACCTGCGTATTATGCCTCTCTGACCGGCTCAGTGCTCGA
648 TAGAGGGGGACCGA-GCCGATCCTTGACTTGCGTATTATGCCTCTCTGACCGGCTCAGTGCCCGA
* * *
14875459 GCGTTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTC-GACCGGAC
712 ACGCTCATTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGA-TCAGACCGGAC
* * * * * * *
14875523 CAAGGGTTGCAACTACAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCTCAGCTTGCACAT
775 CGAGGGTTGCGACTGCAGGATCGACAGCACGTAGGGGGGA-CGGGCCGATCCTCAGCTTGCACAT
* * * *
14875588 TCTGCCTCTCCGATTGGCTAAGCG
839 TCTGCCTCTCCGGTCGGTTGAGCG
* *
14875612 CCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGTA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * *
14875677 GTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGACCAGTAGTAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCG
* * *
14875742 ACAGCATGCAGGGGGGATCAGGCTGATCCCCGGCTTGCACATTCTGCCTCT-CGGTCGGCTGAGC
131 ACAGCACGCAGGGGGGATCA-GCCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
14875806 ACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCATGTCTAAG-CCCAACC
195 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCATGTCTAAGCCCCAACC
* * * *
14875870 GGATCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGGTAGCACGTAGAGGGGGACCGGGCTG
260 GGATCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGGCAGCATGTAGAGGGGGACCGGGCTG
* *
14875935 ATCCCCGACTTGCGCATTATGCCTCTCCGGCCGATTGAACACCCGCACGCTCGTTTTGTGGGTTG
325 ATCCTCGACTTGCGCATTATGCCTCTCCGGCCGATTGAACGCCCGCACGCTCGTTTTGTGGGTTG
*
14876000 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAATATACAGAGTTCATTCCCAGTCTAAGATCAGA
390 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATAC-GAGTTCATTCCCAGTCTAAGATCAGA
14876065 CTGGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGAGGACCGGGCCGATCCCTGGCTT
454 CTGGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGAGGACCGGGCCGATCCC-GGCTT
*
14876130 GTGCATTCTGCCTATCCGGCTGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
518 GTGCATTCTGCCTATCTGGCTGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* * * *
14876195 GGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGGTAGCACG
583 GGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGATAGCACG
* *
14876260 TAGAGGGGGACCGAGCCGATCCTTGACTTGCGTATTATGCCTCTCCGACCTGCTCAGTGCCCGAA
648 TAGAGGGGGACCGAGCCGATCCTTGACTTGCGTATTATGCCTCTCTGACCGGCTCAGTGCCCGAA
* * *
14876325 CGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCG
713 CGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * *
14876390 AGGGTTGTGACTGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCACATTT
777 AGGGTTGCGACTGCAGGATCGACAGCACGTAGGGGGGA-CGGGCCGATCCTCAGCTTGCACATTC
* *
14876455 TGCCTCTTCGGCCGGTTGAGCG
841 TGCCTCTCCGGTCGGTTGAGCG
* * *
14876477 CCCGTACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* ** * * *
14876542 GTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAAGACTAGAAGCAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCG
* * * ** *
14876607 ACAGCACGTAGGGGGGATCGAGCCGATCCTC-GCTTTACGCATT-TGCCTCT-CAATCGGTTGAG
131 ACAGCACGCAGGGGGGATC-AGCCGATCCCCGGC-TTACACATTCTGCCTCTCCGGTCGGCTGAG
** * *
14876669 TGCCCGCATGCTCGTTTTGTGGG-TGGACTTAGGCATACGGAGTTCATCC
194 CACCCGCACGCTCGTTTCGTGGGTTGG-CTTAGGCATACGGAGTTCATCC
14876718 CCAGTCTAAG
Statistics
Matches: 1697, Mismatches: 259, Indels: 49
0.85 0.13 0.02
Matches are distributed among these distances:
863 3 0.00
864 60 0.04
865 681 0.40
866 437 0.26
867 209 0.12
868 1 0.00
870 1 0.00
873 1 0.00
874 3 0.00
876 4 0.00
877 1 0.00
878 85 0.05
879 210 0.12
880 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (862 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCG
ACAGCACGCAGGGGGGATCAGCCGATCCCCGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCA
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCATGTCTAAGCCCCAACCG
GATCGAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGGCAGCATGTAGAGGGGGACCGGGCTGA
TCCTCGACTTGCGCATTATGCCTCTCCGGCCGATTGAACGCCCGCACGCTCGTTTTGTGGGTTGA
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGAGTTCATTCCCAGTCTAAGATCAGACT
GGACCGAGGGTTGCGACAGCAGGATCGACAACACGCAGGGAGGACCGGGCCGATCCCGGCTTGTG
CATTCTGCCTATCTGGCTGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGATAGCACGTAG
AGGGGGACCGAGCCGATCCTTGACTTGCGTATTATGCCTCTCTGACCGGCTCAGTGCCCGAACGC
TCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
TTGCGACTGCAGGATCGACAGCACGTAGGGGGGACGGGCCGATCCTCAGCTTGCACATTCTGCCT
CTCCGGTCGGTTGAGCG
Found at i:14876730 original size:26 final size:26
Alignment explanation
Indices: 14876701--14876753 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14876691 GTGGACTTAG
*
14876701 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
14876727 GCATACGGAGTTTATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
14876753 G
1 G
14876754 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:14876732 original size:194 final size:196
Alignment explanation
Indices: 14876402--14876782 Score: 547
Period size: 194 Copynumber: 2.0 Consensus size: 196
14876392 GGTTGTGACT
* * **
14876402 GCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCACATTTTGCCTCTTCGGC
1 GCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTACACATTTTGCCTCTTCAAC
* *
14876467 CGGTTGAGCGCCCGTACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CGGTTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTA
* * *
14876532 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAAGACTAGA
131 AGCATACGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAAGACTAGA
14876597 A
196 A
*
14876598 GCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCTC-GCTTTACGCA-TTTGCCTC-TCAA
1 GCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCTCGGC-TTACACATTTTGCCTCTTCAA
* * * * *
14876660 TCGGTTGAGTGCCCGCATGCTCGTTTTGTGGG-TGGACTTAGGCATACGGAGTTCATCCCCA-GT
65 CCGGTTGAGCGCCCGCACGCTCATTTTATGGGTTGG-CTTAGGCATACGGAGTTCAT-CCCATGT
* *
14876723 CTAAGCATACGGAGTTTATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCA
128 CTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCA
14876783 GGATCGATAG
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
193 3 0.02
194 105 0.64
195 13 0.08
196 44 0.27
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (196 bp):
GCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTACACATTTTGCCTCTTCAAC
CGGTTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTA
AGCATACGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAAGACTAGA
A
Found at i:14882010 original size:26 final size:26
Alignment explanation
Indices: 14881980--14882032 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14881970 GTTGGCTTAG
*
14881980 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGACTTCATTCCTA-GTCTAA
**
14882006 GCATATGGACTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCTAGTCTAA
14882032 G
1 G
14882033 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGACTTCATTCCTAGTCTAA
Found at i:14883024 original size:158 final size:156
Alignment explanation
Indices: 14882773--14883219 Score: 429
Period size: 158 Copynumber: 2.8 Consensus size: 156
14882763 TGCGACAGCA
* * *
14882773 AGATCGGCAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGG
1 AGATCGGCAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGG-TCG
* * * * *
14882838 CTGAGTGCCCGCATGC-C-TGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 CTAAGCGCCCGCACGCTCAT-TT-CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* **
14882901 GCCCTAGCT-GGA-TCAAGGGTTGTGGTAGC
128 GCCC-AGATCGGACT-AAGGGTTACGGTAGC
* * * * * *
14882930 GAGATAGGCAGCATGTAGAGGGGGACCGAGCCCATCCTCGGCTTGTGCATTATGCCTCTCCGGTC
1 -AGATCGGCAGCACGTAG-GGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTC
* * * **
14882995 GCTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAA
64 GCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
** *
14883059 GATCAGATCGGACTGAGGGTTACGGTAGC
128 GCCCAGATCGGACTAAGGGTTACGGTAGC
* * * * * * *
14883088 AGGATCGACAGCACGCAGTGGGGGATCGGGTTGGTCCTCGGCTTGCT-TATTCTACCTCTCCGGT
1 A-GATCGGCAGCACGTAG-GGGGGACCGGGTCGATCCTCGGCTTG-TGCATTCTGCCTCTCCGGT
* * *
14883152 CGGCTAAACGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCGTTCCATGTCTA
63 C-GCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
14883217 AGC
127 AGC
14883220 ATACAGAGTT
Statistics
Matches: 232, Mismatches: 47, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 128 0.55
159 99 0.43
160 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (156 bp):
AGATCGGCAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGC
TAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CAGATCGGACTAAGGGTTACGGTAGC
Found at i:14883414 original size:26 final size:26
Alignment explanation
Indices: 14883384--14883436 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14883374 GTTAACTTAG
*
14883384 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
14883410 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
14883436 G
1 G
14883437 ATCGAACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:14883783 original size:33 final size:33
Alignment explanation
Indices: 14883738--14883806 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
14883728 ATACGGAGTT
14883738 CATTCCTCGTCTAAGAGTTTGAGCCACGATGCA
1 CATTCCTCGTCTAAGAGTTTGAGCCACGATGCA
14883771 CATT-CTCAGTCTAAGAGTTTGAGCCACGATGCA
1 CATTCCTC-GTCTAAGAGTTTGAGCCACGATGCA
14883804 CAT
1 CAT
14883807 GCTGGGCTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
32 3 0.09
33 32 0.91
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (33 bp):
CATTCCTCGTCTAAGAGTTTGAGCCACGATGCA
Found at i:14884497 original size:26 final size:26
Alignment explanation
Indices: 14884460--14884512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14884450 GTTGGCTTAG
14884460 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTTATCCCCAGTCTAA
* * *
14884486 GCATACGGAGTTTATTCCCAGTTTAA
1 GCATACGAAGTTTATCCCCAGTCTAA
14884512 G
1 G
14884513 ATTAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTTATCCCCAGTCTAA
Found at i:14885015 original size:26 final size:26
Alignment explanation
Indices: 14884985--14885037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14884975 GTTAACTTAG
*
14884985 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
14885011 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
14885037 G
1 G
14885038 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:14885239 original size:105 final size:104
Alignment explanation
Indices: 14885071--14885267 Score: 270
Period size: 105 Copynumber: 1.9 Consensus size: 104
14885061 GCAGCAAGAT
* * * ** *
14885071 CGACAGCATGCAGGGAGGACCAGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCAGTCGGCTGA
1 CGACAACATGCAGGGAGGACCAGGCCGATCCCCGACTAACACATTCTGCCTCTCCAGTCGGCTGA
14885136 GCGCCCGCACGCCCATTTCATGGGTTGTGGCAGTGGGAC
66 GCGCCCGCACGCCCATTTCATGGGTTGTGGCAGTGGGAC
* *
14885175 CGACAACATGCAGAGGGGGACCAGGCCGATCCCCGACTAACACATTCTGCTTCTCCAG-CTGGCT
1 CGACAACATGCAG-GGAGGACCAGGCCGATCCCCGACTAACACATTCTGCCTCTCCAGTC-GGCT
* * *
14885239 GAGCGCCCGCACGCTCGTTTCGTGGGTTG
64 GAGCGCCCGCACGCCCATTTCATGGGTTG
14885268 GCTGAGGCAT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
104 13 0.16
105 67 0.84
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.20
Consensus pattern (104 bp):
CGACAACATGCAGGGAGGACCAGGCCGATCCCCGACTAACACATTCTGCCTCTCCAGTCGGCTGA
GCGCCCGCACGCCCATTTCATGGGTTGTGGCAGTGGGAC
Found at i:14886023 original size:26 final size:26
Alignment explanation
Indices: 14885993--14886045 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14885983 GTTGACTTAG
*
14885993 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
14886019 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14886045 G
1 G
14886046 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14886524 original size:26 final size:26
Alignment explanation
Indices: 14886494--14886553 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
14886484 GTTAGCTTAG
*
14886494 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGACTTCATTCTCA-GTCTAA
**
14886520 GCATATGGACTTCATTCTCAGTCTAA
1 GCATACAGACTTCATTCTCAGTCTAA
14886546 G-AT-CAGAC
1 GCATACAGAC
14886554 CGAACCGAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
24 3 0.11
25 2 0.07
26 21 0.75
27 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGACTTCATTCTCAGTCTAA
Found at i:14887056 original size:26 final size:26
Alignment explanation
Indices: 14887020--14887072 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14887010 GTTGGCTTAG
14887020 GCATACGGAG-TTCATTCCATGTCTAA
1 GCATACGGAGTTTCATTCCA-GTCTAA
14887046 GCATACGGAGTTTCATTCCAGTCTAA
1 GCATACGGAGTTTCATTCCAGTCTAA
14887072 G
1 G
14887073 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTTCATTCCAGTCTAA
Found at i:14889944 original size:26 final size:26
Alignment explanation
Indices: 14889903--14889955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14889893 CCCGTCCGAT
*
14889903 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14889929 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14889955 C
1 C
14889956 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14890902 original size:27 final size:28
Alignment explanation
Indices: 14890849--14890902 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
14890839 CCAGTTCAAT
*
14890849 CTTAAACTGGGAATAGAACTCCGTATGG
1 CTTAAACTGGGAATAGAACTCCATATGG
* *
14890877 CTTAGACTGGGGAT-GAACTCCATATG
1 CTTAAACTGGGAATAGAACTCCATATG
14890903 CCCTAAGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (28 bp):
CTTAAACTGGGAATAGAACTCCATATGG
Found at i:14891565 original size:159 final size:158
Alignment explanation
Indices: 14891260--14891699 Score: 368
Period size: 159 Copynumber: 2.8 Consensus size: 158
14891250 AACTTTGTAT
* ** * * * * * * * *
14891260 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAATGCGTGTGTGGGCGCTCAG
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGAGCGCTCAA
* * * * * **
14891325 CCGGTCGGGGAGGCATGAATGCGCAAGCCGAGGATCGA-CCGGTCCCTCCCTACGTACTGTCAAT
66 CCGATCGGAGAGGCA-GAATGCACAAGCCGAGGATCGACCCGATCCC-CCCTACGTGCTGTCGGT
*** * ** *
14891389 CCTGTTGCTGCAACCCTCAATCCGACCCAA
129 CCCACTACCACAGCCCTCAATCCGACCCAA
* * * * * * *
14891419 TCTTAGAC-TGAAAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATG-AAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGAGCGCTCA
* *
14891483 ACC-AGTCGGAGAGGCATAATGTGA-AAGCC-AGGGATCGACCCGATCCCCCTCTACGTGCTGTC
65 ACCGA-TCGGAGAGGCAGAATG-CACAAGCCGA-GGATCGACCCGATCCCCC-CTACGTGCTGTC
** * ****
14891545 GGTCCCACTACCACAGCCCTCTGTCCGGCTGGG
126 GGTCCCACTACCACAGCCCTCAATCCGACCCAA
* * *
14891578 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACATGAAACGGGCGTGCGAGCGCTCAA
1 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGAGCGCTCAA
* *
14891643 CCGATCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCT
66 CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTGCT
14891700 ACCGATCATA
Statistics
Matches: 221, Mismatches: 50, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 30 0.14
159 186 0.84
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGAGCGCTCAA
CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGGTCC
CACTACCACAGCCCTCAATCCGACCCAA
Found at i:14891767 original size:26 final size:26
Alignment explanation
Indices: 14891738--14891789 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14891728 TGGTCTGATA
14891738 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
* *
14891764 TTAGACTGGGGATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
14891790 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:14892321 original size:26 final size:26
Alignment explanation
Indices: 14892283--14892335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14892273 GGCTCAAACT
14892283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14892309 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14892335 C
1 C
14892336 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14892612 original size:159 final size:159
Alignment explanation
Indices: 14892308--14892596 Score: 427
Period size: 160 Copynumber: 1.8 Consensus size: 159
14892298 AACTCCGTAT
** * * **
14892308 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
** * * *
14892373 CCGGTCAGAGATGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTATGTGCTACCGGTC
66 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGATC
14892438 CCACTGCCACAACCCTTGGTTCGACTGGG
131 CCACTGCCACAACCCTTGGTTCGACTGGG
14892467 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAGCGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA-CGAGCGTGCGGGCACTCA
* * * *
14892532 GCTGACCGGAGAGGCAGAATGTACAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGAT
65 GCCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGAT
14892596 C
130 C
14892597 TTGCTGCCGC
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
159 56 0.49
160 58 0.51
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGATC
CCACTGCCACAACCCTTGGTTCGACTGGG
Found at i:14892631 original size:159 final size:159
Alignment explanation
Indices: 14892308--14892653 Score: 392
Period size: 159 Copynumber: 2.2 Consensus size: 159
14892298 AACTCCGTAT
* * * **
14892308 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
** * * *
14892373 CCGGTCAGAGATGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTATGTGCTACCGGTC
66 CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGATC
* * * ***
14892438 CCACTGCCACAACCCTTGGTTCGACTGGG
131 CCACTGCCACAACCCTCGATCCGACTCAA
*
14892467 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAGCGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-CGAGCGTGCGGGCACTCA
* * * *
14892532 GCTGACCGGAGAGGCAGAATGTACAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGAT
65 GCCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGAT
*** * *
14892596 CTTGCTGCCGCAACCCTCGATCC-AGTTCAA
130 CCCACTGCCACAACCCTCGATCCGA-CTCAA
* *
14892626 TCTTAGAC-TGGGAGTGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14892654 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
158 2 0.01
159 95 0.61
160 58 0.37
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTACCGATC
CCACTGCCACAACCCTCGATCCGACTCAA
Found at i:14892663 original size:26 final size:26
Alignment explanation
Indices: 14892627--14892679 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14892617 CCAGTTCAAT
14892627 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
14892653 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
14892679 C
1 C
14892680 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:14893288 original size:159 final size:160
Alignment explanation
Indices: 14892861--14893308 Score: 421
Period size: 159 Copynumber: 2.8 Consensus size: 160
14892851 AACTCCGTAT
* * * **
14892861 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAAACCACGAAACGAGCGTGCGGGTGCTGGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAG
* * * * * * *
14892926 TCGACCGGAGAGGTAGAATGCGCAAGT-CGGGGACCGACCCAGTGCCCCT-TACGTGCTGTCAAT
66 TCGATCGGAGAGGTAGAATGCGCAAGTAAGGGGATCGGCCCAATCCCCCTCTACGTGCTGCCAAT
* * *
14892989 CCTACTACCACAACCCTCGGTCTGGGCCGA
131 CCTACTACCACAACCCTCGGTCTCGACAGA
* ** * *
14893019 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCATGGAACGAGCGTTCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAA
* * * * * * * * *
14893083 GTC-AGTCGAAAAGGCATAATGCGTAAGCCAA--GGATTGGCTCGATCCCCCTCTACGTGCTGCC
65 GTCGA-TCGGAGAGGTAGAATGCGCAAG-TAAGGGGATCGGCCCAATCCCCCTCTACGTGCTGCC
* * * * *
14893145 AGT-CTCGCTGCCATAACCCTCGGTC-CGACTAGG
128 AATCCT-ACTACCACAACCCTCGGTCTCGAC-AGA
* * * *
14893178 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAG
* *
14893243 CCGATCGGAGAGGTAGAATGCGCAA-TAAGGGGATCGGCCCAATCCCCC-CTACGTGCTGCCGAT
66 TCGATCGGAGAGGTAGAATGCGCAAGTAAGGGGATCGGCCCAATCCCCCTCTACGTGCTGCCAAT
14893306 CCT
131 CCT
14893309 GCTGTGCCAA
Statistics
Matches: 223, Mismatches: 55, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.02
158 100 0.45
159 117 0.52
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAG
TCGATCGGAGAGGTAGAATGCGCAAGTAAGGGGATCGGCCCAATCCCCCTCTACGTGCTGCCAAT
CCTACTACCACAACCCTCGGTCTCGACAGA
Found at i:14893363 original size:158 final size:157
Alignment explanation
Indices: 14892862--14893363 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 157
14892852 ACTCCGTATG
* * * **
14892862 CTTAGACATGGAATGAACTCCGTATGCCTAAGCGAAACCACGAAACGAGCGTGCGGGTGCTGGGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGT
* * * * * * * *
14892927 CGACCGGAGAGGTAGAATGCGCAAGT-CGGGGACCGACCCAGTGCCCCTTACGTGCTGTCAATCC
66 CGATCGGAGAGGTAGAATGCGCAAGTAAGGGGATCGGCCCAATCCCCCCTACGTGCTG-CCATCC
** *
14892991 TACT-ACCACAACCCTCGGTCTGGGC-CGAT
130 T-CTGTGC-CAACCCTCGGTCT-GACTCGAT
** * *
14893020 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCATGGAACGAGCGTTCGGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAG
* * * * * * * * *
14893084 TC-AGTCGAAAAGGCATAATGCGTAAGCCAA--GGATTGGCTCGATCCCCCTCTACGTGCTGCCA
65 TCGA-TCGGAGAGGTAGAATGCGCAAG-TAAGGGGATCGGCCCAATCCCCC-CTACGTGCTGCCA
* * **
14893146 GT-CTC-GCTGCCATAACCCTCGGTCCGACTAGGG
127 -TCCTCTG-TGCC--AACCCTCGGTCTGACTCGAT
* * * * *
14893179 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGT
14893244 CGATCGGAGAGGTAGAATGCGCAA-TAAGGGGATCGGCCCAATCCCCCCTACGTGCTGCCGATCC
66 CGATCGGAGAGGTAGAATGCGCAAGTAAGGGGATCGGCCCAATCCCCCCTACGTGCTGCC-ATCC
* * *
14893308 TGCTGTGCCAACCCTCGATTTGATTCGAT
130 T-CTGTGCCAACCCTCGGTCTGACTCGAT
14893337 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14893364 TTAGATTGGG
Statistics
Matches: 265, Mismatches: 59, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
157 7 0.03
158 139 0.52
159 111 0.42
160 7 0.03
161 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGT
CGATCGGAGAGGTAGAATGCGCAAGTAAGGGGATCGGCCCAATCCCCCCTACGTGCTGCCATCCT
CTGTGCCAACCCTCGGTCTGACTCGAT
Found at i:14893373 original size:26 final size:26
Alignment explanation
Indices: 14893337--14893389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14893327 TTGATTCGAT
14893337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14893363 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14893389 C
1 C
14893390 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14893492 original size:184 final size:184
Alignment explanation
Indices: 14893191--14893547 Score: 461
Period size: 184 Copynumber: 1.9 Consensus size: 184
14893181 TAGACATGGA
*** * * * *
14893191 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAACCGATCGAAGAGG
* * **
14893256 TAGAATGCGCAATAAGGGGATCGGCCCAATCCCCCCTACGTGCTGCCGATCCTGCT-GTGCCAAC
66 TAGAATGCGCAAGAAGGGGATCGACCCAATCCCCCCTACGTGCTGCCGATCCTGCTACCG-CAAC
**
14893320 CCTC-GATTTGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
130 CCTCAG-TCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
* * *
14893375 ATGAACTCCGTATGCCTAAGTCAACCCATGAACCAAGCGTGCAGGCGCTCAACCGAAT-GAAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAACCG-ATCGAAGAG
** * *
14893439 GTAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAAC
65 GTAGAATGCGCAAGAAGGGGATCGACCCAATCCCCCCTACGTGCTGCCGATCCTGCTACCGCAAC
*
14893504 CCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGC
130 CCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
14893548 CTAAGCGAAC
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
184 143 0.97
185 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAACCGATCGAAGAGG
TAGAATGCGCAAGAAGGGGATCGACCCAATCCCCCCTACGTGCTGCCGATCCTGCTACCGCAACC
CTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
Found at i:14893738 original size:158 final size:158
Alignment explanation
Indices: 14893363--14893739 Score: 449
Period size: 158 Copynumber: 2.4 Consensus size: 158
14893353 ACTCCGTATG
* * * * *
14893363 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAACCAAGCGTGCAGGCGCTCAAC
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGTGCTCAAC
* * * * * * *
14893428 CGAATGAAGAGGTAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCT
66 CGAACGAAGAGGTAGAATGCACAAGCTGGGGACCGACCCGAGCCCCCCTACATGCTGCCAATCCT
*
14893493 GCTACCGCAACCCTCAGTCCGATCTGAT
131 ACTACCGCAACCCTCAGTCCGATCTGAT
* *
14893521 CTTAGATTGGGAATGAACTCCGTATGCCTAAG-CGAACCCACGAAACGAGCGTGT-GGGTGCTCA
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGCGT-TCAGGTGCTCA
* * * * * *
14893584 ACCGACCGGAGAGGTAGAATGCACAAGCTGGGGACCGATCCG-GCGGCCCCTGCATGTTGCCAAT
64 ACCGAACGAAGAGGTAGAATGCACAAGCTGGGGACCGACCCGAGC-CCCCCTACATGCTGCCAAT
* *
14893648 CCTAC-AGCCGCAACCCTCGGTCCGGT-TCGAT
128 CCTACTA-CCGCAACCCTCAGTCCGATCT-GAT
* *
14893679 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTTCAGGTGCT
1 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGTGCT
14893740 GAGTCAGTCG
Statistics
Matches: 185, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
157 5 0.03
158 179 0.97
159 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGTGCTCAAC
CGAACGAAGAGGTAGAATGCACAAGCTGGGGACCGACCCGAGCCCCCCTACATGCTGCCAATCCT
ACTACCGCAACCCTCAGTCCGATCTGAT
Found at i:14894901 original size:26 final size:26
Alignment explanation
Indices: 14894863--14894913 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14894853 GTTTGATCTT
*
14894863 AGACTGAGAATGAACTCCGTATGCTG
1 AGACTGAGAATGAACTCCATATGCTG
* *
14894889 AGACTGGGGATGAACTCCATATGCT
1 AGACTGAGAATGAACTCCATATGCT
14894914 TAAGTCAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
AGACTGAGAATGAACTCCATATGCTG
Found at i:14896053 original size:184 final size:184
Alignment explanation
Indices: 14895738--14896303 Score: 500
Period size: 184 Copynumber: 3.0 Consensus size: 184
14895728 TCCGGCTGGG
* * * * * *
14895738 GCTTAGACATGGAATGAACTCCCTATGCATAAG-CGAACCCATGAAACGGGCATGCGAGCGTTCA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGAC-AACCCATGAAACGAGCGTGCGAGCGCTCA
* * ** * *
14895802 GTCGGTCGGAGAGGCAGAATGGGCGGGCCGGGGATTGGCCCGGT-CCCTCCTACGTGCTATC-GA
65 GTCGATCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGGTCCCCT-CTGCGTGCTATCAGA
* * *
14895865 TCCTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAGACTAAGAATGAATTCCATAT
128 TCCTGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTAAGAATGAACTCCATAT
* * * * *
14895922 GCTTAGAC-TGGGGATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGTGCGCTCA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGAGCGCTCA
*
14895986 GTCGATCGGTGAGGCAGAATGCGCAAGACGGGGATCGGCCCGGTCCCCTCTGCGTG-T-TGCAGA
65 GTCGATCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGGTCCCCTCTGCGTGCTAT-CAGA
* * ** * *
14896049 TCCTGCTACTAGTCCTACTGCCGCAAGCCTCGATCCAGTCCAATCTTAGACTACGAATGAACTCT
128 TCCTG---CT-G------T--CGCAACCCTCGGTCTGGTCCAATCTTAGACTAAGAATGAACTCC
14896114 ATAT
181 ATAT
* * *
14896118 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGTGCTCA-
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGAGCGCTCAG
* * * * * * *
14896182 ACCAGCCGGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGGTCCCCCCTGCATGCTATCAG-T
66 TCGA-TCGGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGGTCCCCTCTGCGTGCTATCAGAT
* ** * ** *
14896246 CTTGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
129 CCTGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTAAGAATGAACTCCATAT
14896302 GC
1 GC
14896304 CTAAGTTAAC
Statistics
Matches: 306, Mismatches: 54, Indels: 44
0.76 0.13 0.11
Matches are distributed among these distances:
182 1 0.00
183 3 0.01
184 141 0.46
185 5 0.02
187 2 0.01
188 1 0.00
193 2 0.01
194 1 0.00
195 3 0.01
196 141 0.46
197 5 0.02
198 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGAGCGCTCAG
TCGATCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCGGTCCCCTCTGCGTGCTATCAGATCC
TGCTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTAAGAATGAACTCCATAT
Found at i:14896493 original size:159 final size:158
Alignment explanation
Indices: 14896118--14896614 Score: 366
Period size: 158 Copynumber: 3.1 Consensus size: 158
14896108 AACTCTATAT
* * * * * **
14896118 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCTCA
* * * * * *
14896182 ACCAG-CCGGAGAGGCAGAATGTGCAAG-CTGGGGA-CCGGCCCGGTCCCCCCTGCATGCTATC-
65 A-CAGACCGAAGAGGCAGAATGCGCAAGTC-GAGGATCAGG-CCGGTCCCCCCTACATGCTACCG
** * * * * ***
14896243 AGTCTTGCTACCGCAACCCTCAG-TCTGGTCCAA
127 A-TCCCGCTACCACAACCCTTAGTTCCGCT-GGG
* * ** * * * * * *
14896276 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTTCGGACGTTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCTCAA
* * * *
14896341 CCGACCGAAGAGGCATAATGCGCAAGTCGGGGAT-AGGCTCGGTCCCCCTCTACGTGCTACCGAT
66 CAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGGC-CGGTCCCCC-CTACATGCTACCGAT
14896405 CCCGCTACCACAACCCTTAGTTCCGCTGGG
129 CCCGCTACCACAACCCTTAGTTCCGCTGGG
* *
14896435 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGGGCATACGGACGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCTCA
* * * * * *
14896499 ATAGGCCGGAGAGGTAGAATGCGCAAGTCGAGGATCAGTCCGGTCCCCCCTATATGCTACCGATC
65 ACAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGGCCGGTCCCCCCTACATGCTACCGATC
* * * * * *
14896564 CTGCTGCCGCAACCC-TCGATCCGATCT-GA
130 CCGCTACCACAACCCTTAGTTCCG--CTGGG
*
14896593 TCTTAGACTGGGAATGAACTCC
1 GCTTAGACTGGGAATGAACTCC
14896615 ATTTGCTTAG
Statistics
Matches: 269, Mismatches: 57, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 11 0.04
158 133 0.49
159 116 0.43
160 9 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCTCAA
CAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGGCCGGTCCCCCCTACATGCTACCGATCC
CGCTACCACAACCCTTAGTTCCGCTGGG
Found at i:14897001 original size:184 final size:184
Alignment explanation
Indices: 14896688--14897052 Score: 448
Period size: 184 Copynumber: 2.0 Consensus size: 184
14896678 GCTCAACCAG
* * * ** ** *
14896688 TCGGAGAGGCATAACGCACAAGCTGGGGATTAGCTCGGTCCCCCTCTGTGTGCTGTCGATCCCGC
1 TCGGAGAGGCATAACGCACAAGCCGGGGATCAGCTCGATCCCCCTCTACGTGCTACCGATCCCAC
* * * * *
14896753 TGTCGGTCTTGCTGCCACAACCCTCAGTCTGGCCGAGGCTTAAACATGGAATGAACTTCGTATGC
66 TGCCGGTCCTGCTACCACAACCCTCAGTCCGGCCGAGGCTTAAACATGGAATGAACTCCGTATGC
* * *
14896818 CTAAGCGAACCCACAAAATGAGCGTGCGAGCGCTCTA-TCGGCCGGAGAGGCCGA
131 CTAAGCCAACCCACAAAACGAGCGTGCGAGCGCT-TATTCGGCCAGAGAGGCCGA
*
14896872 TCGGAGAGGTATAACGCACAAGCCGGGGATCAGC-CTGATCCCCCTCTACGTGCTACCGATCCCA
1 TCGGAGAGGCATAACGCACAAGCCGGGGATCAGCTC-GATCCCCCTCTACGTGCTACCGATCCCA
* * * * *
14896936 CTGCCGGTCCTGCTACCATAACCCTC-GATCCGGCTGGGGCTTAGACATGTAATGAACTCCGTAT
65 CTGCCGGTCCTGCTACCACAACCCTCAG-TCCGGCCGAGGCTTAAACATGGAATGAACTCCGTAT
* * * *
14897000 GCCTAATCCAACCCACGAAACGAGCGTGCGGGTGCTTATTCGGCCAGAGAGGC
129 GCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTTATTCGGCCAGAGAGGC
14897053 AGAATGAGCA
Statistics
Matches: 152, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 4 0.03
184 148 0.97
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (184 bp):
TCGGAGAGGCATAACGCACAAGCCGGGGATCAGCTCGATCCCCCTCTACGTGCTACCGATCCCAC
TGCCGGTCCTGCTACCACAACCCTCAGTCCGGCCGAGGCTTAAACATGGAATGAACTCCGTATGC
CTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTTATTCGGCCAGAGAGGCCGA
Found at i:14897163 original size:26 final size:26
Alignment explanation
Indices: 14897134--14897186 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14897124 CCGGTTCGAT
*
14897134 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14897160 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14897186 C
1 C
14897187 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14897359 original size:26 final size:26
Alignment explanation
Indices: 14897330--14897385 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14897320 CCGGTCTGAT
14897330 CTTAGAC-TGGTAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
14897356 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14897382 CTTA
1 CTTA
14897386 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14897474 original size:196 final size:196
Alignment explanation
Indices: 14897102--14897485 Score: 481
Period size: 196 Copynumber: 2.0 Consensus size: 196
14897092 GTGCTGCCGA
14897102 TCCTACTGTCACAACCCTCAGTCCGGTTCGATCTTAGACTGTGAATGAACTCCGTATGCTTAGAC
1 TCCTACTGTCACAACCCTCAGTCCGGTTCGATCTTAGACTGTGAATGAACTCCGTATGCTTAGAC
* * ** * * *
14897167 TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCTGGATGA
66 TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCTCGACGA
* * * * ** * * *
14897232 AGAGGCAGAATGTGTAAGCCGGGGATCGGCTCGGTCCCCTCTGCGTGTTATCGATCCTGCTGTTG
131 AGAGGCAAAATGTGCAAGCCAGGGACCAACCCGATCCCCTCTGCGTGCTATCGATCCTGCTGTTG
14897297 G
196 G
* * *
14897298 TCCTGCTGTCACAAGCCTCTGTCCGG-TCTGATCTTAGACTG-GTAATGAACTCCGTATGCTTAG
1 TCCTACTGTCACAACCCTCAGTCCGGTTC-GATCTTAGACTGTG-AATGAACTCCGTATGCTTAG
* *
14897361 ACAT-GGAATGAACTCTGTATGCTTAAGCCAACCCATGAAACGAGCATGTGGGCACTCAGC-CGA
64 AC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCTCGA
* *
14897424 CCGGAGAGGCAAAATGTGCAAGCCAGGGACCAACCCGAT-CCCTCCTGCGTGCTGTCGATCCT
128 -CGAAGAGGCAAAATGTGCAAGCCAGGGACCAACCCGATCCCCT-CTGCGTGCTATCGATCCT
14897486 ACTGCCACAA
Statistics
Matches: 160, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
195 9 0.06
196 150 0.94
197 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
TCCTACTGTCACAACCCTCAGTCCGGTTCGATCTTAGACTGTGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCTCGACGA
AGAGGCAAAATGTGCAAGCCAGGGACCAACCCGATCCCCTCTGCGTGCTATCGATCCTGCTGTTG
G
Found at i:14897783 original size:159 final size:156
Alignment explanation
Indices: 14897355--14897784 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 156
14897345 AACTCCGTAT
* *
14897355 GCTTAGACATGGAATGAACTCTGTATGCTTAAGCCAACCCATGAAACGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAG-CAACCCATGAAACGAGCGTGTGGGCACTCAG
* * * * *
14897420 CCGACCGGAGAGGCAAAATGTGCAAGCCAGGGACCAACCCGATCCCTCCTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGACCAGCCCGATCCC-CCTACGTGATGTCGATCC
* *
14897485 TACTGCCACAACCCTCGGTCCGGTCTGA
129 CACTGCCACAACCCTCGATCCGGTCTGA
* * * * * * * *
14897513 TCTTAGAC-TGGGAATGAACTACGTATGCTTAAGTCAACCCATGAAACAATCGTTTAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCTTAAG-CAACCCATGAAACGAGCGTGTGGGCACTCA
** * * * * *
14897577 GCTAGCCGAAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGATCCCCCTTTATGTGATGTCGAT
64 GCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGACCAGCCCGATCCCCC--TACGTGATGTCGAT
*
14897642 CCCGCTGCCACAACCCTCGATCCGG-CTGA
127 CCCACTGCCACAACCCTCGATCCGGTCTGA
* * * * *
14897671 GGGTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAACGGGCGTGTGGGCACTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCTTAAGC-AACCCATGAAACGAGCGTGTGGGCACTCA
* * * * * * *
14897736 GCCGGCCGGAGAGGCAGAATGCCCTAGCCAAGGATCAGCTCGGTCCCCC
64 GCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGACCAGCCCGATCCCCC
14897785 CTGCATGCTG
Statistics
Matches: 215, Mismatches: 51, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 94 0.44
159 117 0.54
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCAACCCATGAAACGAGCGTGTGGGCACTCAGC
CGGCCGGAGAGGCAAAATGCGCAAGCCAGGGACCAGCCCGATCCCCCTACGTGATGTCGATCCCA
CTGCCACAACCCTCGATCCGGTCTGA
Found at i:14897867 original size:26 final size:26
Alignment explanation
Indices: 14897831--14897881 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14897821 CCGATCCGAT
* *
14897831 CTTAGATTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
14897857 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14897882 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14898241 original size:26 final size:26
Alignment explanation
Indices: 14898212--14898264 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14898202 CCGATCCGAT
14898212 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACGT-GGAATGAACTCCGTATG
14898238 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
14898264 C
1 C
14898265 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCGTATG
Found at i:14898697 original size:26 final size:26
Alignment explanation
Indices: 14898668--14898720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14898658 CCGGTCCGAT
14898668 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
**
14898694 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
14898720 C
1 C
14898721 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:14899724 original size:26 final size:26
Alignment explanation
Indices: 14899674--14899726 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14899664 CCGGTTTGAT
*
14899674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* * *
14899700 CTTAGACTGGGGATGTACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14899726 C
1 C
14899727 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:14899901 original size:26 final size:26
Alignment explanation
Indices: 14899872--14899924 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14899862 CCGGTCCGAT
14899872 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14899898 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14899924 C
1 C
14899925 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14900190 original size:158 final size:158
Alignment explanation
Indices: 14899898--14900192 Score: 366
Period size: 158 Copynumber: 1.9 Consensus size: 158
14899888 ACTCCGTATG
* * *
14899898 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACAACCATACGGGTGCTCAGC
*** * *
14899963 TGGTCGGAGAGGAAAAATGCACAAGCCATGGATCGACCCGGTCCCCCCAGCGTGCTGTCGATCCT
66 TAACCGGAGAGGAAAAATGCACAAGCCATGGATAGACCCGGTCCCCCCAGCGTGCTGTCGATCCC
14900028 ACTGTCGCAACCCTCGATCCGATCTGAT
131 ACTGTCGCAACCCTCGATCCGATCTGAT
* * *
14900056 CTTAGAC-TGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACAACCATTCGGGCT-CTGA
1 CTTAGACAT-GGAATGAACACCGTATGCCTAAGCCAACCCACGAAACAACCATACGGG-TGCTCA
* * * * *
14900119 G-TCAACCGGAGAGGCATAATGCCCAAGCCATTGATA-AGCCCGGTCCCCTCTA-CGTGCTGTCG
64 GCT-AACCGGAGAGGAAAAATGCACAAGCCATGGATAGA-CCCGGTCCCC-CCAGCGTGCTGTCG
14900181 ATCCCACTGTCG
126 ATCCCACTGTCG
14900193 GTCTTGCTGC
Statistics
Matches: 116, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
157 3 0.03
158 110 0.95
159 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACAACCATACGGGTGCTCAGC
TAACCGGAGAGGAAAAATGCACAAGCCATGGATAGACCCGGTCCCCCCAGCGTGCTGTCGATCCC
ACTGTCGCAACCCTCGATCCGATCTGAT
Found at i:14900938 original size:26 final size:26
Alignment explanation
Indices: 14900897--14900949 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14900887 CCAATCTGAT
*
14900897 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14900923 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14900949 C
1 C
14900950 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14901957 original size:26 final size:26
Alignment explanation
Indices: 14901921--14901973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14901911 CTAGTTTGAT
*
14901921 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14901947 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14901973 C
1 C
14901974 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14902473 original size:26 final size:26
Alignment explanation
Indices: 14902444--14902496 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14902434 CCGATTTGAT
14902444 CTTAAACTGG-GAATAAACTCCGTATG
1 CTTAAACTGGAG-ATAAACTCCGTATG
* *
14902470 CTTAGACTGGAGATAAACTTCGTATG
1 CTTAAACTGGAGATAAACTCCGTATG
14902496 C
1 C
14902497 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGAGATAAACTCCGTATG
Found at i:14903161 original size:32 final size:32
Alignment explanation
Indices: 14903103--14903169 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
14903093 CGAGCCCAGC
14903103 ATGTGCATCGTGGCTCAAACTCTTAGACTGAGA
1 ATGTGCATCGTGGCTCAAACTCTTAGAC-GAGA
14903136 ATGTGCATCGTGGCTC-AACTCTTAGACGAGA
1 ATGTGCATCGTGGCTCAAACTCTTAGACGAGA
14903167 ATG
1 ATG
14903170 AAACTCCGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 7 0.21
32 11 0.32
33 16 0.47
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (32 bp):
ATGTGCATCGTGGCTCAAACTCTTAGACGAGA
Found at i:14904584 original size:26 final size:26
Alignment explanation
Indices: 14904555--14904607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14904545 CCGGTCTGAT
14904555 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
14904581 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14904607 C
1 C
14904608 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14905327 original size:26 final size:25
Alignment explanation
Indices: 14905289--14905340 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14905279 GGCTCAAAAT
14905289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCC-TATG
*
14905315 CTTAGACTTGGAATGAACTCCTATG
1 CTTAGACTGGGAATGAACTCCTATG
14905340 C
1 C
14905341 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:14905775 original size:157 final size:158
Alignment explanation
Indices: 14905314--14905922 Score: 399
Period size: 157 Copynumber: 3.9 Consensus size: 158
14905304 AACTCCGTAT
* * * * * *
14905314 GCTTAGACTTGGAATGAACTC-CTATGCCTAAGCTAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
* ** * * * * * ** * * **
14905378 TCGGCCAGAGAGGCAGAATGCACAAGCAGGGTATCGGTTCGGTCACCCCCTGTGTGCTGTCGATC
66 CCAACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGATC-CCCCCTGCGTGCTACCGATC
* ** * * *
14905443 TTGCTACCACAACCCTCTGTCCGGTCCGA
130 CTGCTACCGTAACCCTCGGTCAGCTCCGA
* * * * * ** * * * * * *
14905472 TCTTAGACTGGCATTGAACTTTGTACGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
* * * * * * * * ** **
14905537 CCGACCGAAGAGGCATAATGCGCAAGCTGAGGA-CCGCCCGGTCCCCCTCTATGTGCTGTC-AGT
66 CCAACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCCCC-CTGCGTGCTACCGA-T
* * ** * *
14905600 CCCGCTGCC--ACATACTCGGTCTAGCT-GGG
129 CCTGCTACCGTA-ACCCTCGGTC-AGCTCCGA
* * *
14905629 GCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTT
1 GCTTAGAC-TGGGAATGAACT-CTGTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGTGCTC
* * * *
14905692 AGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTGCGTGCTATCGAT
64 AGCCAACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGAT
* *
14905756 CCTGCTACCGTAACCCTCGGTCCGGTCCGA
129 CCTGCTACCGTAACCCTCGGTCAGCTCCGA
* * **
14905786 TCTTAGACTGGGAATGAACTCTGTATGCCGAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
* * * * * *
14905851 TCAATCGGAGAGGCAGAATGTGCAAATCGGGGATCGGCCCGATCCCCCCCTTCGTGCTGCCGATC
66 CCAACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGAT-CCCCCCTGCGTGCTACCGATC
14905916 CTGCTAC
130 CTGCTAC
14905923 TAGTCCTGCT
Statistics
Matches: 351, Mismatches: 84, Indels: 31
0.75 0.18 0.07
Matches are distributed among these distances:
156 23 0.07
157 192 0.55
158 53 0.15
159 83 0.24
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCGAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
CCAACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
TGCTACCGTAACCCTCGGTCAGCTCCGA
Found at i:14906000 original size:26 final size:26
Alignment explanation
Indices: 14905958--14906010 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14905948 CCGATCCGAT
*
14905958 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14905984 CTTAGACAT-GGAGTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14906010 C
1 C
14906011 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14906330 original size:26 final size:26
Alignment explanation
Indices: 14906301--14906353 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14906291 CCAGTCTGAT
14906301 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
14906327 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
14906353 C
1 C
14906354 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:14913141 original size:26 final size:26
Alignment explanation
Indices: 14913112--14913163 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14913102 TCCGATCTGA
*
14913112 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAAACTGGGAATGAACTCCGTAT
*
14913138 TCTTAAACTGGGGATGAACTCCGTAT
1 TCTTAAACTGGGAATGAACTCCGTAT
14913164 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAAACTGGGAATGAACTCCGTAT
Found at i:14913290 original size:12 final size:12
Alignment explanation
Indices: 14913269--14913311 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
14913259 CCCCTCTGCG
*
14913269 TGCTGTCGATCC
1 TGCTGCCGATCC
*
14913281 CGCTGCCGATCC
1 TGCTGCCGATCC
*
14913293 TGCTGCCAATCC
1 TGCTGCCGATCC
14913305 TGCTGCC
1 TGCTGCC
14913312 ACAACCCTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.09, C:0.42, G:0.23, T:0.26
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:14913553 original size:26 final size:26
Alignment explanation
Indices: 14913503--14913555 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14913493 CCGGTCTGAT
**
14913503 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14913529 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14913555 C
1 C
14913556 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.