Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 116 of 402
Found at i:14914038 original size:26 final size:26
Alignment explanation
Indices: 14914002--14914054 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14913992 TCGGTCCAAT
* *
14914002 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTATATG
* *
14914028 CTTAGATTGGGGATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCTATATG
14914054 C
1 C
14914055 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTATATG
Found at i:14914763 original size:26 final size:25
Alignment explanation
Indices: 14914724--14914773 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
14914714 GGCTCAAACT
14914724 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
14914749 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGAC-TGGAATGAACTCCGTAT
14914774 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:14914987 original size:159 final size:158
Alignment explanation
Indices: 14914748--14915053 Score: 416
Period size: 159 Copynumber: 1.9 Consensus size: 158
14914738 AACTCCGTAT
* *
14914748 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAACCACGAAACGAGCGTGCAGGCACTGAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCACGAAACGAGCGTGCAGGCACTCAG
** *
14914813 TCGGTCAGAGAGGCAGAATGCACAAGCCAGGGATCGCCCCGATCCCCCTTTGCGTACTTCCAATC
66 TCGGTCAGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGATCCCCC-TTGCGTACTGCCAATC
14914878 CCGCTACCACAACCCTCGGTCTGGCTGGG
130 CCGCTACCACAACCCTCGGTCTGGCTGGG
* * * * * * * *
14914907 GCTTAGACATGTAATGAACTCCCTTTGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCACGAAACGAGCGTGCAGGCACTCAG
** * * *
14914972 TCGGTC-GAAGAGGCAGAATGCGTAAGCTAGGGATCAACCCGGTCCCCCTTGCGTGCTGCCAATC
66 TCGGTCAG-AGAGGCAGAATGCACAAGCCAGGGATCAACCCGATCCCCCTTGCGTACTGCCAATC
*
14915036 CTGCTACCACAACCCTCG
130 CCGCTACCACAACCCTCG
14915054 ATCCACTCTA
Statistics
Matches: 127, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 32 0.25
159 95 0.75
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAACCACGAAACGAGCGTGCAGGCACTCAG
TCGGTCAGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGATCCCCCTTGCGTACTGCCAATCC
CGCTACCACAACCCTCGGTCTGGCTGGG
Found at i:14915096 original size:26 final size:26
Alignment explanation
Indices: 14915066--14915118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14915056 CCACTCTAAT
*
14915066 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14915092 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14915118 C
1 C
14915119 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14916851 original size:26 final size:26
Alignment explanation
Indices: 14916800--14916852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14916790 CCGGTTCGAT
* *
14916800 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACATATG
*
14916826 CTTAGACTAGGGATGAACTACATATG
1 CTTAGACTAGGAATGAACTACATATG
14916852 C
1 C
14916853 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACATATG
Found at i:14917240 original size:159 final size:156
Alignment explanation
Indices: 14916907--14917499 Score: 544
Period size: 159 Copynumber: 3.7 Consensus size: 156
14916897 AGAGGCCTGT
* ** * * *
14916907 CGGAGAGGCAGAATGTGCAAGCTGGGGATCGACCTGGTCCCCCTCTGCATGCTGTCGATCCTGCT
1 CGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTGCATGCTGTCGATCCTGCT
* * * * *
14916972 GCCCCAACCCTCGATCTGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCA
65 GCCGCAACCCTCGATC-CGTCCGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCCA
* * * *
14917037 CGAAACGAGCGTACGGGTGCTCAGTCGGT
128 CGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * *
14917066 CGGAAAGGCAAAATGCACAAGTCGGGGATCGACCC-AGTCCCCCCATGCGTGAC-GTCGATCCTG
1 CGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGA-TCCCCCC-TGCATG-CTGTCGATCCTG
* * * *
14917129 CTACCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
63 CTGCCGCAACCCTCGATCC-GTCCGATCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACC
* * *
14917194 CAGGAAACGAGCGTGCGGGCGCTGAGCCGAC
126 CACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * * *** * **
14917225 CGGAGAGGTATAATGCGCAAGCCGGAGATCGGCCCGATCCCCCTTTACGTGCCACCGGTCCCACT
1 CGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTGCATGCTGTCGATCCTGCT
* * * * * **
14917290 GCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCAT-TATGCCTAAGCCAACCC
65 GCCGCAACCCTCGATCCGTC-CGATCTTAGAC-TGGAATGAACTC-TGTATGCCTAAGCCAACCC
* * *
14917354 ATGAAACGGGCGTGCGGGCGCTCAACCGGC
127 ACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *
14917384 CAGAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGATCCCTCCTGCATGCTGTCGATCCTGCTG
1 CGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTG
*
14917449 TCGCAACCCTCGATCCGATCCGATCTTAGACTGGATATGAACTCTGTATGC
66 CCGCAACCCTCGATCCG-TCCGATCTTAGACTGGA-ATGAACTCTGTATGC
14917500 TTAGACTGGG
Statistics
Matches: 344, Mismatches: 77, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.01
158 51 0.15
159 284 0.83
160 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
CGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTG
CCGCAACCCTCGATCCGTCCGATCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGC
Found at i:14917514 original size:26 final size:26
Alignment explanation
Indices: 14917473--14917525 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14917463 CCGATCCGAT
* *
14917473 CTTAGACTGGATATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
*
14917499 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
14917525 C
1 C
14917526 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:14918719 original size:12 final size:12
Alignment explanation
Indices: 14918704--14918729 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14918694 GATCCCACTA
14918704 CCGGTCCTGCTG
1 CCGGTCCTGCTG
14918716 CCGGTCCTGCTG
1 CCGGTCCTGCTG
14918728 CC
1 CC
14918730 ACAACCCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23
Consensus pattern (12 bp):
CCGGTCCTGCTG
Found at i:14918932 original size:26 final size:26
Alignment explanation
Indices: 14918894--14918946 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14918884 CCGGTCTGAT
14918894 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
14918920 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
14918946 C
1 C
14918947 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:14919426 original size:26 final size:26
Alignment explanation
Indices: 14919397--14919449 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14919387 CCGGTCTAAT
*
14919397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14919423 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14919449 C
1 C
14919450 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14919802 original size:184 final size:184
Alignment explanation
Indices: 14919612--14919975 Score: 460
Period size: 184 Copynumber: 2.0 Consensus size: 184
14919602 TGGTCTTTAA
* * * * *
14919612 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGC-AGGTGCTTAGCCGGC
1 ACATGGAAAGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACATGCGA-GCGCTCAGCCGAC
* * * * * * ** *
14919676 CGGAGAGGCAGAATGCGTAAGTCGATGATTGGCTCGGTCCCCCCTGTATGCTGCCAATCTTGCTA
65 CGGAGAGGCAGAAAGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTGCCAATCCTGCTA
* * * *
14919741 CCGTAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTGAG
130 CCGCAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTGAG
* *
14919796 ACATGGAAAGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCGACC
1 ACATGGAAAGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACATGCGAGCGCTCAGCCGACC
* * * * *
14919861 GGAGAGGCAGAAAGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGC
66 GGAGAGGCAGAAAGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTGCCAATCCTGCTAC
* * *
14919926 TGCAATCTTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGC
131 CGCAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGC
14919976 CTAAGTCAAA
Statistics
Matches: 151, Mismatches: 28, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
184 150 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (184 bp):
ACATGGAAAGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACATGCGAGCGCTCAGCCGACC
GGAGAGGCAGAAAGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTGCCAATCCTGCTAC
CGCAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTGAG
Found at i:14920138 original size:159 final size:158
Alignment explanation
Indices: 14919794--14920255 Score: 536
Period size: 158 Copynumber: 2.9 Consensus size: 158
14919784 CCGTATGCTG
* * * * * *
14919794 AGACATGGAAAGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGA
* * *
14919859 CCGGAGAGGCAGAAAGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCT
66 CTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCT
* ** * * * *
14919924 GCTGCAATCTTCGGTCTGATCTGATCTT
131 ACCACAACCCTCGGTCCGATCTGAGCTT
* * * *
14919952 AGAC-TAGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTTCGGGTGCTAAGCCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCG
* * * * * * *
14920016 ACTGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCTTCTGCGTGCTGTCGATCCCG
65 ACTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCC-CCTACGTGCTGTCGATCCTG
*
14920081 CTACCACAACCCTCGGTCCGA-CTGGGGCTT
129 CTACCACAACCCTCGGTCCGATCT-GAGCTT
* *
14920111 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTACGGGTGCTCAGCTG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTACGGGTGCTCAGCCG
* * * * *
14920175 A-TCGGAAAGGCAGAATACGTAAGTCGGGGATCGACCCAATCCCCCCTACGTGCTGTCGATCCTA
65 ACT-GGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTG
14920239 CTACCACAACCCTCGGT
129 CTACCACAACCCTCGGT
14920256 ATGCTTAAAC
Statistics
Matches: 253, Mismatches: 45, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 127 0.50
159 124 0.49
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGA
CTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCT
ACCACAACCCTCGGTCCGATCTGAGCTT
Found at i:14920284 original size:26 final size:26
Alignment explanation
Indices: 14920255--14920311 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
14920245 CAACCCTCGG
14920255 TATGCTTAAACTAGGGATGAACTCTA
1 TATGCTTAAACTAGGGATGAACTCTA
* *
14920281 TATGCTTAGACTAGGGATGAACTCTG
1 TATGCTTAAACTAGGGATGAACTCTA
14920307 TATGC
1 TATGC
14920312 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
TATGCTTAAACTAGGGATGAACTCTA
Found at i:14920669 original size:158 final size:157
Alignment explanation
Indices: 14920356--14920697 Score: 384
Period size: 158 Copynumber: 2.2 Consensus size: 157
14920346 TGCCGATTCC
* * *
14920356 ACTGTCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
1 ACTGTCGGTCCTGCTGCCATAACCCTAGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
** ** * *
14920421 GCCTAAGCCAACCCGTGAAATGAGCGTACGGATGCTCAGCCGGTCGGAGAGGCAAAATGTGCAAG
66 GCCTAAGCCAACCCACGAAATGAGCGTACGGA-GCTCAGCCGACCGAAAAGGCAAAATGTGCAAG
* *
14920486 CCGGGGATTGACCTGGTCCCCCCTGCAT
130 CCGGGGATCGACCCGGTCCCCCCTGCAT
* * * *
14920514 ACTGTCGGTCCCGCTGCCATAACCCTAGCTTCGACTGGGTCTTAGACATGGAATGAACTCCCTAT
1 ACTGTCGGTCCTGCTGCCATAACCCTAGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * *
14920579 GCCTAAGCCAACCCACGAAAT-AGACGTGCAGGCA-CTTAGCCGACCGAAAAGGCAGAAT-TCGC
66 GCCTAAGCCAACCCACGAAATGAG-CGTAC-GG-AGCTCAGCCGACCGAAAAGGCAAAATGT-GC
* ** *
14920641 AAGTCGGGGATCGACCCGGTCCTTCCTGCGT
127 AAGCCGGGGATCGACCCGGTCCCCCCTGCAT
* * * *
14920672 GCTGTCGATCCTGCTGTCGTAACCCT
1 ACTGTCGGTCCTGCTGCCATAACCCT
14920698 CGGTCCAGTT
Statistics
Matches: 153, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
157 3 0.02
158 147 0.96
159 2 0.01
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
ACTGTCGGTCCTGCTGCCATAACCCTAGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAATGAGCGTACGGAGCTCAGCCGACCGAAAAGGCAAAATGTGCAAGC
CGGGGATCGACCCGGTCCCCCCTGCAT
Found at i:14921640 original size:26 final size:26
Alignment explanation
Indices: 14921604--14921682 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
14921594 CTGGTCTGAT
* *
14921604 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
14921630 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
14921656 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
14921682 C
1 C
14921683 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:14922495 original size:26 final size:26
Alignment explanation
Indices: 14922457--14922509 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14922447 CTGGTCTGAT
** *
14922457 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
14922483 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
14922509 C
1 C
14922510 CTAAGCTTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:14922670 original size:26 final size:26
Alignment explanation
Indices: 14922641--14922693 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14922631 CCGATCCGAT
14922641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14922667 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14922693 C
1 C
14922694 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14923061 original size:170 final size:168
Alignment explanation
Indices: 14922667--14923216 Score: 491
Period size: 169 Copynumber: 3.3 Consensus size: 168
14922657 ACTCCGTATG
* ** * * *
14922667 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACAAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAGC
* * * * * * * * *
14922732 CAGTCGGAGAAGCATAATGCACAAGTCAGGGATCC--ATCGGTCCCCCTCTATATGCTGCCGATC
65 CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGA-CCGGCTCGGTCCCCC-CTGTGTGCTGTCGATC
* * * * * *
14922795 CCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGT
128 CTGCTACCGGTCCTGCTACCACAACCCTCAGTCCGATCGAT
* * * *
14922836 GTTAGACATGGAATAAACTCCGTATACCTAAGCCAACCCATGAAATGAGCGTGCAGGAGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAGC
*
14922901 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCTCGGTCCCCCCTGTGTGCTGTCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGGCTCGGTCCCCCCTGTGTGCTGTCGATCCT
* * *
14922966 GCTACTGGTCCTGCTACTACAACCCTCAGTCTGATCCGAT
130 GCTACCGGTCCTGCTACCACAACCCTCAGTCCGAT-CGAT
* * * * *
14923006 CTTAGACTGTGAATGAACTACGTATGCCTAAGCCAACCGACGAAATAAGCGTGCAGGTGCTCAAC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAGC
* * * * * * * * * *
14923071 TGGCCAGAGAGGTAGAATCCGTAAGCCAGGGATCGGCCCGAT-CCCCCTGTGTGCTATCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGGCTCGGTCCCCCCTGTGTGCTGTCGATCCT
*
14923135 GCTA-----CC-G-T-----AACCCTCGGTCCGATCCGAT
130 GCTACCGGTCCTGCTACCACAACCCTCAGTCCGAT-CGAT
* ** *
14923163 CTTAGACGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGCA
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCA
14923217 AGCGCTGAGC
Statistics
Matches: 318, Mismatches: 58, Indels: 23
0.80 0.15 0.06
Matches are distributed among these distances:
156 39 0.12
157 26 0.08
162 1 0.00
163 1 0.00
164 2 0.01
168 2 0.01
169 149 0.47
170 98 0.31
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (168 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGTCAGGGACCGGCTCGGTCCCCCCTGTGTGCTGTCGATCCTG
CTACCGGTCCTGCTACCACAACCCTCAGTCCGATCGAT
Found at i:14923520 original size:26 final size:26
Alignment explanation
Indices: 14923479--14923531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14923469 CCGATCCGAT
14923479 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
14923505 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14923531 C
1 C
14923532 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14923898 original size:26 final size:26
Alignment explanation
Indices: 14923860--14923912 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14923850 TCGGTCCAAT
*
14923860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
14923886 CTTAGACAT-GGAATCAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
14923912 C
1 C
14923913 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:14924147 original size:185 final size:185
Alignment explanation
Indices: 14923828--14924256 Score: 569
Period size: 185 Copynumber: 2.3 Consensus size: 185
14923818 TTGTTGTTGG
*
14923828 TCCTGCTATCGTAACCCTTAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGTAACCCTTAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* **
14923893 ATGGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCTCAGTCGATTGG
66 ATGGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGACCGG
* * *
14923958 AGAGGCAGAATTCACAAGCCGGGGACCGGC-CAGGT-CCACCCCTGCGTTCTGTCGA
131 AGAGGCAGAATGCACAAGCCGGGGACCGACTC-GGTGCC-CCCCTGCGTGCTGTCGA
* * * *
14924013 TCCTGCTACCGTAACCCTCAG-TCTGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGA
1 TCCTGCTACCGTAACCCTTAGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * ** * * * *
14924077 GATGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTGCGGGCGCTTAGCCGACCG
65 CATGGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGACCG
* ** * *
14924142 GAGAGGTAGAATGCGTAAGTCGGGGATCGACTCGGTGCCCCCCTGCGTGCTGTCGA
130 GAGAGGCAGAATGCACAAGCCGGGGACCGACTCGGTGCCCCCCTGCGTGCTGTCGA
*
14924198 TCCTGCTACCTTAACCCTTAGTTCGGTCCAATCTTAGA-TCGGGAATGAACTCCGTATGC
1 TCCTGCTACCGTAACCCTTAGTTCGGTCCAATCTTAGACT-GGGAATGAACTCCGTATGC
14924257 CTAAGTCAAC
Statistics
Matches: 210, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
184 3 0.01
185 202 0.96
186 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (185 bp):
TCCTGCTACCGTAACCCTTAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCTCAGCCGACCGG
AGAGGCAGAATGCACAAGCCGGGGACCGACTCGGTGCCCCCCTGCGTGCTGTCGA
Found at i:14924365 original size:159 final size:159
Alignment explanation
Indices: 14924080--14924366 Score: 398
Period size: 159 Copynumber: 1.8 Consensus size: 159
14924070 GCTTAGAGAT
* *
14924080 GGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTGCGGGCGCTTAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAG
* ** * ** * * *
14924145 AGGTAGAATGCGTAAGTCGGGGATCGACTCGGTGCCCCCCTGCGTGCTGTCGATCCTGCTACCTT
66 AGGTAGAATGCGTAAGCCAAGGATCGACCCAATGCCCCCCTACGTGCTGCCGATCCCGCTACCTT
14924210 AACCCTTAGTTCGGTCCAATCTTAGATCG
131 AACCCTTAGTTCGGTCCAATCTTAGATCG
* *
14924239 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAG
* * *
14924304 AGGTATAATGCGTAAGCCAAGGATCGGCCCAAT-CCCCGTCTACGTGCTGCC-AGTCCCGCTACC
66 AGGTAGAATGCGTAAGCCAAGGATCGACCCAATGCCCC-CCTACGTGCTGCCGA-TCCCGCTACC
14924367 ACAATGCTCG
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
158 5 0.05
159 105 0.95
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAG
AGGTAGAATGCGTAAGCCAAGGATCGACCCAATGCCCCCCTACGTGCTGCCGATCCCGCTACCTT
AACCCTTAGTTCGGTCCAATCTTAGATCG
Found at i:14924393 original size:159 final size:159
Alignment explanation
Indices: 14924070--14924492 Score: 397
Period size: 159 Copynumber: 2.7 Consensus size: 159
14924060 AACTCCATAT
* * * *
14924070 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * *
14924135 CCGACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGACTCGGTGCCCCCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGTAAAATGCGTAAGCCGAGGATCGGCCCAATGCCCCCCTACGTGCTGCCGATC
* ** *
14924200 CTGCTACCTTAACCCTTAGTTCGGTCCAA
131 CCGCTACCACAACCCTTAGATCGGTCCAA
* * * *
14924229 TCTTAGATC-GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGA-CAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
14924293 GCCGACCGGAGAGGTATAATGCGTAAGCCAAGGATCGGCCCAAT-CCCCGTCTACGTGCTGCC-A
65 GCCGACCGGAGAGGTAAAATGCGTAAGCCGAGGATCGGCCCAATGCCCC-CCTACGTGCTGCCGA
** * * *
14924356 GTCCCGCTACCACAATGC-TCGATCTGG-CTAGG
129 -TCCCGCTACCACAACCCTTAGATC-GGTCCA-A
* * * * * * * *
14924388 GCTTAGACATGTAATGAACACCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14924453 CCGACCGAAAAGGCAAAATGCGTAAGCCGAGGATCAGCCC
66 CCGACCGGAGAGGTAAAATGCGTAAGCCGAGGATCGGCCC
14924493 GGTCCCCCTG
Statistics
Matches: 213, Mismatches: 45, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
158 12 0.06
159 201 0.94
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGTAAAATGCGTAAGCCGAGGATCGGCCCAATGCCCCCCTACGTGCTGCCGATC
CCGCTACCACAACCCTTAGATCGGTCCAA
Found at i:14924575 original size:26 final size:26
Alignment explanation
Indices: 14924546--14924598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14924536 TCGGTCCGAT
*
14924546 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14924572 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14924598 C
1 C
14924599 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14925079 original size:196 final size:197
Alignment explanation
Indices: 14924743--14925137 Score: 499
Period size: 196 Copynumber: 2.0 Consensus size: 197
14924733 CCGAGTAGGG
* * *
14924743 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCATGCGAGAGCTCAGC
* * * * * *
14924808 CGACCGGAGAGGCAGAATGCACAAGTCGGGTATTGGCTCGATCCCCCCTACGTGCTACCAATCTT
66 CGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCAATCTT
* * *
14924873 GCTGCTGGTCCTGCTATCGCAACCCTCTA-TCCAATCCGATCTAAGACTGGGAATGAACTCCGTA
131 GCTACTGGTCCTGCTACCGCAACCCTC-AGTCCAATCCGATCTAAGACTGGGAATGAACTACGTA
14924937 -GC
195 TGC
* * * *
14924939 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAGC
1 CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCATGCGAGAGCTCAGC
* * ** * * * *
14925004 TGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCCTGCATGGTGCCAATC-
66 CGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGAT-CCCCCCTACATGCTACCAATCT
* * * *
14925068 TGCTACTGGTCCTGCTACCGCAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTACGTA
130 TGCTACTGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTAAGACTGGGAATGAACTACGTA
14925133 TGC
195 TGC
14925136 CT
1 CT
14925138 AAGCCAACTC
Statistics
Matches: 168, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
195 1 0.01
196 146 0.87
197 21 0.12
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (197 bp):
CTTAGACACGGAATGAACTCCATATGCCTAAGCCAACACACGAAACGAGCATGCGAGAGCTCAGC
CGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCAATCTT
GCTACTGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTAAGACTGGGAATGAACTACGTAT
GC
Found at i:14925223 original size:367 final size:366
Alignment explanation
Indices: 14924540--14925221 Score: 840
Period size: 367 Copynumber: 1.9 Consensus size: 366
14924530 CTCGGTTCGG
* * ** *
14924540 TCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGC
* * * * *
14924605 CAACCAATGAAACAAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCATAATGCGTAAGCCGAGGAT
66 CAACCAATGAAACAAGCATACGGGAGCTCAGTCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGAT
* *** * * * *
14924670 TGGCCCAGTCCCTGTCTGCGTGCTGTCGATCCCACTGTCGGTCCTACTGCCACAACCCTCAATCC
131 CGGCCCAGTCCCCCCCTGCATGCTGCCAATCCCAC-GTCGGTCCTACTACCACAACCCTCAATCC
* *
14924735 GAGTAGGGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGAG
195 GAGTAGAGCTTAGACACGGAATGAACTACGTATGCCTAAGCCAACACACGAAACGAGCGTGCGAG
* *
14924800 CGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCGGGTATTGGCTCGATCCCCCCTACGTGCTA
260 CGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGGGTATCGGCTCGATCCCCCCTACGTGCTA
14924865 CCAATCTTGCTGCTGGTCCTGCTATCGCAACCCTCTATCCAA
325 CCAATCTTGCTGCTGGTCCTGCTATCGCAACCCTCTATCCAA
14924907 TCCGATCTAAGACTGGGAATGAACTCCGTA-GCCTTAGACAT-GGAATGAACTCCATATGCCTAA
1 TCCGATCTAAGACTGGGAATGAACTCCGTATG-CTTAGAC-TGGGAATGAACTCCATATGCCTAA
* * * *
14924970 GCCAACCCATGAAACGAGCATGCGGGAGCTCAG-CTGGCCAGAGAGGCAGAATGCGTAAGCCGGG
64 GCCAACCAATGAAACAAGCATACGGGAGCTCAGTC-GGCCAGAGAGGCAGAATGCGTAAGCCGAG
* * * * *
14925034 GATCGGCCCGGTCCCCCCCTGCATGGTGCCAATCTGCTAC-T-GGTCCTGCTACCGCAACCCTCA
128 GATCGGCCCAGTCCCCCCCTGCATGCTGCCAATC--CCACGTCGGTCCTACTACCACAACCCTCA
* * * *** *
14925097 GTCCGA-TCTGATCTTAGATTGGGAATGAACTACGTATGCCTAAGCCAACTCACGAAACGAGCGT
191 ATCCGAGT-AGAGCTTAGACACGGAATGAACTACGTATGCCTAAGCCAACACACGAAACGAGCGT
* * * * *
14925161 GCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCACAAGTCAGGG-ATC-GATCCGATCCCCCC
255 GCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTC-GGGTATCGGCT-CGATCCCCCC
14925222 CTGTGTGCTG
Statistics
Matches: 264, Mismatches: 43, Indels: 17
0.81 0.13 0.05
Matches are distributed among these distances:
365 3 0.01
366 121 0.46
367 136 0.52
368 1 0.00
369 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (366 bp):
TCCGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGC
CAACCAATGAAACAAGCATACGGGAGCTCAGTCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGAT
CGGCCCAGTCCCCCCCTGCATGCTGCCAATCCCACGTCGGTCCTACTACCACAACCCTCAATCCG
AGTAGAGCTTAGACACGGAATGAACTACGTATGCCTAAGCCAACACACGAAACGAGCGTGCGAGC
GCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGGGTATCGGCTCGATCCCCCCTACGTGCTAC
CAATCTTGCTGCTGGTCCTGCTATCGCAACCCTCTATCCAA
Found at i:14925366 original size:159 final size:159
Alignment explanation
Indices: 14925077--14925624 Score: 444
Period size: 159 Copynumber: 3.5 Consensus size: 159
14925067 CTGCTACTGG
* * *
14925077 TCCTGCTACCGCAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTACGTATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
* * * * **
14925142 CAACTCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCAGAATGCACAAGTCAGGGAT
66 CAACCCACAAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGTCAGGGAT
* *
14925207 CGATCCGATCCCCCCCTGTGTGCTGTCGA
131 CGACCCGATCCCCCCCTATGTGCTGTCGA
* * * * * *
14925236 TCCTGCTGCTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGT
1 TCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
* * * * *
14925301 CAACCCACAAAACGAGGGTGCAGGCGTTGAGCCAGCC-GAAGAGGCATAATG-ATTAAGTCAGGG
66 CAACCCACAAAACGAGCGTGCAGGCGCTCAGCCAGCCAG-AGAGGCAGAATGCA-CAAGTCAGGG
* * *
14925364 ATCTACCCGATCCCCCTCTATGTGCTGTCGG
129 ATCGACCCGATCCCCCCCTATGTGCTGTCGA
* * ** * *
14925395 TCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
1 TCCTGCTGCCGCAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTACGTATGCCTAA
* * * * * * * * * * *** *
14925458 GCCAACACACGAAATGGGTGTACGGGCACTCAACCGGTTGGAGAGGCAGAATGCATAAGTC-GGA
64 GCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGTCAGG-
* * * * * *
14925522 GATCGGCCCGGT-CCCCCTTACGTGTTGCCGA
128 GATCGACCCGATCCCCCCCTATGTGCTGTCGA
* ** * ** * * * * *
14925553 T-CTTCTATCGCAACCCTCGGTCCGGTCCAATATTAGATTGGGGATGAACTTCGTATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
14925617 CAACCCAC
66 CAACCCAC
14925625 GAAATGAGTA
Statistics
Matches: 304, Mismatches: 76, Indels: 20
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 50 0.16
158 21 0.07
159 229 0.75
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (159 bp):
TCCTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
CAACCCACAAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGTCAGGGAT
CGACCCGATCCCCCCCTATGTGCTGTCGA
Found at i:14926115 original size:26 final size:26
Alignment explanation
Indices: 14926086--14926138 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14926076 CCGGCCCGAT
14926086 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
14926112 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14926138 C
1 C
14926139 CTAAACCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14926213 original size:184 final size:179
Alignment explanation
Indices: 14925891--14926429 Score: 462
Period size: 172 Copynumber: 3.0 Consensus size: 179
14925881 TAACCATCGA
* * * * * *
14925891 TCCAGTCCGATCTTAGACTGAGAATGAACTCTGTATACATAGAC-TGGGGATGAACTCTGTATGC
1 TCCAGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCTGTATGC
* * ** * ** * *
14925955 TTAAGTCAACCCATGAAACGATTGTGCGGGTGCTCCG-TCGGCCGAAGAGGCAGAAT-CTGCAAA
65 CTAAGCCAACCCATGAAACGAGCGTGC-GGTGCTCAGCT-GATCG-GGAGGCAGAATGC-GCAAG
*
14926018 CCGAGGATCGACTCGATCCCCCCTACGTGCTATCGATCCTGCTGCAGCAACCCTCAG
126 CCGAGGATCGAC-CGATCCCCCCTGCGTGCTATCGATCCTGCT-C-GCAACCCTCAG
*
14926075 TCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCC
1 TCCAGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCC
* * * *
14926140 TAAACCTACCCATAAAACGAGCGTGCAGGTGCTCAGCTGATCAGGGAGGTAGAATGCGCAAGCCG
66 TAAGCCAACCCATGAAACGAGCGTGC-GGTGCTCAGCTGATC-GGGAGGCAGAATGCGCAAGCCG
* * *
14926205 AAGATCGACCTGGTCCCTCCC-GCGTGC--T-G---CTG-T---AACCCTCGG
129 AGGATCGACC-GATCCC-CCCTGCGTGCTATCGATCCTGCTCGCAACCCTCAG
* * * *
14926247 TCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAAAT-TCGTATGC
1 TCCAGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCT-GTATGC
* * * * * *
14926311 CTAAGCCAACCCATGAAATGAGCGTGCGATCACTCAGCCGATCGGAGAGGCAGAATGCACAAGCT
65 CTAAGCCAACCCATGAAACGAGCGTGCGGT-GCTCAGCTGATCGG-GAGGCAGAATGCGCAAGCC
* *
14926376 GGGGA-CAGACCCGATCCCCACCTGCGTGCTATCGATCCTACTACCGCAACCCTC
128 GAGGATC-GA-CCGATCCCC-CCTGCGTGCTATCGATCCTGCT--CGCAACCCTC
14926430 GATCCGATCT
Statistics
Matches: 286, Mismatches: 44, Indels: 49
0.75 0.12 0.13
Matches are distributed among these distances:
171 7 0.02
172 126 0.44
173 8 0.03
175 1 0.00
176 1 0.00
177 1 0.00
178 3 0.01
179 2 0.01
180 1 0.00
181 1 0.00
182 1 0.00
183 1 0.00
184 119 0.42
185 14 0.05
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (179 bp):
TCCAGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCC
TAAGCCAACCCATGAAACGAGCGTGCGGTGCTCAGCTGATCGGGAGGCAGAATGCGCAAGCCGAG
GATCGACCGATCCCCCCTGCGTGCTATCGATCCTGCTCGCAACCCTCAG
Found at i:14926792 original size:26 final size:26
Alignment explanation
Indices: 14926756--14926808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14926746 CTGGTCTGAT
14926756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14926782 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14926808 C
1 C
14926809 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14927516 original size:26 final size:26
Alignment explanation
Indices: 14927478--14927530 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14927468 GGCTCAAGCT
14927478 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14927504 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14927530 C
1 C
14927531 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14927824 original size:158 final size:157
Alignment explanation
Indices: 14927503--14927838 Score: 349
Period size: 158 Copynumber: 2.1 Consensus size: 157
14927493 AACTCCATAT
* * **
14927503 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCACGGAATGAGCGTCCAGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCGTCCAGGCGCTCAG
* * * * *
14927568 CTGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACTTGGTCCCCCTCTGCGTCTATCAGTCC
65 CCGACCGGAGAAGCAGAATGCGAAAGCCGGGGATAGACTCGGTCCCCCTCTGCGTCTATCAGTCC
* * *
14927633 CGCTGCCACAACCCTCGGTCTGGCTGGG
130 CGCTACCACAACCCTCGATCTGGCTGGA
* * * *
14927661 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCGTCCAGGCGCTCAG
* * * *
14927726 CCGACTGGAGAAGCAGAATGCGAAAGTCGTGGATTAG-CTCGGTCCCCC-CTGCG-CATTGTC-G
65 CCGACCGGAGAAGCAGAATGCGAAAGCCGGGGA-TAGACTCGGTCCCCCTCTGCGTC--TATCAG
* * *
14927787 ATCCTGCTACTACAACCCTCGATTTGGTCT-GA
127 -TCCCGCTACCACAACCCTCGATCTGG-CTGGA
*
14927819 TCTTAGACTGGGAATGAACT
1 GCTTAGACT-GGAATGAACT
14927839 TCGTATTCTT
Statistics
Matches: 147, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
156 1 0.01
157 7 0.05
158 135 0.92
159 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCATATACCTAAGCCAACCCACGAAACAAGCGTCCAGGCGCTCAGC
CGACCGGAGAAGCAGAATGCGAAAGCCGGGGATAGACTCGGTCCCCCTCTGCGTCTATCAGTCCC
GCTACCACAACCCTCGATCTGGCTGGA
Found at i:14927855 original size:26 final size:26
Alignment explanation
Indices: 14927819--14927870 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14927809 TTTGGTCTGA
*
14927819 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
14927845 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
14927871 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:14928067 original size:26 final size:26
Alignment explanation
Indices: 14928029--14928081 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14928019 CCAGTCCAAT
14928029 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14928055 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14928081 C
1 C
14928082 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14928727 original size:159 final size:160
Alignment explanation
Indices: 14928222--14928787 Score: 422
Period size: 159 Copynumber: 3.6 Consensus size: 160
14928212 TCTTAGATTG
* * ** *
14928222 GGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGTGT-TCGGGCACTGAGCCGGCCGA
1 GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTATCGGGTGCTGAGCCGACCGA
* * * * * * * *
14928285 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGATACCC-CTCTGCGTGCTGTCAGTCTCACTAC
65 AGAGGCATAATGCGCAAGCCGGGGATTGGCCTGAT-CCCTCTCTACGTGCTGTCGGTCCCGCTGC
* **
14928349 CACAACCCTCGGTCTGACTGGGGCTTAAACAT
129 CACAACCCTCGGTCTGGCTATGGCTTAAACAT
* * * * * * *
14928381 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-TAG-GCATGCGGGTGCTCAACAGGCCCG
1 GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTAT-CGGGTGCTGAGC-CGACCG
* * ** * * * * * * *
14928444 AA-AGGCAGAATGGGCAAGCCAAGTATTGGCCTGGT-CATACCCTTCGTGCTGTCGATCCTGCTG
64 AAGAGGCATAATGCGCAAGCCGGGGATTGGCCTGATCCCT-CTCTACGTGCTGTCGGTCCCGCTG
*** * * * *
14928507 TTGCAACCCTCGGTCCGGTTCAAT--CTTAGA-TT
128 CCACAACCCTCGGTCTGG--CTATGGCTTAAACAT
* * ** *
14928539 GGGAATGAACTTTGTATGCAAAAGTCAACCCACGAAACGAGCGTAT-GGGTGCTGAGCCGACCGA
1 -GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTATCGGGTGCTGAGCCGACCGA
*
14928603 AGAGGCATAATGCGTAAGCCGGGGATTGGCCTGATCCCTCTCTACGTGCTG-CTGGTCCCGCTGC
65 AGAGGCATAATGCGCAAGCCGGGGATTGGCCTGATCCCTCTCTACGTGCTGTC-GGTCCCGCTGC
*
14928667 CACAACCCTCGATCTGGCTATGGCTTAAACAT
129 CACAACCCTCGGTCTGGCTATGGCTTAAACAT
* * * * * * **
14928699 GGAATGAACTCTCTATCCCTAAGCCAACCCATGAAATGGGCGTA-CGGGTGCTCAACCGGTC-AG
1 GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTATCGGGTGCTGAGCCGACCGA-
* *
14928762 AGAGGTAGAATGCGCAAGCCGGGGAT
65 AGAGGCATAATGCGCAAGCCGGGGAT
14928788 CAGCTCGGTC
Statistics
Matches: 303, Mismatches: 85, Indels: 38
0.71 0.20 0.09
Matches are distributed among these distances:
157 5 0.02
158 12 0.04
159 270 0.89
160 12 0.04
161 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (160 bp):
GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTATCGGGTGCTGAGCCGACCGAA
GAGGCATAATGCGCAAGCCGGGGATTGGCCTGATCCCTCTCTACGTGCTGTCGGTCCCGCTGCCA
CAACCCTCGGTCTGGCTATGGCTTAAACAT
Found at i:14928812 original size:318 final size:315
Alignment explanation
Indices: 14928054--14928818 Score: 829
Period size: 318 Copynumber: 2.4 Consensus size: 315
14928044 AACTCCGTAT
* * * ** *
14928054 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACCCAA
1 GCTTAAACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
* * * * * * * * *
14928119 CCGACCGGAGAAGTAGAATGTGCAAGTCACGGATTGACTCAGTCCCCCCTACGTGCTGTCGATCC
65 CCGGCCAGAGAGGTAGAATGCGCAAGCCAAGGATAG-CTCGGTCCTCCCTACGTGCTGTCGATCC
* * * **
14928184 TGGTACCGCAACCCTCGGTTCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
129 TGCTACCGCAACCCTCGGTCCGATCTAATCTTAGATTGGGAATGAACTCCGTATGCAAAAGTCAA
* *
14928249 CCCACGAAACGAGTGTTCGGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGA
194 CCCACGAAACGAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGA
* * * *
14928314 CCCGATACCCCTCTGCGTGCTGTCAGTCTCACTACCACAACCCTCGGTCTGACTGGG
259 CCCGATACCCCTCTACGTGCTGTCAGTCCCACTACCACAACCCTCGATCTGACTAGG
* * *
14928371 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCATGCGGGTGCTCAA
1 GCTTAAACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
* * * * * * * * *
14928436 CAGGCCCGAAAGGCAGAATGGGCAAGCCAAGTATTGGC-CTGGTCATACCCTTCGTGCTGTCGAT
65 CCGGCCAGAGAGGTAGAATGCGCAAGCCAAGGA-TAGCTC-GGTCCT-CCCTACGTGCTGTCGAT
*** * **
14928500 CCTGCTGTTGCAACCCTCGGTCCGGT-TCAATCTTAGATTGGGAATGAACTTTGTATGCAAAAGT
127 CCTGCTACCGCAACCCTCGGTCCGATCT-AATCTTAGATTGGGAATGAACTCCGTATGCAAAAGT
** *
14928564 CAACCCACGAAACGAGCGTAT-GGGTGCTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGGGGA
191 CAACCCACGAAACGAGCGT-TCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGA
* * * * * * * *
14928628 TTGGCCTGAT-CCCTCTCTACGTGCTG-CTGGTCCCGCTGCCACAACCCTCGATCTGGCTATG
255 TCGACCCGATACCC-CTCTACGTGCTGTC-AGTCCCACTACCACAACCCTCGATCTGACTAGG
* *
14928689 GCTTAAACATGGAATGAACTCTCTATCCCTAAGCCAACCCATGAAATGGGCGTACGGGTGCTCAA
1 GCTTAAACATGGAATGAACTC-CTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
* ** *
14928754 CCGGTCAGAGAGGTAGAATGCGCAAGCCGGGGATCAGCTCGGTCCTCCACTGCGTGCTGTCGATC
65 CCGGCCAGAGAGGTAGAATGCGCAAGCCAAGGAT-AGCTCGGTCCTCC-CTACGTGCTGTCGATC
14928819 TCACTACCGG
Statistics
Matches: 367, Mismatches: 69, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
316 1 0.00
317 89 0.24
318 275 0.75
319 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (315 bp):
GCTTAAACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAAC
CGGCCAGAGAGGTAGAATGCGCAAGCCAAGGATAGCTCGGTCCTCCCTACGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCCGATCTAATCTTAGATTGGGAATGAACTCCGTATGCAAAAGTCAACC
CACGAAACGAGCGTTCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACC
CGATACCCCTCTACGTGCTGTCAGTCCCACTACCACAACCCTCGATCTGACTAGG
Found at i:14928953 original size:171 final size:169
Alignment explanation
Indices: 14928656--14929057 Score: 468
Period size: 171 Copynumber: 2.4 Consensus size: 169
14928646 ACGTGCTGCT
* * * * * *
14928656 GGTCCCGCTGCCACAACCCTCGATCTGGCTATGGCTTAAACATGGAATGAACTCTCTATCCCTAA
1 GGTCCTGCTGCCACAACCCTCGGTCT-GCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAA
* * * * *
14928721 GCCAACCCATGAAATGGGCGTACGGGTGCTCAACCGGTCAGAGAGGTAGAATGCGCAAGCCGGGG
65 GCCAACCCATGAAATGAGCATACGGGTGCCCAACCGGTCAGAGAGGTAGAATGCACAAGCCGAGG
* * * * *
14928786 ATCAGCTCGGTCCTCCACTGCGTGCTGTCGAT-CTCACTACC
130 ATCAGCCCAGTCC-CCACTACATACTGTCGATCCT-ACTACC
* *
14928827 GGTCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAA
1 GGTCCTGCTGCCACAACCCTCGGTCTG-CTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAA
* *
14928892 GCCAACCCATGAAATGAGCATACGGGTGCCCAATCGG-CTGGAGAGGTAGAATGCACAAGCCGAG
65 GCCAACCCATGAAATGAGCATACGGGTGCCCAACCGGTC-AGAGAGGTAGAATGCACAAGCCGAG
* * *
14928956 GATCAGCCCAGTCCCCCCTACATACTGTCGATCCTACTGCT
129 GATCAGCCCAGTCCCCACTACATACTGTCGATCCTACTACC
* * ** *
14928997 GGTCCTGCTGCTACAACCCTCGGTCTGCTCTGATCTTAGAC-TGGGAATAAACTCTGTATGC
1 GGTCCTGCTGCCACAACCCTCGGTCTGCT-AGGGCTTAGACAT-GGAATGAACTCTGTATGC
14929058 TTAGACATGG
Statistics
Matches: 197, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
169 3 0.02
170 70 0.36
171 124 0.63
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (169 bp):
GGTCCTGCTGCCACAACCCTCGGTCTGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAG
CCAACCCATGAAATGAGCATACGGGTGCCCAACCGGTCAGAGAGGTAGAATGCACAAGCCGAGGA
TCAGCCCAGTCCCCACTACATACTGTCGATCCTACTACC
Found at i:14929061 original size:26 final size:26
Alignment explanation
Indices: 14929024--14929084 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
14929014 CCTCGGTCTG
14929024 CTCTG-AT-CTTAGAC-TGGGAATAAA
1 CTCTGTATGCTTAGACAT-GGAATAAA
*
14929048 CTCTGTATGCTTAGACATGGAATGAA
1 CTCTGTATGCTTAGACATGGAATAAA
14929074 CT-TCGTATGCT
1 CTCT-GTATGCT
14929085 AAGCCAACCC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
24 5 0.16
25 3 0.09
26 23 0.72
27 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (26 bp):
CTCTGTATGCTTAGACATGGAATAAA
Found at i:14929531 original size:26 final size:26
Alignment explanation
Indices: 14929502--14929554 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14929492 CCGATTTGAT
14929502 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
14929528 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
14929554 C
1 C
14929555 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:14930582 original size:26 final size:26
Alignment explanation
Indices: 14930541--14930593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14930531 CTTGTCCGAT
*
14930541 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
14930567 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14930593 C
1 C
14930594 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14931959 original size:158 final size:159
Alignment explanation
Indices: 14931476--14931981 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 159
14931466 ACTCCGTATG
* * *
14931476 CTTAGACAT-GGAATGAACTCTATATACCTAAGCCAACCCACGAAACA-AGCGTGCATGCGGGCA
1 CTTAGACATAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGC--G--TGCGGGCG
* * *
14931539 CTCAGCCGATCGGAGAGTCAGAATGTGTAAGCCGGGGA-CTGGCCCGATCCCCCCCTGCGTGCTG
62 CTCAGCCGATCGGAGAGGCAGAATGAGTAAGCCGGGGATC-GACCCGAT-CCCCCCTGCGTGCTG
* * * * * *
14931603 TTGATCCTGCTGCCATAACCCTT-AGTCCAGTCCGAT
125 TCGATCCTGCTGCCACAA-CCTTCGGT-CTGTCTGAC
* * * * * *
14931639 CTTAGA-TTGGGAATGAACTACATATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGAGCGCTGA
1 CTTAGACATAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
* * * * * * *
14931702 GCCGATC-GAGAGGTAGAATGAGTAAGCCGGGGATC-AGTCTGGTCACCCTCTGCATGCTATCGA
66 GCCGATCGGAGAGGCAGAATGAGTAAGCCGGGGATCGA-CCCGATC-CCCCCTGCGTGCTGTCGA
* * * **
14931765 TCCCGCTGCCACAACGC-TCGGCCTGACTGGGG
129 TCCTGCTGCCACAAC-CTTCGGTCTGTCT-GAC
* * * *
14931797 CTTAGACAT-GGAATGAACTCCCTATGCCTGAGCCAACCCATGAAGCAG-GCGTGCGGGCGCTCA
1 CTTAGACATAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
** * *
14931860 GTTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
66 GCCGATCGGAGAGGCAGAATGAGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* *
14931925 CTGCTGTCGCAACCTTCGGTCTGGTCTGAC
131 CTGCTGCCACAACCTTCGGTCT-GTCTGAC
* *
14931955 CTTAGAC-TAGAAATGAACTCCGTATGC
1 CTTAGACATAGGAATGAACTCCATATGC
14931982 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 57, Indels: 35
0.75 0.16 0.10
Matches are distributed among these distances:
157 8 0.03
158 167 0.62
159 51 0.19
160 1 0.00
161 1 0.00
162 1 0.00
163 42 0.15
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCA
GCCGATCGGAGAGGCAGAATGAGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
CTGCTGCCACAACCTTCGGTCTGTCTGAC
Found at i:14933206 original size:26 final size:26
Alignment explanation
Indices: 14933177--14933229 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14933167 CCCGTCCAAT
*
14933177 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14933203 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14933229 C
1 C
14933230 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14933840 original size:342 final size:344
Alignment explanation
Indices: 14932860--14934061 Score: 1092
Period size: 342 Copynumber: 3.4 Consensus size: 344
14932850 CTGGTCTGAT
* * * * * *
14932860 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTG--CGGGCGCTGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTCCAGGCGCTCA
* * * * * * * ** *
14932923 GCAGGCTAAAGAAGCATAATGGGCAAGTCGGGGATCGACCCGATCCCCCTCTGTGTGCTGCCTG-
66 GCCGACCAGAGAAGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTC-GA
* *
14932987 T-CT-CATTGCCACAAACCTC-GATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
130 TCCTGC--TGCCACAACCCTCAG-TTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * ** * * * *
14933049 AGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCAGAGAGGTAGAATGCGTAAACCGAG
192 AGCCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGTGCAAGCCGAG
* * * * **
14933114 ACCGACCCGGTCCCCCTCTGCGTGTTGTCGATCCTACTGTCGCAATCCTT-GGTCCCGTCCAATC
257 ATCGACCC-GTCCCCC-CTGCGTGCTGTCGATCCTGCTGTCGCAACCCTTAGGTCTGGTCCAATC
*
14933178 TTAGATTGGGAATGAACTCCGTATG
320 TTAGACTGGGAATGAACTCCGTATG
* *
14933203 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCCCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC--GT--GT--CCAGG
* * * * *
14933268 CGATCGGAGAGGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCTTCTAC
60 CGCTC----A-GCCGACCAGAGAAGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTAC
*
14933333 GTGCTGTCGATCCTGCTGTCGGTTATGCTACCATAACCCTCATTTCGGCTGGGGCTTAGACATGG
120 GTGCTGTCGATCCTGCTG-C-------C-A-C--AACCCTCAGTTCGGCTGGGGCTTAGACATGG
** ** * *
14933398 AATGAACTCCCTATG-CTGAAGCCAACCCACGAAATGGAG-GTACAAGCGTTCAGCTTG-CCAGA
173 AATGAACTCCCTATGCCT-AAGCCAACCCAC-AAAACGAGCGTACGGGCGCTCAG-TCGACCAGA
* * * *
14933460 GAGGTAGAATACT-TAAGCCGAGATC-AGCCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGTCG
235 GAGGCAGAAT-GTGCAAGCCGAGATCGA-CCCG-TCCCCCCTGCGTGCTGTCGATCCTGCTGTCG
* ** *
14933523 TAA-CCTTAGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
297 CAACCCTTAGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * **
14933570 CTTAGACCGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGT-T-CAGGCGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTCCAGGCGCTCA
* * * * * * * *
14933633 GCCGGCTAGAGAGGCATAATGCGCAAGCTGGGGATCAACTCGATCCCCCTCTTCATGCTATCGAT
66 GCCGACCAGAGAAGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGAT
* *
14933698 CCTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCT
131 CCTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
14933763 AACCCACAAAACGAGCGTACGGGTGCTCAGTCGACCGGAGATGCAAAATGTGCAAGTCAAGGATC
196 AACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGTGCAAGCCGA-GATC
*** * *
14933828 GACCCGTCCCCCCTATATGCTGTCGATCCTGCTG-CTGCAACCCTCA-GTCTGATCCAATCTTAG
260 GACCCGTCCCCCCTGCGTGCTGTCGATCCTGCTGTC-GCAACCCTTAGGTCTGGTCCAATCTTAG
*
14933891 ACTAGGAATGAACTCCGTATG
324 ACTGGGAATGAACTCCGTATG
* * *
14933912 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCGGGCGC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT--GTCCAGGCGC
* * * *
14933976 TCAGCCGACCAGAGAAGCAGAATGCCCAAGCCGGGGATCGACCCGGTCCACCC-CTACGTGCTGT
63 TCAGCCGACCAGAGAAGCATAATGCGCAAGCCGGGGATCAACCCGATCC-CCCTCTACGTGCTGT
14934040 CGATCCTGCTGCCACAACCCTC
127 CGATCCTGCTGCCACAACCCTC
14934062 CATCTGATCT
Statistics
Matches: 695, Mismatches: 114, Indels: 97
0.77 0.13 0.11
Matches are distributed among these distances:
341 10 0.01
342 186 0.27
343 59 0.08
344 2 0.00
345 4 0.01
346 77 0.11
347 4 0.01
351 5 0.01
353 1 0.00
354 62 0.09
355 3 0.00
356 51 0.07
357 3 0.00
358 1 0.00
359 7 0.01
362 1 0.00
364 1 0.00
365 3 0.00
366 5 0.01
367 107 0.15
368 97 0.14
369 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (344 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTCCAGGCGCTCA
GCCGACCAGAGAAGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGAT
CCTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGTGCAAGCCGAGATCG
ACCCGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTTAGGTCTGGTCCAATCTTAGAC
TGGGAATGAACTCCGTATG
Found at i:14933924 original size:26 final size:26
Alignment explanation
Indices: 14933886--14933938 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14933876 CTGATCCAAT
14933886 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14933912 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
14933938 C
1 C
14933939 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14934101 original size:189 final size:183
Alignment explanation
Indices: 14933728--14934101 Score: 473
Period size: 189 Copynumber: 2.0 Consensus size: 183
14933718 TTCGGCTGGG
* *
14933728 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * ** * *
14933793 TCGACCGGAGATGCAAAATGTGCAAGTCAAGGATCGACCCGTCCCCCCTATATGCTGTCGATCCT
66 CCGACCAGAGAAGCAAAATGCCCAAGCCAAGGATCGACCCGTCCCCCCTACATGCTGTCGATCCT
** * *
14933858 GCTGCTGCAACCCTCAGTCTGATCCAATCTTAGACTAGGAATGAACTCCGTAT
131 GCTGCCACAACCCTCAGTCTGATCCAACCTGAGACTAGGAATGAACTCCGTAT
* *
14933911 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCGGGCGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAA--A-CGAGCGTACGGGCGC
* ** *
14933976 TCAGCCGACCAGAGAAGCAGAATGCCCAAGCCGGGGATCGACCCGGTCCACCCCTACGTGCTGTC
62 TCAGCCGACCAGAGAAGCAAAATGCCCAAGCCAAGGATCGACCC-GTCC-CCCCTACATGCTGTC
**
14934041 GATCCTGCTGCCACAACCCTCCA-TCTGATCTGACCTGAGA-TAGGGAATGAACTCCGTAT
125 GATCCTGCTGCCACAACCCT-CAGTCTGATCCAACCTGAGACTA-GGAATGAACTCCGTAT
14934100 GC
1 GC
14934102 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
183 41 0.25
184 3 0.02
186 1 0.01
187 47 0.29
188 6 0.04
189 62 0.38
190 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.19
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
CCGACCAGAGAAGCAAAATGCCCAAGCCAAGGATCGACCCGTCCCCCCTACATGCTGTCGATCCT
GCTGCCACAACCCTCAGTCTGATCCAACCTGAGACTAGGAATGAACTCCGTAT
Found at i:14934161 original size:346 final size:342
Alignment explanation
Indices: 14933542--14934164 Score: 790
Period size: 346 Copynumber: 1.8 Consensus size: 342
14933532 GTCTGGTCTG
* * * * *
14933542 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACCGGGGATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
14933607 CCATAAAACGAGCGTTCAGGCGCTCAGCCGGCTAGAGAGGCATAATGCGCAAGCTGGGGATCAAC
66 CCACAAAACGAGCGTTCAGGCGCTCAGCCGACCAGAGAAGCAGAATGCCCAAGCCGGGGATCAAC
* * ** *
14933672 TCGATCCCCCTCTTCATGCTATCGATCCTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACA
131 CCGATCCCCCTCTACATGCTATCGATCCTGCTGCCACAACCCTCAGTTCGGCTGGACCTGAGACA
* *
14933737 TGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTACGGGTGCTCAGTCGACCGGA
196 GGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAACGTACGGGTGCTCAGTCGACCGGA
*
14933802 GATGCAAAATGTGCAAGTCAAGGATCGACCCGTCCCCCCTATATGCTGTCGATCCTGCTGCTGCA
261 GAGGCAAAATGTGCAAGTCAAGGATCGACCCGTCCCCCCTATATGCTGTCGATCCTGCTGCTGCA
14933867 ACCCTCAGTCTGATCCA
326 ACCCTCAGTCTGATCCA
* *
14933884 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
14933949 CCACGAAACGAGCGTGCGTGCGGGCGCTCAGCCGACCAGAGAAGCAGAATGCCCAAGCCGGGGAT
66 CCACAAAACGAGCGT---T-CAGGCGCTCAGCCGACCAGAGAAGCAGAATGCCCAAGCCGGGGAT
* * * * *
14934014 CGACCCGGTCCACCC-CTACGTGCTGTCGATCCTGCTGCCACAACCCTCCA--TCTGATCT-GAC
127 CAACCCGATCC-CCCTCTACATGCTATCGATCCTGCTGCCACAACCCT-CAGTTC-G-GCTGGAC
* * * * * *
14934075 CTGAGATAGGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAAGGAATGTGCGGGTGCTGAG
188 CTGAGACAGGGAATGAACTCCGTATGCCTAAGCT-AACCCACAAAACGAACGTACGGGTGCTCAG
*
14934139 -CAGACCGGAGAGGCATAATGTGCAAG
252 TC-GACCGGAGAGGCAAAATGTGCAAG
14934165 CTGGGGATTG
Statistics
Matches: 235, Mismatches: 36, Indels: 16
0.82 0.13 0.06
Matches are distributed among these distances:
342 71 0.30
345 5 0.02
346 152 0.65
347 7 0.03
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (342 bp):
ATCTTAGACTAGGAATGAACTCCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACGAGCGTTCAGGCGCTCAGCCGACCAGAGAAGCAGAATGCCCAAGCCGGGGATCAAC
CCGATCCCCCTCTACATGCTATCGATCCTGCTGCCACAACCCTCAGTTCGGCTGGACCTGAGACA
GGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAACGTACGGGTGCTCAGTCGACCGGA
GAGGCAAAATGTGCAAGTCAAGGATCGACCCGTCCCCCCTATATGCTGTCGATCCTGCTGCTGCA
ACCCTCAGTCTGATCCA
Found at i:14934307 original size:159 final size:159
Alignment explanation
Indices: 14933911--14934362 Score: 421
Period size: 159 Copynumber: 2.8 Consensus size: 159
14933901 AACTCCGTAT
* *
14933911 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCGGGCGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGC--G-GGGC-C
* *
14933976 TCAGCCGACCAGAGAAGCAGAATGCCCAAGCCGGGGATCGACCCGGTCCACCCCTACGTGCTGTC
62 TCAGCCGACCGGAGAGGCAGAATGCCCAAGCCGGGGATCGACCCGGTCCACCCCTACGTGCTGTC
* *
14934041 GATCCTGCTGCCACAACCCTCCATCTGATCTGA
127 GATCCCGCTGCCACAACCCTCCATCCGATCTGA
* * * * * ** * *
14934074 CCTGAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAA-TGTGCGGGTG-CTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAACAAGCGTGCGGG-GCCTC
* * ** * * * ** *
14934137 AGCAGACCGGAGAGGCATAATGTGCAAGCTGGGGATTGGCCCGGTCC-CCCTCTGTGTGTTGTCG
64 AGCCGACCGGAGAGGCAGAATGCCCAAGCCGGGGATCGACCCGGTCCACCC-CTACGTGCTGTCG
* ** *
14934201 GTCCCGCTGCCACAACCCTCGGTCCGA-CTGGG
128 ATCCCGCTGCCACAACCCTCCATCCGATCT-GA
* *
14934233 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGGCCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGGCCTCAG
* ** * * * ** *
14934298 CCGATCGGAGAGAAAGAATGCGCAAGTCGGGGATC-AGCTCGGTCC-CCCCCGCATGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCCCAAGCCGGGGATCGA-CCCGGTCCACCCCTACGTGCTGTCGAT
14934361 CC
130 CC
14934363 TACTGTCGCA
Statistics
Matches: 226, Mismatches: 56, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
158 23 0.10
159 155 0.69
160 2 0.01
161 2 0.01
163 41 0.18
164 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGGCCTCAG
CCGACCGGAGAGGCAGAATGCCCAAGCCGGGGATCGACCCGGTCCACCCCTACGTGCTGTCGATC
CCGCTGCCACAACCCTCCATCCGATCTGA
Found at i:14934436 original size:26 final size:26
Alignment explanation
Indices: 14934392--14934444 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14934382 CTGGTCCGAT
14934392 CTTAGACTAGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
* * * *
14934418 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
14934444 C
1 C
14934445 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:14935154 original size:26 final size:26
Alignment explanation
Indices: 14935115--14935165 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14935105 GGCTCAAAAT
14935115 CTTAGACTGAGAATGAACTCCGTATA
1 CTTAGACTGAGAATGAACTCCGTATA
14935141 CTTAGACATG-GAATGAACTCCGTAT
1 CTTAGAC-TGAGAATGAACTCCGTAT
14935166 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATA
Found at i:14935705 original size:159 final size:158
Alignment explanation
Indices: 14935141--14935716 Score: 507
Period size: 159 Copynumber: 3.6 Consensus size: 158
14935131 ACTCCGTATA
* * *
14935141 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACAAGCGTGTGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
* * * * * * * *
14935206 CGG-CTAGAAAGGTAGAATGCACAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCAGTC
66 CGGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATCGG-CCGATCCCCCTCTGCGTGCTGTCAGTC
* * * *
14935270 CCGCTACCGTAACCTTCGGTCCGAATGGGG
129 CCGCTGCCGTAACCCTCAGTCTGAATGGGG
* * * * **
14935300 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
* * * * *
14935365 CGGTCGGAGAGACGGAATGCGCAAGCCAAGGACCAGCCTGAT-CCCCTCTGCGTGCTGTC-GATC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC-GATCCCCCTCTGCGTGCTGTCAG-TC
**** ** ****
14935428 TTATTGCCGTAACCCTCAGTCTGGTTCAAT
129 CCGCTGCCGTAACCCTCAGTCTGAATGGGG
* * ** ** * * * *
14935458 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCAAAAAATGAGCATGCGGGCTCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
* * * * * *
14935522 CCGATCGGAGAGGCATAATACGCAAGTCGGGGATCGGCTCGATCCCCCTCTGTGTGCTGTCAGTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC-CGATCCCCCTCTGCGTGCTGTCAGTC
** *
14935587 CCGCTGCCACAACCCTCAGTCTGACTGGGG
129 CCGCTGCCGTAACCCTCAGTCTGAATGGGG
* * *
14935617 CTTAGACATCGAATGAACTCCCTATGCCAAAGCCAACCCATGAAA-AGGGCGTGCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACA-AGCGTGCGGGCGCTCAA
*
14935681 CCGGTAC-GAGAGGTAGAATGCGCAAGCCAGGGATCG
65 CCGGT-CGGAGAGGCAGAATGCGCAAGCCAGGGATCG
14935717 ATCTGGTCCC
Statistics
Matches: 319, Mismatches: 88, Indels: 20
0.75 0.21 0.05
Matches are distributed among these distances:
157 2 0.01
158 117 0.37
159 196 0.61
160 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCGATCCCCCTCTGCGTGCTGTCAGTCCC
GCTGCCGTAACCCTCAGTCTGAATGGGG
Found at i:14935761 original size:317 final size:317
Alignment explanation
Indices: 14935227--14935801 Score: 724
Period size: 317 Copynumber: 1.8 Consensus size: 317
14935217 GTAGAATGCA
* * ** * *
14935227 CAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCAGTCCCGCTACCGTAACCTTCGGTCC
1 CAAGTCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCAGTCC
* * *
14935292 GAATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTACAGG
66 GAATGGGGCTTAGACATCGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACAAGCGTACAGG
** * * * * *
14935357 CGCTCAGTCGGTCGGAGAGACGGAATGCGCAAGCCAAGGACCAGCCTGATCCCCTCTGCGTGCTG
131 CGCTCAACCGGTCGGAGAGACAGAATGCGCAAGCCAAGGACCAGCCTGATCCCCCCTGCATACTA
* * * *
14935422 TCGATCTTATTGCCGTAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCATATGCCT
196 TCGATCCTATTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCT
14935487 AAGTCAACCCAAAAAATGAGCATGCGGGCTCTGAGCCGATCGGAGAGGCATAATACG
261 AAGTCAACCCAAAAAATGAGCATGCGGGCTCTGAGCCGATCGGAGAGGCATAATACG
* * * * * *
14935544 CAAGTCGGGGATCGGCTCGATCCCCCTCTGTGTGCTGTCAGTCCCGCTGCCACAACCCTCAGTCT
1 CAAGTCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCAGTCC
* * * * *
14935609 GACTGGGGCTTAGACATCGAATGAACTCCCTATGCCAAAGCCAACCCATGAAA-AGGGCGTGCGG
66 GAATGGGGCTTAGACATCGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACA-AGCGTACAG
** * * * * *
14935673 GCGCTCAACCGGTAC-GAGAGGTAGAATGCGCAAGCCAGGGATC-GATCTGGTCCCCCCTGTATA
130 GCGCTCAACCGGT-CGGAGAGACAGAATGCGCAAGCCAAGGACCAG-CCTGATCCCCCCTGCATA
* ** *
14935736 CTATCGGTCCTATTGGGGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTGCATATG
193 CTATCGATCCTATTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATG
14935801 C
258 C
14935802 TTAGACTGGG
Statistics
Matches: 213, Mismatches: 42, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
316 2 0.01
317 210 0.99
318 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (317 bp):
CAAGTCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAACCCTCAGTCC
GAATGGGGCTTAGACATCGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACAAGCGTACAGG
CGCTCAACCGGTCGGAGAGACAGAATGCGCAAGCCAAGGACCAGCCTGATCCCCCCTGCATACTA
TCGATCCTATTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCT
AAGTCAACCCAAAAAATGAGCATGCGGGCTCTGAGCCGATCGGAGAGGCATAATACG
Found at i:14935826 original size:26 final size:26
Alignment explanation
Indices: 14935775--14935827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14935765 CCGGTCCAAT
*
14935775 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14935801 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14935827 C
1 C
14935828 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14937373 original size:159 final size:160
Alignment explanation
Indices: 14937064--14938202 Score: 858
Period size: 159 Copynumber: 7.2 Consensus size: 160
14937054 GAACTCCTTA
* * *
14937064 AGCTTAGACTT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCACTC
1 AGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
14937128 AACCGA-CTGGAGAGGTAGAATGTGCAAGCTGGGGACCGACCCGGTCCCCCCCTGCGTGGTGTCG
65 AGCCGATC-GGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
** * * **
14937192 ATCCTACGGCCGCAACTGTCGGTCCGGTCT-G
129 ATCCCGCTGCCACAACCCTCGGTCCGGTCTGG
** * * * *
14937223 ATTTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGA
1 AGCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
14937288 GCCGATCGGAGAGGCATAATTTGCAAGCCGAGGG-TCGACCCGATCCCCCTCTGCATGCTATCGG
66 GCCGATCGGAGAGGCAGAATGTGCAAGCCG-GGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGA
* *
14937352 TCCCGCTGCCACAATCCTCGGTCTGG-CTGG
130 TCCCGCTGCCACAACCCTCGGTCCGGTCTGG
* * * * ** * * * * *
14937382 GGCTTAGA-CGTGGAATAAACTCCCTACACCTAAGCCAACCCACAAAACGGGTGTACGGGCACTC
1 AGCTTAGATTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * *
14937446 AGCC-AGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCACCT-TGCGTGCTGTCA
65 AGCCGA-TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
* * * * * *
14937509 ATCCTGTTGTCACAACCCTCGATCTGATCT-G
129 ATCCCGCTGCCACAACCCTCGGTCCGGTCTGG
* * * * * * *
14937540 ATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGTTGA
1 AGCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** *
14937605 GTCGATTGGAGAGGCATAATGTGCAAGCCGGGGATCGGCTTGGTCCCCCTCTGCGTGCTGTCGGT
66 GCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
14937670 CCCGTTGCCACAACCCTTGGTCC-GACTGG
131 CCCGCTGCCACAACCCTCGGTCCGGTCTGG
* * * * * * * * *
14937699 GGTTTAGACAT-GGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTC
1 AGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * *
14937763 AGTCGGCCAGAGAGGCAGAATGTGCAAGCCGAGGACCGACCCGGTCCCCGCT-TGCGTGCTGTCG
65 AGCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCC-CTCTGCGTGCTGTCG
* ** * **
14937827 ATCCTGCTGCCACAACCCTCGACCCGATC-CA
129 ATCCCGCTGCCACAACCCTCGGTCCGGTCTGG
* * * * * * * * * *
14937858 ATCTTAGACTGGGAATGAACTTCGTATACCTAAGTCAACCCACGAAACGAGCGTCCGAGTGTTGA
1 AGCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
14937923 GCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCTTCTACGTGCTGCCGGT
66 GCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
* *
14937988 CCCGCTGCCACAACCCTTGGTCTGG-CTGG
131 CCCGCTGCCACAACCCTCGGTCCGGTCTGG
* * * * * *
14938017 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTC
1 AGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * * *
14938081 AGTC-AGTCGGAGAGGTAGAATGCGTAAACCGGGGATTGGCCCGAT-CCCC-CTACGTGCTATCG
65 AGCCGA-TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
* * * * * *
14938143 ATCCTGCTGTCGCAACCCTCTGTTCGATCT-G
129 ATCCCGCTGCCACAACCCTCGGTCCGGTCTGG
* *
14938174 ATCTTAGACTGGGAATGAACTCCGTATGC
1 AGCTTAGATTGGGAATGAACTCCGTATGC
14938203 TTAGACTGGG
Statistics
Matches: 752, Mismatches: 206, Indels: 46
0.75 0.21 0.05
Matches are distributed among these distances:
156 1 0.00
157 53 0.07
158 134 0.18
159 555 0.74
160 9 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (160 bp):
AGCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
CCCGCTGCCACAACCCTCGGTCCGGTCTGG
Found at i:14937941 original size:318 final size:317
Alignment explanation
Indices: 14937065--14938202 Score: 1357
Period size: 318 Copynumber: 3.6 Consensus size: 317
14937055 AACTCCTTAA
* * * * * *
14937065 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * * *
14937130 CC-GACTGGAGAGGTAGAATGTGCAAGCTGGGGACCGACCCGGTCCCCCCCTGCGTGGTGTCGAT
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGT-CCCCCTTGCGTGCTGTCGAT
* * * ** * * * *
14937194 CCTACGGCCGCAACTGTCGGTCCGGTCTGATTTTAGATTGGGAATGAACTCCGTATGCCTAAGTC
129 CCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
14937259 AACCCACGAAACGAGCGTTCGGGCGTTGAGCCGATCGGAGAGGCATAATTTGCAAGCCGAGGG-T
194 AACCCACGAAACGAGCGTCCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCG-GGGAT
* * * *
14937323 CGACCCGATCCCCCTCTGCATGCTATCGGTCCCGCTGCCACAATCCTCGGTCTGGCTGGG
258 CGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
* * ** * * *
14937383 GCTTAGACGTGGAATAAACTCCCTACACCTAAGCCAACCCACAAAACGGGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * * *
14937448 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCACCTTGCGTGCTGTCAATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
* * * * *
14937513 TGTTGTCACAACCCTCGATCTGATCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
131 TGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
14937578 CCCACAAAACGAGCGTGCGGGTGTTGAGTCGATTGGAGAGGCATAATGTGCAAGCCGGGGATCGG
196 CCCACGAAACGAGCGTCCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGA
** * * * *
14937643 CTTGGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACCCTTGGTCCGACTGGG
261 CCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
* * * * * **
14937700 GTTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * *
14937765 TCGGCCAGAGAGGCAGAATGTGCAAGCCGAGGACCGACCCGGTCCCCGCTTGCGTGCTGTCGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCC-CTTGCGTGCTGTCGATC
* ** * *
14937830 CTGCTGCCACAACCCTCGACCCGATCCAATCTTAGACTGGGAATGAACTTCGTATACCTAAGTCA
130 CTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
14937895 ACCCACGAAACGAGCGTCCGAGTGTTGAGCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCG
195 ACCCACGAAACGAGCGTCCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCG
* * *
14937960 ACCCGATCCCCTTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
260 ACCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
*
14938018 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * * ** * * * *
14938083 TCAGTCGGAGAGGTAGAATGCGTAAACCGGGGATTGGCCCGATCCCCC-TACGTGCTATCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
* * *
14938147 TGCTGTCGCAACCCTCTG-TTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGCCACAACCCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
14938203 TTAGACTGGG
Statistics
Matches: 684, Mismatches: 132, Indels: 10
0.83 0.16 0.01
Matches are distributed among these distances:
316 63 0.09
317 262 0.38
318 358 0.52
319 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTCCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGA
CCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
Found at i:14938227 original size:26 final size:26
Alignment explanation
Indices: 14938176--14938228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14938166 TCGATCTGAT
*
14938176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14938202 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
14938228 C
1 C
14938229 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14940309 original size:26 final size:26
Alignment explanation
Indices: 14940268--14940320 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14940258 CCGGTCAGAT
* *
14940268 CTTAGACTTGGAATGAAATTCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
* *
14940294 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
14940320 C
1 C
14940321 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:14942404 original size:26 final size:26
Alignment explanation
Indices: 14942366--14942418 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14942356 GGCTCAAAAT
14942366 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14942392 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
14942418 C
1 C
14942419 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14942903 original size:26 final size:26
Alignment explanation
Indices: 14942867--14942919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14942857 CCGGTCTGAT
*
14942867 CTTAGATTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
* *
14942893 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
14942919 C
1 C
14942920 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:14943199 original size:196 final size:196
Alignment explanation
Indices: 14942847--14943219 Score: 507
Period size: 196 Copynumber: 1.9 Consensus size: 196
14942837 CTGTTGCCAC
* * * *
14942847 AACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTATGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGATCCGGTCCGATCTTAGATTGGAAATGAACTACGTATGCTTAGACTGGGAATGAACT
* * * * * * * *
14942912 CTGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTCAGCCAGCCAGAGAGGTAGAATG
66 CCGTATGCCTAAGCCAACCCATGAAACGAGCATACGAGAGCTCAACCAGCCAGAGAGGCAGAATG
* * * *
14942977 CGTAAGTCGGGGATTGGCTCGATCCCCCCTATGTGCTATCGATCCTACTGCTGGTCCTACTGTCG
131 CGTAAGCCGAGGATAGGCTCGATCCCCCCTATGTACTATCGATCCTACTGCTGGTCCTACTGTCG
14943042 T
196 T
* * *
14943043 AACCCTCGGTCCGGTCCGATCTTAGATTGGAAATGAACTCCGTATGGTTAGACAT-GGAATGAAC
1 AACCCTCGATCCGGTCCGATCTTAGATTGGAAATGAACTACGTATGCTTAGAC-TGGGAATGAAC
* * *
14943107 TCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGAGCTCAACCGGCCAGAGGGGCAGAAT
65 TCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGAGAGCTCAACCAGCCAGAGAGGCAGAAT
*
14943172 GCGTAAGCCGAGGATAGGC-CTGATCCCCCCTATGTACTGTCGATCCTA
130 GCGTAAGCCGAGGATAGGCTC-GATCCCCCCTATGTACTATCGATCCTA
14943220 TTGCCGCAAC
Statistics
Matches: 152, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 150 0.99
197 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (196 bp):
AACCCTCGATCCGGTCCGATCTTAGATTGGAAATGAACTACGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCCATGAAACGAGCATACGAGAGCTCAACCAGCCAGAGAGGCAGAATG
CGTAAGCCGAGGATAGGCTCGATCCCCCCTATGTACTATCGATCCTACTGCTGGTCCTACTGTCG
T
Found at i:14943605 original size:26 final size:27
Alignment explanation
Indices: 14943569--14943621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
14943559 CTGATCTTAC
14943569 ACTGGGAATGAACCCCGTATG-CTAAG
1 ACTGGGAATGAACCCCGTATGCCTAAG
* *
14943595 ACTGGGGATGAACTCCGTATGCCTAAG
1 ACTGGGAATGAACCCCGTATGCCTAAG
14943622 TCAACCCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (27 bp):
ACTGGGAATGAACCCCGTATGCCTAAG
Found at i:14944317 original size:26 final size:26
Alignment explanation
Indices: 14944279--14944331 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14944269 GGCTTAAACT
*
14944279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
14944305 CTTAGAC-GTGGAAAGAACTCCGTATG
1 CTTAGACTG-GGAAAGAACTCCGTATG
14944331 C
1 C
14944332 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:14944808 original size:26 final size:26
Alignment explanation
Indices: 14944779--14944857 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
14944769 CCGGTCCAAT
*
14944779 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14944805 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14944831 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14944857 C
1 C
14944858 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14945320 original size:159 final size:157
Alignment explanation
Indices: 14945040--14945540 Score: 427
Period size: 159 Copynumber: 3.2 Consensus size: 157
14945030 ACTCCGTATG
* * * *
14945040 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAG
*** * * * * * *
14945104 CCGGTCGGAGAGGCAGAATGCGTAAGCCAGGTAT-CGGCCTAGTCCCCCCCTGTGTGCTGTCGAT
65 CCAACCGAAGAGGCAGAACGCGCAAGCCAGGGATCCGACC-AGT-CCCCCCTGCGTGCTGTCGAT
*
14945168 CTTGCTGCTGCAACGCTCGGTCCGATCTGAT
128 CCTGCTGC-GCAACGCTCGGTCCGATCTGAT
* * * * * * *
14945199 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAATCCATGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAGC
* * * * ** *
14945264 CAACCGAAGAGGCATAATGTGCAAGCCAGGG-TCCGACCTGATCCCTCTTTGCGTGCTGTCGGTC
66 CAACCGAAGAGGCAGAACGCGCAAGCCAGGGATCCGACCAG-TCCC-CCCTGCGTGCTGTCGATC
* * * * * **
14945328 CCGCTACGACAACCCTTGGTCTGA-CTGGGG
129 CTGCTGCG-CAACGCTCGGTCCGATCT-GAT
* * *
14945358 CTTAGACAT-GGAATTAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAG
**** ** * * *
14945422 CTGGTCGAAGAGGCAGAACGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATCC
65 CCAACCGAAGAGGCAGAACGCGCAAGCCAGGGATCCGACCAGTCCCCCCTGCGTGCTGTCGATCC
* *
14945487 TGTTGCCACAACGCTCGGTCCGATCTGAT
130 TGCTG-CGCAACGCTCGGTCCGATCTGAT
*
14945516 CTTAGATTGGGAATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
14945541 GCTTAGACTG
Statistics
Matches: 263, Mismatches: 68, Indels: 23
0.74 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 60 0.23
159 195 0.74
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAGC
CAACCGAAGAGGCAGAACGCGCAAGCCAGGGATCCGACCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCGCAACGCTCGGTCCGATCTGAT
Found at i:14945552 original size:26 final size:26
Alignment explanation
Indices: 14945516--14945568 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14945506 CCGATCTGAT
*
14945516 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14945542 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14945568 C
1 C
14945569 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14946910 original size:159 final size:159
Alignment explanation
Indices: 14946260--14947019 Score: 498
Period size: 157 Copynumber: 4.8 Consensus size: 159
14946250 GAACTCCTAT
* *
14946260 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
14946325 CCGA-TCGGAGAGGCAGAATGTGCAAG-CAGGGGATCAG-CCTGGTCCCTC-CTGCGTGCT-CTC
66 CCGAGCCAGAGAGGCAGAATGCGCAAGCCA-GGGATC-GCCCCGGTCCCCCTCTGCGTGCTGC-C
* * * * *
14946385 AATCTTGCTGTCGCAACCCTCAGTCCGGTCT--G
128 GATCTCGCTGCCACAACCCTC-GTCC-GACTGGG
** * * * * *
14946417 ATTTTGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * * * * *
14946481 ACC-AGCCAAAAAGGCATAATACGCAGGCCGGGGATTGGCCCTGT-CCCC-CTACGTGCTGCTGG
65 GCCGAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGCCCCGGTCCCCCTCTGCGTGCTGCCGA
* * *
14946543 TCCCACTGCCACAACCCTCGGCTCGACTGGG
130 TCTCGCTGCCACAACCCTCGTC-CGACTGGG
* *
14946574 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * *
14946639 -CTAGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCACCCCGGTCCCCCCCGGTGTGCTGTCGAT
66 CCGAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGCCCCGGTCCCCCTCTGCGTGCTGCCGAT
* * *
14946703 C-CTGCTACCACAACCCTCGATCCGA-TCCGA
131 CTC-GCTGCCACAACCCTCG-TCCGACT-GGG
* * * * * * * * *
14946733 TCATAGA-TTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** * *** *
14946797 GCCGA-TCGGAGAGGAAAAATGTGCAAGTTAGGGATCGGCTAAGTCCCCCTCTGCATGCTGCCGA
65 GCCGAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGCCCCGGTCCCCCTCTGCGTGCTGCCGA
14946861 TCTCGCTGCCACAACCCTCAGTCCGACTGGG
130 TCTCGCTGCCACAACCCTC-GTCCGACTGGG
* * * * * *
14946892 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAACCCACAAAACGGGCGTACAGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * * *
14946956 TCG-GTC-GAAGAGAAAGAATGTGCAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTACCGA
66 CCGAGCCAG-AGAGGCAGAATGCGCAAGCCAGGGATCGCCCCGGTCCCCCTCTGCGTGCTGCCGA
14947018 TC
130 TC
14947020 CTACTGTCGC
Statistics
Matches: 460, Mismatches: 120, Indels: 46
0.73 0.19 0.07
Matches are distributed among these distances:
155 5 0.01
156 30 0.07
157 180 0.39
158 67 0.15
159 171 0.37
160 7 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGCCCCGGTCCCCCTCTGCGTGCTGCCGAT
CTCGCTGCCACAACCCTCGTCCGACTGGG
Found at i:14947959 original size:26 final size:26
Alignment explanation
Indices: 14947918--14947970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14947908 CCGGTCCGAT
*
14947918 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
*
14947944 CTTAGACTAAGGATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
14947970 C
1 C
14947971 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCATATG
Found at i:14948690 original size:26 final size:26
Alignment explanation
Indices: 14948652--14948704 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14948642 GGCTCAAAAT
14948652 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14948678 CTTAGACAT-GGAATTAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14948704 C
1 C
14948705 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14949032 original size:159 final size:158
Alignment explanation
Indices: 14948677--14949039 Score: 408
Period size: 158 Copynumber: 2.3 Consensus size: 158
14948667 AACTCCGTAT
* * * * *
14948677 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCATGAAACTAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
14948742 TCGGTAGAGGAGGCAGAATGCGCAAGTCGAGGATCGACCTGGTCCCCTCTGCGTGCTGTCGATCC
66 CCGGCAGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGGTCCCCTCTGCGTGCTGTCGATCC
** ***
14948807 TGCTACTGTAACCCTCAGTCTGATCGGA
131 CACTACCACAACCCTCAGTCTGATCGGA
* * * *
14948835 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * *
14948899 GCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTG-CGGG
65 GCCGGCAGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGGT-CCCCTCTGCGTGCTGTC-GA
* * * * *
14948963 TCCCACTGCCACAACCCTTAGTTTG-GCTGGG
128 TCCCACTACCACAACCCTCAGTCTGATC-GGA
*
14948994 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
14949040 TAGGCATGCG
Statistics
Matches: 168, Mismatches: 32, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 91 0.54
159 75 0.45
160 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGGCAGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGGTCCCCTCTGCGTGCTGTCGATCC
CACTACCACAACCCTCAGTCTGATCGGA
Found at i:14949079 original size:159 final size:158
Alignment explanation
Indices: 14948677--14949121 Score: 436
Period size: 159 Copynumber: 2.8 Consensus size: 158
14948667 AACTCCGTAT
* * * *
14948677 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCATGAAACTA-GCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-TAGGCGTGCGGGCGCTGA
* * * *
14948741 GTCGGTAGAGGAGGCAGAATGCGCAAGTCGAGGATCGACCTGGT-CCCCTCTGCGTGCTGTCGAT
65 GTCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTG-CGAT
** ***
14948805 CCTGCTACTGTAACCCTCAGTCTGATCGGA
129 CCCACTACCACAACCCTCAGTCTGATCGGA
* * * * *
14948835 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAA-CGAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAG-GCGTGCGGGCGCTG
* * * * *
14948898 AGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCGGG
64 AGTCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGC-GA
* * * * *
14948963 TCCCACTGCCACAACCCTTAGTTTG-GCTGGG
128 TCCCACTACCACAACCCTCAGTCTGATC-GGA
* * *
14948994 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCATGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCGCTGAG
* * * * * * *
14949059 TCGATCGAAAAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCT-T-CGTGCTGCCGATC
66 TCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTG-CGATC
14949122 GTGCTGTCGC
Statistics
Matches: 230, Mismatches: 48, Indels: 19
0.77 0.16 0.06
Matches are distributed among these distances:
157 11 0.05
158 91 0.40
159 126 0.55
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGCGCTGAG
TCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCGATCC
CACTACCACAACCCTCAGTCTGATCGGA
Found at i:14949999 original size:342 final size:343
Alignment explanation
Indices: 14948836--14950499 Score: 1857
Period size: 342 Copynumber: 4.8 Consensus size: 343
14948826 CTGATCGGAT
* * * * * *
14948836 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * * *
14948901 CGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCGGGTCC
66 CGGCCGGAGAGGCATAATGTGCAAG-CGAGGATCAGCCC-GTCCCCCGCTGCGTGCTGCTGGTCC
* * ** **
14948966 CACTGCCACAACCCTTAGTTTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * * *
14949031 CCCATGAAATAGGCATGCGGGCGTTGAGTCGATCGAAAAGGTAGAATGCGTAAGCCGGGGATCGG
194 CCCACGAAATGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG
* * * * * *
14949096 CCCGAT-CCCCCTTCGTGCTGCCGATCGTGCTGTCGCAACCTTCGGT-C-CGATCCGATCTTAGA
259 CCCGGTCCCCCCTACGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTCCACGATCCGATCTTAGA
*
14949158 CTGGGAATGAACTCCATTTG
324 CTGGGAATGAACTCCATATG
* * *
14949178 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGTGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
** * * *
14949243 CGGCCGGAGAGGCATAATGCACAAGCCAGGGATTAGCCCGATCCCCCGCTGCGTGCTG-TCGATC
66 CGGCCGGAGAGGCATAATGTGCAAGCGA-GGATCAGCCCG-TCCCCCGCTGCGTGCTGCT-GGTC
* *
14949307 CCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * ** * * * ** *
14949372 ACCCATGAAACGGGCGTGTAGGCGTTGAGCCAATCGAAGAGGCAGAATGCGTAAGCCGGGGATCG
193 ACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
* *
14949437 GCTCGGTCCCCCCTTCGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTCCGATCCGATCCGATCT
258 GCCCGGTCCCCCCTACGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTCC-A--CGATCCGATCT
* *
14949502 TAGATTGGGAATGAACTCCATTTG
320 TAGACTGGGAATGAACTCCATATG
* *
14949526 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * * * *
14949591 CAGCCAGAGAGGCATAATGTGCAAGCCAGGGATTAGCCCAATCCCCCACTGCGTGCTGCCGGTCC
66 CGGCCGGAGAGGCATAATGTGCAAGCGA-GGATCAGCCC-GTCCCCCGCTGCGTGCTGCTGGTCC
*
14949656 CGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * ** * * * * *
14949721 CCCACGAAATGGGTGTACAGGCGCTCAACCGGCCGGAGAGGCAGAATACGTAAGTCAGGGATCAG
194 CCCACGAAATGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG
** * **
14949786 CTTGGTCCCCCC-ACGTGCT-ATCGATCCTGCTG-CTGCAACCCTC-GATCCA-G-TTTGATCTT
259 CCCGGTCCCCCCTACGTGCTGCT-GATCCTGCTGTC-GCAACCCTCAG-TCCACGATCCGATCTT
**
14949845 AGACTGGGAATGAACTCCGGATG
321 AGACTGGGAATGAACTCCATATG
* * * * * * *
14949868 CTTAGACTGGGGAAGAACTTCGTATGCCTCAGTCAACCCACAAAACAAGCGTGTGGGTGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * *
14949933 AGGTCGGAGAGGCACAATGTGCAAGTCGAGGATCAGCTCCGTCCCCCGTTGCGTGCTGCTGGTCC
66 CGGCCGGAGAGGCATAATGTGCAAG-CGAGGATCAGC-CCGTCCCCCGCTGCGTGCTGCTGGTCC
*
14949998 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAA
129 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
14950063 CCCACAAAACGGGCATGCGGGCGCTCAGTCGGTCGGAGGGGCAGAATGCGCAAGCCGAGGATCGG
194 CCCACGAAATGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG
* * * * * * **
14950128 CCCTGTCCCCCCTACATGCTGCTGATCCTGCTATTGTAACCCTCAGT-CA-GGTGTGATCTTAGA
259 CCCGGTCCCCCCTACGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTCCACGATCCGATCTTAGA
*
14950191 CTGGGAATGAACTTCATATG
324 CTGGGAATGAACTCCATATG
*
14950211 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * ** *
14950276 CGGCCGAAGAGGCATAAT-TCGTAAGCCGAGGATCAGCTCGGTCCCCCGCTATGTGCTG-TCAGT
66 CGGCCGGAGAGGCATAATGT-GCAAG-CGAGGATCAGC-CCGTCCCCCGCTGCGTGCTGCT-GGT
* *
14950339 CCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGTC-TCGGAATGAACTCCCTATGCCTAAGC
127 CCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
* * * * *
14950403 CAACCCACGAAATGAGCGTACGGGCGCTCAGTCGG-CTGGAGAGGTAGAATGCGCAAGCTGGGGA
191 CAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGTC-GGAGAGGCAGAATGCGTAAGCCGGGGA
* * * *
14950467 TCGACTCAGTCCCCCCTACGTGCTGTTGATCCT
255 TCGGCCCGGTCCCCCCTACGTGCTGCTGATCCT
14950500 ACTGCCTATC
Statistics
Matches: 1136, Mismatches: 161, Indels: 49
0.84 0.12 0.04
Matches are distributed among these distances:
341 2 0.00
342 482 0.42
343 340 0.30
344 3 0.00
346 4 0.00
347 28 0.02
348 277 0.24
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGGCCGGAGAGGCATAATGTGCAAGCGAGGATCAGCCCGTCCCCCGCTGCGTGCTGCTGGTCCCG
CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAATGGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
CGGTCCCCCCTACGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTCCACGATCCGATCTTAGACT
GGGAATGAACTCCATATG
Found at i:14950157 original size:690 final size:683
Alignment explanation
Indices: 14948836--14950592 Score: 1972
Period size: 690 Copynumber: 2.5 Consensus size: 683
14948826 CTGATCGGAT
* * * * *
14948836 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * *
14948901 CGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCGGGTCC
65 CGGCCGAAGAGGCATAATGTGCAAG-CCGGGATCAGCCCGGTCCCCCACTGCGTGCTGCCGGTCC
* ** **
14948966 CACTGCCACAACCCTTAGTTTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * ** * * * * *
14949031 CCCATGAAATAGGCATGCGGGCGTTGAGTCGATCGAAAAGGTAGAATGCGTAAGCCGGGGATCGG
194 CCCACGAAATGGGCGTACGGGCGCTCAGTCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATCAG
** * * * *
14949096 CCCGATCCCCCTTCGTGCTGCCGATCGTGCTGTCGCAACCTTCGGTCCGATCCGATCTTAGACTG
259 CCCGATCCCCCCACGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTG
** * * **
14949161 GGAATGAACTCCATTTGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
324 GGAATGAACTCCAGATGCTTAGACTAGGGAAGAACTCCGTATGCCTAAGTCAACCCACAAAACAA
* * * *
14949226 GTGTGTGGGCGCTCAGCCGGCCGGAGAGGCATAATGCACAAGCCAGGGATTAGCCCGATCCCCCG
389 GCGTGTGGGCGCTCAGCAGGCCGGAGAGGCACAATGCACAAGCCAGGGATCAGCCCGATCCCCCG
14949291 CTGCGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACT
454 CTGCGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACT
** * * * *
14949356 CCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTAGGCGTTGAGCCAATCGAAGAGGCAGAATG
519 CCCTATGCCTAAGCCAACCCACAAAACGGGCATGCAGGCGCTCAGCCAATCGAAGAGGCAGAATG
* * * * * *
14949421 CGTAAGCCGGGGATCGGCTCGGTCCCCCCTTCGTGCTGCTGATCCTGCTGTCGCAACCCTCAGTC
584 CGCAAGCCGAGGATCGGCCCGGTCCCCCCTACATGCTGCTGATCCTGCTATCGCAACCCTCAGTC
* * *
14949486 CGATCCGATCCGATCTTAGATTGGGAATGAACTCCATTTG
649 AGAT--G-T--GATCTTAGACTGGGAATGAACTCCATATG
*
14949526 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGCGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * **
14949591 CAGCC-AGAGAGGCATAATGTGCAAGCCAGGGATTAGCCCAATCCCCCACTGCGTGCTGCCGGTC
65 CGGCCGA-AGAGGCATAATGTGCAAGCC-GGGATCAGCCCGGTCCCCCACTGCGTGCTGCCGGTC
* *
14949655 CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * ** * *
14949720 ACCCACGAAATGGGTGTACAGGCGCTCAACCGGCCGGAGAGGCAGAATACGTAAGTCAGGGATCA
193 ACCCACGAAATGGGCGTACGGGCGCTCAGTCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATCA
** * * **
14949785 GCTTGGTCCCCCCACGTGCTATCGATCCTGCTG-CTGCAACCCTCGATCC-AGTTTGATCTTAGA
258 GCCCGATCCCCCCACGTGCTACCGATCCTGCTGTC-GCAACCCTCGATCCGA-TCCGATCTTAGA
* * * *
14949848 CTGGGAATGAACTCCGGATGCTTAGACTGGGGAAGAACTTCGTATGCCTCAGTCAACCCACAAAA
321 CTGGGAATGAACTCCAGATGCTTAGACTAGGGAAGAACTCCGTATGCCTAAGTCAACCCACAAAA
* * * ** *
14949913 CAAGCGTGTGGGTGCTCAGTAGGTCGGAGAGGCACAATGTGCAAGTC-GAGGATCAGCTCCG-TC
386 CAAGCGTGTGGGCGCTCAGCAGGCCGGAGAGGCACAATGCACAAGCCAG-GGATCAGC-CCGATC
* * * *
14949976 CCCCGTTGCGTGCTG-CTGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAA
449 CCCCGCTGCGTGCTGTC-GATCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAA
* * * ** * *
14950040 TGAACTCCCTATGCCTAAGCTAACCCACAAAACGGGCATGCGGGCGCTCAGTCGGTCGGAGGGGC
513 TGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCAGGCGCTCAGCCAATCGAAGAGGC
* * *
14950105 AGAATGCGCAAGCCGAGGATCGGCCCTGTCCCCCCTACATGCTGCTGATCCTGCTATTGTAACCC
578 AGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACATGCTGCTGATCCTGCTATCGCAACCC
* *
14950170 TCAGTCAGGTGTGATCTTAGACTGGGAATGAACTTCATATG
643 TCAGTCAGATGTGATCTTAGACTGGGAATGAACTCCATATG
*
14950211 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * ** * *
14950276 CGGCCGAAGAGGCATAAT-TCGTAAGCCGAGGATCAGCTCGGTCCCCCGCTATGTGCTGTCAGTC
65 CGGCCGAAGAGGCATAATGT-GCAAGCCG-GGATCAGCCCGGTCCCCCACTGCGTGCTGCCGGTC
*
14950340 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGTC-TCGGAATGAACTCCCTATGCCTAAGCC
128 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
* * * * **
14950404 AACCCACGAAATGAGCGTACGGGCGCTCAGTCGGCTGGAGAGGTAGAATGCGCAAGCTGGGGATC
192 AACCCACGAAATGGGCGTACGGGCGCTCAGTCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATC
* *
14950469 -GACTC-AGTCCCCCCTACGTGCTGTTGATCCTACTGCCTATCCTGCTGTCGCAACCCTCGGTCC
257 AG-CCCGA-TCCCCCC-ACGTGC---T-A--C--C-G---ATCCTGCTGTCGCAACCCTCGATCC
* ** * *
14950532 GAACCGATCAAAGACTGGGAATGAACT-CTGTATGCTTAGAC-ATGGAATGAACTCCGTATGC
307 GATCCGATCTTAGACTGGGAATGAACTCCAG-ATGCTTAGACTAGGGAA-GAACTCCGTATGC
14950593 TTAGACATGG
Statistics
Matches: 890, Mismatches: 146, Indels: 54
0.82 0.13 0.05
Matches are distributed among these distances:
684 4 0.00
685 256 0.29
686 7 0.01
687 1 0.00
688 1 0.00
689 7 0.01
690 534 0.60
691 6 0.01
694 1 0.00
695 1 0.00
697 6 0.01
698 64 0.07
699 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (683 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCC
GGCCGAAGAGGCATAATGTGCAAGCCGGGATCAGCCCGGTCCCCCACTGCGTGCTGCCGGTCCCG
CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAATGGGCGTACGGGCGCTCAGTCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATCAGCC
CGATCCCCCCACGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGG
AATGAACTCCAGATGCTTAGACTAGGGAAGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGC
GTGTGGGCGCTCAGCAGGCCGGAGAGGCACAATGCACAAGCCAGGGATCAGCCCGATCCCCCGCT
GCGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCC
CTATGCCTAAGCCAACCCACAAAACGGGCATGCAGGCGCTCAGCCAATCGAAGAGGCAGAATGCG
CAAGCCGAGGATCGGCCCGGTCCCCCCTACATGCTGCTGATCCTGCTATCGCAACCCTCAGTCAG
ATGTGATCTTAGACTGGGAATGAACTCCATATG
Found at i:14950236 original size:26 final size:26
Alignment explanation
Indices: 14950185--14950237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14950175 CAGGTGTGAT
*
14950185 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14950211 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14950237 C
1 C
14950238 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14950579 original size:26 final size:26
Alignment explanation
Indices: 14950549--14950618 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
14950539 TCAAAGACTG
*
14950549 GGAATGAACTCTGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
14950575 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
14950601 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
14950619 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:14951096 original size:26 final size:26
Alignment explanation
Indices: 14951067--14951117 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14951057 CTGGTTCGAT
* *
14951067 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14951093 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14951118 ATGTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14951266 original size:344 final size:344
Alignment explanation
Indices: 14950750--14951493 Score: 922
Period size: 344 Copynumber: 2.2 Consensus size: 344
14950740 CCGGTCCGAT
* * * * * * *
14950750 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACACAC-AAAACAAGCGTGCGGGCGTTGAG
1 CTTAGACTGGGGATGAACTCCGTATGCGTAAGTCAACCCACGAAAACGAGCGTGCGGGAGCTCAA
* *
14950814 CCGACCGAAAAGGCATAATGCGCAAGCCAGGAATCAGCTCGGTCCCCCTCTGCATACTGCCAGTC
66 CCGACCGAAAAGGCATAATGCGCAAGCCAGGAATCAGCTCGATCCCCCTCTGCATACTACCAGTC
* * *
14950879 CCACTGCCACAACCCTTGATCTGGCTGGGGCTTAGAGATGGAATGAACTCCCTACGCCTAAGCCA
131 CCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCA
* * ***
14950944 ACCCATGAAACGGGTGTCCGGGCGCTCAACC-GACCGGAAAGGCAGAATGTGTAAGCTAGGGATC
196 ACCCAAGAAACGGGAGTCCGGGCGCTCAACCAG-CCGGAAAGGCAGAATGCACAAGCTAGGGATC
* * * * * *
14951008 GGCCTAGTCCCCCCTACGTGCTGCCGATCTTACTGCCGCAACCTTCGGTCTGGTTCGATCTTAGA
260 GGCCTAGTCCCCCCTACGTGCTGCCAATCCTACTGCCGCAACCCTCGGTCTAGTCCAATCTTA-A
*
14951073 T-TGGGAATGAACTCTGTATG
324 TCTGGGAATGAACTCCGTATG
** * *
14951093 CTTAGACTGGGGATGAACTCCGTATATGTAAGTCAACCCACGAAAATGAGCGTGTGGGAGCTCAA
1 CTTAGACTGGGGATGAACTCCGTATGCGTAAGTCAACCCACGAAAACGAGCGTGCGGGAGCTCAA
* * * ** * * *
14951158 CCGATCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCTCGATCCCCCGT-TGCATGCTACCGGT
66 CCGACCGAAAAGGCATAATGCGCAAGCCAGGAATCAGCTCGATCCCCC-TCTGCATACTACCAGT
* * *
14951222 CTCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
130 CCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCC
* * * * * *
14951287 TACCCAAGAAATGGGAGTGCGGGTGCTCAACCAGCCGGAGAGGCAGAATGCACAGGCTAGGGATC
195 AACCCAAGAAACGGGAGTCCGGGCGCTCAACCAGCCGGAAAGGCAGAATGCACAAGCTAGGGATC
* * * * * * *
14951352 GGCCTGGTCCCCCCTACTTGCTGCCAATCCTGCTGTCGTAGCCCTCGGTCTAGTCCAATCTTATT
260 GGCCTAGTCCCCCCTACGTGCTGCCAATCCTACTGCCGCAACCCTCGGTCTAGTCCAATCTTAAT
14951417 CTGGGAATGAACTCCGTATG
325 CTGGGAATGAACTCCGTATG
* * * *
14951437 CTTAGACTGGGGTTAAACTCCGTATGCCTAAGTCAACCCATG-AAACGAGCGTGCGGG
1 CTTAGACTGGGGATGAACTCCGTATGCGTAAGTCAACCCACGAAAACGAGCGTGCGGG
14951494 CGTTTAGCCG
Statistics
Matches: 337, Mismatches: 60, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
343 51 0.15
344 284 0.84
345 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (344 bp):
CTTAGACTGGGGATGAACTCCGTATGCGTAAGTCAACCCACGAAAACGAGCGTGCGGGAGCTCAA
CCGACCGAAAAGGCATAATGCGCAAGCCAGGAATCAGCTCGATCCCCCTCTGCATACTACCAGTC
CCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCA
ACCCAAGAAACGGGAGTCCGGGCGCTCAACCAGCCGGAAAGGCAGAATGCACAAGCTAGGGATCG
GCCTAGTCCCCCCTACGTGCTGCCAATCCTACTGCCGCAACCCTCGGTCTAGTCCAATCTTAATC
TGGGAATGAACTCCGTATG
Found at i:14952231 original size:159 final size:158
Alignment explanation
Indices: 14951806--14952307 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 158
14951796 ACCTCGTATC
* *
14951806 CTTAGACATGGAATAAACTCCGTATGCCTAAGAAAACCC-TCGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCAT-GAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14951870 CC-AATCGGAAAGGCG-GAATGCGTAAG-CTGTGGATCGGCCCGATCCCCCCTGCGTGCTATTGA
65 CCGGAT-GGAGAGG-GAGAATGCGCAAGCCT-AGGATCGGCCCGGTCCCCCCTGCGTGCTATCGA
* * *
14951932 TCCTACTACCGCAACCCTTGATCCGATCTGAT
127 TCCCACTACCACAACCCTTGATCCGATCTGAG
* * * * *
14951964 CTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTCAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * * * *
14952028 TCGGCCGGAGAGGTATAACGCGCAAACC-AGAGATCAGCCTGGTCCCCCTCTGCATGCTATCGGT
65 CCGGATGGAGAGGGAGAATGCGCAAGCCTAG-GATCGGCCCGGTCCCCC-CTGCGTGCTATCGAT
* * * * * *
14952092 CCCATTGCTACAACTCTTGGTCCGA-CTGGGG
128 CCCACTACCACAACCCTTGATCCGATCT-GAG
* * * *
14952123 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** *
14952188 CGGATGGAGAGGGAGAATGCGCAAGCCTAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
66 CGGATGGAGAGGGAGAATGCGCAAGCCTAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCC
* * * * * * * *
14952253 ACTGCCGCAACGCTTGGTCTGGTTTGAT
131 ACTACCACAACCCTTGATCCGATCTGAG
*
14952281 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
14952308 TTAGACGTGG
Statistics
Matches: 267, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 138 0.52
159 123 0.46
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGATGGAGAGGGAGAATGCGCAAGCCTAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCC
ACTACCACAACCCTTGATCCGATCTGAG
Found at i:14952708 original size:501 final size:502
Alignment explanation
Indices: 14951618--14952900 Score: 1224
Period size: 501 Copynumber: 2.6 Consensus size: 502
14951608 GGCTTGGCTA
** * * **
14951618 GGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCTACCCACGAAACGAGCGTACGGGCGCCC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATC
* ** * * * * **
14951683 AGCC-GACTGAAGAGGTAGAATGCGCAAG-TCGAGGAAT-GGCCCGATCCCCCCCAGTGCGCTAT
66 AACCGGAC-GAAGAGACAGAATGCGCAAGCT-GAGG-ATCAGCCCGAT-CCCCCCTGCGTGCTGC
* * * * * * * * * * * *
14951745 CGATCTTGCTGCCGCAACCCTCAGCCCGGTTCAATCTTAGACTGGGAATAAAC-CTCGTATCCTT
127 CGATCCTACTACCGCAACCCTAAGTCCAGTCCGATCTTAGACTAGGAATGAACTC-CATATGCTT
* ** * * * *
14951809 AGACAT-GGAATAAACTCCGTATGCCTAAGAAAACCCTCGAAACGAGCGTGCGGGCGCTCAGCCA
191 AGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCG
* * * * * * * * * ** * ** *
14951873 ATCGGAAAGGCGGAATGCGTAAG-CTGTGGATCGGCCCGATCCCCC-CTGCGTGCTATTGATCCT
255 ACCAGAGAGGCAGAATGCGCAAGTC-GGGGATCGGTCTGGTCCCCCACTATGTGCTCTCAATCTT
** * * * * ** ** *
14951936 ACTACCGCAACCCT-TGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAA
319 GTTGCCACAACCCTCAG-TCTGGCCAAATCTTAGACTGGGAATGAACTCCGCATGCCAAAGTCAA
* * * *
14952000 CCTACGAAACGAGCGTGCGGGTGCTCAGTCGGCCGGAGAGGTATAACGCGCAAACCAGAGATCAG
383 CCCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCATAACGCGCAAACCAGAGATCAG
* * * * * * * *
14952065 CCTGGTCCCCCTCTGCATGCTATCGGTCCCATTGCTACAACTCTTGGTCCGACTG
448 CCCGGTCCCCCTCTGCATGCTACCAGTCCCACTACCACAACCCTCGGTCCGACTG
* * *
14952120 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATC
* * ** * *
14952185 AACCGGATGGAGAGGGAGAATGCGCAAGCCT-AGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGA
66 AACCGGACGAAGAGACAGAATGCGCAAG-CTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGA
* * ** ** ** *
14952249 TCCTACTGCCGCAACGCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
130 TCCTACTACCGCAACCCTAAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
* ** * *
14952314 -GTGGAATGAACTTCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCAGGCGTTCAGCCGA-CT
195 TG-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCA
14952377 GAAGAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTCCCCCACTATGTGCTCTCAATCTTGTTG
259 G-AGAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTCCCCCACTATGTGCTCTCAATCTTGTTG
* *
14952442 CCACAACCCTCAGTCTGGCCAAATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCAT
323 CCACAACCCTCAGTCTGGCCAAATCTTAGACTGGGAATGAACTCCGCATGCCAAAGTCAACCCAC
* * * * * * * * *
14952507 GAAACGAGCGTGTGGGTGCTGAGCCAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGG
388 GAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCATAACGCGCAAACCAGAGATCAGCCCGG
*** * ** *
14952572 TCCCCCTCTTTGTGCTGCCAGTCCTGCTACCACAACCCTCGGTCC-AGTG
453 TCCCCCTCTGCATGCTACCAGTCCCACTACCACAACCCTCGGTCCGACTG
* *
14952621 GGAGCTT-GACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGAT
1 GG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGAT
* * * *
14952685 CAGCCGGCCGAAGAGACAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCTCTGCGTGCTGCCGA
65 CAACCGGACGAAGAGACAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGA
** * *
14952750 TCCTGTTACCGCAACCCTAAGTCCAGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGAC
130 TCCTACTACCGCAACCCTAAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC
* * *
14952815 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCCGGCGCTCAGCCGACCAG
195 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAG
*
14952880 AGAGGCAGGATGCGCAAGTCG
260 AGAGGCAGAATGCGCAAGTCG
14952901 AGCATCGAAC
Statistics
Matches: 635, Mismatches: 131, Indels: 31
0.80 0.16 0.04
Matches are distributed among these distances:
500 4 0.01
501 380 0.60
502 247 0.39
503 3 0.00
504 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (502 bp):
GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATC
AACCGGACGAAGAGACAGAATGCGCAAGCTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGAT
CCTACTACCGCAACCCTAAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCAGA
GAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTCCCCCACTATGTGCTCTCAATCTTGTTGCCA
CAACCCTCAGTCTGGCCAAATCTTAGACTGGGAATGAACTCCGCATGCCAAAGTCAACCCACGAA
ACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCATAACGCGCAAACCAGAGATCAGCCCGGTCC
CCCTCTGCATGCTACCAGTCCCACTACCACAACCCTCGGTCCGACTG
Found at i:14952808 original size:158 final size:158
Alignment explanation
Indices: 14952307--14952808 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 158
14952297 ACTCCATATG
* * *
14952307 CTTAGACGT-GGAATGAACTTCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCAGGCGTTCAG
1 CTTAGAC-TAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
* * * * *
14952371 CCGACTGAAGAGGCAGAATGCGCAAG-TCGGGGATCGGTCTGGTCCCCCACTATGTGCT-CTCAA
65 CCGGCCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCCTCTATGTGCTGC-C-A
* * * * *
14952434 TCTTGTTGCCACAACCCTCAGT-CTGGCCAAAT
127 TCCTGTTACCACAACCCTCAGTCCAGTCC-GAT
* * * * * * * *
14952466 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAGC
* * * * * * *
14952531 CAGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTTTGTGCTGCCAGTCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCA-TCC
* * ** *
14952596 TGCTACCACAACCCTCGGTCCAGTGGGAG
130 TGTTACCACAACCCTCAGTCCAGTCCGAT
* * *
14952625 CTT-GAC-ATGGAATGAA-TTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGATCA
1 CTTAGACTA-GGAATGAACTT-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCA
* * * **
14952687 GCCGGCCGAAGAGACAGAATGCGCAAGCTGGGGATCAGCCCGAT-CCCCTCTGCGTGCTGCCGAT
64 GCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCC-AT
* *
14952751 CCTGTTACCGCAACCCTAAGTCCAGTCCGAT
128 CCTGTTACCACAACCCTCAGTCCAGTCCGAT
14952782 CTTAGACTAGGAATGAACTTCGTATGC
1 CTTAGACTAGGAATGAACTTCGTATGC
14952809 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 61, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 44 0.16
158 100 0.37
159 124 0.46
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCATCCT
GTTACCACAACCCTCAGTCCAGTCCGAT
Found at i:14952823 original size:26 final size:26
Alignment explanation
Indices: 14952782--14952834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14952772 CCAGTCCGAT
*
14952782 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14952808 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14952834 C
1 C
14952835 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14953898 original size:159 final size:158
Alignment explanation
Indices: 14953538--14953984 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 158
14953528 AACTCCGTAT
* *
14953538 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
14953603 CCGGTCGGAGAGACAAAATGCGCAAGCCAGGGA-TCGACTCGATCCCCCCTACGTGCTGTCGATC
66 CCGATCGGAGAG-GAAAATGCACAAGCCAGGGATTGGCCTCGATCCCCCCTACGTGCTGTCGATC
** * * *
14953667 CTGCTGCCATAACCTTCGGTCCGGTCTGA
130 CCACTACCACAACCCTCGGTCCGGTCTGA
* * * * * * * *
14953696 TCTTAGTC-TCAGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
14953760 GCCGATCGAAGAGGAATAATGCACAAGTCGGGGATTGGCCT-GATCCCCCTCTGCGTGCTG-CTG
65 GCCGATCGGAGAGGAA-AATGCACAAGCCAGGGATTGGCCTCGATCCCCC-CTACGTGCTGTC-G
* * *
14953823 GTCCCACTACCACAACCCTCGGTTCGGT-TGGG
127 ATCCCACTACCACAACCCTCGGTCCGGTCT-GA
* *
14953855 GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAAC-AGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCGCTCA
* * * ** *
14953919 GCCAATCGGAGAGGCAAAATGCATAAGCCAGGGATTGGCC-CGGTCCCTTCTACGTGCTGTTGAT
65 GCCGATCGGAGAGG-AAAATGCACAAGCCAGGGATTGGCCTCGATCCCCCCTACGTGCTGTCGAT
14953983 CC
129 CC
14953985 TGTTGCCGCA
Statistics
Matches: 230, Mismatches: 48, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 101 0.44
159 123 0.53
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGGAGAGGAAAATGCACAAGCCAGGGATTGGCCTCGATCCCCCCTACGTGCTGTCGATCC
CACTACCACAACCCTCGGTCCGGTCTGA
Found at i:14955261 original size:158 final size:158
Alignment explanation
Indices: 14954761--14955357 Score: 659
Period size: 158 Copynumber: 3.8 Consensus size: 158
14954751 AACTCCGTAT
* * * * * *
14954761 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCTAACCTACGAAACGAGCGTCCGGTCGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * **
14954825 ACTGACCGGAGAGGCAGATTGCACAAG-CAGGGGATTAGC-CCGACCCTCCCTGCGTGCTATCGA
66 TC-GACCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCTCGGTCCC-CCCTGCGTGCTGCCGA
* * * * *
14954888 TCCTGCTTCCACAACCCTCGATCCGG-TCCGA
128 TCCCGCTGCCACAACCCTCGGTCCGGCT-AGG
* * * * * *
14954919 TCTTAGAC-TCGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
14954983 GTCGACCGAAGAGGCATAATGCGCAAGTCGGGGATAGGCTCGATCCCCCTCTGCGTGCTGCCGGT
65 GTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGCCGAT
*
14955048 CCCGCTGCCACAACCCTCGGTCCAGCTAGG
129 CCCGCTGCCACAACCCTCGGTCCGGCTAGG
* * *
14955078 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
14955143 -CTGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATC
66 TC-GACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATC
*
14955207 CCGCTGCCACAACCCTCGGTCCGGCTGGG
130 CCGCTGCCACAACCCTCGGTCCGGCTAGG
* *
14955236 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14955301 TCGGCCAGAGAGGCAGATTGTGCAAGCCGGGGATCGG-TCCGGTCCCCTCTGCGTGCT
66 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCT-CGGTCCCCCCTGCGTGCT
14955358 ACGAATCCTA
Statistics
Matches: 375, Mismatches: 54, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
157 2 0.01
158 236 0.63
159 135 0.36
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGGCTAGG
Found at i:14955402 original size:317 final size:317
Alignment explanation
Indices: 14954761--14955422 Score: 723
Period size: 317 Copynumber: 2.1 Consensus size: 317
14954751 AACTCCGTAT
* * * *
14954761 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCTAACCTACGAAACGAGCGTCCGGTCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
* * *
14954826 CTGACCGGAGAGGCAGATTGCACAAGCAGGGGATTAGCCCGACCCTCCCTGCGTGCTATCGATCC
66 CTGACCGGAGAGGCAGAATGCACAAGCAGGGGATCAGCCCGACCCTCCCTGCGTGCTACCGATCC
* * * * *
14954891 TGCTTCCACAACCCTCGATCCGGTCCGATCTTAGACTCGGAATGAACTCCGTATGCATAAGTCAA
131 CGCTGCCACAACCCTCGATCCGGTCCGAGCTTAGACTCGGAATGAACTCCCTATGCATAAGCCAA
* * * *
14954956 CCCACGAAACGAGCGTACGGGCGCTGAGTCGACCGAAGAGGCATAATGCGCAAGTCGGGGATAGG
196 CCCACGAAACGAGCGTACGGGCACTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATAGG
* * * * *
14955021 CTCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCAGCTAGG
261 CTCGATCCCCCTCTGCGTGCTGACGATCCCACTGCCACAACCCTCAGTCCAGCTAGA
* * *
14955078 GCTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCA
* * ** * * * *
14955142 GCTGGCCGGAGAGGCAGAATGCGTAAGTC-GGGGATCGGCTCGGTCCC-CCCTGCGTGCTGCCGA
65 ACTGACCGGAGAGGCAGAATGCACAAG-CAGGGGATCAGC-CCGACCCTCCCTGCGTGCTACCGA
* * * *
14955205 TCCCGCTGCCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
128 TCCCGCTGCCACAACCCTCGATCCGGTC-CGAGCTTAGAC-TCGGAATGAACTCCCTATGCATAA
* * * * *
14955268 GCCAACCCACGAAACGGGCGTGCGGGCACTCAGTCGGCC-AGAGAGGCAGATTGTGCAAGCCGGG
191 GCCAACCCACGAAACGAGCGTACGGGCACTCAGTCGACCGA-AGAGGCAGAATGCGCAAGCCGGG
* * * * * * *
14955332 GATCGG-TCCGGT-CCCCTCTGCGTGCT-ACGAATCCTACTGCCGCAACCCTCAGTCCCGGTCCG
255 GATAGGCT-CGATCCCCCTCTGCGTGCTGACG-ATCCCACTGCCACAACCCTCAGTCCAGCT-AG
14955394 A
317 A
*
14955395 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14955423 TTAGATTGGG
Statistics
Matches: 285, Mismatches: 49, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
315 2 0.01
316 42 0.15
317 232 0.81
318 9 0.03
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
CTGACCGGAGAGGCAGAATGCACAAGCAGGGGATCAGCCCGACCCTCCCTGCGTGCTACCGATCC
CGCTGCCACAACCCTCGATCCGGTCCGAGCTTAGACTCGGAATGAACTCCCTATGCATAAGCCAA
CCCACGAAACGAGCGTACGGGCACTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATAGG
CTCGATCCCCCTCTGCGTGCTGACGATCCCACTGCCACAACCCTCAGTCCAGCTAGA
Found at i:14955425 original size:26 final size:26
Alignment explanation
Indices: 14955396--14955448 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14955386 CCGGTCCGAT
14955396 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
14955422 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14955448 C
1 C
14955449 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14955711 original size:356 final size:349
Alignment explanation
Indices: 14955078--14956045 Score: 993
Period size: 356 Copynumber: 2.7 Consensus size: 349
14955068 TCCAGCTAGG
* * * ** * *
14955078 GCTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATACCTAAGCCAACCCACAAAACGAACGAGCGGGCACTCA
* * * *
14955142 GCTGGCCGGAGAGGCAG---AATGCGTAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCG
65 GCTGGCCAGAGAGGCAGAATAATGCGTAAGCCGGGGATC-GATCGGTCCCCCCTGCGTGCTGTCG
* *
14955204 ATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
129 ATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA-ATGGAATGAACTCCGTATGCCTAAG
* * * *
14955269 CCAACCCACGAAACGGGCGTGCGGGCACTCAGTCGGCCAGAGAGGCAGATTGTGCAAGCCGGGGA
193 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGA
** *
14955334 TCGGTCCGGTCCCCTCTGCGTGCT-ACGAAT-C-CTACT-G-CC-G-CAACCC-TCAGTCCCGGT
258 TCGGTCCAATCCCCCCTGCGTGCTGACG-ATCCGCTACTGGTCCGGCCAACCCGT-AGT-CCGGT
14955391 CCGATCTTAGACTGGGAATGAACTCCGTAT
320 CCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * ** *
14955421 GCTTAGA-TTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAACGAGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAACGAGCGGGCACTCA
*
14955485 GCTGGCCGGAGAGGTCAACCGAAGAGCCATAATGCGTAAGCCGGGGATC-AGTCGGTCCCCCTCT
65 GCTGGCCAGAGAGG-----C--AGA---ATAATGCGTAAGCCGGGGATCGA-TCGGTCCCCC-CT
* *
14955549 GCGTGCTGTCGATCCTGCTACCACAACACTCGGTCCGGCTGGGGCTTAGAGATGGAATGAACTCC
118 GCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA-ATGGAATGAACTCC
* **
14955614 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTTGGCTGGAGAGGCAGAATGTG
182 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGTG
* *
14955679 CAAGCCGGGGATCGG-CTCAATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGGTGCCTC
247 CAAGCCGGGGATCGGTC-CAATCCCCCCTGCGTGCTGACGATCC-GCTACTGGTCC--G-G-C-C
* *
14955743 AACCCGTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
305 AACCCGTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
14955788 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAACGAGCGGGCACTCAG
* * * *
14955853 CTGGCCAGAGAGGCAGAAT-A--CGCAAGCCAGGGATCGATCCGATCCCCCCTGCGTGCTGTCAA
66 CTGGCCAGAGAGGCAGAATAATGCGTAAGCCGGGGATCGAT-CGGTCCCCCCTGCGTGCTGTCGA
** ** * *
14955915 TCCTGCTGCTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGAGAATGAACTCCGTAGGCCTAAG
130 TCCTGCTGCCACAACCCTCGGTCCGG-CTGGGGCTTAGAATG-GAATGAACTCCGTATGCCTAAG
* * * * ** * * *
14955979 TCAACCCATGAAACGAGCGTACGGGCGCTGAGCCGATCAGAGAGGCATAATGCGTAAGCCGGGGA
193 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGA
14956044 TC
258 TC
14956046 AGCCCGATCC
Statistics
Matches: 521, Mismatches: 67, Indels: 63
0.80 0.10 0.10
Matches are distributed among these distances:
342 2 0.00
343 65 0.12
348 1 0.00
350 2 0.00
353 2 0.00
354 132 0.25
355 22 0.04
356 170 0.33
357 5 0.01
359 4 0.01
360 4 0.01
361 2 0.00
362 1 0.00
365 1 0.00
367 98 0.19
368 9 0.02
369 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (349 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAACGAGCGGGCACTCAG
CTGGCCAGAGAGGCAGAATAATGCGTAAGCCGGGGATCGATCGGTCCCCCCTGCGTGCTGTCGAT
CCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAATGGAATGAACTCCGTATGCCTAAGCCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCG
GTCCAATCCCCCCTGCGTGCTGACGATCCGCTACTGGTCCGGCCAACCCGTAGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTAT
Found at i:14955801 original size:26 final size:26
Alignment explanation
Indices: 14955763--14955813 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14955753 CCGGTCCGAT
*
14955763 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14955789 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
14955814 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14956244 original size:158 final size:157
Alignment explanation
Indices: 14955788--14956249 Score: 453
Period size: 158 Copynumber: 2.9 Consensus size: 157
14955778 AACTCTGTAT
* * * * *
14955788 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** * ** * *
14955853 CTGGCCAGAGAGGCAGAATACGCAAGCC-AGGGATCGATCCGATCCCCCCTGCGTGCTGTCAATC
66 CCGATCAGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
* * *
14955917 CTGCTGCTGCAACCCTCGGTCCGGTCTGA
130 CTGCTGC-ACAACCCTCCGTCCGGACTGA
* * * * *
14955946 TCTTAGAC-TGAGAATGAACTCCGTAGGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * * * *
14956010 GCCGATCAGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCCTCTACATACTGCTGGTC
65 GCCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
** * *
14956075 CCACTACCACAACCCTCCGTCC-GACTGGG
130 CTGCT-GCACAACCCTCCGTCCGGACT-GA
* *
14956104 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
14956169 CCGATCGGAGAGGTAGAATGTGCAAGCCGAGGATTGGCCCGGTCCCCCCTGCGTGCTGCCGATCT
66 CCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
*
14956234 TGTTGTCACAACCCTC
131 TGCTG-CACAACCCTC
14956250 GGTTAGGTCC
Statistics
Matches: 236, Mismatches: 62, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
157 5 0.02
158 228 0.97
159 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGCACAACCCTCCGTCCGGACTGA
Found at i:14962938 original size:26 final size:26
Alignment explanation
Indices: 14962900--14962952 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14962890 GGCTCAAAAT
14962900 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* *
14962926 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACACCGTATG
14962952 C
1 C
14962953 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:14963975 original size:159 final size:157
Alignment explanation
Indices: 14963623--14964058 Score: 464
Period size: 159 Copynumber: 2.8 Consensus size: 157
14963613 CTATATGCTG
* ** * *
14963623 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAAGACGCTCAACCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
* * *
14963688 TCGGAGAGGCAGAATGCGAAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACT
66 TCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCG-TCCCCCCTGCGTGCTATAGATCCCACT
** ** * * *
14963753 GTCACAACCCTTGGTTTGATCTGATCTT
130 ACCACAACCCTCAGTTCGAACTGAGCTT
* * * * * * *
14963781 AGA-TTGGGAAGGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGCCA
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
14963845 ACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTAGGTCCCG
65 ATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCC-GTCCCCC-CTGCGTGCTATAGATCCCA
*
14963910 CTACCACAACCCTCAG-TCGAACTGCGGCTT
128 CTACCACAACCCTCAGTTCGAACTG-AGCTT
* * *
14963940 AGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAGGAAACG-GCCGTGCGGGCGCTCAGCCG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCG
* * *
14964004 ATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGCTA
65 ATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACC-CGTCCCCCCTGCGTGCTA
14964059 CCGATCCTAC
Statistics
Matches: 225, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 104 0.46
159 119 0.53
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
TCGGAGAGGCAGAATGCGAAAGCCGGGGATCGACCCGTCCCCCCTGCGTGCTATAGATCCCACTA
CCACAACCCTCAGTTCGAACTGAGCTT
Found at i:14964146 original size:26 final size:26
Alignment explanation
Indices: 14964095--14964147 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14964085 CCGATTCGAT
*
14964095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14964121 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14964147 C
1 C
14964148 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14965037 original size:26 final size:26
Alignment explanation
Indices: 14965001--14965053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14964991 CTAGTCCGAT
14965001 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14965027 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14965053 C
1 C
14965054 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14965711 original size:158 final size:157
Alignment explanation
Indices: 14965210--14965711 Score: 444
Period size: 159 Copynumber: 3.2 Consensus size: 157
14965200 CCGGCTGGGG
* * * * * *
14965210 CTTAGACATGGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGCATGCGGGTGCTCAGC
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACGTGCAGGCGCTCAGC
* * * * * *
14965274 C-GACCGAAGAGGCAGAATGCAT-AAGCTGGGGATCGACCCGGTCCCCGCCTGCATGCTATCGAT
66 CGGACAG-AGAGGCAGAATGC-TCAAGC-AGGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGAT
* * * * *
14965337 CCTGCTATCGTAACCATTGGTTCGGTTCGAT
127 CCTGCTGTCGCAACCCTCGGTCCGGTTCGAT
* * * * * *
14965368 CTTAGAC-TGTGAATGAACTCTGTATGCCTAAGTCAACCCATGAAGCGAGCGTCCAGGCGCTGAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-CGTGCAGGCGCTCAG
* * * ** * ** * * *
14965432 -CTGACCGGAGAGGCATAATGGGCAAGCCGAGGATTAGCTCAATCCCCCTCTGCGTGCTGTCGGT
65 CCGGA-CAGAGAGGCAGAATGCTCAAGCAG-GGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT
* * * * * **
14965496 CCTGCTGCCACAACCCTCGATCCAGTTGGGG
127 CCTGCTGTCGCAACCCTCGGTCCGGTTCGAT
* *
14965527 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTGTAGGCGCTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GACGTGCAGGCGCTCAG
*
14965591 CCGGTCAGAGAGGCAGAATGCTCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGGACAGAGAGGCAGAATGCTCAAG-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
14965656 TGCTGTCGCAACCCTCGGTCCGG-TCTGAT
129 TGCTGTCGCAACCCTCGGTCCGGTTC-GAT
*
14965685 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACATGGGAATGAACTCCGTATGC
14965712 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 67, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 99 0.38
159 151 0.57
160 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACGTGCAGGCGCTCAGC
CGGACAGAGAGGCAGAATGCTCAAGCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGTCGCAACCCTCGGTCCGGTTCGAT
Found at i:14965721 original size:26 final size:26
Alignment explanation
Indices: 14965685--14965737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14965675 CCGGTCTGAT
*
14965685 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14965711 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14965737 C
1 C
14965738 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14966445 original size:26 final size:26
Alignment explanation
Indices: 14966407--14966457 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14966397 GGCTCAAAAT
14966407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14966433 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
14966458 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14967496 original size:26 final size:26
Alignment explanation
Indices: 14967458--14967510 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14967448 GGCTCAAAAT
*
14967458 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14967484 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14967510 C
1 C
14967511 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14967785 original size:159 final size:159
Alignment explanation
Indices: 14967493--14967985 Score: 363
Period size: 159 Copynumber: 3.1 Consensus size: 159
14967483 GCTTAGACAT
* * * * *
14967493 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAGCCAACCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCATGCAGGCGCTAAGCCAACCGAAG
* * ** **
14967558 AGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTTCCCCCCTATCTGCTATCGATCTTACTGCTGC
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTTCCCCCCTATCTGCTATCGATCCCACTGCCAC
14967623 AACCGTTGGTTCGGTCTGATCTTAGGCTG
131 AACCGTTGGTTCGGTCTGATCTTAGGCTG
* * * * * * *
14967652 GGAATTAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTAAGTCAGCCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCATGCAGGCGCTAAGCCAACCGAAG
* * * *
14967717 AGGCATAATGCGCAAG-CTGGTGATCGGCCCAG-TCCCCCTCTA-CGTGCTGTCGGTCCCACTGC
66 AGGCAGAATGCGCAAGCCAGG-GATCGGCCCAGTTCCCCC-CTATC-TGCTATCGATCCCACTGC
* * * * * *
14967779 CACAACCCTCGGTCCAG-CTGGAGCTTAGACAT-
128 CACAACCGTTGGTTCGGTCT-GATCTTAGGC-TG
* * * * * * * * * * * * *
14967811 GGAATAAACTCCCTATGCCTAAGCTAACCCAGGAAACAGGCGTGCGGGCACTCAGCCGACTGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCATGCAGGCGCTAAGCCAACCGAAG
* ** * * * * *
14967876 AGGCAGAATGCGCAAGCCGGGGATCGGGTC-GGT-CCCCCTA-CGTGTTATCGATCCTACTACCG
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTTCCCCCCTATC-TGCTATCGATCCCACTGCCA
* *** * * *
14967938 CAACCCTCCATCCGGTCTGATCTTAGACTA
130 CAACCGTTGGTTCGGTCTGATCTTAGGCTG
*
14967968 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
14967986 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 61, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 19 0.07
159 184 0.70
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCATGCAGGCGCTAAGCCAACCGAAG
AGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTTCCCCCCTATCTGCTATCGATCCCACTGCCAC
AACCGTTGGTTCGGTCTGATCTTAGGCTG
Found at i:14969049 original size:26 final size:26
Alignment explanation
Indices: 14969020--14969072 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14969010 CCGGTCCGAT
14969020 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14969046 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14969072 C
1 C
14969073 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14969554 original size:26 final size:26
Alignment explanation
Indices: 14969525--14969577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14969515 CCGATCCAAT
*
14969525 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
14969551 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14969577 C
1 C
14969578 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14969956 original size:26 final size:26
Alignment explanation
Indices: 14969905--14969957 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14969895 CCGATCCGAT
*
14969905 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
*
14969931 CTTAGACATGG-AATGAACTCTATATG
1 CTTAGAC-TGGAAATGAACTCCATATG
14969957 C
1 C
14969958 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:14970298 original size:159 final size:161
Alignment explanation
Indices: 14969930--14970298 Score: 383
Period size: 159 Copynumber: 2.3 Consensus size: 161
14969920 AACTCCGTAT
* *
14969930 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGTGTGCGTGCGGGCAC
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACAAGTGTACGTGC-GG-AC
* * * *
14969995 TCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCCTGCGTCATGTC
64 TCAGTCGATCGAAGAGGCAGAATGCGAAAGCAGAGGAACGGCCCGATCCCCCCCTGCGTCATGTC
* * **
14970060 AATCCTGCTGCCTTAACCCTCGGTCCGGTCTGA
129 AATCCCGCTACCACAACCCTCGGTCCGGTCTGA
* * * * *
14970093 TCTTAGAC-TGGGAACGAACTCTGTATGCCTAAGTCAACACACGAAACAAGTGTACAG-GC-G-C
1 GCTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACGAAACAAGTGTAC-GTGCGGAC
* * * *
14970154 TGAGTCGATCGAAGAGGCATAATGCGAAAATCAG-GGAACGGCCCGATCCCCCTCTGCGTGC-TG
64 TCAGTCGATCGAAGAGGCAGAATGCG-AAAGCAGAGGAACGGCCCGATCCCCCCCTGCGT-CATG
* *
14970217 TCGATCCCGCTACCACAACCCTCGGTCCGG-CTTGG
127 TCAATCCCGCTACCACAACCCTCGGTCCGGTC-TGA
* ** * * *
14970252 GCTTAGACATGAAATGAACTCCCTATGCGTATGCCAACCCATGAAAC
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAAC
14970299 GGGCGTGCGG
Statistics
Matches: 169, Mismatches: 31, Indels: 16
0.78 0.14 0.07
Matches are distributed among these distances:
158 1 0.01
159 111 0.66
160 6 0.04
161 1 0.01
162 1 0.01
163 48 0.28
164 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (161 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACAAGTGTACGTGCGGACTC
AGTCGATCGAAGAGGCAGAATGCGAAAGCAGAGGAACGGCCCGATCCCCCCCTGCGTCATGTCAA
TCCCGCTACCACAACCCTCGGTCCGGTCTGA
Found at i:14970447 original size:26 final size:26
Alignment explanation
Indices: 14970411--14970463 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14970401 CTGGTCCAAT
14970411 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14970437 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14970463 C
1 C
14970464 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14971482 original size:26 final size:26
Alignment explanation
Indices: 14971446--14971498 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14971436 TCGATTTGAT
*
14971446 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
* *
14971472 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
14971498 C
1 C
14971499 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:14972851 original size:157 final size:156
Alignment explanation
Indices: 14972375--14972862 Score: 433
Period size: 158 Copynumber: 3.1 Consensus size: 156
14972365 TTAGACGTGA
* * * * * ** *
14972375 AATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCCGGAGAG
1 AATGAACTCCATATGCCTAAGCCAAGCAACGAAACGAGCGTGCAGGCGTTCAGCCGGCCGAAG-G
* * * * * * *
14972440 GAAGAATGCGCAAGCTGAGGATTGGCCTGGTCCCCCCTATGTGCTGTCGATCCTGCTGTCGCAAA
65 GTAGAATGCGCAAGCCGGGGATAGGCC-GGTCCCCCCTGTGTGCTGTCGATCCTGCTGTCACAAC
* **
14972505 CCTCAGTCCGGTCCGATCTTAGGCTGGG
129 CCTCAGTCCGGTCCGATCTTAGACAAGG
* * * ** * ** *
14972533 AATGAACTCCATATGCCTAAGTCAAGCCACGAAGCGAGCGTGTGGGCGTTGAGCCGGAAGAAGAG
1 AATGAACTCCATATGCCTAAGCCAAGCAACGAAACGAGCGTGCAGGCGTTCAGCCGGCCGAAGGG
* * * * * * * *
14972598 TCATAATGCGTAAGCCGGGGATCAGCCCTGTCCTCCTCTGTGTGCTGTTGGT-CTAGCTGCCACA
66 T-AGAATGCGCAAGCCGGGGAT-AGGCCGGTCC-CCCCTGTGTGCTGTCGATCCT-GCTGTCACA
* * ** *
14972662 ACCCTCGGTCCGG-CTGGGGCTTAGACATGG
127 ACCCTCAGTCCGGTC-CGATCTTAGACAAGG
* * * * *
14972692 AATGAACTCCCTATGCCTAAGCCAA-CAAATGAAATGTGCGTGCAGTCGTTCAGCCGGCCGAAGG
1 AATGAACTCCATATGCCTAAGCCAAGC-AACGAAACGAGCGTGCAGGCGTTCAGCCGGCCGAAGG
**
14972756 GTAGAATGCGCAAGCCGGGGATAGGCTCGGTCCCCCCTGTGTGCTACCGATCCTGCTGTCACAAC
65 GTAGAATGCGCAAGCCGGGGATAGGC-CGGTCCCCCCTGTGTGCTGTCGATCCTGCTGTCACAAC
*
14972821 CCTCAATCCGGTCCGATCTTAGACAAGG
129 CCTCAGTCCGGTCCGATCTTAGACAAGG
*
14972849 AATAAACTCCATAT
1 AATGAACTCCATAT
14972863 ACTTAGACTC
Statistics
Matches: 254, Mismatches: 67, Indels: 19
0.75 0.20 0.06
Matches are distributed among these distances:
157 59 0.23
158 101 0.40
159 94 0.37
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (156 bp):
AATGAACTCCATATGCCTAAGCCAAGCAACGAAACGAGCGTGCAGGCGTTCAGCCGGCCGAAGGG
TAGAATGCGCAAGCCGGGGATAGGCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGTCACAACCC
TCAGTCCGGTCCGATCTTAGACAAGG
Found at i:14973419 original size:159 final size:158
Alignment explanation
Indices: 14973022--14973638 Score: 552
Period size: 159 Copynumber: 3.9 Consensus size: 158
14973012 CCAGTTCTGC
** * * *
14973022 TGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCAGTCCAGCTCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * *
14973087 ATGAAACAAGCGTGCGGGCGCTCTGCCAATCGGAGAGGTAGAATGCGCAAGCTAGGGATCGGCCC
66 ACGAAACGAGCATGCGGGTGCTCAGCCAATCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCC
* * * *
14973152 GGTCCCCC-CTGCATGCTACCAAT--CT
131 GGTCCCCCTCTGCGTGCTGCCAGTCCCA
* *** * * *
14973177 TGCTACTGGTCCTACTAGGAAT-GAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTA
1 TGCCAC-AACCCT-C-A-G--TCCAGCT-C-GA-GCTTAGACATGGAATGAACTCCGTATGCCTA
* * *
14973241 AGCCAACCCATGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCTGGG
57 AGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCCAATCGGAGAGGCAGAATGCACAAGCTGGG
**
14973306 GATCGGCCCGGTGCCCCC-CTGCGTGCTATC-GATCCTGCA
122 GATCGGCCCGGT-CCCCCTCTGCGTGCTGCCAG-TCC--CA
* * * *
14973345 -GCCACAACCCTC-GATCC-GGTCCGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAA
1 TGCCACAACCCTCAG-TCCAGCT-CGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
14973406 CCCACGAAACGAGCGTGCGGGCACTAAGCCAATCGGAGAGGCATAATGCGCAAGCTGGGGATCAG
63 CCCACGAAACGAGCATGCGGGTGCTCAGCCAATCGGAGAGGCAGAATGCACAAGCTGGGGATCGG
14973471 CCCGGTCCCCCTCTGCGTGCTGCCAGTCCCA
128 CCCGGTCCCCCTCTGCGTGCTGCCAGTCCCA
* * * * *
14973502 TTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATTAACTCCTTATTCCTAAGCCAACC
1 -TGCCACAACCCTCAGTCCAGCTCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * **
14973567 CACGAAACGAGCATGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCATAAGCCAGGGATCGGCC
65 CACGAAACGAGCATGCGGGTGCTCAGCCAATCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCC
*
14973632 CGATCCC
130 CGGTCCC
14973639 TTCCTGTGTC
Statistics
Matches: 368, Mismatches: 70, Indels: 44
0.76 0.15 0.09
Matches are distributed among these distances:
155 5 0.01
156 3 0.01
157 2 0.01
158 6 0.02
159 213 0.58
160 8 0.02
161 6 0.02
162 1 0.00
163 99 0.27
164 16 0.04
165 1 0.00
166 3 0.01
167 4 0.01
168 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TGCCACAACCCTCAGTCCAGCTCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCATGCGGGTGCTCAGCCAATCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCC
GGTCCCCCTCTGCGTGCTGCCAGTCCCA
Found at i:14974230 original size:26 final size:26
Alignment explanation
Indices: 14974201--14974253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14974191 TCGATCCGAT
*
14974201 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
14974227 CTTAGACTGGGGAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
14974253 C
1 C
14974254 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:14974759 original size:159 final size:159
Alignment explanation
Indices: 14974596--14974950 Score: 381
Period size: 159 Copynumber: 2.2 Consensus size: 159
14974586 ACTTTGTACA
* * * *
14974596 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAACC-GATCGAAAAGGCATAATG-TGCAA
1 CCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCAGCT-GAAAAGGCATAATGCT-CAA
* ** **
14974659 GCTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGAC
64 GCTAGGGATCAGCCCAATCCCCCTCTACGTGCTACCGGTCCTGCTGCCACAACCCTCAGTCCGAC
*
14974724 TGGGGCTTAGACATGGAATTAACTCCCTATG
129 TGGGGCTTAGACATGGAATGAACTCCCTATG
* * * * * * * *
14974755 CCTAAGCCAACCCACGGAACGGGCATACGGGCGCTCAGCCAGCTGGAAAGGCATAATGCTCTAGC
1 CCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCAGCTGAAAAGGCATAATGCTCAAGC
* * * * ** * * ** *
14974820 TAGGGATCGGCCCAATCGCCTTTTGTGTGCTACCGGTCTTGCTGCCATAACCCTTTGTCCGATTG
66 TAGGGATCAGCCCAATCCCCCTCTACGTGCTACCGGTCCTGCTGCCACAACCCTCAGTCCGACTG
*
14974885 GGGCTTAGACATGGAATGAACTCGCTATG
131 GGGCTTAGACATGGAATGAACTCCCTATG
* * *
14974914 CCTATGCCAACCCATGAAATGGGGGTGCGGGCACTCA
1 CCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
14974951 GTTGGCCGGA
Statistics
Matches: 156, Mismatches: 38, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
159 153 0.98
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
CCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCAGCTGAAAAGGCATAATGCTCAAGC
TAGGGATCAGCCCAATCCCCCTCTACGTGCTACCGGTCCTGCTGCCACAACCCTCAGTCCGACTG
GGGCTTAGACATGGAATGAACTCCCTATG
Found at i:14974987 original size:159 final size:159
Alignment explanation
Indices: 14974694--14975032 Score: 365
Period size: 159 Copynumber: 2.1 Consensus size: 159
14974684 TACGTGCTGT
*
14974694 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATTAACTCCCTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * * * * *
14974759 AGCCAACCCACGGAACGGGCATACGGGCGCTCAGCCAGCTGGAAAGGCATAATGCTCTAGCTAGG
66 AGCCAACCCACGAAACGGGCATACGGGCACTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCAGA
14974824 GATCGGCCCAATCGCCTTTTGTGTGCTAC
131 GATCGGCCCAATCGCCTTTTGTGTGCTAC
* * ** * *
14974853 CGGTCTTGCTGCCATAACCCTTTGTCCGATTGGGGCTTAGACATGGAATGAACTCGCTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * ** * *** *
14974918 TGCCAACCCATGAAATGGGGGTGCGGGCACTCAGTTGGCCGGAGAGGCAGAATGCGCAAGCCAGA
66 AGCCAACCCACGAAACGGGCATACGGGCACTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCAGA
* * *** *
14974983 GATCGACCCGATC-CCCCCTGCGTGCTAC
131 GATCGGCCCAATCGCCTTTTGTGTGCTAC
* * *
14975011 CGATACTGCTACCACAACCCTC
1 CGGTCCTGCTGCCACAACCCTC
14975033 GATCCGATCC
Statistics
Matches: 143, Mismatches: 37, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
158 27 0.19
159 116 0.81
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGGGCATACGGGCACTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCAGA
GATCGGCCCAATCGCCTTTTGTGTGCTAC
Found at i:14975307 original size:26 final size:26
Alignment explanation
Indices: 14975257--14975307 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14975247 CGATCCGATT
*
14975257 TTAGACTGGGAATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
14975283 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
14975308 ACGAAGCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14975541 original size:158 final size:158
Alignment explanation
Indices: 14975375--14975775 Score: 423
Period size: 158 Copynumber: 2.5 Consensus size: 158
14975365 CATAAACTGA
* *
14975375 GGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGA-TCCGAT
1 GGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGACT-CGAT
* * * * *
14975439 TTTAGA-TTGGGAATTGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAGGCGCTGA
65 CTTAGACAT-GGAA-TGAACTCCCTATGCCTAAGCCAAACCATGAAACGAGCGTGCAGGCGCTCA
* *
14975503 GCCGACCGAAGAGGCATA-TGCGCAAGCCAG
128 GCCGACCGAACAGGCAGACTGCGCAAGCCAG
* * * * * * * *
14975533 GGATCGACCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAATCCGACTGGGT
1 GGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGACTCGAT
* * * *
14975598 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGGGCTCAGC
65 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGAGCGTGCAGGCGCTCAGC
** * * *
14975663 CGGTCGGACAGGCAGACTGCGTAAGCCGG
130 CGACCGAACAGGCAGACTGCGCAAGCCAG
* * * * * * *
14975692 GGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTG-GTCAAAT
1 GGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGACTC-GAT
*
14975756 CTTAGACTTGGAATGAACTC
65 CTTAGACATGGAATGAACTC
14975776 TGTATGATTA
Statistics
Matches: 196, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 122 0.62
159 71 0.36
160 2 0.01
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (158 bp):
GGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGACTCGATC
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGAGCGTGCAGGCGCTCAGCC
GACCGAACAGGCAGACTGCGCAAGCCAG
Found at i:14977028 original size:26 final size:26
Alignment explanation
Indices: 14976980--14977030 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14976970 AGTACGATCA
**
14976980 TAGACTAGGCATGAACTTTGTATGCT
1 TAGACTAGGCATGAACTCCGTATGCT
* *
14977006 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGCATGAACTCCGTATGC
14977031 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTAGGCATGAACTCCGTATGCT
Found at i:14977731 original size:26 final size:26
Alignment explanation
Indices: 14977691--14977741 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14977681 TGCTCAAAAT
14977691 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
14977717 CTTAGACATGG-AATGAACTCCGTAT
1 CTTAGAC-TGGTAATGAACTCCGTAT
14977742 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:14977916 original size:26 final size:26
Alignment explanation
Indices: 14977875--14977927 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14977865 TCGGTCTGAT
*
14977875 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14977901 CTTAGACTAGGG-ATGAAATCCGTATG
1 CTTAGACT-GGGAATGAAATCCGTATG
14977927 C
1 C
14977928 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14978925 original size:158 final size:158
Alignment explanation
Indices: 14978631--14978974 Score: 390
Period size: 158 Copynumber: 2.2 Consensus size: 158
14978621 AACTCTGCAT
* **
14978631 GCTTAGACATGGAATGAACTCCGTATGCCCGAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
14978696 TCGGCCGGAAAGGCAGAATGCGCAAGCAAGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTCC
66 CCGGCCGGAAAGGCAGAATGCACAAGCAAGGATCGGCCCGATCCCCCTCTACGTGCTACCGATCC
14978761 CACTGCCACAACCCTCGGTCTGGTTGGG
131 CACTGCCACAACCCTCGGTCTGGTTGGG
* * * *
14978789 GCTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * ** * * * * *
14978853 GCCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCTGGTCCCTCT-TGCGTGCTGCCGAT
65 GCCGGCCGGAAAGGCAGAATGCACAAGC-AAGGATCGGCCCGATCCCCCTCTACGTGCTACCGAT
** * ***
14978917 CCTGCTGCCGCAACCCTCGGT-TCGGTTCAA
129 CCCACTGCCACAACCCTCGGTCT-GGTTGGG
*
14978947 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14978975 TTAGACTAGG
Statistics
Matches: 155, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 4 0.03
158 133 0.86
159 18 0.12
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAAAGGCAGAATGCACAAGCAAGGATCGGCCCGATCCCCCTCTACGTGCTACCGATCC
CACTGCCACAACCCTCGGTCTGGTTGGG
Found at i:14978989 original size:26 final size:26
Alignment explanation
Indices: 14978948--14979000 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14978938 TCGGTTCAAT
14978948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14978974 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14979000 C
1 C
14979001 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14979563 original size:158 final size:158
Alignment explanation
Indices: 14979170--14979565 Score: 356
Period size: 159 Copynumber: 2.5 Consensus size: 158
14979160 AACTCTCTAT
* *
14979170 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCCTGT-GGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AG-GTGTCGGGTGCTCA
** * **
14979234 GCCGGTCGGAGCGATAGAATACGCAAGCTAGGGATCAGCCCAGTCCCCCACTACATGCTGTCGAT
64 GCCGACCGGAGAGGCAGAATACGCAAGCTAGGGATCAGCCCAGTCCCCCACTACATGCTGTCGAT
* * * * * *
14979299 CCTGCTACCTTAACCCTCGGTCTGATTTGA
129 CCCGCTACCATAACACTCAGTCCGATCTGA
* * * * * * * * * *
14979329 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAACAAGCGTCCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGT-CGGGTGCTCA
* * * * ** *
14979393 GCC-AGCCAGAGAGGCATAATGCGCAAGCTGGGGATC-GACCC-GATCCCCCTTTGA-GTGCTGT
64 GCCGA-CCGGAGAGGCAGAATACGCAAGCTAGGGATCAG-CCCAG-TCCCCCACT-ACATGCTGT
* *
14979454 CGATCCCGCTGCCATAACACTCAGTCCGA-CTGG
125 CGATCCCGCTACCATAACACTCAGTCCGATCTGA
* *
14979487 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGT-CGGGTGCTCAG
14979552 CCGACCGGAGAGGC
65 CCGACCGGAGAGGC
14979566 CAGTCAGAGA
Statistics
Matches: 182, Mismatches: 46, Indels: 19
0.74 0.19 0.08
Matches are distributed among these distances:
157 2 0.01
158 67 0.37
159 112 0.62
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTCGGGTGCTCAGC
CGACCGGAGAGGCAGAATACGCAAGCTAGGGATCAGCCCAGTCCCCCACTACATGCTGTCGATCC
CGCTACCATAACACTCAGTCCGATCTGA
Found at i:14979873 original size:26 final size:26
Alignment explanation
Indices: 14979844--14979897 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14979834 GGTCCGATCT
14979844 TAGAC-TGAGAATGAACTCCGTATGCC
1 TAGACGTG-GAATGAACTCCGTATGCC
14979870 TAGACGTGGAATGAACTCCGTATGCC
1 TAGACGTGGAATGAACTCCGTATGCC
14979896 TA
1 TA
14979898 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACGTGGAATGAACTCCGTATGCC
Found at i:14980166 original size:159 final size:159
Alignment explanation
Indices: 14979877--14980369 Score: 552
Period size: 159 Copynumber: 3.1 Consensus size: 159
14979867 GCCTAGACGT
* * * *
14979877 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA-ACCAGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGA-CCGGA
* * * * *
14979941 GATGCAGAATGCGTAAGTCG-GGCACCGACCCGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACC
65 GAGGCAGAATGCGTAAGTCGAGG-ATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
*
14980005 ACAACCCTCGATCTGGTTCGATCTTAGACTG
129 ACAACCCTCGATCCGGTTCGATCTTAGACTG
* * * * *
14980036 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCGCTGAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAG
* * * * **
14980101 AGGCATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATGTTGCTGCCAC
66 AGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCAC
* * * **
14980166 AACCCTCGGTCCGGCTGGGGCTTAGACAT-
131 AACCCTCGATCCGGTTCGATCTTAGAC-TG
** * *
14980195 GGAATGAACTCTATATGCCTAAGCCAACCCACGAAACG-GATGTGCAGGCGCTCAGTCGACCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCGCTCAGTCGACCGGA
* * * *
14980259 GAGGAAGAATGCGTAAGCCTAGGATC-AGCCCGGTCCCCC-CTGCGTGCTG-CAGATCCTGCTGG
65 GAGGCAGAATGCGTAAGTCGAGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGC
* *
14980321 CACAACCCTCGATCCAGTTTGATCTTAGACTG
128 CACAACCCTCGATCCGGTTCGATCTTAGACTG
14980353 GGAATGAACT-CGTATGC
1 GGAATGAACTCCGTATGC
14980370 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 53, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 7 0.03
158 53 0.19
159 209 0.76
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAG
AGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGATCCGGTTCGATCTTAGACTG
Found at i:14980384 original size:25 final size:26
Alignment explanation
Indices: 14980344--14980395 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
14980334 CCAGTTTGAT
14980344 CTTAGACTGGGAATGAAC-TCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14980369 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
14980395 C
1 C
14980396 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14980445 original size:697 final size:692
Alignment explanation
Indices: 14978632--14980453 Score: 1846
Period size: 697 Copynumber: 2.6 Consensus size: 692
14978622 ACTCTGCATG
** * * *
14978632 CTTAGACAT-GGAATGAACTCCGTATGCCCGAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * ** *
14978696 TCGGCCGGAAAGGCAGAATGCGCAAGCAAGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTCC
65 TCGACCGGAGAGGCATAATGCGCAAGCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCC
* * *
14978761 CACTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAA
* * * * ** * * ** * *
14978826 CCCATGAAATGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAG-CTGGGGATCG
194 CCCACGAAA-CGGTGTGCGGGCGCTCAGCCGACCGAAGAGGAAGAATGCGTAAGCCT-AGGATCA
* * * * * * * *
14978890 GCCTGGTCCCTCTTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTTCAATCTTAGAC
257 GCCCGGTCCCCCCTGCGTGCTGCAGATCCTGCTGGC-CAACCCTCGGTCCAGTT-TATCTTAGAC
*
14978955 TGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTCAGTCAACCCATGAAAT
320 TGGGAATGAACT-CGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAAT
** * * * * * ***
14979020 GAAAGTGCGGGCACTCAGCCGATCAGAAAGGGAGAATGCGCAAGCCGGGGATCGACTTGGTCCCC
384 GAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCC
*
14979085 GCCTGCGTGCTGCCAATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
449 GCCTGCGTGCTGCCAATCCTACTACTGGTCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
*
14979150 ACTAGGAATGAACTCTCTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
514 ACTAGGAATGAACTCTCTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
** * * * *
14979215 ACGAGCCTGTGGGTGCTCAGCCGGTCGGAGCGATAGAATACGCAAGCTAGGGATCAGCCCAGTCC
579 ACGAGCCTGCAGGCGCTCAACCAGTCGGA-CGATAGAATACGCAAGCTAGGGACCAGCCCAGTCC
** * *
14979280 CCCACTACATGCTGTCGATCCTGCTACCTTAACCCTCGGTCTGATTTGAT
643 CCCACTACATGCTGTCGATCCTGCTACCACAACCCTCGATCTGATTCGAT
* * * * * *
14979330 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAACAAGCGTCCGGGCGTTGAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
* * * *
14979394 CCAGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTTTGA-GTGCTGTCGAT
66 CGA-CCGGAGAGGCATAATGCGCAAGC-GAGGATCGACCCGATCCCCCTCT-ACGTGCTGTCGAT
* * * * *
14979458 CCCGCTGCCATAACACTCAGTCCGACT-GGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCC
128 CCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCC
* *
14979522 AACCCACGAAACAGGTGTGCGGGTGCTCAGCCGACCGGAGAGGCCAGTCAGAGAGGCATAATCCG
192 AACCCACGAAAC-GGTGTGCGGGCGCTCAGCCGACC-GA-A-G--AG---GA-A-G---AATGCG
* * *
14979587 TAAGCC-AGGGATCAGCCCGGTCCTCCTCTGCGTGCTACCA-ATCCTGCT-G-------TTGGTC
243 TAAGCCTA-GGATCAGCCCGGTCC-CCCCTGCGTGCT-GCAGATCCTGCTGGCCAACCCTCGGTC
* * * ** * *** * ** * *
14979642 CTG-CTACCACA-ACCCTTGGTCCG-GCT-G-GGGCTTAGACAAGGAATGAACTCTGTATGCCTA
305 CAGTTTATCTTAGA--CTGGGAATGAACTCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTA
* * * * * * * *
14979702 AGCCAACCAATGAAACGAGCGTACGGGCACCCAACCGGTCGGAGAGGCAAAATGCGCAAGCTAGG
368 AGTCAACCCATGAAATGAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGG
* * * * ** *
14979767 GATCGGCCCAGTCCCC-CCTGTGTGCTGTCGATCCTACTGTTGGTCCTGCTGCCGCAACCCTCGG
433 GATCGACCCAGTCCCCGCCTGCGTGCTGCCAATCCTACTACTGGTCCTACTGCCGCAACCCTCGG
*
14979831 TCTGGTCCGATCTTAGACT-GAGAATGAACTC-CGTATGCCTAGACGTGGAATGAACTCCGTATG
498 TCTGGTCCGATCTTAGACTAG-GAATGAACTCTC-TATGCCTAGACATGGAATGAACTCCGTATG
** * * *
14979894 CCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACCAGTCGGA-GATGCAGAATGCGTAAG
561 CCTAAGCCAACCCACAAAACGAGCCTGCAGGCGCTCAACCAGTCGGACGAT--AGAATACGCAAG
* * * *** * *
14979958 -TCGGGCACC-GACCCGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCACAACCCTCGATCTGG
624 CTAGGG-ACCAG-CCCAGTCCCCCACTACATGCTGTCGATCCTGCTACCACAACCCTCGATCTGA
14980021 TTCGAT
687 TTCGAT
* *
14980027 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
**
14980092 CGACCGGAGAGGCATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATGT
66 CGACCGGAGAGGCATAATGCGCAAG-CGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCC
* *
14980157 TGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTATATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAA
* *
14980222 CCCACGAAACGGATGTGCAGGCGCTCAGTCGACCGAAGAGGAAGAATGCGTAAGCCTAGGATCAG
194 CCCACGAAACGG-TGTGCGGGCGCTCAGCCGACCGAAGAGGAAGAATGCGTAAGCCTAGGATCAG
*
14980287 CCCGGTCCCCCCTGCGTGCTGCAGATCCTGCTGGCACAACCCTCGATCCAGTTTGATCTTAGACT
258 CCCGGTCCCCCCTGCGTGCTGCAGATCCTGCTGGC-CAACCCTCGGTCCAGTTT-ATCTTAGACT
14980352 GGGAATGAACTCGTATGCTTAGACTAGGGATGAACT-TCGTATGCCTAAGTCAACCCATGAAATG
321 GGGAATGAACTCGTATGCTTAGACTAGGGATGAACTCT-GTATGCCTAAGTCAACCCATGAAATG
* * *
14980416 AGCGTACTGGCACTTC-GCCAACCGGAGAGGCAGAATGC
385 AGCGTACGGGCAC-TCAGCCGATCGGAGAGGCAGAATGC
14980454 ATAAGCCGTG
Statistics
Matches: 894, Mismatches: 175, Indels: 111
0.76 0.15 0.09
Matches are distributed among these distances:
683 2 0.00
684 19 0.02
685 27 0.03
686 1 0.00
688 1 0.00
689 1 0.00
690 2 0.00
693 8 0.01
694 6 0.01
695 9 0.01
696 12 0.01
697 402 0.45
698 291 0.33
699 49 0.05
700 3 0.00
701 6 0.01
702 5 0.01
703 8 0.01
706 1 0.00
707 1 0.00
708 1 0.00
711 20 0.02
712 18 0.02
713 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (692 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
CGACCGGAGAGGCATAATGCGCAAGCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACC
CACGAAACGGTGTGCGGGCGCTCAGCCGACCGAAGAGGAAGAATGCGTAAGCCTAGGATCAGCCC
GGTCCCCCCTGCGTGCTGCAGATCCTGCTGGCCAACCCTCGGTCCAGTTTATCTTAGACTGGGAA
TGAACTCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTA
CGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCGCCTGCG
TGCTGCCAATCCTACTACTGGTCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGA
ATGAACTCTCTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCC
TGCAGGCGCTCAACCAGTCGGACGATAGAATACGCAAGCTAGGGACCAGCCCAGTCCCCCACTAC
ATGCTGTCGATCCTGCTACCACAACCCTCGATCTGATTCGAT
Found at i:14980522 original size:78 final size:78
Alignment explanation
Indices: 14980387--14980532 Score: 188
Period size: 78 Copynumber: 1.9 Consensus size: 78
14980377 AGGGATGAAC
* * *
14980387 TTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACTGGCACTTCGCCAACCGGAGAGGCAGAAT
1 TTCGTATGCCTAAGTCAACCCATGAAATGAGCGCACGGGCACTTCGCCAACCAGAGAGGCAGAAT
14980452 GCATAAGCCGTGG
66 GCATAAGCCGTGG
* ** * *
14980465 TTCGTATGCCTAAG-CAAACCCATGAAATGAGTGCACGGGTGC-TCAGCCAGCCAGAGAGGTAGA
1 TTCGTATGCCTAAGTC-AACCCATGAAATGAGCGCACGGGCACTTC-GCCAACCAGAGAGGCAGA
14980528 ATGCA
64 ATGCA
14980533 CAGGCCAGGG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
77 3 0.05
78 55 0.95
ACGTcount: A:0.29, C:0.25, G:0.27, T:0.18
Consensus pattern (78 bp):
TTCGTATGCCTAAGTCAACCCATGAAATGAGCGCACGGGCACTTCGCCAACCAGAGAGGCAGAAT
GCATAAGCCGTGG
Found at i:14981618 original size:26 final size:26
Alignment explanation
Indices: 14981577--14981629 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14981567 TCGGTTCAAT
14981577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14981603 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14981629 C
1 C
14981630 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.