Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 117 of 402
Found at i:14982192 original size:158 final size:158
Alignment explanation
Indices: 14981799--14982194 Score: 356
Period size: 159 Copynumber: 2.5 Consensus size: 158
14981789 AACTCTCTAT
* *
14981799 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCCTGT-GGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AG-GTGTCGGGTGCTCA
** * **
14981863 GCCGGTCGGAGCGATAGAATACGCAAGCTAGGGATCAGCCCAGTCCCCCACTACATGCTGTCGAT
64 GCCGACCGGAGAGGCAGAATACGCAAGCTAGGGATCAGCCCAGTCCCCCACTACATGCTGTCGAT
* * * * * *
14981928 CCTGCTACCTTAACCCTCGGTCTGATTTGA
129 CCCGCTACCATAACACTCAGTCCGATCTGA
* * * * * * * * * *
14981958 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAACAAGCGTCCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGT-CGGGTGCTCA
* * * * ** *
14982022 GCC-AGCCAGAGAGGCATAATGCGCAAGCTGGGGATC-GACCC-GATCCCCCTTTGA-GTGCTGT
64 GCCGA-CCGGAGAGGCAGAATACGCAAGCTAGGGATCAG-CCCAG-TCCCCCACT-ACATGCTGT
* *
14982083 CGATCCCGCTGCCATAACACTCAGTCCGA-CTGG
125 CGATCCCGCTACCATAACACTCAGTCCGATCTGA
* *
14982116 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGT-CGGGTGCTCAG
14982181 CCGACCGGAGAGGC
65 CCGACCGGAGAGGC
14982195 CAGTCAGAGA
Statistics
Matches: 182, Mismatches: 46, Indels: 19
0.74 0.19 0.08
Matches are distributed among these distances:
157 2 0.01
158 67 0.37
159 112 0.62
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGTGTCGGGTGCTCAGC
CGACCGGAGAGGCAGAATACGCAAGCTAGGGATCAGCCCAGTCCCCCACTACATGCTGTCGATCC
CGCTACCATAACACTCAGTCCGATCTGA
Found at i:14982502 original size:26 final size:26
Alignment explanation
Indices: 14982473--14982526 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14982463 GGTCCGATCT
14982473 TAGAC-TGAGAATGAACTCCGTATGCC
1 TAGACGTG-GAATGAACTCCGTATGCC
14982499 TAGACGTGGAATGAACTCCGTATGCC
1 TAGACGTGGAATGAACTCCGTATGCC
14982525 TA
1 TA
14982527 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACGTGGAATGAACTCCGTATGCC
Found at i:14982795 original size:159 final size:159
Alignment explanation
Indices: 14982506--14982998 Score: 570
Period size: 159 Copynumber: 3.1 Consensus size: 159
14982496 GCCTAGACGT
* * * *
14982506 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA-ACCAGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGA-CCGGA
* * * * *
14982570 GATGCAGAATGCGTAAGTCG-GGCACCGACCCGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACC
65 GAGGCAGAATGCGTAAGTCGAGG-ATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
*
14982634 ACAACCCTCGATCTGGTTCGATCTTAGACTG
129 ACAACCCTCGATCCGGTTCGATCTTAGACTG
* * * * *
14982665 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCGCTGAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAG
* * * * **
14982730 AGGCATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATGTTGCTGCCAC
66 AGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCAC
* * **
14982795 AACCCTCGGTCCGGTTGGGGCTTAGACAT-
131 AACCCTCGATCCGGTTCGATCTTAGAC-TG
* * *
14982824 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG-GATGTGCAGGCGCTCAGTCGACCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCGCTCAGTCGACCGGA
* * * *
14982888 GAGGAAGAATGCGTAAGCCTAGGATC-AGCCCGGTCCCCC-CTGCGTGCTG-CAGATCCTGCTGG
65 GAGGCAGAATGCGTAAGTCGAGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGC
* *
14982950 CACAACCCTCGATCCAGTTTGATCTTAGACTG
128 CACAACCCTCGATCCGGTTCGATCTTAGACTG
14982982 GGAATGAACT-CGTATGC
1 GGAATGAACTCCGTATGC
14982999 TTAGACTAGG
Statistics
Matches: 278, Mismatches: 49, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 8 0.03
158 54 0.19
159 211 0.76
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAG
AGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGATCCGGTTCGATCTTAGACTG
Found at i:14983013 original size:25 final size:26
Alignment explanation
Indices: 14982973--14983024 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
14982963 CCAGTTTGAT
14982973 CTTAGACTGGGAATGAAC-TCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14982998 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
14983024 C
1 C
14983025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14983074 original size:697 final size:692
Alignment explanation
Indices: 14981260--14983082 Score: 1848
Period size: 697 Copynumber: 2.6 Consensus size: 692
14981250 ACTCTGCATG
** * * *
14981260 CTTAGACAT-GGAATGAACTCCGTATGCCCGAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * ** *
14981324 TCGGCCGGAAAGGCAGAATGCGCAAGCAAGGATCGGCCCGATCCCCCTCTACGTGCTACCGGTCC
65 TCGACCGGAGAGGCATAATGCGCAAGCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGAT-C
* *
14981389 CCACTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCA
129 CCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCA
* * * * ** * * ** *
14981454 ACCCATGAAATGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAG-CTGGGGATC
193 ACCCACGAAA-CGGTGTGCGGGCGCTCAGCCGACCGAAGAGGAAGAATGCGTAAGCCT-AGGATC
* * * * * * * * *
14981518 GGCCTGGTCCCTCTTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGGTTCAATCTTAGA
256 AGCCCGGTCCCCCCTGCGTGCTGCAGATCCTGCTGGC-CAACCCTCGGTCCAGTT-TATCTTAGA
*
14981583 CTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTCAGTCAACCCATGAAA
319 CTGGGAATGAACT-CGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAA
** * * * * * ***
14981648 TGAAAGTGCGGGCACTCAGCCGATCAGAAAGGGAGAATGCGCAAGCCGGGGATCGACTTGGTCCC
383 TGAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCC
*
14981713 CGCCTGCGTGCTGCCAATCCTGCTACTGGTCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTA
448 CGCCTGCGTGCTGCCAATCCTACTACTGGTCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTA
*
14981778 GACTAGGAATGAACTCTCTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
513 GACTAGGAATGAACTCTCTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
** * * * *
14981843 AACGAGCCTGTGGGTGCTCAGCCGGTCGGAGCGATAGAATACGCAAGCTAGGGATCAGCCCAGTC
578 AACGAGCCTGCAGGCGCTCAACCAGTCGGA-CGATAGAATACGCAAGCTAGGGACCAGCCCAGTC
** * *
14981908 CCCCACTACATGCTGTCGATCCTGCTACCTTAACCCTCGGTCTGATTTGAT
642 CCCCACTACATGCTGTCGATCCTGCTACCACAACCCTCGATCTGATTCGAT
* * * * * *
14981959 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAACAAGCGTCCGGGCGTTGAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
* * * *
14982023 CCAGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTTTGA-GTGCTGTCGAT
66 CGA-CCGGAGAGGCATAATGCGCAAGC-GAGGATCGACCCGATCCCCCTCT-ACGTGCTGTCGAT
* * * ** *
14982087 CCCGCTGCCATAACACTCAGTCCGACT-GGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCC
128 CCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCC
* *
14982151 AACCCACGAAACAGGTGTGCGGGTGCTCAGCCGACCGGAGAGGCCAGTCAGAGAGGCATAATCCG
192 AACCCACGAAAC-GGTGTGCGGGCGCTCAGCCGACC-GA-A-G--AG---GA-A-G---AATGCG
* * *
14982216 TAAGCC-AGGGATCAGCCCGGTCCTCCTCTGCGTGCTACCA-ATCCTGCT-G-------TTGGTC
243 TAAGCCTA-GGATCAGCCCGGTCC-CCCCTGCGTGCT-GCAGATCCTGCTGGCCAACCCTCGGTC
* * * ** * *** * ** * *
14982271 CTG-CTACCACA-ACCCTTGGTCCG-GCT-G-GGGCTTAGACAAGGAATGAACTCTGTATGCCTA
305 CAGTTTATCTTAGA--CTGGGAATGAACTCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTA
* * * * * * * *
14982331 AGCCAACCAATGAAACGAGCGTACGGGCACCCAACCGGTCGGAGAGGCAAAATGCGCAAGCTAGG
368 AGTCAACCCATGAAATGAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGG
* * * * ** *
14982396 GATCGGCCCAGTCCCC-CCTGTGTGCTGTCGATCCTACTGTTGGTCCTGCTGCCGCAACCCTCGG
433 GATCGACCCAGTCCCCGCCTGCGTGCTGCCAATCCTACTACTGGTCCTACTGCCGCAACCCTCGG
*
14982460 TCTGGTCCGATCTTAGACT-GAGAATGAACTC-CGTATGCCTAGACGTGGAATGAACTCCGTATG
498 TCTGGTCCGATCTTAGACTAG-GAATGAACTCTC-TATGCCTAGACATGGAATGAACTCCGTATG
** * * *
14982523 CCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACCAGTCGGA-GATGCAGAATGCGTAAG
561 CCTAAGCCAACCCACAAAACGAGCCTGCAGGCGCTCAACCAGTCGGACGAT--AGAATACGCAAG
* * * *** * *
14982587 -TCGGGCACC-GACCCGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCACAACCCTCGATCTGG
624 CTAGGG-ACCAG-CCCAGTCCCCCACTACATGCTGTCGATCCTGCTACCACAACCCTCGATCTGA
14982650 TTCGAT
687 TTCGAT
* *
14982656 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
**
14982721 CGACCGGAGAGGCATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATGT
66 CGACCGGAGAGGCATAATGCGCAAG-CGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCC
*
14982786 TGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAA
* *
14982851 CCCACGAAACGGATGTGCAGGCGCTCAGTCGACCGAAGAGGAAGAATGCGTAAGCCTAGGATCAG
194 CCCACGAAACGG-TGTGCGGGCGCTCAGCCGACCGAAGAGGAAGAATGCGTAAGCCTAGGATCAG
*
14982916 CCCGGTCCCCCCTGCGTGCTGCAGATCCTGCTGGCACAACCCTCGATCCAGTTTGATCTTAGACT
258 CCCGGTCCCCCCTGCGTGCTGCAGATCCTGCTGGC-CAACCCTCGGTCCAGTTT-ATCTTAGACT
14982981 GGGAATGAACTCGTATGCTTAGACTAGGGATGAACT-TCGTATGCCTAAGTCAACCCATGAAATG
321 GGGAATGAACTCGTATGCTTAGACTAGGGATGAACTCT-GTATGCCTAAGTCAACCCATGAAATG
* * *
14983045 AGCGTACTGGCACTTC-GCCAACCGGAGAGGCAGAATGC
385 AGCGTACGGGCAC-TCAGCCGATCGGAGAGGCAGAATGC
14983083 ATAAGCCGTG
Statistics
Matches: 894, Mismatches: 175, Indels: 112
0.76 0.15 0.09
Matches are distributed among these distances:
683 2 0.00
684 19 0.02
685 27 0.03
686 1 0.00
688 1 0.00
689 1 0.00
690 2 0.00
693 8 0.01
694 6 0.01
695 9 0.01
696 12 0.01
697 400 0.45
698 222 0.25
699 93 0.10
700 29 0.03
701 7 0.01
702 5 0.01
703 8 0.01
706 1 0.00
707 1 0.00
708 1 0.00
711 20 0.02
712 18 0.02
713 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (692 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
CGACCGGAGAGGCATAATGCGCAAGCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACC
CACGAAACGGTGTGCGGGCGCTCAGCCGACCGAAGAGGAAGAATGCGTAAGCCTAGGATCAGCCC
GGTCCCCCCTGCGTGCTGCAGATCCTGCTGGCCAACCCTCGGTCCAGTTTATCTTAGACTGGGAA
TGAACTCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTA
CGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCGCCTGCG
TGCTGCCAATCCTACTACTGGTCCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGA
ATGAACTCTCTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCC
TGCAGGCGCTCAACCAGTCGGACGATAGAATACGCAAGCTAGGGACCAGCCCAGTCCCCCACTAC
ATGCTGTCGATCCTGCTACCACAACCCTCGATCTGATTCGAT
Found at i:14983151 original size:78 final size:78
Alignment explanation
Indices: 14983016--14983161 Score: 188
Period size: 78 Copynumber: 1.9 Consensus size: 78
14983006 AGGGATGAAC
* * *
14983016 TTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACTGGCACTTCGCCAACCGGAGAGGCAGAAT
1 TTCGTATGCCTAAGTCAACCCATGAAATGAGCGCACGGGCACTTCGCCAACCAGAGAGGCAGAAT
14983081 GCATAAGCCGTGG
66 GCATAAGCCGTGG
* ** * *
14983094 TTCGTATGCCTAAG-CAAACCCATGAAATGAGTGCACGGGTGC-TCAGCCAGCCAGAGAGGTAGA
1 TTCGTATGCCTAAGTC-AACCCATGAAATGAGCGCACGGGCACTTC-GCCAACCAGAGAGGCAGA
14983157 ATGCA
64 ATGCA
14983162 CAGGCCAGGG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
77 3 0.05
78 55 0.95
ACGTcount: A:0.29, C:0.25, G:0.27, T:0.18
Consensus pattern (78 bp):
TTCGTATGCCTAAGTCAACCCATGAAATGAGCGCACGGGCACTTCGCCAACCAGAGAGGCAGAAT
GCATAAGCCGTGG
Found at i:14984205 original size:26 final size:26
Alignment explanation
Indices: 14984167--14984219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14984157 CCTGTGCGAT
14984167 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14984193 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14984219 C
1 C
14984220 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14985202 original size:158 final size:158
Alignment explanation
Indices: 14984902--14985195 Score: 434
Period size: 158 Copynumber: 1.9 Consensus size: 158
14984892 AACTCCGTAT
* * * *
14984902 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCCCAG
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
* * * *
14984967 CCAGTCGGAGAGGCAGAATGCCAAGTCGGGGATCGGCCCGATCCCCCTTTGTGTGCTGTCGGTCC
66 CCAGTCGGAGAGGCAGAATGCCAAGGCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
14985032 CGCTGCCACAACCTTCGATCCGGCTGGG
131 CGCTGCCACAACCTTCGATCCGGCTGGG
*
14985060 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCCCA
14985124 GCC-GTCCGGAGAGGCAGAATGCGCAAGGCGGGGATCGGCCC-AGTCCCCC-CTGCGTGCTGTCG
65 GCCAGT-CGGAGAGGCAGAATGC-CAAGGCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTGTCG
*
14985186 ATCCTGCTGC
127 ATCCCGCTGC
14985196 TGCAACCCTC
Statistics
Matches: 122, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
157 3 0.02
158 96 0.79
159 23 0.19
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
CCAGTCGGAGAGGCAGAATGCCAAGGCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
CGCTGCCACAACCTTCGATCCGGCTGGG
Found at i:14985245 original size:158 final size:157
Alignment explanation
Indices: 14984902--14985245 Score: 405
Period size: 158 Copynumber: 2.2 Consensus size: 157
14984892 AACTCCGTAT
* *
14984902 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
* * * *
14984967 CCAGTCGGAGAGGCAGAATGCCAAGTCGGGGATCGGCCCGATCCCCCTTTGTGTGCTGTCGGTCC
66 CCAGTCGGAGAGGCAGAATGCCAAGGCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
* * *
14985032 CGCTGCCACAACCTTCGATCCGGCTGGG
131 CGCTGCCACAACCCTCGATCC-GCTCGA
* * *
14985060 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCCCA
14985124 GCC-GTCCGGAGAGGCAGAATGCGCAAGGCGGGGATCGGCCC-AGTCCCCC-CTGCGTGCTGTCG
65 GCCAGT-CGGAGAGGCAGAATGC-CAAGGCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTGTCG
* **
14985186 ATCCTGCTGCTGCAACCCTC-AGTCC-CATCCGA
127 ATCCCGCTGCCACAACCCTCGA-TCCGC-T-CGA
* *
14985218 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14985246 TTAGACCGGG
Statistics
Matches: 159, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
156 1 0.01
157 6 0.04
158 129 0.81
159 23 0.14
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
CCAGTCGGAGAGGCAGAATGCCAAGGCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGATCCGCTCGA
Found at i:14985260 original size:26 final size:26
Alignment explanation
Indices: 14985219--14985271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14985209 CCCATCCGAT
*
14985219 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCTGTATG
*
14985245 CTTAGACCGGGGATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCTGTATG
14985271 C
1 C
14985272 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCTGTATG
Found at i:14986262 original size:158 final size:158
Alignment explanation
Indices: 14985941--14986284 Score: 354
Period size: 158 Copynumber: 2.2 Consensus size: 158
14985931 AACTCCGTAT
* *
14985941 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCACTCAG
* * * * *
14986006 CCGGCCGGAGAGGCAGAATGCGCAAACCGAGGATCAGCCCGGTCCCCCTCTATGTACTGTCGGTC
66 CCGGCCGGAGAGGCAGAATGCACAAACCGAGGATCAGCCCGGTCCCCCTATACGTACTGCCGATC
** * *
14986071 CCGTTACCACAACCCTTGATCCCCTGGG
131 CCACTACCACAACCCTCGATCCCCTGGA
* * * **
14986099 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCACTCAG
* * *** * * * * *
14986164 TCGGTCGGAGAGGCAGAATGCACATGGCGGGGAT-TGACCCGGTCCCCC-ATGCGTGCTGCCTAT
66 CCGGCCGGAGAGGCAGAATGCACAAACCGAGGATCAG-CCCGGTCCCCCTATACGTACTGCCGAT
* * *
14986227 CCTACTACCGCAACCCTCGATCCGATCT-GA
130 CCCACTACCACAACCCTCGATCC--CCTGGA
*
14986257 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
14986285 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 28 0.18
158 122 0.80
159 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCACTCAG
CCGGCCGGAGAGGCAGAATGCACAAACCGAGGATCAGCCCGGTCCCCCTATACGTACTGCCGATC
CCACTACCACAACCCTCGATCCCCTGGA
Found at i:14986294 original size:26 final size:26
Alignment explanation
Indices: 14986258--14986310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14986248 CCGATCTGAT
14986258 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14986284 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14986310 C
1 C
14986311 CTAACTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14986996 original size:26 final size:26
Alignment explanation
Indices: 14986958--14987010 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14986948 GGCTCAAACT
14986958 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14986984 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14987010 C
1 C
14987011 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14987416 original size:184 final size:182
Alignment explanation
Indices: 14987105--14987477 Score: 489
Period size: 184 Copynumber: 2.0 Consensus size: 182
14987095 TCCGGCTGGG
* * * * *
14987105 GCTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * * *
14987170 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
14987235 TACTGCCGCAACCCTCGGT-CAGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TAC-GCCGCAACCCTCAGTCCA-GTC-GATCTTAGACTGAGAATGAACTCCGTAT
* * *
14987289 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGATGCTCAG
1 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * *
14987354 CC-AGCCGAAGAGGCAGAATGCGTAAGTCGGGGACCGACCCGGTCCCCCCTGCGTGTTGTCGATC
66 CCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATC
* * *
14987418 CTGCGTCGCAACCCTCAGTCCATTCGATCTTAGACTGAGAATGAACTCCGTAT
130 CTACGCCGCAACCCTCAGTCCAGTCGATCTTAGACTGAGAATGAACTCCGTAT
14987471 GCCTTAG
1 G-CTTAG
14987478 TCAACTCACG
Statistics
Matches: 164, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
182 28 0.17
183 21 0.13
184 115 0.70
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (182 bp):
GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TACGCCGCAACCCTCAGTCCAGTCGATCTTAGACTGAGAATGAACTCCGTAT
Found at i:14987799 original size:26 final size:26
Alignment explanation
Indices: 14987763--14987815 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14987753 CCAGTTCGAT
14987763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14987789 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14987815 C
1 C
14987816 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14988919 original size:512 final size:513
Alignment explanation
Indices: 14987938--14989297 Score: 1291
Period size: 512 Copynumber: 2.7 Consensus size: 513
14987928 ATCCCACTGC
* * * *
14987938 CGGTCCTACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCCACTACCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * *** * * * *
14988003 AGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTAGCCAGATAGGCAGAATGTGCATGCCAGA
66 AGCCAACCCACGAAACGAGCATACGAACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGA
* * * * * * *
14988068 GATCGAACCGGTCCCCCCTGCGTGCTGCCGATCCTGTTGCTATTCCTGCTGCCGTAACCCTCGGT
131 GATCGAACCGGTCCCCCCTACGTGCTACCGATCCTGCTACTAGTCCTACTGCCGCAACCCTCGGT
* * *
14988133 CCAGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCT
196 CCAGTCCGATCTTAGAATGGCAATGAACTCCATATGCTTAGAAATGGAATGAACTCTGTATGCCT
* * *
14988198 AAGCCAACCAACGAAACGAGTGTGTGGGCACTCAACCGATCGAAGAGGCAGAATGCGTAAGCCGA
261 AAGCCAACCAACGAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGA
* * * * * ** * *
14988263 GGATTAGCCCGGTCCCCTCTGCGTGCTATCGATCCTGCTACTGCAACCCGTGATCTGGTCTGATC
326 GGATGAGCCCGGTCCCCCCTACATGCCATCGATCCTGCTACCACAACCCGTCATCCGGTCTGATC
* * * *
14988328 TTAGACTGCGAATGAACTCAGTATGCCTAAGTCAACCCACTAAACGAGCATTCGAGCGTTGAGCC
391 TTAGACTGAGAATGAACTCAGTATGCCAAAGTCAACCCACTAAAAGAGCATTCGAGCGCTGAGCC
* * * *** *
14988393 GGCCGTAAAGGCATAATGCGTAAGCCGGGGATCAGCTCAG-TCCCCCTCTGCGTGCTGT
456 AGCCGGAAAGGCATAATGCGTAACCCAAAGATCAGC-CAGATCCCCCTCTGCGTGCTAT
* * *
14988451 CGGTCCCACTACCACAACCCTTGGTTCGGTTAGGGCTTAGACATGGAATGAA-TGCCCTACGCCT
1 CGGTCCCACTACCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAATGAACT-CCCTATGCCT
* *
14988515 AAGCCAACCCACGAAACGGGCATACGAACGCTCATCCAGCCAGAGAGGCAGAATGCGCAAGCCAG
65 AAGCCAACCCACGAAACGAGCATACGAACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAG
* * * **
14988580 GGATCG-ACTCGGT-CCCCCTACGTGCTATCGATCCTGCTACTGGTCCTACTGTTGCAACCCTCG
130 AGATCGAAC-CGGTCCCCCCTACGTGCTACCGATCCTGCTACTAGTCCTACTGCCGCAACCCTCG
* ** *
14988643 GTCCGGTCCGATCTTAGAATGGCAATGAACTCTGTATGCTTAGAAATGTAATGAACTCTGTATGC
194 GTCCAGTCCGATCTTAGAATGGCAATGAACTCCATATGCTTAGAAATGGAATGAACTCTGTATGC
* * * ** * *
14988708 CTAAGCCAACTC-ATGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGTAGAATGCGCAATG
259 CTAAGCCAAC-CAACGAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCGCAA-G
* * *
14988772 -CGGGGAATGA-CCCGGTCCCCCCTACATGCCGTCGATCCTGCTGCCACAACCC-TCAGTCCGGT
322 CCGAGG-ATGAGCCCGGTCCCCCCTACATGCCATCGATCCTGCTACCACAACCCGTCA-TCCGGT
* ** * * *
14988834 -TCGATCTTAGACTGAGAATGAACTCTGTATGCCAAAGTCAATGCA-TGAAAAGAGCGTTTGGGC
385 CT-GATCTTAGACTGAGAATGAACTCAGTATGCCAAAGTCAACCCACT-AAAAGAGCATTCGAGC
* ** *
14988897 GCTGAGCCAGCCGGAGAGGCATAATGCGTAACCCAAAGATTGGCCCGATCCCCCTCTGCGTGCTA
448 GCTGAGCCAGCCGGAAAGGCATAATGCGTAACCCAAAGATCAGCCAGATCCCCCTCTGCGTGCTA
14988962 T
513 T
* * * *
14988963 CGATCCCGCTGCCACAACCC-TCGTTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 CGGTCCCACTACCACAACCCTTGGTTC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * ** * * * * * * *
14989027 AAGCCAACCCACGAAA-TAGGCATGC-AGGTGCTCAGCCGGTCGGAAAAGCAGATTGTGCAAGCC
65 AAGCCAACCCACGAAACGA-GCATACGA-ACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCC
* * * *
14989090 -GAGGATCG-GCCCGTCCCCCCTGCGTGCTGCCGATCCTG---CT-G-CC-A------CAACCCT
128 AGA-GATCGAACCGGTCCCCCCTACGTGCTACCGATCCTGCTACTAGTCCTACTGCCGCAACCCT
** * * * * * * * *
14989141 CAATCCAATCCAATCTTAGACTGGGAATGAAGTCCATATGCTTA-AACTGGGGATGAACTCCGTA
192 CGGTCCAGTCCGATCTTAGAATGGCAATGAACTCCATATGCTTAGAAAT-GGAATGAACTCTGTA
* * * * * * * * *
14989205 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTATATTGCGCAA
256 TGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCGCAA
* * * *
14989270 GCCGGGGATTAGCACGGTTCCCCTCTAC
321 GCCGAGGATGAGCCCGG-TCCCCCCTAC
14989298 GTGCTGTCGA
Statistics
Matches: 697, Mismatches: 130, Indels: 52
0.79 0.15 0.06
Matches are distributed among these distances:
499 8 0.01
500 118 0.17
501 9 0.01
506 1 0.00
507 2 0.00
508 1 0.00
509 2 0.00
511 16 0.02
512 416 0.60
513 124 0.18
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (513 bp):
CGGTCCCACTACCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGAGCATACGAACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGA
GATCGAACCGGTCCCCCCTACGTGCTACCGATCCTGCTACTAGTCCTACTGCCGCAACCCTCGGT
CCAGTCCGATCTTAGAATGGCAATGAACTCCATATGCTTAGAAATGGAATGAACTCTGTATGCCT
AAGCCAACCAACGAAACGAGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGA
GGATGAGCCCGGTCCCCCCTACATGCCATCGATCCTGCTACCACAACCCGTCATCCGGTCTGATC
TTAGACTGAGAATGAACTCAGTATGCCAAAGTCAACCCACTAAAAGAGCATTCGAGCGCTGAGCC
AGCCGGAAAGGCATAATGCGTAACCCAAAGATCAGCCAGATCCCCCTCTGCGTGCTAT
Found at i:14989184 original size:26 final size:26
Alignment explanation
Indices: 14989155--14989207 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14989145 CCAATCCAAT
* *
14989155 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
14989181 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
14989207 C
1 C
14989208 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14990010 original size:12 final size:12
Alignment explanation
Indices: 14989993--14990023 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14989983 GTGCTGTCGA
14989993 TCTTACTGCTGG
1 TCTTACTGCTGG
14990005 TCTTACTGCTGG
1 TCTTACTGCTGG
*
14990017 TCCTACT
1 TCTTACT
14990024 ACCATAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.29, G:0.19, T:0.42
Consensus pattern (12 bp):
TCTTACTGCTGG
Found at i:14990544 original size:26 final size:26
Alignment explanation
Indices: 14990515--14990567 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14990505 CCAGTTCGAT
*
14990515 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
14990541 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14990567 C
1 C
14990568 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14990740 original size:26 final size:26
Alignment explanation
Indices: 14990711--14990763 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14990701 CCGATCCGAT
14990711 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14990737 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14990763 C
1 C
14990764 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14990847 original size:196 final size:195
Alignment explanation
Indices: 14990511--14990865 Score: 475
Period size: 196 Copynumber: 1.8 Consensus size: 195
14990501 CGATCCAGTT
* * * * *
14990511 CGATCTTAGACTTGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14990576 ACCGACGAAACCAACGTGCCAGAGCTCAGCCGGCCAGAGAGGCAGAATGGGCAAGCTAGGGATTG
66 ACCCACGAAACCAACGTGCCAGAGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGAGTG
*
14990641 GCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTATCGGTCCTGCTGCCACAACCCTCAGTCCGAT
131 GCCTGGT-CCCCCTACGTGCTGTCGATCCTACTATCGGTCCTGCTGCCACAACCCTCAGTCCGAT
14990706 C
195 C
14990707 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCC
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCC
* * * * ** * *
14990771 AACCCATGGAACGAGCGTGCGGGCA-CTCAGCCGGTC-GAAGAGGTAGAATGCGCAAGCCAGGGA
65 AACCCACGAAACCAACGTGCCAG-AGCTCAGCCGGCCAG-AGAGGCAGAATGCGCAAGCCAGGGA
14990834 GTGG-CTCGGTCCCCCTACGTGCTGTCGATCCT
128 GTGGCCT-GGTCCCCCTACGTGCTGTCGATCCT
14990866 GTTGCTGCAA
Statistics
Matches: 137, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
195 24 0.18
196 111 0.81
197 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (195 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACCAACGTGCCAGAGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGAGTG
GCCTGGTCCCCCTACGTGCTGTCGATCCTACTATCGGTCCTGCTGCCACAACCCTCAGTCCGATC
Found at i:14991839 original size:689 final size:687
Alignment explanation
Indices: 14990471--14991974 Score: 1770
Period size: 689 Copynumber: 2.2 Consensus size: 687
14990461 CAAGCGCTCA
* * *
14990471 GCATGCTACCGATCCTGCTGCCGTAACCCTCGATCCAGTTCGATCTTAGACTT-GGAATGAACTT
1 GCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCA-TTAGATCTTAGA-TTGGGAATGAACTT
* *
14990535 CGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCGACGAAACCAACGTGCCAGAG
64 CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG--A--AA--TG--AGAG
* * * * * **
14990600 CTCAGCCGGCCAGAGAGGCAGAATGGGCAAGCTAGGGATTGGCCTGGTCCCCCCTGCGTGCTGTC
121 CTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGCGTGCACTC
*
14990665 GATCCTACTATCGGTCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACT
186 GATCCTACTATCGGTCCTGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACT
* * * * *
14990730 CCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCGGGC
251 CCGTATGCTTAGACATCGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC
* * ** * * * *
14990795 ACTCAGCCGGTCGAAGAGGTAGAATGCGCAAGCCAGGGAGTGGCTCGGTCCCCCTACGTGCTGTC
316 ACTCAACCGATCGAAGAGACAGAATGCGCAAGCCAGGGAGTGGCCCGATCCCCCTACATGCTATC
* * * * * * * *
14990860 GATCCTGTTGCTGCAACCTTTGGTTCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
381 GATCCTGCTGCTGCAACCCTTAGTCCGGTCTCATCTTAGACTGGGAATGAACTCCATATGCCAAA
* * * *
14990925 GTTAACCCACAAATAAACGTTCGGGCGTTGAGCCAGCCGGAGAGGCATAATACGTAAGTCAAGGA
446 GTCAACCCAAAAATAAACGTTCGGGCGTTGAGCCAGCCGGAGAGGCATAATACGCAAGGCAAGGA
* * * * *
14990990 TCGGTTCAATCCCCCACTGAGTGCTGTCATTCCCGCTGCCACAACCCTTAGTTTGGCTGGGGCTT
511 TCGGCTCAATCCCCCACTGAGTGCTGTCAGTCCCGCTGCCACAACCCTGAGTCTGACTGGGGCTT
* *
14991055 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGCCGA
576 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGAGTGCTCAACCGA
* * *
14991120 CTAGAGAGGCAGAATGCGTAAGCTGAGGATC-GATCCGGT-CCCCTCT
641 CTAGAGAGGCAGAATGCGCAAGCTGAGGATCGGCT-CGGTCCCCCCCT
* * * * * *
14991166 GCGTGCTGCCGATCCTACTGTCGCAACCCTCGGTCCATTAGATCTTAGGTTGGGAAT-ATACTCC
1 GCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCATTAGATCTTAGATTGGGAATGA-ACTTC
* * *
14991230 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTG-TACGGGCG
65 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGCT-CAGCCG
* * * *
14991294 GTC-GAAGATGCAGAATGCGCAAGCCGGGGATTGACCCGATCCCTCCTTGCGTGCACTCGATCCT
129 GCCAG-AGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCC-CCCTGCGTGCACTCGATCCT
* * ** ** * *
14991358 GCT-GCTGGTCCTGCTACCGTAACCCTTGGTCCGCTTCGATCTTAGACTGGGAATGAACTCCGTA
192 ACTATC-GGTCCTGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
14991422 TGCTTAGACATCGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCACTCA
256 TGCTTAGACATCGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * *
14991487 ACCGATCGAAGAGACAGAATGCGTAAGCCGGGGA-TCGGCCCGATCCCCCCTGCATGCTATCGAT
321 ACCGATCGAAGAGACAGAATGCGCAAGCCAGGGAGT-GGCCCGAT-CCCCCTACATGCTATCGAT
* * *
14991551 CTTGCTG-TCGCAACCCTTAGTCCGGTCTCATCTTAGACTGGGAATGAACTCCATTTGTCAAAGT
384 CCTGCTGCT-GCAACCCTTAGTCCGGTCTCATCTTAGACTGGGAATGAACTCCATATGCCAAAGT
* * * * * * *
14991615 CAACCCATAAAATGAGCGTTCGGGTGTTGGGCCGGTCGGAGAGGCATAATACGCAAGGCGAGGAT
448 CAACCCA-AAAATAAACGTTCGGGCGTTGAGCCAGCCGGAGAGGCATAATACGCAAGGCAAGGAT
* * ** * * *
14991680 TGGCTCGATCCCCCTTTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGA-TCTGACTGGGGCTT
512 CGGCTCAATCCCCCACTGAGTGCTGTCAGTCCCGCTGCCACAACCCT-GAGTCTGACTGGGGCTT
* * *
14991744 AGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACGGGCGTGCGAGTGCTCAACCGG
576 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGAGTGCTCAACCGA
*
14991809 CTAGAGAGGTAGAATGCGCAAG-TCGAGGATCGGCTCGGTCCCCCCCT
641 CTAGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCTCGGTCCCCCCCT
* ** ** * * *
14991856 GCAAGCTGTTGATCCTGCTGCCGTAACCCTTAGTCTGATTTGATCTTAGACTGGGAATGAACTTC
1 GCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTC-CATTAGATCTTAGATTGGGAATGAACTTC
* *
14991921 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTATCCCACGAAATGAG
65 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
14991975 CATGCGAGCA
Statistics
Matches: 681, Mismatches: 112, Indels: 36
0.82 0.14 0.04
Matches are distributed among these distances:
685 2 0.00
686 42 0.06
687 162 0.24
688 76 0.11
689 188 0.28
690 37 0.05
691 74 0.11
692 2 0.00
693 3 0.00
694 64 0.09
695 31 0.05
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (687 bp):
GCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCATTAGATCTTAGATTGGGAATGAACTTCG
TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGCTCAGCCGGC
CAGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGCGTGCACTCGATCCTACTA
TCGGTCCTGCTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACATCGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCGA
TCGAAGAGACAGAATGCGCAAGCCAGGGAGTGGCCCGATCCCCCTACATGCTATCGATCCTGCTG
CTGCAACCCTTAGTCCGGTCTCATCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCAA
AAATAAACGTTCGGGCGTTGAGCCAGCCGGAGAGGCATAATACGCAAGGCAAGGATCGGCTCAAT
CCCCCACTGAGTGCTGTCAGTCCCGCTGCCACAACCCTGAGTCTGACTGGGGCTTAGACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGAGTGCTCAACCGACTAGAGAGGC
AGAATGCGCAAGCTGAGGATCGGCTCGGTCCCCCCCT
Found at i:14991936 original size:26 final size:26
Alignment explanation
Indices: 14991900--14991952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14991890 CTGATTTGAT
*
14991900 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14991926 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14991952 C
1 C
14991953 CTAAGTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14992318 original size:26 final size:26
Alignment explanation
Indices: 14992280--14992332 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14992270 CCGATCTGAT
14992280 CTTAGACTGGGAATGAACTTC-GTATG
1 CTTAGACTGGGAATGAAC-TCAGTATG
*
14992306 CTTAGACAT-GGAATTAACTCAGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
14992332 C
1 C
14992333 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:14992701 original size:159 final size:158
Alignment explanation
Indices: 14992305--14992758 Score: 441
Period size: 159 Copynumber: 2.9 Consensus size: 158
14992295 AACTTCGTAT
* * * * ** * *
14992305 GCTTAGACATGGAATTAACTCAGTATGCCTAAGCCAACCCATGAAACAAGCGGGCGGGCACTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * * * *
14992370 CCGACTAGAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCTCCTGTGTGCTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCC
*
14992435 TGCTGTCACAACCCTCAGTCCGATCCGA
131 TGCTGCCACAACCCTCAGTCCGATCCGA
* * * * * * *
14992463 TCTTAGAC-TGGGACTAAAATCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGGTGCTTA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
14992527 GCCAATCGG-GAAGGCATAATGCACAAGCTGGGGATCGACCCAATCCCCCTCTGTGTGCTATCAG
65 GCCGACCGGAG-AGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCC-CTGTGTGCTATC-G
* * * *
14992591 A-CCTGCTGCCACAACCCTCGGTCCG-GCTGGG
127 ATCCTGCTGCCACAACCCTCAGTCCGATC-CGA
* *
14992622 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * ** *
14992687 TCGACCGGAGAGGCAGAAT-CTGCAAGCCGGGGATCGACTCGATCCCCTCTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGC-ACAAGCTGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATC
*
14992751 TTGCTGCC
130 CTGCTGCC
14992759 GTAACCTTCG
Statistics
Matches: 234, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 104 0.44
159 122 0.52
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCC
TGCTGCCACAACCCTCAGTCCGATCCGA
Found at i:14993018 original size:26 final size:26
Alignment explanation
Indices: 14992989--14993044 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
14992979 TCGGTCTGAT
14992989 CTTAGAC-TGGGAATGAACT-TCGTATG
1 CTTAGACAT-GGAATGAACTCT-GTATG
14993015 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
14993041 CTTA
1 CTTA
14993045 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:14993275 original size:709 final size:710
Alignment explanation
Indices: 14992182--14993567 Score: 1759
Period size: 709 Copynumber: 2.0 Consensus size: 710
14992172 AACCGGTAGA
* * * ** * * *
14992182 AGAGGCAGAATGCCTAAGCTAGGGATCGGTTCGGTCCCCCCTGCATGCTGTCGATCTTGCTACTG
1 AGAGGCAGAATGCATAAGCCAGGGATCAGCCCGGTACCCCCTGCATGCTATCGATCCTGCTACTG
* * * *
14992247 GTCTTGTTACTGGAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
66 GTCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
* * *
14992312 CATGGAATTAACTCAGTATGCCTAAGCCAACCCATGAAACAAGCGGGCGGGCACTCAACCGACTA
131 CATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACAAGCGGGCAGGCACTCAACCGACTA
* * * ** * * *
14992377 GAGAGGTAGAATGCACAAGCTGGGGATCGGCCCGATCCCTCCTGTGTGCTGTCGATCTTGCTGTC
196 GAGAGGTAGAATGCACAAGCTGGGGACCGACCCGATCCCGCCTACGTACTGTCGATCCTGCTGCC
*
14992442 ACAACCCTCAGTCCGATCCGATCTTAGACTGGGACTAAAATCCGTATGCCTAAGTCAACACACGA
261 ACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATAAAATCCGTATGCCTAAGTCAACACACGA
* * * * *
14992507 AACGAGCGTACGGGTGCTTAGCCAATCGGGAAGGCATAATGCACAAGCTGGGGATCGACCCAATC
326 AACAAGCATACGGGCGCTTAGCCAATCGAGAAGGCATAATGCACAAGCTGGGAATCGACCCAATC
* * * *
14992572 CCCCTCTGTGTGCTATCAGAC-CTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAA
391 CCCCTCTGCGTGCTATCAGACTCAG-TGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGCAA
* **
14992636 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGC
455 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCCTACGGGCGCTCAACCGACCGGAGAGGC
* * * * *
14992701 AGAAT-CTGCAAGCCGGGGATC-GACTCGATCCCCTCTACGTGCTGTCGATCTTGCTGCCGTAA-
520 AGAATGC-GCAAGCCGGGGATCAG-CTCGATCCCCCCTACGTACTGTCGATCCTGCTACCGCAAC
**
14992763 CCTTCGGTCTATTTC-GATCTTAGACTAGGAATGAACTCCCTATAG-TTAGACTGGGGATGAACT
583 CCTT-GGT-TAGGTCTGATCTTAGACTAGGAATGAACTCCCTAT-GCTTAGACTGGGGATGAACT
14992826 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAATCGATCTGAGAGCCCGACTG
645 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAATCGATCTGAGAGCCCGACTG
14992891 G
710 G
** * *
14992892 AGAGGCAGAATGCATAAGCCAGGGATCAGCCCGG-ACCCCCTGTGTGCTATCGATCCTGTTGCTG
1 AGAGGCAGAATGCATAAGCCAGGGATCAGCCCGGTACCCCCTGCATGCTATCGATCCTGCTACTG
* * *
14992956 GTCCTGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
66 GTCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
* * * * * * *
14993021 CATGGAATGAACTCTGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCG-GTC
131 CATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACAAGCGGGCAGGCACTCAACCGACT-
* * *
14993085 GGAGAGGTAGAATGCACAAGCTGGGGACCGACTCGATCCCGCCTACGTACTGTTGATCCTGCTGC
195 AGAGAGGTAGAATGCACAAGCTGGGGACCGACCCGATCCCGCCTACGTACTGTCGATCCTGCTGC
* * * * * * *
14993150 CACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
260 CACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATAAAATCCGTATGCCTAAGTCAACACACG
* * * * * *
14993215 AAATAAGCATCCGGGCGC-TGGGCAGGTCGA-AGAGGCATAATGCGCAAG-TCGGGAATCGACCC
325 AAACAAGCATACGGGCGCTTAGCCA-ATCGAGA-AGGCATAATGCACAAGCT-GGGAATCGACCC
* * * * * * *
14993277 GATCCCCCTCTGCGTGCTGTCGGTCTCAGTGCCACAATCCTCGATCTGGTTGGGGCTTAGACATG
387 AATCCCCCTCTGCGTGCTATCAGACTCAGTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
* * * *
14993342 CAATGAACTCCCTATGCCTAATCCAACCCACGAAATGGGCCTGCGGGCGCTCAACCGACCGGAGA
452 CAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCCTACGGGCGCTCAACCGACCGGAGA
* * * * *
14993407 GGTAGAATGCGCAAGTCGGGGATCAGTTCGGTCCCCCCTGCGTACTGTCGATCCTGCTACCGCAA
517 GGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCCCTACGTACTGTCGATCCTGCTACCGCAA
* * ** *
14993472 CCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCT
582 CCCTTGGTTAGGTCTGATCTTAGACTAGGAATGAACTCCCTATGCTTAGACTGGGGATGAACTCC
14993537 GTATGCCTAAGTCAACCCATGAAATGAGCGT
647 GTATGCCTAAGTCAACCCATGAAATGAGCGT
14993568 ACGGACGCTT
Statistics
Matches: 572, Mismatches: 94, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
708 11 0.02
709 524 0.92
710 37 0.06
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (710 bp):
AGAGGCAGAATGCATAAGCCAGGGATCAGCCCGGTACCCCCTGCATGCTATCGATCCTGCTACTG
GTCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
CATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACAAGCGGGCAGGCACTCAACCGACTA
GAGAGGTAGAATGCACAAGCTGGGGACCGACCCGATCCCGCCTACGTACTGTCGATCCTGCTGCC
ACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATAAAATCCGTATGCCTAAGTCAACACACGA
AACAAGCATACGGGCGCTTAGCCAATCGAGAAGGCATAATGCACAAGCTGGGAATCGACCCAATC
CCCCTCTGCGTGCTATCAGACTCAGTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGCAAT
GAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCCTACGGGCGCTCAACCGACCGGAGAGGCA
GAATGCGCAAGCCGGGGATCAGCTCGATCCCCCCTACGTACTGTCGATCCTGCTACCGCAACCCT
TGGTTAGGTCTGATCTTAGACTAGGAATGAACTCCCTATGCTTAGACTGGGGATGAACTCCGTAT
GCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAATCGATCTGAGAGCCCGACTGG
Found at i:14993442 original size:159 final size:158
Alignment explanation
Indices: 14993014--14993516 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 158
14993004 AACTTCGTAT
* * * * * *
14993014 GCTTAGACATGGAATGAACTCTGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * * * *
14993079 CCGGTCGGAGAGGTAGAATGCACAAG-CTGGGGACCGACTCGATCCCGCCTACGTACTGTTGATC
66 CCGGTCGGAGAGGTAGAATGCGCAAGTC-GGGGATCGACTCGATCCCCCCTGCGTACTGTCGATC
* *
14993143 CTGCTGCCACAACCCTCGGTCTGGTCTGA
130 CAGCTGCCACAACCCTCGATCTGGTCTGA
* * * *
14993172 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAATAAGCATCCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAA-TCCAACCCACGAAATGAGCATGCGGGCGCTC
* * * * * * * * *
14993235 GGCAGGTCGAAGAGGCATAATGCGCAAGTCGGGAATCGACCCGATCCCCCTCTGCGTGCTGTCGG
64 AGCCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACTCGATCCCCC-CTGCGTACTGTCGA
* *
14993300 TCTCAG-TGCCACAATCCTCGATCTGGT-TGGG
128 TC-CAGCTGCCACAACCCTCGATCTGGTCT-GA
* * * * *
14993331 GCTTAGACATGCAATGAACTCCCTATGCCTAATCCAACCCACGAAATGGGCCTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAATGAGCATGCGGGCGCTCAG
** * *
14993396 CCGACCGGAGAGGTAGAATGCGCAAGTCGGGGATC-AGTTCGGTCCCCCCTGCGTACTGTCGATC
66 CCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGA-CTCGATCCCCCCTGCGTACTGTCGATC
* * * * *
14993460 CTGCTACCGCAACCCTTGGT-TCGGTCTGA
130 CAGCTGCCACAACCCTCGATCT-GGTCTGA
* *
14993489 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
14993517 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 61, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 142 0.52
159 121 0.45
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAATGAGCATGCGGGCGCTCAG
CCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTACTGTCGATCC
AGCTGCCACAACCCTCGATCTGGTCTGA
Found at i:14993519 original size:26 final size:26
Alignment explanation
Indices: 14993490--14993542 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14993480 TCGGTCTGAT
14993490 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14993516 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14993542 C
1 C
14993543 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14994207 original size:26 final size:26
Alignment explanation
Indices: 14994178--14994230 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14994168 GGCTCCAACT
14994178 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
14994204 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
14994230 C
1 C
14994231 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:14995339 original size:158 final size:158
Alignment explanation
Indices: 14994975--14995314 Score: 385
Period size: 158 Copynumber: 2.2 Consensus size: 158
14994965 ATTGGCCCGA
* * * * * * * *** *
14994975 TCCCACTCTGCGTGCTACCGGTCTCATTGCCACAACCCGCGGTCCTACTAAGGCATAGACATGGA
1 TCCCCCTCTGCGTGCTACCGATCCCACTACCACAACCCTCAGTCCGGTTAGGGCATAGACATGGA
* * * *
14995040 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAGCGGTCGGAGAGGC
66 ATGAACTCCTTATGCTTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCGGTCGGAGAGGC
* * *
14995105 AAAATGCGCAAGCCGGGGATCGGTCCGG
131 AAAATGCGCAAGCCGGAGATCGGCCCAG
* * * * *
14995133 TCCCCCTTTGTGTGCTGCCGGTCCCACTACCACAACCCTCAGTCCGGTTGGGGCATAGACATGGA
1 TCCCCCTCTGCGTGCTACCGATCCCACTACCACAACCCTCAGTCCGGTTAGGGCATAGACATGGA
** ** *
14995198 ATGAACTCCTTATGCTTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAGTCGGTTGGAGAGG
66 ATGAACTCCTTATGCTTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAG-CGGTCGGAGAGG
* *
14995263 CAGAATGCGTAAGCCGGAGATCGGCCCAG
130 CAAAATGCGCAAGCCGGAGATCGGCCCAG
*
14995292 TCCCCC-CTGCGTGCTATCGATCC
1 TCCCCCTCTGCGTGCTACCGATCC
14995315 TGTTATCGTA
Statistics
Matches: 148, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
158 107 0.72
159 41 0.28
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
TCCCCCTCTGCGTGCTACCGATCCCACTACCACAACCCTCAGTCCGGTTAGGGCATAGACATGGA
ATGAACTCCTTATGCTTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCGGTCGGAGAGGC
AAAATGCGCAAGCCGGAGATCGGCCCAG
Found at i:14995350 original size:158 final size:158
Alignment explanation
Indices: 14995027--14995373 Score: 376
Period size: 158 Copynumber: 2.2 Consensus size: 158
14995017 TCCTACTAAG
* * * *
14995027 GCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAG
1 GCATAGACATGGAATGAACTCCTTATGCTTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAG
* * * * * * *
14995092 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTTTGTGTGCTGCCGGTCC
66 CGGTCGGAGAGGCAAAATGCGCAAGCCGGAGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATCC
* *
14995157 CACTACCACAACCCTCAGTCCGGTTGGG
131 CACTACCACAACCCTCAGTCCGGTTAGA
** **
14995185 GCATAGACATGGAATGAACTCCTTATGCTTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCAG
1 GCATAGACATGGAATGAACTCCTTATGCTTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAG
* * * *
14995250 TCGGTTGGAGAGGCAGAATGCGTAAGCCGGAGATCGGCCCAGTCCCCC-CTGCGTGCTATCGATC
66 -CGGTCGGAGAGGCAAAATGCGCAAGCCGGAGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
*** * ** *
14995314 CTGTTATCGTAACCCTCGGTCCGGTTAGA
130 CCACTACCACAACCCTCAGTCCGGTTAGA
* *
14995343 TCTTAGAC-TAGGAATGAACT-CTGTATGCTTA
1 GCATAGACAT-GGAATGAACTCCT-TATGCTTA
14995374 GACTGGGGAT
Statistics
Matches: 156, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.02
158 112 0.72
159 41 0.26
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCATAGACATGGAATGAACTCCTTATGCTTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAG
CGGTCGGAGAGGCAAAATGCGCAAGCCGGAGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATCC
CACTACCACAACCCTCAGTCCGGTTAGA
Found at i:14995385 original size:26 final size:26
Alignment explanation
Indices: 14995344--14995396 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14995334 CCGGTTAGAT
*
14995344 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14995370 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14995396 C
1 C
14995397 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14995580 original size:26 final size:26
Alignment explanation
Indices: 14995542--14995594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14995532 CTGGTCTGAT
14995542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14995568 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14995594 C
1 C
14995595 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14995899 original size:159 final size:160
Alignment explanation
Indices: 14995736--14996083 Score: 407
Period size: 160 Copynumber: 2.2 Consensus size: 160
14995726 TCTTACACTG
** * * * ***
14995736 GGAATGAACTCCGTATGCCTAAGTTAACCTACGAAATGAGTGT-TCGGC-CGTTGAGTTGACCGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGTCGGCAC-TT-AACCGACCGG
* * * * * * *
14995799 AAAGGCATAATGCGCAAG-TCGGGGATTGGCCC-AGTCCCCCTCTGCGTGCTGTCGGTCCTGTTG
64 AAAGGCAGAATACGCAAGCT-GAGGAATAGCCCGAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTG
* * * *
14995862 CCATAACCCTCGGTCTGGTTGGGGCTTAGACAT
128 CCACAACCCTAGGTCCGGCTGGGGCTTAGACAT
* * * *
14995895 GGAATGAACTCCGTATGCCTAAGCCAACCTGCAAAACGAGCGTGTGGGCACTTAACCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGTCGGCACTTAACCGACCGGAA
*
14995960 AGGCAGAATACGCAAGCTGAGGAATAGCCCGATTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
66 AGGCAGAATACGCAAGCTGAGGAATAGCCCGAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
*
14996025 CAACCCTAGGTCCGGCTGGGGCTTAGACTT
131 CAACCCTAGGTCCGGCTGGGGCTTAGACAT
*
14996055 GGAATGAACTCCCTATGCCTAAGCCAACC
1 GGAATGAACTCCGTATGCCTAAGCCAACC
14996084 CACGATACGG
Statistics
Matches: 159, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
159 67 0.42
160 91 0.57
161 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (160 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGTCGGCACTTAACCGACCGGAA
AGGCAGAATACGCAAGCTGAGGAATAGCCCGAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
CAACCCTAGGTCCGGCTGGGGCTTAGACAT
Found at i:14996190 original size:860 final size:846
Alignment explanation
Indices: 14994702--14996622 Score: 2085
Period size: 860 Copynumber: 2.2 Consensus size: 846
14994692 GATCCTACCA
* *
14994702 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCAT
1 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
* * * * * * *
14994767 GGAACGAGCGTGCGGGCACTCAGCAGGTCGGAGAGGCAGAATTCACAAGCCAGGGACCGGCCTGA
66 GAAACGAGCGTGAGGGCACTCAGCAGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGA
* * * * * *
14994832 TCCCCCCTACGA-GCTGTCGATCCAAGTGCCGTAACCCTCGGTCTGGTCCAATCTTAGATTGGGA
131 TCCCCCCTGC-ATGCTGTCGATCC-TGTGCCGTAACCCTCAGTC-CGTCCGATCTTAGACTGGGA
*
14994896 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCATTGAGCCGATCAAAGGTC
193 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCATTGAGCCGAGCAAAGGTC
14994961 GGGGATTGGCCCGATCCCACTCTGCGTGCTACCGGTCTCATTGCCACAACCCGCGGTCCTACTAA
258 GGGGATTGGCCCGATCCCACTCTGCGTGCTACCGGTCTCATTGCCACAACCCGCGGTCCTACTAA
14995026 GGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCA
323 GGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAAACAGGCGTGCGGGCACTCA
* * * * * * * * *
14995091 GCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGTCCGGTCCCCCTTTGTGTGCTGCCGGTC
387 ACCGACGGAGAGGCAAAATACGCAAGCCGGGAATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGTC
* * *
14995156 CCACTACCACAACCCTCAGTCCGGTTGGGGCATAGACATGGAATGAACTCCTTATGCTTAAGCCA
452 CCACTACCACAACCCTCAGTCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
14995221 ACCCACGAAATGGGCATGCGGGTGCTCAGTCGGTTGGAGAGGCAGAATGCGTAAGCCGGAGATCG
517 ACCCACGAAACGGGCATACGGGTGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGAGATCG
* * * *
14995286 GCCCAGTCCCCCCTGCGTGCTATCGATCCTGTTATCGTAACCCTCGGTCCGGTTAGATCTTAGAC
582 GCCCAGTCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCAGTCCGATTAGATCTTAGAC
* *
14995351 T-AGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACACGAAA
647 TGA-GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACACACGAAA
** * * * * * * * *
14995415 CGAGCGTCCGAG-TGCTCAGCCGA-TCGGATAGGCCAATCAGAGAGGCAGAATGCGTAAGTCGGG
711 CGAGCGTCCG-GCCACTCAACCCACT-GGAGAGGACAACCAGAGAGGCAGAATGCGCAAGCCAGG
** * * *
14995478 GATTGACTTGGTCACCCCTTGCGTGCTGCCG-A-T-C-CT-G-CTGC-T-GCAACCCTTAG-TCT
774 GATTGACCCGGTC-CCCCTTGCGTGATGCAGAACTGCGCTGGCCTGCATCGCAACCC-TAGATCC
*
14995534 GGTCTGATCT
837 GGTCCGATCT
* *
14995544 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
* * * * * *
14995609 GAAACGAGCGTGTGGGCACTCAACCGGTCAAAGAGGCAGAAGGCACAAGCCGGGGATCGACCC-A
66 GAAACGAGCGTGAGGGCACTCAGCAGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGA
* * * * * *
14995673 GTCCCATCTTGCATGCTATCGATCCTGCTACCGTAACCCTCAGTCCAGTTCGATCTTACACTGGG
131 -TCCC-CCCTGCATGCTGTCGATCCTG-TGCCGTAACCCTCAGTCC-GTCCGATCTTAGACTGGG
* * * * *
14995738 AATGAACTCCGTATGCCTAAGTTAACCTACGAAATGAGTGTTC-GGCCGTTGAGTTGACCGGAAA
192 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGG-CATTGA---G-CC-G--A
* ** *
14995802 GGCATAATGCGCAAGTCGGGGATTGGCCC-AGTCCCCCTCTGCGTGCTGTCGGTC-CTGTTGCCA
249 -GCA-AA---G---GTCGGGGATTGGCCCGA-TCCCACTCTGCGTGCTACCGGTCTC-ATTGCCA
* * ** ** * *
14995865 TAACCCTCGGT-CTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTGCA-
304 CAACCCGCGGTCCT-ACTAAGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACC--CAG
* * * *
14995928 AAAC-GAGCGTGTGGGCACTTAACCGACTGGAGAGGCAGAATACGCAAGCTGAGGAAT-AGCCCG
366 AAACAG-GCGTGCGGGCACTCAACCGAC-GGAGAGGCAAAATACGCAAGCCG-GGAATCAGCCCG
* * * * * *
14995991 ATTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCT-AGGTCCGGCTGGGGCTTAGACTT
428 -GTCCCCCTCTGCGTGCTGCCGGTCCCACTACCACAACCCTCA-GTCCGGCTGGGGCATAGACAT
* * *
14996055 GGAATGAACTCCCTATGCCTAAGCCAACCCACGATACGGGCGTACGGTTGCTCAGTCGATCGGAG
491 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGTGCTCAGTCGATCGGAG
* * * * * * *
14996120 AGGCAGAATGCGTAAGCTGGGGATCGG-CCTGATCCCCCCTGTGTGTTGTCGATCCTGCTGTCGC
556 AGGCAGAATGCGTAAGCCGGAGATCGGCCCAG-TCCCCCCTGCGTGCTATCGATCCTGCTATCGC
* *
14996184 AACCCTCAGTTCGATTTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
620 AACCCTCAGTCCGATTAGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* ** * *
14996249 CCGTATGCCTAAGCCAACCCGTGAAACGAGCGTGCGGCCACTCAACCCACTGGAGAGGACGACCA
685 CCGTATGCCTAAGCCAACACACGAAACGAGCGTCCGGCCACTCAACCCACTGGAGAGGACAACCA
* * *
14996314 GAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCTCCCTTGCGTGATGTAGATACTGCTGCT
750 GAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCTTGCGTGATGCAGA-ACTGC-GCT
*
14996379 GGTCCTGCTATCGCAACCCTCGATCCGGTCCGATCT
813 GG-CCTGC-ATCGCAACCCTAGATCCGGTCCGATCT
* *
14996415 TAGACTAGGAATGAACTCCACATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
1 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
* * ** *
14996480 GAAATGAGCGTGCAGGG-GCTCAGTTGGTCGGAA-AGGCAGAATGCACAAGCCAGGGATTGACCC
66 GAAACGAGCGTG-AGGGCACTCAGCAGGTC-GAAGAGGCAGAATGCACAAGCCAGGGATCGACCC
* * *
14996543 GATCCCCCCTGCGTGCTGTCGATCCTATTGCTGTAACCCTCAGTCCGATCCGA-CTTAGACTGGG
129 GATCCCCCCTGCATGCTGTCGATCCT-GTGCCGTAACCCTCAGTCCG-TCCGATCTTAGACTGGG
*
14996607 AATGAACTCTGTATGC
192 AATGAACTCCGTATGC
14996623 TTAGACTGGG
Statistics
Matches: 887, Mismatches: 139, Indels: 79
0.80 0.13 0.07
Matches are distributed among these distances:
841 1 0.00
842 120 0.14
843 86 0.10
846 1 0.00
847 2 0.00
848 1 0.00
850 1 0.00
851 2 0.00
852 2 0.00
855 1 0.00
857 5 0.01
858 109 0.12
859 42 0.05
860 302 0.34
861 3 0.00
862 1 0.00
863 1 0.00
865 2 0.00
866 1 0.00
868 4 0.00
869 26 0.03
870 39 0.04
871 129 0.15
872 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (846 bp):
TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGAGGGCACTCAGCAGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGA
TCCCCCCTGCATGCTGTCGATCCTGTGCCGTAACCCTCAGTCCGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCATTGAGCCGAGCAAAGGTCGGG
GATTGGCCCGATCCCACTCTGCGTGCTACCGGTCTCATTGCCACAACCCGCGGTCCTACTAAGGC
ATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAACAGGCGTGCGGGCACTCAACCG
ACGGAGAGGCAAAATACGCAAGCCGGGAATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCAC
TACCACAACCCTCAGTCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGGGCATACGGGTGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGAGATCGGCCC
AGTCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCAGTCCGATTAGATCTTAGACTGAG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGC
GTCCGGCCACTCAACCCACTGGAGAGGACAACCAGAGAGGCAGAATGCGCAAGCCAGGGATTGAC
CCGGTCCCCCTTGCGTGATGCAGAACTGCGCTGGCCTGCATCGCAACCCTAGATCCGGTCCGATC
T
Found at i:14996245 original size:26 final size:26
Alignment explanation
Indices: 14996204--14996256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14996194 TCGATTTGAT
14996204 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
14996230 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14996256 C
1 C
14996257 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14996632 original size:26 final size:26
Alignment explanation
Indices: 14996596--14996648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14996586 TCCGATCCGA
*
14996596 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
14996622 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
14996648 C
1 C
14996649 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:14997357 original size:26 final size:26
Alignment explanation
Indices: 14997320--14997371 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14997310 GCTCAAAATA
* *
14997320 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATCAACTCCGTATGC
14997346 TTAGACAT-GGAATCAACTCCGTATGC
1 TTAGAC-TGGGAATCAACTCCGTATGC
14997372 CCAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCGTATGC
Found at i:14997643 original size:159 final size:158
Alignment explanation
Indices: 14997344--14997783 Score: 454
Period size: 159 Copynumber: 2.8 Consensus size: 158
14997334 AACTCTGTAT
* * * *
14997344 GCTTAGACATGGAATCAACTCCGTATGCCCAAGCCAACCTATGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTCA
*** *** *** *
14997408 GCCGACCGGAGAGGCAGAATATGCAAGCCGGGGATCGGCCCGGTCCCCCACTGTATGCTGTCGGT
65 GCCGGTAGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCACTACGTGCTGCCGGT
* ** ** *
14997473 CCTGCTACCACAACTTTTTGTCCGGCTGCG
129 CCCGCTACCACAACCCTCGGTCCGACTGCG
* *
14997503 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGGGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
* * * ** * *
14997568 CCGGTAGGAGAGGAACAATGCACAAGCCGGGGATCGACCTAGTCCCTCTCTACGTGCTGCCTGTC
66 CCGGTAGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCC-CACTACGTGCTGCCGGTC
* * *
14997633 CCGCTGCCACAACCCTCGGTCTGACTGGG
130 CCGCTACCACAACCCTCGGTCCGACTGCG
** * * * * *
14997662 GCTTAGACATGGAATGAACTCCC-ATGCCTAAGTGAATCCACGAAACAGGCATGTGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
* *
14997726 TCGGTCA-GAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTG
66 CCGGT-AGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCACTACGTGCTG
14997784 TCGATCCTGC
Statistics
Matches: 231, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
157 11 0.05
158 75 0.32
159 144 0.62
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
CCGGTAGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCACTACGTGCTGCCGGTCC
CGCTACCACAACCCTCGGTCCGACTGCG
Found at i:14998585 original size:26 final size:26
Alignment explanation
Indices: 14998543--14998595 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14998533 GGCTCAAAAT
14998543 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14998569 CTTAGACAT-GGATTGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
14998595 C
1 C
14998596 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14998924 original size:159 final size:157
Alignment explanation
Indices: 14998568--14999004 Score: 425
Period size: 159 Copynumber: 2.8 Consensus size: 157
14998558 AACTCCGTAT
* * * * * *
14998568 GCTTAGACATGGATTGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACAT-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * ** * ** *
14998633 CCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTACGTGCTGTCGATCC
65 CCAGTCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGTGTGCTCTCGATCC
* ** * *
14998698 TGCTATCGTAACCCTCGATCTGATCTGA
130 TGCTACCACAACCCTCGATCTCAGCTGA
* * * ** *
14998726 TCTTAGACTAGGAATGAACTCCATATGCATAATTCAACCCATGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGAC-ATGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * *
14998791 CCAGTCGAAAAGGCATAATGCGCAAGTCACGGATCGACCCGATCCCCCTCTGTGTGCTACT-GGT
65 CCAGTCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCC-CTGTGTGCT-CTCGAT
* *
14998855 CCTGCTGCCACAACCCTC-AGTC-CAGCTGGG
128 CCTGCTACCACAACCCTCGA-TCTCAGCT-GA
* * *
14998885 GCTTAGACATGAACTGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAA
1 GCTTAGACATGAA-TGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
*
14998950 CC-GATCGAAGAGGCAGAATGCGTAAGCCAAGGATCGGCCC-AGTCCCCCCTGTGTG
65 CCAG-TCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGA-TCCCCCCTGTGTG
14999005 ATGCAGATCC
Statistics
Matches: 224, Mismatches: 47, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 107 0.48
159 116 0.52
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CAGTCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTGTGTGCTCTCGATCCT
GCTACCACAACCCTCGATCTCAGCTGA
Found at i:14999485 original size:26 final size:26
Alignment explanation
Indices: 14999447--14999499 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
14999437 CCAGTCTGAT
14999447 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
14999473 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
14999499 C
1 C
14999500 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15000607 original size:159 final size:160
Alignment explanation
Indices: 15000375--15000817 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 160
15000365 AACTCTGTAT
* * * * *
15000375 GCTTAGACATTGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * *
15000440 CCAGCCGGAGAGGCAA-AATACGCAAGTCGAGGATCGCCCCGA-TCACCCACTGCGTGTTGTCAG
66 CCGGCCGGAGAGGCAACAATACACAAGCCGAGGATCG-CCCGAGTCACCCACTACGTGCTGTCAG
* ** *
15000503 TCCCGCTGCCACAACTCTTTGTCCGACCGGG
130 TCCCGCTGCCACAACCCTCGGTCCAACCGGG
* * * *
15000534 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGGGGGCGCTTAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
15000599 CCGGCCGGAGAGG-AACAATGCACAAGCCGGGGATTGGCCTAGTCCCCCTCTACGTGCTGTCGGT
66 CCGGCCGGAGAGGCAACAATACACAAGCCGAGGATCGCCCGAGTCACCCACTACGTGCTGTCAGT
* *
15000663 CCTGCTGCCACAACCCTCGGTCCAACTGGG
131 CCCGCTGCCACAACCCTCGGTCCAACCGGG
* * * * * *
15000693 GCTTAGACATGGAATGAACTCCTTATGCCTAAACGAACCCATGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * *
15000758 TCGGCCGGAGAGGC-AGAATGCACAAGCCGGGGATCAGCTCG-GTGC-CCC-CTACGTGCTGTC
66 CCGGCCGGAGAGGCAACAATACACAAGCCGAGGATC-GCCCGAGT-CACCCACTACGTGCTGTC
15000818 GATCCTATTG
Statistics
Matches: 235, Mismatches: 44, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
158 17 0.07
159 215 0.91
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAACAATACACAAGCCGAGGATCGCCCGAGTCACCCACTACGTGCTGTCAGT
CCCGCTGCCACAACCCTCGGTCCAACCGGG
Found at i:15000878 original size:158 final size:159
Alignment explanation
Indices: 15000375--15000878 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 159
15000365 AACTCTGTAT
* * * * * * * *
15000375 GCTTAGACATTGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCATGAAACGGGCGTGCGAGCACTCAG
* * * * * ** * * * *
15000440 CCAGCCGGAGAGGCAA-AATACGCAAGTCGAGGATC-GCCCCGATCACCCACTGCGTGTTGTC-A
66 CCGGCCGGAGAGG-AACAATGCACAAGCCGGGGATCAGCCTAG-TCCCCCTCTACGTGCTGTCGA
** * ** * * *
15000502 GTCCCGCTGCCACAACTCTTTGTCCGACCGGG
129 -TCCTACTGCCACAACCCTCGGTCCAACTGGA
* * * * * * * * *
15000534 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGGGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCATGAAACGGGCGTGCGAGCACTCAG
** *
15000599 CCGGCCGGAGAGGAACAATGCACAAGCCGGGGATTGGCCTAGTCCCCCTCTACGTGCTGTCGGTC
66 CCGGCCGGAGAGGAACAATGCACAAGCCGGGGATCAGCCTAGTCCCCCTCTACGTGCTGTCGATC
* *
15000664 CTGCTGCCACAACCCTCGGTCCAACTGGG
131 CTACTGCCACAACCCTCGGTCCAACTGGA
* *
15000693 GCTTAGACATGGAATGAACTCCTTATGCCTAAACGAACCCATGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCATGAAACGGGCGTGCGAGCACTCAG
* * * * *
15000758 TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCAG-CTCGGTGCCCC-CTACGTGCTGTCGAT
66 CCGGCCGGAGAGGAACAATGCACAAGCCGGGGATCAGCCT-AGTCCCCCTCTACGTGCTGTCGAT
* * * *
15000821 CCTATTGTCGCAACCCTCGGTCCGATCT-GA
130 CCTACTGCCACAACCCTCGGTCC-AACTGGA
*
15000851 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
15000879 TTAGACTAGG
Statistics
Matches: 285, Mismatches: 54, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 62 0.22
159 218 0.76
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCATGAAACGGGCGTGCGAGCACTCAG
CCGGCCGGAGAGGAACAATGCACAAGCCGGGGATCAGCCTAGTCCCCCTCTACGTGCTGTCGATC
CTACTGCCACAACCCTCGGTCCAACTGGA
Found at i:15001862 original size:159 final size:159
Alignment explanation
Indices: 15001580--15002033 Score: 540
Period size: 159 Copynumber: 2.9 Consensus size: 159
15001570 CAGCACATGG
* * * * *
15001580 AATGAAC-TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGGCCA-GAG
1 AATGAACTTCC-TATGCCTAAGCTAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGG-CAGGAG
* * * * *
15001643 AGGCAGAATACGCAAGCTGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGGTCTCGCTGCCAC
64 AGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
*
15001708 AACCCTCGGTTCGGCTAGGGCTTACACATAA
129 AACCCTCGGTTCAGCTAGGGCTTACACATAA
* * * *
15001739 AATGAACTTCCTATGCCTAAGCTAACCCACGAAATGGGCGTGGGGGCACTCAGCCGGTAGGAGAG
1 AATGAACTTCCTATGCCTAAGCTAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGCAGGAGAG
* * * *
15001804 GCATAATGCGCAAGCTGGGGATTGGTCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA
66 GCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA
* * * **
15001869 CCCTCGATTCAGCTGGGGCTTAGACATGG
131 CCCTCGGTTCAGCTAGGGCTTACACATAA
* * * * * *
15001898 AATGAACTCCCTATGCCTACG-TGAACCCACGAAATGGGCGTGTGGGTGCTCAGTCGACCGGAGA
1 AATGAACTTCCTATGCCTAAGCT-AACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGCAGGAGA
* ** *
15001962 GGCAGAATGCGCAAGCTGGGGATCGGCCCGGT-CCCC-CTGCGTGCTGTCGATCCTACTGCCGCA
65 GGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
15002025 ACCCTCGGT
130 ACCCTCGGT
15002034 CCGGTCTGAT
Statistics
Matches: 250, Mismatches: 42, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
157 31 0.12
158 6 0.02
159 210 0.84
160 3 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (159 bp):
AATGAACTTCCTATGCCTAAGCTAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGCAGGAGAG
GCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA
CCCTCGGTTCAGCTAGGGCTTACACATAA
Found at i:15002095 original size:26 final size:26
Alignment explanation
Indices: 15002044--15002096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15002034 CCGGTCTGAT
**
15002044 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15002070 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15002096 C
1 C
15002097 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15002194 original size:183 final size:183
Alignment explanation
Indices: 15001886--15002352 Score: 623
Period size: 183 Copynumber: 2.6 Consensus size: 183
15001876 TTCAGCTGGG
* * * * * * * *
15001886 GCTTAGACAT-GGAATGAACTCCCTATGCCTACGTGAACCCACGAAATGGGCGTGTGGGTGCTCA
1 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
15001950 GTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCC
65 GTCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCAGCGTGCTGTCGATCC
*
15002015 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
130 TACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
* * *
15002069 GCTTAGACTGGGGATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
15002134 TTGGCCGGAGAGGCAGAATGCGCAAG-TCAGGGATCGGTTCGGTCCCCCAGCGTGCTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCT-AGGGATCGGCCCGGTCCCCCAGCGTGCTGTCGATCC
* * *
15002198 TGCTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTAT
130 TACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
* * * * * *
15002252 GCTTAGACTGGGGATGAACTCTATATGCCTAAGTCAACCCACAAAACAAGCGTACGGGCTCTCAA
1 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15002317 CCGACCAGAGAGGCAGGATGCGCAAGCTCGGGATCG
66 TCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCG
15002353 AACGGGTGGT
Statistics
Matches: 245, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
182 2 0.01
183 242 0.99
184 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.21
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCAGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:15002278 original size:26 final size:26
Alignment explanation
Indices: 15002227--15002279 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15002217 CCGGTCTGAT
* *
15002227 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
15002253 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
15002279 C
1 C
15002280 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:15003476 original size:26 final size:26
Alignment explanation
Indices: 15003447--15003499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15003437 CCGGTCCAAT
15003447 CTTAAACT-GGGAATGAACTCCGTATG
1 CTTAAACTAGGG-ATGAACTCCGTATG
*
15003473 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAAACTAGGGATGAACTCCGTATG
15003499 C
1 C
15003500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGGATGAACTCCGTATG
Found at i:15004261 original size:159 final size:159
Alignment explanation
Indices: 15003830--15004265 Score: 391
Period size: 159 Copynumber: 2.7 Consensus size: 159
15003820 AACTCCATAT
* * *
15003830 GCTTAGAAATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGTGTGCGTGCGGGCGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-G-GT--GTGCGGGCGC
* * * * * * * * *
15003895 TCAATCGACCGGAGAGGTAGAATACGTAAG-TCAGGGA-CTGGCCTGTTCCTCCC-CTGCGTGAT
62 TCAGTCGATCGGAGAGGCAGAATGCGCAAGCT-GGGGATC-GACCTGATCC-CCCTCTACGTGAT
* * *
15003957 GTGGATCCTGCTACCGCAACCCTCGGTCCGGTCTGA
124 GTCGATCCCGCTACCACAACCCTCGGTCCGGTCTGA
* * * * * * ** * * *
15003993 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCATGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCA
* * * ** *
15004057 G-CTGGTCGGAGAGGCAAAATGCGCAAGCCGAAGATC-AGCCTGATCCCCCTCTACGTGCTGTCG
65 GTC-GATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCTGATCCCCCTCTACGTGATGTCG
* *
15004120 ATCCCGCTACCACAACCCTCGGTCTGG-CTGGG
128 ATCCCGCTACCACAACCCTCGGTCCGGTCT-GA
* *
15004152 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
*
15004217 TCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCT
66 TCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGATCCCCCT
15004266 GCATGCTACC
Statistics
Matches: 210, Mismatches: 53, Indels: 24
0.73 0.18 0.08
Matches are distributed among these distances:
158 6 0.03
159 159 0.76
160 4 0.02
161 1 0.00
162 1 0.00
163 39 0.19
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
TCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGATCCCCCTCTACGTGATGTCGATC
CCGCTACCACAACCCTCGGTCCGGTCTGA
Found at i:15004361 original size:26 final size:26
Alignment explanation
Indices: 15004310--15004362 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15004300 CCGGTCTGAT
* *
15004310 CTTAGACTGGGAATGACCTTCATATG
1 CTTAGACTGGGAATGAACATCATATG
*
15004336 CTTAGACT-GGAGATGAACATCGTATG
1 CTTAGACTGGGA-ATGAACATCATATG
15004362 C
1 C
15004363 CTATCTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCATATG
Found at i:15005644 original size:26 final size:26
Alignment explanation
Indices: 15005605--15005655 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15005595 GGTCTGATCT
*
15005605 TAGACTGGGAATGAACTTTGTATGCA
1 TAGACTGGGAATGAACTATGTATGCA
15005631 TAGACTAGGG-ATGAACTATGTATGC
1 TAGACT-GGGAATGAACTATGTATGC
15005656 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTATGTATGCA
Found at i:15005707 original size:184 final size:185
Alignment explanation
Indices: 15005398--15005776 Score: 467
Period size: 184 Copynumber: 2.1 Consensus size: 185
15005388 CCTTCTGTCG
* *
15005398 CAACCCTCAGTCCGGTCTGATCCTAGACTGGGAATGATCTCCGTATGCTTAGTAATGGAATGAAC
1 CAACCCTCAGTCCGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCATAGTAATGGAATGAAC
* * *
15005463 TCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGGTCGAAGAGGCAGAAT
66 TACATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAACCAGTCGAAGAGGCAGAAT
* ** **
15005528 GCGCAAGCCGAGGATCGGCTCGAT-CCCCTCTGCCTGCTGTCGATCCTGCTGCCA
131 GCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCCTGCTACCGATCCCACTGCCA
* * ** * *
15005582 CAACCCTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCATAG-ACTAGGGATGAA
1 CAACCCTCAGTCCGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCATAGTAAT-GGAATGAA
** ** * * * *
15005646 CTATGTATGCCTAAGTTAACCCACGAAACGATCGTGC-GGTCGCTCAACCAGTCGAAGAGGCATA
65 CTACATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGT-GCTCAACCAGTCGAAGAGGCAGA
* * * *
15005710 ATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTCCCACTGCCA
129 ATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCCTGCTACCGATCCCACTGCCA
15005767 CAACCCTCAG
1 CAACCCTCAG
15005777 CACAGCTGGG
Statistics
Matches: 163, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
183 5 0.03
184 125 0.77
185 33 0.20
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (185 bp):
CAACCCTCAGTCCGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCATAGTAATGGAATGAAC
TACATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAACCAGTCGAAGAGGCAGAAT
GCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCCTGCTACCGATCCCACTGCCA
Found at i:15007384 original size:26 final size:26
Alignment explanation
Indices: 15007355--15007407 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15007345 CCGATCCGAT
15007355 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15007381 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15007407 C
1 C
15007408 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15007603 original size:26 final size:26
Alignment explanation
Indices: 15007565--15007617 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15007555 CTGATCCAAT
*
15007565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15007591 CTTAGACAT-GGAATGAGCTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15007617 C
1 C
15007618 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15007898 original size:159 final size:159
Alignment explanation
Indices: 15007730--15008019 Score: 341
Period size: 159 Copynumber: 1.8 Consensus size: 159
15007720 TTGCTGTCGT
** * * * *
15007730 AACCCTCGGTCTGTTTCGATCTTAAAC-TAGGAATGAACTCCGTATGCCTAAGTCAAACCACGAA
1 AACCCTCGGTCTGACTCGAGCTTAAACAT-GGAATGAACTCCCTATACCTAAGCCAAACCACGAA
* *
15007794 ACAAGCGTACGAGCACTGAGCCAGCCGGAGAGGCATAATGCGCAAGCCAGGGA-TCGGCCCGGTC
65 ACAAGCGTACGAGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACT-GGCCCGGTC
15007858 CCCTTCTATGTGCTGTCGATCCTGTTGCCAC
129 CCCTTCTATGTGCTGTCGATCCTGTTGCCAC
* * * * * * *
15007889 AACCTTCGGTCTGACTGGGGCTTAGACATGGAATTAACTCCCTATACCTAAGCCAACCCATGAAA
1 AACCCTCGGTCTGACTCGAGCTTAAACATGGAATGAACTCCCTATACCTAAGCCAAACCACGAAA
** * * ** * *
15007954 CGGGCGTACGGGTACTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCTCGGTCCC
66 CAAGCGTACGAGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCGGTCCC
15008019 C
131 C
15008020 CCTACGTGCT
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
159 104 0.98
160 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
AACCCTCGGTCTGACTCGAGCTTAAACATGGAATGAACTCCCTATACCTAAGCCAAACCACGAAA
CAAGCGTACGAGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGACTGGCCCGGTCCC
CTTCTATGTGCTGTCGATCCTGTTGCCAC
Found at i:15008108 original size:26 final size:26
Alignment explanation
Indices: 15008067--15008119 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15008057 CCAATCTGAT
15008067 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* * *
15008093 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15008119 C
1 C
15008120 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:15008989 original size:26 final size:26
Alignment explanation
Indices: 15008948--15009000 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15008938 TCGATCTGAT
15008948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15008974 CTTAGACT-GGAGATGAACTCTGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
15009000 C
1 C
15009001 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15009858 original size:26 final size:26
Alignment explanation
Indices: 15009829--15009881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15009819 CCGGTCCGAT
15009829 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15009855 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15009881 C
1 C
15009882 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15011048 original size:184 final size:184
Alignment explanation
Indices: 15010734--15011301 Score: 595
Period size: 196 Copynumber: 3.0 Consensus size: 184
15010724 TCTGGCTAGG
* * * * * *
15010734 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCATGAAACGGGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * ** * * *
15010799 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGGTCGATCCCCCCTGCGTGTTGCCGATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGCCT-GATCCCCCCTGTGTGCTGTCGATCC
* * * *
15010864 T-ATTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
130 TCCTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
15010918 GCTTAGA-TTGTGGATGAACTCCGTATGCCTAAGTCAACCCTTGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
*
15010982 GCCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGATCCCCCCTATGTGCTGTCGATC
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATC-GCCTGATCCCCCCTGTGTGCTGTCGA--
* *
15011047 CTGCTGCTGGTCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACGGGGAATGAACTCTGT
127 -T-C--C---TCCT--TGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGT
15011112 AT
183 AT
* * * * *
15011114 GATTATACATGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAATGAGCGTGCGGGCGA-TCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC-ACTCA
* * * * * *
15011178 GCCGGTCGGAGAGGCAGAATGCGTAAGCTAGGGACCGACCTGGTCCTCCCCTGTGTACTGTCGAT
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCG-CCTGATCC-CCCCTGTGTGCTGTCGAT
* * * *
15011243 CTTGCTGGT-GCAACCGTCGGTCCGATCTGATCTTAGACTGGGGAATGAACTCCGTAT
128 CCTCCTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACT-GGGAATGAACTCCGTAT
15011300 GC
1 GC
15011302 CTAAATGAAC
Statistics
Matches: 319, Mismatches: 46, Indels: 36
0.80 0.11 0.09
Matches are distributed among these distances:
183 2 0.01
184 103 0.32
185 30 0.09
186 19 0.06
187 1 0.00
188 4 0.01
190 1 0.00
193 2 0.01
194 2 0.01
195 1 0.00
196 136 0.43
197 18 0.06
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGCCTGATCCCCCCTGTGTGCTGTCGATCCT
CCTTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15011626 original size:26 final size:26
Alignment explanation
Indices: 15011590--15011642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15011580 CTGGTCCGAT
*
15011590 CTTAGACTGGGAATCAACTACGTATG
1 CTTAGACTGGGAATAAACTACGTATG
* *
15011616 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTACGTATG
15011642 C
1 C
15011643 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTACGTATG
Found at i:15012527 original size:26 final size:26
Alignment explanation
Indices: 15012487--15012537 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15012477 CGGTACAATC
15012487 TTAGACTAGGAATGAACTCCATATGT
1 TTAGACTAGGAATGAACTCCATATGT
* * *
15012513 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
15012538 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:15013109 original size:159 final size:157
Alignment explanation
Indices: 15012657--15013138 Score: 409
Period size: 159 Copynumber: 3.0 Consensus size: 157
15012647 CCGATCCTCC
* * * *
15012657 TGCTGCCAGTCCTACTACCACAACCCTCGGAT-CGGCTGGGGCTTAGATATGGAATGAACTCCGT
1 TGCTGTCAGTCCTACT-CCACAACCCTCGG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* ** ** * *
15012721 ATGCCTAAGCCAACCCATGAAAC-GAGCATGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGTGC
64 ATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGC
* * **
15012785 AAGCCGAGGAC-CGGCCCGGTCCCCCCCTATG
128 AAGTCG-GGGCTCGG-CCGGTCCCCCCCTGCG
* * * * * * **
15012816 TGCTTTC-GATACTACTCTCGCAACACTCGGTCC-AGTCCGATCTTAGAC-TGGGAATGAACTCC
1 TGCTGTCAG-TCCTACTC-CACAACCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCC
* ** * * * * * * * * * *
15012878 TTATGTTTAAGTCAACGCATGAAACAAGCGTTCGGACACTAAACCAGCCGGAGAGGCATAATGCA
62 CTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCG
* * *
15012943 AAAGTCGGGGCTCGGCTCGATCCCCCTCTGCG
127 CAAGTCGGGGCTCGGC-CGGTCCCCCCCTGCG
*
15012975 TGCTGTCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCAGTCCTACT-CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * *
15013040 TGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAC
65 TGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAA
* *
15013105 GTCGGGGATCGACCTGGTCCCCCCCTGCG
130 GTCGGGGCTCGGCC-GGTCCCCCCCTGCG
15013134 TGCTG
1 TGCTG
15013139 CCGATCCTGC
Statistics
Matches: 242, Mismatches: 68, Indels: 26
0.72 0.20 0.08
Matches are distributed among these distances:
158 10 0.04
159 227 0.94
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
TGCTGTCAGTCCTACTCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAG
TCGGGGCTCGGCCGGTCCCCCCCTGCG
Found at i:15013204 original size:26 final size:26
Alignment explanation
Indices: 15013175--15013227 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15013165 CTGGTCCGAT
*
15013175 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* * *
15013201 CTTACATTGGGGATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
15013227 C
1 C
15013228 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:15013660 original size:670 final size:675
Alignment explanation
Indices: 15012337--15013908 Score: 1751
Period size: 670 Copynumber: 2.3 Consensus size: 675
15012327 AACTCCGTAT
*
15012337 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGC-CTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTC-A
** * *
15012401 GTCGGCCGGAGAGGCAGAATACGCAAC-TCGGGGATCG-CACTCGGT--CCCCT---T-CT-ACG
64 ACCGGCCGGAGAGGCAGAATGCGC-ACGTCGGGGATCGAC-CT-GGTCCCCCCTGCGTGCTGCCG
** * * * * *
15012457 -TGTTG-TCGCAACCTTTGGTCCGGTACAATCTTAGACTAGGAATGAACTCCATATGTTTAGACT
126 ATCCTGCTCGCAACCCTTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
*
15012520 GGGGATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAACGTACGGCGCTCAGCCAGCTGGAG
191 GGGGATGAACTCCGTATGCCTAAGTCAAC-CCCAAAACGAACGTACGGCGC-CAGCCAGC-----
*
15012585 AGGCCGGTCGAAGAGGCATAATGCACAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTGCTGCCG
249 --GCCGATCGAAGAGGCATAATGCACAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTGCTGCCG
*
15012650 ATCCTCCTGCTGCCAGTCCTACTACCACAACCCTCGGATCGGCTGGGGCTTAGATATGGAATGAA
312 ATCCTCCTGCTGCCAGTCCTACTACCACAACCCTCGGATCGGCTGGGGCTTAGACATGGAATGAA
* * * ** * *
15012715 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGTCGATCGGAGAGGTAGAA
377 CTCCATATGCCCAAGCCAACCCACGAAACGAGCATGCAAGCGCTCAGCCGATCGGAGAGGCAGAA
** * * *
15012780 TGTGCAAGCCGAGGACCGGCCCGGTCCCCCCCTATGTGCTTTCGATACTACTCTCGCAACACTCG
442 TGCACAAGCCGAGGACCGACCCGAT-CCCCCCTACGTGCTTTCGATACTACTCTCGCAACACTCG
* **
15012845 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCTTATGTTTAAGTCAACGCATGAAACAAGCGTT
506 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACAAGCGTT
* * * * * * * *
15012910 CGGACACTAAACCAGCCGGAGAGGCATAATGCAAAAGTCGGGGCTCGGCTCGATCCCCCTCTGCG
571 CGGACACTAAACCAGCCGAAGAGGCATAATGCAAAAGCCGGGGATCGACCCAATCCCCCTCTACA
* *
15012975 TGCTGTCAGTCCCACTGCCACAACCCTCGGTCCGACTGGG
636 TGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTAGG
*
15013015 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAA
*
15013080 CCGGCCAGAGAGGCAGAATGCGCACGTCGGGGATCGACCTGGTCCCCCCCTGCGTGCTGCCGATC
65 CCGGCCGGAGAGGCAGAATGCGCACGTCGGGGATCGACCTGGT-CCCCCCTGCGTGCTGCCGATC
* * * *
15013145 CTGCTGCTGCAACCCTTGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTACATTG
129 CTGCT-C-GCAACCCTTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
* * *
15013210 GGGATGAACTCCGTATGCCTATGTCAACCCCAAAATGAGCGTACGG-G-CA-CTCAGC-CC-ATC
192 GGGATGAACTCCGTATGCCTAAGTCAACCCCAAAACGAACGTACGGCGCCAGC-CAGCGCCGATC
* * * * *
15013270 GGAGAGGCATAATTCGCAAGCCGAGGATCAGCCCGGTCCCCCT-TGCGTGCTGCCGAT-C-CC-G
256 GAAGAGGCATAATGCACAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCTCCTG
* * * * * * *
15013331 TTGTCAGTCCTGCTGCCATAATCCTCGG-TCCGGCTGGGGCTTAGACATGGAATGAACTTCATAT
321 CTGCCAGTCCTACTACCACAACCCTCGGAT-CGGCTGGGGCTTAGACATGGAATGAACTCCATAT
** *
15013395 GCCCAAGCCAACCCACGAAACGAGTGTGCAAGCGCTCAGCCG-GCTGGAGAGGCAGAATGCACAA
385 GCCCAAGCCAACCCACGAAACGAGCATGCAAGCGCTCAGCCGATC-GGAGAGGCAGAATGCACAA
* * * * * * **
15013459 GCCGGGGGCCGACCCGAT-CCCGCTGCGTG-TTGTCGATCCTGCTAC-CGCAACACTCGGTCTGG
449 GCCGAGGACCGACCCGATCCCCCCTACGTGCTT-TCGATACTACT-CTCGCAACACTCGGTCCAG
** * *
15013521 TTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC-CTATGAAACGAGCGTTCGGGC
512 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGC-ATGAAACAAGCGTTCGGAC
** * ** * * * *
15013585 GTTGAGTCGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCAATCGCCCTTTACATGCTG
576 ACTAAACCAGCCGAAGAGGCATAATGCAAAAGCCGGGGATCGACCCAATCCCCCTCTACATGCTG
*
15013650 CC-GATCCCACTGCCACAACCCTCGGTCCGGCTAGG
641 CCAG-TCCCACTGCCACAACCCTCGGTCCGACTAGG
* * ** * *
15013685 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTAAGGGCACTAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAA
* * * * ** *
15013750 CCGGCCGGAGAGACAAAATGCGCAAGTTGGGGATCGACCCAGTCCCCCCTGCGTGCTGCTGATCC
65 CCGGCCGGAGAGGCAGAATGCGCACGTCGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCC
* * * * *
15013815 TGCTACCACAACCCTCGGTCCAGTCCGTTCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAG
130 TGCT--CGCAACCCTTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
15013880 GGATGAACTCCGTATGCCTAAGTCAACCC
193 GGATGAACTCCGTATGCCTAAGTCAACCC
15013909 ATGAAACGAG
Statistics
Matches: 757, Mismatches: 113, Indels: 57
0.82 0.12 0.06
Matches are distributed among these distances:
669 106 0.14
670 259 0.34
671 3 0.00
672 119 0.16
673 2 0.00
674 1 0.00
675 14 0.02
676 40 0.05
677 7 0.01
678 90 0.12
679 3 0.00
680 5 0.01
683 1 0.00
684 3 0.00
685 8 0.01
686 3 0.00
687 2 0.00
688 16 0.02
689 75 0.10
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (675 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCGCACGTCGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCT
GCTCGCAACCCTTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGA
TGAACTCCGTATGCCTAAGTCAACCCCAAAACGAACGTACGGCGCCAGCCAGCGCCGATCGAAGA
GGCATAATGCACAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCTCCTGCTGCC
AGTCCTACTACCACAACCCTCGGATCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCCAA
GCCAACCCACGAAACGAGCATGCAAGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGG
ACCGACCCGATCCCCCCTACGTGCTTTCGATACTACTCTCGCAACACTCGGTCCAGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCATGAAACAAGCGTTCGGACACTAAACCAG
CCGAAGAGGCATAATGCAAAAGCCGGGGATCGACCCAATCCCCCTCTACATGCTGCCAGTCCCAC
TGCCACAACCCTCGGTCCGACTAGG
Found at i:15013717 original size:159 final size:157
Alignment explanation
Indices: 15013343--15013737 Score: 398
Period size: 157 Copynumber: 2.5 Consensus size: 157
15013333 GTCAGTCCTG
* * * * * *
15013343 CTGCCATAATCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCATATGCCCAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
15013408 CACGAAACGAGTGTGCAAGCGCTCAGCCGGCTGGAGAGGCAGAATGCACAAGCCGGGGGCCGACC
66 CATGAAACGAGCGTGCAAGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGACCGACC
* * * * * **
15013473 CGATCCCGCTGCGTGTTGTCGATCCTG
131 CAATCCCGCTACATGCTGCCGATCCCA
* * * * * * ** *
15013500 CTACCGCAACACTCGGTCTGGTTTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * * * * *
15013564 CTATGAAACGAGCGTTCGGGCGTTGAGTCGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGAC
65 CCATGAAACGAGCGTGCAAGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGACCGAC
15013629 CCAATCGCC-CTTTACATGCTGCCGATCCCA
130 CCAATC-CCGC--TACATGCTGCCGATCCCA
*
15013659 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
*
15013724 CATGAAACGGGCGT
66 CATGAAACGAGCGT
15013738 AAGGGCACTA
Statistics
Matches: 186, Mismatches: 47, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
156 1 0.01
157 105 0.56
158 2 0.01
159 77 0.41
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCAAGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGACCGACC
CAATCCCGCTACATGCTGCCGATCCCA
Found at i:15013755 original size:159 final size:156
Alignment explanation
Indices: 15013338--15013870 Score: 455
Period size: 159 Copynumber: 3.4 Consensus size: 156
15013328 CCGTTGTCAG
* * * * * * *
15013338 TCCTGCTGCCATAATCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCATATGCCCAAGC
1 TCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * * *
15013403 CAACCCACGAAACGAGTGTGCAA--GCGCTCAGCCGGCTGGAGAGGCAGAATGCACAAGCCGGGG
66 CAACCCATGAAACG-G-GCGTAAGGGCGCTAAGCCGGCCGGAGAGGCAAAATGCACAAGCCGGGG
** * * *
15013466 GCCGACCCGATCCCGCTGCGTGTTGTCGA
129 ATCGACCCAATCCC-CTGCGTGCTGCCGA
* * * * * **
15013495 TCCTGCTACCGCAACACTCGGTCTGGTTTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* * * ** * * * * *
15013559 TCAACCTATGAAACGAGCGTTCGGGCGTTGAGTCGGCCGAAGAGGCATAATGCACAAGCCGGGGA
65 CCAACCCATGAAACGGGCGTAAGGGCGCTAAGCCGGCCGGAGAGGCAAAATGCACAAGCCGGGGA
* *
15013624 TCGACCCAATCGCCCTTTACATGCTGCCGA
130 TCGACCCAATC-CCC--TGCGTGCTGCCGA
** * *
15013654 TCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * **
15013719 CAACCCATGAAACGGGCGTAAGGGCACTAAACCGGCCGGAGAGACAAAATGCGCAAGTTGGGGAT
66 CAACCCATGAAACGGGCGTAAGGGCGCTAAGCCGGCCGGAGAGGCAAAATGCACAAGCCGGGGAT
* *
15013784 CGACCCAGTCCCCCCTGCGTGCTGCTGA
131 CGACCCAAT--CCCCTGCGTGCTGCCGA
* * **
15013812 TCCTGCTACCACAACCCTCGGTCCAG-TCCGTTCTTAGAC-TAGGAATGAACTCCGTATGC
1 TCCTGCTACCACAACCCTCGGTCCGGCT-AGGGCTTAGACAT-GGAATGAACTCCGTATGC
15013871 TTAGACTAGG
Statistics
Matches: 292, Mismatches: 73, Indels: 21
0.76 0.19 0.05
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 107 0.37
158 59 0.20
159 118 0.40
160 4 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
TCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGGGCGTAAGGGCGCTAAGCCGGCCGGAGAGGCAAAATGCACAAGCCGGGGAT
CGACCCAATCCCCTGCGTGCTGCCGA
Found at i:15013874 original size:26 final size:26
Alignment explanation
Indices: 15013844--15013896 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15013834 CCAGTCCGTT
15013844 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15013870 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15013896 C
1 C
15013897 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15014607 original size:26 final size:26
Alignment explanation
Indices: 15014570--15014621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15014560 GCTCAAAATA
15014570 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15014596 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
15014622 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15015265 original size:159 final size:157
Alignment explanation
Indices: 15014972--15015466 Score: 480
Period size: 159 Copynumber: 3.1 Consensus size: 157
15014962 GCTTACACAT
* * *
15014972 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * *
15015037 AGGCAGAATGCGCAAGCCGAGGATTGACCTAGTCCCCCCCTGTGTGCT-ATCGATCCTACTGCCA
66 AGGCAGAATGCGCAAG-CGGGGATCGGCCCAGT-CCCCCCTGTGTGCTGCT-GATCCTGCTGCCA
* *
15015101 TAACCCTCGGTCTGATCTGATCTTAGACTG
128 CAACCCTCGATCTGATCTGATCTTAGACTG
* * * * * * *
15015131 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGTGCATACGGGTGCTGAGCCGACC-GAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGGA-
* * * * * *
15015195 GAGGCATAATGCGCAAGTCGGGGATCGGCCCAGTCTTCCTCTGTGTGCTGCTGGTCCCGCTACCA
65 GAGGCAGAATGCGCAAG-CGGGGATCGGCCCAGTC-CCCCCTGTGTGCTGCTGATCCTGCTGCCA
* * **
15015260 CAACCCTCGATCCG-GCTGGGGGCTTAGACAT-
128 CAACCCTCGATCTGATCT--GATCTTAGAC-TG
* * * * *
15015291 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAACCGATCGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * *
15015356 AGGTAGAATGCGTAAGCACGGGATCGGCCC-GATCCCCCCTGCGTGCTGCTGATCCTGCTGCCGC
66 AGGCAGAATGCGCAAGC-GGGGATCGGCCCAG-TCCCCCCTGTGTGCTGCTGATCCTGCTGCCAC
*
15015420 AACCCTCGAT-TGGATTTGATCTTAGACTG
129 AACCCTCGATCT-GATCTGATCTTAGACTG
*
15015449 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
15015467 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 58, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 29 0.11
159 146 0.55
160 87 0.33
161 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCGGGGATCGGCCCAGTCCCCCCTGTGTGCTGCTGATCCTGCTGCCACAA
CCCTCGATCTGATCTGATCTTAGACTG
Found at i:15015476 original size:26 final size:25
Alignment explanation
Indices: 15015440--15015491 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15015430 TGGATTTGAT
*
15015440 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAA-TCCGTATG
*
15015466 CTTAGACTGGGGATGAATCCGTATG
1 CTTAGACTGGGAATGAATCCGTATG
15015491 C
1 C
15015492 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAATCCGTATG
Found at i:15021704 original size:26 final size:26
Alignment explanation
Indices: 15021675--15021727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15021665 CCGATCCGAT
*
15021675 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15021701 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15021727 C
1 C
15021728 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15022223 original size:159 final size:159
Alignment explanation
Indices: 15021700--15022806 Score: 770
Period size: 158 Copynumber: 6.9 Consensus size: 159
15021690 AACTCCGTAT
* * * * * *
15021700 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * ** *
15021764 GCCGGCCGGAGAGGCATAATGTGCAAGCCAGGGATCGACCCAATCCCCCTTTATGTGCTGCCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
* *
15021829 CCTGCTGCCACAACCCTCTCGATT-TGACTGGG
129 CCTGCTGCCACAACCCTC-AG-TTCAGACTGGG
* * * * * *
15021861 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCTACGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * *
15021926 TCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
*** * * * * *
15021991 AATTGCCACGACCCTTAGTCCAGTCT-GA
131 TGCTGCCACAACCCTCAGTTCAGACTGGG
* * * * * * * *
15022019 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCAATGAAACGAGCATGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * *
15022083 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGTTGCCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
*
15022148 CCCGCTGCCACAACCCTCAGTTC-GACTGGG
129 CCTGCTGCCACAACCCTCAGTTCAGACTGGG
* * * *
15022178 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGC-GAGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAG-GCGCTCA
* * * * *
15022242 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCTAGTCCCTCCTGCGTGTTGCCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCTGCGTGCTGCCGAT
* * * *
15022306 CCTGCTGCCACAACCCTC-GGTCTGGCTAGG
129 CCTGCTGCCACAACCCTCAGTTCAGACTGGG
* * ** * * *
15022336 ACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGTAGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCA-GGCGCTCA
* * * * * **
15022401 GTCGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTATCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
* * * ** ***
15022466 C-G--GTC-CAA-TCTTAGACTGGGAAGGAACTCCATAT
130 CTGCTGCCACAACCCTCAG--T--TCA-G-ACT---GGG
* * * * * *
15022500 GCTTAGA-TTGGAGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * * * * * *
15022564 ACCGACCGAAGAGGCATAATGCACAAACGA-GGATCAGCCCGGTCCCCCTCTACGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
* *
15022628 CCCGTTGCCAGTCATGCTACCACAACCCTC-GGTCTGACTGGG
129 -CC--T----G-C-TG---CCACAACCCTCAGTTCAGACTGGG
* * ** * * *
15022670 GCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* ** * * * *
15022735 TCGATCGGAGAGGCAGAATACGCAAGCCAGAGATCGGCCCGGTCCCTCCCTGCGTGCTGCCAATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCC-CCCTGCGTGCTGCCGATC
*
15022800 CTACTGC
130 CTGCTGC
15022807 TGGTCCTGCT
Statistics
Matches: 736, Mismatches: 166, Indels: 90
0.74 0.17 0.09
Matches are distributed among these distances:
154 2 0.00
155 4 0.01
156 2 0.00
157 4 0.01
158 189 0.26
159 183 0.25
160 29 0.04
161 96 0.13
162 19 0.03
163 44 0.06
164 43 0.06
168 1 0.00
170 75 0.10
171 31 0.04
172 2 0.00
173 3 0.00
174 1 0.00
175 1 0.00
178 1 0.00
179 4 0.01
180 2 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCAGTTCAGACTGGG
Found at i:15022571 original size:322 final size:328
Alignment explanation
Indices: 15022178--15022792 Score: 701
Period size: 334 Copynumber: 1.9 Consensus size: 328
15022168 TTCGACTGGG
* * * * *
15022178 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAA
* * * * * *
15022243 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGT-CC-CT-C-CTG-CG-T-GTTG
66 CCGACCGAAGAGGCAGAATGCACAA-ACGAGGATCAGCCCAGTCCCTCTACGCTGTCGATCGTTG
* * * *
15022301 CC-GATCCTGCTGCCACAACCCTCGGTCTGGCTAGGACTTAGACATGGAATGAACTCCCTATGCC
130 CCAG-TCATGCTACCACAACCCTCGGTCTGACTAGGACTTAGACATGGAATGAACTCCCTATACC
** ** * *
15022365 TAAGCCAACCCACAAAACGGGCGTGTAGGGTGCTCAGTCGGCCAGAGAGGCAAAATGCGCAAGCC
194 TAAGCCAACCCACAAAACAAGCGTG-AGGGCACTCAGTCGACCAGAGAGGCAAAATACGCAAGCC
* *
15022430 GGGGATCGGCCCGATCCC-CCCTGCATGCTATCGATCCGGTCCAATCTTAGACTGGGAAGGAACT
258 AGAGATCGGCCCGATCCCTCCCTGCATGCTATCGATCCGGTCCAATCTTAGACTGGGAAGGAACT
15022494 CCATAT
323 CCATAT
* * * * * *
15022500 GCTTAGA-TTGGAGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGA-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCA
* *
15022564 ACCGACCGAAGAGGCATAATGCACAAACGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATC
65 ACCGACCGAAGAGGCAGAATGCACAAACGAGGATCAGCCCAGT--CCCTCTAC--GCTGTCGAT-
* * * *
15022629 CCGTTGCCAGTCATGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGT
125 -CGTTGCCAGTCATGCTACCACAACCCTCGGTCTGACTAGGACTTAGACATGGAATGAACTCCCT
* * * *
15022694 ATACCTAAGCCAACCCACAAAACAAGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATACGCA
189 ATACCTAAGCCAACCCACAAAACAAGCGTGAGGGCACTCAGTCGACCAGAGAGGCAAAATACGCA
* *
15022759 AGCCAGAGATCGGCCCGGTCCCTCCCTGCGTGCT
254 AGCCAGAGATCGGCCCGATCCCTCCCTGCATGCT
15022793 GCCAATCCTA
Statistics
Matches: 236, Mismatches: 41, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
321 16 0.07
322 71 0.30
324 2 0.01
325 2 0.01
326 1 0.00
329 3 0.01
330 2 0.01
331 1 0.00
333 46 0.19
334 91 0.39
335 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (328 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAA
CCGACCGAAGAGGCAGAATGCACAAACGAGGATCAGCCCAGTCCCTCTACGCTGTCGATCGTTGC
CAGTCATGCTACCACAACCCTCGGTCTGACTAGGACTTAGACATGGAATGAACTCCCTATACCTA
AGCCAACCCACAAAACAAGCGTGAGGGCACTCAGTCGACCAGAGAGGCAAAATACGCAAGCCAGA
GATCGGCCCGATCCCTCCCTGCATGCTATCGATCCGGTCCAATCTTAGACTGGGAAGGAACTCCA
TAT
Found at i:15024102 original size:26 final size:26
Alignment explanation
Indices: 15024065--15024117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15024055 GGCTCAAAAT
*
15024065 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
15024091 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15024117 C
1 C
15024118 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15024450 original size:26 final size:26
Alignment explanation
Indices: 15024421--15024473 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15024411 GTAGTCTGAT
*
15024421 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACACTGTATG
15024447 CTTAGACATGGAATGAACACTGTATG
1 CTTAGACATGGAATGAACACTGTATG
15024473 C
1 C
15024474 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACTGTATG
Found at i:15024603 original size:184 final size:184
Alignment explanation
Indices: 15024262--15024631 Score: 433
Period size: 184 Copynumber: 2.0 Consensus size: 184
15024252 TTCGGCTGGG
* * * *
15024262 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCAAGAAACGAGCTGCGGGCGCTTAAT
1 GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCAAGAAACGAGCTGCAGGCGCTTAAC
** * * * *
15024327 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGAACGGCTTGGTCCCCTCCTACGTGCTGTCAATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGAGGAACGGCCTGATCCCCTCCTACGTGCTATCAATCC
* * * *
15024392 TGCTGTCGTAACCCGCAGTGTAGTCTGATCTTAGACTAGGAATGAACTCTGTAT
131 GGCTGCCATAACCCGCAGTGTAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
** *
15024446 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCACA-AAATGAGCGTGCAGGCG-TTC
1 GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCA-AGAAACGAGC-TGCAGGCGCTT-
* * ** ** *
15024509 AGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGTTCGGCCTGAT-CCCTCCTGTGTGCTATCGA
63 AACCGACCGAAGAGGCAGAATGCGCAAGCCGAGGAACGGCCTGATCCCCTCCTACGTGCTATCAA
* * *
15024573 TCCGGCTGCCATAACCCTCGGT-TCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCGGCTGCCATAACCCGCAGTGT-AGTCTGATCTTAGACTAGGAATGAACTCCGTAT
15024630 GC
1 GC
15024632 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 1 0.01
184 111 0.72
185 43 0.28
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCCAAGAAACGAGCTGCAGGCGCTTAAC
CGACCGAAGAGGCAGAATGCGCAAGCCGAGGAACGGCCTGATCCCCTCCTACGTGCTATCAATCC
GGCTGCCATAACCCGCAGTGTAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:15024821 original size:159 final size:158
Alignment explanation
Indices: 15024446--15024908 Score: 437
Period size: 158 Copynumber: 2.9 Consensus size: 158
15024436 AACTCTGTAT
* * * *
15024446 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCATTCAG
* * * * **
15024511 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGTTCGGCCTGATCCCTCCTGTGTGCTATCGATCC
66 CCGACCGAAGAGGCAGAATACGCAAGCCAGGGATCGGCCCGATCCCTCCTACGTGCTATCGATCC
* * * * *
15024576 GGCTGCCATAACCCTCGGTTCAGTCTGA
131 CGCTACCACAACCCTCAGTTCAGGCTGA
* * * * *
15024604 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCATTCA
* * * * * * *
15024668 GCTGGCCGGAGAGGCATAATACGCAAGCCAGGGATCGGCCCGATCCCCTTCTACGTGCTGTCGGT
65 GCCGACCGAAGAGGCAGAATACGCAAGCCAGGGATCGGCCCGAT-CCCTCCTACGTGCTATCGAT
*
15024733 CCCGCTACCACAACCCTCAGTTC-GGCTGGG
129 CCCGCTACCACAACCCTCAGTTCAGGCT-GA
* * * * **
15024763 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCATTCAG
* * * * * * * * * * **
15024828 TCGATCGAAAAGGTAGAATGCGCGAGCC-GAGGATCCGTCCGGTCCCCCCTACGTGCTGCCGATC
66 CCGACCGAAGAGGCAGAATACGCAAGCCAG-GGATCGGCCCGATCCCTCCTACGTGCTATCGATC
* *
15024892 CTGCTACCGCAACCCTC
130 CCGCTACCACAACCCTC
15024909 GGTCCGGTCC
Statistics
Matches: 242, Mismatches: 58, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 125 0.52
159 115 0.48
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCATTCAG
CCGACCGAAGAGGCAGAATACGCAAGCCAGGGATCGGCCCGATCCCTCCTACGTGCTATCGATCC
CGCTACCACAACCCTCAGTTCAGGCTGA
Found at i:15026144 original size:158 final size:157
Alignment explanation
Indices: 15025640--15026144 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 157
15025630 GTGGCTCAAA
* * ** * *
15025640 ATCTTAGACTGGGAATAAACTCCGCATGCCTAAGCCAACTCATGAAACGAGCGTACGGGCGTTCA
1 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * *
15025705 GTAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGGCTGGTCCTCCCTGCGTGCTGTCGATC
66 GCAGGCCGGAGAGGCAGAAT-CCCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATC
* *
15025770 CTGCTATCGCAACCCTCGGTCCGGTCCG
130 CTGCTACCGCAACCCTCGGTCTGGTCCG
* * * * * *
15025798 ATCTTAGAGTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * * * * * *
15025863 GCCGGTCGAAGATGCATAATGCCCAAGTCGAGGATCGGCCCGGTTCCCCCTCTGCGTGCTATCGG
66 GCAGGCCGGAGAGGCAGAAT-CCCAAGCCGGGGATCGG-CCTGATCCCCC-CTGCGTGCTGTCGA
* * * * * *
15025928 TCCCGCTGCCACAACCCTC--TATGCGGCTGG
128 TCCTGCTACCGCAACCCTCGGTCTG-GTC-CG
** * * * * * *
15025958 GGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCACTC
1 ATCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTC
* *
15026022 AGCAGGCCGGAGAGGTAGAATCCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCCGAT
65 AGCAGGCCGGAGAGGCAGAATCC-CAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGAT
15026087 CCTGCTACCGCAACCCTCGGTCTGGTCCG
129 CCTGCTACCGCAACCCTCGGTCTGGTCCG
15026116 ATCTTAGACTAGGAATGAAC-CCTATATGC
1 ATCTTAGACTAGGAATGAACTCC-ATATGC
15026145 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 71, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 2 0.01
158 133 0.50
159 23 0.09
160 108 0.41
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
GCAGGCCGGAGAGGCAGAATCCCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCGGTCTGGTCCG
Found at i:15026159 original size:26 final size:26
Alignment explanation
Indices: 15026118--15026170 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15026108 CTGGTCCGAT
15026118 CTTAGACTAGGAATGAACCCTATATG
1 CTTAGACTAGGAATGAACCCTATATG
* * * *
15026144 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACCCTATATG
15026170 C
1 C
15026171 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCTATATG
Found at i:15026856 original size:159 final size:158
Alignment explanation
Indices: 15026508--15026871 Score: 391
Period size: 158 Copynumber: 2.3 Consensus size: 158
15026498 AACTCTGTAT
* *
15026508 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* *
15026573 CCGACCAGAGAGGCAGAACGCACAAGCTGGGGATAGGCTCGAACCCCCCTGTGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAACGCACAAGCTGGGAATAGGCTCGAACCCCCCTGCGTGCTGTCGATCC
* * * *
15026638 TGCTGCAGCAACCCTCGGTCCAGTTCGA
131 CGCTACAGCAACACTCGGTCCAGCTCGA
* * * * * *
15026666 TCTTAGAC-TGGGAATGGACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCTCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * ** * *
15026730 GCCGACCAGAGAGGCATG-ATGCGCAAG-TCGGGAATCCG-TCCGATCCCCCTTTGCGTGCTGTC
65 GCCGACCAGAGAGGCA-GAACGCACAAGCT-GGGAATAGGCT-CGAACCCCC-CTGCGTGCTGTC
* * *
15026792 GGTCCCGCTAACA-CAACACTCGGTCC-GACTGGG
126 GATCCCGCT-ACAGCAACACTCGGTCCAG-CTCGA
*
15026825 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCACGAAAC
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACAAAAC
15026872 TGGANNNNNN
Statistics
Matches: 169, Mismatches: 28, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
157 3 0.02
158 92 0.54
159 69 0.41
160 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAACGCACAAGCTGGGAATAGGCTCGAACCCCCCTGCGTGCTGTCGATCC
CGCTACAGCAACACTCGGTCCAGCTCGA
Found at i:15028942 original size:24 final size:24
Alignment explanation
Indices: 15028914--15028993 Score: 160
Period size: 24 Copynumber: 3.3 Consensus size: 24
15028904 CCCTCATCCT
15028914 CATGGAACGGCTTAAGCATGCTCA
1 CATGGAACGGCTTAAGCATGCTCA
15028938 CATGGAACGGCTTAAGCATGCTCA
1 CATGGAACGGCTTAAGCATGCTCA
15028962 CATGGAACGGCTTAAGCATGCTCA
1 CATGGAACGGCTTAAGCATGCTCA
15028986 CATGGAAC
1 CATGGAAC
15028994 ACCGGGTGTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (24 bp):
CATGGAACGGCTTAAGCATGCTCA
Found at i:15032978 original size:158 final size:157
Alignment explanation
Indices: 15032511--15033012 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 157
15032501 CCCAGTTTAA
* *
15032511 GCATACGAAGTTCATTCCCAGTCTAAGAT-TAAACTGGACCGAGGGTTACGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCT-AACTGGACCGAGGGTTACGGTAGCAGGATCGAC
* * *
15032575 AGCACGCAGGGGGGACAAGGCCAAT-CCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCCGAGCA
65 AGCACGCAGGGGGGAC-AGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* * *
15032639 CCCGCACGTTCGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * ** ** *
15032669 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGTGGGA-CCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCTAACTGGACCGAGGGTTACGGTAGCAGGATCGA-
* * * * * * * * *
15032732 CAGAATGCAGAGGAGGACCGGGCCGATCCCCGGCTTGTGCATTAC-GCCTCTCCAACCGGCTCAA
64 CAGCACGCAG-GGGGGA-CAGGCCGATCCCTGGCTTGCGCATT-CTGCCTCTCCGACCGGCTGAG
* *
15032796 CACCCGCACGCTTGTTTCATGGGTTGACTTAG
126 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
15032828 GCATATGGAGTTCATTCCCAGACTAAGATCTGACTGAACCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTAACTGGACCGAGGGTTACGGTAGCAGGATCGACA
* * * *
15032893 GCACGCAGGGGGGATCAGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGACCGACTGAGCGCC
66 GCACGCAGGGGGGA-CAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
*
15032958 TGCACGCTCGTTTCGTGGGTT-AGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGA-CTTAG
* *
15032986 GCTTACGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15033013 CATACGGAGT
Statistics
Matches: 265, Mismatches: 67, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 10 0.04
158 135 0.51
159 111 0.42
160 9 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCTAACTGGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGGACAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15033018 original size:26 final size:26
Alignment explanation
Indices: 15032989--15033038 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15032979 AGCTTAGGCT
*
15032989 TACGGAGTTTATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
15033015 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15033039 ATCAAACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15033740 original size:158 final size:158
Alignment explanation
Indices: 15033446--15034189 Score: 648
Period size: 158 Copynumber: 4.7 Consensus size: 158
15033436 GCATGTAGGG
* *
15033446 GGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCTACACT-CT
1 GGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC-GCA-TGCT
* * * * *
15033510 CGTTTTATGGGTTGGCTTAGGTATAGAGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGG
64 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAGACCGAGG
* *
15033574 GTTGTGGCAGCAAGATCGGCAACACGCAGGA
129 GTTGTGGCAGC-GGATCGACAACACGCAGGA
* * * * *
15033605 GGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCTCGCATGCCCA
1 GGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCATGCTCA
* * ** *
15033670 TTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA-ACTGAGGGT
66 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAGACCGAGGGT
*
15033734 TGTGGCAGCGGGACCGACAACACGCA-GA
131 TGTGGCAGC-GGATCGACAACACGCAGGA
* * * * * * *
15033762 GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCATGCTC
1 -GGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCATGCTC
* * * ** * *
15033827 ATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCG-GACTGAG
65 ATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAGACCGAG
** * *
15033889 GGTTACGGCAGTCGGATCGACAGCACGCAGGG
128 GGTTGTGGCAG-CGGATCGACAACACGCAGGA
* ** * * ** *
15033921 GGGACC-GAGCTGATCCTTGACTTGTGCATTCTGCCTCTCCGACCGACTGAGTGCCCGTATGCTC
1 GGGACCAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCATGCTC
* * * * *
15033985 GTTTCGTAGGTTAGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTC-AGACCGAGGG
65 ATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAGACCGAGGG
* * *
15034049 TTGTGGCAGCGGGA-CTGGCAGCACGTA-GA
130 TTGTGGCAGC-GGATC-GACAACACGCAGGA
*** * * * * * * * ** *
15034078 GGGGATTGGGTCGATCCCTGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTC
1 -GGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCATGCTC
* * * *
15034143 ATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
65 ATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGC
15034190 ATACGAGTTC
Statistics
Matches: 476, Mismatches: 92, Indels: 35
0.79 0.15 0.06
Matches are distributed among these distances:
157 13 0.03
158 398 0.84
159 65 0.14
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCATGCTCA
TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAGACCGAGGGT
TGTGGCAGCGGATCGACAACACGCAGGA
Found at i:15033918 original size:316 final size:316
Alignment explanation
Indices: 15033453--15034190 Score: 878
Period size: 316 Copynumber: 2.3 Consensus size: 316
15033443 GGGGGGATCA
* * * * * * *
15033453 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCTACACT-CTCGTTTTA
1 GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCACCC-GCA-TGCTCATTTTA
* * * **
15033517 TGGGTTGGCTTAGGTATA-GAGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
64 TGGGTTGACTTAGGCATACG-GAGTTCATTCCCA-GTCTAAGCACCAGCCAGACCGAGGGTTACG
* *
15033580 GCAGCAAGATCGGCAACACGCAGGAGGGACC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
127 GCAGCAAGATCGACAACACGCAGGAGGGACCGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * * * * * **
15033644 CGATCGGCTGAGCGCTCGCATGCCCATTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATG
191 CGACCGACTGAGCGCCCGCATGCCCATTTCGTAGGTTAGCCTAGGCATACAGAGTTCATTCCATG
*
15033709 TCTAAGCCCCAGTC-GAACTGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGACCG
256 TCTAAGCCCCAGTCAG-ACCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGACCG
* *
15033770 GGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCATGCTCATTTCATG
1 GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCATGCTCATTTTATG
* * * *
15033835 GGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTGAGGGTTACGGCA
66 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAG-CCAGACCGAGGGTTACGGCA
* * * * ** *
15033899 GTC-GGATCGACAGCACGCAGGGGGGACCGAGCTGATCCTTGACTTGTGCATTCTGCCTCTCCGA
130 G-CAAGATCGACAACACGCAGGAGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGA
* * * *
15033963 CCGACTGAGTGCCCGTATGCTCGTTTCGTAGGTTAGCCTAGGCATACAGAGTTCATTCCATGTCT
194 CCGACTGAGCGCCCGCATGCCCATTTCGTAGGTTAGCCTAGGCATACAGAGTTCATTCCATGTCT
* * * * **
15034028 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGATTG
259 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGACCG
* * ** *
15034086 GGTCGATCCCTGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCATTTTATG
1 GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCATGCTCATTTTATG
*
15034151 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
66 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
15034191 TACGAGTTCA
Statistics
Matches: 357, Mismatches: 56, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
315 4 0.01
316 302 0.85
317 51 0.14
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (316 bp):
GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCATGCTCATTTTATG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGCCAGACCGAGGGTTACGGCAG
CAAGATCGACAACACGCAGGAGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACC
GACTGAGCGCCCGCATGCCCATTTCGTAGGTTAGCCTAGGCATACAGAGTTCATTCCATGTCTAA
GCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGACCG
Found at i:15034200 original size:25 final size:26
Alignment explanation
Indices: 15034162--15034213 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15034152 GTTGACTTAG
15034162 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15034188 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15034213 G
1 G
15034214 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15040485 original size:26 final size:25
Alignment explanation
Indices: 15040441--15040492 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15040431 GTTGACTTAG
15040441 GCATACGGATTCATCCCCAGTCTAA
1 GCATACGGATTCATCCCCAGTCTAA
*
15040466 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGA-TTCATCCCCAGTCTAA
15040492 G
1 G
15040493 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGGATTCATCCCCAGTCTAA
Found at i:15040995 original size:158 final size:159
Alignment explanation
Indices: 15040466--15041000 Score: 394
Period size: 158 Copynumber: 3.4 Consensus size: 159
15040456 CCCAGTCTAA
** ** * * * *
15040466 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAATCGGACCGAGGGTTGCGGCAACAGGATCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGGTCGGACTGAGGGTTGTGGCAGCAGGACCAGC
** * ** * * * * * * *
15040530 AGCATGCAG-GGGGGACTGGGCCGATCCTCGGCTTACGCATTCTACCT-TTCTGAC-CGGTTGAG
65 AGCACACAGAGGGAGACCAGGTCGATCCTCGACTTACGCATTATGCCTCCTC-G-CTCGGCTCAG
** * * *
15040592 TGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
15040624 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-GCCAGATTGAGGGTTGTGGTAG-TGAGACCAG
1 GCATACGGAGTTCATTCCATGTCTAAG-CCCAGGTCGGACTGAGGGTTGTGGCAGCAG-GACCAG
* *
15040687 CAGCACACAGAGGGAGACCGGGTCGATCCTCGACTTACGCATTATGCCTCCTCGGTCGGCTCAGC
64 CAGCACACAGAGGGAGACCAGGTCGATCCTCGACTTACGCATTATGCCTCCTCGCTCGGCTCAGC
* * * *
15040752 ACCCGTATGCTCGTTTCATGGGTTGACTTAT
129 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * **
15040783 GCATACGGAGTTCATTCC-TAGTCTGAGATCAGATCGGACCGAGGGTTATGGCAGCAGGA-TTGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAGGTCGGACTGAGGGTTGTGGCAGCAGGACCAG-
* * * * *
15040846 TAGCACACAG-GGGGGACCAGGTCGATCCTC-AGCTTGCGCATTCTGCCT-CTCCAGCT-GGCTG
64 CAGCACACAGAGGGAGACCAGGTCGATCCTCGA-CTTACGCATTATGCCTCCT-C-GCTCGGCTC
15040907 AGCGA-CCGCACGCTCGTTTCATGGGTTGGCTTAG
126 AGC-ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
15040941 GCATACGGAGTTCATTCCATGTGTAAGCCCTGGTCGGAGTGACGGTTGTGGCAGCAGGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAGGTCGGACTGAGGGTTGTGGCAGCAGGAC
15041001 TGGTAGCGGG
Statistics
Matches: 292, Mismatches: 69, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.02
158 165 0.57
159 117 0.40
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGGTCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
GCACACAGAGGGAGACCAGGTCGATCCTCGACTTACGCATTATGCCTCCTCGCTCGGCTCAGCAC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15041339 original size:26 final size:26
Alignment explanation
Indices: 15041309--15041360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15041299 GTTGGCTTAG
*
15041309 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15041335 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15041361 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15042075 original size:26 final size:26
Alignment explanation
Indices: 15042045--15042097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15042035 GTTGACTTAG
15042045 GCATAAGGAGTTCATCCCTAGTCTAA
1 GCATAAGGAGTTCATCCCTAGTCTAA
* *
15042071 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCTAGTCTAA
15042097 G
1 G
15042098 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCTAGTCTAA
Found at i:15042448 original size:159 final size:158
Alignment explanation
Indices: 15042152--15042572 Score: 380
Period size: 159 Copynumber: 2.7 Consensus size: 158
15042142 AGGGGGGACT
* * * * * * ** ** * *
15042152 GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGATTTAGTGCCCTTACGCCCGTTTCGT
1 GGGTCGACCCCCGGCTTGCGCATTATGCTTCTCCAGCCGACTCAACGCCCGAACGCTCATTTCGT
* * ** * * * * *
15042217 GGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCTTTAGCCGGACTGAGGGTTGTGGCA
66 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACCGAGGGTTGCGACA
* ** *
15042282 GCGGGATCGGTAGCACGTAAAG-GGAGATT
131 GCAGGATCGACAGCACG-AAAGCGG-GATC
* * * * * *
15042311 GGGTCGATCCTCGGCTTGTGCATTATGCCTT-TTCGGCCGGCTCAACGCCCGAACGCTCATTTCG
1 GGGTCGACCCCCGGCTTGCGCATTATG-CTTCTCCAGCCGACTCAACGCCCGAACGCTCATTTCG
* * *
15042375 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTAGACCGAGTGTTGCGA
65 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGACCGAGGGTTGCGA
* * *
15042439 TAGCAGGATCGACAGCATGCAAGCGGGATC
129 CAGCAGGATCGACAGCACGAAAGCGGGATC
* * * * * *
15042469 GGGTCGGCCCCCGGCTTGCGCATTCTGCTTCTCCAGCCGACTGAGCGCCCGCACGCTCGTTTCGT
1 GGGTCGACCCCCGGCTTGCGCATTATGCTTCTCCAGCCGACTCAACGCCCGAACGCTCATTTCGT
* *
15042534 GGGTTGGCTTGGGCATACGAAGTTCATTCCATGTCTAAG
66 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15042573 CCCCAGTCGG
Statistics
Matches: 207, Mismatches: 50, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
157 6 0.03
158 87 0.42
159 109 0.53
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (158 bp):
GGGTCGACCCCCGGCTTGCGCATTATGCTTCTCCAGCCGACTCAACGCCCGAACGCTCATTTCGT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACCGAGGGTTGCGACA
GCAGGATCGACAGCACGAAAGCGGGATC
Found at i:15042549 original size:158 final size:157
Alignment explanation
Indices: 15042071--15042572 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 157
15042061 CCTAGTCTAA
** * *
15042071 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACTGGATCGAGGGTTGTGGTAGTAGGATC-AG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGA-
* * * * * * *
15042134 CAGAATGCAGGGGGGA-CTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGATTTAGT
64 CAGCATGCA-AGGGGATC-GGGTCGATCCCCGGCTTGCGCATTCTGCTTCTCCAGCCGACTCAGC
** *
15042198 GCCCTTACGCCCGTTTCGTGGGTTGGCTTAG
127 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * **
15042229 GCATACGGAGCTCATTCCATGTCTAAGCTTTAGCCGGACTGAGGGTTGTGGCAGCGGGATCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * * * * * * *
15042294 GCACGTAAAGGGAGATTGGGTCGATCCTCGGCTTGTGCATTATGCCTT-TTCGGCCGGCTCAACG
66 GCATG-CAAGGG-GATCGGGTCGATCCCCGGCTTGCGCATTCTG-CTTCTCCAGCCGACTCAGCG
* *
15042358 CCCGAACGCTCATTTCGTGGGTTGACTTAG
128 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15042388 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTAGACCGAGTGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGAC
** *
15042452 AGCATGCAAGCGGGATCGGGTCGGCCCCCGGCTTGCGCATTCTGCTTCTCCAGCCGACTGAGCGC
65 AGCATGCAAG-GGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCTTCTCCAGCCGACTCAGCGC
* *
15042517 CCGCACGCTCGTTTCGTGGGTTGGCTTGG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
15042546 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15042573 CCCCAGTCGG
Statistics
Matches: 265, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 141 0.53
159 113 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGCAGGATCGACA
GCATGCAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCTTCTCCAGCCGACTCAGCGCCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15044323 original size:26 final size:26
Alignment explanation
Indices: 15044294--15044346 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15044284 GTTGACTTAG
*
15044294 GCATACAG-AGTTTATCCCCAGTCTAA
1 GCATAC-GTAGTTCATCCCCAGTCTAA
*
15044320 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGTAGTTCATCCCCAGTCTAA
15044346 G
1 G
15044347 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGTAGTTCATCCCCAGTCTAA
Found at i:15044847 original size:26 final size:26
Alignment explanation
Indices: 15044795--15044847 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15044785 GTTGGCTTAG
*
15044795 GCATACAGAGTTCATTCCAGGTATAA
1 GCATACAGAGTTCATTCCACGTATAA
* * *
15044821 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCACGTATAA
15044847 G
1 G
15044848 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTATAA
Found at i:15046289 original size:26 final size:26
Alignment explanation
Indices: 15046253--15046305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15046243 GTTGACTTTG
*
15046253 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
*
15046279 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
15046305 G
1 G
15046306 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:15046986 original size:26 final size:26
Alignment explanation
Indices: 15046938--15046990 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15046928 GTTGACTTAG
*
15046938 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
*
15046964 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCT-CCAGTCTAA
15046990 G
1 G
15046991 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:15047834 original size:26 final size:26
Alignment explanation
Indices: 15047805--15047857 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15047795 GTTGACTTAG
*
15047805 GCATACAGAGTTTATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
15047831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15047857 G
1 G
15047858 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15048547 original size:26 final size:26
Alignment explanation
Indices: 15048516--15048568 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15048506 GTTGGCTTAG
15048516 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15048542 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15048568 G
1 G
15048569 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15049254 original size:342 final size:348
Alignment explanation
Indices: 15048466--15049264 Score: 868
Period size: 342 Copynumber: 2.3 Consensus size: 348
15048456 CTCCGATCGG
* * * * * * *
15048466 CCTCTCTGATCGGCTGAGCACCC-ATATGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCA
1 CCTCTCCGATCGGCTCAGCGCCCGA-ACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
*
15048530 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGTA
65 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTT---GTA
15048595 GCGGGACCAGAAGCAGGATCGACAGCACGCAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCT
127 GCGGGA-C--AAGCAGGATCGACAGCACGCAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCT
* * *
15048660 ACCTCTCTAGCCGGTTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
189 ACCTCTCCAGCCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* * * * *
15048725 TTCCATATCTAAGCCCCAGTCGGACCCAGGGTTGTGGTAGTGGGATCGACAGCACACAGAGAGGG
254 TTCCATATCTAAGCCCCAGTCAGACCCAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAAGGG
* *** * *
15048790 ATCGGGCCGATCCTTGGTTTACGCATTATG
319 ATCGGGCCAATCCCCAGCTTACGCATTATA
* * **
15048820 CCTCTCCGGTCGGCTCAGCGCTCGAACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCA-
1 CCTCTCCGATCGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
* * * *
15048884 TCCCTAGTCTAACCATACGAAGTTCATTCCCAATCTAAGATTGGATCAGACCGAGGG-T-T-GC-
66 TCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTAGCG
* * * * * *
15048945 GG-C-AGTAGGATCGACAGCACGTAGGGGGGACC-GAGTCGATCCTC-GACTTGTGCATTCTGCC
130 GGACAAGCAGGATCGACAGCACGCA-GGGGGACCAG-GCCGATCCCCAG-CTTGCGCATTCTACC
* * * ** *
15049006 TCTCCGGTCGGCTGAGCGCCCGTATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
192 TCTCCAGCCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * ** *
15049071 CATTTCTAAGCCTCAGTCAGACCGA-GGTTGTGGCAGCGGGACCGGTAGTACACAGAAAGGGA-C
257 CATATCTAAGCCCCAGTCAGACCCAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAAGGGATC
* ** *
15049134 TGGTCCAATCCCCAGCTTGTGCATTCTA
322 -GGGCCAATCCCCAGCTTACGCATTATA
* * * * * *
15049162 CCTCTCCGATCGGTTGAGCGCCCGTACGTTCATTTTGTGGTTTGGCTTAGGCATACAGAGTTCAT
1 CCTCTCCGATCGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
*
15049227 TCCATTTCTAAGCATACGGAGTTCATT-CCAGTCTAAGA
66 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
15049265 GTTTGAGCCA
Statistics
Matches: 371, Mismatches: 67, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
341 11 0.03
342 140 0.38
343 110 0.30
345 1 0.00
347 2 0.01
348 2 0.01
349 1 0.00
353 5 0.01
354 98 0.26
355 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (348 bp):
CCTCTCCGATCGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTAGCGG
GACAAGCAGGATCGACAGCACGCAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTC
CAGCCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATA
TCTAAGCCCCAGTCAGACCCAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAAGGGATCGGGC
CAATCCCCAGCTTACGCATTATA
Found at i:15049965 original size:26 final size:26
Alignment explanation
Indices: 15049929--15049979 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15049919 TGACTTAGAC
* *
15049929 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAATCTAAGT
*
15049955 ATACGAAGTTCATTCCCAATCTAAG
1 ATACGAAGTTCATCCCCAATCTAAG
15049980 ATCGAACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGT
Found at i:15050316 original size:26 final size:26
Alignment explanation
Indices: 15050279--15050329 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15050269 TTTAACTTAG
*
15050279 GCATACATAGTTCA-TCCCTAGTCTAT
1 GCATACAAAGTTCATTCCC-AGTCTAT
15050305 GCATACAAAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATTCCCAGTCTA
15050330 AGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.31
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAT
Found at i:15051093 original size:159 final size:159
Alignment explanation
Indices: 15050838--15051240 Score: 416
Period size: 159 Copynumber: 2.5 Consensus size: 159
15050828 CGCAAGCCCG
* * * * * * ** *
15050838 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
1 TTTCATGGATTGACTTAGGCATACGGAGTTCATTCAATGTCTAAGCACCAGCCAAACCGAGGGTT
* * * *
15050903 GTGGCAGCGGGACCGACAGCATGTAGAGGGGGACCAGGTC-GATCCCCAACTTGCGCATTATGCC
66 GTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCAG-TCCCCAACTTACGCATTATGCC
* * * * *
15050967 TCTTCAATAGGCTCAGCACCTGCACGCTCG
130 TCTCCAACAGACTCAGCACCCGCACGCTCA
* * *
15050997 TTTCATGGATTGACTTTGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACCGAGGG
1 TTTCATGGATTGACTTAGGCATACGGAGTTCATT-CAATGTCTAAGCACCAG-CCAAACCGAGGG
* * * *** *
15051060 TTGTGACAGCAGGATCGACAGCACGCAGGGGGGGACCAGGTCAGTCCCTGGCTTACGCATTCTGC
64 TTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCAGTCCCCAACTTACGCATTATGC
* * *
15051125 CTCTCCGACCGACTGAGCACCCGCACGCTCA
129 CTCTCCAACAGACTCAGCACCCGCACGCTCA
** * * * *
15051156 TTTGGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCGAGGGTT
1 TTTCATGGATTGACTTAGGCATACGGAGTTCATTCAATGTCTAAGCACCAGCCAAACCGAGGGTT
*
15051221 GTGGCAGCAGGACCGGCAGC
66 GTGGCAGCAGGACCGACAGC
15051241 GGGATCGACA
Statistics
Matches: 198, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 5 0.03
159 186 0.94
160 7 0.04
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
TTTCATGGATTGACTTAGGCATACGGAGTTCATTCAATGTCTAAGCACCAGCCAAACCGAGGGTT
GTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGTCAGTCCCCAACTTACGCATTATGCCT
CTCCAACAGACTCAGCACCCGCACGCTCA
Found at i:15051601 original size:26 final size:26
Alignment explanation
Indices: 15051572--15051624 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15051562 GTTAAGATAG
*
15051572 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15051598 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15051624 G
1 G
15051625 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15051958 original size:159 final size:157
Alignment explanation
Indices: 15051598--15052030 Score: 385
Period size: 159 Copynumber: 2.7 Consensus size: 157
15051588 CCCAGTCTAA
* * * * * **
15051598 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGTAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGTAGCAAGACCGACA
* * * *
15051663 GCATGCAGGGGGACCGGGCAGATCCCCAGCTTGCGTATTCTGCCTCTCCGACCGGCTGAGCACTC
66 GCATGCAGGGGGACCAGGCAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCACTC
* *
15051728 GCACACCCGTTTCGTGGGTTGGCTTAG
131 GCACACCCATTTCGTGGGTTGACTTAG
* * ** **
15051755 GCGTAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACAGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACAGAGGGTTGTGGTAGCAAGACCGA
* * ** * *
15051818 CAGCACGTAG-AGGGGGATCAGGCTGATCTTCGGCTTACGCATTTTGCCTCTCCGACCGGCTCAG
64 CAGCA--T-GCAGGGGGACCAGGCAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTCAG
* * *
15051882 CTC-CTGCACGCTCATTTCGTGGGTTGACTTAG
126 CACTC-GCACACCCATTTCGTGGGTTGACTTAG
* * * *
15051914 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCC-AC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGTAGCAAGA-CCGAC
* * * * *
15051978 ATCACGCAGGGGAGGAACAGGCCAG-T-CCCTGACTTATGCATTCTGCCTCTCCG
65 AGCATGCA-GGG-GGACCAGG-CAGATCCCCAG-CTTACGCATTCTGCCTCTCCG
15052031 GTCGATTGAA
Statistics
Matches: 218, Mismatches: 44, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
156 4 0.02
157 50 0.23
158 10 0.05
159 146 0.67
160 8 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGTAGCAAGACCGACA
GCATGCAGGGGGACCAGGCAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTCAGCACTC
GCACACCCATTTCGTGGGTTGACTTAG
Found at i:15052127 original size:26 final size:26
Alignment explanation
Indices: 15052077--15052129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15052067 GTTGGCTTAG
* *
15052077 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
15052103 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15052129 G
1 G
15052130 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15052465 original size:26 final size:26
Alignment explanation
Indices: 15052435--15052487 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15052425 GTTGACTTAG
15052435 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15052461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15052487 G
1 G
15052488 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15053692 original size:26 final size:26
Alignment explanation
Indices: 15053662--15053713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15053652 TTGGCTTAGC
*
15053662 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
15053688 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
15053714 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:15054420 original size:26 final size:26
Alignment explanation
Indices: 15054384--15054436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15054374 GTTGACTTAG
15054384 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15054410 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15054436 G
1 G
15054437 ATCGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15054700 original size:159 final size:158
Alignment explanation
Indices: 15054450--15054754 Score: 432
Period size: 159 Copynumber: 1.9 Consensus size: 158
15054440 GGATGGGACC
* * * *
15054450 GAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGATTGGGCCGATCCCCGCCTTGCGCATT
1 GAGGGTTGCAGCAGCAGGACCGACAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
* * * *
15054515 CTGCCTCTCCGGCCGGCTGAGTGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGTGT
66 CTGCCTCTACGGCCGGCTGAGAGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
15054579 TCATTCCATGTCTAAGCCCCAGCCGGATT
130 TCATCCCATGTCTAAGCCCCAGCCGGATT
** * * * *
15054608 GAGGGTTGTGGCAGCGGGACCGACAGCACATAGAGGGGGATCGGGTCGATCCCCGACTTTCGCAT
1 GAGGGTTGCAGCAGCAGGACCGACAGCACACAG-GGGGGATCGGGCCGATCCCCGACTTGCGCAT
* *
15054673 TCTGCCTTTACGGCCGGCTGGGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTACGGCCGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
15054738 TCATCCCATGTCTAAGC
130 TCATCCCATGTCTAAGC
15054755 ATACGGAGTT
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
158 27 0.21
159 100 0.78
160 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.34, T:0.22
Consensus pattern (158 bp):
GAGGGTTGCAGCAGCAGGACCGACAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATT
CTGCCTCTACGGCCGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATCCCATGTCTAAGCCCCAGCCGGATT
Found at i:15054763 original size:26 final size:26
Alignment explanation
Indices: 15054727--15054779 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15054717 GTTGGCTTAG
15054727 GCATACGGAGTTCA-TCCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15054753 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15054779 G
1 G
15054780 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15055479 original size:25 final size:26
Alignment explanation
Indices: 15055432--15055483 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15055422 GTTGACTTTG
15055432 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15055458 GCATACGGAG-TCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15055483 G
1 G
15055484 ATCGCATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15056942 original size:159 final size:160
Alignment explanation
Indices: 15056779--15057151 Score: 441
Period size: 159 Copynumber: 2.3 Consensus size: 160
15056769 TGAGCGCCTA
* * * *
15056779 CACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGACCAGA
* *
15056843 CCGAGGGTTGTGGCAGC-GACATCGACAGCACGTAGAGGGGGATCGGGCCGAT-CCTCGACTTAC
66 CCGAGGGTTGTGGCAGCAG-CATCGACAACACGTAGAGGGGGACCGGGCCGATGCC-CGACTTAC
* * *
15056906 GCATTATGCCTCTCCGGTCAGCTCAGCGCCCG
129 ACATTATGCATCTCCGGTCAGCTAAGCGCCCG
* * * *
15056938 CACGCTCGTTTCGTGGTTTGACTTAGGCATATGGAGTTCATTCC-TAGTCTAAG-ATCGGACTAG
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAT-GTCTAAGCACCAGACCAG
* * * *
15057001 ACCGAGGGTTGTGGTAGCAGGATCGACAACACGTAGAGGGGGACCGGGCTGGTGCCCGACTTACA
65 ACCGAGGGTTGTGGCAGCAGCATCGACAACACGTAGAGGGGGACCGGGCCGATGCCCGACTTACA
* * * * * *
15057066 CATTCTGTATTTCCGGTCGGTTAAGCGCCTG
130 CATTATGCATCTCCGGTCAGCTAAGCGCCCG
* ** *
15057097 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCACGTCTAAGCA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
15057152 TACGGAGTTC
Statistics
Matches: 180, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
158 3 0.02
159 173 0.96
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (160 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGACCAGA
CCGAGGGTTGTGGCAGCAGCATCGACAACACGTAGAGGGGGACCGGGCCGATGCCCGACTTACAC
ATTATGCATCTCCGGTCAGCTAAGCGCCCG
Found at i:15057153 original size:26 final size:26
Alignment explanation
Indices: 15057123--15057175 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15057113 GTTGACTTAG
15057123 GCATACAGAGTTCATTC-CACGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
15057149 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
15057175 G
1 G
15057176 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:15057848 original size:26 final size:26
Alignment explanation
Indices: 15057819--15057871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15057809 GTTGGCTTAG
*
15057819 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
15057845 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15057871 G
1 G
15057872 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15058020 original size:697 final size:697
Alignment explanation
Indices: 15056761--15058043 Score: 1600
Period size: 697 Copynumber: 1.8 Consensus size: 697
15056751 TCTTCCTCTT
* * * * * *
15056761 CAGTCGACTGAGCGCCTACACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATG
1 CAGTCGACTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATG
* *
15056826 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGACATCGACAGCACGTAGAGGGGGATCGGGC
66 TCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCGACATCGACAGCACGTAAAGGGGGATCGGGC
* * * * *
15056891 CGATCCTCGACTTACGCATTATGCCTCTCCGGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGTT
131 CGATCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCGTTTCATGGGT
* * ** **
15056956 TGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGTGGTAGCAG
196 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGTTAAGGTAGCAG
* * * * ** * *
15057021 GATCGACAACACGTAGAGGGGGACCGGGCTGGTGCCCGACTTACACATTCTGTATTTCCGGTCGG
261 GATCGACAACACGCAGAGGGGGACCGGGCTGATCCCCGACTTACACATTCTATAGCTCCGCTCGC
* * **
15057086 TTAAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCACGTCTAAGC
326 CTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCACGTCTAAGC
* *
15057151 ATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGACCAATAGC
391 ATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAATAGC
* *** * * *
15057216 AGGATCGATAGCACACAGGGGGGACTGGGCCGATCCCTAGCTTGCGCATTTTGCCTCTCCAGCCG
456 AGGATCGACAGCACACAGGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCAGCCG
* * * * * * * * *
15057281 GTTGGGCGCCCGTACGCTCATTTTATTGGTTGGCTTAGGCATATGGAGTTCATTCCTTGTCTAAG
521 GCTGAGCGCCCG-ACGCTCATTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCTAGTCTAAG
15057346 CCCCAGCCGGACTGAGGGTTGTGCTAGCAGGACCGACAGCGGGATTGGTAGCACGTAGAGGAGGA
585 CCCCAGCCGGACTGAGGGTTGTGCTAGCAGGACCGACAGCGGGATTGGTAGCACGTAGAGGAGGA
15057411 CCGGGCTGATCCCTGGCTTGCGGATTATGCCTCTCTGACTGGCCTTTC
650 CCGGGCTGATCCCTGGCTTGCGGATTATGCCTCTCTGACTGGCCTTTC
*
15057459 CAGTCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATG
1 CAGTCGACTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATG
* * * * **
15057524 TCTAAG-CCCAGTCGGACTGAGTGTTATGGCAGTGGGATCGACAGCAC-TCAAAGGGGGATCGGG
66 TCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCGACATCGACAGCACGT-AAAGGGGGATCGGG
** * * * * *
15057587 TTGATCCCC-AGCTTGCGCATTATGCCTCTCTGGCCGGCTCAACGCCCGGACGCTTGTTTCATGG
130 CCGATCCCCGA-CTTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCGTTTCATGG
15057651 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAA-TCAGACCGAGGGTTAAGGTAG
194 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT-AGACCGAGGGTTAAGGTAG
* * * * *
15057715 CAGGATCGACAGCATGCAG-GGGGGACTGGG-TCGATCCCC-AGCTTACGCATTCTATCGCTCCG
258 CAGGATCGACAACACGCAGAGGGGGACCGGGCT-GATCCCCGA-CTTACACATTCTATAGCTCCG
* * * * * * *
15057777 ACT-GCCTGAGCACCCATAGGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
321 -CTCGCCTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCACGT
*
15057841 CTAAGCATACAGAGTTCATTC-CTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA-CTAGGA
385 CTAAGCATACAGAGTTCATTCTC-AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC-AGGA
* * * ** *
15057904 CCAGTAGCAGGATTGGCAGCATGCAGGCGGGGACCAAGCCGATCCCCGGCTTGCGCATTCTCCCT
448 CCAATAGCAGGATCGACAGCACACAGG-GGGGACCAAGCCGATCCCCAGCTTGCGCATTCTCCCT
* * *
15057969 CT-CTGATCGGCTGAGCGCCC-ACAGTTTCATTTCATGGGTTGACTGAGGCATACGGAGTTCATC
512 CTCCAG-CCGGCTGAGCGCCCGAC-G-CTCATTTCATGGGTTGACTGAGGCATACGGAGTTCATC
15058032 CCTAGTCTAAGC
574 CCTAGTCTAAGC
15058044 ATACAGAGTT
Statistics
Matches: 488, Mismatches: 85, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
695 6 0.01
696 163 0.33
697 255 0.52
698 64 0.13
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (697 bp):
CAGTCGACTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATG
TCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCGACATCGACAGCACGTAAAGGGGGATCGGGC
CGATCCCCGACTTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGGTTAAGGTAGCAG
GATCGACAACACGCAGAGGGGGACCGGGCTGATCCCCGACTTACACATTCTATAGCTCCGCTCGC
CTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCACGTCTAAGC
ATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCAATAGC
AGGATCGACAGCACACAGGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCAGCCG
GCTGAGCGCCCGACGCTCATTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCTAGTCTAAGC
CCCAGCCGGACTGAGGGTTGTGCTAGCAGGACCGACAGCGGGATTGGTAGCACGTAGAGGAGGAC
CGGGCTGATCCCTGGCTTGCGGATTATGCCTCTCTGACTGGCCTTTC
Found at i:15058046 original size:26 final size:26
Alignment explanation
Indices: 15058016--15058068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15058006 GTTGACTGAG
*
15058016 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15058042 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15058068 G
1 G
15058069 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15058503 original size:11 final size:11
Alignment explanation
Indices: 15058489--15058524 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
15058479 ACCATCGTCA
15058489 GAGCATCGCCG
1 GAGCATCGCCG
15058500 GAGCATCGCCG
1 GAGCATCGCCG
* *
15058511 GAGTATCACCG
1 GAGCATCGCCG
15058522 GAG
1 GAG
15058525 AGCCTAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.36, T:0.11
Consensus pattern (11 bp):
GAGCATCGCCG
Found at i:15059132 original size:26 final size:26
Alignment explanation
Indices: 15059103--15059155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15059093 GTTGCCTTAG
* *
15059103 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15059129 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15059155 G
1 G
15059156 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Done.