Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 118 of 402
Found at i:15059325 original size:26 final size:26
Alignment explanation
Indices: 15059289--15059339 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15059279 TGGCTTAGGT
15059289 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTACCA-GTCTAAGC
15059315 ATACGGAGTTCATTACCAGTCTAAG
1 ATACGGAGTTCATTACCAGTCTAAG
15059340 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTACCAGTCTAAGC
Found at i:15061236 original size:26 final size:26
Alignment explanation
Indices: 15061206--15061256 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15061196 TTCACTTAGG
*
15061206 CATACAAAGTTGATCCCCAGTCTAAT
1 CATACAAAGTTCATCCCCAGTCTAAT
* *
15061232 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAAAGTTCATCCCCAGTCTAA
15061257 GATTTGACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAAAGTTCATCCCCAGTCTAAT
Found at i:15061755 original size:26 final size:26
Alignment explanation
Indices: 15061706--15061756 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15061696 GTTGTTTCAT
* *
15061706 CATACGGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATATCTAAG
15061732 CATACAGAGTTCATTCCGA-ATCTAA
1 CATACAGAGTTCATTCC-ATATCTAA
15061757 AATTGGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAG
Found at i:15061961 original size:26 final size:26
Alignment explanation
Indices: 15061914--15061966 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15061904 GTTGACTTAG
*
15061914 GCATACAAAGTTCATCCCCAGTATAA
1 GCATACAAAGTTCATCCACAGTATAA
* * *
15061940 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACAAAGTTCATCCACAGTATAA
15061966 G
1 G
15061967 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCACAGTATAA
Found at i:15062400 original size:159 final size:159
Alignment explanation
Indices: 15062071--15062415 Score: 386
Period size: 159 Copynumber: 2.2 Consensus size: 159
15062061 CTGAGTGCCT
* * * * * * *
15062071 GCACGTCCATTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAGGCCCCAACCGGA
1 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATGCCATGTCTAAGCCCCAACCAGA
* * * *
15062136 CCAAGGGTTATGGCAGCAGGACCGACAGCACACAGAAGGTGATCGGGCTGATCCCTAGCTAGAGC
66 CCAAGGGTTATGGCAGCAGGACCGACAGCACACAGAAGGGGACCGAGCTGATCCCCAGCTAGAGC
* *
15062201 ATTATGCCTTTCCAGCTGGCTGAGCACCC
131 ATTATGCCTTTCCAGCCGGCTCAGCACCC
* * **
15062230 GTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATGCCATGTCTAAGCCCCAGTCAGA
1 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATGCCATGTCTAAGCCCCAACCAGA
* * ** * *
15062295 CCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCAGCTTGCA-
66 CCAAGGGTTATGGCAGCAGGACCGACAGCACACAGAAGGGGACCGAGCTGATCCCCAGCTAG-AG
* *** * *
15062359 CATTGTGCCTTTTTGGCCGGTTCAGCGCCC
130 CATTATGCCTTTCCAGCCGGCTCAGCACCC
* * *
15062389 GCACGCTCGTTTCATGGGTTGACTTAG
1 GCACGCCCGTTTCGTGGGTTGGCTTAG
15062416 ATGTACAAAG
Statistics
Matches: 151, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
159 150 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATGCCATGTCTAAGCCCCAACCAGA
CCAAGGGTTATGGCAGCAGGACCGACAGCACACAGAAGGGGACCGAGCTGATCCCCAGCTAGAGC
ATTATGCCTTTCCAGCCGGCTCAGCACCC
Found at i:15062795 original size:26 final size:26
Alignment explanation
Indices: 15062759--15062811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15062749 GTTGACTTAC
* *
15062759 GCATACGGAGTTCCTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15062785 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15062811 G
1 G
15062812 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15063309 original size:26 final size:26
Alignment explanation
Indices: 15063260--15063312 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15063250 GTTGGCTTAG
*
15063260 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTACATGTCTAA
*
15063286 GCATATGGAGTTCATTAACA-GTCTAA
1 GCATACGGAGTTCATT-ACATGTCTAA
15063312 G
1 G
15063313 ATCATACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACATGTCTAA
Found at i:15063662 original size:159 final size:159
Alignment explanation
Indices: 15063423--15063964 Score: 431
Period size: 159 Copynumber: 3.4 Consensus size: 159
15063413 CGGTTGGCTG
* * * *
15063423 AGCACCCGCACGCTCGTTTCATGGGTT-AGCTTAGGCATAGGGAGTTAATTCCATGTCTAAG-CC
1 AGCACCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACGAAGTTCATTCCATGTCTAAGATC
** * * * ** * * * *
15063486 CCAGCTAGA-CTGAGGGTTATGGCAGTGGGA-CTGGCAGCACGCAGAGGGGG-ACCGGGCTGATC
65 GGATC-AGATC-GAGGGTTACGACAGCAGGATC-GACAGCACACAG-GGGGGCACCAGGCCGATC
15063548 CCCAGCTTGCGCATTATGCCTCTCCGATCGACTC
126 CCCAGCTTGCGCATTATGCCTCTCCGATCGACTC
** * *
15063582 AGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATC
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGATC
* * *
15063646 GGATCAGATCGAGGGTTGCGACTGCAGGATCGATAGCACACAGGGGGGCACCAGGCCGATCCCCA
65 GGATCAGATCGAGGGTTACGACAGCAGGATCGACAGCACACAGGGGGGCACCAGGCCGATCCCCA
* *
15063711 GCTTGCGCATTCTGCCTCTCCGATCGACTG
130 GCTTGCGCATTATGCCTCTCCGATCGACTC
* * *
15063741 AGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
1 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG-AT-
* ** * * * * ** * * *
15063806 TGGAGTTCATTTCTAGTAGG--ACCAGTAGCAAGATCGGTAGCACGCAGGGGGG-ACCGGGCCTA
64 CGGA--TCAGATCGAG--GGTTACGA-CAGCAGGATCGACAGCACACAGGGGGGCACCAGGCCGA
** * * * * *
15063868 TCCCTGGCTTGCGCATTCTACCTCTCCG-GCTGGCTG
124 TCCCCAGCTTGCGCATTATGCCTCTCCGATC-GACTC
* * *
15063904 AGCGA-CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAG
1 AGC-ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
15063965 CCCCAGCCGG
Statistics
Matches: 316, Mismatches: 51, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
158 8 0.03
159 165 0.52
160 11 0.03
161 3 0.01
162 1 0.00
163 103 0.33
164 23 0.07
165 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCG
GATCAGATCGAGGGTTACGACAGCAGGATCGACAGCACACAGGGGGGCACCAGGCCGATCCCCAG
CTTGCGCATTATGCCTCTCCGATCGACTC
Found at i:15064672 original size:26 final size:26
Alignment explanation
Indices: 15064623--15064675 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15064613 GTTGGCTTAG
*
15064623 GCATACAGAGTTCATTTCACGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
*
15064649 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCATTCCAC-GTCTAA
15064675 G
1 G
15064676 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:15065652 original size:26 final size:26
Alignment explanation
Indices: 15065616--15065668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15065606 GTTGACTTAG
*
15065616 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15065642 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15065668 G
1 G
15065669 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15066998 original size:356 final size:356
Alignment explanation
Indices: 15066328--15067004 Score: 822
Period size: 356 Copynumber: 1.9 Consensus size: 356
15066318 GTGCTCGCAC
* * * * *
15066328 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCGAGTCTTAGTATATGGAGTTCATT
1 GCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * *
15066393 CCCAATCTATGATCGGAATGGACTGAGGGTTACGGTAGCAGGATTGGCAGCACACAGGGGAGACC
66 CCCAATCTAAGATCGAAATGGACTCAGGGTTACGGCAGCAGGATCGACAACACACAGGGGAGACC
* * * * * * * **
15066458 GACCCGATCCCCAGCTTGCACATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCTGTTTCAT
131 GACCCGATCCCCAGCTTACACATTCCGCCTCTCCGACCGACAGAGCGCCCGAACCCCCATTTCAT
* * *
15066523 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCA
196 GGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTAGTGGCA
** * * * * * * *
15066588 GCGGGATCGACAGCACGCAAAAGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGA
261 GCCAGACCGACAGCACGCAAAAGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTACCTCTTCGA
15066653 TCGACCTCTTCGACCGACTGAGCGCCTACAT
326 TCGACCTCTTCGACCGACTGAGCGCCTACAT
* ** *
15066684 GCTCGTTTCATAGGTTGGCTTAGGCATGTGGAGTTCATCCCCAGTCTAAGCATACGGTGTTCATT
1 GCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* ** *
15066749 CCCAGTCTAAGATC-AAATCGGAC-CACGGGTTACGGCAGCAGGATCGACAACACGTAGGGGGGA
66 CCCAATCTAAGATCGAAAT-GGACTCA-GGGTTACGGCAGCAGGATCGACAACACACAGGGGAGA
* * * * *
15066812 CCGGGCCTG-TCCCC-GTTTTACGCATTCCGCCTCTCCGACCGACAGAGTGCCCGAACCCCCATT
129 CC-GACCCGATCCCCAG-CTTACACATTCCGCCTCTCCGACCGACAGAGCGCCCGAACCCCCATT
* *
15066875 TTATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGTGTAGT
192 TCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTAGT
* * * *
15066940 GGCAGCCAGACCGGCAGCACGCAGAGGGGGACCGGGCCAATCCTCAGCTTGCGCATTCTACCTCT
257 GGCAGCCAGACCGACAGCACGCAAAAGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTACCTCT
15067005 CCGGCAAGCT
Statistics
Matches: 265, Mismatches: 52, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
355 5 0.02
356 256 0.97
357 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (356 bp):
GCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAATCTAAGATCGAAATGGACTCAGGGTTACGGCAGCAGGATCGACAACACACAGGGGAGACC
GACCCGATCCCCAGCTTACACATTCCGCCTCTCCGACCGACAGAGCGCCCGAACCCCCATTTCAT
GGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTAGTGGCA
GCCAGACCGACAGCACGCAAAAGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTACCTCTTCGA
TCGACCTCTTCGACCGACTGAGCGCCTACAT
Found at i:15067081 original size:26 final size:26
Alignment explanation
Indices: 15067050--15067101 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15067040 GTTGACTTAG
15067050 GCATAC-AGAGTTCATTC-CATGTCTAA
1 GCATACGA-AGTTCATTCTCA-GTCTAA
15067076 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
15067102 AAGAATGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:15067771 original size:26 final size:26
Alignment explanation
Indices: 15067740--15067792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15067730 GTTGACTTAG
15067740 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15067766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15067792 G
1 G
15067793 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15068275 original size:26 final size:26
Alignment explanation
Indices: 15068245--15068297 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15068235 GTTGGCTTAG
15068245 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
15068271 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
15068297 G
1 G
15068298 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:15068979 original size:159 final size:159
Alignment explanation
Indices: 15068688--15069155 Score: 425
Period size: 159 Copynumber: 2.9 Consensus size: 159
15068678 TATTAGATCG
* * * * * *
15068688 GACCGAGGGTTGGGGCAGCAGGATC-GGCAGCACGC-AGGGGGGATCGAGCCGAT-CCTCGCCTT
1 GACCGAGGGTTGTGGCAACAGGA-CAGACAGCACGCAAGGGGGGACCGGGCCGATACC-CGACTT
* * * * * *
15068750 GCGCATTCTGCCTCTTTGGCCGACTGAGCGCCTGCACGC-CT-GTTTCATGGGTTGGCTTAGGCA
64 GCGCATTATGCCTCTTTGGCCGACTCAGCACC--CACACACTCATTTCAGGGGTTGGCTTAGGCA
*
15068813 TAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCA
127 TACGGAGTTCATTCCATGTCTAAGCCC-AGACCA
* **
15068846 GACCGAGGGTTGTGGCAACTGGACCAG-CAGCACGC-AGAGGGGGACCGGGGTGATACCCGACTT
1 GACCGAGGGTTGTGGCAACAGGA-CAGACAGCACGCAAG-GGGGGACCGGGCCGATACCCGACTT
* ** * * * *
15068909 GCGCATTATGCCT-TTTCGGTCGACTCAGTGCCCCCACACTCATTTCGGGGGTTGACTTATGCAT
64 GCGCATTATGCCTCTTT-GGCCGACTCAGCACCCACACACTCATTTCAGGGGTTGGCTTAGGCAT
**
15068973 ACGGAGTTCATTCCCA-GTCTAAGATCAGACCA
128 ACGGAGTTCATT-CCATGTCTAAGCCCAGACCA
* * ** * ** * *
15069005 GACTGAGGGTTGTGGCAGCAGGATTGACAGCACGTAAGGGGGGATTGGGCCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAACAGGACAGACAGCACGCAAGGGGGGACCGGGCCGATACCCGACTTGC
* * * * * *
15069070 GCATTCTGCCTCTTTGGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACG
66 GCATTATGCCTCTTTGGCCGACTCAGCACCCACACACTCATTTCAGGGGTTGGCTTAGGCATACG
15069135 GAGTTCATTCCATGTCTAAGC
131 GAGTTCATTCCATGTCTAAGC
15069156 ATACGGAGTT
Statistics
Matches: 249, Mismatches: 49, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 42 0.17
159 194 0.78
160 10 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGTGGCAACAGGACAGACAGCACGCAAGGGGGGACCGGGCCGATACCCGACTTGC
GCATTATGCCTCTTTGGCCGACTCAGCACCCACACACTCATTTCAGGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCAGACCA
Found at i:15069877 original size:26 final size:26
Alignment explanation
Indices: 15069848--15069900 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15069838 GTTGACGTAG
15069848 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** * *
15069874 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15069900 G
1 G
15069901 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15070375 original size:159 final size:158
Alignment explanation
Indices: 15069874--15070375 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 158
15069864 CCCAGTCTAA
* *
15069874 GCATATGGAGTTCATTCC-TAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGAT
* * * ** * *
15069938 AACACGTAGGGGGG-CCGACCCGATCCCCGACTTGCGCATTCCGCCTCTCCAGTCGGCTGAGCGC
65 AGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTGAGCGC
* * * *
15070002 CCGCACGCCTGTTTCCTGGGTTAGCTTAG
130 CCGCATGCTTGTTTCATGGGTTGGCTTAG
* * ** * * * * *
15070031 GCATAGGGAGTTTATTCCATGTCTAAGCCCTAG-CTGGATCGAGGGTTGTGGTAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACTGGATCGAGGGTTGCGGCAGTAGGATCGAT
* * * * * * * * *
15070095 AGCATGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCTGACTCAGCA
65 AGCACGTAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTGAGCG
* * * *
15070160 CCCGCATGCTCGTTTCGTGGGTTGACTTAT
129 CCCGCATGCTTGTTTCATGGGTTGGCTTAG
* * * * * * ** *
15070190 GCATACGGAGTTAATTCCCA-GCCTAAGATCAGACCGGACCGAGGATTGCAGCAACAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGAT
* *
15070254 AGCA-GATAGGGGGGAACCGAGCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGTTGGCTGAGC
65 AGCACG-TAGGGGGG-ACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTGAGC
15070318 GCCCGCATGCTTGTTTCAT-GGTCTGGCTTAG
128 GCCCGCATGCTTGTTTCATGGGT-TGGCTTAG
15070349 GCATACGGAGTTTCATT-CATGTCTAAG
1 GCATACGGAG-TTCATTCCATGTCTAAG
15070376 CATCCGGAGT
Statistics
Matches: 268, Mismatches: 66, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 56 0.21
158 20 0.07
159 184 0.69
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGATA
GCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTGAGCGCC
CGCATGCTTGTTTCATGGGTTGGCTTAG
Found at i:15070424 original size:26 final size:25
Alignment explanation
Indices: 15070349--15070426 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 25
15070339 TCTGGCTTAG
15070349 GCATACGGAGTTTCATT-CATGTCTAA
1 GCATACGGAG-TTCATTCCA-GTCTAA
* *
15070375 GCATCCGGAGTTC-TTCGCATTCTATA
1 GCATACGGAGTTCATTC-CAGTCTA-A
*
15070401 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15070426 G
1 G
15070427 ATTTTGAGGC
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
24 2 0.05
25 9 0.21
26 29 0.67
27 3 0.07
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15071482 original size:26 final size:26
Alignment explanation
Indices: 15071451--15071503 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15071441 GTTGGCTTAG
15071451 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15071477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15071503 G
1 G
15071504 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15072204 original size:26 final size:26
Alignment explanation
Indices: 15072174--15072226 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15072164 GTTGACTTAG
*
15072174 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
15072200 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
15072226 G
1 G
15072227 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:15072845 original size:26 final size:26
Alignment explanation
Indices: 15072815--15072867 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15072805 GTTGACTTAG
15072815 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15072841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15072867 G
1 G
15072868 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15073748 original size:26 final size:26
Alignment explanation
Indices: 15073718--15073770 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15073708 GTTGACTTAG
*
15073718 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15073744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15073770 G
1 G
15073771 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15074203 original size:158 final size:157
Alignment explanation
Indices: 15073744--15074245 Score: 560
Period size: 158 Copynumber: 3.2 Consensus size: 157
15073734 CCCAGTCTAA
*
15073744 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GATCGAGGGTTGTGACAGTAGGATCGATA
* * ** * * *
15073809 GCACGCAGGGGGGACCAGGTCGAACCCTGGCTTACGCATTCTACCTCTCCGGCCAGCTGAACGCC
65 GCACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACGCC
* *
15073874 CGCACGGC-CTTTTCCTGGGTTGGCTTAG
130 CGCAC-GCTCGTTTCATGGGTTGGCTTAG
* * * * ** * *
15073902 GCATAGGGAGCTCATT-CCATGTCTAAGCTACAGTTCGATCGAGGGTTGTGGTAGTGGGACCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CAGATCGATCGAGGGTTGTGACAGTAGGATCGAT
* * * * * * *
15073966 AGCACGCAAAGGGGGACCGGATCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCG
64 AGCACGC-AGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACG
*
15074031 CCCGCACGCTCGTTTCATGGGTTGACTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
15074061 GCATACGGAGTTCCTTCCCAATCTAAGATCGGATCAGACCAAGGGTTGTGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GATCGAGGGTTGTGACAGTAGGATCGATA
** * * * *
15074126 GCACGCAGGGGGGATTGGGCCGATCCCCAGCTTTCGCATTCTGCCTCTCTGATCGGCTGAACGCC
65 GCACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACGCC
** *
15074191 TTCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
15074219 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15074246 CATATAGAGT
Statistics
Matches: 280, Mismatches: 57, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 6 0.02
158 150 0.54
159 121 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGATCGAGGGTTGTGACAGTAGGATCGATAG
CACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15074629 original size:26 final size:26
Alignment explanation
Indices: 15074599--15074651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15074589 GTTGACTTAG
15074599 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
15074625 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15074651 G
1 G
15074652 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15075134 original size:26 final size:26
Alignment explanation
Indices: 15075096--15075148 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15075086 GTTGGCTTAG
*
15075096 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15075122 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15075148 G
1 G
15075149 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15082958 original size:159 final size:159
Alignment explanation
Indices: 15082750--15083116 Score: 452
Period size: 159 Copynumber: 2.3 Consensus size: 159
15082740 CGACTGAGTG
*
15082750 CCGCACGCTCCATTTTTGTGGGTTGGCTTAGGCAATAGGGAGTTCATTCCCATGTCTAAGCCCCG
1 CCGCACGC-CCA-TTTCGTGGGTTGGCTTAGGC-ATA-GGAGTTCATTCCCATGTCTAAGCCCC-
* * *
15082815 AGCTGGACCGAGGGTTGT-GCAGCGGGATCGACAGCACGCAG-GGGGGAGCGAACCGATCCCCAA
61 AGCAGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGAGCGAACCGATCCCCAA
* *
15082878 CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
126 CTTGCGCATTATGCCTCTCCGGCCAGCTCAGCGC
*
15082912 CCGCACGCCCATTTCGTGGGTTGGCGTAGGCATAGGTAGTTCATT-CCATGTCTAAGCCCCAGCA
1 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG-AGTTCATTCCCATGTCTAAGCCCCAGCA
* * * * *
15082976 GGACTGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTCGACTTG
65 GGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGAGCGAACCGATCCCCAACTTG
* * * *
15083041 CGCATTATGCCTCTTCGGTCGGCTCAGTGC
130 CGCATTATGCCTCTCCGGCCAGCTCAGCGC
* * * * * *
15083071 CCGTACACTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTC
1 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTC
15083117 TGAGTCTAAG
Statistics
Matches: 177, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
157 16 0.09
158 38 0.21
159 92 0.52
160 20 0.11
161 3 0.02
162 8 0.05
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCCATGTCTAAGCCCCAGCAG
GACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGAGCGAACCGATCCCCAACTTGC
GCATTATGCCTCTCCGGCCAGCTCAGCGC
Found at i:15082995 original size:158 final size:157
Alignment explanation
Indices: 15082750--15083174 Score: 451
Period size: 159 Copynumber: 2.7 Consensus size: 157
15082740 CGACTGAGTG
*
15082750 CCGCACGCTCCATTTTTGTGGGTTGGCTTAGGCAATAGGGAGTTCATTCCCATGTCTAAGCCCCG
1 CCGCACGC-CCA-TTTCGTGGGTTGGCTTAGGC-ATA-GGAGTTCATT-CCATGTCTAAGCCCC-
* *
15082815 AGCTGGACCGAGGGTTGT-GCAGCGGGATCGACAGCACGCAGGGGGGAGCGAACCGATCCCCAAC
60 AGCAGGACTGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGGGGGGAGCGAACCGATCCCCAAC
* *
15082879 TTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
125 TTGCGCATTATGCCTCTCCGGCCAGCTCAGCGC
*
15082912 CCGCACGCCCATTTCGTGGGTTGGCGTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGCAG
1 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAGCCCCAGCAG
* * * * * *
15082977 GACTGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTCGACTTGC
65 GACTGAGGGTTGTGGCAGCGGGATCGACAGCACGCAG-GGGGGAGCGAACCGATCCCCAACTTGC
* * * *
15083042 GCATTATGCCTCTTCGGTCGGCTCAGTGC
129 GCATTATGCCTCTCCGGCCAGCTCAGCGC
* * * * * * * **
15083071 CCGTACACTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCTGA-GTCTAAG-ATCAGAC
1 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTC-CATGTCTAAGCCCCAG-C
* * * * * *
15083134 CGGATTGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGGG
63 AGGACTGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGGG
15083175 AGGGCCGGGC
Statistics
Matches: 223, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
157 16 0.07
158 43 0.19
159 132 0.59
160 21 0.09
161 3 0.01
162 8 0.04
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCAGG
ACTGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGGGGGGAGCGAACCGATCCCCAACTTGCGC
ATTATGCCTCTCCGGCCAGCTCAGCGC
Found at i:15083308 original size:26 final size:26
Alignment explanation
Indices: 15083255--15083310 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15083245 TAGGTTAGCT
*
15083255 TAAGCATACAGAGTTCATTCCATGTC
1 TAAGCATACAGAGTTCATTCCATATC
15083281 TAAGCATACAGAGTTCATTCCCA-ATC
1 TAAGCATACAGAGTTCATT-CCATATC
15083307 TAAG
1 TAAG
15083311 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCATATC
Found at i:15084015 original size:26 final size:26
Alignment explanation
Indices: 15083979--15084031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15083969 GTTGACTTAG
*
15083979 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
*
15084005 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
15084031 G
1 G
15084032 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:15084645 original size:158 final size:158
Alignment explanation
Indices: 15084397--15085018 Score: 448
Period size: 158 Copynumber: 3.9 Consensus size: 158
15084387 ATTGGATCGG
* ** * * * * *
15084397 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACC-AGGCTGATCCCCGGCTTACG
1 ACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGGGGGGACCGA-GCCGATCCCCGACTTGCA
* * * * * *
15084461 CATTTTGCCTCTCCGGCCGGTTGAGCAACCGTACGCCCGTTTCGTGGGTTGGCTTAAGCATATGG
65 CAATCTGCCTCTCCGGCCAGCTGAGCAACCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGG
* * *
15084526 AGTTCATTTCATG-CGTAAGCCCTAGTCAG-
130 AGTTCATTCCATGTC-TAAACCCCAG-CAGA
*
15084555 ATCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCAC
1 ACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCAC
* * * *
15084620 AATCTGCCTCTCTGGCCAGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGA
66 AATCTGCCTCTCCGGCCAGCTGAGCAACCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGA
*
15084685 GTTCATTCCATGTCTAAACCCCAGCTGA
131 GTTCATTCCATGTCTAAACCCCAGCAGA
* * * * *
15084713 ACCGAGGGTTGTGGTAGTGGGA-CCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCGACTTGC
1 ACCGAGGGTTGTGGCAGTGGGATCGA-CAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGC
* * * * * * * * ** * * * * * *
15084777 GCATTATTCCTCTTCGACC-GACTCAACGCCCGTACGCTCGTTTTGTGGGTTGACTTATGCATAC
64 ACAATCTGCCTCTCCGGCCAG-CTGAGCAACCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAG
* * * * ** *
15084841 AGAGTTCATTCTGA-GACTAAGATCAGACCAG-
128 GGAGTTCATTC-CATGTCTAA-ACCCCAGCAGA
* ** ** * * ** * * * **
15084872 GCCGAGGGTTGCAGCAGCAGGATCGATAGCACGTAGGGGGGATTGAGCCAATCCCTGGCTTGTGC
1 ACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCAC
* * * * ** * * *
15084937 ATTCTGTCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
66 AATCTGCCTCTCCGGCCAGCTGAGCAACCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGA
*
15085002 GTTCATTACATGTCTAA
131 GTTCATTCCATGTCTAA
15085019 GCATACGGAG
Statistics
Matches: 371, Mismatches: 82, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.01
158 247 0.67
159 111 0.30
160 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAGTGGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCAC
AATCTGCCTCTCCGGCCAGCTGAGCAACCGCACGCCCGTTTCGTGGGTTGGCTTAAGCATAGGGA
GTTCATTCCATGTCTAAACCCCAGCAGA
Found at i:15086114 original size:159 final size:158
Alignment explanation
Indices: 15085761--15086125 Score: 389
Period size: 159 Copynumber: 2.3 Consensus size: 158
15085751 AAGCATATGA
15085761 AGTTCATTCCCAGTCTAAGA-TTGGACCGGACCGAGGGTTGTGGTAACAGGATCGGCAGCACACA
1 AGTTCATTCCCAGTCTAAGATTTGG-CCGGACCGAGGGTTGTGGTAACAGGATCGGCAGCACACA
* * * * * *
15085825 GAGGGGATCGAGCTGATCCCCAGCTTGCGCATTCTGTCTCTTCGGCCGACTGATCGCCCGCACGC
65 GAGGGGACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTTCGACCGACTAATCGCCCGCACGC
* *
15085890 CCATTTCGTGGGTTGGCTTAGGCATAAGG
130 CCATTTCATGGGTTGACTTAGGCATAAGG
* * **** * * *
15085919 AATTCATT-CCATGTCTAAGCTCCCACTGGACCGAGGGTTGTGGTAGCAGGA-CTGGCAGCACAT
1 AGTTCATTCCCA-GTCTAAGATTTGGCCGGACCGAGGGTTGTGGTAACAGGATC-GGCAGCACAC
* * * *
15085982 AGAGGGGGACCGGGCTGATCCCCAGCTTGTACATTATGCCTC-TCTGACCGGCTCAAT-GCCTGC
64 AGA-GGGGACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTTC-GACCGACT-AATCGCCCGC
* * **
15086045 ACGCTCGTTTCATGGGTTGACTTAGGCATGCGG
126 ACGCCCATTTCATGGGTTGACTTAGGCATAAGG
* * *
15086078 AGTTCATTCCCAGTCTAAGATTTGGCCAGACTGAGGGTTGTGGCAACA
1 AGTTCATTCCCAGTCTAAGATTTGGCCGGACCGAGGGTTGTGGTAACA
15086126 AGATTGAGAG
Statistics
Matches: 164, Mismatches: 36, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 52 0.32
159 103 0.63
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATTTGGCCGGACCGAGGGTTGTGGTAACAGGATCGGCAGCACACAG
AGGGGACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTTCGACCGACTAATCGCCCGCACGCC
CATTTCATGGGTTGACTTAGGCATAAGG
Found at i:15086492 original size:26 final size:28
Alignment explanation
Indices: 15086452--15086512 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 28
15086442 TTTCGAGGGT
*
15086452 TGTCTTAGGCATACGGAGTTTATT-CCA
1 TGTCTAAGGCATACGGAGTTTATTCCCA
*
15086479 TGTCTAAGG-ATACGGGGTTTATTCCCA
1 TGTCTAAGGCATACGGAGTTTATTCCCA
15086506 -GTCTAAG
1 TGTCTAAG
15086513 ATCGAACCGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (28 bp):
TGTCTAAGGCATACGGAGTTTATTCCCA
Found at i:15088334 original size:343 final size:343
Alignment explanation
Indices: 15087621--15089419 Score: 1883
Period size: 343 Copynumber: 5.2 Consensus size: 343
15087611 TTGTGCGTTC
* ** * *
15087621 TGCCTCTCCGGCCTG-CTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
1 TGCCTCTCCGGCC-GACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * ** ** *
15087685 CAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTTTGATCGGTTCGGACCGAGGGTTGCG
65 CATCCCCA-GTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTT---
* * *
15087749 ACAGCAGGACAGGCAGAAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCA
126 ---GCA--ACA-GC---AGGATCAGCAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTACGCA
* * *
15087814 TTCTGCCT-T----T-GACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
182 TTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
* * * * * * *
15087873 TTCATTCCGA-GACTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACACAGC
247 TTCATTCC-ATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGC
* * *
15087937 GGGGGATCGAGCTGATCCTCGGCTTACGCATTA
311 GGGGGATCGGGCTAATCCTCGGCTTGCGCATTA
** * * *
15087970 TGCCTCTCCGGTTGGCTGAGCACGCACACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * * * *
15088035 AGCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACTGAGGGTTGCAAT
66 ATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCAAC
* *
15088100 AGCAGGATCAGCAGCACGCAGGGGGGATAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
131 AGCAGGATCAGCAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
* ** * *
15088165 CCGGCTGAGCGCCCGCACGCCCGTTTTATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCT
196 TCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * *
15088230 AAGCCCTAGCCGGACTGAGGGTTATGGTAGCGGGACCGGCAGCACGCAGTGGGGGA-CGGAGCTG
261 AAGCCCCAGCCGGACTGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGCGGGGGATCGG-GCTA
* *
15088294 ATCCTCGGCTTGTGCATTG
325 ATCCTCGGCTTGCGCATTA
** * * *
15088313 TGCCTCTCCAACCGACTGAGCACCCACACGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTC
1 TGCCTCTCCGGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** ** * * *
15088378 TTCCCCAGTCTAAGCATCCGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCAGC
66 ATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCAAC
* * * * *** *
15088443 AGCAGGATC-GATAGCACGTAGGAGGGACCA-AGCCGATCCCTAACTTACGTATTCTGCCTCTCC
131 AGCAGGATCAG-CAGCACGCAGGGGGGA-CAGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
* * * * * *
15088506 GGTTGGCTGAGCGCCTGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
194 GATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* *
15088571 CTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGCAGGG-CCGGCAGCACGCAGCGGGGGATTGGGC
259 CTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGC-GGGACCGGCAGCACGCAGCGGGGGATCGGGC
*
15088635 TAATCCCCGGCTTGCGCATTA
323 TAATCCTCGGCTTGCGCATTA
* *
15088656 TGCCTCTCCGGCCGGCTGAGCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
15088721 ATCCCTAGTCTAAGCAAATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGAC
66 ATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCAAC
* * * * *
15088786 AGTAGGATCAGCAGCACGAAGGGGGGATCA-AGCCGATCCCCGACTTACGCATTCTGCCTCTTCG
131 AGCAGGATCAGCAGCACGCAGGGGGGA-CAGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* * * * *
15088850 ATCGGCTCAGTGCCTGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
195 ATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
** * * * *
15088915 TAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGAGATCGGCATCACGCAGCGGGGGATCGGGCTA
260 TAAGCCCCAGCCGGACTGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGCGGGGGATCGGGCTA
* *
15088980 ATCC-CTGACTTGTGCATTA
325 ATCCTC-GGCTTGCGCATTA
* * **
15088999 TGCCTCTCCGGCC-AGCTGAGCACCCACACACTCATTTTGTGGGTTGACTTAGGCATATAGAGTT
1 TGCCTCTCCGGCCGA-CTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
15089063 CATCCCTAGTCTAAGCAAATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAAGTTGCGA
65 CATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCAA
* * * * * * *
15089128 CAGCAGGATCGGCAGCATG-AAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTTTTCG
130 CAGCAGGATCAGCAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* * * * * *
15089192 ATCGACTCAACGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
195 ATCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * *
15089257 TAAGCCCCAGCCAGACTGAGGGTTGTGGTAGTGGGACCAGCAGCACGC-GAAGGGGGA-CTGGGT
260 TAAGCCCCAGCCGGACTGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAG-CGGGGGATC-GGGC
* * *
15089320 TGATCCCCGAG-TTACGCATTA
323 TAATCCTCG-GCTTGCGCATTA
* * * ** ** * * * *
15089341 TGCCTCTTCGGCCGGCTCAGTGCCGGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTC
1 TGCCTCTCCGGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
15089406 ATTCCCAGTCTAAG
66 ATCCCCAGTCTAAG
15089420 ATCCGATCAG
Statistics
Matches: 1231, Mismatches: 195, Indels: 55
0.83 0.13 0.04
Matches are distributed among these distances:
337 53 0.04
338 1 0.00
340 2 0.00
341 5 0.00
342 225 0.18
343 834 0.68
344 7 0.01
348 1 0.00
349 100 0.08
350 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
TGCCTCTCCGGCCGACTGAGCACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCAAC
AGCAGGATCAGCAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
TCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCCGGACTGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGCGGGGGATCGGGCTAA
TCCTCGGCTTGCGCATTA
Found at i:15088399 original size:26 final size:26
Alignment explanation
Indices: 15088362--15088417 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15088352 TGGGTTGACT
15088362 TAAGCATACGGAGTTC-TTCCCCAGTC
1 TAAGCATACGGAGTTCATT-CCCAGTC
*
15088388 TAAGCATCCGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15088414 TAAG
1 TAAG
15088418 ATCAAACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15089370 original size:159 final size:159
Alignment explanation
Indices: 15089146--15089577 Score: 457
Period size: 159 Copynumber: 2.7 Consensus size: 159
15089136 TCGGCAGCAT
* * *
15089146 GAAGGGGGACCGGGTCGATCCCCG-GCTTACGCATTCTGCCTTTTCGATCGACTCAACGCTC-GC
1 GAAGGGGGACCGGGTCGATCCCCGAG-TTACGCATTCTGCCTCTTCGACCGACTCAGCGC-CGGC
*
15089209 ACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-AGCCAGAC
64 ACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCGA-CCAGAC
* **** **
15089273 TGAGGGTTGTGGTAGTGGGACC-AGCAGCACGC
128 CGAGGGTTACACTAGCAGGACCGA-CAGCACGC
* * * * * *
15089305 GAAGGGGGACTGGGTTGATCCCCGAGTTACGCATTATGCCTCTTCGGCCGGCTCAGTGCCGGCAC
1 GAAGGGGGACCGGGTCGATCCCCGAGTTACGCATTCTGCCTCTTCGACCGACTCAGCGCCGGCAC
* * * ** *
15089370 GCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCCGATCAGACCG
66 GCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCGACCAGACCG
*
15089434 AGGGTTACACTAGCAGGATCGACAGCACGC
130 AGGGTTACACTAGCAGGACCGACAGCACGC
* * * * * * *
15089464 --AGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGTCGGCAC
1 GAAGGGGGACCGGGTCGATCCCCGAGTTACGCATTCTGCCTCTTCGACCGACTCAGCGCCGGCAC
* *
15089527 G-CTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGC
66 GCCCA-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15089578 ATACAAAGTT
Statistics
Matches: 223, Mismatches: 43, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
156 4 0.02
157 89 0.40
158 1 0.00
159 123 0.55
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GAAGGGGGACCGGGTCGATCCCCGAGTTACGCATTCTGCCTCTTCGACCGACTCAGCGCCGGCAC
GCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCGACCAGACCGA
GGGTTACACTAGCAGGACCGACAGCACGC
Found at i:15089554 original size:157 final size:156
Alignment explanation
Indices: 15089083--15089576 Score: 487
Period size: 157 Copynumber: 3.1 Consensus size: 156
15089073 CTAAGCAAAT
* * ** * *
15089083 GGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAAAGTTGCGAC-AGCAGGATCGGCAGCAT
1 GGAGTTCATT-CCATGTCTAAGATCCGATCAGACCGAGGGTTGC-ACTAGCAGGATCGACAGCAC
* * * * *
15089146 GAAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTTTTCGATCGACTCAACGCTC-GCA
64 GCAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGACTCAGCG-TCGGCA
* *
15089210 CGCCCATTTCATGGGTTGGCTTAGGCATAG
128 CG-CTATTTCATGGGTTGGCTTAGGCATAC
* * * * *** ** *
15089240 GGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACTGAGGGTTGTGGTAGTGGGA-CCAGCAGCAC
1 GGAGTTCATTCCATGTCTAAGATCCGA-TCAGACCGAGGGTTGCACTAGCAGGATCGA-CAGCAC
* * * * * * * *
15089303 GCGAAGGGGGACTGGGTTGATCCCCGAGTTACGCATTATGCCTCTTCGGCCGGCTCAGTGCCGGC
64 GC--AGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGACTCAGCGTCGGC
* *
15089368 ACGCTCATTTCATGGGTTGACTTATGCATAC
127 ACGCT-ATTTCATGGGTTGGCTTAGGCATAC
*
15089399 GGAGTTCATTCCCA-GTCTAAGATCCGATCAGACCGAGGGTTACACTAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCCGATCAGACCGAGGGTTGCACTAGCAGGATCGACAGCACG
* * * * *
15089463 CAGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCGTCGGCACG
65 CAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGACTCAGCGTCGGCACG
15089528 CTAGTTTCATGGGTTGGCTTAGGCATAC
130 CTA-TTTCATGGGTTGGCTTAGGCATAC
*
15089556 GGAGTTAATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
15089577 CATACAAAGT
Statistics
Matches: 264, Mismatches: 60, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
156 10 0.04
157 129 0.49
158 2 0.01
159 115 0.44
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GGAGTTCATTCCATGTCTAAGATCCGATCAGACCGAGGGTTGCACTAGCAGGATCGACAGCACGC
AGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGACTCAGCGTCGGCACGC
TATTTCATGGGTTGGCTTAGGCATAC
Found at i:15090321 original size:26 final size:26
Alignment explanation
Indices: 15090285--15090334 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15090275 GACTTAGGCA
15090285 TATGGAGTTCATCCCCAGTCTAAGCG
1 TATGGAGTTCATCCCCAGTCTAAGCG
*
15090311 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATCCCCAGTCTAAG
15090335 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAGTCTAAGCG
Found at i:15090602 original size:159 final size:157
Alignment explanation
Indices: 15090436--15090811 Score: 389
Period size: 159 Copynumber: 2.4 Consensus size: 157
15090426 CGACTGAGTG
* * * * *
15090436 CCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTTCTTGTCTAAGCCCTAGTC
1 CCCGCACGCACGTTTCATGGGTT-GCTTAGGCATACGGAGTTCAATTCTTGTCTAAGCCCGAAT-
* * * * * *
15090501 AGATCGAGGGTTGTGGCAGTGGGATCGACAGCACATAGAGGGGGATCGGACT-GAT-CCCCAAGT
64 AGACCGAGGGTTGCGGCAGTAGGATCAACAGCACATAG-GGGAGATC-GACTCGATCCCCCAACT
*
15090564 TTCGCATTATGCCTCTCCGACCGGCTCAGCA
127 TGCGCATTATGCCTCTCCGACCGGCTCAGCA
* * * * * * *
15090595 TCCGCACGCACATTTCATGGGTTGACTTAGGCATACAGAGTTC-CTTCTCAGTCTAAGATCGGAA
1 CCCGCACGCACGTTTCATGGGTTG-CTTAGGCATACGGAGTTCAATTCT-TGTCTAAG-CCCGAA
* * * *
15090659 TGGACCGAGGGTTGCGGTAGTAGGATCAACAGCACGTAGGGGAGATCGAGTCGATCCCCCAACTT
63 TAGACCGAGGGTTGCGGCAGTAGGATCAACAGCACATAGGGGAGATCGACTCGATCCCCCAACTT
* * * *
15090724 GCGCATTCTGCCTCTCCGGCCGGTTGAGCA
128 GCGCATTATGCCTCTCCGACCGGCTCAGCA
* * *
15090754 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGC
1 CCCGCACGCACGTTTCATGGGTT-GCTTAGGCATACGGAGTTCAATTCTTGTCTAAGC
15090812 ATGCGAAGTT
Statistics
Matches: 175, Mismatches: 35, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 15 0.09
159 151 0.86
160 6 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
CCCGCACGCACGTTTCATGGGTTGCTTAGGCATACGGAGTTCAATTCTTGTCTAAGCCCGAATAG
ACCGAGGGTTGCGGCAGTAGGATCAACAGCACATAGGGGAGATCGACTCGATCCCCCAACTTGCG
CATTATGCCTCTCCGACCGGCTCAGCA
Found at i:15090813 original size:26 final size:26
Alignment explanation
Indices: 15090784--15090836 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15090774 GTTGGCTTAG
*
15090784 GCATACGGAGTTCAATC-CATGTCTAA
1 GCATACGAAGTTCAATCTCA-GTCTAA
* *
15090810 GCATGCGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCAATCTCAGTCTAA
15090836 G
1 G
15090837 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATCTCAGTCTAA
Found at i:15091479 original size:159 final size:159
Alignment explanation
Indices: 15091316--15091826 Score: 377
Period size: 159 Copynumber: 3.2 Consensus size: 159
15091306 TGCATGCCCA
15091316 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTT
* * *
15091381 GTGGCAGCGA-GATCGACAGCATGCAGAGG-GGGACCT-AGTTGATCCCCAGCTTGTGCATTATG
66 GTGGCAGCGAGGATCGACAGCA--CACAGGAGGGA-CTGAGCTGATCCCCAGCTTGCGCATTATG
* * *
15091443 CCTCTTCGA-TCGGCTCAGGGCCCGAATGCTCG
128 CCT-TTCGAGCCAGCTCAGGGCCCGAACGCTCG
* * * ****
15091475 TTTCGTGGGTTGACTTAGGCAT-GCGGAGTTCACTCCCA-GTCTATG-ATTGGATCAGA-TCGAG
1 TTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCA-TTCCATGTCTAAGCCCCAG-TCAGACT-GAG
* * * * * * *
15091536 GGCTGCGGTAGC-AGGATCGACAGCACACCGGAAGGGACTGGGCTGATCCCCGGCTTGCGCATTC
62 GGTTGTGGCAGCGAGGATCGACAGCACACAGG-AGGGACTGAGCTGATCCCCAGCTTGCGCATTA
* * * *
15091600 TGCCTTTCTAGCCAGCTGAGTGCCCGCACGCTCG
126 TGCCTTTCGAGCCAGCTCAGGGCCCGAACGCTCG
** * *
15091634 TTTCGTGGGTTGGCTTAGTTACAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GAACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACTGAGGGT
* ** * ** * * *
15091698 TGTGGCAGCG-GGA-CCAGCAGCACGTAGG-GGGA-TAGGGCCAATCCCCGGCCTGCGTATTATG
65 TGTGGCAGCGAGGATCGA-CAGCACACAGGAGGGACT-GAGCTGATCCCCAGCTTGCGCATTATG
* * * * * * *
15091759 CCTCTTTG-GCCGGTTCAGCGTCCGCACGCCCG
128 CCT-TTCGAGCCAGCTCAGGGCCCGAACGCTCG
* * *
15091791 TTTCGTGGGTTGACTTACGCATACGGAGTTCATTCC
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
15091827 CAGTCAAAAT
Statistics
Matches: 273, Mismatches: 61, Indels: 38
0.73 0.16 0.10
Matches are distributed among these distances:
156 1 0.00
157 81 0.30
158 19 0.07
159 166 0.61
160 6 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTT
GTGGCAGCGAGGATCGACAGCACACAGGAGGGACTGAGCTGATCCCCAGCTTGCGCATTATGCCT
TTCGAGCCAGCTCAGGGCCCGAACGCTCG
Found at i:15092716 original size:26 final size:26
Alignment explanation
Indices: 15092687--15092739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15092677 GTTGACTTAG
*
15092687 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15092713 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15092739 G
1 G
15092740 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15093215 original size:159 final size:158
Alignment explanation
Indices: 15092713--15093206 Score: 530
Period size: 159 Copynumber: 3.1 Consensus size: 158
15092703 CCCAGTCTAA
* * *
15092713 GCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACAGCAACAGGATCGACA
1 GCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGC-GTAGCAGGATCGACA
* * * *
15092778 GCACGCA-GGGGGGACTGGGCCGATCCCCAGCTTGCGCGTTCTGCCTCTCCGACCGGCTGAGCGG
65 GCACGCAGGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
15092842 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
15092871 GCATATGGAGTTAATT-CCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTCGTAGCGGGACCGA
1 GCATATGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACCGAGGGTTG-CGTAGCAGGATCGA
* * * * * * * * * * *
15092934 TAGCACGCAGAGAGGGA-TCGAGTCGGA-CCCCGACTTGCGCATTATGCCTCTTCGGTTGGCTCA
63 CAGCACGCAGGGGGGGACT-G-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * *
15092997 ACGCCCACACGCTCGTTTCATGGATTGACTTAG
126 GCGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15093030 GTATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGC-GTAGCAGGATCGACA
* * * * *
15093095 ACACACAGGGGGGGACTGGGCCGATACCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
65 GCACGCAGGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
15093160 CCACACGCTTGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCGTTTCGTGGGTTGGCTTAG
15093189 GCATATGGAGTTCATTCC
1 GCATATGGAGTTCATTCC
15093207 ATGTCTAAGC
Statistics
Matches: 261, Mismatches: 64, Indels: 21
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 60 0.23
159 190 0.73
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGTAGCAGGATCGACAG
CACGCAGGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15093228 original size:26 final size:26
Alignment explanation
Indices: 15093189--15093241 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15093179 GTTGGCTTAG
* *
15093189 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
15093215 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15093241 G
1 G
15093242 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15093435 original size:26 final size:26
Alignment explanation
Indices: 15093398--15093476 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15093388 GTTGACTTAG
*
15093398 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
15093424 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15093450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15093476 G
1 G
15093477 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15093948 original size:26 final size:26
Alignment explanation
Indices: 15093912--15093962 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15093902 TAGCTTAGGC
*
15093912 ATACGGAGTTC-TTTCCACGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
15093938 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15093963 AGTTTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:15094657 original size:26 final size:27
Alignment explanation
Indices: 15094620--15094672 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
15094610 CGTGGGTTGA
15094620 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
* *
15094647 CTTA-GCATACGGGGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
15094673 GTAAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:15095353 original size:26 final size:26
Alignment explanation
Indices: 15095323--15095375 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15095313 GTTGACTTAG
*
15095323 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
15095349 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
15095375 G
1 G
15095376 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:15095859 original size:26 final size:26
Alignment explanation
Indices: 15095823--15095875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15095813 GTTGGCTTAG
*
15095823 GCATACGGAGTTC-TTTCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15095849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15095875 G
1 G
15095876 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15097962 original size:26 final size:26
Alignment explanation
Indices: 15097923--15097975 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15097913 GTTGACTTAG
*
15097923 GCATACGGAATTCATCCCTAGTCTAA
1 GCATACGGAATTCATCCCAAGTCTAA
*
15097949 GCATAC-GAATTTCATTCCAAGTCTAA
1 GCATACGGAA-TTCATCCCAAGTCTAA
15097975 G
1 G
15097976 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCCAAGTCTAA
Found at i:15098460 original size:26 final size:26
Alignment explanation
Indices: 15098424--15098476 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15098414 GTTGCCTTAG
*
15098424 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15098450 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15098476 G
1 G
15098477 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15099146 original size:159 final size:158
Alignment explanation
Indices: 15098889--15099315 Score: 356
Period size: 159 Copynumber: 2.7 Consensus size: 158
15098879 TAGCACATAA
* * * * * * ** * * * *
15098889 GGGGGACTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGTTGAGCGTCCGCACGCC
1 GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACTAGCTCAGCGCCCGCACGCT
* * ** * * * * *
15098954 CATTTCATGCATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACCAAGG
66 CGTTTAATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACC-AGATCAGACCAAGG
* *
15099018 GTTGTGGTAACAAGATCGAGAGCATACAG
130 GTTGCGATAACAAGATCGAGAGCATACAG
* * * *
15099047 AGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCG-GTCAGCTCAGGGCCCGCATG
1 -GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACT-AGCTCAGCGCCCGCACG
* * * * *
15099111 CTCGTTTAATGGGTTGACTTATGCGTACGAAGTTCATTCCCA-ATCTAAGATCAGATCAGACCGA
64 CTCGTTTAATGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGACCAGATCAGACCAA
* * * * * *
15099175 TGGTTGCGATAGCAGGATCGATAGCTTGCAG
128 GGGTTGCGATAACAAGATCGAGAGCATACAG
* * * * * * *
15099206 GGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGTACGCT
1 GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACTAGCTCAGCGCCCGCACGCT
** * *
15099271 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CGTTTAATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTA
15099316 GGCATATGGA
Statistics
Matches: 208, Mismatches: 55, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 88 0.42
159 114 0.55
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACTAGCTCAGCGCCCGCACGCT
CGTTTAATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCAGATCAGACCAAGGG
TTGCGATAACAAGATCGAGAGCATACAG
Found at i:15100042 original size:26 final size:26
Alignment explanation
Indices: 15100013--15100065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15100003 GTTGACTTAG
*
15100013 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15100039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15100065 G
1 G
15100066 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15100346 original size:159 final size:158
Alignment explanation
Indices: 15100039--15101174 Score: 680
Period size: 159 Copynumber: 7.2 Consensus size: 158
15100029 CCCAGTCTAA
** * * ** * * *
15100039 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACAGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * * * * * * **
15100102 TAGCACGTAG--GGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCGACTGACTGAGT
64 CAGCACG-AGAAGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAAC
* * * *
15100165 GCCCGCACGCCCGTTTCATGGGTTGGCTTAA
128 ACCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * *
15100196 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGTAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACA
15100261 GCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAACAC
66 GCACG-AGAAGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAACAC
*
15100326 CCGCACGCTCGTTTCGTGGGTTGACTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* * ** * * *** * *
15100355 GCGTACGAAGTTCATTCCCA-GTCTAAG-ATCGGATCGGGTTGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * * * * * * * ** *
15100418 CAGCACG-CAAGCGTGGATCAGGTCGGTCCTCGGCTTACGCATTCTACCTCTCTGGCCGACGGAG
64 CAGCACGAGAAG-G-GGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAA
*
15100482 CACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CACCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * * *
15100514 GCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGTAACGGGACTGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACA
* * ** *
15100579 GCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGATCGACTCAGCAC
66 GCACG-AGAAGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAACAC
* *
15100643 CCGCACGCTCGTTTTGTGGGTTGACTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
** * ** * * * **
15100672 GCATAAAGAGTTCATTCC-TAATCTAAG-ATCAGATCAGATCGAGGGTTGTGACAGCAGGATTGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * ** * * * ** * * *
15100735 CGGCACG-CAAGGTGGACCGAGCTGATCCCCGGTTTGCTTATTTTGCCTTTTCGGTTGGCTGAAT
64 CAGCACGAGAAGG-GGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAAC
* * *
15100799 GCCCGCACGCCCGTTTTGTGGGTTGGCTTAG
128 ACCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * * * *
15100830 ACGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGATTATGGCAGCGGGACCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACA
* * * * * * ** * *
15100895 GCATGCAGAGGGGGATCGGGCTGACCCCCGGCTTGCAAATTATGCCTCTCCGTTCGGCTCAACGC
66 GCACG-AGAAGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAACAC
* * *
15100960 CCGAACGCTCATTTCGTGGGTTGACTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* ** * * * * ** * * *
15100989 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACTGACGGTTGCCGCCGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGA
* * * ** * * * * * **
15101052 CAGCAC-ACAGGGGGGACCGGGCCGGTCCCCAACTTGCACATTCTACCTCTCCGGTCGGCTGAGT
64 CAGCACGAGA-AGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAAC
* * * * * *
15101116 GCCTGCACGCTCATTTCGTAGGTTGGCTTAG
128 ACCCGCACGCCCGTTTCGTGGGTTGACTTAG
* *
15101147 GCATACGGAGTTCATTCCAAGTCCAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15101175 TTAAGGAGTT
Statistics
Matches: 750, Mismatches: 204, Indels: 48
0.75 0.20 0.05
Matches are distributed among these distances:
156 3 0.00
157 66 0.09
158 327 0.44
159 342 0.46
160 12 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACA
GCACGAGAAGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTCAACACC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:15100689 original size:317 final size:317
Alignment explanation
Indices: 15100046--15101174 Score: 1242
Period size: 317 Copynumber: 3.6 Consensus size: 317
15100036 TAAGCATACG
* * * * * *
15100046 GAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTACGGTAGCAGGATCGATAGCACG-T
1 GAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * *
15100110 AGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCGACTGACTGAGTGCCCGCACGC
66 AGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGTGCCCGCACGC
* *
15100175 CCGTTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
131 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
* * *
15100240 GTTGTGGTAGCGGGACCGGCAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCACATTATG
196 GTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATG
** * *
15100305 CCTCTCCGGCCGACTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGT-AC
261 CCTCTCCGATCGACTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAA
* * ** *
15100361 GAAGTTCATTCCCAGTCTAAGATCGGATCGGGTTGAGGGTTGTGGCAGCAGGATCGACAGCACGC
1 G-AGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * * * * **
15100426 AAGCGTGGATCAGGTCGGTCCTCGGCTTACGCATTCTACCTCTCTGGCCGACGGAGCACCCGCAC
65 AAG-GGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGTGCCCGCAC
* * *
15100491 GCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAA
129 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAA
* * *
15100556 GGGTTGTGGTAACGGGACTGACAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCACATTA
194 GGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTA
* *
15100620 TGCCTCTCCGATCGACTCAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAAA
259 TGCCTCTCCGATCGACTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAA
* * * * * *
15100679 GAGTTCATTCCTAATCTAAGATCAGATCAGA-TCGAGGGTTGTGACAGCAGGATTGACGGCACGC
1 GAGTTCATTCCCAATCTAAGATCAGATCGGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * ** * ** * * * * ** * *
15100743 AAGGTGGACC-GAGCTGATCCCCGGTTTGCTTATTTTGCCTTTTCGGTTGGCTGAATGCCCGCAC
65 AAGGGGGACCAG-GCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGTGCCCGCAC
* * * *
15100807 GCCCGTTTTGTGGGTTGGCTTAGACGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
129 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAA
* * * * * * * * *
15100872 GGATTATGGCAGCGGGACCGATAGCATGCAGAGGGGGATCGGGCTGACCCCCGGCTTGCAAATTA
194 GGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTA
* * * * * **
15100937 TGCCTCTCCGTTCGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACG
259 TGCCTCTCCGATCGACTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAA
* * * * *
15100996 GAGTTCATTCCCAATCTAAGATCAGACCGGACTGACGGTTGCCGCCGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * * * * *
15101061 GGGGGGACCGGGCCGGTCCCCAACTTGCACATTCTACCTCTCCGGTCGGCTGAGTGCCTGCACGC
66 AGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGTGCCCGCACGC
* * * * * *
15101126 TCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCCAAGC
131 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15101175 TTAAGGAGTT
Statistics
Matches: 672, Mismatches: 133, Indels: 16
0.82 0.16 0.02
Matches are distributed among these distances:
315 2 0.00
316 175 0.26
317 357 0.53
318 138 0.21
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (317 bp):
GAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
AGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGTGCCCGCACGC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
GTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATG
CCTCTCCGATCGACTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAA
Found at i:15102440 original size:26 final size:26
Alignment explanation
Indices: 15102410--15102463 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15102400 TGGGTTGACT
15102410 TAGGCATATGGAGTTCATCCCCAGTC
1 TAGGCATATGGAGTTCATCCCCAGTC
* *
15102436 TAGGCATATGTAGTTCATTCCCAGTC
1 TAGGCATATGGAGTTCATCCCCAGTC
15102462 TA
1 TA
15102464 AGATTGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATATGGAGTTCATCCCCAGTC
Found at i:15102654 original size:21 final size:22
Alignment explanation
Indices: 15102628--15102677 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
15102618 TCTAAGCCCA
* *
15102628 AGCCGGACT-GAGGGTTGTGGT
1 AGCCGGACTCAAGGGTTGTGGC
15102649 AGCCGGA-TCAAGGGTTGTGGC
1 AGCCGGACTCAAGGGTTGTGGC
*
15102670 AGCAGGAC
1 AGCCGGAC
15102678 CGGCAGCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.20, C:0.18, G:0.44, T:0.18
Consensus pattern (22 bp):
AGCCGGACTCAAGGGTTGTGGC
Found at i:15103848 original size:26 final size:26
Alignment explanation
Indices: 15103812--15103862 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15103802 GTTGACTTAG
*
15103812 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15103838 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
15103863 GGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15104033 original size:26 final size:26
Alignment explanation
Indices: 15103997--15104049 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15103987 GTTGGCTTAT
15103997 GCATACAGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
* *
15104023 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
15104049 G
1 G
15104050 ATCGGGCCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:15104497 original size:159 final size:158
Alignment explanation
Indices: 15104227--15104537 Score: 376
Period size: 159 Copynumber: 2.0 Consensus size: 158
15104217 ATTATCGGAT
* * *
15104227 CAGACCGAGGGTTGAGGCAGTAGGATCGGTAGCACATAGGGGGGACTGGACCGATCCTCGACTTG
1 CAGACCGAGGGTTGAGGAAGTAGGACCGGTAGCACATAGGGGGGACTGGACCGATCCCCGACTTG
* * *
15104292 CACATTCTACCTCTCCGACCGATCGAGCGCTCACACGCCCGTTTCGTCGGTTTGAATAGGC-ATA
66 CACATTCTACCTCTCCGACCGATCGAGCGCCCACACGCCCATTTCGTCGGTTGGAATA-GCAATA
* *
15104356 GGGAGTTCATTCCATGTCTAAGCCCTAGC
130 CGGAGTTCATTCCATGTCCAAGCCCTAGC
* * * *
15104385 CAGACCGAGGGTTGTGGAAGTAGGACCGGTAGCACGTAGAGGGGGA-TCGGGCCGATCCCCGGCT
1 CAGACCGAGGGTTGAGGAAGTAGGACCGGTAGCACATAG-GGGGGACT-GGACCGATCCCCGACT
* * * * * * * **
15104449 TGCGCATTCTACCTTTCCGACTG-GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCAA
64 TGCACATTCTACCTCTCCGACCGATC-GAGCGCCCACACGCCCATTTCGTCGGTTGGAATAGCAA
15104513 TACGGAGTTCATTCCATGTCCAAGC
128 TACGGAGTTCATTCCATGTCCAAGC
15104538 ATACGGAGTT
Statistics
Matches: 128, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
158 39 0.30
159 89 0.70
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGACCGAGGGTTGAGGAAGTAGGACCGGTAGCACATAGGGGGGACTGGACCGATCCCCGACTTG
CACATTCTACCTCTCCGACCGATCGAGCGCCCACACGCCCATTTCGTCGGTTGGAATAGCAATAC
GGAGTTCATTCCATGTCCAAGCCCTAGC
Found at i:15105272 original size:26 final size:26
Alignment explanation
Indices: 15105234--15105286 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15105224 GTTGACTTAC
15105234 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15105260 GCATACA-ATGTTCATTCTCAGTCTAA
1 GCATACAGA-GTTCATCCCCAGTCTAA
15105286 G
1 G
15105287 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15105612 original size:26 final size:26
Alignment explanation
Indices: 15105576--15105628 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15105566 GTTGACTTAG
15105576 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
15105602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15105628 G
1 G
15105629 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15106114 original size:26 final size:26
Alignment explanation
Indices: 15106077--15106129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15106067 GTTGGCTTAG
*
15106077 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15106103 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15106129 G
1 G
15106130 ATTGAGACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15106509 original size:26 final size:26
Alignment explanation
Indices: 15106457--15106509 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15106447 GTTGACCTAG
* *
15106457 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15106483 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15106509 G
1 G
15106510 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15106994 original size:26 final size:26
Alignment explanation
Indices: 15106958--15107009 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15106948 GTTGGCTTAG
15106958 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15106984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15107010 AATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15108236 original size:26 final size:26
Alignment explanation
Indices: 15108196--15108248 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15108186 GTTGGCTTAG
15108196 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
15108222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
15108248 G
1 G
15108249 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:15108954 original size:26 final size:26
Alignment explanation
Indices: 15108918--15108970 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15108908 GTTGACTTAG
* *
15108918 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
15108944 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15108970 G
1 G
15108971 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15109315 original size:159 final size:157
Alignment explanation
Indices: 15109068--15109444 Score: 386
Period size: 157 Copynumber: 2.4 Consensus size: 157
15109058 CGACTGACTG
* * * ** *
15109068 AGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCC
1 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCC
* * * * * *
15109133 AGCCAGACTGAGGTTTGTCGCAAC-GAGACAGGCAGCATGCAG-AGGGGGATCGGGTCGATCCTC
66 AGCCAGACCGAGGGTTGTCGCAACAG-GACAGACAGCA--C-GTAGGGGGACCAGGTCGATCCCC
* * * * *
15109196 AACTTGCGCATTATGCCTCTTTAGCCTGCTC
127 AACTTGCACATTATACCACTTCAGCCGGCTC
* *
15109227 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTATGCATACAGAGTTCATTCCCA-GTCTAAGA-C
1 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGACC
* ** *
15109290 CGGACCAGACCGAGGGTTG-CAGCAACAGGATTGACAGCACGTAGGGGGACCAGGTCGATCCCCG
65 CAG-CCAGACCGAGGGTTGTC-GCAACAGGACAGACAGCACGTAGGGGGACCAGGTCGATCCCCA
* * * * *
15109354 GCTTGCACATTCTACCACTTCGGTCGGCTG
128 ACTTGCACATTATACCACTTCAGCCGGCTC
* *
15109384 AGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCATGTCTAAG
1 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
15109445 CATACGGAGT
Statistics
Matches: 180, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
156 4 0.02
157 92 0.51
158 4 0.02
159 76 0.42
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCC
AGCCAGACCGAGGGTTGTCGCAACAGGACAGACAGCACGTAGGGGGACCAGGTCGATCCCCAACT
TGCACATTATACCACTTCAGCCGGCTC
Found at i:15111056 original size:26 final size:26
Alignment explanation
Indices: 15111027--15111076 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15111017 GTTGACTTAG
15111027 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15111053 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
15111077 CAGATCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15111610 original size:26 final size:26
Alignment explanation
Indices: 15111581--15111633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15111571 GTTGACTTAG
*
15111581 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15111607 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15111633 G
1 G
15111634 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15111959 original size:26 final size:26
Alignment explanation
Indices: 15111923--15111975 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15111913 GTTGGCTTAG
15111923 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15111949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15111975 G
1 G
15111976 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15112679 original size:26 final size:26
Alignment explanation
Indices: 15112643--15112695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15112633 GTTAACTTAG
15112643 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15112669 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15112695 G
1 G
15112696 ATCAAATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15113142 original size:26 final size:26
Alignment explanation
Indices: 15113113--15113166 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
15113103 GGGTTGGCTT
*
15113113 AGCATACGGAGTTCA-TTCCATGTCTA
1 AGCATACAGAGTTCATTTCCA-GTCTA
15113139 AGCATACAGAGTTCATTTCCAGTCTA
1 AGCATACAGAGTTCATTTCCAGTCTA
15113165 AG
1 AG
15113167 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
AGCATACAGAGTTCATTTCCAGTCTA
Found at i:15113477 original size:171 final size:170
Alignment explanation
Indices: 15113140--15113527 Score: 444
Period size: 171 Copynumber: 2.3 Consensus size: 170
15113130 CCATGTCTAA
* * * * **
15113140 GCATACAGAGTTCATTTCCA-GTCTAAG--ATCAGACCAGACCGAGGGTTGTAGCAGCAAGACCA
1 GCATACAGAGTTCA-TTCCATGTCTAAGCCA-CAG-CCAGACCGAGGGTTATGGTAGCAGGACTG
* * * * * *
15113202 GTAG-CAGGATCGACAGCACGTAGGGGGGACTGGGCTGATCCTCGGCTTGCACATTCTACCTCTC
63 GTAGTGA-GATCGACAGCACGCAGGGAGGACCGAGCTGATCCCCGGCTTGCACATTCTACCTCTC
* * * *
15113266 CAGCTGGTTGAGCACCCGTATGCTCATTTCATGGGTTGGCTTAG
127 CAGCCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAG
* * *
15113310 GCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTATGGTAGCAGGACTGGTA
1 GCATACAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTATGGTAGCAGGACTGGTA
* * *
15113375 GTGAGATCGACAGCACGCAGTGGAGGACCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCT-CTG
66 GTGAGATCGACAGCACGCAG-GGAGGACCGAGCTGATCCCCGGCTTGCACATTCTACCTCTCCAG
**
15113439 ACCGGTTGAGCACTTGCACGCCCATTTCATGGGTTGGCTTAG
130 -CCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAG
* * *
15113481 GGATAGAGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAGGGTT
1 GCATACAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTT
15113528 GTGGCAGCGG
Statistics
Matches: 182, Mismatches: 30, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
169 5 0.03
170 63 0.35
171 114 0.63
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (170 bp):
GCATACAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTATGGTAGCAGGACTGGTA
GTGAGATCGACAGCACGCAGGGAGGACCGAGCTGATCCCCGGCTTGCACATTCTACCTCTCCAGC
CGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:15114146 original size:26 final size:26
Alignment explanation
Indices: 15114116--15114168 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15114106 GTTGGCTTAG
15114116 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
15114142 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15114168 G
1 G
15114169 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15114370 original size:26 final size:26
Alignment explanation
Indices: 15114327--15114378 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15114317 TGACTTAGGC
*
15114327 ATACGGAGTCCATCCCCAGTCTAAGA
1 ATACGAAGTCCATCCCCAGTCTAAGA
* *
15114353 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTCCATCCCCAGTCTAAGA
15114379 TCAGACCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (26 bp):
ATACGAAGTCCATCCCCAGTCTAAGA
Found at i:15114703 original size:26 final size:26
Alignment explanation
Indices: 15114667--15114719 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15114657 GTTGGCTTAG
15114667 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATATGGAGTTCATTCCAAGTCTAA
*
15114693 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCAAGTCTAA
15114719 G
1 G
15114720 AGCTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCAAGTCTAA
Found at i:15115425 original size:26 final size:26
Alignment explanation
Indices: 15115389--15115441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15115379 GTTGACTTAG
*
15115389 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15115415 GCATACTGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15115441 G
1 G
15115442 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15116618 original size:26 final size:26
Alignment explanation
Indices: 15116589--15116641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15116579 GTTGACTTAG
15116589 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15116615 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15116641 G
1 G
15116642 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15116640 original size:344 final size:351
Alignment explanation
Indices: 15116224--15116854 Score: 843
Period size: 355 Copynumber: 1.8 Consensus size: 351
15116214 GCCCATACAA
* * *
15116224 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTATGTATATAGAGTTCATTCT
1 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCT
* *
15116289 CAGTCTAAGATCGGA-CTGAATCGAGGGTTGCGGTAG-CA-C-G-CA-G-A-GGGGACCGGGCCA
66 CAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGTAGACATCGGACACGAAGGGGGACCGGGCCA
* * *
15116346 ATCCCC-AGCTTACGCATTCTGCC-CTTCCGACCGGTTGAGTACCCGCACGCCCGTTTCGCGGGT
130 ATCCCCGA-CTTACGCATTCTGCCTC-TCCGACCGGCTGAGTACCCGCACGCCCATTTCACGGGT
* *
15116409 TGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCCGAACCGAAGGTTATGGCAGTGG
193 TGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCCGAACCGAAGGTTATGACAGCGG
* *
15116474 GACCGGTAGCACGCAGAGGAGGATCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGG
258 GACCGGCAGCACACAGAGGAGGATCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGG
15116539 CCTCTCCGGCCGACTGATCGCCCGTATAC
323 CCTCTCCGGCCGACTGATCGCCCGTATAC
* * *
15116568 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC-
1 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCT
* *
15116632 CTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGAAGATCGGCAACACGTAAGGGGGACCGG
66 C-AGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAG-ACATCGG--ACACG-AAGGGGGACCGG
* * * * * *
15116697 GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTACGCCTATTTCATGG
126 GCCAATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTACCCGCACGCCCATTTCACGG
* * * * *
15116762 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCTAGCCGGACCGAGGGTTATGACAGC
191 GTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCCGAACCGAAGGTTATGACAGC
* *
15116827 GGGACCGGCAGCACATAGAGGGGGATCG
256 GGGACCGGCAGCACACAGAGGAGGATCG
15116855 GATAGATCCT
Statistics
Matches: 242, Mismatches: 30, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
343 1 0.00
344 87 0.36
345 2 0.01
346 1 0.00
347 1 0.00
348 1 0.00
351 2 0.01
352 1 0.00
354 1 0.00
355 143 0.59
356 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (351 bp):
TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCT
CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGACATCGGACACGAAGGGGGACCGGGCCAA
TCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTACCCGCACGCCCATTTCACGGGTTGG
CTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCCGAACCGAAGGTTATGACAGCGGGAC
CGGCAGCACACAGAGGAGGATCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGGCCT
CTCCGGCCGACTGATCGCCCGTATAC
Found at i:15116917 original size:159 final size:158
Alignment explanation
Indices: 15116700--15117279 Score: 517
Period size: 159 Copynumber: 3.6 Consensus size: 158
15116690 GGACCGGGCC
* * * * * *
15116700 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTACGCCT-ATTTCATGGGT
1 GATCCTCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGTGCCCGCAC-CCTCGTTTCATGGGT
* * * *
15116764 TGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCTAG-CCGGACCGAGGGTT--ATGACAG
65 TGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGACC-AGACCGGACCAAGGGTTGCA-G-CAG
* * *
15116826 CGGGACCGGCAGCACATAGAGGGGGATCGGATA
126 CAGGACCGACAGCACACAGAGGGGGATCGGATA
* * * *
15116859 GATCCTCGACTTGCGCATTATGCCTCTCTGGCCAGCTCAATGCCTGCACCCTCGTTTCATGGGTT
1 GATCCTCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGTGCCCGCACCCTCGTTTCATGGGTT
* * *
15116924 GACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGG
66 GGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACCAAGGGTTGCAGCAGCAGG
* * *
15116989 ATCGACAGCACACAGGGGGGGATCGGATC
130 ACCGACAGCACACAGAGGGGGATCGGATA
* * * ** * *
15117018 GATCCAT-GGCTTGTGCATTCTGCCTCTCTGGCTAGCTGAGCACCCGCACACTCGTTTCATGAGT
1 GATCC-TCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGTGCCCGCACCCTCGTTTCATGGGT
* * * * *
15117082 TGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAA-GGTTGCGGTAGCA
65 TGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAGACCGGACC-AAGGGTTGCAGCAGCA
* ***
15117146 GGACCAGCAGCAGGATTGGTAGCACACAGGGGGGGATCGGGCC
128 GGACC-G-A-C---------AGCACACAGAGGGGGATCGGATA
* * ** *
15117189 GATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCT-CCCGCATGCTCGTTTCGTGGGT
1 GATCCTCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAG-TGCCCGCACCCTCGTTTCATGGGT
15117253 TGGCTTAGGCATACGGAGTTCATTCCA
65 TGGCTTAGGCATACGGAGTTCATTCCA
15117280 TGTATAAGGA
Statistics
Matches: 348, Mismatches: 52, Indels: 31
0.81 0.12 0.07
Matches are distributed among these distances:
158 5 0.01
159 231 0.66
160 8 0.02
161 2 0.01
162 1 0.00
170 3 0.01
171 98 0.28
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GATCCTCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGTGCCCGCACCCTCGTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACCAGACCGGACCAAGGGTTGCAGCAGCAGGA
CCGACAGCACACAGAGGGGGATCGGATA
Found at i:15118012 original size:159 final size:157
Alignment explanation
Indices: 15117525--15118120 Score: 484
Period size: 158 Copynumber: 3.8 Consensus size: 157
15117515 ACCTACAGTG
* * * ** * * *
15117525 GGATCGACAGCACGCAGACAGGGATCGGACTAATCCTCGGCTTGCACATTATGCCTCTCCGGTCG
1 GGATCGACAGCACGCAG--GGGGACCGGGCCGATCCTCGGCTTACGCATTATACCTCTCCGGTCG
* * * ** * *
15117590 ACTGAGCGCCCGTACTCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
64 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAG
* *
15117655 ATCGGACCGAACCAAGGGTTGCGGTAGTA
129 ATTGGACCGAACCAAGGGTTGCGGTAGCA
* * * * * * * ** *
15117684 GGATCAATAGCATGCAGGGGGGACCGGGCTGATCC-CTGGCTTGCGCATTTTACCTTTTTGGCCG
1 GGATCGACAGCACGCA-GGGGGACCGGGCCGATCCTC-GGCTTACGCATTATACCTCTCCGGTCG
* * * * * **
15117748 GCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGTGTTCATTACATG-TCTAA
64 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCCGATCTAA
** * * * ** * * *
15117812 GCCCTAG-CC-AGATCGAGCATTGTGGCAGCG
128 G-ATTGGACCGA-ACCAAGGGTTGCGGTAGCA
* * * * *
15117842 GGA-CTGGCAGCACGTAGATGGGGATCGGGCCGATCCTTGGCTTACGCATTATACCTCTCCGGTT
1 GGATC-GACAGCACGCAG--GGGGACCGGGCCGATCCTCGGCTTACGCATTATACCTCTCCGGTC
* *
15117906 GGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAA
63 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAA
15117971 GATTGGACCGAACCAAGGGTTAG-GGTAGCA
128 GATTGGACCGAACCAAGGGTT-GCGGTAGCA
* * * * *
15118001 GGATCGACAGCACGCAGGGGGCACCGAGTCGATCCTCGACTTACGCATTCTACCTCTCCGATCGG
1 GGATCGACAGCACGCAGGGGG-ACCGGGCCGATCCTCGGCTTACGCATTATACCTCTCCGGTCGG
* * * * * *
15118066 CTAAGCGCTCGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
65 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
15118121 ATGTCTAAGC
Statistics
Matches: 332, Mismatches: 90, Indels: 31
0.73 0.20 0.07
Matches are distributed among these distances:
157 8 0.02
158 191 0.58
159 129 0.39
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GGATCGACAGCACGCAGGGGGACCGGGCCGATCCTCGGCTTACGCATTATACCTCTCCGGTCGGC
TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGAT
TGGACCGAACCAAGGGTTGCGGTAGCA
Found at i:15118307 original size:185 final size:184
Alignment explanation
Indices: 15117945--15118511 Score: 537
Period size: 185 Copynumber: 3.0 Consensus size: 184
15117935 GTTGACTTAG
** * *
15117945 GCATACGGAGTTCATTCCC-GATCTAAGATTGGACCGAACCAAGGGTTAGGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGAC
* * * *
15118009 AGCACGCAGGGGGCACCGAGTCGATCCTCGACTTACGCATTCTACCTCTCCGATCGGCTAAGCGC
65 AGAACGCAGGGGGCACCGAGTCGATCCCCGACTTACGAATTCTACCTCTCCGATCGGCTAAACGC
* *
15118074 TCGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAA
* * * **
15118129 GCATATGGAGTTCATTCTCAGTCTATGATCAGACCGGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGACA
* * * * ** * * * *
15118194 GAACGTAGGGGTGGACCTG-GTCGGTCCCCGGCTTGTGAATTTTGCCTCTCTGATCGGTTAAACG
66 GAACGCAGGGG-GCACC-GAGTCGATCCCCGACTTACGAATTCTACCTCTCCGATCGGCTAAACG
* ** * *
15118258 CCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATATCTAA
129 CCCGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAA
** * *
15118314 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATC-G--
* * * * * *
15118379 ACAGGACCGACAGCATGCAGGAGGAGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGA
63 ACA-GA---AC-GCA-G--GG-GG-CACCGAGTCGATCCCCGACTTACGAATTCTACCTCTCCGA
* * * *** *
15118444 -CTGGCTGAACGCCCGCACACTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATC
118 TC-GGCTAAACGCCCGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATATC
15118508 TAA
182 TAA
15118511 G
1 G
15118512 ACCCAGTCGA
Statistics
Matches: 311, Mismatches: 54, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
184 63 0.20
185 140 0.45
186 2 0.01
188 3 0.01
189 2 0.01
192 2 0.01
193 2 0.01
194 1 0.00
196 5 0.02
197 91 0.29
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGCAGGATCGACA
GAACGCAGGGGGCACCGAGTCGATCCCCGACTTACGAATTCTACCTCTCCGATCGGCTAAACGCC
CGCACGCTCGTTACGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAA
Found at i:15118699 original size:26 final size:26
Alignment explanation
Indices: 15118669--15118721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15118659 GTTGACTTAG
15118669 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15118695 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15118721 G
1 G
15118722 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15119433 original size:170 final size:170
Alignment explanation
Indices: 15119064--15119434 Score: 381
Period size: 170 Copynumber: 2.2 Consensus size: 170
15119054 GGGTTACGGT
* * * * * * * * *
15119064 AGCAAGATCGACAGTACACAGGAAGGGATCGGGTCGATCCCCGGCTTACGGATTCTGCCTCTCTG
1 AGCAGGATCGACAGCACGCA-GAGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCG
* * * *
15119129 GCCAGTTGAGCACCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCACAGTC
65 GCCAGCTAAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTC
* *** * * *
15119194 TAAGATTGGATCGGACTGAGGGTTGCAGTAACAGGACCAGT
130 TAACACCAGATCGGACTAAGGGTTGCAGCAACAGGACCAGC
15119235 AGCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGG
1 AGCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGG
* * * * *
15119300 TCGGCTAAGCTCCTGCACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTTTATTC-CATGTC
66 CCAGCTAAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCACA-GTC
* ** *
15119364 TAACCCCAG-TCGGA-TCAAGGGTTGTGGCAGCAGGACC-GAC
130 TAACACCAGATCGGACT-AAGGGTTGCAGCAACAGGACCAG-C
* * *
15119404 AGCGGGATCGGCAGCATGCAGAGGGGGACCG
1 AGCAGGATCGACAGCACGCAGA-GGGGACCG
15119435 ATGGATCCCT
Statistics
Matches: 164, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
168 2 0.01
169 42 0.26
170 103 0.63
171 17 0.10
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.22
Consensus pattern (170 bp):
AGCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGG
CCAGCTAAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCT
AACACCAGATCGGACTAAGGGTTGCAGCAACAGGACCAGC
Found at i:15121147 original size:26 final size:25
Alignment explanation
Indices: 15121103--15121154 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15121093 GTTGACTTAG
15121103 GCATACGGATTCATCCCCAGTCTAA
1 GCATACGGATTCATCCCCAGTCTAA
*
15121128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGA-TTCATCCCCAGTCTAA
15121154 G
1 G
15121155 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGGATTCATCCCCAGTCTAA
Found at i:15121607 original size:158 final size:155
Alignment explanation
Indices: 15121128--15121661 Score: 473
Period size: 158 Copynumber: 3.4 Consensus size: 155
15121118 CCCAGTCTAA
* * * * *
15121128 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATTGGACCGAAGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCAACA
* * * * * *
15121193 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTTTCTGACCGGTTGAGCGCC
65 GCACGCAGGGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCG-CTGGTTGAGCGCC
* * *
15121258 TGCACGC-CTATTTCGTGGGTTGGCTTAG
128 CGCACGCTC-GTTTCATGGGTTGGCTTAG
* ** * * * * *
15121286 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGTAGCGGGACCAG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACT-GAGGGTTGTGGCAGCAGGATCAA
* * ** * * *
15121349 CAGCACGCAGAGGGAGACCGGGTCGATCCCCGACTTGCGCATTAGGCCTC-CTCGGTCGGCTCAG
63 CAGCACGCAG-GGGGGACCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTC-CGCT-GGTTGAG
* * * * *
15121413 CACCCGTATGCTCGTTTCATGGGTTGACTTAT
124 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
15121445 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACTGAGGGTTATGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCAACA
* **
15121510 GCACACAGGGGGGACCAAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGCTGGTTGAGCGCC
65 GCACGCAGGGGGGACCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCC-GCTGGTTGAGCGCC
15121575 CGCACGCTCGTTTCATGGGTTGGCTTAG
128 CGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
15121603 GCATACGGAGTTCATTCCATGTGTAAGCCCCGGTCGGAGTGAGGGTTGTGGCAGTAGGA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGA
15121662 CTGGTAGCGG
Statistics
Matches: 291, Mismatches: 70, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
157 6 0.02
158 167 0.57
159 112 0.38
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCAACAG
CACGCAGGGGGGACCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGCTGGTTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15122001 original size:26 final size:26
Alignment explanation
Indices: 15121971--15122022 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15121961 GTTGGCTTAG
15121971 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15121997 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15122023 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15122737 original size:26 final size:26
Alignment explanation
Indices: 15122707--15122759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15122697 GTTGACTTAG
15122707 GCATAAAGAGTTCATCCCTAGTCTAA
1 GCATAAAGAGTTCATCCCTAGTCTAA
** *
15122733 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAAGAGTTCATCCCTAGTCTAA
15122759 G
1 G
15122760 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAAGAGTTCATCCCTAGTCTAA
Found at i:15123051 original size:159 final size:156
Alignment explanation
Indices: 15122733--15123266 Score: 536
Period size: 158 Copynumber: 3.4 Consensus size: 156
15122723 CCTAGTCTAA
** * * * *
15122733 GCATACGGAGTTCATTCC-TAGTCTAAGATC-GGACTGGACCGAGGGTTGTGGTAGCAGGATCAG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAAG-CCGGACCGA-GGTTGTGGCAGCAGGATCGG
* * * * * *
15122796 CAGCACGCAGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGATTTAGTG
63 CAGCACGCA-AGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCG
* * *
15122861 CCCT-TACGCCCGTTTCGTGGGTTGGCATAG
127 -CCTGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15122891 GCATACGGAGCTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGTTGTGGCAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCG-AGGTTGTGGCAGCAGGATCGGCA
* * * * * *
15122956 GCACGTAAAGGGAGATTGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAACGC
65 GCACG-CAAGGG-GATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGC
*
15123021 CTGAACGCTCGTTTCGTGGGTTGACTTAG
128 CTGAACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * *
15123050 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGTGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAAGCCGGACCGAG-GTTGTGGCAGCAGGATCGGC
* ** * * *
15123114 AGCACGCAAGCGGGATCGGGTCGGCCCCCGGCTTACGCATTCTGCCTCTCCCACCGACTGAGCGC
64 AGCACGCAAG-GGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGC
* * *
15123179 CCGCACGCTCGTTTCGTGGGTTGGCTTGG
128 CTGAACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15123208 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATTATGGCAGCAGGA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCGAGG-TTGTGGCAGCAGGA
15123267 CTGACAACGG
Statistics
Matches: 306, Mismatches: 59, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 177 0.58
159 122 0.40
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCGAGGTTGTGGCAGCAGGATCGGCAG
CACGCAAGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCTG
AACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15123211 original size:158 final size:156
Alignment explanation
Indices: 15122733--15123391 Score: 529
Period size: 158 Copynumber: 4.1 Consensus size: 156
15122723 CCTAGTCTAA
** *
15122733 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCAGGATC-AG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGGACCGA-GGTTGTGGTAGCAGGATCGA-
* * * * *
15122796 CAGCACGCAGGGGGGA-CTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGATTTAGT
63 CAGCACGCA-AGGGGATC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGC
** * *
15122860 GCCCTTACGCCCGTTTCGTGGGTTGGCATAG
126 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
15122891 GCATACGGAGCTCATTCCATGTCTAAGCCCTAGCCGGACCGAAGGTTGTGGCAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCG-AGGTTGTGGTAGCAGGATCGACA
* * * * * * *
15122956 GCACGTAAAGGGAGATTGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAACGC
65 GCACG-CAAGGG-GATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGC
* *
15123021 CTGAACGCTCGTTTCGTGGGTTGACTTAG
128 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* *
15123050 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGTGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAG-GTTGTGGTAGCAGGATCGAC
** * * *
15123114 AGCACGCAAGCGGGATCGGGTCGGCCCCCGGCTTACGCATTCTGCCTCTCCCACCGACTGAGCGC
64 AGCACGCAAG-GGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGC
* *
15123179 CCGCACGCTCGTTTCGTGGGTTGGCTTGG
128 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
15123208 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATTATGGCAGCAGGACTGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGG--T-T-G-TG--GTA--G-C-
* * * * *
15123273 ACGGGATCGACAGCACGCAAGGGGGACCGGG-CTGATCCTCAGCTTGCGCATTATGCCTCTTCGA
55 A--GGATCGACAGCACGCAA-GGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGA
** * * * * *
15123337 CCGGTTGAGTGCCCGCACGCTCGTTTTG-GGGTTGACTTAG
116 CCGACTCAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
15123377 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
15123392 CCCCAATGTA
Statistics
Matches: 398, Mismatches: 78, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 162 0.41
159 123 0.31
160 4 0.01
161 1 0.00
162 1 0.00
164 2 0.01
166 1 0.00
167 1 0.00
168 1 0.00
169 25 0.06
170 72 0.18
171 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGTTGTGGTAGCAGGATCGACAG
CACGCAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCG
AACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15124091 original size:26 final size:26
Alignment explanation
Indices: 15124062--15124112 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15124052 GTTGACTTGG
15124062 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
* * *
15124088 CATATGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
15124113 GATTGTACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:15124984 original size:26 final size:26
Alignment explanation
Indices: 15124955--15125007 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15124945 GTTGACTTAG
*
15124955 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15124981 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15125007 G
1 G
15125008 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15125458 original size:159 final size:156
Alignment explanation
Indices: 15124981--15125472 Score: 434
Period size: 160 Copynumber: 3.1 Consensus size: 156
15124971 CCCAGTCTAA
* * ** * * * *
15124981 GCATACGTAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAAGGTTGCGGCAGCACGATCG-CA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACA
* * * * *
15125045 GCACGCAGAGGGGACTGAGTCGTTCCCCGACTTACGAATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGAC-G-GTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
*
15125110 CGCACGCCCGTTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * ** *
15125138 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCTA-ACCAGACCGAGGGTTGTGACAGCGGGACCCG
1 GCATACGGAGTTCATTTCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCGACAGCAAGA-TCG
* * * * * ** *
15125201 ACAGCACGCATAGTGGGATCGGATCGATCCCCGGCTTTA-ACATTATGCGTCTCCAACCGGCTCA
63 ACAGCACGCA-GGGGGGA-CGG-TCGATCCCCGGC-TTACGCATTCTGCCTCTCCGGCCGGCTGA
* * * * ** ***
15125265 GCACCTGAACGCTTGTTTTGTGGGTTCATTTAG
124 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
15125298 GCATACGGAGTTCATTTCCAGTCTAAGATCAGATCAGACCGAGGGTTACGCCAGCAAGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACA
* * * *
15125363 GTACACAGGGGAGGACCAGGTCGGTCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
66 GCACGCAGGGG-GGA-C-GGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
15125428 CCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
15125457 GCATACAGAGTTCATT
1 GCATACGGAGTTCATT
15125473 CCATGTATAA
Statistics
Matches: 252, Mismatches: 70, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
156 4 0.02
157 40 0.16
158 7 0.03
159 93 0.37
160 99 0.39
161 9 0.04
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACA
GCACGCAGGGGGGACGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15125726 original size:196 final size:197
Alignment explanation
Indices: 15125349--15125731 Score: 565
Period size: 196 Copynumber: 1.9 Consensus size: 197
15125339 AGGGTTACGC
* * * *
15125349 CAGCAAGATCGACAGTACACAGGGGAGGACCAGGTCGGTCCCTGGCTTACGCATTCTGCCTCTCC
1 CAGCAAGATCGACAGCACACAGGGGAGGACCAGCTCGATCCCCGGCTTACGCATTCTGCCTCTCC
* **
15125414 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
66 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAAAT
* * *
15125479 ATAAGCATATGGAGTTCATTCCCCGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACC
131 ATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGACC
15125544 AG
196 AG
* * *
15125546 CAGCAGGATCGACAGCACACAGGGG-GGATCGAGCT-GATCCCCGGCTTACGTATTCTGCCTCTC
1 CAGCAAGATCGACAGCACACAGGGGAGGA-CCAGCTCGATCCCCGGCTTACGCATTCTGCCTCTC
* * *
15125609 CGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCA-TCCACA
65 CGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCA-A
* *
15125673 ATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGACA
129 ATATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACA
15125732 ATAGGATCGA
Statistics
Matches: 166, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
195 4 0.02
196 135 0.81
197 27 0.16
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (197 bp):
CAGCAAGATCGACAGCACACAGGGGAGGACCAGCTCGATCCCCGGCTTACGCATTCTGCCTCTCC
GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAAAT
ATAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGACC
AG
Found at i:15126045 original size:26 final size:26
Alignment explanation
Indices: 15125996--15126048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15125986 GTTAGCTTAG
*
15125996 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15126022 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15126048 G
1 G
15126049 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15126748 original size:26 final size:26
Alignment explanation
Indices: 15126718--15126770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15126708 GTTGACTTAG
15126718 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15126744 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15126770 G
1 G
15126771 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15126951 original size:26 final size:26
Alignment explanation
Indices: 15126915--15126967 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15126905 GTTGACTTTG
* *
15126915 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
*
15126941 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
15126967 G
1 G
15126968 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:15127630 original size:26 final size:26
Alignment explanation
Indices: 15127600--15127652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15127590 GTTGACTTAG
*
15127600 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAAAGTTCATTC-CCAGTCTAA
15127626 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15127652 G
1 G
15127653 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15128132 original size:26 final size:26
Alignment explanation
Indices: 15128102--15128152 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15128092 TTAGCTTAGG
15128102 CATAC-GATGTTCATT-CCATGTCTAAC
1 CATACGGA-GTTCATTCCCA-GTCTAAC
15128128 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15128153 GATCAAACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:15128510 original size:26 final size:26
Alignment explanation
Indices: 15128480--15128532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15128470 GTTGACTTAG
15128480 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15128506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15128532 G
1 G
15128533 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15129012 original size:26 final size:26
Alignment explanation
Indices: 15128982--15129034 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15128972 GTTGGCTTAG
15128982 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
15129008 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15129034 G
1 G
15129035 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15129223 original size:26 final size:26
Alignment explanation
Indices: 15129192--15129244 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15129182 GTTGGCTTAG
15129192 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
15129218 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15129244 G
1 G
15129245 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15130626 original size:26 final size:26
Alignment explanation
Indices: 15130590--15130639 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15130580 GTGGGTTGAC
*
15130590 TTAAGCATACGGAGTTCATCCCCAGT
1 TTAAGCATACGAAGTTCATCCCCAGT
* *
15130616 TTAAGTATACGAAGTTCATTCCCA
1 TTAAGCATACGAAGTTCATCCCCA
15130640 ATCTAAGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
TTAAGCATACGAAGTTCATCCCCAGT
Found at i:15130646 original size:26 final size:26
Alignment explanation
Indices: 15130591--15130646 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
15130581 TGGGTTGACT
* * *
15130591 TAAGCATACGGAGTTCATCCCCAGTT
1 TAAGCATACGAAGTTCATCCCCAATC
* *
15130617 TAAGTATACGAAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATCCCCAATC
15130643 TAAG
1 TAAG
15130647 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAATC
Found at i:15130949 original size:159 final size:158
Alignment explanation
Indices: 15130660--15130951 Score: 336
Period size: 159 Copynumber: 1.8 Consensus size: 158
15130650 GAACCAGACC
* * **
15130660 GAGGGTTACGGCAGCAGGATCAGCAGCACGCAGGGGGGACTGGGCTGATCCTCAACTTGCGCATT
1 GAGGGTTACGGCAGCAGGATCAGCAGCACGCAGGGGGGACCGGGCCGATCCTCAACTTAAGCATT
* * * * * * **
15130725 TTGCCTCTTCGGTCGGCTGTGCGCCCGCACGTCCGTTTCGTGGGTTGGATTAGGCATAGGGAGTT
66 ATGCCTCTTCGGCCGGCTGAGCGACCGCACGTCCATTTCGTGGGTTGAATTAGGCATACAGAGTT
15130790 CATTCCATGTCTAAGCCCCAGCTGTGCT
131 CATTCCATGTCTAAGCCCCAGCTGTGCT
** * * **
15130818 GAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTAAGCAT
1 GAGGGTTACGGCAGCAGGATCAGCAGCACGCAG-GGGGGACCGGGCCGATCCTCAACTTAAGCAT
* * * * *
15130883 TATGCCTCTTCGGCCGGTTGAGTGACTGCATGAT-CATTTCGTGGGTT-AACTTAGGCATACATA
65 TATGCCTCTTCGGCCGGCTGAGCGACCGCACG-TCCATTTCGTGGGTTGAA-TTAGGCATACAGA
15130946 GTTCAT
128 GTTCAT
15130952 CCCTAGTCTA
Statistics
Matches: 108, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
158 30 0.28
159 77 0.71
160 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.25
Consensus pattern (158 bp):
GAGGGTTACGGCAGCAGGATCAGCAGCACGCAGGGGGGACCGGGCCGATCCTCAACTTAAGCATT
ATGCCTCTTCGGCCGGCTGAGCGACCGCACGTCCATTTCGTGGGTTGAATTAGGCATACAGAGTT
CATTCCATGTCTAAGCCCCAGCTGTGCT
Found at i:15131135 original size:184 final size:185
Alignment explanation
Indices: 15130819--15131185 Score: 409
Period size: 184 Copynumber: 2.0 Consensus size: 185
15130809 AGCTGTGCTG
*** **
15130819 AGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTAAGCATT
1 AGGGTTGTGGCAGCAGGATCAACAGCACGCAGAGGGGGACCAAGCCGATCCTCGGCTTAAGCATT
* * * * *
15130884 ATGCCTCTTCGGCCGGTTGAGTGACTGCATGATCATTTCGTGGGTTAACTTAGGCATACATAGTT
66 ATGCCTCTTCGACCGGCTGAGTCACCGCACGATCATTTCGTGGGTTAACTTAGGCATACATAGTT
* * * * *
15130949 CATCCCTAGT-CTACGCTTACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACTA
131 CATCCC-AGTACTAAGCATACAAAGATCATTCCCAGTCTAAGATCAGACCGGACTA
* * **
15131004 AGGGTTGTGGCAGCAGGATCAACAGCACGCAG-GGGGGATCAAGTCGATCCTCGGCTTGCGCATT
1 AGGGTTGTGGCAGCAGGATCAACAGCACGCAGAGGGGGACCAAGCCGATCCTCGGCTTAAGCATT
* * ** ** *
15131068 CTGCCTCTTCGACCGGCTGAG-CACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGA-AG
66 ATGCCTCTTCGACCGGCTGAGTCA-CCGCACGATCATTTCGTGGGTTAACTTAGGCATA-CATAG
* * * *
15131131 TTCATTCCATTACTAAGCATACAGAGATCATTCCCAGTCTAGGATCAGACCGGAC
129 TTCATCCCAGTACTAAGCATACAAAGATCATTCCCAGTCTAAGATCAGACCGGAC
15131186 CGAGGGTTAC
Statistics
Matches: 149, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
183 3 0.02
184 116 0.78
185 30 0.20
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (185 bp):
AGGGTTGTGGCAGCAGGATCAACAGCACGCAGAGGGGGACCAAGCCGATCCTCGGCTTAAGCATT
ATGCCTCTTCGACCGGCTGAGTCACCGCACGATCATTTCGTGGGTTAACTTAGGCATACATAGTT
CATCCCAGTACTAAGCATACAAAGATCATTCCCAGTCTAAGATCAGACCGGACTA
Found at i:15131751 original size:159 final size:158
Alignment explanation
Indices: 15131364--15131899 Score: 433
Period size: 159 Copynumber: 3.4 Consensus size: 158
15131354 AAGCATATGG
* ** * *
15131364 AGTTCATTCCCAGTCTAAGATCAGATTGGAATGAGGGTTGCGACAGCAGGATCGATAGCACGTA-
1 AGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
* * * * * *
15131428 GGGGGTACC-GTGCCAGTCCCTAGCTTGTGCATTCTGCATCTCCGATCGGCTGAGCGCCCGCAAG
65 GGGGGGACCAG-GCCAGTCCCGAGCTTGCGCATTATGCATCTCCGAACGGCTCAGCGCCCGCAAG
* * * *
15131492 CCCGTTTCATGGGTTGGCTTAGGCATAGGG
129 CCCGTTTCATGGATTGACTTAGGCATACGA
** * * * * *
15131522 AGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGTA
1 AGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
* * *
15131586 GAGGGGGACCAGGCC-GATCCTCGA-CTTGCGCATTATGCCTCTTC-AACAGGCTCAGCGCCCGC
64 GGGGGGGACCAGGCCAG-TCC-CGAGCTTGCGCATTATGCATCTCCGAAC-GGCTCAGCGCCCGC
* *
15131648 ACGCTCGTTTCATGGATTGAC-TACGGCATACGA
126 AAGCCCGTTTCATGGATTGACTTA-GGCATACGA
* * *
15131681 AGTTTATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
1 AGTTCATTCC-AGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
* * * * * * * * * *
15131746 GGGGGGACCAGGTCAGTCCCTG-GCTTACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACG
65 GGGGGGACCAGGCCAGTCCC-GAGCTTGCGCATTATGCATCTCCGAACGGCTCAGCGCCCGCAAG
* * * * *
15131810 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
129 CCCGTTTCATGGATTGACTTAGGCATACGA
** * * * * *
15131840 AGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCA
1 AGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
15131900 GGATCGACAA
Statistics
Matches: 301, Mismatches: 60, Indels: 33
0.76 0.15 0.08
Matches are distributed among these distances:
157 3 0.01
158 54 0.18
159 232 0.77
160 12 0.04
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGG
GGGGGACCAGGCCAGTCCCGAGCTTGCGCATTATGCATCTCCGAACGGCTCAGCGCCCGCAAGCC
CGTTTCATGGATTGACTTAGGCATACGA
Found at i:15132269 original size:26 final size:26
Alignment explanation
Indices: 15132231--15132283 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15132221 GTTGAGATAG
*
15132231 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15132257 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15132283 G
1 G
15132284 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15132786 original size:26 final size:26
Alignment explanation
Indices: 15132739--15132788 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15132729 GGCTTAGGCG
*
15132739 TACGGAGTTCATTCCATTTCTAAGCA
1 TACGGAGTTCATTCCATATCTAAGCA
15132765 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
15132789 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCA
Found at i:15133123 original size:26 final size:26
Alignment explanation
Indices: 15133093--15133145 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15133083 GTTGACTTAG
*
15133093 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15133119 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15133145 G
1 G
15133146 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15134569 original size:183 final size:183
Alignment explanation
Indices: 15134302--15134708 Score: 559
Period size: 183 Copynumber: 2.2 Consensus size: 183
15134292 GCTTGTTTTG
*
15134302 TGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAA
* **
15134367 GATCAGACCAGACCGAGGGTTGC-AGCAGCAGGATTGACAGCACGCTGGGGGACCGGACCGATCC
66 GATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATCGACAGCACGCAAGGGGACCGGACCGATCC
* * *
15134431 CCGACTTGCGCATTCTACCTCTCCGGCC-AGCTAAGCGCCCGCACGCTCATTTCA
130 CCGACTTGCGCATTCTACCTCTCCGGCCGA-CTAAGCACCCACACGCCCATTTCA
* * *
15134485 TGGGTTGGCTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAT
1 TGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAA
* * * *
15134550 GATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGGGGACCGGGCCGATCCC
66 GATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGACCGGACCGATCCC
* * * * * *
15134615 CGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCACACGCCCGTTTCG
131 CGACTTGCGCATTCTACCTCTCCGGCCGACTAAGCACCCACACGCCCATTTCA
* * *
15134668 TGGGTTCACTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 TGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGC
15134709 CCCAGCCGAA
Statistics
Matches: 197, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
182 3 0.02
183 192 0.97
184 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (183 bp):
TGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGACCGGACCGATCCC
CGACTTGCGCATTCTACCTCTCCGGCCGACTAAGCACCCACACGCCCATTTCA
Found at i:15134818 original size:159 final size:159
Alignment explanation
Indices: 15134590--15135020 Score: 614
Period size: 159 Copynumber: 2.7 Consensus size: 159
15134580 GGATCGATAG
* *
15134590 CACGCA-A-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACC
1 CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
**
15134653 CACACGCCCGTTTCGTGGGTTCACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
66 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* *
15134718 ACCGAGGGTTGTGGTAGCGGGACCGGCAG
131 ACCGAGGGTTGTGGTAGCGAGACCGGCAA
* * *
15134747 CATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGTGCC
1 CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* * * * * *
15134812 CCCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCTATGTGTAAGCCCTAGCCGA
66 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
*
15134877 ACCGAGGGTTGTGGTAGCGAGACTGGCAA
131 ACCGAGGGTTGTGGTAGCGAGACCGGCAA
* * * * *
15134906 CACGCAGAGGGAGACTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCC
1 CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
** * * *
15134971 TGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
15135021 GCTGGTGCTG
Statistics
Matches: 240, Mismatches: 32, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
157 5 0.02
158 1 0.00
159 234 0.98
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (159 bp):
CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
ACCGAGGGTTGTGGTAGCGAGACCGGCAA
Found at i:15135738 original size:26 final size:26
Alignment explanation
Indices: 15135688--15135740 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15135678 GTTGACTTAG
*
15135688 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
*
15135714 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
15135740 G
1 G
15135741 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:15135943 original size:158 final size:158
Alignment explanation
Indices: 15135747--15136217 Score: 534
Period size: 159 Copynumber: 3.0 Consensus size: 158
15135737 TAAGATCAGA
* ** * *
15135747 TCGGACCGAGGGTTGCGATAGTAGGATCGACAGCACGTAG-GGAGGACCGAGCTGATCCCCGGCT
1 TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGAGC-GATCCCCGGCT
* * * * *
15135811 TGTGCATTCTGCCTCTCCGGCCGACTGAGTGCTCACACGCCCGTTTCATGGGTTCGTTTAGGCAT
65 TGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCAT
15135876 AGGGAGTTCATTCCATGTCTAAGCCCCAG
130 AGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
15135905 TTGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACC-AGGCCAATCCCCGGC
1 TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGA-G-CGATCCCCGGC
* * * * * *
15135969 TTGTGCAGTGTTCCTCTCCGGCCGGCTAAGCGCCCCCACACCCGTTTCATGGGTTGGCTTAGGCA
64 TTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCA
*
15136034 TAGGGAGTTCATTCTATGTCTAAGCCCCAG
129 TAGGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * * * * *
15136064 TCAGACAAAGAGTTATGGCAGCGGGA-CTGACAGCACGTAGTGGGGGACCGGGGCGATCCCCGGC
1 TCGGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGTAGAGGGGGACC-GAGCGATCCCCGGC
* * * * ** * * *
15136128 TTGCGTATTTTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTAATGGGTTGGCTTAGCCA
64 TTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCA
*
15136193 TACGGAGTTCATTCCATGTCTAAGC
129 TAGGGAGTTCATTCCATGTCTAAGC
15136218 ATATAGAGTT
Statistics
Matches: 261, Mismatches: 46, Indels: 11
0.82 0.14 0.03
Matches are distributed among these distances:
158 36 0.14
159 223 0.85
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
TCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACCGAGCGATCCCCGGCTT
GTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:15137131 original size:26 final size:26
Alignment explanation
Indices: 15137095--15137147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15137085 GTTGGCTTAG
15137095 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15137121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15137147 G
1 G
15137148 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15137146 original size:184 final size:183
Alignment explanation
Indices: 15136899--15137544 Score: 596
Period size: 184 Copynumber: 3.4 Consensus size: 183
15136889 GCTCGTTTTG
* ** *
15136899 TGGGTTGACCTAGGCATATGGAGTTCATCCCAGTCTAAGCATAC-GATGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACGGA-GTTCATTCCCAGTCTAA
*
15136963 GATCAGATCGGACCGAGGGTTACAGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCC
65 GATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCC
* ** *
15137028 CTGGCTTGTGCATTTTGCCTTTCCCGTCGGTTGAGCGCCCGTGCGCTCATTTCG
130 CTGGCTTGTGCATTTTGCCTCTCCCGTCGGTTGAGCGCCCGCACGCTCATTTCA
* *
15137082 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15137147 GATCGGA-CTGGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAGTATTTGCATCACGCCGGGGGG
65 GATCAGATC-GGACCGAGGGTTACGGTAGCAGG---ATC-G-A-TA---G---CACGCAGGGGGG
* * ** * * *
15137211 ATCGGGCCAATCCCTGGCTTGCACATTCTACCTCTCCGGTCAGCCTCTCCGATCGGTTGAGTGGC
117 ATCGGGTCGATCCCTGGCTTGTGCATT-T---T-GCC--T----CTC-CCG-TCGGTTGAGCGCC
*
15137276 TGCACGCTCATTTCA
169 CGCACGCTCATTTCA
* * *
15137291 AGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACAGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * **
15137356 GATC-GAATCGGACCGAGGGTTACGGCAGTAGGATCGGCAGCATGCAGGGGGGACCAAGTCGATC
65 GATCAG-ATCGGACCGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATC
** * *
15137420 CCTGGCTTGTGCATTTTGCCTCTCCAATCGGTAGAGCACCCGCACGCTCATTTCA
129 CCTGGCTTGTGCATTTTGCCTCTCCCGTCGGTTGAGCGCCCGCACGCTCATTTCA
* * * * *
15137475 TGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCATATGGAGTTCATTCCCAATCTAA
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAA
15137540 GATCA
65 GATCA
15137545 TACCAAACCG
Statistics
Matches: 371, Mismatches: 59, Indels: 64
0.75 0.12 0.13
Matches are distributed among these distances:
183 30 0.08
184 137 0.37
185 3 0.01
186 3 0.01
187 2 0.01
188 1 0.00
189 1 0.00
190 3 0.01
192 2 0.01
193 2 0.01
196 35 0.09
197 31 0.08
200 2 0.01
201 2 0.01
203 2 0.01
205 1 0.00
206 2 0.01
207 2 0.01
208 4 0.01
209 102 0.27
210 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (183 bp):
TGGGTTGACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCC
TGGCTTGTGCATTTTGCCTCTCCCGTCGGTTGAGCGCCCGCACGCTCATTTCA
Found at i:15137333 original size:26 final size:26
Alignment explanation
Indices: 15137304--15137356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15137294 GTTGACTTAG
15137304 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15137330 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15137356 G
1 G
15137357 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15138037 original size:26 final size:26
Alignment explanation
Indices: 15138000--15138052 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15137990 GTTGGCTTAG
15138000 GCATACGAAGTTCAAT-CCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
* *
15138026 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
15138052 G
1 G
15138053 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:15138759 original size:26 final size:26
Alignment explanation
Indices: 15138723--15138775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15138713 GTTGACTTAG
*
15138723 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15138749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15138775 G
1 G
15138776 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15139190 original size:160 final size:158
Alignment explanation
Indices: 15138812--15139252 Score: 533
Period size: 160 Copynumber: 2.8 Consensus size: 158
15138802 GTAGGATCGG
*
15138812 CAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCG
1 CAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
15138877 CCCGCACGCCTGTTTCGTGGGTTCGTTTAGGCAT-GGGAGTTCATTCCATGTCTAAGCCCCAGTC
66 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
** ** * *
15138941 AGACCGAGGGTTGTGGCAGCGGGACAGG
131 AGACAAAAAGTTATGGCAGCGGGACAGA
* * ** ** *
15138969 CAGCACGTAGAGGGGGACCGAGTCGATCCCCGGCTTGTGCATTGTTACTCTCCTATCGGCTGAAC
1 CAGCACGTAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
15139034 GCCCCCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCTATGTCTAAGCCCCAGT
65 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * *
15139099 CGGATAAAAAGTTATGGCAAGCGGGACCGA
130 CAGACAAAAAGTTATGGC-AGCGGGACAGA
* * * * *
15139129 CAGCACGCAGTGGGGGACCGGGCCGATCTCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGC
1 CAGCACGTAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * * * * *
15139194 ACCCGCACACTCGTTTCATAGGTTGGCTTGGGCATATGGAGTTCATTCCATGTCTAAGC
65 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15139253 ATACGGAGTT
Statistics
Matches: 235, Mismatches: 46, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
157 10 0.04
158 76 0.32
159 39 0.17
160 110 0.47
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCG
CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
AGACAAAAAGTTATGGCAGCGGGACAGA
Done.