Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 119 of 402
Found at i:15139255 original size:26 final size:26
Alignment explanation
Indices: 15139225--15139277 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15139215 GTTGGCTTGG
*
15139225 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15139251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15139277 G
1 G
15139278 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15139977 original size:26 final size:26
Alignment explanation
Indices: 15139948--15140000 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15139938 GTTGACCTAG
*
15139948 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15139974 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15140000 G
1 G
15140001 TCGGATCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15140370 original size:26 final size:26
Alignment explanation
Indices: 15140340--15140392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15140330 GTTGGCTTAG
*
15140340 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15140366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15140392 G
1 G
15140393 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15140776 original size:159 final size:157
Alignment explanation
Indices: 15140406--15141027 Score: 513
Period size: 159 Copynumber: 3.9 Consensus size: 157
15140396 GAATCGAACT
* * * * * * * * *
15140406 GAGGGTTGTGACAGCAGGATCGACAACACACAGGGGGGATCAGGCCGATCCCCAGCTTACGCATT
1 GAGGGTTATGGCAGCAGGACCGACAGCACGCAAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATT
* * * *** * * * **
15140471 CTGCCTCTCCGGTTGGCTGAGCGTCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
65 CTGCCTCTCCGATCGGCTAAGTACCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTT
* * * *
15140536 CATTCCAAGTCTAAGCCCCAGCCGAACC
130 CATTCCATGTCTAAGCCCCAACCGGATC
* * * * * * * *
15140564 TAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGATCGGGCTATTCCCCGGCTTGCGTAT
1 GAGGGTTATGGCAGCAGGACCGACAGCACGCA-AGGGGGACCGGCCGA-TCCCCGGCTTGCGCAT
* * * *
15140629 TCTGCCTCTCC-AGTCGGCTAAGTACCCGCACGCTCATTTTACGGGTTGGCTTAGGCATACGGAG
64 TCTGCCTCTCCGA-TCGGCTAAGTACCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACAGAG
15140693 TTCATTCCATGTCTAAGCCCCAACCGGATC
128 TTCATTCCATGTCTAAGCCCCAACCGGATC
* * *
15140723 GAGGGTTATGGCAACAGGACCGACAGCACGCAAAGGGGGACCGAACCGATCCCCGACTTGCGCAT
1 GAGGGTTATGGCAGCAGGACCGACAGCACGC-AAGGGGGACCG-GCCGATCCCCGGCTTGCGCAT
* * **
15140788 TATGCCTCTCCGATCGACTCAACG-A-CCGAACGCTCATTTCATGGGTTAACTTAGGCATACAGA
64 TCTGCCTCTCCGATCGGCT-AA-GTACCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACAGA
** *
15140851 GTTCATTTCCA-GTCTAAG-ATCAGACTGGATC
127 GTTCA-TTCCATGTCTAAGCCCCA-ACCGGATC
* * * * * * * * *
15140882 GAGGGTTACGGTAGCAGGATCGACAGCATGC-AGGATGGGACTGGGTCGGTCCCCGGCTTGTGCC
1 GAGGGTTATGGCAGCAGGACCGACAGCACGCAAGG--GGGAC-CGGCCGATCCCCGGCTTGCGCA
* * * * * *
15140946 TTCTG-CTCTTCGATCGGTTGAGTGCCC-ATACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
63 TTCTGCCTCTCCGATCGGCTAAGTACCCGA-ACGCTCATTTCATGGGTTGGCTTAGGCATACAGA
15141009 GTTCATTCCATGTCTAAGC
127 GTTCATTCCATGTCTAAGC
15141028 ATACGGAGTT
Statistics
Matches: 371, Mismatches: 75, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 10 0.03
158 86 0.23
159 260 0.70
160 13 0.04
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGGGTTATGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTC
TGCCTCTCCGATCGGCTAAGTACCCGAACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCCCCAACCGGATC
Found at i:15141030 original size:26 final size:26
Alignment explanation
Indices: 15141000--15141052 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15140990 GTTGGCTTAG
15141000 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15141026 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15141052 G
1 G
15141053 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15141246 original size:26 final size:26
Alignment explanation
Indices: 15141210--15141262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15141200 GTTGACTTAG
*
15141210 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15141236 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15141262 G
1 G
15141263 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15141644 original size:158 final size:159
Alignment explanation
Indices: 15141296--15141648 Score: 422
Period size: 158 Copynumber: 2.2 Consensus size: 159
15141286 ATAACATGAT
* * * *
15141296 CGGTAGCACGTAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGATTG
1 CGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTG
* ** *
15141360 AGCACCCGCATGCCCATTTCGTGGGTTGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCC
66 AGCACCCACACACCCATTTCATGGGTTGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCC
* * ** * *
15141425 AGCCGGATCGAGGGTTGTGGTAGTGGGAT
131 AGCCGGACCGAGGGTTGTGGCAACGAGAC
* * * * *
15141454 CGGCAGCACACAGAGGGGGACCGGACCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCG-CTG
1 CGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTG
* * * * **
15141518 AGCGCCCACACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCTT
66 AGCACCCACACACCCATTTCATGGGTTGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCC
* *
15141583 AGTCGGACCGCGGGTTGTGGCAACGAGAC
131 AGCCGGACCGAGGGTTGTGGCAACGAGAC
* * *
15141612 CGGTAGCACGCAGAGTGGGACCGGGGCAATCCCCGAC
1 CGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGAC
15141649 CTTCGATCGG
Statistics
Matches: 161, Mismatches: 33, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
158 119 0.74
159 42 0.26
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (159 bp):
CGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGACTG
AGCACCCACACACCCATTTCATGGGTTGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCC
AGCCGGACCGAGGGTTGTGGCAACGAGAC
Found at i:15142415 original size:26 final size:26
Alignment explanation
Indices: 15142386--15142438 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15142376 GTTGGCTTAG
15142386 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15142412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15142438 G
1 G
15142439 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15143143 original size:26 final size:26
Alignment explanation
Indices: 15143107--15143159 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15143097 GTTGACTTAG
15143107 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15143133 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15143159 G
1 G
15143160 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15143589 original size:158 final size:157
Alignment explanation
Indices: 15143133--15143634 Score: 464
Period size: 158 Copynumber: 3.2 Consensus size: 157
15143123 CCCAGTCTAA
* *
15143133 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACC-GAACCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAG-ACCGAGGGTTATGGTAGCAGGATCGA
* * * *
15143196 CAGTACGTAAGGGGGACCGA-ACTGATCCCCGAG-TTGCGCATTCTACTTCTCCGACCGGCTGAG
64 CAGCACGT-AGGGGGATCGAGTC-GATCCCC-AGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
* * * * *
15143259 TGCCCGCAGGCCCATTTCGTGGGTTGGCTTAG
126 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * * * * *
15143291 GCGTAGGGAATTCATTGCATGTCTAAGCCCCAG-CCAAACCGAGGATTGTGGCA-CTGAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTATGGTAGCAG-GATCGA
* ** * * * * **
15143354 CAGCACGCAGAGGGGGATC-AGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCTGCCCAG
64 CAGCACG--TAGGGGGATCGA-GTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
* * *
15143418 CG-CTCGGATGCTCGTTTCGTGGGTTGACTTAG
126 CGCCT-GCACGCTCGTTTCGTGGGTTGGCTTAG
* *
15143450 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTATGGTAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGAC
*
15143514 AGCACGTAGGCGGGATCGAGTCGATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGC
65 AGCACGTAGG-GGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
*
15143579 CTGCACGCTCGTTTCGTGGGTTGGCTTAA
129 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15143608 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15143635 CATACGGAGT
Statistics
Matches: 264, Mismatches: 63, Indels: 34
0.73 0.17 0.09
Matches are distributed among these distances:
157 10 0.04
158 137 0.52
159 112 0.42
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGACA
GCACGTAGGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCT
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15143643 original size:26 final size:26
Alignment explanation
Indices: 15143605--15143660 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15143595 TGGGTTGGCT
*
15143605 TAAGCATATGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
15143631 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15143657 TAAG
1 TAAG
15143661 ATTAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15144323 original size:158 final size:156
Alignment explanation
Indices: 15143850--15144344 Score: 445
Period size: 158 Copynumber: 3.1 Consensus size: 156
15143840 TAACTATATG
* * * *
15143850 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCA
1 GAGTTCA-TCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAAGATCGATAGCACACA
* ** * * * **
15143915 GAGGGGATCGAGTCGATCCCTGGCTTGCGGATTCTGCCTTTCCGGTCGACTGAGCGCCCGCACGC
65 GGGGGGATCGAGTCGATCCCCAGCTTGTGCATTCTGCC-TTCCAGTCGGTTGAGCGCCCGCACGC
**
15143980 TCGTTTCGTGGGTTGGCTTAGGCATAGG
129 TCGTTTCGTGGGTTGGCTTAGGCATACA
* * ** * * * * ** * *
15144008 GAGTTTATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG-TGGGTCTGGTAGCACAC
1 GAGTTCATCCCA-GTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAAGATC-GATAGCACAC
* * * * * * *
15144072 AGAGGGGGATTGGGTCGATCCCCAGCTTGTGCATTATGCCTTCCCGACCGGCTT-AGCACCCGTA
64 AG-GGGGGATCGAGTCGATCCCCAGCTTGTGCATTCTGCCTTCCAG-TCGG-TTGAGCGCCCGCA
* * **
15144136 CGCTCATTTCGTGTGTTGAATTAGGCATACA
126 CGCTCGTTTCGTGGGTTGGCTTAGGCATACA
* * **
15144167 GAGTTCAGTCCCAATCTAAGATCGGATCAGACTAAGGGTTGCGGCAGCAAGATCGATAGCACACA
1 GAGTTCA-TCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAAGATCGATAGCACACA
* * * *
15144232 GGGGGGATCGAGCCGATCCCCAGCTTGTGCATTCTACCTCTCTAGTCGGTTGAGTGCCCGCACGC
65 GGGGGGATCGAGTCGATCCCCAGCTTGTGCATTCTGCCT-TCCAGTCGGTTGAGCGCCCGCACGC
* * *
15144297 TTGTTTCATGGGTTGGCTTAGGCATACC
129 TCGTTTCGTGGGTTGGCTTAGGCATACA
*
15144325 GAGTTCATTCCATGTCTAAG
1 GAGTTCATCCCA-GTCTAAG
15144345 CATACGGAGT
Statistics
Matches: 255, Mismatches: 72, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
157 13 0.05
158 126 0.49
159 108 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GAGTTCATCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAAGATCGATAGCACACAG
GGGGGATCGAGTCGATCCCCAGCTTGTGCATTCTGCCTTCCAGTCGGTTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACA
Found at i:15144348 original size:26 final size:26
Alignment explanation
Indices: 15144318--15144370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15144308 GTTGGCTTAG
15144318 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
15144344 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15144370 G
1 G
15144371 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15144448 original size:710 final size:710
Alignment explanation
Indices: 15143082--15144468 Score: 1752
Period size: 710 Copynumber: 2.0 Consensus size: 710
15143072 AAGCATCTGT
*
15143082 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * * *
15143147 TTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCAGGATCGACAGTACGTAAGGGGGA
66 TTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAAGGGGGA
* * *
15143212 CCGAACTGATCCCCGAGTTGCGCATTCTACTTCTCCGACCGGCTGAGTGCCCGCAGGCCCATTTC
131 CCGAACTGATCCCCGAGTTGCGCATTCTACTTCTCCGACCGACTGAGCGCCCGCACGCCCATTTC
* *
15143277 GTGGGTTGGCTTAGGCGTAGGGAATTCATTGCATGTCTAAGCCCCAGCCAAACCGAGGATTGTGG
196 GTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGATTGTGG
* ** *
15143342 CACTGAGACCGACAGCACGCAGAGGGGGATCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTTC
261 CACTGAGACCGACAGCACACAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCC
* * * * * * * * *
15143407 GACCTGCCCAGCGCTCGGATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
326 GACCGGCCCAGCACCCGGACGCTCATTTCGTGGGTTGAATTAGGCATACAGAGTTCAGTCCCAAT
* * * * ** *
15143472 CTAAGATCAGACCAGATCGAGGGTTATGGTAGCAGGATCAACAGCACGTAGGCGGGATCGAGTCG
391 CTAAGATCAGACCAGATCAAGGGTTACGGCAGCAAGATCAACAGCACACAGGCGGGATCGAGCCG
* * *
15143537 ATCCCCAGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
456 ATCCCCAGCTTGTGCATTCTACCTCTCAGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
** *
15143602 GCTTAAGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGA
521 GCTTAAGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * ** * * *
15143667 CCGGACCGAGGGTTGCTACAGCAAGACCAGCAGCAGGATCGGTAGCACGCAGGGGGGTCCGGGCT
586 CCGGACCGAGGGTTCCGACAGCAAGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCC
*
15143732 GATCCCTGGCTT-GTGCATTCTACCTCTCCAGTCGGCCTCTCCGATCGATTGAGTGCCCGC
651 GATCCCTAGCTTAG-GCATTCTACCTCTCCAGTCGGCCTCTCCGATCGATTGAGTGCCCGC
* **
15143792 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA-CTATATGGAGTTC
1 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC-ATACAGAGTTC
15143856 ATTCCCAGTCTAAGATC-GAACC-AGACCGAGGGTTACGGCAGCAAGATCGACAGCACGC-AGAG
65 ATTCCCAGTCTAAGATCAG-ACCGA-ACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAAG-G
* * * * * **
15143918 GGGATCG-AGTCGATCCCTG-GCTTGCGGATTCTGCCTT-TCCGGTCGACTGAGCGCCCGCACGC
127 GGGACCGAACT-GATCCCCGAG-TTGCGCATTCT-ACTTCTCCGACCGACTGAGCGCCCGCACGC
* * * * * **
15143980 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACCGAGG
189 CCATTTCGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCAAACCGAGG
* * * * * ** ** *
15144045 GTTGTGGCAGTGGGTCTGGTAGCACACAGAGGGGGATTGGGTCGATCCCCAGCTTGTGCATTATG
254 ATTGTGGCACTGAGACCGACAGCACACAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATG
** * *
15144110 CCT-TCCCGACCGGCTTAGCACCCGTACGCTCATTTCGTGTGTTGAATTAGGCATACAGAGTTCA
319 CCTCT-CCGACCGGCCCAGCACCCGGACGCTCATTTCGTGGGTTGAATTAGGCATACAGAGTTCA
* * * * * *
15144174 GTCCCAATCTAAGATCGGATCAGA-CTAAGGGTTGCGGCAGCAAGATCGATAGCACACAGGGGGG
383 GTCCCAATCTAAGATCAGACCAGATC-AAGGGTTACGGCAGCAAGATCAACAGCACACAGGCGGG
* * * *
15144238 ATCGAGCCGATCCCCAGCTTGTGCATTCTACCTCTCTAG-TCGGTTGAGTGCCCGCACGCTTGTT
447 ATCGAGCCGATCCCCAGCTTGTGCATTCTACCTCTC-AGACCGGCTGAGCGCCCGCACGCTCGTT
*
15144302 TCATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
511 TCATGGGTTGGCTTAAGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
* * ** * *
15144367 TAAGATCAGATCGGATCGAGGGTTCCGGTAGCAGGACCAGTAGCAAGATCGACAGCACGCAGGGG
576 TAAGATCAGACCGGACCGAGGGTTCCGACAGCAAGACCAGCAGCAAGATCGACAGCACGCAGGGG
*
15144432 GGACCGAGCCGATCCCTAGCTTAGGCATTCTGCCTCT
641 GGACCGAGCCGATCCCTAGCTTAGGCATTCTACCTCT
15144469 TCGATCGGCT
Statistics
Matches: 572, Mismatches: 94, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
709 10 0.02
710 557 0.97
711 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (710 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAAGGGGGA
CCGAACTGATCCCCGAGTTGCGCATTCTACTTCTCCGACCGACTGAGCGCCCGCACGCCCATTTC
GTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGATTGTGG
CACTGAGACCGACAGCACACAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCC
GACCGGCCCAGCACCCGGACGCTCATTTCGTGGGTTGAATTAGGCATACAGAGTTCAGTCCCAAT
CTAAGATCAGACCAGATCAAGGGTTACGGCAGCAAGATCAACAGCACACAGGCGGGATCGAGCCG
ATCCCCAGCTTGTGCATTCTACCTCTCAGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
GCTTAAGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTCCGACAGCAAGACCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCC
GATCCCTAGCTTAGGCATTCTACCTCTCCAGTCGGCCTCTCCGATCGATTGAGTGCCCGC
Found at i:15144728 original size:26 final size:26
Alignment explanation
Indices: 15144698--15144750 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15144688 GATGACTTAG
*
15144698 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15144724 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15144750 G
1 G
15144751 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15145225 original size:158 final size:156
Alignment explanation
Indices: 15144724--15145215 Score: 495
Period size: 158 Copynumber: 3.1 Consensus size: 156
15144714 CCCAGTCTAA
* * *
15144724 GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
15144789 GCTTGCAGGGGGGACCGAGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTAGCCGGTTGAGTACC
66 GCATGCAGGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCGA-CCGGTTGAGTACC
* *
15144854 CGCACGCCCATTTCGTGGGTTGGCTTAG
130 C-AACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * *
15144882 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCCGGACCGA
1 GCATATGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
15144945 CAGCACGCAGAGGGGGATCGGGCCAATCCTCGCCTTGCGTATTATGCCTCTCTGACCGGCTCAGT
64 CAGCATGCAG-GGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTC-GACCGGTTGAGT
* * *
15145010 ACCCGAACGCTCATTTTGTGGGTTGACTTTG
127 ACCC-AACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
15145041 ACAAACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGCAGCAAGATCGATA
1 GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
15145106 GCATGCAGGGGGGATCGGGTCGGTCC-CTGACTTACGCATTCTGTCTCTTCGATCGGTTGAGTGC
66 GCATGCAGGGGGGATCGGGTCGATCCTC-GACTTGCGCATTCTGCCTC-TCGACCGGTTGAGTAC
15145170 CCATACGCTCATTTCGTGGGTTGGCTTAG
129 CCA-ACGCTCATTTCGTGGGTTGGCTTAG
15145199 GCATATGAAGTTCATTC
1 GCATATGAAGTTCATTC
15145216 GATGTCTAAG
Statistics
Matches: 264, Mismatches: 61, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 131 0.50
159 124 0.47
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCGACCGGTTGAGTACCC
AACGCTCATTTCGTGGGTTGGCTTAG
Found at i:15145439 original size:26 final size:26
Alignment explanation
Indices: 15145388--15145440 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15145378 GTTGACTTAG
**
15145388 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAACCTAA
*
15145414 GCATACGGAGTAT-ATTCCTAACCTAA
1 GCATACGGAGT-TCATCCCTAACCTAA
15145440 G
1 G
15145441 ATCTAATGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAACCTAA
Found at i:15145722 original size:689 final size:692
Alignment explanation
Indices: 15144676--15146177 Score: 1781
Period size: 689 Copynumber: 2.2 Consensus size: 692
15144666 TGCTTGCACG
* * * *
15144676 CTCATTTCATGGGATGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTC
1 CTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT-
* * * * ***
15144741 CCAGTCTAAGATCAGATCGGACCAAGGGTTACGGCAGCAGGATCGACAGCTTGCAGGGGGGACCG
65 CCAATCTAAGATCA-AT-GGATCGAGGGTTACGGCAGCAGGATCGGCAGCACACAGGGGGGACCG
* * ** * * *
15144806 AGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTAGCCGGTTGAGTACCCGCACGCCCATTTCGTG
128 AGTCGATCCCCAGCTTACGCATTCTGCCTCTCTAGCCAGCTGAGTACCCGCACGCCCATTTCATG
* * *
15144871 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCGGATCGAGGGTTGTGGCAG
193 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAG
* * * * *
15144936 CCGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCGCCTTGCGTATTATGCCTCTCTGAC
258 CCGGAACGACAGCACGCAGAGGGGGATCGAGCCAATCCTCGACTTACGTATTATGCCTCTCCGAC
** * *
15145001 CGGCTCAGTACCCGAACGCTCATTTTGTGGGTTGACTTTGACAAACGGAGTTCATTCCCAGTCTA
323 CGGCTCAACACCCGAACGCTCATTTCGTGGGTTGACTTAGACAAACGGAGTTCATTCCCAGTCTA
* * *** * * * * * **
15145066 AGATCAGATCGGATTGAGGGTTGCGGCAGCAAGATCGATAGCATGCAGGGGGGATCGGGTCGGTC
388 AGATCAAACCGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCACTC
* * * * * *
15145131 CCTGACTTACGCATTCTGTCTCTTCGATCGGTTGAGTGCCCATACGCTCATTTCGTGGGTTGGCT
453 CCCGACTTACGCATTCTGCCTCTTCGACCGGTTGAGTGCCCACACGCTCATTCCATGGGTTGGCT
* * * *
15145196 TAGGCATATGAAGTTCATTCGATGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGAGCA
518 TAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGAGCA
** * * *
15145261 GACCGAGGGTTACGGCAGTAAGACCAGCA-A-CAGGATCGAGTGCATGCAAGGGGGGACCGGGTC
583 GACCGAGGGTTACGGCAGTAAGACC-G-ATAGCAGGATCGACAGCACG-AAGGGGGGACCAGGCC
* * *
15145324 AATCCCCGGCTTGCGCATTCTG-C-ATCT-TCAAC-CGC-CCG-TACA
645 AATCCCCGGCTTGCCCATTCTGCCTATCTGTCAACGAGCTCCGACACA
* *
15145366 CTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTAT-ATT
1 CTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGT-TCATT
*
15145430 CCTAACCTAAGATCTAATGGATCGAGGGTTACGGCAGCAGGATCGGCAGCACACAGGGGGGACCG
65 CC-AATCTAAGATC-AATGGATCGAGGGTTACGGCAGCAGGATCGGCAGCACACAGGGGGGACCG
* * * *
15145495 -GGCTGATCCCCAGCTTACGCATTCTGCCTCTCTAGTCAGCTGAGTGCCCGCACGCCCGTTTCAA
128 AGTC-GATCCCCAGCTTACGCATTCTGCCTCTCTAGCCAGCTGAGTACCCGCACGCCCATTTC-A
*
15145559 T-GGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA-CTGAGGGTTGTGG
191 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC-GAGGGTTGTGG
* * * **
15145622 CAG-CGAGAATGACAGCACTCAGTGGGGGATCGAGCTGATCC-CTGACTTACGTATTATGCCTCT
255 CAGCCG-GAACGACAGCACGCAGAGGGGGATCGAGCCAATCCTC-GACTTACGTATTATGCCTCT
* * * *
15145685 CCGACTGGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
318 CCGACCGGCTCAACACCCGAACGCTCATTTCGTGGGTTGACTTAGACAAACGGAGTTCATTCCCA
* **
15145750 GTCTAAGATCAAACCGGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGTTGGGGGGACCGGGC
383 GTCTAAGATCAAACCGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGGC
* * * * * * *
15145815 CACTCCCCGGCTTGCGTATTTTGCCTCTTCGACCGGTTGAGTGGCCGCACGCTCGTTCCATGGGT
448 CACTCCCCGACTTACGCATTCTGCCTCTTCGACCGGTTGAGTGCCCACACGCTCATTCCATGGGT
* *
15145880 TGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
513 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
* * * * * * *
15145945 GATCGGACTGAGGGTTGCGGCAGTAGGACCGATAGTAGGATCGACAGCACGTAGGGGGGACCAGG
578 GAGCAGACCGAGGGTTACGGCAGTAAGACCGATAGCAGGATCGACAGCACGAAGGGGGGACCAGG
* *
15146010 CCAATCCCCGGCTTGCCCATTCTGCCTCTCTGGTCGACTGAGCTCCGACACA
643 CCAATCCCCGGCTTGCCCATTCTGCCTATCT-GTCAAC-GAGCTCCGACACA
** * *
15146062 CTGGTTTCGTCGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
1 CTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
* * * *
15146127 CAAGTCTAAGATCGAACTGGATTGAGGGTTGCGGTAGCAGGATCGGTAGCA
66 CAA-TCTAAGATC-AA-TGGATCGAGGGTTACGGCAGCAGGATCGGCAGCA
15146178 TGCTGAGCGC
Statistics
Matches: 681, Mismatches: 110, Indels: 35
0.82 0.13 0.04
Matches are distributed among these distances:
687 1 0.00
688 42 0.06
689 452 0.66
690 71 0.10
691 2 0.00
692 4 0.01
694 2 0.00
695 6 0.01
696 71 0.10
697 30 0.04
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (692 bp):
CTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
CAATCTAAGATCAATGGATCGAGGGTTACGGCAGCAGGATCGGCAGCACACAGGGGGGACCGAGT
CGATCCCCAGCTTACGCATTCTGCCTCTCTAGCCAGCTGAGTACCCGCACGCCCATTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCCG
GAACGACAGCACGCAGAGGGGGATCGAGCCAATCCTCGACTTACGTATTATGCCTCTCCGACCGG
CTCAACACCCGAACGCTCATTTCGTGGGTTGACTTAGACAAACGGAGTTCATTCCCAGTCTAAGA
TCAAACCGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCACTCCCC
GACTTACGCATTCTGCCTCTTCGACCGGTTGAGTGCCCACACGCTCATTCCATGGGTTGGCTTAG
GCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGAGCAGAC
CGAGGGTTACGGCAGTAAGACCGATAGCAGGATCGACAGCACGAAGGGGGGACCAGGCCAATCCC
CGGCTTGCCCATTCTGCCTATCTGTCAACGAGCTCCGACACA
Found at i:15145938 original size:26 final size:26
Alignment explanation
Indices: 15145890--15145940 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15145880 TGGCTTAGGT
*
15145890 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
15145916 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACGGAGTTCATT-CCATATCTAAG
15145941 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:15146120 original size:26 final size:26
Alignment explanation
Indices: 15146084--15146136 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15146074 GTTGACTTAG
*
15146084 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
15146110 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
15146136 G
1 G
15146137 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:15146124 original size:196 final size:195
Alignment explanation
Indices: 15145785--15146160 Score: 456
Period size: 196 Copynumber: 1.9 Consensus size: 195
15145775 TTGCAGCAGC
* * * ** *
15145785 AGGATCGACAGCACGTTGGGGGGACCGGGCCACTCCCCGGCTTGCGTATTTTGCCTCTTCGACCG
1 AGGATCGACAGCACGTAGGGGGGACCAGGCCAATCCCCGGCTTGCCCATTCTGCCTCTTCGACCG
** * * * * * *
15145850 GTTGAGTGGCCGCACGCTCGTTCCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
66 ACTGAGT-GCCGCACACTCGTTCCATCGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAG
* *
15145915 CATACGGAGTTCATTCCCAA-TCTAAGATCGGA-TCGGACTGAGGGTTGCGGCAGTAGGACCGAT
130 CATACGAAGTTCATT-CCAAGTCTAAGATCGAACT-GGACTGAGGGTTGCGGCAGTAGGACCGAT
15145978 AGT
193 AGT
**
15145981 AGGATCGACAGCACGTAGGGGGGACCAGGCCAATCCCCGGCTTGCCCATTCTGCCTC-TCTGGTC
1 AGGATCGACAGCACGTAGGGGGGACCAGGCCAATCCCCGGCTTGCCCATTCTGCCTCTTC-GACC
* * *
15146045 GACTGAGCT-CCGACACACTGGTTTCGTCGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCT
65 GACTGAG-TGCCG-CACACTCGTTCCATCGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCT
*
15146108 AAGCATACGAAGTTCATTCCAAGTCTAAGATCGAACTGGATTGAGGGTTGCGG
127 AAGCATACGAAGTTCATTCCAAGTCTAAGATCGAACTGGACTGAGGGTTGCGG
15146161 TAGCAGGATC
Statistics
Matches: 152, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
195 9 0.06
196 138 0.91
197 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (195 bp):
AGGATCGACAGCACGTAGGGGGGACCAGGCCAATCCCCGGCTTGCCCATTCTGCCTCTTCGACCG
ACTGAGTGCCGCACACTCGTTCCATCGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGC
ATACGAAGTTCATTCCAAGTCTAAGATCGAACTGGACTGAGGGTTGCGGCAGTAGGACCGATAGT
Found at i:15146666 original size:12 final size:12
Alignment explanation
Indices: 15146629--15146659 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15146619 GGGTTATGGT
*
15146629 AGTAGGACCAGC
1 AGTAAGACCAGC
15146641 AGTAAGACCAGC
1 AGTAAGACCAGC
15146653 AGTAAGA
1 AGTAAGA
15146660 TCGGCAGCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.19, G:0.29, T:0.10
Consensus pattern (12 bp):
AGTAAGACCAGC
Found at i:15146984 original size:158 final size:157
Alignment explanation
Indices: 15146649--15146985 Score: 347
Period size: 158 Copynumber: 2.1 Consensus size: 157
15146639 GCAGTAAGAC
* * * * *
15146649 CAGCAGTAAGATCGGCAGCACGCAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTACCTCTC
1 CAGCAGCAGGATCGACAGCACGCAAGGGGACCGAGTCGATCCCCAGCTTGCGCATTATACCTCTC
* * * * * *
15146714 CGGCCAGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCTTG
66 CGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTA
* *
15146779 TCTAAGCCCCAACTGAACCGAGGGTTG
131 TCTAAGCACCAACAGAACCGAGGGTTG
** * * * *** *
15146806 TGGCAGCGGGACCGACAGCACGCGGAAGGGGATCGAGTCGATCCTTGGCTTGCGCATTATGCCTC
1 CAGCAGCAGGATCGACAGCACGC--AAGGGGACCGAGTCGATCCCCAGCTTGCGCATTATACCTC
* ** *
15146871 TCTGGCTGGCTCAGCGCCCGCACGCTCGTTTC-TGGTTTGACTTAGGCATACGAAGTTCATTCCC
64 TCCGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
** **
15146935 TATCTAAG-ATTAGACCAG-ATTGAGGGTTG
129 TATCTAAGCACCA-A-CAGAACCGAGGGTTG
15146964 CAGCAGCAGGATCGACAGCACG
1 CAGCAGCAGGATCGACAGCACG
15146986 TAGGGGGGAC
Statistics
Matches: 142, Mismatches: 34, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
157 17 0.12
158 64 0.45
159 61 0.43
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CAGCAGCAGGATCGACAGCACGCAAGGGGACCGAGTCGATCCCCAGCTTGCGCATTATACCTCTC
CGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTA
TCTAAGCACCAACAGAACCGAGGGTTG
Found at i:15147480 original size:26 final size:26
Alignment explanation
Indices: 15147441--15147493 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15147431 GTTGACTTAG
*
15147441 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
*
15147467 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
15147493 G
1 G
15147494 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:15148341 original size:159 final size:158
Alignment explanation
Indices: 15148193--15148480 Score: 348
Period size: 158 Copynumber: 1.8 Consensus size: 158
15148183 TGTGGCAGTG
* *
15148193 GGACCGACAGCACGTAGAGGGGGATCGAGCTGATCCCCGGCTTACGCATTATACCT-TTACGGCC
1 GGACCGACAGCACGCAGA-GGGGACCGAGCTGATCCCCGGCTTACGCATTATACCTCTT-CGGCC
* * *
15148257 GGCTCAGCGCTCGA-ATGCTCGTTTAGTGGGTTGACTTAGGCATACTGAGTTCATTCGCA-GTCT
64 GGCTCAGCGC-CCACACGCTCGTTTAGTGGGTTGACTTAGGCATACAGAGTTCATTC-CATGTCT
15148320 AAGATCAGACCAGATCGAGGGTTGCAGCAGCA
127 AAGATCAGACCAGATCGAGGGTTGCAGCAGCA
** * * * * * *
15148352 GGATTGATAGCACGCAGAGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGG
1 GGACCGACAGCACGCAGAGGGGACCGAGCTGATCCCCGGCTTACGCATTATACCTCTTCGGCCGG
* * * * * *
15148417 TTGAGTGCCCACACGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 CTCAGCGCCCACACGCTCGTTTAGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
15148481 CATATGGAGT
Statistics
Matches: 107, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
157 4 0.04
158 87 0.81
159 16 0.15
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GGACCGACAGCACGCAGAGGGGACCGAGCTGATCCCCGGCTTACGCATTATACCTCTTCGGCCGG
CTCAGCGCCCACACGCTCGTTTAGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGA
TCAGACCAGATCGAGGGTTGCAGCAGCA
Found at i:15148704 original size:513 final size:504
Alignment explanation
Indices: 15147339--15148716 Score: 1431
Period size: 513 Copynumber: 2.7 Consensus size: 504
15147329 CCGACAGCGA
* * * * * * * *
15147339 GATCGGCAGCACGCAGAGGGGAACCGTGCTAATCCCCGGTTTGCGCAATATGCCTCTCCGGCCGG
1 GATCGACAGCACGCAGAGGGG-ACCGGGCTGAT-CCCGGCTTACGCATTCTGCCTCTTCGGCCGG
* * * * *
15147404 CTGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG
64 CTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAG
* * ** ** **
15147468 CATACGGACTTCATTCCCAGTCTAAGATTGGATTGGATTGAGGGTTGTGGCAGCAGG-AT---C-
128 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGAATAGACA
* * * * * * * *
15147528 -GA---CAGCACGCAGGGGGGACGGGTCGATCCCCGGCTTGTGCAATCTGCTTCTCCGACCGGCT
193 GGATCGCAGCACGCAGGGGGGACCGGTCGATCCCTGGC--ATGCATTCTGCCTCTCTGGCTGGCT
* *
15147589 GAGCGCCCGCATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCC
256 GAGCACCCGCATGCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * * ***
15147654 CAGCCAGAACGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGAGGGATCGGGCCAATCTTTG
320 CAGCC-GGACGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGAGGGATCGAGCCAATCCCCG
* * * * *
15147719 GCTTGCGCATTATGCCTCGCCGGCTAGCTCAGCGCCCAAACGCTCTTTTCATGCGTTGACTTAGG
384 GCTTACGCATTATACCTCGACGGCCAGCTCAGCGCCCAAACGCTCGTTTCATGCGTTGACTTAGG
* * ** *
15147784 CATATGGAGTTCATTCTCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGTAGCAG
449 CATATGGAGTTCATTCGCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCAG
* * * * * * *
15147840 GATCGACAGCATGTAGGGGGGACCGGG-TCGATCCCCGCATTACGCATTCTACCTTTTCAGCCGG
1 GATCGACAGCACGCAGAGGGGACCGGGCT-GATCCCGGC-TTACGCATTCTGCCTCTTCGGCCGG
* * * *
15147904 CTGAGCGCCCGCACGCTCATTTC-ATGAGTTGGCTTAGGCATACAGAGTTCATTACATTTCTAAG
64 CTGAGCGCCCGCACGCTCGTTTCGTTG-GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * *
15147968 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAAGACCAGTAG
128 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGA--A-TAG
* * *
15148033 -CAGGATCTGTAGCACGTAGGGGGGACCAAGTCGATCCCTGGCTTATGCATTCTGCCTCTCTGGC
190 ACAGGATC-GCAGCACGCAGGGGGGACC-GGTCGATCCCTGGC--ATGCATTCTGCCTCTCTGGC
* ** *
15148097 TGGATGAGCATTCGCATGCCCGTTTCGTGGGTTGGCTTAGGCGTAGGGCA-TTCATTCCATGTCT
251 TGGCTGAGCACCCGCATG-CCGTTTCGTGGGTTGGCTTAGGCATAGGG-AGTTCATTCCATGTCT
* * * * **
15148161 AAGCCCCAACCGGACCAAGGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGGATCGAGCTGA
314 AAGCCCCAGCCGGA-CGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGAGGGATCGAGCCAA
** * * * * *
15148226 TCCCCGGCTTACGCATTATACCTTTACGGCCGGCTCAGCGCTCGAATGCTCGTTT-AGTGGGTTG
378 TCCCCGGCTTACGCATTATACCTCGACGGCCAGCTCAGCGCCCAAACGCTCGTTTCA-TGCGTTG
*
15148290 ACTTAGGCATACT-GAGTTCATTCGCAGTCTAAGATCAGACCAGATC-GAGGGTTGCAGCAGCAG
442 ACTTAGGCATA-TGGAGTTCATTCGCAGTCTAAGATCAGACC-GAACTGAGGGTTGCAGCAGCAG
* * * *
15148353 GATTGATAGCACGCAGAGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGT
1 GATCGACAGCACGCAGAGGGGACCGGGCTGATCC-CGGCTTACGCATTCTGCCTCTTCGGCCGGC
* *
15148418 TGAGTGCCCACACGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
65 TGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
*
15148483 TATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGAATAGCAACA
130 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGAATAG--ACA
* *
15148548 GGATCGGCAGCACGCAGGGGGGACCGGTTCGATCTCTGGCATGCACATTCTGCCTATCTGGCTGG
193 GGATC-GCAGCACGCAGGGGGGACCGG-TCGATCCCTGGCATG--CATTCTGCCTCTCTGGCTGG
* * * * * *
15148613 CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCACGTCTAAGC
254 CTGAGCACCCGCATGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * *
15148678 CCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGCAGC
318 CCCAGCCGGAC-GAGGGTTGTGGCAGTGGGACCGACAGC
15148717 GGGATCGACA
Statistics
Matches: 715, Mismatches: 127, Indels: 58
0.79 0.14 0.06
Matches are distributed among these distances:
499 8 0.01
500 120 0.17
501 17 0.02
503 1 0.00
504 1 0.00
506 1 0.00
508 2 0.00
510 3 0.00
511 4 0.01
512 22 0.03
513 523 0.73
514 13 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (504 bp):
GATCGACAGCACGCAGAGGGGACCGGGCTGATCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGAATAGACAGGA
TCGCAGCACGCAGGGGGGACCGGTCGATCCCTGGCATGCATTCTGCCTCTCTGGCTGGCTGAGCA
CCCGCATGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
GACGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGAGGGATCGAGCCAATCCCCGGCTTACG
CATTATACCTCGACGGCCAGCTCAGCGCCCAAACGCTCGTTTCATGCGTTGACTTAGGCATATGG
AGTTCATTCGCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCAG
Found at i:15148870 original size:26 final size:26
Alignment explanation
Indices: 15148834--15148886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15148824 GTTGACTTAG
15148834 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15148860 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15148886 G
1 G
15148887 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15149313 original size:156 final size:154
Alignment explanation
Indices: 15148860--15149351 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 154
15148850 CCCAGTCTAA
* *
15148860 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAA-GGTTGCGACAGTAGGATCGAC
1 GCATATGGAGTTCATT-CCAGTCTAAGATCGAAC-GGACC-AAGGGTTGCGAC-GCAGGATCGAC
* * * * **
15148924 AACACGCAGAGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCGAGTTAGTGC
62 AACACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCTG-GTTAGCAC
* *
15148989 CCGCACGCCCGTTTCATGGGTTGGCTTAG
126 CCGCACGCTCGTTTCATGGGTTGACTTAG
* ** * * * * *
15149018 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTTGTG--GCAATGGGACCGA
1 GCATATGGAGTTCATTCCA-GTCTAAGATCGA-ACGGACCAAGGGTTGCGACGC-A--GGATCGA
* * * * * ** * *
15149081 CAGCACGCAAAGGGGGATTGGGCCGATCCTCGGCTTGCGCATTATGCCTC-TCCGATCGGTTCAA
61 CAACACGC-AGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCT-GGTT-AG
* * * *
15149145 CATCCGAACGCTCATTTCGTGGGTTGACTTAG
123 CACCCGCACGCTCGTTTCATGGGTTGACTTAG
*
15149177 GCATATGGAGTTCATTCTCAGTCTAAGATCGAACGGACCTAGGGTTGCGACGCAGGATCGACAAC
1 GCATATGGAGTTCATTC-CAGTCTAAGATCGAACGGACCAAGGGTTGCGACGCAGGATCGACAAC
* * * *
15149242 GCGCAGGGGGGACCGGGTCGGTCCTCGACTTGCGCATTCTGCCTCTTTGGCTGGTTGAGCACCCG
65 ACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCTGGTT-AGCACCCG
15149307 CACGCTCGTTTCATGGGTT-AGCTTAG
129 CACGCTCGTTTCATGGGTTGA-CTTAG
15149333 GCATATGGAGTTCATTCCA
1 GCATATGGAGTTCATTCCA
15149352 TATCTAAGCA
Statistics
Matches: 263, Mismatches: 57, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
155 4 0.02
156 83 0.32
157 20 0.08
158 64 0.24
159 88 0.33
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCGAACGGACCAAGGGTTGCGACGCAGGATCGACAACA
CGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCTGGTTAGCACCCGCA
CGCTCGTTTCATGGGTTGACTTAG
Found at i:15149490 original size:183 final size:182
Alignment explanation
Indices: 15149177--15149543 Score: 470
Period size: 183 Copynumber: 2.0 Consensus size: 182
15149167 GTTGACTTAG
* * *
15149177 GCATATGGAGTTCATTCTCAGTCTAAGATCGAACGGACCTAGGGTTGCGACGCAGGATCGACAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGTTGCGACGCAGGATCGACAAC
* * * * ** *
15149242 GCGCAGGGGGGACCGGGTCGGTCCTCGACTTGCGCATTCTGCCTCTTTGGCTGGTTGAGCACCCG
66 ACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCTGGCTGAGCACCCG
* * *
15149307 CACGCTCGTTTCATGGGTTAGCTTAGGCATATGGAGTTCATTCCATATCTAA
131 CACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATTCCATATCTAA
* * * **
15149359 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGCATTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGTTGCGAC-GCAGGATCGACA
* * *
15149424 GCACGCAGGGGGGATCGGG-CAGATCCCCG-CTTGCGCATTCTACCTCTCC-GATCGGCTGAGCA
64 ACACGCAGGGGGGACCGGGTC-GATCCCCGACTTGCGCATTCTACCTCTCCGGCT-GGCTGAGCA
* *
15149486 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAA
127 CCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATTCCATATCTAA
15149542 GC
1 GC
15149544 CCCAGCCGGA
Statistics
Matches: 158, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
182 30 0.19
183 96 0.61
184 32 0.20
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGTTGCGACGCAGGATCGACAAC
ACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCTGGCTGAGCACCCG
CACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATTCCATATCTAA
Found at i:15149674 original size:26 final size:26
Alignment explanation
Indices: 15149638--15149690 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15149628 GTTGGCTTAG
15149638 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
*
15149664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15149690 G
1 G
15149691 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15150373 original size:26 final size:26
Alignment explanation
Indices: 15150337--15150389 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15150327 GTTAAGTTAG
15150337 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15150363 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15150389 G
1 G
15150390 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15150717 original size:26 final size:26
Alignment explanation
Indices: 15150681--15150733 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15150671 GTTGGCTTAG
15150681 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
15150707 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15150733 G
1 G
15150734 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15151394 original size:26 final size:26
Alignment explanation
Indices: 15151358--15151410 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15151348 GTTAAGTTAG
15151358 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15151384 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15151410 G
1 G
15151411 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15151750 original size:26 final size:26
Alignment explanation
Indices: 15151701--15151753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15151691 GTTGGCTTAG
*
15151701 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
15151727 GCATACGGAGTTCATACCCA-GTCTAA
1 GCATACGGAGTTCAT-CCCATGTCTAA
15151753 G
1 G
15151754 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:15152412 original size:26 final size:26
Alignment explanation
Indices: 15152376--15152428 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15152366 GTTGACTTAG
15152376 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15152402 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15152428 G
1 G
15152429 ATTGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15152755 original size:26 final size:26
Alignment explanation
Indices: 15152719--15152771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15152709 GTTGGCTTAG
15152719 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
15152745 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15152771 G
1 G
15152772 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15153460 original size:26 final size:26
Alignment explanation
Indices: 15153430--15153482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15153420 GTTGACTTTG
15153430 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15153456 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15153482 G
1 G
15153483 ATCGCACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15154661 original size:25 final size:26
Alignment explanation
Indices: 15154614--15154665 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
15154604 GTTGACTTAG
15154614 GCATACGAAGTTCCTCCCTAGTCTAA
1 GCATACGAAGTTCCTCCCTAGTCTAA
*
15154640 GCATACG-AGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTC-CTCCCTAGTCTAA
15154665 G
1 G
15154666 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCCTCCCTAGTCTAA
Found at i:15155142 original size:159 final size:160
Alignment explanation
Indices: 15154777--15155145 Score: 415
Period size: 162 Copynumber: 2.3 Consensus size: 160
15154767 CCTACATGCC
* *
15154777 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGG
* * * *
15154842 TTGTGGCAGCGACATCGACAGCACGTAGAGGGTGATCGGACCGATCCCCGACTTGTTGCGCATTA
66 TTGTGGCAGCGACATCGACAACACGCAGAGGGGGATCGGACCGATCCCCGAC-T-TTACGCATTA
* * * *
15154907 TGCCTTTCCGGTCAGCTCAGCGCCCGCACACT
129 TGCATCTCCAGCCAGCTCAGCGCCCGCACACT
* * * ** *
15154939 CGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAG-ATCGGACCAGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAC-GTCTAAGCCCCAG-CCAGACCGAG
* * * * *
15155002 GGTTGTGGTAGC-AGGATCGACAACACGCAGAGGGGGATCGGGCCGGTGCCCGAC-TTACGCATT
64 GGTTGTGGCAGCGA-CATCGACAACACGCAGAGGGGGATCGGACCGATCCCCGACTTTACGCATT
* * * *
15155065 CTGCATCTCCAGCC-GATTCAGCGCCTGCACGCT
128 ATGCATCTCCAGCCAG-CTCAGCGCCCGCACACT
*
15155098 CGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAGC
15155146 ATACGGAGTT
Statistics
Matches: 172, Mismatches: 29, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
158 1 0.01
159 72 0.42
160 1 0.01
161 3 0.02
162 95 0.55
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAGCGACATCGACAACACGCAGAGGGGGATCGGACCGATCCCCGACTTTACGCATTATG
CATCTCCAGCCAGCTCAGCGCCCGCACACT
Found at i:15155148 original size:26 final size:26
Alignment explanation
Indices: 15155118--15155170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15155108 GTTGGCTTAG
*
15155118 GCATATGGAGTTCATTC-CACGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
15155144 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
15155170 G
1 G
15155171 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:15155984 original size:697 final size:698
Alignment explanation
Indices: 15154774--15156038 Score: 1609
Period size: 697 Copynumber: 1.8 Consensus size: 698
15154764 GCACCTACAT
* * *
15154774 GCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
1 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCGAACCGA
* * * *
15154839 GGGTTGTGGCAGCGACATCGACAGCACGTAGAGGGTGATCGGACCGATCCCCGACTTGTTGCGCA
66 GGGTTATGGCAGCGACATCAACAGCACGTAAAGGGGGATCGGACCGATCCCCGAC-T-TTGCGCA
* * * *
15154904 TTATGCCTTTCCGGTCAGCTCAGCGCCCGCACACTCGTTTCGTGGTTTGACTTAGGCATACGGAG
129 TTATGCCTCTCCGGTCAGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAG
** **
15154969 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAGGATCGACAACACGCAGAG
194 TTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTAAGGTAGCAGGATCGACAACACGCAGAG
* * * * **
15155034 GGGGATCGGGCCGGTGCCCGACTTACGCATTCTGCATCTCCAGCCGATTCAGCGCCTGCACGCTC
259 GGGGATCGGGCCGATCCCCGACTTACGCATTCT-CATCTCCAGCCGACTCAGCACCCACACGCTC
* *
15155099 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCTCA
323 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCTCA
* ** *
15155164 GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAAGACCAACAGCAGGATCGACAGCACACAG
388 GTCTAAGATCAGACCAGACCGAGGGTTGCAACACTAAGACCAACAGCAGGATCGACAGCACACAG
* *** * * * * * * *
15155229 GGGGGACTGGGCCGATCCCTAGCTTGCGCATTTTGCCTCTTCGGCCGGTTGGGCGCCCGCACGCT
453 GGCGGACCAAGCCGATCCCCAGCTTACGCATTCTCCCTCTTCGACCGGCTGAGCGCCCGCACGCT
* * * * * * *
15155294 CGTTTTATTGGTGGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCCCCAGCTGGACCGAGGG
518 CATTTCATGGGTGGACTGAGGCATACGGAGTTCATCCCTAGTCTAAGCCCCAGCTGGACCGAGGG
15155359 TTGTGGTAGCAGGACTGACAGCGGGATTGGTAGCACGCAGAGGAGGACCGAGCTGATCCCTGGCT
583 TTGTGGTAGCAGGACTGACAGCGGGATTGGTAGCACGCAGAGGAGGACCGAGCTGATCCCTGGCT
15155424 TGCGGATTATGCCTCTCTGATTGGCCTCTCTGGTCGGCTGAGCACCCGTAC
648 TGCGGATTATGCCTCTCTGATTGGCCTCTCTGGTCGGCTGAGCACCCGTAC
* *
15155475 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAG-CCCAGTCGAACTGA
1 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCGAACCGA
* ** *
15155539 GTGTTATGGCAGCGGGATCAACAGCAC-TCAAAGGGGGATCAGG-TCGATCCCC-AGC-TTGCGC
66 GGGTTATGGCAGCGACATCAACAGCACGT-AAAGGGGGATC-GGACCGATCCCCGA-CTTTGCGC
* * * * *
15155600 ATTATGCCTCTCTGG-CTGGCTCAATGCCCGGACACTTGTTTCATGGGTTGACTTAGGCATACGG
128 ATTATGCCTCTCCGGTC-AGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
* * * *
15155664 AGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTAAGGTAGCAGGATCGACAGCATGTAG
192 AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTAAGGTAGCAGGATCGACAACACGCAG
* * * * *
15155729 -GGGGGA-CTTGGCCGATCCCCGGCTTGCGCATTCT-ATCGCTCC-GACCGGCTGAGCACCCACA
257 AGGGGGATC-GGGCCGATCCCCGACTTACGCATTCTCAT--CTCCAG-CCGACTCAGCACCCACA
* * *
15155790 GGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAGAGTTCAT
318 CGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCATACAGAGTTCAT
* ** * * *
15155855 TC-CTAGTCTAAGATCAGACCAGACCGAGGGTTGCAACACTAGGACCAGTAGTAGGATTGGCAGC
383 TCTC-AGTCTAAGATCAGACCAGACCGAGGGTTGCAACACTAAGACCAACAGCAGGATCGACAGC
* *
15155919 ACGCAGGCGCGGACCAAGCCGATCCCCAGCTTACGCATTCTCCCTC-TCTGATCGGCTGAGCGCC
447 ACACAGG-GCGGACCAAGCCGATCCCCAGCTTACGCATTCTCCCTCTTC-GACCGGCTGAGCGCC
** *
15155983 CGCACTTTCATTTCATGGGTTGACTGAGGCATACGGAGTTCATCCCTAGTCTAAGC
510 CGCACGCTCATTTCATGGGTGGACTGAGGCATACGGAGTTCATCCCTAGTCTAAGC
15156039 ATACAGAGTT
Statistics
Matches: 474, Mismatches: 79, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
694 2 0.00
695 3 0.01
696 163 0.34
697 203 0.43
699 2 0.00
700 51 0.11
701 50 0.11
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (698 bp):
GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCGAACCGA
GGGTTATGGCAGCGACATCAACAGCACGTAAAGGGGGATCGGACCGATCCCCGACTTTGCGCATT
ATGCCTCTCCGGTCAGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTAAGGTAGCAGGATCGACAACACGCAGAGGG
GGATCGGGCCGATCCCCGACTTACGCATTCTCATCTCCAGCCGACTCAGCACCCACACGCTCGTT
TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCTCAGTC
TAAGATCAGACCAGACCGAGGGTTGCAACACTAAGACCAACAGCAGGATCGACAGCACACAGGGC
GGACCAAGCCGATCCCCAGCTTACGCATTCTCCCTCTTCGACCGGCTGAGCGCCCGCACGCTCAT
TTCATGGGTGGACTGAGGCATACGGAGTTCATCCCTAGTCTAAGCCCCAGCTGGACCGAGGGTTG
TGGTAGCAGGACTGACAGCGGGATTGGTAGCACGCAGAGGAGGACCGAGCTGATCCCTGGCTTGC
GGATTATGCCTCTCTGATTGGCCTCTCTGGTCGGCTGAGCACCCGTAC
Found at i:15156041 original size:26 final size:26
Alignment explanation
Indices: 15156011--15156063 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15156001 GTTGACTGAG
*
15156011 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15156037 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15156063 G
1 G
15156064 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15156496 original size:11 final size:11
Alignment explanation
Indices: 15156476--15156519 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
15156466 CCCGACGCAC
*
15156476 CATCGTCGGAG
1 CATCGCCGGAG
15156487 CATCGCCGGAG
1 CATCGCCGGAG
15156498 CATCGCCGGAG
1 CATCGCCGGAG
* *
15156509 TATCACCGGAG
1 CATCGCCGGAG
15156520 AGCCTAACCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.20, C:0.32, G:0.34, T:0.14
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:15157149 original size:26 final size:26
Alignment explanation
Indices: 15157099--15157151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15157089 GTTGCCTTAG
* *
15157099 GCATACGGATTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
15157125 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
15157151 G
1 G
15157152 ACCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:15157321 original size:26 final size:26
Alignment explanation
Indices: 15157285--15157335 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15157275 TGGCTTAGGT
15157285 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTACCA-GTCTAAGC
15157311 ATACGGAGTTCATTACCAGTCTAAG
1 ATACGGAGTTCATTACCAGTCTAAG
15157336 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTACCAGTCTAAGC
Found at i:15159640 original size:159 final size:158
Alignment explanation
Indices: 15159252--15159657 Score: 404
Period size: 159 Copynumber: 2.6 Consensus size: 158
15159242 TAATCATATA
* * * ** * *
15159252 GAGTTCATTCCCAGTCTAAGATTTG-ACCAGACCGAGGGTTGCGATAGTAGGATCGGTAGCACGC
1 GAGTTCATTCCCAGTCTAAGA-TCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGATAGCACGT
* * * *
15159316 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCAGTTTACCTGTCCGACCGGTTGAGCCCCCGCACA
65 AGGGGGGACCGGGTCGATCCCCGGCTTGCGCAGTTTACCTCTCCGACCGGCTCAGCCCCCGCACA
*
15159381 CCCGTTTCATGGGTTGGCTTAGGCATACG
130 CCCGTTTCATGGGTTGACTTAGGCATACG
** * ** * ** ** * *
15159410 GAGTTCATT-CCATGTCTAAGCCCCAGTCGGATTGAGGGTTATGGCAGCGGGACCGACAGCACGT
1 GAGTTCATTCCCA-GTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGATAGCACGT
* * * * ** ** *
15159474 AGAGGGGGATCGGGTCGATCCCTGGCTTGCGCA-TTATGCCTCTTCGGTCGGCTCAGTGCCTGCA
65 AG-GGGGGACCGGGTCGATCCCCGGCTTGCGCAGTT-TACCTCTCCGACCGGCTCAGCCCCCGCA
* * *
15159538 CGCTCGTTTCATGGTTTGACTTAGGCATACG
128 CACCCGTTTCATGGGTTGACTTAGGCATACG
*
15159569 GAGTTCAATTCCCAATCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGATAGCACGT
1 GAGTTC-ATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGATAGCACGT
*
15159634 AGGGGGGACCGGGTTGATCCCCGG
65 AGGGGGGACCGGGTCGATCCCCGG
15159658 TTTATGCATT
Statistics
Matches: 190, Mismatches: 52, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
157 3 0.02
158 44 0.23
159 97 0.51
160 43 0.23
161 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGTAGGATCGATAGCACGTA
GGGGGGACCGGGTCGATCCCCGGCTTGCGCAGTTTACCTCTCCGACCGGCTCAGCCCCCGCACAC
CCGTTTCATGGGTTGACTTAGGCATACG
Found at i:15159977 original size:26 final size:26
Alignment explanation
Indices: 15159930--15159981 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15159920 TTGACTTAGA
*
15159930 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCACAGTCTAAG
* * *
15159956 CATACGGAGTTCATTCATAGTCTAAG
1 CATACGAAGTTCATCCACAGTCTAAG
15159982 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCACAGTCTAAG
Found at i:15160422 original size:159 final size:159
Alignment explanation
Indices: 15160082--15160431 Score: 371
Period size: 159 Copynumber: 2.2 Consensus size: 159
15160072 CCAACTGAGT
* * * *
15160082 GCCCGCACGCCCATTTCGTGGGTTGGCATAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAAC
1 GCCCGCACGCCCGTTTCGTGGGTTTGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAAC
* * * * * *
15160147 CAGACCAAGGGTTATGGCAGTAGGACCGGCAGCACACAGAAGGCAATCGGGCCGATCCCTAGCTA
66 CAGACCAAGGGTTATGGCAGCAGGACCGACAGCACACAGAAGGCAACCGGGCCAATCCCCAACTA
* *
15160212 GAGCATTATGCCTTTCCAGCTGGCTGAGC
131 GAGCATTATGCCTTTCCAGCCGGCTCAGC
* * * **
15160241 GCCCGTACGCCCGTTCCGTGGGTTTGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGT
1 GCCCGCACGCCCGTTTCGTGGGTTTGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAAC
* * * * ** * ** * *
15160306 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCTAATCCCCAACTT
66 CAGACCAAGGGTTATGGCAGCAGGACCGACAGCACACAGAAGGCAACCGGGCCAATCCCCAACTA
* * *
15160371 GCA-CATTATGCCTTTTCGGCCGGTTCAGC
131 G-AGCATTATGCCTTTCCAGCCGGCTCAGC
* *
15160400 GCCCGCACGCTCGTTTCATGGG-TTGACTTAGG
1 GCCCGCACGCCCGTTTCGTGGGTTTG-CTTAGG
15160432 TGTACAAAGT
Statistics
Matches: 154, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
158 3 0.02
159 150 0.97
160 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (159 bp):
GCCCGCACGCCCGTTTCGTGGGTTTGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAAC
CAGACCAAGGGTTATGGCAGCAGGACCGACAGCACACAGAAGGCAACCGGGCCAATCCCCAACTA
GAGCATTATGCCTTTCCAGCCGGCTCAGC
Found at i:15160728 original size:13 final size:13
Alignment explanation
Indices: 15160710--15160735 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15160700 CACATTATGG
15160710 CTCTCCGGTCGGC
1 CTCTCCGGTCGGC
15160723 CTCTCCGGTCGGC
1 CTCTCCGGTCGGC
15160736 TGAGCACCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23
Consensus pattern (13 bp):
CTCTCCGGTCGGC
Found at i:15160809 original size:26 final size:26
Alignment explanation
Indices: 15160773--15160824 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15160763 TTGACTTACA
*
15160773 CATACGGAGTTCCTCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
15160799 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
15160825 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:15161322 original size:26 final size:26
Alignment explanation
Indices: 15161273--15161325 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15161263 GTTGGCTTAG
*
15161273 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTACATGTCTAA
*
15161299 GCATATGGAGTTCATTAACA-GTCTAA
1 GCATACGGAGTTCATT-ACATGTCTAA
15161325 G
1 G
15161326 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACATGTCTAA
Found at i:15162636 original size:158 final size:157
Alignment explanation
Indices: 15162153--15162637 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 157
15162143 CTAAGTATAT
* * * * *
15162153 GGAGTTTATTCCTTGTCTAAGATCAGACCGGATTGAGGGTTGTGACAGCAGGATCGATAGCACAC
1 GGAGTTCATTCCATGCCTAAGATCAGACCGGACTGA-GGTTGTGACAGCAGGATCGACAGCACAC
* * * *
15162218 AGGGGGGACC-GAGCCTATCCTCGGCTTACGCATTCTACCTCTCCGGTCGGTTGAACGACCGCAC
65 AGGGGGGACCAG-GCCAATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGTTGAGCGCCCGCAC
* * ** *
15162282 GCACATTTCATTTGTTGGCTTAGGCATAG
129 GCTCGTTTCATGGGTTGGCTTAGGCATAC
* ** * * *
15162311 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAAGGTTGTGACAGCGGGACCGACAGCACA
1 GGAGTTCATTCCATGCCTAAG-ATCAGACCGGACTG-AGGTTGTGACAGCAGGATCGACAGCACA
* * ** * * * ** * * *
15162375 AAGAGGGGGACAAGGCTGATCCCCGGCTTACGCATTATGA-CTCTTCTTCCGGCTCAGCGCCCAC
64 CAG-GGGGGACCAGGCCAATCCTCGGCTTACGCATTCT-ACCTCTCCGGCCGGTTGAGCGCCCGC
* * * *
15162439 ACGCTTGCTTCATGGCTTGACTTAGGCATAC
127 ACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
15162470 GGAGTTCATTCCCA-GCCTAAGATCAGACCGGACTGAGGTTTGTGACAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGCCTAAGATCAGACCGGACTGAGG-TTGTGACAGCAGGATCGACAGCACA
* * * * *
15162534 CAGGGGGGACCAGGCCAATCCTCGGCTTGCGCATTCTTCCTCTCCGGCCGGTTGAGTGCCCGTAT
64 CAGGGGGGACCAGGCCAATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGTTGAGCGCCCGCAC
* *
15162599 GCTCGTTTCGTGGGTTGGCTTAGGCATAT
129 GCTCGTTTCATGGGTTGGCTTAGGCATAC
*
15162628 AGAGTTCATT
1 GGAGTTCATT
15162638 TCACGTCTAA
Statistics
Matches: 254, Mismatches: 64, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
158 134 0.53
159 115 0.45
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GGAGTTCATTCCATGCCTAAGATCAGACCGGACTGAGGTTGTGACAGCAGGATCGACAGCACACA
GGGGGGACCAGGCCAATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGTTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:15163379 original size:26 final size:25
Alignment explanation
Indices: 15163343--15163394 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15163333 GTTGACTTAG
15163343 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCA-TCTAA
* *
15163369 GCATATGGAGTTCATTCCCATCTAA
1 GCATACGGAGTTCATCCCCATCTAA
15163394 G
1 G
15163395 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCATCTAA
Found at i:15163645 original size:26 final size:26
Alignment explanation
Indices: 15163615--15163667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15163605 GTTGACTTAG
* *
15163615 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15163641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15163667 G
1 G
15163668 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15164190 original size:26 final size:26
Alignment explanation
Indices: 15164154--15164206 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15164144 GTTGGCTTAG
*
15164154 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15164180 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15164206 G
1 G
15164207 ATCAATCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15164736 original size:26 final size:26
Alignment explanation
Indices: 15164706--15164758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15164696 GTTGACTTAG
*
15164706 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15164732 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15164758 G
1 G
15164759 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15164997 original size:356 final size:356
Alignment explanation
Indices: 15164327--15165003 Score: 887
Period size: 356 Copynumber: 1.9 Consensus size: 356
15164317 GTGCTCGCAC
* * *
15164327 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATT
1 GCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * * *
15164392 CCCAATCTATGATCGGAATGGACTGAGGGTTGCGATAGCAGGATTGGCAGCACGCAGGGGAGACC
66 CCCAATCTAAGATCGAAATGGACTCAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGAGACC
* *
15164457 GACCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCCCGTTTCAT
131 GACCCGATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCAGAGCACCCACACGCCCGTTTCAT
** * *
15164522 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGGGGGTTGTGGCA
196 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTAGTGGCA
** *** * * *
15164587 GCGGGACCGACAGAACACAAAAGGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTTCGG
261 GCCAGACCGACAGAACACAAAAGGGGACCGGGCCAATCCCAGACTTGCGCATTCTACCTCTTCGG
15164652 TTGACCTCTTCGACTGACTGAGCGCCTACAT
326 TTGACCTCTTCGACTGACTGAGCGCCTACAT
* *
15164683 GCTCGTTTCATAGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGTGTTCATT
1 GCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * *
15164748 CCCAGTCTAAGATC-AAATTGGAC-CACGGGTTACGATAGCAGGATCGACAGCACGTAGGGGGGA
66 CCCAATCTAAGATCGAAA-TGGACTCA-GGGTTACGATAGCAGGATCGACAGCACGCAGGGGAGA
* * * * *
15164811 CCGGGCCTG-TCCCCGGTTTACGCATTCTGCCTCTCCGACCGGCAGAGCACCCGA-ACGCCCGTT
129 CC-GACCCGATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCAGAGCACCC-ACACGCCCGTT
* * *
15164874 TTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGTGTAGT
192 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTAGT
** * ** * *
15164939 GGCAGCCAGACCGGTAGCACGTAGAGGGGGACCGGGCCAATCCTCAG-CTTGCGCATTCTACCTC
257 GGCAGCCAGACCGACAGAACACAAAAGGGGACCGGGCCAATCC-CAGACTTGCGCATTCTACCTC
15165003 T
321 T
15165004 CCGGCAAGCT
Statistics
Matches: 273, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
355 3 0.01
356 263 0.96
357 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (356 bp):
GCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAATCTAAGATCGAAATGGACTCAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGAGACC
GACCCGATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCAGAGCACCCACACGCCCGTTTCAT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTAGTGGCA
GCCAGACCGACAGAACACAAAAGGGGACCGGGCCAATCCCAGACTTGCGCATTCTACCTCTTCGG
TTGACCTCTTCGACTGACTGAGCGCCTACAT
Found at i:15165085 original size:26 final size:26
Alignment explanation
Indices: 15165049--15165100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15165039 GTTGACTTAG
15165049 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
15165075 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
15165101 AAGATTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:15165773 original size:26 final size:26
Alignment explanation
Indices: 15165742--15165794 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15165732 GTTGACTTAG
15165742 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15165768 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15165794 G
1 G
15165795 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15166086 original size:159 final size:159
Alignment explanation
Indices: 15165768--15166271 Score: 495
Period size: 159 Copynumber: 3.2 Consensus size: 159
15165758 CCCAGTCTAA
* * * *
15165768 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * * *
15165832 AACAGGCAG-GAGGGATCAGG-CTAGTCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTAAGC
65 AGCACGCAGAGGGGGATCGGGCCGA-TCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTAAGC
* * * *
15165895 GCCCGCACGCCCGTTTCGTGGGTTGGCATAG
129 ACCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * *
15165926 GCATAGGGAGTTCATTTCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGTAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * *
15165990 AGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTTCGCATTATGCCTCTTCGATCGGGTCAGCA
65 AGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTAAGCA
* * *
15166055 CCCGCACACTCATTTCGTGTGTTGACTTAG
130 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * ** *
15166085 GCATACGGAGTTCGTTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTAAGGTAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * *
15166149 ATG-ACGC--AGGGGGATCGAGCCGATACTC-AGCTTGCGCATTTTGCCTCTTCGATCGACTGAG
65 A-GCACGCAGAGGGGGATCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTTCGATCGGCT-A-
* *
15166210 CGCCCGCACGCACACTCGTTTCGTGGGTTGGCTTAG
126 AGCAC-C-CGCACACTCGTTTCGTGGGTTGGCTTAG
*
15166246 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15166272 CCATACGGAG
Statistics
Matches: 282, Mismatches: 51, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 44 0.16
158 59 0.21
159 124 0.44
160 9 0.03
161 45 0.16
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTAAGCAC
CCGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:15166283 original size:26 final size:26
Alignment explanation
Indices: 15166247--15166297 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15166237 TTGGCTTAGG
15166247 CATACAGAGTTCA-TTCCATGTCTAAC
1 CATACAGAGTTCATTTCCA-GTCTAAC
*
15166273 CATACGGAGTTCATTTCCAGTCTAA
1 CATACAGAGTTCATTTCCAGTCTAA
15166298 GATCGGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTTCCAGTCTAAC
Found at i:15167264 original size:11 final size:11
Alignment explanation
Indices: 15167244--15167274 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
15167234 CTCGGGGCAC
15167244 CATCGCCGGAG
1 CATCGCCGGAG
*
15167255 CATCGTCGGAG
1 CATCGCCGGAG
15167266 CATCGCCGG
1 CATCGCCGG
15167275 GAGCCTAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.16, C:0.35, G:0.35, T:0.13
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:15168354 original size:159 final size:157
Alignment explanation
Indices: 15167852--15168354 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 157
15167842 CCCAGTCTAA
* ** * *
15167852 GCATATGGAGTTCATTCC-TAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGTAGGATCGAT
* * * * * *
15167916 AACACGTAGGGGGGACCGGCCCGATCCCCGACTTGCGCATTTTGCCTGTCCAGTTGCCTGAGCGC
65 AGCACGTAGGGGGGACCGG-CCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGACTGAGCGC
* * *
15167981 CCGCACGCCTGTTTCCTGGGTTAGCTTAG
129 CCGCACGCTTGTTTCATGGGTTGGCTTAG
* * * *** * * *
15168010 GGATAGGGAGTTTATTCCATGTCTAACCCCCAG-CTGGATCGAGGGTTGTGGTAGTGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAA-GATCAGACCGGATCGAGGGTTGTGGTAGTAGGATCGAT
* * * * * * *
15168074 AGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGTGAATTATGCCTCTTCGGCTGACTCAGCG
65 AGCACGTAG-GGGGGACC-GGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGACTGAGCG
* * * * * *
15168139 CCTGTATGCTCGTTTCATGGGTTGACTTAT
128 CCCGCACGCTTGTTTCATGGGTTGGCTTAG
* * * * * * *
15168169 GCATACGGAGTTAATTCCCA-GCCTAAGATCAGACCGGACCGAGGGTTGTAGTAGCAAGATCAAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGTAGGATCGAT
* * * *
15168233 AGTA-GATAGGGGGGAACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGC
65 AGCACG-TAGGGGGG-ACCG-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGACTGAGC
15168297 GCCCGCACGCTTGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTTGTTTCATGGGTTGGCTTAG
15168328 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15168355 CATACGAAGT
Statistics
Matches: 266, Mismatches: 69, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
158 67 0.25
159 194 0.73
160 5 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGTAGGATCGATA
GCACGTAGGGGGGACCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGACTGAGCGCCC
GCACGCTTGTTTCATGGGTTGGCTTAG
Found at i:15168358 original size:26 final size:26
Alignment explanation
Indices: 15168328--15168380 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15168318 GTTGGCTTAG
*
15168328 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15168354 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15168380 G
1 G
15168381 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15169432 original size:26 final size:26
Alignment explanation
Indices: 15169403--15169455 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15169393 GTTGGCTTAG
15169403 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15169429 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15169455 G
1 G
15169456 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15169541 original size:11 final size:11
Alignment explanation
Indices: 15169525--15169557 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
15169515 CTCGGGGCAC
15169525 CATCGTCGGAG
1 CATCGTCGGAG
15169536 CATCGTCGGAG
1 CATCGTCGGAG
15169547 CATCGTCGGAG
1 CATCGTCGGAG
15169558 AGCCTAACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15170166 original size:26 final size:26
Alignment explanation
Indices: 15170137--15170189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15170127 GTTGACTTAG
*
15170137 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15170163 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15170189 G
1 G
15170190 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15172213 original size:158 final size:157
Alignment explanation
Indices: 15171755--15172249 Score: 514
Period size: 159 Copynumber: 3.1 Consensus size: 157
15171745 CTAAGCAAAT
* ** * *
15171755 GGAGTTCATTCCCA-GTCTAAGATCAGATCAGACCGAATGTTGCAATAGCAGGATCGGCAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCCGATCAGACCGAGGGTTGTAGTAGCAGGATC-GCAGCACG
* * * * * * * *
15171819 AA-GGGGGACCGGGCCGATCCTCGGCTTACGCATTCTACCTTTTCGATCGACTTAGCGCCCGCAC
64 AAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGACTCAGTGCCCGCAC
* * *
15171883 GCCCA-TTTCGTGGGTTGGCTTAGGCATAG
129 G-CTAGTTTCATGGGTTGGCTTAGGCATAC
* * * * * ** * *
15171912 GGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACTGAGGGTTGTGGTAGTGGGACCCGCAGCATG
1 GGAGTTCATTCCATGTCTAAGATCCGA-TCAGACCGAGGGTTGTAGTAGCAGGA-TCGCAGCACG
* * * * ** *
15171976 CAGAGGGGAATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCA
64 AAG-GGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGACTCAGTGCCCGCA
* * *
15172041 CGCTCGTTTCATGGGTTGACTTATGCATAC
128 CGCTAGTTTCATGGGTTGGCTTAGGCATAC
*
15172071 GGAGTTCATTCCCA-GTCTAAGATCCGATCAGACCGAGGGTTATAGTAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCCGATCAGACCGAGGGTTGTAGTAGCAGGATCG-CAGCACG
* * * *
15172135 AAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTTTGCCTCTCCGATCGACTGAGTGCCCGCAC
64 AAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGACTCAGTGCCCGCAC
15172200 GCTAGTTTCATGGGTTGGCTTAGGCATAC
129 GCTAGTTTCATGGGTTGGCTTAGGCATAC
*
15172229 GGAGTTAATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
15172250 CATACAGAGT
Statistics
Matches: 268, Mismatches: 60, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
156 5 0.02
157 45 0.17
158 98 0.37
159 114 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCCGATCAGACCGAGGGTTGTAGTAGCAGGATCGCAGCACGAA
GGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGACTCAGTGCCCGCACGC
TAGTTTCATGGGTTGGCTTAGGCATAC
Found at i:15172252 original size:26 final size:26
Alignment explanation
Indices: 15172223--15172275 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15172213 GTTGGCTTAG
*
15172223 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
15172249 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
15172275 G
1 G
15172276 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:15172998 original size:26 final size:26
Alignment explanation
Indices: 15172956--15173006 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15172946 GTTGACTTAG
*
15172956 GCATATGGAATTAATTCCCAGTCTAA
1 GCATATGGAATTAATTCCCAATCTAA
* *
15172982 GCATATGGAGTTCATTCCCAATCTA
1 GCATATGGAATTAATTCCCAATCTA
15173007 CGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATATGGAATTAATTCCCAATCTAA
Found at i:15173278 original size:159 final size:156
Alignment explanation
Indices: 15173023--15173486 Score: 470
Period size: 159 Copynumber: 2.9 Consensus size: 156
15173013 GACCGGACTA
* * * * *
15173023 AGGGTTGTGGTAGCAGGATCGGCAACACGCAGGGGGGACCAGGCCGATCCCTGA-TTTACGCATT
1 AGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGGGACC-GGTCGATCCCCGACTTT-CGCATT
* * * *
15173087 CTGCCACTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTAGATTAGGCATACGGAGTT
64 CTGCCTCTCCGACCGGCTGAG-CCCCGCACGCTCATTTCATGGGTTAGATTAGGCATACGGAGTT
*
15173152 CATTCCTTGTCTAAGCCCCAG-TCAGACCG
128 CATTCCTTGTCTAAGCACCAGAT-AGACCG
* * *
15173181 AGGGTTGTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGTCTGATCCCCAACTTTCGCATT
1 AGGGTTGTGGTAGTAGGATCGACAGCACGCAG-GGGGGACCGGTC-GATCCCCGACTTTCGCATT
* * *
15173246 ATGCCTCTCCGACCGGCTCAGCATCCGCACGCTCATTTCATGGGTTA-ACTTAGGCATACGGAGT
64 CTGCCTCTCCGACCGGCTGAGC-CCCGCACGCTCATTTCATGGGTTAGA-TTAGGCATACGGAGT
* * *
15173310 TCATT-CTCAGTCTAAG-ATCAGAATGGACCG
127 TCATTCCT-TGTCTAAGCACCAG-ATAGACCG
* * * * ** *
15173340 AGGGTTGCGGTAGTAGGATCAACAGCACGTAGGGGAGATTGAGTCGATCCCCCGACTTGCGCATT
1 AGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGGGACCG-GTCGAT-CCCCGACTTTCGCATT
* * * * * *
15173405 CTGCCTCTCCGACCGGTTGAGCGCTCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTT
64 CTGCCTCTCCGACCGGCTGAGC-CCCGCACGCTCATTTCATGGGTTAGATTAGGCATACGGAGTT
* *
15173470 CAATCCATGTCTAAGCA
128 CATTCCTTGTCTAAGCA
15173487 TGCAGAGTTC
Statistics
Matches: 251, Mismatches: 42, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
158 45 0.18
159 200 0.80
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
AGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGGGGACCGGTCGATCCCCGACTTTCGCATTCT
GCCTCTCCGACCGGCTGAGCCCCGCACGCTCATTTCATGGGTTAGATTAGGCATACGGAGTTCAT
TCCTTGTCTAAGCACCAGATAGACCG
Found at i:15173855 original size:26 final size:26
Alignment explanation
Indices: 15173825--15173877 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15173815 GTTGACTTAG
* *
15173825 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAATCTAA
*
15173851 GCATACCGAGTTCATTCCCAATCTAA
1 GCATACCGAGTTCATCCCCAATCTAA
15173877 G
1 G
15173878 TCAGACTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAATCTAA
Found at i:15174149 original size:159 final size:160
Alignment explanation
Indices: 15173918--15174668 Score: 605
Period size: 159 Copynumber: 4.8 Consensus size: 160
15173908 ATCGATAGCG
* * * * ** * * * * *
15173918 CGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCACATTCTTTCTCTTCGACCGACTGAGTGCCTG
1 CGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
* * *
15173982 CAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA
66 CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGA
*
15174046 CTGAGGGTTGTGGCAGCGAGATCGGCAGCA
131 CTGAGGGTTGCGGCAGCGAGATCGGCAGCA
** * * * * *
15174076 CGCAGAGGGGGACCTAGTCGATCCCCAGCTTGCGCATTATGCCTCTCCAATCGGCTCAGGGCCCG
1 CGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
* * * * * ***
15174141 AACCCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCA-GTCTATG-ATTGGATCGG
66 CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCACCAGATCGG
* *
15174204 A-TCGAGGGTTGCGGTAGC-AGGATCGACAGCA
130 ACT-GAGGGTTGCGGCAGCGA-GATCGGCAGCA
* * * * * * * * * * * *
15174235 CACCGGGGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCAGCTGAGTGCCCG
1 CGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
* * * * * *
15174300 CACGCTCATTTCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAA
66 CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGA
* * * * *
15174364 CCGAGGGTTGTGGCAGCGGGACCAGCAGCA
131 CTGAGGGTTGCGGCAGCGAGATCGGCAGCA
* * * * * ** * *
15174394 CGTAGA--GGGACAGGGCCAATCCCCGGCCTGCGTATTATGCCTCTTTGGCCGGTTCAGCGCCCG
1 CGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
* * * * *
15174457 CACGCCCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCA-GTC--A-CAATCAGACCG
66 CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC-ACCAGATCG
* *
15174518 GACTGAGGGTTGCGGCAGCAAGATTGAG-AGCA
129 GACTGAGGGTTGCGGCAGCGAGATCG-GCAGCA
* * * ** * * *
15174550 TGCAG-GAGGGACCGGGCCGATCCTCGGCTTGTACATTCTGCCTCTCCGATCGGCTGAGCGCCCG
1 CGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
* * *
15174614 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
66 CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15174669 TAGGAGTTCA
Statistics
Matches: 451, Mismatches: 123, Indels: 37
0.74 0.20 0.06
Matches are distributed among these distances:
154 1 0.00
155 4 0.01
156 30 0.07
157 167 0.37
158 15 0.03
159 228 0.51
160 6 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (160 bp):
CGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGA
CTGAGGGTTGCGGCAGCGAGATCGGCAGCA
Found at i:15175396 original size:26 final size:26
Alignment explanation
Indices: 15175360--15175412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15175350 GTTGACTTAG
*
15175360 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15175386 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15175412 G
1 G
15175413 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15176108 original size:26 final size:26
Alignment explanation
Indices: 15176071--15176149 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15176061 GTTGACTTAG
* *
15176071 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15176097 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15176123 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
15176149 G
1 G
15176150 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 49 0.98
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15176626 original size:26 final size:26
Alignment explanation
Indices: 15176597--15176649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15176587 GTTAGCTTAG
*
15176597 GCATACGGAGTTC-TTTCCACGTCTAA
1 GCATACGGAGTTCATTACCA-GTCTAA
15176623 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
15176649 G
1 G
15176650 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:15177342 original size:25 final size:27
Alignment explanation
Indices: 15177307--15177358 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
15177297 CGTGGGTTGA
15177307 CTTAGGCATACGGAGTTCA-TCCCAGT
1 CTTAGGCATACGGAGTTCATTCCCAGT
*
15177333 CTTA-GCATACGGGGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATTCCCAGT
15177359 GTAAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATTCCCAGT
Found at i:15177847 original size:26 final size:26
Alignment explanation
Indices: 15177811--15177863 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15177801 GTTGGCTTAG
15177811 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
15177837 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
15177863 G
1 G
15177864 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:15178042 original size:26 final size:26
Alignment explanation
Indices: 15178006--15178058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15177996 GTTGACTTAG
15178006 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15178032 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15178058 G
1 G
15178059 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15178511 original size:157 final size:157
Alignment explanation
Indices: 15178068--15178523 Score: 434
Period size: 159 Copynumber: 2.9 Consensus size: 157
15178058 GATCAGATTG
* * * *
15178068 GACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGCG
1 GACCAAGGGTTGCGGCAG-AGGATCGACAGCACGCAGGGGGGATCA-GCCGATCCCTGGCTTGCG
* * * *
15178133 GATTCTGCCTCTCCGATCGACTGAGTTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGG
64 CATTCTGCCTCTCCGATCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
15178198 AGTTCATT-CCATGTCTAAGCCCCTACCA
129 AGTTCATTCCCATATCCAAGACCCGACCA
* * * * * * ** *
15178226 GACCAAGGGTTGTGGCAGCGAGAGCGACAGCACACAGGAGGGGACCGGGCTAATCCCTGGCTTAC
1 GACCAAGGGTTGCGGCAGAG-GATCGACAGCACGCAGG-GGGGATC-AGCCGATCCCTGGCTTGC
* * * * * * * * *
15178291 GCATTATGCCTCTTCGGTCAGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTT-GTACATAC
63 GCATTCTGCCTCTCCGATCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAG-GCATAC
* *** *
15178355 GAAGTTCATTCCCA-ATCCAAGATTGGACCG
127 GGAGTTCATTCCCATATCCAAGACCCGACCA
*** *
15178385 GACTGTGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGGATCAGCCGATCCCTGGCTTGCGC
1 GACCAAGGGTTGCGGCAG-AGGATCGACAGCACGCAGGGGGGATCAGCCGATCCCTGGCTTGCGC
* * *
15178450 ATTCTGCCTCTCC-AGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
65 ATTCTGCCTCTCCGATC-GGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
15178514 AGTTCATTCC
129 AGTTCATTCC
15178524 ATGTCTAAGC
Statistics
Matches: 230, Mismatches: 60, Indels: 17
0.75 0.20 0.06
Matches are distributed among these distances:
156 1 0.00
157 73 0.32
158 39 0.17
159 113 0.49
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GACCAAGGGTTGCGGCAGAGGATCGACAGCACGCAGGGGGGATCAGCCGATCCCTGGCTTGCGCA
TTCTGCCTCTCCGATCGGCTGAGTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCCATATCCAAGACCCGACCA
Found at i:15178536 original size:26 final size:26
Alignment explanation
Indices: 15178506--15178558 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15178496 GTTGGCTTAG
*
15178506 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTGCATTCCCA-GTCTAA
*
15178532 GCATATGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
15178558 G
1 G
15178559 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:15179401 original size:26 final size:26
Alignment explanation
Indices: 15179371--15179423 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15179361 GTTGACTTAG
*
15179371 GCATATGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
15179397 GCATACGAAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15179423 G
1 G
15179424 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15180634 original size:26 final size:26
Alignment explanation
Indices: 15180595--15180647 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15180585 GTTGACTTAG
* *
15180595 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
* *
15180621 GCATACGAATTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
15180647 G
1 G
15180648 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:15181947 original size:158 final size:158
Alignment explanation
Indices: 15181491--15181993 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 158
15181481 CCAGTTTAAC
* * * *
15181491 CATACAGAGTTCATTCCCCGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATTGGTAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
* * ** * * * **
15181556 CACGTAGGGGGGACCGGGCCGATCCTCAACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCATCC
66 CATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCC
**
15181621 GCATGCTCGTTTCGTGCATTGGCTTAGG
131 GCATGCTCGTTTCGTGGGTTGGCTTAGG
** ** * * ** * * * *
15181649 CATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCAAGGGTTGTGGTAACAAGACCGAG
1 CATACAGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGACAGCAGGATCGAT
* * * * * * *
15181712 AGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTC-AGTCGGCTCAGG
64 AGCATGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGC
* * *
15181776 GCCCGCATGCTCGTTTCATGGGTTGACTTATG
127 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
15181808 CGTACAAAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCGATAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
* *
15181873 CTTGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCC
66 CATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCC
* *
15181938 GTACGCTCGTTTCGTGGGTTGGCTTAGG
131 GCATGCTCGTTTCGTGGGTTGGCTTAGG
* * *
15181966 CATACGGAGTTCTTTCCTAGTCTAAGAT
1 CATACAGAGTTCATTCCCAGTCTAAGAT
15181994 TTTGAGCCAC
Statistics
Matches: 263, Mismatches: 75, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 141 0.54
159 117 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
CATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCCC
GCATGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:15182982 original size:159 final size:157
Alignment explanation
Indices: 15182688--15183815 Score: 890
Period size: 159 Copynumber: 7.1 Consensus size: 157
15182678 CCCAGTCTAA
* * * * * * * *
15182688 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCGGCAGCTGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCA-ACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * * * *
15182753 GCACG--TAGGGGGATCGAGCC-AGTCCCCGGCTTACACATTCTGCCTCTCC-GACTGACTGAGT
64 GCACGCAGAGGGGGACCGGGCCGA-TCCCCGGCTTGCACATTATGCCTCTCCGGTC-GGCTCAGC
* * *
15182814 GCCCGCACGCCCGTTCCGTGGGTTGGCTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
15182845 GCATAGGGAGTTCATTCCATGTCTAAGCACCAACCAGACCAAGGGTTGTGGCAGTGGGACCGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * *
15182910 GCATGTAGAAGGGGACCGGGCTGATCCCCGACTTGCACATTATGCCTCTCCGGTCGGCTCAACAC
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCAC
* *
15182975 CCGCACGCTCATTTCGTGGGTTGACTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * ** *
15183004 GCATACGAAATTCATTCCCAGTCTAAGATCGGATCGGGTCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGA-CCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * * * *
15183069 GCACGCA-AGCGGGGACCGGG-TGGTCCTCGGCTTGCTCATTCTACCTCTCTGGTCGACTGAGCA
64 GCACGCAGAG-GGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCA
* * *
15183132 CCCGCACGCCCGTTTCATGGGTTGGTTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
15183162 GCATATGGAGTTCATTCCATGTCTAAGCCCCAGTC-GAACCAAGGGTTGTGGCAACGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAACCAG-ACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * *
15183226 AGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTTCACATTATGCCTCTCCGATCGGCTCAGCA
63 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCA
* * *
15183291 CCCGCACGCTCATTTTGTGGGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * ** * * ** *
15183321 GCATAAAGAGTTCATTCCCAATCTAAGATCAGATTAGATCGAGGGTTGTGACAGCAGGATTGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCA-ACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * **
15183386 GCAGGCA-AGGTGGACCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTTCGGTTGGC-CGAGTG
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTC-AGCA
* *
15183449 CCCGCACGCCCGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
15183479 ACGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGATTGTGGCAGC-GAGACCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCAACCAGACCGAGGGTTGTGGCAGCAG-GACCGAC
* * * * ***
15183543 AGCATGCAGAGGGGGACCGGGCCGACCCCCGGCTTGCAAATTATGCCTCTCCGATCGGCTCAATG
63 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCA
* *
15183608 CCCGAACGCTCGTTTCGTGGGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
15183638 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGACGGTTGCGGCCGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCA-ACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * **
15183703 GCACACAGGGGGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGGTTGGCTGAGTGC
64 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCAC
* * *
15183768 CCACACGCTCATTTCGTAGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
15183797 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
15183816 AATCAAAGCT
Statistics
Matches: 761, Mismatches: 184, Indels: 51
0.76 0.18 0.05
Matches are distributed among these distances:
156 3 0.00
157 58 0.08
158 247 0.32
159 438 0.58
160 15 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGC
ACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15183268 original size:317 final size:317
Alignment explanation
Indices: 15182688--15183815 Score: 1372
Period size: 317 Copynumber: 3.6 Consensus size: 317
15182678 CCCAGTCTAA
* * * * *
15182688 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CAGAGGGTTGCGGCAGCTGGATCGAT
1 GCATACGAAATTCATTCCCAATCTAAGATCAGATCGGATC-GAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
15182752 AGCACG-TAGGGGGATCGAGCCAGTCCCCGGCTTACACATTCTGCCTCTC-CGACTGACTGAGTG
65 AGCACGCAAGGGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCTGGTC-GACTGAGTG
* * *
15182815 CCCGCACGCCCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAACC
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
15182880 AGACCAAGGGTTGTGGCAGTGGGACCGGCAGCATGTAGAAGGGGACCGGGCTGATCCCCGACTTG
194 AGACCAAGGGTTGTGGCAGCGGGACCGACAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTG
*
15182945 CACATTATGCCTCTCCGGTCGGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
259 CACATTATGCCTCTCCGATCGGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
15183004 GCATACGAAATTCATTCCCAGTCTAAGATCGGATCGGGTCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGAAATTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * **
15183069 GCACGCAAGCGGGGACCGGG-TGGTCCTCGGCTTGCTCATTCTACCTCTCTGGTCGACTGAGCAC
66 GCACGCAAG-GGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCTGGTCGACTGAGTGC
* * * *
15183133 CCGCACGCCCGTTTCATGGGTTGGTTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTC-
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
15183197 GAACCAAGGGTTGTGGCAACGGGACCGACAGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTT
195 G-ACCAAGGGTTGTGGCAGCGGGACCGACAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTG
* *
15183262 CACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAG
259 CACATTATGCCTCTCCGATCGGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
** * * *
15183321 GCATA--AAGAGTTCATTCCCAATCTAAGATCAGATTAGATCGAGGGTTGTGACAGCAGGATTGA
1 GCATACGAA-A-TTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
15183384 TAGCAGGCAAGGTGGACCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCT-TCGGTTGGCCGAGT
64 CAGCACGCAAGGGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCT-GGTCGACTGAGT
* * *
15183448 GCCCGCACGCCCGTTTTGTGGGTTGGCTTAGACGTAGGGAGTTCATTCCATGTCTAAGCCCCAGC
128 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * *
15183513 CAGACCGAGGATTGTGGCAGCGAGACCGATAGCATGCAGAGGGGGACCGGGCCGACCCCCGGCTT
193 CAGACCAAGGGTTGTGGCAGCGGGACCGACAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTT
* ** * *
15183578 GCAAATTATGCCTCTCCGATCGGCTCAATGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
258 GCACATTATGCCTCTCCGATCGGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
15183638 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGACGGTTGCGGCCGCAGGATCGACA
1 GCATACGAAATTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
15183703 GCACACAGGGGGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCCGGTTGGCTGAGTGC
66 GCACGCA-AGGGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCTGGTCGACTGAGTGC
* * * * *
15183768 CCACACGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCA
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
15183816 AATCAAAGCT
Statistics
Matches: 688, Mismatches: 110, Indels: 26
0.83 0.13 0.03
Matches are distributed among these distances:
315 2 0.00
316 73 0.11
317 511 0.74
318 101 0.15
319 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (317 bp):
GCATACGAAATTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACCGGGCCGGTCCCCGGCTTGCACATTCTGCCTCTCTGGTCGACTGAGTGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCAAGGGTTGTGGCAGCGGGACCGACAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCA
CATTATGCCTCTCCGATCGGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:15184027 original size:26 final size:26
Alignment explanation
Indices: 15183993--15184045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15183983 GTTGATTTAG
15183993 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15184019 GCATTCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15184045 G
1 G
15184046 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15185078 original size:26 final size:26
Alignment explanation
Indices: 15185049--15185101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15185039 GTTGACTTAG
*
15185049 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
* *
15185075 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
15185101 G
1 G
15185102 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCCAGTCTAA
Found at i:15185395 original size:159 final size:158
Alignment explanation
Indices: 15185160--15185735 Score: 546
Period size: 159 Copynumber: 3.6 Consensus size: 158
15185150 GGGACCAGAT
* * * * *
15185160 CGATCCCTGGCTTGCGCATTCTACCTCTCCTACCGGCTGAGCGTCCGCACGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * ** *
15185225 TGGCTTTGGCATAGGGAGTTCATTTGATGTCTAAGCCCAAGCCGGATCGAGGGTTGTGGCAGCGG
66 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGA-CGAGGGTTGCGGCAGCGG
*
15185290 GTCCGACAGCACGCAGAGGGGGATCGAGC
130 GTCCGACAGCACGCAGAGGGGGATCGGGC
* * * * * **
15185319 CGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTTTTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* ** *** *
15185384 TGACTTAGGCATATGGAGTTCATTCCCGGTCTAAGATTGAA-CCAGACTGAGGGTTGCGGCAGCA
66 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAAGCCGGAC-GAGGGTTGCGGCAGC-
* * *
15185448 AGAT-CGACAGCATGCAG-GGGGGATCGGGC
128 GGGTCCGACAGCACGCAGAGGGGGATCGGGC
* * * * * * * * *
15185477 CGGTCCTCGGCTTACGCATTCTGTCTCTCCGACCGGCTGAGTGCCCGTATGCTTGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * * * *
15185542 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAAGGTTACGGTAGCGG
66 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGA-CGAGGGTTGCGGCAGCGG
* * * *
15185607 GACTGGCAGCACGCAGAGGGGGACCGGGC
130 GTCCGACAGCACGCAGAGGGGGATCGGGC
* ** * * ** * * * *
15185636 CGATCCCTGATTTGTGCATTCTACCTCTATGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGAGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
15185701 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG
15185736 TATACGGAGT
Statistics
Matches: 327, Mismatches: 83, Indels: 14
0.77 0.20 0.03
Matches are distributed among these distances:
157 2 0.01
158 118 0.36
159 203 0.62
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACGAGGGTTGCGGCAGCGGG
TCCGACAGCACGCAGAGGGGGATCGGGC
Found at i:15185681 original size:317 final size:317
Alignment explanation
Indices: 15185075--15185735 Score: 698
Period size: 317 Copynumber: 2.1 Consensus size: 317
15185065 CCCAGTCTAA
* * * * *
15185075 GCATATGCAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGCCAATAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTGCGCCAACAAGATCGACA
* * * * *
15185140 GTACGCAGCGGGGACCAGATCGATCCCTGGCTTGCGCATTCTACCTCTCCTACCGGCTGAGCGTC
66 GCACGCAGCGGGGACCAGACCGATCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCC
* * ** *
15185205 CGCACGCCCGTTTCATGGGTTGGCTTTGGCATAGGGAGTTCATTTGATGTCTAAGCCCAAGCCGG
131 CGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGA
* * ** * * *
15185270 ATCGAGGGTTGTGGCAGCGGGTCCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCG
196 ACCGAAGGTTACGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCG
* * * ** *
15185335 CATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTTTTGGGTTGACTTAG
261 CATTATACCTCTACGACCGACTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAG
* * *
15185392 GCATATGGAGTTCATTCCCGGTCTAAGATTGAACCAGA-CTGAGGGTTGCGGCAGCAAGATCGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGATTGAACCAGATC-GAGGGTTGCGCCAACAAGATCGAC
* * * * * * ** *
15185456 AGCATGCAGGGGGGATCGGGCCGGT-CCTCGGCTTACGCATTCTGTCTCTCCGACCGGCTGAGTG
65 AGCACGCAGCGGGGACCAGACCGATCCCT-GGCTTACGCATTCTACCTCTCCGACCGGCTGAGCG
* * ** * * *
15185520 CCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCC
* * * * * *
15185585 GAACCGAAGGTTACGGTAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGATTTG
194 GAACCGAAGGTTACGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTG
* * * * ** * ** *
15185650 TGCATTCTACCTCTATGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGAGTTGGCTTAG
259 CGCATTATACCTCTACGACCGACTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAG
*
15185709 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCA-GTCTAAG
15185736 TATACGGAGT
Statistics
Matches: 276, Mismatches: 65, Indels: 6
0.80 0.19 0.02
Matches are distributed among these distances:
316 6 0.02
317 270 0.98
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (317 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTGCGCCAACAAGATCGACA
GCACGCAGCGGGGACCAGACCGATCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGA
ACCGAAGGTTACGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCGACTTGCG
CATTATACCTCTACGACCGACTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAG
Found at i:15185741 original size:26 final size:26
Alignment explanation
Indices: 15185711--15185761 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15185701 TGGCTTAGGC
15185711 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
15185737 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15185762 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:15187121 original size:159 final size:158
Alignment explanation
Indices: 15186685--15187138 Score: 441
Period size: 158 Copynumber: 2.9 Consensus size: 158
15186675 AGCAGGACCA
* * * * *
15186685 GCAGCAGGATCGGCAGCAGGCAGGGGGGGACCGGGCTGATCCCCGACTTACGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCATGTA-GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTC
* ** * * ** *
15186750 CGA-TCGGCTGAGCACCCGTGCGCTCGTTTTGTGGGTTGACTTAGGCATACATAGTTCATCCCCA
65 CGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCA
*** * * *
15186814 -GTCTAATATCGGATCAGACTGAGGGTTGAG
128 TGTCTAAGCCCAGACCAGACCGAGGGTTGAG
*** * * * *
15186844 GCAGCAGGATCGACAGCATGTAGGGGGGACCAAACCGATCCTCGGTTTGCACATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCATGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
* * * * * * *
15186909 GAAC--GATCGAGCGCTCACACGCCCGTTTCGTGGTTTTGCTTAGGCATAGGGAGTTCATTCCAT
66 G-ACTGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* *
15186972 GTCTAAGCCCTAG-CCGGACCGAGGGTTGTG
129 GTCTAAGCCC-AGACCAGACCGAGGGTTGAG
* * * * *
15187002 GCAGCAGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCCCGGCTTCCGCATTCTACCTTTC
1 GCAGCAGGATCGACAGCATGTAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTC
*
15187067 CGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATG
65 CGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
15187132 TCTAAGC
130 TCTAAGC
15187139 ATACGGAGTT
Statistics
Matches: 233, Mismatches: 54, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 116 0.50
159 110 0.47
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCATGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
GACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCAGACCAGACCGAGGGTTGAG
Found at i:15187875 original size:26 final size:26
Alignment explanation
Indices: 15187838--15187890 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15187828 GTCGACTTAC
* *
15187838 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
*
15187864 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
15187890 G
1 G
15187891 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAGTCTAA
Found at i:15188216 original size:26 final size:26
Alignment explanation
Indices: 15188180--15188232 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15188170 GTCGACTTAG
15188180 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
15188206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15188232 G
1 G
15188233 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15188719 original size:26 final size:26
Alignment explanation
Indices: 15188680--15188732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15188670 GTTGGCTTAG
* *
15188680 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
15188706 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
15188732 G
1 G
15188733 ATTGAGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:15189113 original size:26 final size:26
Alignment explanation
Indices: 15189061--15189113 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15189051 GTTGAGCTAG
* *
15189061 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15189087 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15189113 G
1 G
15189114 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15189548 original size:158 final size:156
Alignment explanation
Indices: 15189087--15189587 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 156
15189077 CCCAGTTTAA
* * * *
15189087 GCATACAGAGTTCATTCC-TAGTCTAAGATCGAACCGGATCAAGGGTTACGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATC-AACTGGACCAAGGGTTGCGGCAGTAGGATCGAT
* * * *
15189151 AGCACGTAGGGGTACCAGGCCAATCCCCG-GCTTGCGCATTCTGCCTCTTCGACCGACTGAGCGC
64 AGCACGTAGGGGGACCAGGCCGATCCCCGAG-TTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
15189215 CCGCACG-TCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* ** * * * * *
15189244 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCT-GGACCGGA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAACT-GGACCAAGGGTTGCGGCAG-TAGGATC-GA
** *** * * * * *
15189308 CGTACGCA-G-AGGGGGACTGGGCCGATCATAGACTTGCTCATTTTGCCTCTTCGATCGGCTCAA
63 --TA-GCACGTAGGGGGACCAGGCCGATCCCCGAGTTGCGCATTCTGCCTCTTCGATCGGCTGAG
* * * * *
15189371 CGCCTGCATGCTTGTTTCGTGGGTTGACTTAT
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15189403 GCATACGGAGTTCATTCC-TAGTCTAAGATCTACTGGACCAAGGGTTGCGGTAGTAGGATTGATG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAACTGGACCAAGGGTTGCGGCAGTAGGATCGATA
* * * * *
15189467 GCACGTAGGCTGGGACCAAGCTGATCCCCGAGTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCTC
65 GCACGTAGG--GGGACCAGGCCGATCCCCGAGTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
15189532 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
15189561 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15189588 CATACGGAGT
Statistics
Matches: 266, Mismatches: 62, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
154 3 0.01
155 2 0.01
156 4 0.02
157 46 0.17
158 112 0.42
159 92 0.35
160 4 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACTGGACCAAGGGTTGCGGCAGTAGGATCGATAG
CACGTAGGGGGACCAGGCCGATCCCCGAGTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15189597 original size:26 final size:26
Alignment explanation
Indices: 15189561--15189613 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15189551 GTTGGCTTAG
15189561 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15189587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15189613 G
1 G
15189614 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15190324 original size:26 final size:26
Alignment explanation
Indices: 15190295--15190347 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15190285 GTTGACTTTG
15190295 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15190321 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15190347 G
1 G
15190348 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15190831 original size:26 final size:26
Alignment explanation
Indices: 15190802--15190854 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15190792 GTTGGCTTAG
*
15190802 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15190828 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15190854 G
1 G
15190855 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15191560 original size:26 final size:26
Alignment explanation
Indices: 15191524--15191576 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15191514 GTTGACTTAG
*
15191524 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15191550 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15191576 G
1 G
15191577 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15192042 original size:158 final size:157
Alignment explanation
Indices: 15191550--15192042 Score: 472
Period size: 158 Copynumber: 3.1 Consensus size: 157
15191540 CCCAGTCTAA
* * * * * *
15191550 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGATTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGATTGTGGCA-AAGGATCGACA
* * * * * * *
15191615 ACACGCAGGGGGGATCGGGTCGGTCCCCGGTTTACGCATTCTGCCTCTCCGACCGACTGAGCGCC
65 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
* *
15191680 TGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
** * ** * *
15191708 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGTTTGTGGCAATGAGA-CAG
1 GCATACAGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACCGAGGATTGTGGCAAAG-GATC-G
* * * * * * * * *
15191770 GCAGCACGCAGAGGAGGATTGGGTCAATCCCCGACTTGCGCATTATGCCTCTAT-AGCCTGCTCA
62 ACAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT-TCGGCCGGCTGA
* * * * *
15191834 GTGCCCGCACGCTCATTTCATGAGTTGACTTAT
125 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
15191867 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGATTGTGGCAA-AGGATCGACA
* * * * *
15191932 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCACTTCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
*
15191997 CGCATGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
* *
15192025 GCGTACAGAGTTAATTCC
1 GCATACAGAGTTCATTCC
15192043 ATGTCTAAGC
Statistics
Matches: 260, Mismatches: 64, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 131 0.50
159 118 0.45
160 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGATTGTGGCAAAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:15192050 original size:158 final size:157
Alignment explanation
Indices: 15191605--15192053 Score: 456
Period size: 159 Copynumber: 2.8 Consensus size: 157
15191595 TTGCGACAGT
* * * * * *
15191605 AGGATCGACAACACGCAGGGGGGATCGGGTCGGTCCCCGGTTTACGCATTCTGCCTCTCCGACCG
1 AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCG
* * * **
15191670 ACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* *
15191735 CCCCAGCCAGACCGAGGTTTGTGGCAA
131 CACCAGCCAGACCGAGGGTTGTGGCAA
* * * * * * * *
15191762 TGAGA-CAGGCAGCACGCAGAGGAGGATTGGGTCAATCCCCGACTTGCGCATTATGCCTCTAT-A
1 AG-GATC-GACAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT-TCG
* * * * * * * *
15191825 GCCTGCTCAGTGCCCGCACGCTCATTTCATGAGTTGACTTATGCATACAGAGTTCATTCCCA-AT
62 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGT
* *
15191889 CTAAG-ATCAGACCAGACCGAGGGTTGTGGTAA
126 CTAAGCACCAG-CCAGACCGAGGGTTGTGGCAA
* * * * *
15191921 CAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCACTTCGGTC
1 -AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC
* * *
15191986 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCGTACAGAGTTAATTCCATGTCTAA
65 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
15192051 GCA
130 GCA
15192054 TAGGGAGTTC
Statistics
Matches: 226, Mismatches: 55, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.03
158 99 0.44
159 116 0.51
160 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCG
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
CACCAGCCAGACCGAGGGTTGTGGCAA
Found at i:15193087 original size:159 final size:159
Alignment explanation
Indices: 15192771--15193278 Score: 443
Period size: 159 Copynumber: 3.2 Consensus size: 159
15192761 CCCAGTCTAA
* * ** * * * * *
15192771 GCATACAGAGTTCATTTC-TAGTCTAAGGTCAGACCAGACCGAGAGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCAAACCGGACCGAGGGTTGTGACAGCAGGATCAAC
* * * * * * * *
15192835 AACACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCG
65 AGCACGCAGAGGGGGACCAGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCG
* * * * *
15192899 CCCGCATGCCCGCTTCATGGGTTGGCTTAG
130 CTCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * ** * *
15192929 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGGCCGAGGGTTGTGGCAGTGGGA-CTGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGTGACAGCAGGATC-AAC
* * * * *
15192993 AGCACGCAGAGGGTGA-CTGGACTGATCCCCGGCTTACTCATTCTGCCTCTCCGATCGGCTCAGC
65 AGCACGCAGAGGGGGACCAGG-CTGATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGC
* *
15193057 GCTCGCACACTCGTTTCGTGGGTTGACTTAG
129 GCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
15193088 GCATACGTAGTTCATTCC-CGATCTAAGATCAAACCGGACCGAGGGTTGTGACAGCAGGATCAAC
1 GCATACGGAGTTCATTCCATG-TCTAAGCCCAAACCGGACCGAGGGTTGTGACAGCAGGATCAAC
* * * *
15193152 AGCACGCAGGGGGGGACCAGGCT-AGTTCCCGGCTTACACATTCTGACTCTCCGACCGGCTGAGT
65 AGCACGCAGAGGGGGACCAGGCTGA-TCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGC
15193216 GCCTGCATGCACGCTCGTTTCGTGGGTTGGCTTAG
129 G-CT-C--GCACGCTCGTTTCGTGGGTTGGCTTAG
* **
15193251 GTATATAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15193279 ATACGGAGTT
Statistics
Matches: 274, Mismatches: 63, Indels: 21
0.77 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 58 0.21
159 162 0.59
160 6 0.02
161 1 0.00
163 45 0.16
164 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGTGACAGCAGGATCAACA
GCACGCAGAGGGGGACCAGGCTGATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGC
TCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15193661 original size:26 final size:26
Alignment explanation
Indices: 15193631--15193680 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15193621 GTTGACTTAG
*
15193631 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
15193657 GCATACGGAATTCATTCCCAGTCT
1 GCATACGGAATTCATCCCCAGTCT
15193681 CAATCAGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:15194220 original size:26 final size:26
Alignment explanation
Indices: 15194184--15194236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15194174 GTTGACTTAG
15194184 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15194210 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15194236 G
1 G
15194237 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15194562 original size:26 final size:26
Alignment explanation
Indices: 15194526--15194578 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15194516 GTTGGCTTAG
*
15194526 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
15194552 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15194578 G
1 G
15194579 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15195750 original size:26 final size:26
Alignment explanation
Indices: 15195721--15195774 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
15195711 GGGTTGGCTT
*
15195721 AGCATACGGAGTTCATT-CCATGTCTA
1 AGCATACAGAGTTCATTCCCA-GTCTA
15195747 AGCATACAGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
15195773 AG
1 AG
15195775 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:15196078 original size:171 final size:170
Alignment explanation
Indices: 15195748--15196149 Score: 483
Period size: 171 Copynumber: 2.4 Consensus size: 170
15195738 CCATGTCTAA
*
15195748 GCATACAGAGTTCATTCCCA-GTCTAAG--ATCAGACCAGACCGAGGGTTGTAGTAGCAGGACCA
1 GCATACAGAGTTCATT-CCATGTCTAAGCCA-CAG-CCAGACCGAGGGTTGTGGTAGCAGGACCA
* * * * * * *
15195810 GCAGCAGGATCGATAGCACGTAGGGGGGACTGGGCTGATCCTCAGCTTGCGCATTCTACCTCTCC
63 GCAGCAGGATCGACAGCACGCAGGGAGGACCGAGCTGATCCCCAGCTTACGCATTCTACCTCTCC
* * *
15195875 AGCCGGTTGAGCACCCGTATGCTCATTTCATGGGTTGGCTTAG
128 AGCCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * * * *
15195918 GCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGTAGCAGGACCAGCA
*
15195983 G-TGAGATCGACAGCACGCAGTGGAGGACCGAGCTGATCCCC-GACTTACGCATTCTACCTCT-C
66 GCAG-GATCGACAGCACGCAG-GGAGGACCGAGCTGATCCCCAG-CTTACGCATTCTACCTCTCC
*
15196045 TGACCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAG
128 AG-CCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * * *
15196089 GGATAGAGAGTTCATTCCATGTCTAAGCCATAGCCAGACCGAGGGTTGTGGCAGCGGGACC
1 GCATACAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGTAGCAGGACC
15196150 GCAACACGTA
Statistics
Matches: 197, Mismatches: 28, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
169 4 0.02
170 67 0.34
171 126 0.64
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (170 bp):
GCATACAGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGTAGCAGGACCAGCA
GCAGGATCGACAGCACGCAGGGAGGACCGAGCTGATCCCCAGCTTACGCATTCTACCTCTCCAGC
CGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:15196453 original size:317 final size:318
Alignment explanation
Indices: 15196048--15196750 Score: 830
Period size: 317 Copynumber: 2.2 Consensus size: 318
15196038 ACCTCTCTGA
*
15196048 CCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGGATAGAGAGTTCATTCCATGTCT
1 CCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
* * * *
15196113 AAGCCATAGCCAGACCGAGGGTTGTGGCAGCGGGACCG-CAACACGTAGAGAGGG-ATCGGGTCG
66 AAGCCACAGCCAGACCGAGGGTTGTGGCAGCGAGACCGACAACACGCAGAG-GGGTATCGAGTCG
* * *
15196176 ATCCCCGGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCC-ACACGCTCGTTTCGTGGGTT
130 ATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGA-ACACTCGTTTCATGGGTT
** *
15196240 GACTTAGGCATACGAAGTTCATTCCCAATCTAAGATC-GAACCGGACCGAGGGTTGTGACAGCAA
194 GACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAG-ACCAAACCGAGGGTTGTGACACCAA
15196304 GATCGACAGCACGAAGGGTATGACCAGGTTAATACTCGGCTTGCCCATTCTGCCTTTCGGG
258 GATCGACAGCACGAAGGGTATGACCAGGTTAATACTCGGCTTGCCCATTCTGCCTTTCGGG
* * ** * * * *
15196365 CCGGTTGAGCCCCCGCATGCCTGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTTT
1 CCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
* * * * * *
15196430 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGTGAGACTGACAGCACGCAGAGGGGTATCGAGTTGA
66 AAGCCACAGCCAGACCGAGGGTTGTGGCAGCGAGACCGACAACACGCAGAGGGGTATCGAGTCGA
* *
15196495 TCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGAACACTCGTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGAACACTCGTTTCATGGGTTGA
* * * ** *
15196560 CTTAGGCATACGGAGTTCATTCCCAATGTAAGATCAGATCAAACCGAGGGTTGTGGTACCAGGAT
196 CTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGTGACACCAAGAT
* ** * * * * **
15196625 CGACAGCACGTAGGG-GGGACCAAGTTGAT-CT-GTGACTTGCACATTCT-ACTTCTCCAG
261 CGACAGCACGAAGGGTATGACCAGGTTAATACTCG-G-CTTGCCCATTCTGCCTT-TCGGG
* * ** * * * *
15196682 TCGGTTGGGTGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG-GAGTTCGTTCCATGTC
1 CCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTC
15196746 TAAGC
65 TAAGC
15196751 ATACGGAGTT
Statistics
Matches: 324, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
315 1 0.00
316 6 0.02
317 170 0.52
318 145 0.45
319 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (318 bp):
CCGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCT
AAGCCACAGCCAGACCGAGGGTTGTGGCAGCGAGACCGACAACACGCAGAGGGGTATCGAGTCGA
TCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGAACACTCGTTTCATGGGTTGA
CTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGTGACACCAAGAT
CGACAGCACGAAGGGTATGACCAGGTTAATACTCGGCTTGCCCATTCTGCCTTTCGGG
Found at i:15196501 original size:159 final size:159
Alignment explanation
Indices: 15195985--15196582 Score: 480
Period size: 159 Copynumber: 3.8 Consensus size: 159
15195975 GATCGGTAGT
* * * * * * * * *
15195985 GAGATCGACAGCACGCAGTGGAGGACCGAGCTGATCCCCGACTTACGCATTCTACCTC-TCTGAC
1 GAGATCGACAGCACGCAGAGG-GGATCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGGGC
** * * *
15196049 CGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGGATAGAGAGTTCATTCCATGTCTA
65 CGGTTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
**
15196114 AGCCATAGCCAGACCGAGGGTTGTGGCAGC
130 AGCCCCAGCCAGACCGAGGGTTGTGGCAGC
* * * * * * * *
15196144 GGGACCG-CAACACGTAGAGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTT-TGGT
1 GAGATCGACAGCACGCAGAG-GGGATCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGGGC
* * * * * * *
15196207 CGGCTCAGCACCCACACG-CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATC
65 CGGTTGAGCACCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTC
** * * * *
15196270 TAAGATCGAACCGGACCGAGGGTTGTGACAGC
128 TAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC
* * * * * * * *
15196302 AAGATCGACAGCACG-A-AGGGTATGACCAGGTTAATACTCGGCTTGCCCATTCTGCCT-TTCGG
1 GAGATCGACAGCACGCAGAGGGGAT--CGA-GTTGATCCCCGGCTTGCGCATTATGCCTCTTCGG
* * * *
15196364 GCCGGTTGAGCCCCCGCATGCCTGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTT
63 GCCGGTTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* *
15196429 TAAGCCCCAGTCAGACCGAGGGTTGTGGCAGT
128 TAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC
*
15196461 GAGA-CTGACAGCACGCAGAGGGGTATCGAGTTGATCCTCGGCTTGCGCATTATGCCTCTTC-GG
1 GAGATC-GACAGCACGCAGAGGGG-ATCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGGG
* * * * * * * * *
15196524 TCGGCTCAGCGCCCGAAC-ACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
64 CCGGTTGAGCACCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
15196583 CAATGTAAGA
Statistics
Matches: 336, Mismatches: 86, Indels: 34
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.01
157 3 0.01
158 123 0.37
159 192 0.57
160 8 0.02
161 4 0.01
162 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GAGATCGACAGCACGCAGAGGGGATCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGGGCC
GGTTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTGTGGCAGC
Found at i:15196630 original size:159 final size:160
Alignment explanation
Indices: 15196123--15196740 Score: 493
Period size: 159 Copynumber: 3.9 Consensus size: 160
15196113 AAGCCATAGC
* * * * * *
15196123 CAGACCGAGGGTTGTGGCAGCGGGACCG-CAACACGTAGAGAGGG-ATCGGGTCGATCCCCGGCT
1 CAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAG-GGGTATCGAGTTGATCCTCGGCT
* * *
15196186 TGCGCATTATGCCTCTTTGGTCGGCTCAGCACCC-ACACGCTCGTTTCGTGGGTTGACTTAGGCA
65 TGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGACACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
15196250 TACGAAGTTCATTCCCAATCTAAGATC-GAAC
130 TACGGAGTTCATTCCCAATGTAAGATCAG-AT
* * * * * *
15196281 CGGACCGAGGGTTGTGACAGCAAGATCGACAGCACG-A-A-GGGTATGACCAGGTTAATACTCGG
1 CAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGTAT--CGA-GTTGATCCTCGG
* * * * * * * * **
15196343 CTTGCCCATTCTGCCT-TTCGGGCCGGTTGAGCCCCCG-CATGC-CTGTTTCGTGGGTTGGTTTA
63 CTTGCGCATTATGCCTCTTC-GGTCGGCTCAGCGCCCGACACGCTC-GTTTCATGGGTTGACTTA
* **
15196405 GGCATAGGGAGTTCATT-CC-ATGTTTAAGCCCCAG-T
126 GGCATACGGAGTTCATTCCCAATG--TAAG-ATCAGAT
* *
15196440 CAGACCGAGGGTTGTGGCAG-TGAGA-CTGACAGCACGCAGAGGGGTATCGAGTTGATCCTCGGC
1 CAGACCGAGGGTTGTGGCAGCAG-GATC-GACAGCACGTAGAGGGGTATCGAGTTGATCCTCGGC
*
15196503 TTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGA-ACACTCGTTTCATGGGTTGACTTAGGC
64 TTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGACACGCTCGTTTCATGGGTTGACTTAGGC
15196567 ATACGGAGTTCATTCCCAATGTAAGATCAGAT
129 ATACGGAGTTCATTCCCAATGTAAGATCAGAT
* * * * * *
15196599 CAAACCGAGGGTTGTGGTACCAGGATCGACAGCACGTAG-GGGGGACCAAGTTGAT-CT-GTGAC
1 CAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGTATCGAGTTGATCCTCG-G-C
* * * * * * * ** * * *
15196661 TTGCACATTCTACTTCTCCAGTCGGTTGGGTGCCTG-CACGCTCGTTTCATGGGTTGGCTTAGGC
64 TTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGACACGCTCGTTTCATGGGTTGACTTAGGC
*
15196725 ATACGGAGTTCGTTCC
129 ATACGGAGTTCATTCC
15196741 ATGTCTAAGC
Statistics
Matches: 361, Mismatches: 71, Indels: 56
0.74 0.15 0.11
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 6 0.02
158 113 0.31
159 213 0.59
160 12 0.03
161 5 0.01
162 6 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (160 bp):
CAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGTATCGAGTTGATCCTCGGCTT
GCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGACACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAATGTAAGATCAGAT
Found at i:15196759 original size:26 final size:26
Alignment explanation
Indices: 15196723--15196775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15196713 GTTGGCTTAG
*
15196723 GCATACGGAGTTCGTTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15196749 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15196775 G
1 G
15196776 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15196971 original size:26 final size:26
Alignment explanation
Indices: 15196935--15196986 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15196925 TGACTTAGGC
*
15196935 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
*
15196961 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
15196987 TCAGACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGA
Found at i:15197311 original size:26 final size:26
Alignment explanation
Indices: 15197275--15197327 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15197265 GTTGGCTTAG
15197275 GCATATGGAGTTCATT-CCAAGTCTAA
1 GCATATGGAGTTCATTCCCAA-TCTAA
15197301 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
15197327 G
1 G
15197328 AGCTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:15198033 original size:26 final size:26
Alignment explanation
Indices: 15197996--15198048 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15197986 GTTGACTTAG
*
15197996 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
15198022 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
15198048 G
1 G
15198049 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15198719 original size:174 final size:174
Alignment explanation
Indices: 15198429--15198750 Score: 457
Period size: 174 Copynumber: 1.9 Consensus size: 174
15198419 GGTCAGTCCC
* * * *
15198429 CAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGACCGCACGCTCATTTCATGGGTTGGCTTA
1 CAGCTTGTGCATTCTACCTCTCCGATCAGCTGAGCGACCGCACGCTCATTTCATGGGTAGGCTTA
* * * * *
15198494 GGCATACAGATTTCATTCCATGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATTGGACTGGA
66 GGCATACAAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
15198559 CCGAGGGTTACAGCAGCACGCGGGGAGGGACCAGGTCGATCCTT
131 CCGAGGGTTACAGCAGCACGCGGGGAGGGACCAGGTCGATCCTT
* * * * ** *
15198603 CAGCTTGTGCATTCTACCTCTCTGATCAGCTGAG-TACCCGCATGCTCGTTTTGTGGGTAGGTTT
1 CAGCTTGTGCATTCTACCTCTCCGATCAGCTGAGCGA-CCGCACGCTCATTTCATGGGTAGGCTT
15198667 AGGCATACAAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGG
65 AGGCATACAAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * *
15198732 ACTGAGGGTTGCTGCAGCA
130 ACCGAGGGTTACAGCAGCA
15198751 GGATCGGTAG
Statistics
Matches: 128, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
173 1 0.01
174 127 0.99
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (174 bp):
CAGCTTGTGCATTCTACCTCTCCGATCAGCTGAGCGACCGCACGCTCATTTCATGGGTAGGCTTA
GGCATACAAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
CCGAGGGTTACAGCAGCACGCGGGGAGGGACCAGGTCGATCCTT
Found at i:15199228 original size:26 final size:26
Alignment explanation
Indices: 15199196--15199248 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15199186 GTTGACTTAG
15199196 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
15199222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15199248 G
1 G
15199249 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15199695 original size:158 final size:158
Alignment explanation
Indices: 15199222--15199892 Score: 573
Period size: 158 Copynumber: 4.2 Consensus size: 158
15199212 CCTAGTCTAA
* * * * **
15199222 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAG-AAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
* * * * * * * *
15199286 ACACGTAAGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGC
66 GCACATAGGGGGGATC-AGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGC
** * *
15199350 CCATACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
15199379 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGACAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGACCGA
* * * * * * *
15199442 CAGCACATAGAGGGGGATC-GGGCAGATCCCCGACTTGCACATTATGCCTCTCCGGCCAGCTCAA
64 CAGCACATAG-GGGGGATCAGGTC-GATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAG
* * * *
15199506 TGCCTGCACCCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
15199538 GCAAATGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
* ** * *
15199603 GCACATAGGGGGGATC-GGATCGATCCCCGGCTTGTGCATTCTGTCTCTCTGGCCAGCTGAGCAC
66 GCACATAGGGGGGATCAGG-TCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGC
* * *
15199667 CTGCACGCTTGTTTCGTGAGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
15199696 GCATACGTAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGACC-G--
* * *
15199761 ACAAGATTGGCAACACGCAGGGGGGATCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCTGGC
63 AC---A---GC-ACA--TAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGC
* * *
15199826 CAGCTGAGCTCCCGCATGCTCGTTTCATGGGTTGGCTTAG
119 CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
15199866 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15199893 GATACGGAGT
Statistics
Matches: 411, Mismatches: 80, Indels: 33
0.78 0.15 0.06
Matches are distributed among these distances:
156 4 0.01
157 40 0.10
158 133 0.32
159 119 0.29
160 6 0.01
161 2 0.00
164 1 0.00
167 2 0.00
168 3 0.01
169 3 0.01
170 96 0.23
171 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACATAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15199898 original size:26 final size:26
Alignment explanation
Indices: 15199868--15199918 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15199858 TGGCTTAGGC
15199868 ATACGGAGTTCA-TTCCATGTCTAAGG
1 ATACGGAGTTCATTTCCA-GTCTAAGG
15199894 ATACGGAGTTCATTTCCAGTCTAAG
1 ATACGGAGTTCATTTCCAGTCTAAG
15199919 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTTCCAGTCTAAGG
Done.