Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 120 of 402
Found at i:15200045 original size:196 final size:196
Alignment explanation
Indices: 15199698--15200088 Score: 504
Period size: 196 Copynumber: 2.0 Consensus size: 196
15199688 TGGCTTAGGC
* * *
15199698 ATACGTAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGACCAGCAAC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGATAGCAGGACCAGCAAC
* * * *
15199763 AAGATTGGCAACACGCAGGGGGGATCAGGTCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCA
66 AAGATTGGCAACACACAGGGGGGATCAGGCCAATCCCCGACTTACGCATTCTACCTCTCTGGCCA
* *
15199828 GCTGAGCTCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
131 GCTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
15199893 G
196 G
* * *
15199894 ATACGGAGTTCATTTCCAGTCTAAGATCGGATCAGA-CTGAGGGTTGCGATAGCAGGACCAGCAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATC-GAGGGTTGCGATAGCAGGACCAGCAA
* * * ** *
15199958 CAAGATTGGTAGCACATAGGGGGGATC-GAGCCAATCCCCGACTTGTGCATTCTGCCTCT-TCGG
65 CAAGATTGGCAACACACAGGGGGGATCAG-GCCAATCCCCGACTTACGCATTCTACCTCTCT-GG
* * * *
15200021 TC-GACTGAG-TGCTCGCACGCTCGTTTCATGTGTTGGCTTAGGCATACAGAGTTCATTCTATGT
128 CCAG-CTGAGCT-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
15200084 CTAAG
191 CTAAG
15200089 CCCTAGCCGG
Statistics
Matches: 168, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
195 5 0.03
196 163 0.97
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGATAGCAGGACCAGCAAC
AAGATTGGCAACACACAGGGGGGATCAGGCCAATCCCCGACTTACGCATTCTACCTCTCTGGCCA
GCTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
G
Found at i:15200263 original size:26 final size:26
Alignment explanation
Indices: 15200233--15200285 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15200223 GTTGACTTAG
*
15200233 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15200259 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15200285 G
1 G
15200286 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15200896 original size:185 final size:185
Alignment explanation
Indices: 15200577--15200945 Score: 456
Period size: 185 Copynumber: 2.0 Consensus size: 185
15200567 TTGACTTAGG
* * *
15200577 CATACGGAGTTCATTCCTGATCTAAGATTGGACCGAACCAAGGGTTAGGGTAGCAGGATCGACAG
1 CATACGGAGTTCATTCCAGATCTAAGATCGGACCGAACCAAGGGTTACGGTAGCAGGATCGACAG
* * * * * *
15200642 CACGCAGGGGGGCACCGGGTCGATCCCCGACTCACGCATTCTGCCTCTCTGGTCGGCTAAGCACC
66 AACGCAGGGGGGCACCGGGCCGATCCCCGACTCACGAATTCTGCCTCTCCGATCGACTAAGCACC
*
15200707 CGCACGCTCGTTACGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAT
131 CGCACGCTCGTTACGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCA-GTCTAAT
* * * ** *
15200762 CATATGGAGTTCATTCCCAG-TCTATGATCGGACCGGACTGAGGGTTACGGTAGCAGGATTGACA
1 CATACGGAGTTCATT-CCAGATCTAAGATCGGACCGAACCAAGGGTTACGGTAGCAGGATCGACA
* * *** * * *
15200826 GAACGCAGGGGTGG-ACCTGGCCGATCCCCGGCTTGTGAATTTTGCCTCTCCGATCGACTGAGCG
65 GAACGCAGGGG-GGCACCGGGCCGATCCCCGACTCACGAATTCTGCCTCTCCGATCGACTAAGCA
* *
15200890 CCCGCACGCTTGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAA
129 CCCGCACGCTCGTTACGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAA
15200946 GATTGGATCG
Statistics
Matches: 155, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
185 147 0.95
186 8 0.05
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
CATACGGAGTTCATTCCAGATCTAAGATCGGACCGAACCAAGGGTTACGGTAGCAGGATCGACAG
AACGCAGGGGGGCACCGGGCCGATCCCCGACTCACGAATTCTGCCTCTCCGATCGACTAAGCACC
CGCACGCTCGTTACGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAT
Found at i:15201305 original size:26 final size:26
Alignment explanation
Indices: 15201275--15201327 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15201265 GTTGACTTAG
15201275 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15201301 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15201327 G
1 G
15201328 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15201789 original size:159 final size:166
Alignment explanation
Indices: 15201533--15201963 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 166
15201523 AGCATGCAGA
* * ** * * * * ** * *
15201533 GGGGGATCGGGCCGATCCCTGGCTTACACGTTATGCCTCTCCAACTGGCTCAGCACTTGCACGCT
1 GGGGGACCGGGCAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCTGCACGCT
* * * *
15201598 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGG
66 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCACAATCTAAGATCAGACCAGACCAAGGG
*
15201663 TTACAGTAGTAGG-A-T-C-GA-CAACA-CACA-GG
131 TTACAGTAGCAGGCAGTACAGATCAACAGCACACGG
* * * * * *
15201692 GGGGGATCGGGCAGATCCCCGGCTTACGGATTCTGCCTCTCTGGCCAGTTGAGCACCTGCACGCT
1 GGGGGACCGGGCAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCTGCACGCT
* * * * * **
15201757 CGTTTCATGGGTTGGCTTAGGCATA-TGTAGTTCATTCATAGTCTAAGATCGGATCAGACTGAGG
66 CGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCACAATCTAAGATCAGACCAGACCAAGG
* *
15201821 GTTGCAGTAGCAGGACCAGTAGCAGGATCGACAGCACACGG
130 GTTACAGTAGCAGG--CAGTA-CA-GATCAACAGCACACGG
* * **
15201862 GGGGGACCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCTTCTGCACGCT
1 GGGGGACCGGGCAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCTGCACGCT
* * * *
15201927 CATTTCATGGGTTGGCTTAGGTATACGGAGTTTATTC
66 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTC
15201964 CATGTCTAAC
Statistics
Matches: 217, Mismatches: 42, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
158 1 0.00
159 114 0.53
162 1 0.00
163 1 0.00
165 1 0.00
167 2 0.01
168 4 0.02
169 4 0.02
170 88 0.41
171 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (166 bp):
GGGGGACCGGGCAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCACCTGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCACAATCTAAGATCAGACCAGACCAAGGG
TTACAGTAGCAGGCAGTACAGATCAACAGCACACGG
Found at i:15202151 original size:26 final size:26
Alignment explanation
Indices: 15202115--15202165 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15202105 TTTACTTAGG
15202115 CATACGGAGTTCATGCCCAGTCTAAT
1 CATACGGAGTTCATGCCCAGTCTAAT
*
15202141 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATGCCCAGTCTAA
15202166 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATGCCCAGTCTAAT
Found at i:15202335 original size:25 final size:26
Alignment explanation
Indices: 15202297--15202348 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15202287 GTAGGCTTAG
**
15202297 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15202323 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15202348 G
1 G
15202349 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15202871 original size:159 final size:161
Alignment explanation
Indices: 15202652--15203011 Score: 388
Period size: 170 Copynumber: 2.2 Consensus size: 161
15202642 ACTCGTTCCA
* *
15202652 TGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAATGAAGGTT-A-C-
1 TGGGTT-ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTTAAGCA
*
15202714 GG-CAGCAGGATCGACAGCATGAAGGAGGGGACCGGGTCAG-TCCCCGGCTTGCACATTTTGCCT
65 GGACAGCAGGATCGACAGCATGAAGG-GGGGACCGGG-CAGATCCCCGGCTTGCACATTCTGCCT
* ** *
15202777 CTCCGGCCGGTTGAGTGCCCGCATGCTCGTTTTG
128 CTCCGACCGGTTGAGCACCCGCATGCTCATTTTG
** * * *
15202811 TGGGTTACCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGAC
1 TGGGTTA-CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTT---A-
* * * * *
15202876 AGCAGGACCAACAGCAGGATCGGCAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
61 AGCAGG----ACAGCAGGATCGACAGCATGAAGGGGGGACCGGGCAGATCCCCGGCTTGCACATT
* *
15202941 CTGCCTCTTCGATCGGTTGAGCACCCGCATGCTCATTTTG
122 CTGCCTCTCCGACCGGTTGAGCACCCGCATGCTCATTTTG
*
15202981 TGGGTTGGCTTAGGCATACAGAGTTCATTCC
1 TGGGTT-ACTTAGGCATACAGAGTTCATTCC
15203012 ATGTCTAGGC
Statistics
Matches: 166, Mismatches: 20, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
158 1 0.01
159 51 0.31
164 1 0.01
165 1 0.01
166 2 0.01
169 2 0.01
170 87 0.52
171 21 0.13
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (161 bp):
TGGGTTACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAAGGTTAAGCAG
GACAGCAGGATCGACAGCATGAAGGGGGGACCGGGCAGATCCCCGGCTTGCACATTCTGCCTCTC
CGACCGGTTGAGCACCCGCATGCTCATTTTG
Found at i:15203032 original size:170 final size:170
Alignment explanation
Indices: 15202716--15203103 Score: 447
Period size: 170 Copynumber: 2.3 Consensus size: 170
15202706 AAGGTTACGG
* * *
15202716 CAGCAGGATCGACAGCATGAAGGAGGGGACCGGGTC-AGTCCCCGGCTTGCACATTTTGCCTCTC
1 CAGCAGGATCGACAGCATGCAGG-GGGGACCGGGCCGA-TCCCCGGCTTGCACATTCTGCCTCTC
* ** *
15202780 CGGCCGGTTGAGTGCCCGCATGCTCGTTTTGTGGGTTACCTTAGGCATACAGAGTTCATTCCCAG
64 CGACCGGTTGAGCACCCGCATGCTCATTTTGTGGGTTACCTTAGGCATACAGAGTTCATTCCCAG
****
15202845 TCTAAGATTGGACTGGACCGAGGGTTACGACAGCAGGACCAA
129 TCTAAGACCCAACTGGACCGAGGGTTACGACAGCAGGACCAA
* * * *
15202887 CAGCAGGATCGGCAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCG
1 CAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCG
* **
15202952 ATCGGTTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGT
66 ACCGGTTGAGCACCCGCATGCTCATTTTGTGGGTTACCTTAGGCATACAGAGTTCATTCCCA-GT
* * ** ** * **
15203016 CTAGGCCCCAACTGGACCGAGGGTTGTGGTAGCAGGATCGG
130 CTAAGACCCAACTGGACCGAGGGTTACGACAGCAGGACCAA
* * * *
15203057 CAGCAGGATCAACAGCATGCAGAGGGGGACCAGGCTGATCTCCGGCT
1 CAGCAGGATCGACAGCATGCAG-GGGGGACCGGGCCGATCCCCGGCT
15203104 CATTTCGTGG
Statistics
Matches: 181, Mismatches: 33, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
169 3 0.02
170 136 0.75
171 42 0.23
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.22
Consensus pattern (170 bp):
CAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCG
ACCGGTTGAGCACCCGCATGCTCATTTTGTGGGTTACCTTAGGCATACAGAGTTCATTCCCAGTC
TAAGACCCAACTGGACCGAGGGTTACGACAGCAGGACCAA
Found at i:15203160 original size:26 final size:26
Alignment explanation
Indices: 15203124--15203202 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15203114 GTTGACTTAG
15203124 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
15203150 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15203176 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
15203202 G
1 G
15203203 ATCGGACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:15204459 original size:158 final size:154
Alignment explanation
Indices: 15204076--15204565 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 154
15204066 GCAAATGGCA
* *
15204076 TTCATTCCCA-GTCTAAGATCTAACCGGATCGAGGGTTGCGACATCAGGATCGACAACACGCAGG
1 TTCATT-CCATGTCTAAGATC-AACC-GAACGAGGGTTGCGACACCAGGATCGACAACACGCAGG
* ** *
15204140 AGGGACCAGGCCGATCCCCGACTTGCGAATTCTGCCTCTCCGATCGGCTAAGTGCCTGCACGTCT
63 AGGGACCAGGCTGATCCCCG-CTTGCTCATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACGTC-
* * * *
15204205 GTTTCATGGGTTGGCTTAGGCATAGGGAG
126 ATTTCGTGGGTTGGCTTAGGCATACGAAG
* * * * ** ** * * * *
15204234 TTCATTCCATGTCTAAGACCCAACGGAGCTAGGGTTATGGTAGCGGGACCGACAGCACGCAGAGA
1 TTCATTCCATGTCTAAGA-TCAACCGAACGAGGGTTGCGACACCAGGATCGACAACACGCAG-GA
* * * *
15204299 GGGACCAAGCTGATCCCCTGCTTGCTCATTATGCCTCTCCGATCAGCTCAGTGCCCGCACGCTCA
64 GGGACCAGGCTGATCCCC-GCTTGCTCATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACG-TCA
*
15204364 TTTCGTGGGTTGACTTAGGCATACGAAG
127 TTTCGTGGGTTGGCTTAGGCATACGAAG
* *
15204392 TTCATTCC-TAGTCTAAGATCAGACCGAACAGAGGGTTGCGACACCAGGATCGATAACACGTAGG
1 TTCATTCCAT-GTCTAAGATCA-ACCGAAC-GAGGGTTGCGACACCAGGATCGACAACACGCAGG
* * * * **
15204456 AGGGATC-GGGTCG-TCCCCAGCTTG-TGCATTCTGCCTCTCTGA-CTGGCTGAGCACCCGCACG
63 AGGGACCAGGCT-GATCCCC-GCTTGCT-CATTCTGCCTCTCCGATC-GGCTAAGTGCCCGCACG
* *
15204517 TTCTTTTTGTGGGTTGGCTTAGGCATACGAAG
124 -TCATTTCGTGGGTTGGCTTAGGCATACGAAG
15204549 TTCATTCCATGTCTAAG
1 TTCATTCCATGTCTAAG
15204566 CATACGGAGT
Statistics
Matches: 267, Mismatches: 53, Indels: 25
0.77 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 115 0.43
158 124 0.46
159 26 0.10
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (154 bp):
TTCATTCCATGTCTAAGATCAACCGAACGAGGGTTGCGACACCAGGATCGACAACACGCAGGAGG
GACCAGGCTGATCCCCGCTTGCTCATTCTGCCTCTCCGATCGGCTAAGTGCCCGCACGTCATTTC
GTGGGTTGGCTTAGGCATACGAAG
Found at i:15204576 original size:26 final size:26
Alignment explanation
Indices: 15204539--15204591 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15204529 GTTGGCTTAG
15204539 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15204565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15204591 G
1 G
15204592 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15204896 original size:26 final size:26
Alignment explanation
Indices: 15204846--15204898 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15204836 GTTGACTTAG
*
15204846 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
*
15204872 GCATATAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
15204898 G
1 G
15204899 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:15205243 original size:159 final size:157
Alignment explanation
Indices: 15204872--15205304 Score: 453
Period size: 159 Copynumber: 2.7 Consensus size: 157
15204862 CCTAGTCTAA
* * *
15204872 GCATATAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGTGGTAGTAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGACA
* * * * * *
15204937 GCACGTAGTGGGGATTGGGTCGATCCCCGACTTACGTATTCTGCCTCTCCGATCGACTGAGCACC
66 GCACGTAGAGGGGA-TGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
* * *
15205002 CGCACACCTGTTTCGTGGGTTGGCTTAG
130 CGCACACCTATTTCATGGGTTGACTTAG
* ** * * * *
15205030 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGTAGCGGGATCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGA
* * * * *
15205093 CAGCACGCAAAAGGGGACTGGATCGATCCCTGGCTTGCGCATTATGCCTCTCC-AGCCGACTTAG
64 CAGCACG-TAGAGGGGA-TGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAG
*
15205157 CACCTG-A-ACGCTCATTTCATGGGTTGACTTAG
126 CACCCGCACAC-CT-ATTTCATGGGTTGACTTAG
* * * **
15205189 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGATTGCAGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGACA
* * *
15205254 GCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGTGCTTTCTGCCTCTCCG
66 GCACGTAGAGGGGAT-GGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCG
15205305 GTCGGCTGAG
Statistics
Matches: 220, Mismatches: 45, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.03
158 94 0.43
159 117 0.53
160 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGACA
GCACGTAGAGGGGATGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC
GCACACCTATTTCATGGGTTGACTTAG
Found at i:15205359 original size:158 final size:157
Alignment explanation
Indices: 15204879--15205364 Score: 487
Period size: 158 Copynumber: 3.1 Consensus size: 157
15204869 TAAGCATATA
* *
15204879 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGTGGTAGTAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGACAGCACGTA
* * * * * * *
15204944 GTGGGGATTGGGTCGATCCCCGACTTACG-TATTCTGCCTCTCCGATCGACTGAGCACCCGCACA
66 GAGGGGATCGGGTCGATCCCTGGCTTGCGCT-TTCTGCCTCTCCGGTCGACTGAGCA-CCGCACG
*
15205008 C-CTGTTTCGTGGGTTGGCTTAGGCATAGG
129 CTC-GTTTCGTGGGTTGGCTTAGGCATACG
** * * * *
15205037 GAGTTCATT-CCATGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGTAGCGGGATCGACAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGACAGCACG
* * * * * * * * *
15205100 CAAAAGGGGA-CTGGATCGATCCCTGGCTTGCGCATTATGCCTCTCCAGCCGACTTAGCACCTGA
64 -TAGAGGGGATC-GGGTCGATCCCTGGCTTGCGCTTTCTGCCTCTCCGGTCGACTGAGCACC-GC
* * * *
15205164 ACGCTCATTTCATGGGTTGACTTAGGCATATG
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * **
15205196 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGATTGCAGTAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGACAGCACGTA
* * * * *
15205261 GGGGGGATCGGGTCGATCCCTGGCTTGTGCTTTCTGCCTCTCCGGTCGGCTGAGCGCTCGCATGC
66 GAGGGGATCGGGTCGATCCCTGGCTTGCGCTTTCTGCCTCTCCGGTCGACTGAGCAC-CGCACGC
*
15205326 TCGTTTTGTGGGTTGGCTTAGGCATACG
130 TCGTTTCGTGGGTTGGCTTAGGCATACG
*
15205354 AAGTTCATTCC
1 GAGTTCATTCC
15205365 ATGTCTTAGC
Statistics
Matches: 258, Mismatches: 59, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 133 0.52
159 118 0.46
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAGGATCGACAGCACGTA
GAGGGGATCGGGTCGATCCCTGGCTTGCGCTTTCTGCCTCTCCGGTCGACTGAGCACCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:15205524 original size:184 final size:185
Alignment explanation
Indices: 15205184--15205552 Score: 449
Period size: 184 Copynumber: 2.0 Consensus size: 185
15205174 CATGGGTTGA
* ** * * *
15205184 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGATTGCAGTAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGATTACAGTAGCAAGAT
** * * * * * * *
15205249 CGACAGCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGTGCTTTCTGCCTCTCCGGTCGGCTGA
66 CGACAGCACACAAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGACTGA
* **
15205314 GCGCTCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
131 GCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
* * * * *
15205369 CTTA-GCATACGGAGTTCATTCCCAGTTTAAGATTAAACCAGACCGAGGGTTACGGTAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGATTACAGTAGCAAGAT
*
15205433 CGACAGCATACAAGGGGGACCGAGCCGAT-CCTCGGCTTGTGCATTCTGCCTCTCCGGCCGACTG
66 CGACAGCACACAAGGGGGACCGAGCCGATCCCT-GGCTTGTGCATTCTGCCTCTCCGGCCGACTG
* *
15205497 AGTAC-CT-GCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
130 AG--CGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
15205553 TTAAGCCCCA
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
183 3 0.02
184 145 0.94
185 6 0.04
186 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (185 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGATTACAGTAGCAAGAT
CGACAGCACACAAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGACTGA
GCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
Found at i:15205743 original size:25 final size:26
Alignment explanation
Indices: 15205715--15205766 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15205705 GTTGACTTAG
*
15205715 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
15205740 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
15205766 G
1 G
15205767 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:15206244 original size:26 final size:26
Alignment explanation
Indices: 15206215--15206267 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15206205 GTTGGCTTAG
15206215 GCATACAGAGTTCATTCC-ACGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
** *
15206241 GCATATGGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15206267 G
1 G
15206268 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15206596 original size:26 final size:26
Alignment explanation
Indices: 15206567--15206619 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15206557 GTTGAGTTAG
*
15206567 GCATACGAAGTTCATCCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
** *
15206593 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15206619 G
1 G
15206620 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15206939 original size:26 final size:26
Alignment explanation
Indices: 15206910--15206962 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15206900 GTTAGCTTAG
* *
15206910 GCATATGGATTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15206936 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15206962 G
1 G
15206963 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15207664 original size:26 final size:26
Alignment explanation
Indices: 15207634--15207686 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15207624 GTTGACTTAG
* *
15207634 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
*
15207660 GCATACAGAGTTCATATCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
15207686 G
1 G
15207687 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:15208128 original size:26 final size:25
Alignment explanation
Indices: 15208094--15208145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
15208084 GTTAGCTTAG
15208094 GCATAGGAGTTCATT-CCATGTCTAA
1 GCATAGGAGTTCATTCCCA-GTCTAA
15208119 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATTCCCAGTCTAA
15208145 G
1 G
15208146 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 17 0.68
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCCAGTCTAA
Found at i:15208863 original size:26 final size:25
Alignment explanation
Indices: 15208827--15208878 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15208817 GTGGACTTAG
15208827 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCC-AGTCTAA
*
15208853 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
15208878 G
1 G
15208879 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:15209356 original size:26 final size:26
Alignment explanation
Indices: 15209327--15209379 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15209317 GTTGGCTTAG
*
15209327 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
*
15209353 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
15209379 G
1 G
15209380 ATTTTGAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:15210091 original size:26 final size:26
Alignment explanation
Indices: 15210043--15210093 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15210033 GTTGACTTAG
*
15210043 GCATACAGAGTTCATCCTGAGTCTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
*
15210069 GCATATAGAGTTCATTCC-CAGTCTA
1 GCATACAGAGTTCA-TCCTCAGTCTA
15210094 GGAACGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAGTCTAA
Found at i:15210445 original size:158 final size:158
Alignment explanation
Indices: 15210076--15210445 Score: 377
Period size: 158 Copynumber: 2.3 Consensus size: 158
15210066 TAAGCATATA
* ** * * * *
15210076 GAGTTCATTCCCAGTCTAGGAACGGACCGGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCTAGTCTAACAACAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCA
* * * *
15210141 GGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCTGCACGC
66 GGGGGGACCGAGCCGATCCCTAGCTTGCGCATTATACCTCTCCGACCAGCTGAGCGCCTGCACGC
* * * *
15210206 CCGTTTTGTGGGTTGGCTTAGGCATAGG
131 CCGTTTCGTGGGTTGACCTAGGCATACG
* ** * ** *
15210234 GAGTTCATTCCTTGTCTAAGCCCCAG-CGGGACCGAGGGTTGTTGCAGCGGGACCGACAGCACGC
1 GAGTTCATTCCTAGTCTAA-CAACAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGC
* * * * * ** *
15210298 AGAGGGGGACCGATCCGAT-CCTCAGCTTGCGCATTATGCCTTTTCGGCTGGCTTAGCGCC-GCA
65 AG-GGGGGACCGAGCCGATCCCT-AGCTTGCGCATTATACCTCTCCGACCAGCTGAGCGCCTGCA
*
15210361 CGCTCGTTTCGTGGGTTGACCTAGGCATACG
128 CGCCCGTTTCGTGGGTTGACCTAGGCATACG
* * * *
15210392 GAGTTCATTCCTAGTCTAACATCAGACCAGACCGAGGGTTACGGTAGCAGGACC
1 GAGTTCATTCCTAGTCTAACAACAGACCGGACCGAGGGTTGCGGCAGCAGGACC
15210446 AGTAGCAGGA
Statistics
Matches: 167, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 120 0.72
159 43 0.26
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (158 bp):
GAGTTCATTCCTAGTCTAACAACAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCA
GGGGGGACCGAGCCGATCCCTAGCTTGCGCATTATACCTCTCCGACCAGCTGAGCGCCTGCACGC
CCGTTTCGTGGGTTGACCTAGGCATACG
Found at i:15212547 original size:26 final size:26
Alignment explanation
Indices: 15212511--15212562 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15212501 GTTGGCGTAG
15212511 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15212537 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15212563 CCTACGGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15213170 original size:26 final size:26
Alignment explanation
Indices: 15213130--15213185 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
15213120 TGGGTTGACT
* *
15213130 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* *
15213156 TAAGCATACGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
15213182 TAAG
1 TAAG
15213186 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:15213347 original size:26 final size:26
Alignment explanation
Indices: 15213317--15213369 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15213307 GTTGGCTTAG
* *
15213317 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
15213343 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
15213369 G
1 G
15213370 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:15213470 original size:22 final size:22
Alignment explanation
Indices: 15213439--15213486 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
15213429 CTTGGGGCAC
15213439 CATCGCCGGAGCACCATCGAAG
1 CATCGCCGGAGCACCATCGAAG
* * *
15213461 CATCGTCGGAGCATCGTCGAAG
1 CATCGCCGGAGCACCATCGAAG
15213483 CATC
1 CATC
15213487 ACTGGAGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.25, C:0.33, G:0.27, T:0.15
Consensus pattern (22 bp):
CATCGCCGGAGCACCATCGAAG
Found at i:15213473 original size:11 final size:11
Alignment explanation
Indices: 15213455--15213486 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
15213445 CGGAGCACCA
15213455 TCGAAGCATCG
1 TCGAAGCATCG
*
15213466 TCGGAGCATCG
1 TCGAAGCATCG
15213477 TCGAAGCATC
1 TCGAAGCATC
15213487 ACTGGAGAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (11 bp):
TCGAAGCATCG
Found at i:15214033 original size:26 final size:26
Alignment explanation
Indices: 15213996--15214048 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15213986 GTTGACTTTG
*
15213996 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGAAGTTCACCCCCAGTCTAA
**
15214022 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACCCCCAGTCTAA
15214048 G
1 G
15214049 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCACCCCCAGTCTAA
Found at i:15214909 original size:26 final size:26
Alignment explanation
Indices: 15214879--15214931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15214869 GCTGACTTAG
15214879 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15214905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15214931 G
1 G
15214932 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15215875 original size:159 final size:158
Alignment explanation
Indices: 15215669--15216076 Score: 426
Period size: 159 Copynumber: 2.6 Consensus size: 158
15215659 CGATCTTTAG
* * * * * *
15215669 CTTGTGCATTTTGCCTCTCC-AGCTGGCTGAGCGCCCGCACACCCGTTTCATGGGTCGGCTTAGG
1 CTTGCGCATTATGCCTCTCCGA-CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * * *
15215733 CATAGGGAGTTCATTCCATGTCTAACCCCCAG-CCAGACCGAGGGTTGTGGCAAC-GAGACCGAC
65 CATACGGAGTTCATTCC-TGTCTAA-CACCAGACCAGACCAAGGGTTGCGGCAACAG-GACCGAC
*
15215796 AGCAAGCAAAGGGGGACCAGGCTGATCCCCGA
127 AGCAAGCAAAGGGGGACCAGGCCGATCCCCGA
* * * *
15215828 CTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * * * * *
15215893 ATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGATAGC
66 ATACGGAGTTCATTCCT-GTCTAACACCAGACCAGACCAAGGGTTGCGGCAACAGGACCGACAGC
* ** * * *
15215958 ACGCAGGGGGGGATCGGGCCGATCCCCGG
130 AAGCAAAGGGGGACCAGGCCGATCCCCGA
* * * * *
15215987 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACTCACACGCTCGTTTTAATGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCG-TTTCATGGGTTGGCTTAGG
15216052 CATACGGAGTTCATTCCGTGTCTAA
65 CATACGGAGTTCATTCC-TGTCTAA
15216077 GCATATGGAG
Statistics
Matches: 204, Mismatches: 39, Indels: 11
0.80 0.15 0.04
Matches are distributed among these distances:
158 3 0.01
159 160 0.78
160 40 0.20
161 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (158 bp):
CTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCTGTCTAACACCAGACCAGACCAAGGGTTGCGGCAACAGGACCGACAGCA
AGCAAAGGGGGACCAGGCCGATCCCCGA
Found at i:15216087 original size:26 final size:26
Alignment explanation
Indices: 15216051--15216103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15216041 GTTGGCTTAG
15216051 GCATACGGAGTTCATTCCGT-GTCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
*
15216077 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15216103 G
1 G
15216104 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15216278 original size:26 final size:26
Alignment explanation
Indices: 15216248--15216300 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15216238 GTTGACTTAG
*
15216248 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
15216274 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15216300 G
1 G
15216301 ATCGGTCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15216290 original size:197 final size:198
Alignment explanation
Indices: 15215943--15216459 Score: 519
Period size: 184 Copynumber: 2.7 Consensus size: 198
15215933 GGGTTGCGGC
* * * * *
15215943 AGCAGGATCGATAGCACGCAGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
1 AGCAAGATCGATAGCACGCAGCGAGGGATCGAGCCGATCACCGGCTTGCGCATTCTGCCTCTCCG
* * * * * *
15216008 ACCGGCTGAGCACTCACACGCTCGTTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGT
66 ACCGACTAAGCACCCACACGCTCGATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGT
* * *
15216073 CTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTAGTAGTAGGACC
131 CTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGTAGTAGGACC
15216138 AGT
196 AGT
* * * * *
15216141 AGCAAGATCGGTAGCACGCAGCGAGGGATCGAGTCGATCACTGGCTTGCGCCTTCTGCCTCTCTG
1 AGCAAGATCGATAGCACGCAGCGAGGGATCGAGCCGATCACCGGCTTGCGCATTCTGCCTCTCCG
* * * * *
15216206 ATCGACTAAGCGCCCGCACTCTC-ATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAG
66 ACCGACTAAGCACCCACACGCTCGATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCT-G
* * * *
15216269 TCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGTCTGGACCGA-GG--GT--T-G--CGA-
130 TCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGTAGTAGGAC
15216325 C---
195 CAGT
* * * * * * * *
15216326 AGCAGGATTGGTAGCACGCAG-GGGGGA-CAGGGCCGATCCCCGGTTTGCGCATTTTGCCTCTCC
1 AGCAAGATCGATAGCACGCAGCGAGGGATC-GAGCCGATCACCGGCTTGCGCATTCTGCCTCTCC
* * * * * *
15216389 GACCGGCTAAGCACCCACATGCCCG-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
65 GACCGACTAAGCACCCACACGCTCGATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCTG
15216453 TCTAAGC
130 TCTAAGC
15216460 CCCAGCCGAA
Statistics
Matches: 267, Mismatches: 48, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
183 1 0.00
184 87 0.33
185 23 0.09
188 1 0.00
189 2 0.01
191 1 0.00
192 1 0.00
194 2 0.01
196 6 0.02
197 72 0.27
198 71 0.27
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (198 bp):
AGCAAGATCGATAGCACGCAGCGAGGGATCGAGCCGATCACCGGCTTGCGCATTCTGCCTCTCCG
ACCGACTAAGCACCCACACGCTCGATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGT
CTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGTAGTAGGACC
AGT
Found at i:15216562 original size:159 final size:159
Alignment explanation
Indices: 15216310--15216776 Score: 496
Period size: 159 Copynumber: 2.9 Consensus size: 159
15216300 GATCGGTCTG
** * * *
15216310 GACCGAGGGTTGCGACAGCAGGATTGGTAGCACGCAGGGGGGACAGGGCCGATCCCCGGTTTGCG
1 GACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGGGGGGACAGGGCTGATCCCCGGCTTGCG
* * * *
15216375 CATTTTGCCTC-TCCGACCGGCTAAGCACCCACATGCCCGTTTCATGGGTTGGCTTAGGCATACG
66 CATTATGCCTCTTCAGACCGGCTAAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
15216439 GAGTTCATTCCATGTCTAAGCCCCAGCC-
131 GAGTTCATTCCATGTCTAAGCCCCAACCA
* * * * * *
15216467 GAACCGAGGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGGGGACTGGGCTAATCCCCGGCTTG
1 G-ACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAG-GGGGGACAGGGCTGATCCCCGGCTTG
* * * *
15216532 CGCATTATGCCTCTTCAG-CCGGCTCAGCACCTGCATGCTCGTTTCATGGGTTGACTTATGCATA
64 CGCATTATGCCTCTTCAGACCGGCTAAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATA
****
15216596 CGGAGTTCATTCCCA-GTCTAAGATTGAACCA
129 CGGAGTTCATT-CCATGTCTAAGCCCCAACCA
* * * * * *
15216627 GACTGAGGGTTACGGTAGCAGGATTGACAGCACGTAGGGGAGACCGGG-TCGATCCCCGGCTTGC
1 GACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGGGGGGACAGGGCT-GATCCCCGGCTTGC
* * * * * * * * *
15216691 GTATTCTGCCT-TTCTGACAGGCTGAGCGCCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATAC
65 GCATTATGCCTCTTCAGACCGGCTAAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
15216755 GGTGTTCATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
15216777 ATATGGAGTT
Statistics
Matches: 253, Mismatches: 49, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 9 0.04
158 114 0.45
159 123 0.49
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGGGGGGACAGGGCTGATCCCCGGCTTGCG
CATTATGCCTCTTCAGACCGGCTAAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAACCA
Found at i:15216765 original size:158 final size:156
Alignment explanation
Indices: 15216282--15216775 Score: 490
Period size: 158 Copynumber: 3.1 Consensus size: 156
15216272 AAGCATATGA
** * ** *
15216282 AGTTCATTCCCA-GTCTAAGATCGGTCTGGACCGAGGGTTGCGACAGCAGGATTGGTAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCGAAC-CGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCA
* * * * *
15216346 GGGGGGACAGGGCCGATCCCCGGTTTGCGCATTTTGCCTCTCCGACCGGCTAAGCACCCACATGC
64 GGGGGGACAGGG-CGATCCCCGGCTTGCGCATTATGCCTTTCAGACCGGCTAAGCACCCGCATGC
*
15216411 CCGTTTCATGGGTTGGCTTAGGCATACGG
128 TCGTTTCATGGGTTGGCTTAGGCATACGG
** * * * * * *
15216440 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGCGGGACTGGCAGCACACAG
1 AGTTCATTCCATGTCTAAGATCGAACCG-ACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAG
* * * *
15216505 AGGGGGACTGGGCTAATCCCCGGCTTGCGCATTATGCCTCTTCAG-CCGGCTCAGCACCTGCATG
65 -GGGGGACAGGGC-GATCCCCGGCTTGCGCATTATGCCT-TTCAGACCGGCTAAGCACCCGCATG
* *
15216569 CTCGTTTCATGGGTTGACTTATGCATACGG
127 CTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * * *
15216599 AGTTCATTCCCA-GTCTAAGATTGAACCAGACTGAGGGTTACGGTAGCAGGATTGACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCGAACC-GACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCA
* * * * * * * * *
15216663 GGGGAGACCGGGTCGATCCCCGGCTTGCGTATTCTGCCTTTCTGACAGGCTGAGCGCCCGCACGC
64 GGGGGGACAGGG-CGATCCCCGGCTTGCGCATTATGCCTTTCAGACCGGCTAAGCACCCGCATGC
* *
15216728 TCGTTTCGTGCGTTGGCTTAGGCATACGG
128 TCGTTTCATGGGTTGGCTTAGGCATACGG
*
15216757 TGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
15216776 CATATGGAGT
Statistics
Matches: 272, Mismatches: 54, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 11 0.04
158 132 0.49
159 122 0.45
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCGAACCGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGG
GGGGACAGGGCGATCCCCGGCTTGCGCATTATGCCTTTCAGACCGGCTAAGCACCCGCATGCTCG
TTTCATGGGTTGGCTTAGGCATACGG
Found at i:15216787 original size:26 final size:26
Alignment explanation
Indices: 15216749--15216801 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15216739 GTTGGCTTAG
*
15216749 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15216775 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15216801 G
1 G
15216802 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15217971 original size:26 final size:26
Alignment explanation
Indices: 15217942--15217994 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15217932 GTTAGCTTAG
*
15217942 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15217968 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15217994 G
1 G
15217995 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15218337 original size:171 final size:171
Alignment explanation
Indices: 15217968--15218338 Score: 379
Period size: 171 Copynumber: 2.2 Consensus size: 171
15217958 CCATGTCTAA
* *
15217968 GCATACAGAGTTCATTCCCAGTCTAAG-ATCAGATCAGACCAAGGGTTACGGTAGCAGGACCAGC
1 GCATACAGAGTTCA-TCCCAGTCTAAGCACCAGACCAGACCAAGGGTTACGGTAGCAGGACCAGC
* * * * **
15218032 AGTAGGATCAGCAGCACGTAAGGAGGGACCGGGCCGATCCCCGACATGCGCATTCTGCCTCTCTG
65 AGTAGGATCAACAGCACGTAAGGAGGGACCGGGCCGATCCCCGACATACGCATTATGCCTATCCA
* * *
15218097 GCCGGCTGAGCACCTGTACGCTCAATTCGTGGGTTGGCTTAG
130 GCCGGCTGAGCACCCGCACGCTCAATTCGTGGGTTGACTTAG
* * * * * ** * *
15218139 GCATACAAAGTTCATTCCATATCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCAGGACCGGT
1 GCATACAGAGTTCATCCCA-GTCTAAGCACCAGACCAGACCAAGGGTTACGGTAGCAGGACCAGC
* * ** * * *
15218203 AGTGGGATCAACAGCATGTAGAGG-GGGACCGGGTTGATCCTCGGCTTACGCATTATGCCTATCC
65 AGTAGGATCAACAGCACGTA-AGGAGGGACCGGGCCGATCCCCGACATACGCATTATGCCTATCC
* * ** *
15218267 AGCCGGGTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
129 AGCCGGCTGAGCACCCGCACGCTCAATTCGTGGGTTGACTTAG
**
15218310 GCATATGGAGTTCATCCCCAGTCTAAGCA
1 GCATACAGAGTTCAT-CCCAGTCTAAGCA
15218339 TACGGAGTTC
Statistics
Matches: 158, Mismatches: 38, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
170 4 0.03
171 145 0.92
172 9 0.06
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (171 bp):
GCATACAGAGTTCATCCCAGTCTAAGCACCAGACCAGACCAAGGGTTACGGTAGCAGGACCAGCA
GTAGGATCAACAGCACGTAAGGAGGGACCGGGCCGATCCCCGACATACGCATTATGCCTATCCAG
CCGGCTGAGCACCCGCACGCTCAATTCGTGGGTTGACTTAG
Found at i:15218346 original size:26 final size:26
Alignment explanation
Indices: 15218310--15218362 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15218300 GTTGACTTAG
* *
15218310 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15218336 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15218362 G
1 G
15218363 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15218842 original size:26 final size:26
Alignment explanation
Indices: 15218812--15218864 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15218802 GTTGTCTTAG
15218812 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
15218838 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15218864 G
1 G
15218865 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15219585 original size:26 final size:26
Alignment explanation
Indices: 15219548--15219600 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15219538 GTTAACTTAG
15219548 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15219574 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
15219600 G
1 G
15219601 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15219763 original size:26 final size:26
Alignment explanation
Indices: 15219733--15219785 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15219723 TTTGGCTTAG
*
15219733 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
15219759 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
15219785 G
1 G
15219786 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:15220425 original size:904 final size:912
Alignment explanation
Indices: 15218653--15220663 Score: 2996
Period size: 904 Copynumber: 2.2 Consensus size: 912
15218643 GTTGACTTAT
* * * **
15218653 GCATAC-AGAGTTCATTCCCAGTGTAAGATCGGA-TCAGATCAAGGGTTATGGTAGCAAGATCGA
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGTAGCAAGATCGA
* * * * * *
15218716 TAGCACGTAGGGGGGGACCGGGCCGATGCCCGGCTTGAGCATTCTGCCTCTCCGACCGGCTGAGC
64 CAGCACGCA-GAGGGGACCAGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
** * *
15218781 GCCTACACGCT-AGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACG
127 GCCCGCACGCTCA-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* *
15218845 GAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTGGTA
191 GAGTTCAATCCCAGTCTAAGATTTTGAGCCACAGTGCACATGCTGGGCTTGGGCATGTGCTGGTA
*
15218910 CCGCATATTTTTCACCCGGGGCACCATCGTCAGAGCATCGTCGGAGCATAGCCGGAGAGCCTAAC
256 CCGCATATTTTTCACCCGGGGCACCATCCTCAGAGCATCGTCGGAG-A-AGCC-----GCCTAAC
* * * *
15218975 CGATGACATTGTGGGTTCTGGCGATTGGGGGTGGGCGGGGGGTGTGCGCACATGATGTGCGATGG
314 CGATGACATTGGGGGTTCCGGCGATTGAGGGTGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
15219040 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
379 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
15219105 TTAAAGAGCATTTGAGATTGTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
444 TTAAAGAGCATTTGAGATTGTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
15219170 ACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAATTTTTAGCTGAATTTTTTTGAGCATG
509 ACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAAGTTTTAGCTGAATTTTTTTGAGCATG
15219235 CCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTA
574 CCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTA
* * *
15219300 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTTCCAC
639 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCCTGCCAC
* * *
15219365 GAAACTTCACTTGAAGGCTTAGGGGACGATTGCATGAATTTACAAACCATAAAAATGGCATTGGC
704 GAAACTTCACATGAAGGCCTAGGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGC
* *
15219430 ATGGCATAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCTGACTTGCGCATC
769 ATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCAGACTTGCGCATC
*
15219495 CTACCTCTCTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTT
834 CTACCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTT
15219560 CATCCCCAGTCTAA
899 CATCCCCAGTCTAA
* *
15219574 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCAAGATCGACA
*
15219639 GCACGCAGAGAGGGACCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
66 GCACGCAGAG-GGGACCAGGCCGATCC-CGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * *
15219704 CCGCACTCTCATTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* *
15219769 TTCAATCCTAGTCTAAGATTTTGAGCCACAGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCG
194 TTCAATCCCAGTCTAAGATTTTGAGCCACAGTGCACATGCTGGGCTTGGGCATGTGCTGGTACCG
* * * * *
15219834 TATTTTTTTCGCTCGGGGCACCATCACT-AGAGCATCGTCGGAG-AG-C-CC-AGCC-A-G-CAT
259 CATATTTTTCACCCGGGGCACCATC-CTCAGAGCATCGTCGGAGAAGCCGCCTAACCGATGACAT
* *
15219891 TGGGGGTTCCGGCGATT-AGGG-GGCCAGGGTGGTGTGCGCACATGATGTGGGATGGGTGCTGGT
323 TGGGGGTTCCGGCGATTGAGGGTGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
** *
15219954 ACTTGGCCCTTATATTGGTGCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
387 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
15220019 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTT
452 CATTTGAGATTGTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * * *
15220084 CAAAGGGTCACAAAATCTTCTCCACTTTG-AGTTTTAGCTGGATTTTTTTGTGCATGCCAACAAA
517 CAAACGATCACAAAATCTTCTCCACTTCGAAGTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAA
15220148 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTT-AAAAAATC
582 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAAATC
* *
15220212 TCGAGCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCCTGCCACGAAACTTC
647 TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCCTGCCACGAAACTTC
* * *
15220277 ACATGAAGGCCTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
712 ACATGAAGGCCTAGGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCATGGCAGA
* * *
15220342 AATATGAAGATGTGCTTGAACCCACCTACCATCCGTTCGATCCTCAG-CTTGCGCATCTTACCTC
777 AATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCC-CAGACTTGCGCATCCTACCTC
* *
15220406 TCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCT
841 TCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCC
15220471 AGTCTAA
906 AGTCTAA
* * * * *
15220478 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCAAGATCGACA
* * * *
15220543 GCACACAGAGGGGACCAGACCGATCGCCGGCTTGCGCATTCTCCCTC-TCTGACCGGCTGAGTG-
66 GCACGCAGAGGGGACCAGGCCGATC-CCGGCTTGCGCATTCTGCCTCTTC-GACCGGCTGAGCGC
* * *
15220606 CCGCCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CCG-CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15220664 CCTAGTCGAA
Statistics
Matches: 993, Mismatches: 86, Indels: 40
0.89 0.08 0.04
Matches are distributed among these distances:
902 5 0.01
903 92 0.09
904 320 0.32
905 92 0.09
906 189 0.19
907 18 0.02
908 1 0.00
909 1 0.00
910 3 0.00
911 2 0.00
917 1 0.00
918 2 0.00
920 4 0.00
921 259 0.26
922 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (912 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCAAGATCGACA
GCACGCAGAGGGGACCAGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
CAATCCCAGTCTAAGATTTTGAGCCACAGTGCACATGCTGGGCTTGGGCATGTGCTGGTACCGCA
TATTTTTCACCCGGGGCACCATCCTCAGAGCATCGTCGGAGAAGCCGCCTAACCGATGACATTGG
GGGTTCCGGCGATTGAGGGTGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTGTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
CGATCACAAAATCTTCTCCACTTCGAAGTTTTAGCTGAATTTTTTTGAGCATGCCAAAAAAAATA
CAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAAATCTCGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCCTGCCACGAAACTTCACAT
GAAGGCCTAGGGGACCATTGCATGAATTTACAAACCATAAAAATGGCATTGGCATGGCAGAAATA
TGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCAGACTTGCGCATCCTACCTCTCCGG
TCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCT
AA
Found at i:15220489 original size:26 final size:26
Alignment explanation
Indices: 15220452--15220504 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15220442 GTTGACTTAG
15220452 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15220478 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15220504 G
1 G
15220505 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15220982 original size:26 final size:26
Alignment explanation
Indices: 15220953--15221005 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15220943 GTTGGCTTAG
*
15220953 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15220979 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15221005 G
1 G
15221006 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15222167 original size:158 final size:159
Alignment explanation
Indices: 15221765--15222436 Score: 545
Period size: 159 Copynumber: 4.3 Consensus size: 159
15221755 CTGCTGCCGT
*
15221765 AACCCTCGATCTGGTCTGATCTT-AGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGATCTGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
15221829 CGAGCGTACGGGCGCTGAGCCGATCAGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCC
66 CGAGCGTGCGGGCGCTGAGCCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC
** * * *
15221894 CCTCTATGTGTTGTCGGTCCCGCTACCAC
131 CCTCTACATGCTGTCGATCCCACTACCAC
* * ** * * * * *
15221923 AACTCTCGGTCTGG-CTAGGGCTTAAACAT-GTAATGAACTCCCTATGCCGAAGCCAACCCATGA
1 AACCCTCGATCTGGTCT-GATCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
15221986 AACGGGTGTGCAGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGGT-
64 AACGAGCGTGCGGGCGCTGAGCCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTC
* * *
15222050 TCCCTCTACATGCTGTCGATCCTACTACTAC
129 CCCCTCTACATGCTGTCGATCCCACTACCAC
** *
15222081 AACCCTCGATCTGGTCTGATCTTAAACTGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAA
1 AACCCTCGATCTGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * ** * * *
15222146 TGAGCGTGCGGGCGGTGAGCCGGTC-GAAGAAGCATAATGCATAAGCCAGGGATCGGCCCGATCC
66 CGAGCGTGCGGGCGCTGAGCCGATCAG-AGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCC
* * * ** *
15222210 CCCTCTACGTGCTGTTGGTCCCGTTGCCAC
130 CCCTCTACATGCTGTCGATCCCACTACCAC
* * * ** * * *
15222240 AACCCTCGGTC-CGACTGGGGCTTAAACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 AACCCTCGATCTGGTCT-GATCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * ** * * * * *
15222303 AAC-AGGCGTACGGGTGCTCAGCCGGCCAAAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGAT
64 AACGA-GCGTGCGGGCGCTGAGCCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT
** * * * **
15222367 -CTAC-CTGCGTGCTGTCGATCCTACTACCGT
128 CCCCCTCTACATGCTGTCGATCCCACTACCAC
* * * * *
15222397 AACCCTCGGTCCGGCCCGATCTTAGACTGGGAATGAACTC
1 AACCCTCGATCTGGTCTGATCTTAAACTGGGAATGAACTC
15222437 TATATGCTTA
Statistics
Matches: 397, Mismatches: 104, Indels: 27
0.75 0.20 0.05
Matches are distributed among these distances:
156 1 0.00
157 50 0.13
158 140 0.35
159 204 0.51
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
AACCCTCGATCTGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTGAGCCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC
CCTCTACATGCTGTCGATCCCACTACCAC
Found at i:15222277 original size:159 final size:158
Alignment explanation
Indices: 15221793--15222364 Score: 549
Period size: 159 Copynumber: 3.6 Consensus size: 158
15221783 ATCTTAGCTG
*
15221793 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCAGAG
* * *
15221858 AGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTATGTGTTGTCGGTCCCGCTACCAC
66 AGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACCAC
* * *
15221923 AACTCTCGGTCTGGCTAGGGCTTAAACAT
131 AACCCTCGGTCCGACT-GGGCTTAAACAT
* * * * * * * * *
15221952 GTAATGAACTCCCTATGCCGAAGCCAACCCATGAAACGGGTGTGCAGGCGCTCAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCAGAG
* * * * * ** *
15222017 AGGCAGAATGCGCAAGTCGGGGATTGGCCCGGT-TCCCTCTACATGCTGTCGATCCTACTACTAC
66 AGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACCAC
* * * **
15222081 AACCCTCGATCTGGTCTGATCTTAAAC-T
131 AACCCTCGGTC-CGACTGGGCTTAAACAT
** * * * *
15222109 GGGAATGAACTTTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGGTGAGCCGGTC-GA
1 -GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCAG-
* ** * * * * * *
15222173 AGAAGCATAATGCATAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTTGGTCCCGTTGCC
64 AGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACC
15222238 ACAACCCTCGGTCCGACTGGGGCTTAAACAT
129 ACAACCCTCGGTCCGACT-GGGCTTAAACAT
* * * * * * ** *
15222269 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTACGGGTGCTCAGCCGGCCAAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTGAGCCGATCAGA
* * * *
15222333 GAGGTAGAATGCGCAAGCCGGGGATCAGCCCG
65 GAGGCATAATGCGCAAGTCGGGGATCGGCCCG
15222365 ATCTACCTGC
Statistics
Matches: 321, Mismatches: 84, Indels: 16
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 117 0.36
159 201 0.63
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCAGAG
AGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACCAC
AACCCTCGGTCCGACTGGGCTTAAACAT
Found at i:15222584 original size:12 final size:12
Alignment explanation
Indices: 15222567--15222591 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15222557 TGCATGATGT
15222567 CGATCCTGCTGC
1 CGATCCTGCTGC
15222579 CGATCCTGCTGC
1 CGATCCTGCTGC
15222591 C
1 C
15222592 ACAACCCTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.44, G:0.24, T:0.24
Consensus pattern (12 bp):
CGATCCTGCTGC
Found at i:15223165 original size:159 final size:156
Alignment explanation
Indices: 15222812--15223563 Score: 531
Period size: 159 Copynumber: 4.8 Consensus size: 156
15222802 TCCGTATGCG
* * *
15222812 TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGTGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-
* * * * * **
15222877 GTCGAAAAGACAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCCAC
65 GACGGAAAGGCAGAATGCACAAGCCGGGGATCG-GCTGGTCCCCCCTGCGTGCTGTCGATCCCAC
** * * * * *
15222942 TATCGTAACCCTCAGTCTAGTCTGATCT
129 TGCCGAAAACCTCGGTCTAGGCTGAGCT
* * * * *
15222970 TAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* *
15223034 GACGGGAAAGGCATAATGCACAA-CTCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGATCT
65 GAC-GGAAAGGCAGAATGCACAAGC-CGGGGATCGG-CTGGTCCCCC-CTGCGTGCTGTCGATCC
* *
15223098 CACTGCCAAAAACCTCGGTCT-GGCTAGGGCT
126 CACTGCCGAAAACCTCGGTCTAGGCT-GAGCT
* * * *
15223129 TAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCAGGCGCTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCC
* * * * *
15223193 AATC-GAAGAGGTAGAATG-AGTAAGTCGGGGATCGGTCTGG--CCCCCTGTGTGCTGTCGATCC
65 GA-CGGAA-AGGCAGAATGCA-CAAGCCGGGGATCGG-CTGGTCCCCCCTGCGTGCTGTCGATCC
** * * * * *
15223254 TGCTGCTGCAACCCTCGGTC-CGGTCTGATCT
126 CACTGCCGAAAACCTCGGTCTAGG-CTGAGCT
** * * * * * * * *
15223285 TAGAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCACAAAATGAGTGTACGGGTGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** * * * *
15223349 GACGGAAGAGGCATAATGCGGAAGCCAGGGATCGGCTCGGTCCACCTCTGCTTGCTG-CCAGTCC
65 GACGGAA-AGGCAGAATGCACAAGCCGGGGATCGGCT-GGTCC-CCCCTGCGTGCTGTCGA-TCC
* * * * * *
15223413 CGCAGCC-ACAACACTCGGT-TCGACTGGGGCT
126 CACTGCCGAAAAC-CTCGGTCTAGGCT-GAGCT
* * * * * * * *
15223444 TAGAGATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGCATGCGGGCACTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* *
15223509 ACAGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCAGTCCCCCCTGCGTGCTG
66 AC-GGAAAGGCAGAATGCACAAGCCGGGGATCGGCT-GGTCCCCCCTGCGTGCTG
15223564 CAGATCCTGT
Statistics
Matches: 462, Mismatches: 104, Indels: 56
0.74 0.17 0.09
Matches are distributed among these distances:
155 4 0.01
156 107 0.23
157 11 0.02
158 113 0.24
159 221 0.48
160 6 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACGGAAAGGCAGAATGCACAAGCCGGGGATCGGCTGGTCCCCCCTGCGTGCTGTCGATCCCACTG
CCGAAAACCTCGGTCTAGGCTGAGCT
Found at i:15223399 original size:315 final size:315
Alignment explanation
Indices: 15222812--15223626 Score: 878
Period size: 315 Copynumber: 2.6 Consensus size: 315
15222802 TCCGTATGCG
* * * *
15222812 TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGTGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTCAGCCG
* * * * ** **
15222877 GTCGAAAAGACAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCCAC
65 ATCGAAGAGGCAGAATGAGCAAGCCGGGGATCG-GTCAGTCCCCCCTGCGTGCTGTCGATCCTGC
* * * ** * *
15222942 T-ATCGTAACCCTCAGTCTAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACC
129 TGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACC
** *
15223006 CATGAAACGAGCGTACGGGCGCTGAGCCGACGGGAAAGGCATAATGCACAACTCGGGGATCGGCC
193 CACAAAACGAGCGTACGGGCGCTGAGCCGACGGGAAAGGCATAATGCACAACTCAGGGATCGGCC
* * * * *
15223071 TGGTCCCCCTCTGCGTGCTGTC-GATCTCACTGCCAAAA-ACCTCGG-TCTGGCTAGGGCT
258 TGGTCCACCTCTGCGTGCTGCCAG-TCCCACAGCCAAAACA-CTCGGTTC-GACTAGGGCT
* * * *
15223129 TAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGCGCTCAGCCA
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAGCCG
* * * * * *
15223194 ATCGAAGAGGTAGAATGAGTAAGTCGGGGATCGGTCTG-GCCCCCTGTGTGCTGTCGATCCTGCT
65 ATCGAAGAGGCAGAATGAGCAAGCCGGGGATCGGTCAGTCCCCCCTGCGTGCTGTCGATCCTGCT
*
15223258 GCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCATAAGTCAACCCA
130 GCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCA
* * * **
15223323 CAAAATGAGTGTACGGGTGCTGAGCCGAC-GGAAGAGGCATAATGCGGAAGC-CAGGGATCGG-C
195 CAAAACGAGCGTACGGGCGCTGAGCCGACGGGAA-AGGCATAATGCACAA-CTCAGGGATCGGCC
* * * *
15223385 TCGGTCCACCTCTGCTTGCTGCCAGTCCCGCAGCCACAACACTCGGTTCGACTGGGGCT
258 T-GGTCCACCTCTGCGTGCTGCCAGTCCCACAGCCAAAACACTCGGTTCGACTAGGGCT
* * * * * *
15223444 TAGAGATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGCATGCGGGCACTCAACCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CGGCGTGCGGGCGCTCAGCCG
*
15223509 A-CAGGAGAGGCAGAATGCA-CAAGCCGGGGATCGGCTCAGTCCCCCCTGCGTGCTG-CAGATCC
65 ATC-GAAGAGGCAGAATG-AGCAAGCCGGGGATCGG-TCAGTCCCCCCTGCGTGCTGTC-GATCC
* ** * * *
15223571 TGTTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCTATATGC
126 TGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
15223627 TTAGACTGGG
Statistics
Matches: 414, Mismatches: 70, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
314 7 0.02
315 244 0.59
316 13 0.03
317 149 0.36
318 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (315 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAGCCGA
TCGAAGAGGCAGAATGAGCAAGCCGGGGATCGGTCAGTCCCCCCTGCGTGCTGTCGATCCTGCTG
CTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCAC
AAAACGAGCGTACGGGCGCTGAGCCGACGGGAAAGGCATAATGCACAACTCAGGGATCGGCCTGG
TCCACCTCTGCGTGCTGCCAGTCCCACAGCCAAAACACTCGGTTCGACTAGGGCT
Found at i:15223636 original size:26 final size:26
Alignment explanation
Indices: 15223600--15223652 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15223590 CCGGTCCGAT
* *
15223600 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15223626 CTTAGACTGGGGATGAGCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15223652 C
1 C
15223653 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15224465 original size:26 final size:26
Alignment explanation
Indices: 15224427--15224481 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
15224417 CCCCCATGTG
15224427 TGCTTAGACTGGGAAAGAACTCTGTA
1 TGCTTAGACTGGGAAAGAACTCTGTA
* * *
15224453 TGCTTAGATTGGGGATGAACTCTGTA
1 TGCTTAGACTGGGAAAGAACTCTGTA
15224479 TGC
1 TGC
15224482 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TGCTTAGACTGGGAAAGAACTCTGTA
Found at i:15225228 original size:841 final size:829
Alignment explanation
Indices: 15223600--15225262 Score: 2000
Period size: 841 Copynumber: 2.0 Consensus size: 829
15223590 CCGGTCCGAT
* * *
15223600 CTTAGATTGGGAATGAACTCTATATGCTTAGACTGGGGATGAGCTCCATATGCCTAAGTCAACTC
1 CTTAGACTGGGAAAGAACTCTATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTC
* * * *
15223665 ATGAAATGAGCGTGCAGACGCTCAACCGATCGGAGAGGCTGGCTGGAAAGGCATAATGCGTAAGT
66 ATGAAATGAGCGTGCAGACACTCAACCGATCGGAGAGGCCGGCTGGAAAGGCATAATGCGCAAGC
* * * * * * *
15223730 CAGAGATCAGCCTGGTCCTCCTATGCGTGCTGCTGATCCTACTATCGGTCCTGCTACCACAACCC
131 CAGAGATCAGCCAGGCCCTCCTATGCGTGCTCCTGATCCCACTACCGATCCTGCTACAACAACCC
* * * *
15223795 TCTGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGC
196 TCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* * *
15223860 GTGCGGGCACTCAACAGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCAGTCTGATCCCCCTGT
261 GTGCGGGCACTCAACAGACCAGAGAGGCAGAATGCGCAAGACGAGGATCAGCCTGATCCCCCTGC
* * *
15223925 ATGCTATCGATCCTGCTGCCGTAGCCCTCGATCTGGTCTGATCTTATATTAGGAATGAACTCCGT
326 ATGCTATCGATCCTGCTGCCCTAGCCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGT
** * *
15223990 ATGCGTAGACATGAAATGGACTCCATATGCCTAAGCCGACCCAGGAAACGAGCGTGCGGGCGTTC
391 ATGCGTAGACATGAAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTC
** * **
15224055 AGCCGGTCGGAGTGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGAT
456 AGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGAT
15224120 CCTACTACCGTAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
521 CCTACTACCGTAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
15224185 AACCCACGAAACGAATGTGTGGGCACTGAGCCGATGGGAGAGGCATAATGCACAAGTCGAGGATC
586 AACCCACGAAACGAACGTGCGGGCACTGAGCCAATCGAAAAGGCATAATGCACAAGCCGAGGATC
15224250 AGCCTGGTCCCCCTCTGCGTGCTACCAGTCCCGCTGCCAAAACCCTCGGTTCGGCTAGGGCTTAG
651 AGCCTGGTCCCCCTCTGCGTGCTACCAGTCCCGCTGCCAAAACCCTCGGTTCGGCTAGGGCTTAG
* * *
15224315 ACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCGCTTAGCCGACC
716 ACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACAGGCGCTCAACCGACC
* * * *
15224380 GGAGAGGCAGAATACGTAAGTCAAGGATCGACCCGGTCCCCCATGTGTG
781 AGAGAGGCAGAATACGCAAGCCAAGGATCGACCCAGTCCCCCATGTGTG
* * **
15224429 CTTAGACTGGGAAAGAACTCTGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACTC
1 CTTAGACTGGGAAAGAACTCTATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTC
* * * * *
15224494 ATGAAATGAGCGTGC-GAGCACTCAATCGGTCGGAGAGGCC-GATCGGAGAGGCATAATGTGCAA
66 ATGAAATGAGCGTGCAGA-CACTCAACCGATCGGAGAGGCCGGCT-GGAAAGGCATAATGCGCAA
* * * * *
15224557 GCCGGGGATCAGCCCAGGCCCT-CTCTGCGTGCTACCT-ATCCCGCTGCCGATCCTGCTACAACA
129 GCCAGAGATCAG-CCAGGCCCTCCTATGCGTGCT-CCTGATCCCACTACCGATCCTGCTACAACA
*
15224620 ACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAAC-CCAGTATGCCTAAGCCAACCCATGAAA
192 ACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAA
* * * * *** * *
15224684 CGAGTGTGTGGGCACTCAGCCGGTTAGAGAGGCAGAATGCGTAAGACGGGGATC-GACCT-AGTC
256 CGAGCGTGCGGGCACTCAACAGACCAGAGAGGCAGAATGCGCAAGACGAGGATCAG-CCTGA-T-
* * *
15224747 CCCCCTGCGTGCTGTCGATCCTATTGCTGGTCCTACTATCGCAACCCTTGATCTGGTCTGATCTT
318 CCCCCTGCATGCTATCGATCC---TGCT-G-CC--CTA--G---CCCTCGATCTGGTCTGATCTT
* * * * *
15224812 AGACTGGGAATGAACTTCGTATGC-TTGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACG
371 AGACTAGGAATGAACTCCGTATGCGTAGACATGAAATAAACTCCATATGCCTAAGCCAACCCACG
* ** * * *
15224876 AAACGAGCGTGCGGGCGTTCAGTCGACCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGGT
436 AAACGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGT
* * * * * * *
15224941 CCCTCCTGCGTGCTGTCGATCCTTCTATCGTAACCCTCGATTTGGTTTGATCTTAGACTGGGAAT
501 CCCCCCTACGTGCTGTCGATCCTACTACCGTAACCCTCGATCTGGTCTGATCTTAGACTAGGAAT
* * **
15225006 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCAATCGAAAAGGCA
566 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTGAGCCAATCGAAAAGGCA
** * * * * *** *
15225071 TAATGCGTAAGCCGGGGAT-TGACCTGGTCTCCCTCTGTGTGCT-GTTGATCCCGCTGCCATAAC
631 TAATGCACAAGCCGAGGATCAG-CCTGGTCCCCCTCTGCGTGCTACCAG-TCCCGCTGCCAAAAC
* *
15225134 CCTCGGTTCGGC-AGGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAAC-
694 CCTCGGTTCGGCTA-GGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * * * **
15225197 GAGCGTACGGGCGCTCAACCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCC
758 GA-CGTACAGGCGCTCAACCGACCAGAGAGGCAGAATACGCAAGCCAAGGATCGACCCAGTCCCC
15225262 C
822 C
15225263 TGCATGCTAC
Statistics
Matches: 696, Mismatches: 114, Indels: 36
0.82 0.13 0.04
Matches are distributed among these distances:
828 7 0.01
829 250 0.36
830 27 0.04
833 4 0.01
834 1 0.00
835 2 0.00
837 2 0.00
839 1 0.00
840 5 0.01
841 357 0.51
842 40 0.06
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (829 bp):
CTTAGACTGGGAAAGAACTCTATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTC
ATGAAATGAGCGTGCAGACACTCAACCGATCGGAGAGGCCGGCTGGAAAGGCATAATGCGCAAGC
CAGAGATCAGCCAGGCCCTCCTATGCGTGCTCCTGATCCCACTACCGATCCTGCTACAACAACCC
TCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
GTGCGGGCACTCAACAGACCAGAGAGGCAGAATGCGCAAGACGAGGATCAGCCTGATCCCCCTGC
ATGCTATCGATCCTGCTGCCCTAGCCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGT
ATGCGTAGACATGAAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTC
AGCCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGAT
CCTACTACCGTAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAACGTGCGGGCACTGAGCCAATCGAAAAGGCATAATGCACAAGCCGAGGATC
AGCCTGGTCCCCCTCTGCGTGCTACCAGTCCCGCTGCCAAAACCCTCGGTTCGGCTAGGGCTTAG
ACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACAGGCGCTCAACCGACC
AGAGAGGCAGAATACGCAAGCCAAGGATCGACCCAGTCCCCCATGTGTG
Found at i:15225242 original size:159 final size:158
Alignment explanation
Indices: 15224834--15225270 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 158
15224824 AACTTCGTAT
*
15224834 GCTT-GACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** *
15224898 TCGACCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCC
66 CCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCTGCGTGCTGTCGATCC
** * * * ***
15224963 TTCTATCGTAACCCTCGATTTGGTTTGA
131 CGCTACCATAACCCTCGATTCGGCAGGA
* * * * * *
15224991 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
15225055 GCC-AATCGAAAAGGCATAATGCGTAAGCCGGGGATTGACCTGGTCTCC-CTCTGTGTGCTGTTG
65 GCCGACTAG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC-CCTC-CTGCGTGCTGTCG
* * *
15225118 ATCCCGCTGCCATAACCCTCGGTTCGGCAGGG
127 ATCCCGCTACCATAACCCTCGATTCGGCAGGA
* * * *
15225150 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
15225215 CCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCC-CCTGCATGCT
66 CCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCTGCGTGCT
15225271 ACCGATCCTG
Statistics
Matches: 220, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 13 0.06
158 84 0.38
159 120 0.55
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACTAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCTCCTGCGTGCTGTCGATCC
CGCTACCATAACCCTCGATTCGGCAGGA
Found at i:15225337 original size:26 final size:26
Alignment explanation
Indices: 15225308--15225360 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15225298 CCGGTCCGAT
* *
15225308 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
15225334 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
15225360 C
1 C
15225361 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15226056 original size:26 final size:26
Alignment explanation
Indices: 15226018--15226070 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226008 GGCTCAAAAT
15226018 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCTGTATG
*
15226044 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAAATCTGTATG
15226070 C
1 C
15226071 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCTGTATG
Found at i:15226390 original size:26 final size:26
Alignment explanation
Indices: 15226361--15226413 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226351 CCGGTCTGAT
15226361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15226387 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15226413 C
1 C
15226414 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15226644 original size:342 final size:344
Alignment explanation
Indices: 15226016--15226667 Score: 877
Period size: 342 Copynumber: 1.9 Consensus size: 344
15226006 GTGGCTCAAA
* *
15226016 ATCTTAGACTGGGAATGAAATCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAA
1 ATCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
** * *
15226081 CCACGAAACTAGCATGCGGGCGCTCAGTCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGAC
66 CCACGAAACTAGCATGCGGGCGCTCAGTCGGGAGGAGAGGCATAATGCGCAAGCCGAGGATCGAC
* * * * * *
15226146 CCAGTCCCCCTCTGTGTGCTGCCGGTCCTGCTGCCACAACCCGTTGTCCGACTGGGGCTTAGACA
131 CCAATCCCCCTATGCGTGCTGCCGGACCCGCTGCCACAACCCGTGGTCCGACTGGGGCTTAGACA
* * * * *
15226211 TGGAATGAACTACCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGTGCTTAGCCGGCCGGA
196 TGGAATGAACTACCTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTAAGCCGGCCGGA
*
15226276 GAGGCAGAATGAGCAAGCCAGGGATCGGCTCGGTCCCCC-CTGCTTGCTGTCGATCCTACTGCCG
261 GAGGCAGAATGAGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCG
15226340 CAACCCTCGATCCGGTCTG
326 CAACCCTCGATCCGGTCTG
* * *
15226359 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAAATCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * *
15226423 CCCACGAAA-TGAGCGTGCGGGCGCTGAG-CGGGAGGAGAGGCATAATGCGCAAGCCTAGGATCG
65 ACCACGAAACT-AGCATGCGGGCGCTCAGTCGGGAGGAGAGGCATAATGCGCAAGCCGAGGATCG
* * * *
15226486 GCCTAATCCTCTTATGCGTGCTGCCGGACCCGCTGCCACAACCC-TCGGTCCGACTGGGGCTTAG
129 ACCCAATCCCCCTATGCGTGCTGCCGGACCCGCTGCCACAACCCGT-GGTCCGACTGGGGCTTAG
* * * *
15226550 AC-TGGGAATGAACT-CCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCGCTAAGCCGG
193 ACAT-GGAATGAACTACC-TATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTAAGCCGG
* * * *
15226613 CCTGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTG
256 CCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTG
15226668 CCGGTCCCGC
Statistics
Matches: 266, Mismatches: 37, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
341 4 0.02
342 173 0.65
343 89 0.33
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (344 bp):
ATCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
CCACGAAACTAGCATGCGGGCGCTCAGTCGGGAGGAGAGGCATAATGCGCAAGCCGAGGATCGAC
CCAATCCCCCTATGCGTGCTGCCGGACCCGCTGCCACAACCCGTGGTCCGACTGGGGCTTAGACA
TGGAATGAACTACCTATGCATAAGCCAACCCACGAAACGAGCATACGGGCGCTAAGCCGGCCGGA
GAGGCAGAATGAGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCG
CAACCCTCGATCCGGTCTG
Found at i:15226677 original size:159 final size:157
Alignment explanation
Indices: 15226386--15226887 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 157
15226376 AACTCCGTAT
* * *
15226386 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
** * * * * * *
15226451 -CGGGAGGAGAGGCATAATGCGCAAGCCTAGGATCGGCCTAATCCTCTTATGCGTGCTGCCGGAC
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCC-GATCCCCCTCTGCGTGCTGCCGGTC
15226515 CCGCTGCCACAACCCTCGGTCCGACTGGG
130 CCGCTGCCACAACCCTCGGTCCGA-TGGG
* * **
15226544 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCGCTAAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * *
15226609 CCGGCCTGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTC
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGC-CGATCCCCCTCTGCGTGCTGCCGGTC
** * *
15226674 CCGCTGCCATGACCCTCAGTCCGGTTGGG
130 CCGCTGCCACAACCCTCGGTCC-GATGGG
* * * * *
15226703 GTTTAGACAT-GGAATG-ACTGCC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCTCTC
1 GCTTAGAC-TGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTA
* * * * * *
15226765 AGCCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTACCGA
64 AGCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCG-GCCGATCCCCCTCTGCGTGCTGCCGG
** ** * * *
15226829 TCCTACTATCACAACCCTCGATCCGATCCGA
128 TCCCGCTGCCACAACCCTCGGTCCGAT-GGG
* * *
15226860 TCTTAGGCTGCGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
15226888 TTAGATTGGG
Statistics
Matches: 279, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 41 0.15
158 142 0.51
159 90 0.32
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCGATCCCCCTCTGCGTGCTGCCGGTCC
CGCTGCCACAACCCTCGGTCCGATGGG
Found at i:15226813 original size:158 final size:159
Alignment explanation
Indices: 15226386--15226823 Score: 517
Period size: 158 Copynumber: 2.8 Consensus size: 159
15226376 AACTCCGTAT
* * *
15226386 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
** * ** * * *
15226451 -CGGGAGGAGAGGCATAATGCGCAAGCCTAGGATCGGCCTAATCCTCTTATGCGTGCTGCCGGAC
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGAC
*
15226515 CCGCTGCCACAACCCTCGGTCCGACTGGG
131 CCGCTGCCACAACCCTCAGTCCGACTGGG
* * **
15226544 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCGCTAAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * *
15226609 CCGGCCTGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTC
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGAC
** **
15226674 CCGCTGCCATGACCCTCAGTCCGGTTGGG
131 CCGCTGCCACAACCCTCAGTCCGACTGGG
* * * * *
15226703 GTTTAGACAT-GGAATG-ACTGCC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCTCTC
1 GCTTAGAC-TGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTA
* * * *
15226765 AGCCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCT
64 AGCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCT
15226824 ACCGATCCTA
Statistics
Matches: 235, Mismatches: 42, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
157 9 0.04
158 135 0.57
159 90 0.38
160 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGAC
CCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:15226890 original size:26 final size:26
Alignment explanation
Indices: 15226861--15226913 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226851 CCGATCCGAT
*
15226861 CTTAGGCTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* * *
15226887 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
15226913 C
1 C
15226914 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:15228097 original size:158 final size:159
Alignment explanation
Indices: 15227666--15228099 Score: 468
Period size: 158 Copynumber: 2.7 Consensus size: 159
15227656 TAGTCGGCCA
* * * *
15227666 GAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTGTGTGCTATCGATCCTGCTGC
1 GAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCCTCTGTGTGCTACCGATCCTGCTAC
* * *
15227731 CGCAACCCT-TGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAAC
66 CGCAACCCTCTG-TCCGGTCTAATCTTAGACTGGGAATGAACCCCGTATGCTTAAGCCAACCAAC
* * * * *
15227795 AAAATGAGCGTGCGGGCGCTGAGCCGACTG
130 AAAACGAGCATGCGGGCGCTCAGCCAACCG
* * *** **
15227825 AAGAGGCATAATACGTAAGTCGGGGATCGGCCTGATCCCCCTCTGTGTGCT-GTTATCCCACTAC
1 GAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCCTCTGTGTGCTACCGATCCTGCTAC
* * * *
15227889 CACAACCCTCGGTCAGG-CT-GTGGCTTAGACAT-GGAATGAACTCCC-TATGCTTAAGCCAACC
66 CGCAACCCTCTGTCCGGTCTAAT--CTTAGAC-TGGGAATGAAC-CCCGTATGCTTAAGCCAACC
* ** *
15227950 CATGAAACGGGCATGCGGGCGCTCAGCCAACCG
127 AACAAAACGAGCATGCGGGCGCTCAGCCAACCG
* * * * *
15227983 GAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGAT-CCCCTCTGCGTGCTACCGATCCTGCTAC
1 GAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCCTCTGTGTGCTACCGATCCTGCTAC
* *
15228047 TGTAACCCTCTGTCCGGTCTAATCTTAGACTGGGAATGAACCCCGTATGCTTA
66 CGCAACCCTCTGTCCGGTCTAATCTTAGACTGGGAATGAACCCCGTATGCTTA
15228100 GACTGGGGAT
Statistics
Matches: 221, Mismatches: 44, Indels: 21
0.77 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 19 0.09
158 147 0.67
159 53 0.24
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
GAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCCTCTGTGTGCTACCGATCCTGCTAC
CGCAACCCTCTGTCCGGTCTAATCTTAGACTGGGAATGAACCCCGTATGCTTAAGCCAACCAACA
AAACGAGCATGCGGGCGCTCAGCCAACCG
Found at i:15228106 original size:26 final size:26
Alignment explanation
Indices: 15228070--15228122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15228060 CCGGTCTAAT
15228070 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* **
15228096 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
15228122 C
1 C
15228123 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:15228635 original size:158 final size:158
Alignment explanation
Indices: 15228281--15228941 Score: 602
Period size: 159 Copynumber: 4.2 Consensus size: 158
15228271 TCGGCTGGGG
* * * *
15228281 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCCTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
15228345 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCCCTGCGTGCTGCCAATC
65 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC-CCCCCTGCGTGCTACCGATC
* * **
15228410 CTGCTGCGGCAATCCTCCATCCGGTC-CGAT
129 CTGCTGCGACAACCCTCGGTCCGGTCTC-AT
* * * * * *
15228440 CTTAAATTGGGAATGAACTTCGTATGCCCAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
15228505 CGG-TCGGAGAGGTAGAATACGCAAGTCAGGGACCGACCCGATCCCCCCTGTGTGCTATCGATCC
66 CGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
*
15228569 TGCTGTCG-CAACCCTCGGTCCAGTCTCAT
130 TGCTG-CGACAACCCTCGGTCCGGTCTCAT
* * * * * * * *
15228598 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAATGAGCGTGTGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * * * * *
15228663 CGACCGAAGAGCCATAATGCGCAAGTTGGGGATCGGCCC-AGTCCCCCTTTACGTGCTGTCGGA-
66 CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCC-CTGCGTGCT-ACCGAT
** * * *
15228726 CCCACTACCACAACCCTCGGTCCGG-CT-AGGG
128 CCTGCTGCGACAACCCTCGGTCCGGTCTCA--T
* * * *
15228757 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15228821 CCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCTACTCGATCCCACCTGCGTGCTACCGATCC
65 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
* * *
15228886 TGCTGCTACAACCCTCTGTCCGGTCTGAT
130 TGCTGCGACAACCCTCGGTCCGGTCTCAT
*
15228915 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15228942 TTAGACTGGG
Statistics
Matches: 392, Mismatches: 93, Indels: 35
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 178 0.45
159 203 0.52
160 5 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCT
GCTGCGACAACCCTCGGTCCGGTCTCAT
Found at i:15228944 original size:26 final size:26
Alignment explanation
Indices: 15228915--15228967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15228905 CCGGTCTGAT
*
15228915 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15228941 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15228967 C
1 C
15228968 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15229365 original size:169 final size:157
Alignment explanation
Indices: 15229134--15229709 Score: 464
Period size: 158 Copynumber: 3.6 Consensus size: 157
15229124 GCTTAGACAT
* * * *
15229134 GGAATGAACTCCGTAT-CCTGAGCCATCCCATGAAATGAGCCTGCGGGTGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG-CGACCGGAG
* *
15229198 AGGCAGAATGCGCAAGCCGGGGATCGGCTCG-GCCCCCCTACGTGCTGCCAATCCTGCTGCTGGT
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGAGCCCCCCTACGTGCTG----T-C-GAT-C----
* *
15229262 CTTGCTGCCGCAACCTTCGGTCCGACCCGATCTTAAACTG
119 C-TGCTGCCGCAACCCTCGATCCGACCCGATCTTAAACTG
*
15229302 GGAATGAACTCCGTATGCCCAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG-CGACCGGAG
* * * * * *
15229367 AGGTAGAATGCGCAAGTCGGGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGAGCCCCCCTACGTGCTGTCGATCCTGCTGCCGCA
* *
15229432 ACCCTCGATCCGATCCGATCTTAGACTG
130 ACCCTCGATCCGACCCGATCTTAAACTG
* * * * * * *
15229460 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCGA-CCGGAG
* * ** * * * * *
15229525 AGGCATAATGCGCAAGCCGGGGATCGACCC-AATCCCCCTCCGCATGCTGCCGGT-CTCACTACC
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGAGCCCCCCTACG--TGCTGTCGATCCT-GCTGCC
* * * * ** ** *
15229588 ACAACCCTTGATTCGGCTGGGGCTTAGACAT-
127 GCAACCCTCGATCCGACCCGATCTTAAAC-TG
* * * * * *
15229619 GGAATAAACTCCCTATGCCTAAGCCAACCC-TCAAAATG-GCCGTGCGGGTGCTAAGTCGATCGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAATGAG-CGTGCGGGCGCTCAG-CGACCGG
*
15229682 AGAGGCAAAATGCGCAAGCCGGGGATCG
63 AGAGGCAGAATGCGCAAGCCGGGGATCG
15229710 ACCTGGTCTC
Statistics
Matches: 339, Mismatches: 59, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
157 11 0.03
158 115 0.34
159 107 0.32
160 3 0.01
163 1 0.00
164 2 0.01
165 1 0.00
166 1 0.00
168 16 0.05
169 68 0.20
170 14 0.04
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCGACCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCGAGCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAA
CCCTCGATCCGACCCGATCTTAAACTG
Found at i:15229592 original size:853 final size:839
Alignment explanation
Indices: 15227630--15229745 Score: 2794
Period size: 853 Copynumber: 2.5 Consensus size: 839
15227620 TGAACTTCGT
* * * * * * *
15227630 ACCCACGAAACGAGTGTGCGGGCGCTTAGTCGGCCAGAGAGGCATAATGCGCAAGTCGGGGATCG
1 ACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGA-CC
* * * *
15227695 GCCTGATCCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTTGATCCGGTCTAATCTTAGA
65 GCCCGAT-CCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATC-CATCTTAGA
*
15227760 CTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAATGAGCGTGCGGGCGCTGAGCCGACTG
128 CTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAATGAGCGTGCGGGCACTGAGCCGAC-G
* * ** * ***
15227825 AAGAGGCATAATACGTAAGTCGGGGATCGGCCTGATCCCCCTCTGTGTGCTGTTATCCCACTACC
192 AAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGCGGTCCCACTACC
* * *
15227890 ACAACCCTCGGTCAGGCTGTGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATGA
257 ACAACCCTCGGTCCGGCTG-GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * *
15227955 AACGGGCATGCGGGCGCTCAGCCAACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATC
321 AACGGGCGTGCGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCGATC
* **
15228020 CC-CTCTGCGTGCTACCGATCCTGCTACTGTAACCCTCTGTCCGGTCTAATCTTAGACTGGGAAT
385 CCAC-CTGCGTGCTACCGATCCTGCTGCTACAACCCTCTGTCCGGTCTAATCTTAGACTGGGAAT
* *
15228084 GAACCCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAGAACGAGCGTA
449 GAACCCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAGAACAAGCGTA
* ** * * * * *
15228149 TGGGCACTCAACCAGCCAGGAGAGGTCGGTCGAAAAGGTATAATACGCAAGCTGGGGATTAGCCC
514 CGGGCACTCAACCAGCCAGGAGAGACCGATCGAAAAGGCATAATACGCAAGCCGAGGATCAGCCC
* * * *
15228214 GATCCTCCTTTGCGTGCTGCCGATCCCGCTGCCAGTCTTGCTGCCACAACCCTCAGTTCGGCTGG
579 GATCCTCCTTTGCGTGCTGCCGATCCCGCTGCCAGTCCTACTGCCACAACCCTCAGTCCGACTGG
15228279 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCCTACGGGCGCTCA
644 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCCTACGGGCGCTCA
* * * *
15228344 GCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCCCTGCGTGCTGCCAAT
709 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAGCACCCCCTACGTGCTGCCAAT
* *
15228409 CCTGCTGCGGCAATCCTCCATCCGGTCCGATCTTAAATTGGGAATGAACTTCGTATGCCCAAGCC
774 CCTGCTGCGGCAATCCTCCATCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCCAAGCC
15228474 A
839 A
* * *
15228475 ACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATACGCAAGTCAGGGACCG
1 ACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGACCG
* *
15228540 ACCCGATCCCCCCTGTGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCC-AGTCTCATCTTAGA
66 -CCCGATCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGA-TC-CATCTTAGA
*
15228604 CTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAATGAGCGTGTGGGCACTGAGCCGACCG
128 CTGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAATGAGCGTGCGGGCACTGAGCCGA-CG
* * * * * *
15228669 AAGAGCCATAATGCGCAAGTTGGGGATCGGCCCAGTCCCCCTTTACGTGCTGTCGGACCCACTAC
192 AAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTG-CGGTCCCACTAC
15228734 CACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
256 CACAACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* *
15228799 AAACGGGCGTGCAGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCTACTCGAT
320 AAACGGGCGTGCGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CGAT
*
15228864 CCCACCTGCGTGCTACCGATCCTGCTGCTACAACCCTCTGTCCGGTCTGATCTTAGACTGGGAAT
384 CCCACCTGCGTGCTACCGATCCTGCTGCTACAACCCTCTGTCCGGTCTAATCTTAGACTGGGAAT
* * * *
15228929 GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACAAGCGTG
449 GAACCCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAGAACAAGCGTA
* * *
15228994 CGGGCACTCAGCCCA-CCAGGAGAGACCGATCGGAAAGGCATAATGCGCAAGCCGAGGATCAGCC
514 CGGGCACTCA-ACCAGCCAGGAGAGACCGATCGAAAAGGCATAATACGCAAGCCGAGGATCAGCC
* * * *
15229058 CGATCC-CTTTTGCGTGCTGCCGATCCCGCTGCCGGTCCTATTGCCACAACCCTCGGTCCGACTG
578 CGATCCTCCTTTGCGTGCTGCCGATCCCGCTGCCAGTCCTACTGCCACAACCCTCAGTCCGACTG
* * * *
15229122 GGGCTTAGACATGGAATGAACTCCGTAT-CCTGAGCCATCCCATGAAATGAGCCTGCGGGTGCTC
643 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCCTACGGGCGCTC
*
15229186 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCG-GC-CCCCCTACGTGCTGCCAA
708 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAGCACCCCCTACGTGCTGCCAA
* * *
15229249 TCCTGCTGCTGGTC-TTGCTGCCGCAACCTTCGGTCCGACCCGATCTTAAACTGGGAATGAACTC
773 TCCTGCTGC-GG-CAATCCT--C-C-A--TCCGGT-----CCGATCTTAAACTGGGAATGAACTC
15229313 CGTATGCCCAAGCCA
825 CGTATGCCCAAGCCA
* *
15229328 ACCCATGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAAGTCGGGGACCA
1 ACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGACC-
* *
15229393 GCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGAC
65 GCCCGATCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCC-ATCTTAGAC
* * * * * *
15229458 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCAGTCGG
129 TGGGAATGAACTCCGTATGCATAAGTCAACCAACAAAATGAGCGTGCGGGCACTGAGCC-GACGA
* * * * *
15229523 AGAGGCATAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCCGCATGCTGCCGGTCTCACTACC
193 AGAGGCATAATGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTG-CGGTCCCACTACC
* * * * * *
15229588 ACAACCCTTGATTCGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCTCAA
257 ACAACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * *
15229653 AATGGCCGTGCGGGTGCTAAGTCGA-TCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCTGGT
321 AACGGGCGTGCGGGTGCTCAGCCGACT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-GAT
* *
15229717 CTCCA-TTGCGTGCTATCGATCCTGCTGCT
384 C-CCACCTGCGTGCTACCGATCCTGCTGCT
15229746 GGTCCTGCTA
Statistics
Matches: 1111, Mismatches: 132, Indels: 48
0.86 0.10 0.04
Matches are distributed among these distances:
841 26 0.02
842 6 0.01
843 73 0.07
844 236 0.21
845 355 0.32
846 6 0.01
848 5 0.00
852 3 0.00
853 395 0.36
854 6 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (839 bp):
ACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGACCG
CCCGATCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGATCCGATCCATCTTAGACTG
GGAATGAACTCCGTATGCATAAGTCAACCAACAAAATGAGCGTGCGGGCACTGAGCCGACGAAGA
GGCATAATGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGCGGTCCCACTACCACAA
CCCTCGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCGTGCGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCACCT
GCGTGCTACCGATCCTGCTGCTACAACCCTCTGTCCGGTCTAATCTTAGACTGGGAATGAACCCC
GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAGAACAAGCGTACGGGCAC
TCAACCAGCCAGGAGAGACCGATCGAAAAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCTC
CTTTGCGTGCTGCCGATCCCGCTGCCAGTCCTACTGCCACAACCCTCAGTCCGACTGGGGCTTAG
ACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCCTACGGGCGCTCAGCCGACC
GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAGCACCCCCTACGTGCTGCCAATCCTGCTG
CGGCAATCCTCCATCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCCAAGCCA
Found at i:15229819 original size:26 final size:26
Alignment explanation
Indices: 15229780--15229832 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15229770 TCGGTTCGAT
15229780 CTTAGACTGAGAATCAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* *
15229806 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATCAACTCCGTATG
15229832 C
1 C
15229833 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:15230037 original size:123 final size:123
Alignment explanation
Indices: 15229815--15230042 Score: 305
Period size: 123 Copynumber: 1.9 Consensus size: 123
15229805 GCTTAGACAT
* * ** *
15229815 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGATCGTGCGGGTGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGATCGTGCGGACGCTCAGCCGACCGGAA
* * *
15229880 AGGCAGAATGCATAAGCCGAGGATCGACCTGATCCCCCTCAGCATGCTGTTGATCTTG
66 AGGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCTCAGCATGCTGTTGATCTTG
* * *
15229938 GGAATGAACTCCGTATGCCTAAGTCAAACCACGAAATGAGT-GTGCGGACGCTGAGCCGACCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGA-TCGTGCGGACGCTCAGCCGACCGGA
* * * *
15230002 AAGGCATAATGCGCAAGCCAAGGATTGGCCCGATCCCCCTC
65 AAGGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCTC
15230043 TCCGTATTGT
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 88 0.99
124 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.28, T:0.17
Consensus pattern (123 bp):
GGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGATCGTGCGGACGCTCAGCCGACCGGAA
AGGCAGAATGCACAAGCCAAGGATCGACCCGATCCCCCTCAGCATGCTGTTGATCTTG
Found at i:15230280 original size:26 final size:26
Alignment explanation
Indices: 15230239--15230291 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15230229 CCGATCCGAT
*
15230239 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15230265 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
15230291 C
1 C
15230292 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15231067 original size:25 final size:26
Alignment explanation
Indices: 15231030--15231081 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15231020 GGCTCAAACT
15231030 CTTAGACAGGGAATGAACT-CCTATG
1 CTTAGACAGGGAATGAACTCCCTATG
*
15231055 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACAGGGAATGAACTCCCTATG
15231081 C
1 C
15231082 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCCTATG
Found at i:15231344 original size:159 final size:159
Alignment explanation
Indices: 15231064--15231557 Score: 523
Period size: 159 Copynumber: 3.1 Consensus size: 159
15231054 GCTTAGACAT
* * * * * * *
15231064 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCGA-CGTGCGAGCACTGAGTCGGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTCAGCCGGCCGGA
* * * ** *
15231128 GAGGCAGAATGGGCAAG-CTGGGGATC-AGCCCGGTCCCCCGCTGCGTGCTATCGGTCCCACTGC
65 GAGGCAAAATGCGCAAGTC-GGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGC
* *
15231191 CACAACCCTCGGTCCGATTCAATCTTAGATTG
128 CACAACCCTCGGTCCGGTTCGATCTTAGATTG
* * *
15231223 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * *
15231288 AGGCATAATGCACAAGTCGGGGATCGACCCGGTCCCCCTCTGCATGCTGCCGGTCCCGTTGCCAC
66 AGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
* * * **
15231353 AACCCTCGGTCTGGCTGGGGCTTAG-TCAT-
131 AACCCTCGGTCCGGTTCGATCTTAGAT--TG
* * * * * *
15231382 GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAACCGACAGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * * *
15231447 AGGCAAAATGCGTAAGTCGAGGATCGACCTGGT-CCCTTCTGTGTGCTGCCGATCCTGCTGCCAC
66 AGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
* *
15231511 AACCCTCGGTCCGGTCCGATCTTAGACTG
131 AACCCTCGGTCCGGTTCGATCTTAGATTG
15231540 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
15231558 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 54, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 64 0.23
159 206 0.75
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
AACCCTCGGTCCGGTTCGATCTTAGATTG
Found at i:15231560 original size:26 final size:26
Alignment explanation
Indices: 15231531--15231583 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15231521 CCGGTCCGAT
*
15231531 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
15231557 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
15231583 C
1 C
15231584 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:15232790 original size:157 final size:157
Alignment explanation
Indices: 15232278--15232904 Score: 612
Period size: 157 Copynumber: 4.0 Consensus size: 157
15232268 AACTCCGTAT
* * * * * * **
15232278 GCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCTATGAAATGAGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * **
15232343 CC-GACCGAAGAGGCAAAATGCATAAGCCGGGGATCGACCCT-GTCCCCCCTACGTGTTGTAGAT
66 CCAG-CCGAAGAGGCAGAATGCACAAGCCGGGGATCG-GCCTGGTCCCCCCTACGTGCTGCCGAT
* * * *
15232406 CCTGCTGCCACAACCCTCGGTCCGGTCCGA
129 CCCGCTGCCACAACCCTCAGTCCGG-CTGG
* ** * * * * * * * *
15232436 TCTTAGACGGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGCATTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * ** *
15232501 CCGGCCAAAGAGGCATAATGCGTAAGCCGGGGATCGG-CTCGGTCCCCCTCTACGTGCTGCCGGT
66 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCT-GGTCCCCC-CTACGTGCTGCCGAT
* *
15232565 CCCGCTACCACAACCCTCAGTCTGGCTGTG
129 CCCGCTGCCACAACCCTCAGTCCGGCTG-G
* * * *
15232595 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * * *
15232660 CCAGCCGGAGAGGTAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCCTTGCGTACTGCCGATCC
66 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGCCGATCC
* *
15232725 CGCTGCCATAACCCTCGGTCCGGCTGG
131 CGCTGCCACAACCCTCAGTCCGGCTGG
* * * * * *
15232752 GGTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * *
15232817 CCAACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
66 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGCCGATCC
* **
15232882 TGCTGCCATTACCCTCAGTCCGG
131 CGCTGCCACAACCCTCAGTCCGG
15232905 TTCGATCTTA
Statistics
Matches: 384, Mismatches: 79, Indels: 13
0.81 0.17 0.03
Matches are distributed among these distances:
156 2 0.01
157 136 0.35
158 124 0.32
159 120 0.31
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCAGTCCGGCTGG
Found at i:15232940 original size:26 final size:26
Alignment explanation
Indices: 15232911--15232963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15232901 CCGGTTCGAT
15232911 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
15232937 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15232963 C
1 C
15232964 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15233307 original size:26 final size:26
Alignment explanation
Indices: 15233269--15233321 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15233259 CTGGTCTGGT
15233269 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15233295 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15233321 C
1 C
15233322 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15233459 original size:183 final size:182
Alignment explanation
Indices: 15233114--15233481 Score: 451
Period size: 183 Copynumber: 2.0 Consensus size: 182
15233104 AACTGGGGCC
* * * *
15233114 TAGACATGGAATTAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGATGGCGCTCAGCTG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGATGGCACTCAGCCG
* * * *
15233179 GATGGAGAGACAAATGCACAAGCCGGGGATCATCTCGATCCCCCCTACGTGCTGTCGATCCTGCT
66 GAT-GAAAGACAAATGCACAAGCCGGAGATCACCTAGATCCCCCCTACGTGCTGTCGATCCTGCT
* * *
15233244 GCCGTAACCCTTGGTCTGGTCTGGTCTTAGACTGGGAATGAACTCCATATGCT
130 GCCGTAAACCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCT
15233297 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-TGGGCACTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAT-GGCACTCAGCC
* * * * **
15233361 GGCCAT-AAAGGCAGAATGCGCAAGTCGGAGATCGGCCTAG-TCCCCTTTACGTGCTGTCGATCC
65 GG--ATGAAAGACA-AATGCACAAGCCGGAGATC-ACCTAGATCCCCCCTACGTGCTGTCGATCC
* *
15233424 TGCTG-C-TACAACCTTCAGTCTGGTCTGAT-TTAGACTGGGAATGAACTTCGTATGCT
126 TGCTGCCGTA-AACCTT-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCT
15233480 TA
1 TA
15233482 AGTCAACCCA
Statistics
Matches: 159, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
182 3 0.02
183 98 0.62
184 53 0.33
185 5 0.03
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (182 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGATGGCACTCAGCCG
GATGAAAGACAAATGCACAAGCCGGAGATCACCTAGATCCCCCCTACGTGCTGTCGATCCTGCTG
CCGTAAACCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCT
Found at i:15233719 original size:159 final size:158
Alignment explanation
Indices: 15233300--15233794 Score: 400
Period size: 157 Copynumber: 3.1 Consensus size: 158
15233290 ATATGCTTAG
*
15233300 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGTGGGCACTCAGCCGGC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCACTCAGCC-GC
*** * * * * * **
15233364 CATAAAGGCAGAATGCGCAAGTCGGAGATCGGCCTAGT-CCCCTTTACGTGCTGTCGATCCTGCT
65 TGGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGATCCCACT
* * ** *
15233428 GCTACAACCTTCAGTCTGGTCTGATTTAG
130 GCCACAACCCTCAGTCCAGTCTGATTTAA
* * * * * ** * *
15233457 AC-TGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAAC-GAGCGTGTGCGTGCTAAGCCGG
1 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCACTCAGCCGC
* * * * * *
15233520 TCGGAGAGGCATAATGTGTAAGTCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCAC
65 T-GGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGATCCCAC
15233585 TGCCACAACCCTC-GATCCAG-CTAGGGA-TTAA
129 TGCCACAACCCTCAG-TCCAGTCT---GATTTAA
*
15233616 ACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCACTCAGCCGAC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCACTCAGCCG-C
* ** * * * * *
15233680 TGGAGAGGTAGAATGAGCAAACCGGGGATTGGCCTGGTCCCCC-C-ACGTGCTGCCTATCCTATT
65 TGGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGATCCCACT
** * * *
15233743 GCCGTAACCCTCGGTCCGGTCTGATCTTAG
130 GCCACAACCCTCAGTCCAGTCTGAT-TTAA
* *
15233773 A-TTGGGAATGAACTTCGTATGC
1 ACAT-GGAATGAACTCCGTATGC
15233795 TTAGACTAGG
Statistics
Matches: 264, Mismatches: 59, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
155 2 0.01
156 3 0.01
157 130 0.49
158 39 0.15
159 85 0.32
160 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCACTCAGCCGCT
GGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGATCCCACTG
CCACAACCCTCAGTCCAGTCTGATTTAA
Found at i:15243064 original size:26 final size:26
Alignment explanation
Indices: 15243026--15243078 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15243016 GCCTCAAAAT
*
15243026 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15243052 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15243078 C
1 C
15243079 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15243953 original size:26 final size:25
Alignment explanation
Indices: 15243915--15243966 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
15243905 TGGCTCAAAT
15243915 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCC-TATG
*
15243941 CTTAGACAT-GGAATGAACTCCTATG
1 CTTAGAC-TGGGAAAGAACTCCTATG
15243966 C
1 C
15243967 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 18 0.75
27 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGGAAAGAACTCCTATG
Found at i:15244392 original size:158 final size:157
Alignment explanation
Indices: 15243940--15244547 Score: 504
Period size: 158 Copynumber: 3.8 Consensus size: 157
15243930 AACTCCGTAT
* * *
15243940 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCTAACCCATGAAACGAGCGTGCGGG-CCTCA
1 GCTTAGAC-TGGGAATGAACTCCTTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* ** * *
15244002 GTCCGGCCGGAGAGGCAGAATGCGCAAGCAG-GGTATCGGTTCGGTCGCCCCCTGTGTGCTATCG
65 G-CCGACCGGAGAGGCAGAATGCGCAAGCAGAGG-ATC-GCCCGGTC-CCCCCTATGTGCTGTCG
* * *
15244066 ATCTTGCTACCGCAACCCTCTGTCCGGTCCGA
126 ATCCTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * * * * * *
15244098 TCTTAGACTGGGATTGAACT--TTGTACGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTG
1 GCTTAGACTGGGAATGAACTCCTTATAC-C-TAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC
* * * * * * *
15244161 AGCCGGCCGAAGAGGCATAATGCGCAAGCTGAGGA-CCCCCTGATCCCCCTTTATGTGCTGTC-A
64 AGCCGACCGGAGAGGCAGAATGCGCAAGCAGAGGATCGCCC-GGTCCCCC-CTATGTGCTGTCGA
* * ** * * *
15244224 GTCCCGCTGCCACAATACTCGGTCTGG-CTGGG
127 -TCCTGCTGCCGCAACCCTCGGTCCGGTC-CGA
* * *
15244256 GCTTAGACAT-GGAATGAACTCCTTATACCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTTA
1 GCTTAGAC-TGGGAATGAACTCCTTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * *
15244320 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGTTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCAGAGGATC-GCCCGGTCCCCCCTATGTGCTGTCGATC
* * *
15244385 CTACTGCCGTAACCCTCGATCCGGTCCGA
129 CTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * * *
15244414 TCTTAGACTGGGAATGAACTCCGTATGCCGAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCTTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
15244479 CCGATCGGAGAGGCAGAATGTGCAAATC-GGGGATCGACCCGATCCCCCCT-TCGTGCTG-CTGA
66 CCGACCGGAGAGGCAGAATGCGC-AAGCAGAGGATCG-CCCGGTCCCCCCTAT-GTGCTGTC-GA
15244541 TCCTGCT
127 TCCTGCT
15244548 ACTAGTCCTG
Statistics
Matches: 353, Mismatches: 75, Indels: 44
0.75 0.16 0.09
Matches are distributed among these distances:
157 14 0.04
158 258 0.73
159 67 0.19
160 14 0.04
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCTTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCAGAGGATCGCCCGGTCCCCCCTATGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGGTCCGA
Found at i:15244627 original size:26 final size:26
Alignment explanation
Indices: 15244585--15244637 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15244575 CCAGTCCGAT
*
15244585 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15244611 CTTAGACAT-GGAGTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15244637 C
1 C
15244638 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15247160 original size:27 final size:27
Alignment explanation
Indices: 15247119--15247170 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
15247109 CGAAAGAAGC
* *
15247119 AGTCCAAGGGGAAAGACCGTGACCGGG
1 AGTCCAAGGAGAAAGACCGAGACCGGG
* *
15247146 AGTCCAAGGATAAAGATCGAGACCG
1 AGTCCAAGGAGAAAGACCGAGACCG
15247171 TTCAACCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.35, T:0.10
Consensus pattern (27 bp):
AGTCCAAGGAGAAAGACCGAGACCGGG
Found at i:15251610 original size:26 final size:26
Alignment explanation
Indices: 15251572--15251624 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15251562 GGCTCAAAAT
*
15251572 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15251598 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15251624 C
1 C
15251625 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15251802 original size:26 final size:26
Alignment explanation
Indices: 15251766--15251817 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15251756 TCTGATCTGA
*
15251766 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAAACTGGGAATGAACTCCGTAT
*
15251792 TCTTAAACTGGGGATGAACTCCGTAT
1 TCTTAAACTGGGAATGAACTCCGTAT
15251818 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAAACTGGGAATGAACTCCGTAT
Found at i:15252174 original size:26 final size:26
Alignment explanation
Indices: 15252145--15252197 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15252135 CCGGTCTGAT
*
15252145 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15252171 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15252197 C
1 C
15252198 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15253405 original size:26 final size:25
Alignment explanation
Indices: 15253366--15253417 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
15253356 GGCTCAAACT
15253366 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
15253391 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
15253417 C
1 C
15253418 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:15253626 original size:159 final size:158
Alignment explanation
Indices: 15253390--15253695 Score: 479
Period size: 159 Copynumber: 1.9 Consensus size: 158
15253380 AACTCCGTAT
*
15253390 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
*
15253455 CCGGTCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTACTTCCAATC
66 CCGGTCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCT-TGCGTACTGCCAATC
15253520 CCGCTACCACAACCCTCGGTCCGACTGGG
130 CCGCTACCACAACCCTCGGTCCGACTGGG
* * *
15253549 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* ** * *
15253614 TCGGTC-GAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGCCAATC
66 CCGGTCAG-AGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTTGCGTACTGCCAATC
* *
15253678 CTGCTGCCACAACCCTCG
130 CCGCTACCACAACCCTCG
15253696 ATCCACTCTA
Statistics
Matches: 134, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
158 30 0.22
159 104 0.78
ACGTcount: A:0.23, C:0.34, G:0.27, T:0.16
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGTCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTTGCGTACTGCCAATCC
CGCTACCACAACCCTCGGTCCGACTGGG
Found at i:15253737 original size:26 final size:26
Alignment explanation
Indices: 15253708--15253760 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15253698 CCACTCTAAT
15253708 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
15253734 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15253760 C
1 C
15253761 CTACGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15253932 original size:26 final size:26
Alignment explanation
Indices: 15253903--15253955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15253893 TCGATCCGAT
*
15253903 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
15253929 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15253955 C
1 C
15253956 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:15254279 original size:117 final size:117
Alignment explanation
Indices: 15254088--15254304 Score: 274
Period size: 117 Copynumber: 1.9 Consensus size: 117
15254078 TCGTTCTGAT
* * * * * * *
15254088 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAGGAGCATACGGGCGCTCAGC
* * * *
15254153 CGGTTGGAGAGGCATAATGCACAAACCGGGGATCAACTCAGTCCGACTGGGG
66 CGATCGGAGAGGCAGAATACACAAACCGGGGATCAACTCAGTCCGACTGGGG
* * *
15254205 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGACAGGAGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAGGAGCATACGGGCGCTCAG
* *
15254269 CCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCA
65 CCGATCGGAGAGGCAGAATACACAAACCGGGGATCA
15254305 GCCCGGTCCC
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
117 82 0.99
118 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.29, T:0.16
Consensus pattern (117 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAGGAGCATACGGGCGCTCAGC
CGATCGGAGAGGCAGAATACACAAACCGGGGATCAACTCAGTCCGACTGGGG
Found at i:15255490 original size:26 final size:26
Alignment explanation
Indices: 15255439--15255491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15255429 CCGGTTCGAT
* *
15255439 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACATATG
*
15255465 CTTAGACTAGGGATGAACTACATATG
1 CTTAGACTAGGAATGAACTACATATG
15255491 C
1 C
15255492 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACATATG
Found at i:15255880 original size:159 final size:157
Alignment explanation
Indices: 15255547--15256086 Score: 435
Period size: 159 Copynumber: 3.4 Consensus size: 157
15255537 AGAGGCCTGT
* * * *
15255547 CGGAGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCTC-TGCATGCTGTCGATCCTGC
1 CGGAGAGGCAAAATGCGCAAGC-GGGGATCGACC-CGTCCCCC-CATGCGTGCTGTCGATCCTGC
* * * * * *
15255611 TGCCCCAACCCTCGGTTTGGTCTAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCC
63 TACCCCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCC
* **
15255676 ACGAAATGAGCGTACGGGTGCTCAGCCGGT
128 ACGAAATGAGCGTACGGGCGCTCAGCCGAC
* *
15255706 CGGAAAGGCAAAATGCGCAAGTCGGGGACCGACCCAGTCCCCCCATGCGTGCTGTCGATCCTGCT
1 CGGAGAGGCAAAATGCGCAAG-CGGGGATCGACCC-GTCCCCCCATGCGTGCTGTCGATCCTGCT
* * *
15255771 ACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCA
64 ACCCCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCA
* * * * *
15255836 GGAAATGAGTGTGCGGGCGCTGAGCTGAC
129 CGAAATGAGCGTACGGGCGCTCAGCCGAC
* * * * * * * *
15255865 CGGAGAGGTATAATGCGCAAGCCGGAGATCGGCCCGATCCCCCTATGCGTGCTGCCGGTCCCGCT
1 CGGAGAGGCAAAATGCGCAAG-CGGGGATCGACCCG-TCCCCCCATGCGTGCTGTCGATCCTGCT
* * ** **** * **
15255930 GCCACAACCCTTGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCATTATGCCTAAGCCAACC
64 ACCCCAACCCTCAGTCTGGTC-CAATCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACC
* * * * * *
15255993 CATGAAACGGGCGTGCGGGCGCTCAGCTGGC
127 CACGAAATGAGCGTACGGGCGCTCAGCCGAC
* * * * * * *
15256024 CAGAGAGGC-AGATGCGTAAGCCGGGGATTTG-GCCGATCCCTCC-TGCGTGCTGCCGATCCTGC
1 CGGAGAGGCAAAATGCGCAAG-CGGGGA-TCGACCCG-TCCCCCCATGCGTGCTGTCGATCCTGC
15256086 T
63 T
15256087 GTCGCAACCT
Statistics
Matches: 310, Mismatches: 64, Indels: 16
0.79 0.16 0.04
Matches are distributed among these distances:
157 18 0.06
158 26 0.08
159 264 0.85
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
CGGAGAGGCAAAATGCGCAAGCGGGGATCGACCCGTCCCCCCATGCGTGCTGTCGATCCTGCTAC
CCCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCACG
AAATGAGCGTACGGGCGCTCAGCCGAC
Found at i:15256151 original size:26 final size:26
Alignment explanation
Indices: 15256111--15256162 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15256101 CCGATCCGAT
* *
15256111 TTAGACTGGATATGAACTCTGTATGC
1 TTAGACTGGAGATGAACTCCGTATGC
*
15256137 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGAGATGAACTCCGTATGC
15256163 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGAGATGAACTCCGTATGC
Found at i:15256871 original size:26 final size:26
Alignment explanation
Indices: 15256833--15256885 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15256823 GGCTCAAACT
* *
15256833 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
15256859 CTTAGACAT-GGAATGAAATCCATATG
1 CTTAGAC-TGGGAATGAAATCCATATG
15256885 C
1 C
15256886 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:15257216 original size:26 final size:26
Alignment explanation
Indices: 15257175--15257227 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15257165 CCAGTTCGAT
*
15257175 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACCGGGAATGAACCCCGTATG
* **
15257201 CTTAGACCGGGGATGAACTTCGTATG
1 CTTAGACCGGGAATGAACCCCGTATG
15257227 C
1 C
15257228 CTAACTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACCCCGTATG
Found at i:15258028 original size:26 final size:26
Alignment explanation
Indices: 15257999--15258051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15257989 CCGGTCCGAT
*
15257999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15258025 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15258051 C
1 C
15258052 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15258816 original size:161 final size:160
Alignment explanation
Indices: 15258397--15258900 Score: 452
Period size: 161 Copynumber: 3.1 Consensus size: 160
15258387 CCGTATGCTG
* * * * *
15258397 AGACATGGAATGAACTTCGTATGCCTAAGCCAACGCCACGAAACGAGCATGCGAGCGCTCAGCCG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CCATGAAACGAGCGTGCGGGTGCTCAGCCG
* *
15258462 ATCGGAGAGGGCAGAA-AGCGTAAGCCGGGGACCGA-CCAGATCCCCCATACGTGCTATCGATCC
65 ATCGGAGA-GGCAGAATA-CGTAAGCCGGGGATCGACCCAGATCCCCCATACATGCTATCGATCC
* ** * * *
15258525 TGTTGCCCGCAATCTTCGGTCTGATCCGATCTT
128 TGTTACCAACAACCCTCGGTCTGATCCGAGCTT
* * * *
15258558 AGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTAAGTCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * ** * * * *
15258622 -GCTGGAGAGGCATAATGCGCAAGCCAAGGATCGACCCCGGTCCCCTTC-TGCATGCTGTCGATC
65 ATC-GGAGAGGCAGAATACGTAAGCCGGGGATCGACCCAGATCCCC--CATACATGCTATCGATC
* * ** *
15258685 CTGTTACCAACAACCCTCAGT-TCGGTTGGGGCTT
127 CTGTTACCAACAACCCTCGGTCT-GATCCGAGCTT
*
15258719 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGTGCTCAGCCG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGTGCTCAGCCG
* * * ** *
15258783 ATCGGAGAGGCAGAATACGTAAGTCGGGGATCGACCCA-ATCCCCCCTACGTGCTGCCGATCCTA
65 ATCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCAGATCCCCCATACATGCTATCGATCCTG
* * * *
15258847 CTACC-ACAACCCTCGGTCTGGTCTGATCTT
130 TTACCAACAACCCTCGGTCTGATCCGAGCTT
*
15258877 AGAC-TGGGAATGAACTCTGTATGC
1 AGACAT-GGAATGAACTCCGTATGC
15258901 TTAGACTAGG
Statistics
Matches: 272, Mismatches: 58, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 39 0.14
159 39 0.14
160 44 0.16
161 146 0.54
162 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (160 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGA
TCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCAGATCCCCCATACATGCTATCGATCCTGT
TACCAACAACCCTCGGTCTGATCCGAGCTT
Found at i:15258903 original size:26 final size:26
Alignment explanation
Indices: 15258874--15258926 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15258864 CTGGTCTGAT
15258874 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
15258900 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
15258926 C
1 C
15258927 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:15259209 original size:26 final size:26
Alignment explanation
Indices: 15259180--15259232 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15259170 CTGGTCCGAT
15259180 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15259206 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15259232 C
1 C
15259233 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15259553 original size:159 final size:156
Alignment explanation
Indices: 15259206--15259697 Score: 512
Period size: 158 Copynumber: 3.1 Consensus size: 156
15259196 ACTCCGTATG
* **
15259206 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCACTCAGC
** * * * * *
15259271 C-AGTTAGAGAGGCAGAATGCACAAGCTGGGGA-CCGACCCGATGCCTCCTACGTGCTGTCGATC
65 CGA-TCGGAGAGGCAGAATGCGCAAGC-GGGGATCAG-CCCGGTCCCTCCTGCGTGCTGTCGATC
* * *
15259334 CTGGTGCCGCAACCCTCTGTCCGGTCTGAT
127 CTGCTGCCACAACCCTCAGTCCGGTCTGAT
* * *
15259364 CTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCACTCAG
* * *
15259428 CCGATCGGAGAGGCATAATGCGCAAGCAGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATC
64 CCGATCGGAGAGGCAGAATGCGCAAGC-GGGGATCAGCCCGGTCCCTC-CTGCGTGCTGTCGATC
* * *
15259493 CCGCTGCCATAACCCT-AGCTCCGG-CTGGGT
127 CTGCTGCCACAACCCTCAG-TCCGGTCT-GAT
* * * * *
15259523 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTGCAGGCACTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAG-CGTGCGGGCACTCAGC
* * *
15259588 CGACCGGAGAGGCAGAATTCGCAAGTCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAG-CGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCCT
* * *
15259653 GCTGTCGCAACCCTCGGTCCGGT-TCGAT
129 GCTGCCACAACCCTCAGTCCGGTCT-GAT
15259681 CTTAGAC-TGGGAATGAA
1 CTTAGACAT-GGAATGAA
15259698 TGCCATTTGC
Statistics
Matches: 278, Mismatches: 44, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 144 0.52
159 130 0.47
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAGCGTGCGGGCACTCAGCC
GATCGGAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCAGTCCGGTCTGAT
Found at i:15260609 original size:26 final size:26
Alignment explanation
Indices: 15260573--15260651 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15260563 CCGGTCTGAT
* *
15260573 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
15260599 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
15260625 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
15260651 C
1 C
15260652 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:15261455 original size:26 final size:26
Alignment explanation
Indices: 15261426--15261478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15261416 CTGGTCCGAT
** *
15261426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
15261452 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
15261478 C
1 C
15261479 CTAAGCCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:15261639 original size:26 final size:26
Alignment explanation
Indices: 15261610--15261662 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15261600 CCGATCTGAT
15261610 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
*
15261636 CTTAGACTGGGGAAGAAGTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
15261662 C
1 C
15261663 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:15262863 original size:26 final size:26
Alignment explanation
Indices: 15262824--15262876 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15262814 TCGGTCTAAT
* *
15262824 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
15262850 CTTAGACATG-GAATCAACTCCGTATG
1 CTTAGAC-TGAGAATCAACTCCGTATG
15262876 C
1 C
15262877 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:15263087 original size:26 final size:26
Alignment explanation
Indices: 15263018--15263080 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
15263008 TCATAGACTG
15263018 GGAATGAACTCCATATGCTTAGACAT
1 GGAATGAACTCCATATGCTTAGACAT
15263044 GGAATGAACTCCATATGCTTAGACAT
1 GGAATGAACTCCATATGCTTAGACAT
15263070 GGAATGAACTC
1 GGAATGAACTC
15263081 TGTATGCCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (26 bp):
GGAATGAACTCCATATGCTTAGACAT
Found at i:15263564 original size:26 final size:26
Alignment explanation
Indices: 15263535--15263587 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15263525 TCGGTCCGAT
*
15263535 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15263561 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15263587 C
1 C
15263588 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15263931 original size:26 final size:26
Alignment explanation
Indices: 15263902--15263952 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15263892 CCGATCTGAT
15263902 CTTAGAC-TGGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
15263928 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
15263953 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:15264020 original size:367 final size:366
Alignment explanation
Indices: 15263514--15264195 Score: 845
Period size: 367 Copynumber: 1.9 Consensus size: 366
15263504 CCTACTACCG
* * * * * *
15263514 CAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAAC
* * * * * *
15263579 TTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGAGGCATAAT
66 TCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGAGCTCAGCCGGCCAGAGAGGCAGAAT
** * * * * *
15263644 GTGCAAGCCGAGGATTAG-CTCGGTCCCTATCTGCGTGCTGTCGATCC-CACTGTCGA-TCCTAC
131 GCACAAGCCGAGGA-TAGACCCGATCCC-ACCTGCGTGCTGCCAATCCTC-CTG-CGAGTCCTAC
* * * *
15263706 TGCCACACCCCTC-AGTCCGG-CTAGGGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAAC
192 TACCACAACCCTCGA-TCCGGTCT-GAGCTTAGACACGGAATGAACTACGTATGCCTAAGCCAAC
* *
15263769 ACACGAAACGAGCGTGCGAGCGCTTAGCCGACCGGAGAGGCAGAATGCACAAGTCGGGGATTGGC
255 ACACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGGGGATTGGC
15263834 TCGATCCCCCCTACGTGCTACCAATCTTGCTGCTGGTCCTGCTATCA
320 TCGATCCCCCCTACGTGCTACCAATCTTGCTGCTGGTCCTGCTATCA
*
15263881 CAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACAT-GGAATGAA
1 CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGAC-TGGGAATGAA
* * *
15263945 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGAGCTCAGCTGGCCAGAGAGGCAGAA
65 CTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGAGCTCAGCCGGCCAGAGAGGCAGAA
* * * **
15264010 TGCACAAGCCGAGGATCGACCCGATCCCACCTGCGTGCTGCCAATCCTCCTGCTAGTCTTGTTAC
130 TGCACAAGCCGAGGATAGACCCGATCCCACCTGCGTGCTGCCAATCCTCCTGCGAGTCCTACTAC
* * ** *
15264075 CACAACCGTCGATCCGGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACTCACG
195 CACAACCCTCGATCCGGTCTGAGCTTAGACACGGAATGAACTACGTATGCCTAAGCCAACACACG
* * * * ** *
15264140 AAATGAGTGTGCGGGTGCTCAGTTGGCCAGAGAGGCAGAATGCACAAGTCGGGGAT
260 AAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGGGGAT
15264196 CGATCCGATC
Statistics
Matches: 263, Mismatches: 46, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
365 2 0.01
366 125 0.48
367 135 0.51
368 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (366 bp):
CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGAGCTCAGCCGGCCAGAGAGGCAGAAT
GCACAAGCCGAGGATAGACCCGATCCCACCTGCGTGCTGCCAATCCTCCTGCGAGTCCTACTACC
ACAACCCTCGATCCGGTCTGAGCTTAGACACGGAATGAACTACGTATGCCTAAGCCAACACACGA
AACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGGGGATTGGCTCGATC
CCCCCTACGTGCTACCAATCTTGCTGCTGGTCCTGCTATCA
Found at i:15264081 original size:196 final size:196
Alignment explanation
Indices: 15263732--15264122 Score: 548
Period size: 196 Copynumber: 2.0 Consensus size: 196
15263722 CCGGCTAGGG
* * *
15263732 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGAGCGCTTAGC
1 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCGAGAGCTCAGC
* * * * * * * *
15263797 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCTCGATCCCCCCTACGTGCTACCAATCTT
66 CGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCTACGTGCTACCAATCCT
* * * *
15263862 GCTGCTGGTCCTGCTATCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
131 CCTGCTAGTCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTACGTAT
15263927 C
196 C
* * *
15263928 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGAGCTCAGC
1 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCGAGAGCTCAGC
* * * *
15263993 TGGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCTGCGTGCTGCCAATCCT
66 CGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCTACGTGCTACCAATCCT
* * * *
15264058 CCTGCTAGTCTTGTTACCACAACCGTCGATCCGGTCTGATCTTAGACTGGGAATGAACTACGTAT
131 CCTGCTAGTCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTACGTAT
15264123 GCCTAAGCCA
Statistics
Matches: 169, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
196 169 1.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (196 bp):
CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCGAGAGCTCAGC
CGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCTACGTGCTACCAATCCT
CCTGCTAGTCCTGCTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTACGTAT
C
Found at i:15264364 original size:158 final size:158
Alignment explanation
Indices: 15264076--15264514 Score: 406
Period size: 158 Copynumber: 2.8 Consensus size: 158
15264066 TCTTGTTACC
* * *
15264076 ACAACCGTCGATCCGGTCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACTCACGA
1 ACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGA
* * * ** * * *
15264141 AATGAGTGTGCGGGTGCTCAGTTGGCCAGAGAGGCAGAATGCACAAGTCGGGGATCGATCCGATC
66 AACGAGGGTGCAGGCACTCAGCTGGCCAGAAAGGCAGAATGCACAAGTCGGGGATCGACCCGATC
15264206 CCTCCGGTGTGCTGTCGATCCTGCTACT
131 CCTCCGGTGTGCTGTCGATCCTGCTACT
* * *
15264234 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CTGTTTGCCTAAGTCAACCCACG
1 ACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTAC-GTATGCCTAAGCCAACCCACG
* * * * **
15264298 AAACGAGGGTGCAGGCATTGAGCTGGCCGGAAAGGCATAATGCTTAAGTCGGGGATCTG-CCCGA
65 AAACGAGGGTGCAGGCACTCAGCTGGCCAGAAAGGCAGAATGCACAAGTCGGGGATC-GACCCGA
** * *
15264362 TCCCTCTCTATGTGCTG-CCAGT-CTCGCT-GT
129 TCCCTC-CGGTGTGCTGTCGA-TCCT-GCTACT
** ** * *
15264392 CACAACCCTCGATCCGGTTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 -ACAACCCTCGATCCGGTCCGATCTTAGAC-TGGGAATGAACTACGTATGCCTAAGCCAACCCAC
* * ** * * * * *
15264456 GAAATG-GGCGTACAGGCACTCAGCCAGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCG
64 GAAACGAGG-GTGCAGGCACTCAGCTGGCCAGAAAGGCAGAATGCACAAGTCGGGGATCG
15264515 GCCCTGTCCC
Statistics
Matches: 228, Mismatches: 44, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 118 0.52
159 107 0.47
160 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (158 bp):
ACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGA
AACGAGGGTGCAGGCACTCAGCTGGCCAGAAAGGCAGAATGCACAAGTCGGGGATCGACCCGATC
CCTCCGGTGTGCTGTCGATCCTGCTACT
Found at i:15264601 original size:26 final size:26
Alignment explanation
Indices: 15264572--15264622 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15264562 CCGGTCCAAT
15264572 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
15264598 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15264623 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15265377 original size:173 final size:173
Alignment explanation
Indices: 15265074--15265421 Score: 448
Period size: 173 Copynumber: 2.0 Consensus size: 173
15265064 ACCGATCCTA
** * *
15265074 CTGCAGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA
1 CTGCAGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGA
* * * * *
15265139 ATGAACTCTATAAGCCTAAACCTACCCACAAAATGAGTGTGCGGGTACTCAGCTGATCAGAGAGG
66 ATGAAATCTATAAGCCTAAACCAACCCACAAAATGAGCGTGCGGGTACTCAGCCGACCAGAGAGG
* * * *
15265204 TAGAATGCGCAAGCTGAGGATCGACCTGGTCCCT-CCTCGCGTG
131 TAGAATGCACAAGCTGAGGACCGACCCGATCCCTACCT-GCGTG
* *
15265247 CTGCTGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGA
1 CTGCAGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGA
* * * *** * *
15265312 ATGAAATCTGTATGCCTAAGCCAACCCTTGAAATGAGCGTGC-GGTCGCTCAGCCGACCGGAGAG
66 ATGAAATCTATAAGCCTAAACCAACCCACAAAATGAGCGTGCGGGT-ACTCAGCCGACCAGAGAG
*
15265376 GTAGAATGCACAAGCTGGGGACCGACCCGATCCCTACCTGCGTG
130 GTAGAATGCACAAGCTGAGGACCGACCCGATCCCTACCTGCGTG
15265420 CT
1 CT
15265422 ATCGATCCTA
Statistics
Matches: 149, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
172 3 0.02
173 143 0.96
174 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (173 bp):
CTGCAGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGA
ATGAAATCTATAAGCCTAAACCAACCCACAAAATGAGCGTGCGGGTACTCAGCCGACCAGAGAGG
TAGAATGCACAAGCTGAGGACCGACCCGATCCCTACCTGCGTG
Found at i:15265802 original size:26 final size:26
Alignment explanation
Indices: 15265773--15265825 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15265763 CTGGTCTGAT
*
15265773 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
15265799 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15265825 C
1 C
15265826 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15266530 original size:26 final size:26
Alignment explanation
Indices: 15266492--15266544 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15266482 GGCTCAAGCT
15266492 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15266518 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15266544 C
1 C
15266545 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15266821 original size:158 final size:158
Alignment explanation
Indices: 15266517--15266858 Score: 376
Period size: 158 Copynumber: 2.2 Consensus size: 158
15266507 AACTCCATAT
* * * * *
15266517 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGGAATGAGCGTCCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCATGAAAAGAGCGTCCAGGCGCTCAA
* * *
15266582 CCGATCGGAGAGGCAGAATGCATAAGTCGGGGATCGACTCGGTCCCCCTCTGCGTCTGTCGATCC
66 CCGATCGAAGAAGCAGAATGCATAAGTCGGGGATAGACTCGGTCCCCCTCTGCGTCTGTCGATCC
* *
15266647 CGCTGCCACAATCCTCGGTCTGGCTGGG
131 CGCTACCACAACCCTCGGTCTGGCTGGG
* *
15266675 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACAG-GCGTGC-GAGCGCTC
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCATGAAA-AGAGCGTCCAG-GCGCTC
* *
15266738 AACCGA-CTGAAGAAGCAGAATGCGA-AAGTCGTGGATTAG-CTCGGTCCCCCT-TGCGTGTTGT
64 AACCGATC-GAAGAAGCAGAATGC-ATAAGTCGGGGA-TAGACTCGGTCCCCCTCTGCGT-CTGT
* * * *
15266799 CGATCCTGCTACTACAACCCTCGGTTTGGTCT-GA
125 CGATCCCGCTACCACAACCCTCGGTCTGG-CTGGG
* *
15266833 TCTTAGAC-TGGGAATGAACTTCATAT
1 GCTTAGACAT-GGAATGAACTCCATAT
15266859 TCTTAGACTG
Statistics
Matches: 155, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
157 8 0.05
158 141 0.91
159 6 0.04
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCATGAAAAGAGCGTCCAGGCGCTCAA
CCGATCGAAGAAGCAGAATGCATAAGTCGGGGATAGACTCGGTCCCCCTCTGCGTCTGTCGATCC
CGCTACCACAACCCTCGGTCTGGCTGGG
Done.