Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 121 of 402
Found at i:15267081 original size:26 final size:26
Alignment explanation
Indices: 15267043--15267098 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15267033 CCAGTCCGAT
*
15267043 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
15267069 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCTATATG
15267095 CTTA
1 CTTA
15267099 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:15267832 original size:318 final size:318
Alignment explanation
Indices: 15267224--15267832 Score: 715
Period size: 318 Copynumber: 1.9 Consensus size: 318
15267214 GTTTAATCTA
* * *
15267224 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTTCGGGCGTTGA
1 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCGTTGA
* * * ** * * *
15267289 GCCGGCCAAAGAGGCATAATGCGTAAGTCGGGGATCGACTCGATACCCCTCTGCGTGCTATCAGT
66 GCCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATACCCCTCTACGTGCTACCAGT
* * * *
15267354 CTCACTGCCACAACCCTTGGTCTGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCC
131 CCCACTGCCACAACCCTCGGTCTGACTAGGGCTTAAACATGGAATGAACTCCCTATCCCTAAGCC
* * * * *
15267419 AACCCACGAAACAGGCATGCGGGGGCTCAACCAGCCCGGAAGGCAGAATGGGCAAACCGAGTATT
196 AACCCACGAAACAGGCATGCGGGGACTCAACCAGCCAGGAAGGCAGAATGCGCAAACCGAGGATC
* * *
15267484 AGCCTGGTCATACCCTTCGTGCTGTCGATCTTACTGTCGCAACCCTCGGTCCGGTTCG
261 AGCCTGGTCATACCCTGCATGCTATCGATCTTACTGTCGCAACCCTCGGTCCGGTTCG
* * *
15267542 ATCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGT-GGGTGTTG
1 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT-TCGGGCGTTG
* * * *
15267606 AGCCGACCGAAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGAT-CCCTCTCTACGTGCTGCCG
65 AGCCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATACCC-CTCTACGTGCTACCA
* * * * * *
15267670 GTCCCGCTGCCACAACCCTCGGTTTGGCTATGGCTTAGACATGGAATGAACTCTCTATCCCTAAG
129 GTCCCACTGCCACAACCCTCGGTCTGACTAGGGCTTAAACATGGAATGAACTCCCTATCCCTAAG
* ** * * * * * * *
15267735 CCAACCCATGAAATTGGCGTGCGGGTACTCAACCGGTCA-GAGAGGCAGAATGCGCAAGCTGGGG
194 CCAACCCACGAAACAGGCATGCGGGGACTCAACCAGCCAGGA-AGGCAGAATGCGCAAACCGAGG
*
15267799 ATCAG-CTCGGTCCT-CCACTGCATGCTATCGATCT
258 ATCAGCCT-GGTCATACC-CTGCATGCTATCGATCT
15267833 CACTACCGAT
Statistics
Matches: 239, Mismatches: 47, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
317 9 0.04
318 229 0.96
319 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (318 bp):
ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCGTTGA
GCCGACCAAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATACCCCTCTACGTGCTACCAGT
CCCACTGCCACAACCCTCGGTCTGACTAGGGCTTAAACATGGAATGAACTCCCTATCCCTAAGCC
AACCCACGAAACAGGCATGCGGGGACTCAACCAGCCAGGAAGGCAGAATGCGCAAACCGAGGATC
AGCCTGGTCATACCCTGCATGCTATCGATCTTACTGTCGCAACCCTCGGTCCGGTTCG
Found at i:15268080 original size:26 final size:26
Alignment explanation
Indices: 15268042--15268095 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
15268032 CTAGTCTGAT
*
15268042 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15268068 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
15268094 CT
1 CT
15268096 AAGCCAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15268543 original size:26 final size:26
Alignment explanation
Indices: 15268514--15268566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15268504 CCGATTTGAT
15268514 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15268540 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15268566 C
1 C
15268567 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15269275 original size:26 final size:26
Alignment explanation
Indices: 15269237--15269289 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15269227 GGCTCAAACT
15269237 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15269263 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15269289 C
1 C
15269290 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15269618 original size:26 final size:26
Alignment explanation
Indices: 15269577--15269629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15269567 CTGGTCTGAT
15269577 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
15269603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15269629 C
1 C
15269630 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15270901 original size:26 final size:26
Alignment explanation
Indices: 15270872--15270924 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15270862 CCGGTCCAAT
*
15270872 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15270898 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15270924 C
1 C
15270925 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15271619 original size:26 final size:26
Alignment explanation
Indices: 15271581--15271633 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15271571 CTGATCCAAT
15271581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15271607 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15271633 C
1 C
15271634 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15271912 original size:159 final size:158
Alignment explanation
Indices: 15271610--15272061 Score: 430
Period size: 159 Copynumber: 2.8 Consensus size: 158
15271600 CCGTATGCTT
* *
15271610 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGTGCGGGTGCTCAA
1 AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AA--AG-G-GCGTGCGGGTGCTCAA
* * * *
15271675 CCGACCAGAGAGGCAGAATGCCCAAGCCAGGGATCGACCTGGTCCACCCCTACGTGCTGTCGATC
61 CCGATCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGTCCACCCCTACGTGCTGTCGATC
* * *
15271740 CTGCTGCCGCAACCCTCCATCTGATCT-GGCCTG
126 CTGCTGCCACAACCCTCCATCCG-GCTGGGCCTG
* * * * *
15271773 AGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAACGTGCGGGTGCTGAACAGA
1 AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGG-GCGTGCGGGTGCTCAACCGA
* * * * * ** * *
15271838 TCGGAGAGGCATAATGTGCAAGCTAGGGATTGGCCTGGTCC-CCCTCTGTGTGTTGTCGGT-CTC
65 TCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGTCCACCC-CTACGTGCTGTCGATCCT-
** * *
15271901 GCTGCCACAACCCTCGGTCCGGCTGGGGCTT
128 GCTGCCACAACCCTCCATCCGGCTGGGCCTG
* * * *
15271932 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAAGGGCATGCGGG-GCCTCAACCG
1 AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAAGGGCGTGCGGGTG-CTCAACCG
* * * * *
15271996 ATCGGAGAGGCAAAATGCGCAAGTCGGGGATC-AGCTCGGTCC-CCCCTGCATGCTGTCGATCCT
64 ATCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCT-GGTCCACCCCTACGTGCTGTCGATCCT
15272059 GCT
128 GCT
15272062 ATCGCAACGC
Statistics
Matches: 234, Mismatches: 48, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
158 24 0.10
159 166 0.71
160 7 0.03
162 2 0.01
163 35 0.15
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGGCGTGCGGGTGCTCAACCGAT
CGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGTCCACCCCTACGTGCTGTCGATCCTGCT
GCCACAACCCTCCATCCGGCTGGGCCTG
Found at i:15272128 original size:26 final size:26
Alignment explanation
Indices: 15272087--15272139 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15272077 CTAGTCTGAT
15272087 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * * *
15272113 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15272139 C
1 C
15272140 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15273142 original size:159 final size:156
Alignment explanation
Indices: 15272847--15273348 Score: 422
Period size: 159 Copynumber: 3.2 Consensus size: 156
15272837 ACTCCGTATG
* * * *
15272847 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGG-AGCTCA
1 CTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCA-CTCA
* * * * * ** ** * * *
15272910 GCCGA-CTGGAGAGGCAGAATGCACAAGTCAGGGATCAACTTAGTCCCGCCCTATGTGCTGTCAA
64 GCCGATC-GAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGT-AC-CCCTACGTGCTGTCGA
**
15272974 TCCTACTGCCGCAACCCTCGGTCCAGTCCGAT
126 TCCCGCTGCCGCAACCCTCGGTCC-GTCCGAT
* * * *
15273006 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCATTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
* * * * * *
15273071 CGATCGAAGAGGCAAAATGTGCAAGTCTGTGATCGGCCCAGTCCCCCT-CTGTG-TACGTCTGGT
66 CGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTACCCCTAC-GTGCT--GTC-GAT
* * * * **
15273134 CCCGCTGCCACAACCCTCAGTCCGGCTGGGG
127 CCCGCTGCCGCAACCCTCGGTCCGTC-CGAT
* * ** *
15273165 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * ** *
15273229 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTACCCCTACGTGCTGTCGATCCT
65 CCGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTACCCCTACGTGCTGTCGATCCC
* *
15273294 GCGGCCGTAACCCTCGGTCCGGTCCGAT
130 GCTGCCGCAACCCTCGGTCC-GTCCGAT
15273322 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACTAGGAATGAACTCCATATGC
15273349 TTAAACTGAG
Statistics
Matches: 274, Mismatches: 56, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 52 0.19
158 14 0.05
159 202 0.74
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGC
CGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTACCCCTACGTGCTGTCGATCCCG
CTGCCGCAACCCTCGGTCCGTCCGAT
Found at i:15273740 original size:26 final size:26
Alignment explanation
Indices: 15273702--15273754 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15273692 CTGGCTCGAT
15273702 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15273728 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15273754 C
1 C
15273755 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15273834 original size:367 final size:358
Alignment explanation
Indices: 15273138--15273836 Score: 791
Period size: 367 Copynumber: 1.9 Consensus size: 358
15273128 TCTGGTCCCG
*
15273138 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * ***
15273203 CACGAAACGGGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
66 CACGAAACGAGCGAGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * * * *
15273268 TGGTACCCCTACGTGCTGTCGATCCTGCGGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTAGG
131 TGATACCCCTACGTACTGTCAATCCTGCGGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGG
* * *
15273333 AATGAACTCCATATGCTTAAACTGAGGATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGA
196 AATGAACTCCATATGCTTAAACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGA
* *
15273398 GTGCGGGCACTTAGCCGATCGGAGAGGTCGACCGGAGAGACATAATGTGTAAGCCGAGGATCAAC
261 GTGCGGGCACTTAGCC-AT----GA----GACCGGAGAGACAGAATGTGCAAGCCGAGGATCAAC
15273463 CCGGTCCACCTCTCCGTGCTGCTGATCCTGCTGTTGGTCCTA
317 CCGGTCCACCTCTCCGTGCTGCTGATCCTGCTGTTGGTCCTA
* * *
15273505 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
15273570 CACGAAATGAGCGAGCGGGCGCTCCGCCAACCGGAGAGGCAGAATGCTCAAGCCGGGGATCGG-C
66 CACGAAACGAGCGAGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * *
15273634 TCGATCCCCCCTGCGTACTGTCAATCCTGCTTCTGGTTCTGCTACCGCAACCCTCGATCTGG-CT
131 T-GAT-ACCCCTACGTACTGTCAATCCTG---C--G----G---CCGCAACCCTCGATCCGGTC-
* * * *
15273698 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG-GAATGAACTCTGTATGCCTAAGCC
181 CGATCTTAGACTAGGAATGAACTCCATATGCTTAAAC-TGAGAATGAACTCCGTATGCCTAAGCC
* * * * *
15273762 AACCCACGAAATGAGCGTGCGGGCGCTTAG-C-T-A-ACCGGAGAGGCAGAATGTGCAAGCCGGG
245 AACCCACGAAACGAGAGTGCGGGCACTTAGCCATGAGACCGGAGAGACAGAATGTGCAAGCCGAG
*
15273823 GATCGACCCGGTCC
310 GATCAACCCGGTCC
15273837 CCCCTGCGTG
Statistics
Matches: 279, Mismatches: 37, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
366 2 0.01
367 153 0.55
368 19 0.07
371 1 0.00
372 1 0.00
373 1 0.00
377 2 0.01
379 2 0.01
380 96 0.34
381 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (358 bp):
CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGAGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
TGATACCCCTACGTACTGTCAATCCTGCGGCCGCAACCCTCGATCCGGTCCGATCTTAGACTAGG
AATGAACTCCATATGCTTAAACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGA
GTGCGGGCACTTAGCCATGAGACCGGAGAGACAGAATGTGCAAGCCGAGGATCAACCCGGTCCAC
CTCTCCGTGCTGCTGATCCTGCTGTTGGTCCTA
Found at i:15274239 original size:26 final size:26
Alignment explanation
Indices: 15274203--15274255 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15274193 CTGATCTGAT
15274203 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
15274229 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
15274255 C
1 C
15274256 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:15274581 original size:26 final size:26
Alignment explanation
Indices: 15274545--15274597 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15274535 CTGGTCTGAT
* *
15274545 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15274571 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15274597 C
1 C
15274598 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15275651 original size:158 final size:156
Alignment explanation
Indices: 15275296--15275746 Score: 478
Period size: 158 Copynumber: 2.8 Consensus size: 156
15275286 CTCCGTATGC
* * *
15275296 TTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCG
* * * *
15275361 AGTCGGAAAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCT
65 A-TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC-CTACGTGCTGCCGATCCT
* * * *
15275426 GCTGCCACAACCCTCGGTCTGGCTAGGGC
128 GCTACCACAACCCTCGATCTGGCTAGAGA
* * * * *
15275455 TTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGTGAGCGCTCGGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG-C
* * *
15275520 GATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGTCCGATCCCCCCTACGTGCTACCGATCCTG
64 GATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTG
* * *
15275585 CTACCTCAACCCTCGATCTGATCT-GATA
129 CTACCACAACCCTCGATCTG-GCTAGAGA
* * * * * *
15275613 TTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGCGCGGGTGCTCAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * *
15275677 CGAT-GGAGAGGCAGAATGCGTAAGCC-AGGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGATC
63 CGATCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGAT-CCCCCCTACGTGCTGCCGATC
15275740 CTGCTAC
126 CTGCTAC
15275747 TGGTCCTGCT
Statistics
Matches: 243, Mismatches: 42, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
156 1 0.00
157 31 0.13
158 113 0.47
159 96 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGA
TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCT
ACCACAACCCTCGATCTGGCTAGAGA
Found at i:15275824 original size:26 final size:26
Alignment explanation
Indices: 15275782--15275834 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15275772 CCGGTCCGAT
15275782 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
15275808 CTTAGACAT-GGATTGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
15275834 C
1 C
15275835 GTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:15276008 original size:26 final size:26
Alignment explanation
Indices: 15275969--15276019 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15275959 GATCTGATCC
15275969 TAGACTGGGAATGAACTCCATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
15275995 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
15276020 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:15276729 original size:26 final size:26
Alignment explanation
Indices: 15276691--15276741 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15276681 GGCTCAAACT
15276691 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
15276717 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
15276742 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15277230 original size:159 final size:159
Alignment explanation
Indices: 15276717--15277344 Score: 602
Period size: 159 Copynumber: 4.0 Consensus size: 159
15276707 ACTCCGTATA
* * **
15276717 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACAAGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * * *
15276782 CGGCCAAAGAGGTAGAATGCACAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAGTCC
66 CGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCC
* * * * *
15276847 CGCTACCGTAACCTTCGGTCCGACTGGGG
131 CACTGCCGCAACCCTCGGTCCGGCTGGGG
* * * *
15276876 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
* * * * *
15276941 CGGTCGGAGAGACAGAATGTGCAAGCC-GAGGACCGGCAT-GATCCCCC-CTGCGTGCTGTCGAT
66 CGGTCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGGC-TCGATCCCCCTCTGCGTGCTGTCGGT
** * * * ****
15277003 CTTACTGCCGCAACCCTCAGTCTGGTTCAAT
129 CCCACTGCCGCAACCCTCGGTCCGGCTGGGG
* * ** ** *
15277034 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCAAAAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * * *
15277098 TCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTC
*
15277163 CCACTGCCACAACCCTCGGTCCGGCTGGGG
130 CCACTGCCGCAACCCTCGGTCCGGCTGGGG
* * **
15277193 CTTAGACATTGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * *
15277258 CGGTAAGAGAGGTAGAATGCGCAAGCCAGGGATC-GATCTGGT-CCCCTCTGCGTACTATTGATC
66 CGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTC-GATCCCCCTCTGCGTGCTGTCGGTC
* * *
15277321 CTACTGGCGCAACCGTCGGTCCGG
130 CCACTGCCGCAACCCTCGGTCCGG
15277345 TCCAATCTTA
Statistics
Matches: 374, Mismatches: 87, Indels: 17
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 162 0.43
159 209 0.56
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
CGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCC
CACTGCCGCAACCCTCGGTCCGGCTGGGG
Found at i:15277334 original size:317 final size:316
Alignment explanation
Indices: 15276717--15277377 Score: 768
Period size: 317 Copynumber: 2.1 Consensus size: 316
15276707 ACTCCGTATA
* * **
15276717 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAACAAGCGTGCGGGCGCTCAAT
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCAAAAAACAAGCGTGCGGGCGCTCAAT
* * * *
15276782 CGGCCAAAGAGGTAGAATGCACAAGTCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAGTCC
65 CGACCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCC
* ** * * *
15276847 CGCTACCGTAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAA
130 CACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAA
** *
15276912 CCCACGAAACAAGCGTACGGGCACTCAGCCGGTCGGAGAGACAGAATGTGCAAGCCGAGGACCGG
195 CCCACGAAACAAGCGTACGGGCACTCAGCCGGTAAGAGAGACAGAATGCGCAAGCCGAGGACCGG
* * * * *
15276977 CATGATCCCCCCTGCGTGCTGTCGATCTTACTGCCGCAACCCTCAGTCTGGTTCAAT
260 CATGATCCCCCCTGCGTACTATCGATCCTACTGCCGCAACCCTCAGTCCGGTCCAAT
* ** * *
15277034 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAAAAAATGAGCGTGCGGGCGCTGAGT
1 CTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCAAAAAACAAGCGTGCGGGCGCTCAAT
* ** * * * * * *
15277099 CGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCC
65 CGACCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCC
* * *
15277164 CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCAAAGCCAA
130 CACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAA
* ** * * ** *
15277229 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTAAGAGAGGTAGAATGCGCAAGCC-AGGGATCG
195 CCCACGAAACAAGCGTACGGGCACTCAGCCGGTAAGAGAGACAGAATGCGCAAGCCGA-GGACCG
* * * * * * *
15277293 ATC-TGGTCCCCTCTGCGTACTATTGATCCTACTGGCGCAACCGTCGGTCCGGTCCAAT
259 -GCATGATCCCCCCTGCGTACTATCGATCCTACTGCCGCAACCCTCAGTCCGGTCCAAT
*
15277351 CTTAGACTAGGAATGAACTGCATATGC
1 CTTAGACT-GGAATGAACTCCATATGC
15277378 TTAGACTTGG
Statistics
Matches: 285, Mismatches: 56, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
316 2 0.01
317 282 0.99
318 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCAAAAAACAAGCGTGCGGGCGCTCAATC
GACCAAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCC
ACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAAC
CCACGAAACAAGCGTACGGGCACTCAGCCGGTAAGAGAGACAGAATGCGCAAGCCGAGGACCGGC
ATGATCCCCCCTGCGTACTATCGATCCTACTGCCGCAACCCTCAGTCCGGTCCAAT
Found at i:15277402 original size:26 final size:26
Alignment explanation
Indices: 15277351--15277403 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15277341 CCGGTCCAAT
*
15277351 CTTAGACTAGGAATGAACTGCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
15277377 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15277403 C
1 C
15277404 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15278964 original size:159 final size:158
Alignment explanation
Indices: 15278641--15279737 Score: 846
Period size: 159 Copynumber: 6.9 Consensus size: 158
15278631 AACTCCTTAA
* * * * * * *** *
15278641 GCTTACACTTGGAATGAAGTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAG
* * * * * * ** * *
15278706 CCGACCGGAGAGGTAGAATGTGTAAGCCGGGGATCGGCCCAGTGCCCCCCTGTGTGCTATCGATC
66 CCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGT-CCCCCTTACGTGCTGTCGGTC
** * * * * * *
15278771 CTACGGCCGCAACCGTC-AGTCCGATCT-GA
130 CCGCTGCCACAACCCTCGA-TCTG-GCTGGG
* * * * * * *
15278800 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGA
* * * * * *
15278864 GCCGATCGGAGAGGCATAATTTGCAAGTCGGGGGTCGGCCCGGTCCCCCTCTGCATGCTATCGGT
65 GCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCT-TACGTGCTGTCGGT
* *
15278929 CCCGCTACCACAATCCTCGATCTGGCTGGG
129 CCCGCTGCCACAACCCTCGATCTGGCTGGG
* ** * ** *
15278959 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAG
* * * * * * * **
15279024 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCACCTTACGTGCTGTCAATCC
66 CCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGGTCC
* * * *
15279089 TGCTGTCACAACCCTCGATCTGATCT-GA
131 CGCTGCCACAACCCTCGATCTG-GCTGGG
* * ** * * *
15279117 TCTTAGA-TTGGGAATGAACTCTTTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGA
* * * *
15279181 GCCGATCGGAGAGGCATAATGTGCAAGCCGAGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGGT
65 GCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCT-TACGTGCTGTCGGT
* * * * *
15279246 CCCGTTGCCACAACCCTTGGTCCGACTGGG
129 CCCGCTGCCACAACCCTCGATCTGGCTGGG
* * * *
15279276 GCTTAGACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAG
* ** * * * * * * ** *
15279341 TCGGCCAGAGAGGCATAATGCGCAAGTCGAGGACCGACCCGGTCCCCGCTTACGTGCCATCGATC
66 CCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCC-CTTACGTGCTGTCGGTC
* * ** * * *
15279406 CTGCTGCCACAACCTTCGA-CCCGATCCGA
130 CCGCTGCCACAACCCTCGATCTGGCT-GGG
* * * * * *
15279435 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGA
* * *
15279499 GCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCTCGGTCCCCTTTACGTGCTGTCGGTC
65 GCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGGTC
* * *
15279564 CCACTGCCACAACCCTTGGTCTGGCTGGG
130 CCGCTGCCACAACCCTCGATCTGGCTGGG
* * ** *
15279593 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAG
* * * * * * * *
15279658 TC-AGTTGGAGAGGCAGAATGCGTAAGCCGGGGA-CTGGCCCGAT-CCCCTTACGTGCTATCGAT
66 CCGA-TCGGAGAGGCATAATGTGCAAGCCGGGGATC-GGCCCGGTCCCCCTTACGTGCTGTCGGT
* *
15279720 CCTGCTGCCGCAACCCTC
129 CCCGCTGCCACAACCCTC
15279738 TGTCCGATCT
Statistics
Matches: 732, Mismatches: 189, Indels: 36
0.76 0.20 0.04
Matches are distributed among these distances:
157 32 0.04
158 247 0.34
159 448 0.61
160 5 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAG
CCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGGTCC
CGCTGCCACAACCCTCGATCTGGCTGGG
Found at i:15279228 original size:317 final size:316
Alignment explanation
Indices: 15278641--15279777 Score: 1372
Period size: 317 Copynumber: 3.6 Consensus size: 316
15278631 AACTCCTTAA
* * * * * * * *
15278641 GCTTACACTTGGAATGAAGTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * * * **
15278706 CCGACCGGAGAGGTAGAATGTGTAAGCCGGGGATCGGCCCAGTGCCCCCCTGTGTGCTATCGATC
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTTACGTGCTATCGATC
* * * * * *
15278771 CTACGGCCGCAACCGTC-AGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTC
130 CTGCTGCCACAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * * *
15278835 AACCCACGAAACGAGCGTTCGGGCGTTGAGCCGATCGGAGAGGCATAATTTGCAAGTCGGGGGTC
194 AACCCACGAAACGAGCGTGCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATC
* * * * * * *
15278900 GGCCCGGTCCCCCTCTGCATGCTATCGGTCCCGCTACCACAATCCTCGATCTGGCTGGG
259 -GCCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
* **
15278959 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATAAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * *
15279024 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCACCTTACGTGCTGTCAATCC
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTACGTGCTATCGATCC
* * * *
15279089 TGCTGTCACAACCCTCGATCTGATCTGATCTTAGATTGGGAATGAACTCTTTATGCCTAAGTCAA
131 TGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * *
15279154 CCCACAAAACGAGCGTGCAGGTGCTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGAGGATCAG
196 CCCACGAAACGAGCGTGCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATC-G
* * *
15279219 CCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACCCTTGGTCCGACTGGG
260 CCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
* * **
15279276 GCTTAGACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* ** * * * * * * *
15279341 TCGGCC-AGAGAGGCATAATGCGCAAGTCGAGGACCGACCCGGTCCCCGCTTACGTGCCATCGAT
66 CCAACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCC-CTTACGTGCTATCGAT
* * *
15279405 CCTGCTGCCACAACCTTCGACCCGATCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGT
129 CCTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGT
* *
15279469 CAACCCACGAAATGAGCGTGCGGGTGTTGAGCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGAT
193 CAACCCACGAAACGAGCGTGCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGAT
* * * *
15279534 CGGCTCGGT-CCCCTTTACGTGCTGTCGGTCCCACTGCCACAACCCTTGGTCTGGCTGGG
258 CGCCT-GGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
*
15279593 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* *** * *
15279658 TCAGTTGGAGAGGCAGAATGCGTAAGCCGGGGA-CTGGCCC-GAT-CCCCTTACGTGCTATCGAT
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCAG-TCCCCCTTACGTGCTATCGAT
* *
15279720 CCTGCTGCCGCAACCCTCTG-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
129 CCTGCTGCCACAACCCTC-GATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGC
15279778 TTAGATGGGG
Statistics
Matches: 699, Mismatches: 110, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
315 65 0.09
316 7 0.01
317 403 0.58
318 224 0.32
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTACGTGCTATCGATCC
TGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGTGTTGAGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGC
CTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
Found at i:15279801 original size:25 final size:26
Alignment explanation
Indices: 15279751--15279802 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
15279741 CCGATCTGAT
*
15279751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15279777 CTTAGA-TGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
15279802 C
1 C
15279803 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15280776 original size:157 final size:157
Alignment explanation
Indices: 15280424--15280788 Score: 394
Period size: 157 Copynumber: 2.3 Consensus size: 157
15280414 TGTGCTATTG
* * * * * **
15280424 ATCCTGCTGTCGCAACCCTTGGTTCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
1 ATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCCTATGCCTAAG
* * * * * ** * *
15280489 TCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCAGTCGGGGAGGCATAATATGCAAGCCAGGGA
65 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAAAATACGCAAGCCAGGGA
* *
15280554 TCGGCTCGGTCCCCCTCTGCGTGCTGTC
130 TCGGCTCGGTCCCCCTCTACGAGCTGTC
* * * ** *
15280582 AGTCCCGCTGCCATAACCCTCGGTCTGG-CTGGGCTTAGACATAGAATGAACTCCCT-TGCCTAA
1 A-TCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGAC-TGGAATGAACTCCCTATGCCTAA
* * ** * *
15280645 GCCAACCCACGAAACGGGCGTGCGGGCTCTCAGCTGGCCGGAAAGGCAAAATGCGCAAGCCGGGG
64 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAAAATACGCAAGCCAGGG
15280710 ATCGGCTCGGTCCCCC-CTACGAGCTGTC
129 ATCGGCTCGGTCCCCCTCTACGAGCTGTC
15280738 TATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAA
1 -ATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGAC-TGGAATGAA
15280789 ATTTGTATGC
Statistics
Matches: 166, Mismatches: 37, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
156 33 0.20
157 92 0.55
158 22 0.13
159 19 0.11
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (157 bp):
ATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCAAAATACGCAAGCCAGGGAT
CGGCTCGGTCCCCCTCTACGAGCTGTC
Found at i:15280813 original size:26 final size:26
Alignment explanation
Indices: 15280772--15280824 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15280762 CCGGTCTGAT
* *
15280772 CTTAGACTTGGAATGAAATTTGTATG
1 CTTAGACTAGGAATGAAATCTGTATG
* *
15280798 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAAATCTGTATG
15280824 C
1 C
15280825 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCTGTATG
Found at i:15282047 original size:26 final size:26
Alignment explanation
Indices: 15281996--15282048 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15281986 TCGATCTGAT
*
15281996 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
15282022 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15282048 C
1 C
15282049 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15282182 original size:12 final size:12
Alignment explanation
Indices: 15282141--15282174 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15282131 CCCTCTGCGT
*
15282141 GCTGGCGATCTC
1 GCTGCCGATCTC
15282153 GCTGCCGATCTC
1 GCTGCCGATCTC
*
15282165 GTTGCCGATC
1 GCTGCCGATC
15282175 CTCCTGCCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.35, G:0.29, T:0.26
Consensus pattern (12 bp):
GCTGCCGATCTC
Found at i:15283304 original size:159 final size:156
Alignment explanation
Indices: 15282910--15283370 Score: 401
Period size: 159 Copynumber: 2.9 Consensus size: 156
15282900 AACTCCATAT
* *
15282910 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
15282975 CCAGCTGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCTGATCCCCCCTACGTGCTGTCGATCC
66 -CAACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* *
15283040 TACTGCCGCAACCCACAGTCTGGTCCAA
130 TACTGCCACAACCCACAGTCTAG-CCAA
* * * * ** ** *
15283068 TCTTGGA-TTGGGAATGAACTTCGTATGTAC-AAGTTAACCCACGAAACGAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTTCGTATG-CCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * ** * * * * * * * *
15283131 AGCTGATCAAAGAGGCATAATGCGTAAGCCAGGGATTGGCCCGGTCCCCTCTTGCGTGCTGTCGG
64 AGC-AACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCC-CCTACGTGCTGTCGA
*** *
15283196 TCC--CGTCGCCACAACCCTTGGTCTAG-CAGGG
127 TCCTAC-T-GCCACAACCCACAGTCTAGCCA--A
* *
15283227 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * ** *
15283292 TCAACCGGAGAGGCAGAATCCGCAAGCCGGGGATCGACCTGATCCCCCCTGTGTGCTGTCGATCT
66 -CAACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* *
15283357 TACTACCGCAACCC
130 TACTGCCACAACCC
15283371 TCGGTCCGGT
Statistics
Matches: 228, Mismatches: 62, Indels: 26
0.72 0.20 0.08
Matches are distributed among these distances:
157 5 0.02
158 106 0.46
159 114 0.50
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CAACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCT
ACTGCCACAACCCACAGTCTAGCCAA
Found at i:15283416 original size:26 final size:26
Alignment explanation
Indices: 15283387--15283438 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15283377 CGGTCTGATT
15283387 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
*
15283413 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
15283439 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:15283622 original size:26 final size:26
Alignment explanation
Indices: 15283582--15283634 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15283572 CCAGTCCGAT
*
15283582 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15283608 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
15283634 C
1 C
15283635 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15283697 original size:196 final size:196
Alignment explanation
Indices: 15283363--15283738 Score: 526
Period size: 196 Copynumber: 1.9 Consensus size: 196
15283353 ATCTTACTAC
* * * * * *
15283363 CGCAACCCTCGGTCCGGTCTGATTTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGA
1 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGA
* * * * *
15283428 ACTCTGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGAGGTAGA
66 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACCAGCCAGAGAGGTAGA
* * * *
15283493 ATGCGTAAGCC-AGGGATCGG-CTCGGTCCCCCCTATGTGCTATCGATCCTACTGCTGGTCCTGC
131 ACGCGTAAGCCGA-GGATAGGCCT-GATCCCCCCTATGTACTATCGATCCTACTGCTGGTCCTGC
15283556 TGT
194 TGT
15283559 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGAAATGAACT-TCGTATGCTTAGACAT-GGAAT
1 CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGAAATGAACTCT-GTATGCTTAGAC-TGGGAAT
* *
15283622 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACCGGCCAGAGGGGTA
64 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACCAGCCAGAGAGGTA
*
15283687 GAACGCGTAAGCCGAGGATAGGCCTGATCCCCCCTATGTACTGTCGATCCTA
129 GAACGCGTAAGCCGAGGATAGGCCTGATCCCCCCTATGTACTATCGATCCTA
15283739 TTGTCGCAAC
Statistics
Matches: 158, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
195 1 0.01
196 153 0.97
197 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (196 bp):
CGCAACCCTCAGTCCAGTCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACCAGCCAGAGAGGTAGA
ACGCGTAAGCCGAGGATAGGCCTGATCCCCCCTATGTACTATCGATCCTACTGCTGGTCCTGCTG
T
Found at i:15284829 original size:26 final size:26
Alignment explanation
Indices: 15284791--15284843 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15284781 GGCTTAAACT
*
15284791 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
15284817 CTTAGAC-GTGGAAAGAATTTCGTATG
1 CTTAGACTG-GGAAAGAACTCCGTATG
15284843 C
1 C
15284844 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15285320 original size:26 final size:26
Alignment explanation
Indices: 15285291--15285369 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15285281 CCGATCTGAT
15285291 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15285317 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15285343 CTTAGACT-AGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
15285369 C
1 C
15285370 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 2 0.04
26 47 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15285576 original size:26 final size:26
Alignment explanation
Indices: 15285525--15285577 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15285515 CCGATCTGAT
*
15285525 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15285551 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15285577 C
1 C
15285578 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15285945 original size:159 final size:159
Alignment explanation
Indices: 15285550--15285979 Score: 393
Period size: 159 Copynumber: 2.7 Consensus size: 159
15285540 AACTCCGTAT
* * *
15285550 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * **
15285615 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGTATCGGCCCAGTCCCCCCCTGTGTGTTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGTACCGACCCAGTCCCCCCCTGTGTACTGTCGATC
** * *
15285680 TTGCTGCCGTAACCCTCAGTCCGATCTGA
131 CCGCTGACGCAACCCTCAGTCCGATCTGA
* * * * * * *
15285709 TCTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAATCCATGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
*** * ** ** * *
15285773 GCCAACCGAAGAGGCTTAATGCGCAAGTCGGGGT-CCGACCC-GATCCCTCTCTGTGTACTGTCG
65 GCCGGTCGGAGAGGCAGAATGCGCAAG-CCAGGTACCGACCCAG-TCCCCCCCTGTGTACTGTCG
* ** *
15285836 GTCCCGCT-ACGACAACCCTTGGTCCGA-CTGGG
128 ATCCCGCTGACG-CAACCCTCAGTCCGATCT-GA
* * * * *
15285868 GCTTAGACATGGAATTAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * ** * *
15285933 CCGGTCGGAGAGGCAGAACGTGCAAGCTGGGGATCGACCCAGTCCCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGTACCGACCCAGTCCCC
15285980 TCTACATGCT
Statistics
Matches: 207, Mismatches: 56, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
158 10 0.05
159 191 0.92
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGTACCGACCCAGTCCCCCCCTGTGTACTGTCGATC
CCGCTGACGCAACCCTCAGTCCGATCTGA
Found at i:15286063 original size:26 final size:26
Alignment explanation
Indices: 15286027--15286079 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15286017 CCGGTCTGAT
*
15286027 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15286053 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15286079 C
1 C
15286080 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15287101 original size:157 final size:156
Alignment explanation
Indices: 15286773--15287457 Score: 459
Period size: 157 Copynumber: 4.3 Consensus size: 156
15286763 GAACTCCTAT
** ** * * *
15286773 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTGAG
* ** * * * * * * * * **
15286838 TCGATCGGAGAGGCAGAATGTGCAAGCCGGGAATTGGCCCGATCCCTCCTGCATGCT-CTCAATC
66 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCTACGTGCTGCT-GGTC
* * * ** **
15286902 TTGCTGTCGCAACCCTC-AGTCCGGTCTG
129 CTGCTGCCACAACCCTCGA-TCCAATGGG
** * * * * * *
15286930 ATTTTGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACAAAACGGGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTGA
* * * * * * *
15286994 ACCGGCCAAAGAGGCATAATACGCAGGCCAGGGATTGGCCCTGTCCCCCTACGTGCTGCTGGTCC
65 GCCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTACGTGCTGCTGGTCC
*
15287059 TGCTGCCACAACCCTCGATTCAACTGGG
130 TGCTGCCACAACCCTCGATCCAA-TGGG
* * *
15287087 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTGAG
* * * * *
15287152 CTGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCC-CCGGTG-TGCTGTCGA
66 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTAC-GTGCTGCTG--G-
* * * *
15287215 TCCTGCTACCGCAACCCTCGATCCAATCCGA
127 TCCTGCTGCCACAACCCTCGATCCAAT-GGG
* * * ** ** * * *
15287246 TCATAGAC-TGGGAGTGAACTCTGTATGCCTAAGTTAACCCACAAAACGAACGTTCGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTGA
** * * * ** * * * *
15287310 GCCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGGCTAGGTCCCCCTCTACATGCTACCGAT
65 GCCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCC-CTACGTGCTGCTGGT
*
15287375 -CTCGCTGCCACAACCCTC-AGTCCGATTGGG
128 CCT-GCTGCCACAACCCTCGA-TCC-AATGGG
* *
15287405 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGT
15287458 GCAGGCTCCG
Statistics
Matches: 399, Mismatches: 110, Indels: 36
0.73 0.20 0.07
Matches are distributed among these distances:
156 33 0.08
157 179 0.45
158 7 0.02
159 166 0.42
160 7 0.02
161 3 0.01
162 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTGAG
CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTACGTGCTGCTGGTCCT
GCTGCCACAACCCTCGATCCAATGGG
Found at i:15287273 original size:159 final size:158
Alignment explanation
Indices: 15286774--15287459 Score: 444
Period size: 159 Copynumber: 4.3 Consensus size: 158
15286764 AACTCCTATG
* ** *
15286774 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
** * * * * * * ** * *
15286838 -TCGATCGGAGAGGCAGAATGTGCAAGCCGGGAATTGGCCCGATCCCTCCTGCATGCTCTCAATC
65 CT-GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCGTGTGCTGTCGATC
* * ** *
15286902 TTGCTGTCGCAACCCTC-AGTCCGGTCTGAT
129 CTGCTGCCGCAACCCTCGA-TCCAATCCGAT
* * * * * * * *
15286932 -TTTGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACAAAACGGGCGTACGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
* * * * * * * *
15286996 CGGCCAAAGAGGCATAATACGCAGGCCAGGGATTGGCCCTGTCCCCCTACGTGCTGCTG--G-TC
66 TGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-CCGTG-TGCTGTCGATC
* * * **
15287058 CTGCTGCCACAACCCTCGATTCAA-CTGGGG
129 CTGCTGCCGCAACCCTCGATCCAATC-CGAT
* *
15287088 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* **
15287152 CTGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCCGGTGTGCTGTCGATC
65 CTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCC-GTGTGCTGTCGATC
*
15287217 CTGCTACCGCAACCCTCGATCCAATCCGAT
129 CTGCTGCCGCAACCCTCGATCCAATCCGAT
* * * ** * * * *
15287247 CATAGACTGGGAGTGAACTCTGTATGCCTAAGTTAACCCACAAAACGAACGTTCGGGCCCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
* ** * * * * * ** * * **
15287312 CGATCGGAGAGGCATAATGCACAAGCTGGGGATCGGCTAGGTCCCCCTC-TACATGCTACCGAT-
66 TGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCGT--GTGCTGTCGATC
* * ** **
15287375 CTCGCTGCCACAACCCTC-AGTCCGATTGGGG
129 CT-GCTGCCGCAACCCTCGA-TCCAATCCGAT
* * *
15287406 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGC
15287460 AGGCTCCGAT
Statistics
Matches: 398, Mismatches: 111, Indels: 37
0.73 0.20 0.07
Matches are distributed among these distances:
155 1 0.00
156 26 0.07
157 176 0.44
158 7 0.02
159 186 0.47
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
TGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCGTGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCCAATCCGAT
Found at i:15287557 original size:26 final size:26
Alignment explanation
Indices: 15287521--15287573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15287511 TCTGGTCTGA
*
15287521 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15287547 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15287573 C
1 C
15287574 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15287917 original size:26 final size:26
Alignment explanation
Indices: 15287888--15287940 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15287878 CCGATCTGAT
15287888 CTTAGAC-TGAGAATGAACTCTGCATG
1 CTTAGACATG-GAATGAACTCTGCATG
* *
15287914 CTTAGACATGGATTGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGCATG
15287940 C
1 C
15287941 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGCATG
Found at i:15288215 original size:159 final size:158
Alignment explanation
Indices: 15287913--15288416 Score: 427
Period size: 159 Copynumber: 3.2 Consensus size: 158
15287903 AACTCTGCAT
* * * *
15287913 GCTTAGACATGGATTGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGACGCTCAA
* * *
15287978 CCGGTCGGAGAGGCAGAATGCGTAAATCGGGGGATCGACTCGATCTCCCCTACGTGCTGTTGATC
65 CCGGTCGGAGAGGCAGAATGAGTAAATCGGGGGATCGACTCGATCCCCCCTACGTGCTGTCGATC
* * *
15288043 CTACTACCGCAACCCTTGGTCC-ATTCT-GA
130 CCACTACCACAACCCTCGGTCCGA--CTGGA
* * * *
15288072 TCTTAGA-ATGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGATGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGACGCTCA
* * * * *
15288136 GCCGGTCGGAGAGGCATAATGAG-AAAGT-TGGGGATC-AGTTC-AGTCCCCCTCTGCGTGCTGT
64 ACCGGTCGGAGAGGCAGAATGAGTAAA-TCGGGGGATCGA-CTCGA-TCCCCC-CTACGTGCTGT
* *
15288197 CGATCCCACTGCCACAACCCTCGGTCCGACTGGG
125 CGATCCCACTACCACAACCCTCGGTCCGACTGGA
* * * * * *
15288231 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGACGCTCAA
* * * * * * * *
15288296 CCGATCGGAGTGGCAGAATGCGTAAATC-AGGGATCGAC-CTGGTCCCCCCTGCGTGTTGCCGAT
65 CCGGTCGGAGAGGCAGAATGAGTAAATCGGGGGATCGACTC-GATCCCCCCTACGTGCTGTCGAT
** * ** *
15288359 CCTGCTACCGCAACCCTTAGTCCGGTCT-GA
129 CCCACTACCACAACCCTCGGTCC-GACTGGA
* *
15288389 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15288417 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 51, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
157 2 0.01
158 79 0.28
159 190 0.68
160 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGACGCTCAAC
CGGTCGGAGAGGCAGAATGAGTAAATCGGGGGATCGACTCGATCCCCCCTACGTGCTGTCGATCC
CACTACCACAACCCTCGGTCCGACTGGA
Found at i:15288431 original size:26 final size:26
Alignment explanation
Indices: 15288390--15288442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15288380 CCGGTCTGAT
15288390 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
15288416 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15288442 C
1 C
15288443 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15289160 original size:26 final size:26
Alignment explanation
Indices: 15289122--15289174 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15289112 GGCTTAAAAT
15289122 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
15289148 CTTAGACAT-GGAATTAATTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
15289174 C
1 C
15289175 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15289904 original size:159 final size:158
Alignment explanation
Indices: 15289647--15289985 Score: 367
Period size: 159 Copynumber: 2.1 Consensus size: 158
15289637 AACTCCATTT
* * ** * * *
15289647 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACTAGGAATGAACTCCCTATGCCTAACCCAACCCACGAAATGAGCGTGCAGGCACTCAG
* * *
15289712 CCGGTCGGAGAGGCATAATGCACAAGCCAGGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGATC
66 CCGATCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCCCCC-CTGCGTGCTGCCGATC
15289777 CCGCTACCACAACCCTCGGTCCATCTGGG
130 CCGCTACCACAACCCTCGGTCCATCTGGG
* * *
15289806 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAACCCAACCCATGAAATGGGCGTGCAGGCACTGA
1 GCTTAGACTA-GGAATGAACTCCCTATGCCTAACCCAACCCACGAAATGAGCGTGCAGGCACTCA
** * * * * * * *
15289870 GCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCTTTCGTGCTGCTGATC
65 GCCGATCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCCCCCCTGCGTGCTGCCGATC
* ** * * *
15289935 CTGCTGTCGCAACCCTCGGTCCGATC-CGA
130 CCGCTACCACAACCCTCGGTCC-ATCTGGG
* *
15289964 TCTTAGACTGGGAATGAACTCC
1 GCTTAGACTAGGAATGAACTCC
15289986 ATTTGCTTAG
Statistics
Matches: 147, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
158 52 0.35
159 95 0.65
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCCTATGCCTAACCCAACCCACGAAATGAGCGTGCAGGCACTCAG
CCGATCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCCCCCCTGCGTGCTGCCGATCC
CGCTACCACAACCCTCGGTCCATCTGGG
Found at i:15290065 original size:343 final size:342
Alignment explanation
Indices: 15289306--15291123 Score: 1862
Period size: 343 Copynumber: 5.3 Consensus size: 342
15289296 CTGATCGGAT
* * * *
15289306 CTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCA-CTGA
1 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGG-AGCTCA
* * * * * * * * *
15289369 GCCGGCCGAAGAGGCATAATGTGCAAGTCGGGGA-TCGACCCGGTCCCCCTCTGCATGCTGCGGG
64 GCCGGTCGGAGAGGCATAATGCGCAAG-CCGGGATTAG-CCCGATCCCCCGCTGCGTGCTGCCGG
* * * * * *
15289433 TCCCACAGCCACAACCCTCAGTCTAGCTTGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGC
127 TCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * *
15289498 CAACCCACGAAATGGGCGTGCGGGCACTGAGTCAATCGAAAAGGCAGAATGCGTAAGCCAGGGAT
192 CAACCCATGAAATGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGAT
* * * *
15289563 CGGCCCGGT-CCCCCTTCGTGCTG-TCGATCCTGCTGTCGCAACCTTCAGTCCGATCCGATCTTA
257 CGGCTCGGTCCCCCCTGCGTGCTGCT-GATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTA
* * *
15289626 GACTGCGAATGAACTCCATTTG
321 GACTGGGAATGAACTCCGTATG
* * * *
15289648 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAGC
* *
15289713 CGGTCGGAGAGGCATAATGCACAAGCCAGGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGATCC
66 CGGTCGGAGAGGCATAATGCGCAAGCC-GGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGGTCC
* * *
15289778 CGCTACCACAACCCTCGGTCCATCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCCAA
130 CGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
15289843 CCCATGAAATGGGCGTGCAGGCACTGAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATTGG
195 CCCATGAAATGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG
* *
15289908 CTCGGTCCCCCTTTCGTGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACT
260 CTCGGTCCCCCCTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACT
* *
15289973 GGGAATGAACTCCATTTG
325 GGGAATGAACTCCGTATG
* *
15289991 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGAGCTCAAC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAGC
* ** * * * *
15290056 CGATCGGAGAGGCATAATGCATAAGTCGGGGATTAGCCCAATCCCCCGTTGCGTGTTGCCGGTCC
66 CGGTCGGAGAGGCATAATGCGCAAG-CCGGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGGTCC
15290121 CGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CGCTGCCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * ** ** * *
15290185 ACCCATGAAATGGGTGTACAGGCGCTCAGTCGGCCGGAGAGGCAGAACACGTAAGTCAGGGATCG
194 ACCCATGAAATGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
* * * * * * **
15290250 ACTTGGTCCCCCCTACGTGCT-ATCGATCCTGCTG-CTGCAACCCTCGATCCGGTTTGATCTTAG
259 GCTCGGTCCCCCCTGCGTGCTGCT-GATCCTGCTGTC-GCAACCCTCGGTCCGATCCGATCTTAG
*
15290313 ACTGGGAATGAACTCCGGATG
322 ACTGGGAATGAACTCCGTATG
* * *
15290334 CTTAGACT-GAGGAAGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTGGGTGCTCAG
1 CTTAGACTAG-GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAG
* * * * * * * *
15290398 TCGATCAGAGAGGCACAATACGCAAGCCGAGGATCAGCTCCG-TCCCCCACTGCGTGCTGTCGGT
65 CCGGTCGGAGAGGCATAATGCGCAAGCCG-GGATTAGC-CCGATCCCCCGCTGCGTGCTGCCGGT
* * * * *
15290462 CCCACTGCCACAACCCTCGATCCAGCTGGGACGTAGACATGGAATGAACTCCCTATGCCTAAGCT
128 CCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
** * * * * *
15290527 AACCCACAAAATGGGTGTGCGGGCGCTCAG-CCAGTCGGAGAGGTAGAATGCGCAAACCGGGGAT
193 AACCCATGAAATGGGCGTGCGGGCGCTCAGTCGA-TCGGAGAGGCAGAATGCGTAAGCCGGGGAT
* * * * * * * *
15290591 CAGCCCTGTCCCCCCTGCGTGCTACTGATCCTGCTATTGCAACCCTCAGTCCGGTCCGATCTTAG
257 CGGCTCGGTCCCCCCTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAG
*
15290656 ACTGGGAATGAACTTCGTATG
322 ACTGGGAATGAACTCCGTATG
* * * ** * *
15290677 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCATCCCATAAAACGAGCGTGTGGGTGCTCAAC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAGC
* * * * * * * * *
15290742 CGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCGCTGTGTGCTGTCAGTCT
66 CGGTCGGAGAGGCATAATGCGCAAGCCG-GGATTAGCCCGATCCCCCGCTGCGTGCTGCCGGTCC
* * *
15290807 CGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGTC-TCGGAATGAACTCCCTATGCCTAAGCCA
130 CGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
15290871 ACCCATGAAACGAGCGTACGGGCGCTCAGTCGGTTGGAGAGGCAAAATGCGTAAGCCGAGGATCG
194 ACCCATGAAATGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCG
* * *
15290936 GCTTGGTCCCCCCCTGCGTGCTGTTGATCCTACTGCCTGTCCTGCTGTCGCAACCCTCGGTCTGA
259 GCTCGGT-CCCCCCTGCGTGC---TG------CTG---ATCCTGCTGTCGCAACCCTCGGTCCGA
* * ** *
15291001 ACTGATCAAAGACTGAGAATGAACTCCGTATG
311 TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * ***
15291033 CTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTTTCAG
1 CTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAG
* * * *
15291097 TCGGCCGGAGAGGCAGAATGCACAAGC
65 CCGGTCGGAGAGGCATAATGCGCAAGC
15291124 TGCAGATAGG
Statistics
Matches: 1238, Mismatches: 203, Indels: 56
0.83 0.14 0.04
Matches are distributed among these distances:
341 1 0.00
342 231 0.19
343 860 0.69
344 21 0.02
347 1 0.00
353 3 0.00
356 121 0.10
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAGC
CGGTCGGAGAGGCATAATGCGCAAGCCGGGATTAGCCCGATCCCCCGCTGCGTGCTGCCGGTCCC
GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAATGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC
TCGGTCCCCCCTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:15290338 original size:26 final size:26
Alignment explanation
Indices: 15290308--15290360 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15290298 CCGGTTTGAT
15290308 CTTAGACTG-GGAATGAACTCCGGATG
1 CTTAGACTGAGGAA-GAACTCCGGATG
*
15290334 CTTAGACTGAGGAAGAACTCCGTATG
1 CTTAGACTGAGGAAGAACTCCGGATG
15290360 C
1 C
15290361 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGAGGAAGAACTCCGGATG
Found at i:15290687 original size:26 final size:26
Alignment explanation
Indices: 15290651--15290703 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15290641 CCGGTCCGAT
*
15290651 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15290677 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15290703 C
1 C
15290704 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15291537 original size:26 final size:26
Alignment explanation
Indices: 15291508--15291558 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15291498 CTGGTTCGAT
* *
15291508 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15291534 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15291559 ACGTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15291912 original size:344 final size:343
Alignment explanation
Indices: 15291322--15291955 Score: 856
Period size: 344 Copynumber: 1.8 Consensus size: 343
15291312 TGCCAGTCCT
* *
15291322 ACTGCCACAACCCTTGATCTGGCTGGGGCTTAGAGATGGAATGAACTCCCTACGCCTAAGCCAAC
1 ACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
* *** *
15291387 CCATGAAACGGGTGTCCGGGCGCTCAACCGACCGAAAAGGCAGAATGTGTAAGCTGGGGATCGGC
66 CCATGAAACGGGAGTCCGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAGCTAGGGATCGGC
* * * * * * *
15291452 CTAGTCCCCCCTACGTGCTACCGATCTTACTGCCCCAACCTTCGGTCTGGTTCGATCTTAGACTG
131 CTAGTCCCCCCTACGTGCTACCAATCCTACTGCCCCAACCCTCGATCTAGTCCAATCTTAGACTG
* * *
15291517 GGAATTAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATACGTAAGTCAACCCATAAAAACG
196 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCAT-AAAACG
** *
15291582 AGCGTGTGGGAGCTTAACCGGCCGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCAATCCCTC
260 AGCGTGCAGGAGCTTAACCGGCAGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCAATCCCTC
15291647 GTTGCATGCTGCCGATCTC
325 GTTGCATGCTGCCGATCTC
* * *
15291666 ACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTAC
1 ACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
* * * * * *
15291731 CCATGAAATGGGAGTGCGGGCGCTCAGCC-AGCCGGAGAGGCAGAATGCACAGGCTAGGGATCGG
66 CCATGAAACGGGAGTCCGGGCGCTCAACCGA-CCGAAAAGGCAGAATGCACAAGCTAGGGATCGG
* * * * ** * **
15291795 CCTGGTCCCCCCTACGTGCTGCCAATCCTGCTGTCGTAGCCCTCGATCTAGTCCAATCTTATTCT
130 CCTAGTCCCCCCTACGTGCTACCAATCCTACTGCCCCAACCCTCGATCTAGTCCAATCTTAGACT
* * * *
15291860 GGGAATGAACTCCGTATGCTTAGACTGGGGTTGAACTCTGTATGCCTAAGTCAACCCATGAAACG
195 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCATAAAACG
*
15291925 AGCGTGCAGGCGCTTAACCGGCAGGAGAGGC
260 AGCGTGCAGGAGCTTAACCGGCAGGAGAGGC
15291956 CAGTCGGATA
Statistics
Matches: 246, Mismatches: 43, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
343 33 0.13
344 213 0.87
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (343 bp):
ACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAAC
CCATGAAACGGGAGTCCGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAGCTAGGGATCGGC
CTAGTCCCCCCTACGTGCTACCAATCCTACTGCCCCAACCCTCGATCTAGTCCAATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCATAAAACGA
GCGTGCAGGAGCTTAACCGGCAGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCAATCCCTCG
TTGCATGCTGCCGATCTC
Found at i:15292259 original size:26 final size:28
Alignment explanation
Indices: 15292221--15292281 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 28
15292211 CCAGTTCGAT
15292221 CTTAGAC-TGGGAATAAACCCCGTAT-C
1 CTTAGACATGGGAATAAACCCCGTATGC
*
15292247 CTTAGACAT-GGAATAAACTCCGTATGC
1 CTTAGACATGGGAATAAACCCCGTATGC
*
15292274 CTAAGACA
1 CTTAGACA
15292282 ACCCTCAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 22 0.71
27 9 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (28 bp):
CTTAGACATGGGAATAAACCCCGTATGC
Found at i:15292773 original size:26 final size:26
Alignment explanation
Indices: 15292735--15292787 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15292725 CCGGTTCGAT
*
15292735 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15292761 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
15292787 C
1 C
15292788 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15293091 original size:158 final size:157
Alignment explanation
Indices: 15292760--15293141 Score: 403
Period size: 158 Copynumber: 2.4 Consensus size: 157
15292750 AACTCTGTAT
* * *
15292760 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCCATTAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGAC-TGGAATGAACTCCGCATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGCTCAG
*
15292825 CCGACTGAAGAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTCCCCCACTATGTGCTCTCAATC
64 CCGACTGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCACTATGTGCTCTCAATC
** * * *
15292890 TTGTTGCCACAACCCTCAGTCTAGCCAAA
129 CCGCTACCACAACCCTCAGTCCAGCCAAA
* * *
15292919 TCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGCATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15292984 CTG-GTCGGAGAGGCATAAT-TGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGTGTGCTGC-CAG
64 CCGACT-GAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCACTATGTGCT-CTCAA
* ****
15293046 TCCCGCTACCACAACCCTCGGTCCAGTGGGA
127 TCCCGCTACCACAACCCTCAGTCCAGCCAAA
* * *
15293077 GCTTAGACATGGAATGAATTCC-CTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGATCA
1 GCTTAGAC-TGGAATGAACTCCGC-ATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCA
15293141 G
63 G
15293142 TTGGCCGAAG
Statistics
Matches: 185, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 113 0.61
159 70 0.38
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGCATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GACTGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCACTATGTGCTCTCAATCCC
GCTACCACAACCCTCAGTCCAGCCAAA
Found at i:15293249 original size:158 final size:158
Alignment explanation
Indices: 15292761--15293254 Score: 344
Period size: 158 Copynumber: 3.1 Consensus size: 158
15292751 ACTCTGTATG
* * * * *
15292761 CTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCTAACCCATTAAACGAGCGTGCGGGCGTTCAG
1 CTTAGACTG-GGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGATCAG
* * * * * * * * * *** *
15292825 CCGACTGAAGAGGCA-GAATGCGCAAGTCGGGGATCGGTCTGGTCCCCCACTATGTGCT-CTCAA
65 CTGGCCGAAGAGGCATAAAT--GCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGC-CAG
** * * * * **
15292888 TCTTGTTGCCACAACCCTC-AGTCTAGCCAAAT
127 TCCCGCTACCACAACCCTCGA-TCCAGTCGGAT
* * *
15292920 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGATCAGC
* * * * * * **
15292985 TGGTCGGAGAGGCATAATTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGTGTGCTGCCAGTCCC
66 TGGCCGAAGAGGCATAAATGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCAGTCCC
* * *
15293050 GCTACCACAACCCTCGGTCCAGTGGGAG
131 GCTACCACAACCCTCGATCCAGTCGGAT
* * *
15293078 CTTAGACAT-GGAATGAATTCC-CTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGATCA
1 CTTAGAC-TGGGAATGAACTCCGC-ATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGATCA
*
15293141 GTTGGCCGAAGA-G-ATAGAATGCGTAAG-CTGGGGATCAGCCCGAT-CCCCTCTGCATGCTGCC
64 GCTGGCCGAAGAGGCATA-AATGC--AAGTC-GGGGATCAGCCCGATCCCCCTCTGCATGCTGCC
* * ** * *
15293202 -GATCCTGTTACCGTAACCCTCGATCCGGTCTGAT
125 AG-TCCCGCTACCACAACCCTCGATCCAGTCGGAT
*
15293236 CTTAGACTGGGAATAAACT
1 CTTAGACTGGGAATGAACT
15293255 TCGTATGCTT
Statistics
Matches: 268, Mismatches: 55, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 8 0.03
158 172 0.64
159 82 0.31
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGATCAGC
TGGCCGAAGAGGCATAAATGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCAGTCCC
GCTACCACAACCCTCGATCCAGTCGGAT
Found at i:15293272 original size:26 final size:26
Alignment explanation
Indices: 15293236--15293288 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15293226 CCGGTCTGAT
*
15293236 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
15293262 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15293288 C
1 C
15293289 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15293317 original size:501 final size:505
Alignment explanation
Indices: 15292038--15293354 Score: 1241
Period size: 514 Copynumber: 2.6 Consensus size: 505
15292028 GGTCCTGTTG
* * *** *
15292038 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCTACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * *
15292103 GAAACGAGC-G-T--AC-AGGC-ACCCATCAGACCGAAGAG-GTAGAATGCGCAAG-TCGAGGAA
66 GAAACGGGCTGATGGACGGGGCGATCAACCGGA-CGAAGAGAG-AGAATGCGCAAGCT-G-GGGA
* *** * * * *
15292160 T-GGCCCGATCTCCCCCAGTGC--GCTATTGATCTTGCTGCCGCAACCCTC-AGCCCAGTTCGAT
127 TCAGCCCGATC-CCCCC--TGCATGCTGCCGATCCTGCTACCGCAACCCTCGA-TCCGGTTCGAT
* * *
15292221 CTTAGACTGGGAATAAACCCCGTATCCTTAGACAT-GGAATAAACTCCGTATGCCTAAGACAACC
188 CTTAGACTGGGAATAAA-CTCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACC
* * * * * *
15292285 CTCAAAACGAGCGTACGGGCGCTCAGCC-AATCGGAGAGGCAGAATGCGC-AGGCTGTGGATCGG
250 CACAAAACGAGCGTGCGGGCGCTCAGCCGACT-GAAGAGGCAGAATGCGCAAGTC-GGGGATCGG
* * * ** * * * * **
15292348 CCCGATCCCCCCCTGTGTGCTGTTGATCCTGCTACCGCAACCCTTGATCCGATCTGATCTTAGAC
313 CCCGATCCCCCACTATGTGCTCTCAATCCTGCTACCACAACCCTAGATCAGACCAAATCTTAGAC
* * * *
15292413 TGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATGAGCGTGCGGGCGCTCAGTCGGCCGG
378 TGGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCGG
* * * *
15292478 AGAGGTATAACACGCAAACCAGAGATCAGCCTGGTCCCCCTCTGCGTACTATCGGTCCCACTG
443 AGAGGCATAACACGCAAACCAGAGATCAGCCTGGTCCCCCTCTGCGTACTACCAGTCCCACTA
*
15292541 CCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* *
15292606 GAAACGGGCTTAGACATGGACGTGTGGGCGCTCAACCGGACGAAGAGGGAGAATGCGCAAGCTGG
66 GAAACGGGC-T-G--ATGGAC--G-GGGCGATCAACCGGACGAAGAGAGAGAATGCGCAAGCTGG
* * * * * * *
15292671 GGATCGGCCCGGTCCCCCCTGCGTGCTGCCGGTCCTGCTACCGCAACGCTTGGTCCGGTTCGATC
124 GGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATC
*
15292736 TTAGACTGGGAATGAACTCTGTATGCTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCTAACCC
189 TTAGACTGGGAATAAACTC-GTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGC-AACCC
** * * *
15292800 ATTAAACGAGCGTGCGGGCGTTCAGCCGACTGAAGAGGCAGAATGCGCAAGTCGGGGATCGGTCT
251 ACAAAACGAGCGTGCGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC
* * * *
15292865 GGTCCCCCACTATGTGCTCTCAATCTTGTTGCCACAACCCTCAG-TCTAG-CCAAATCTTAGACT
316 GATCCCCCACTATGTGCTCTCAATCCTGCTACCACAACCCT-AGATC-AGACCAAATCTTAGACT
* * * *
15292928 GGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAG-CTGGTCGG
379 GGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTC-GGCCGG
** ** * * * * * * *
15292992 AGAGGCATAA-TTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGTGTGCTGCCAGTCCCGCTA
443 AGAGGCATAACACGCAAACCAGAGATCAGCCTGGTCCCCCTCTGCGTACTACCAGTCCCACTA
* *
15293054 CCACAACCCTCGGTCC-AGTGGGAGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCGACTGGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* *** * * *
15293118 TGAAACGGGC-G-T-G-C-GGGCGATCAGTTGGCCGAAGAGATAGAATGCGTAAGCTGGGGATCA
65 CGAAACGGGCTGATGGACGGGGCGATCAACCGGACGAAGAGAGAGAATGCGCAAGCTGGGGATCA
* * *
15293178 GCCCGATCCCCTCTGCATGCTGCCGATCCTGTTACCGTAACCCTCGATCCGG-TCTGATCTTAGA
130 GCCCGATCCCCCCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTTC-GATCTTAGA
*
15293242 CTGGGAATAAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAA
194 CTGGGAATAAAC-TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACAAAA
* * * * *
15293307 TGAGCGTGCGGGCGCTCAGTCGACT-AGAGAGGTAGGATGCACAAGTCG
257 CGAGCGTGCGGGCGCTCAGCCGACTGA-AGAGGCAGAATGCGCAAGTCG
15293355 AGCATCGAAC
Statistics
Matches: 668, Mismatches: 112, Indels: 70
0.79 0.13 0.08
Matches are distributed among these distances:
500 3 0.00
501 183 0.27
502 4 0.01
503 66 0.10
505 1 0.00
506 2 0.00
507 1 0.00
509 1 0.00
510 1 0.00
511 2 0.00
512 8 0.01
513 106 0.16
514 245 0.37
515 38 0.06
516 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (505 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGGGCTGATGGACGGGGCGATCAACCGGACGAAGAGAGAGAATGCGCAAGCTGGGGATCAG
CCCGATCCCCCCTGCATGCTGCCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTAGACT
GGGAATAAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACAAAACGAG
CGTGCGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCAC
TATGTGCTCTCAATCCTGCTACCACAACCCTAGATCAGACCAAATCTTAGACTGGGAATGAACTC
CACATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCGGAGAGGCATAACAC
GCAAACCAGAGATCAGCCTGGTCCCCCTCTGCGTACTACCAGTCCCACTA
Found at i:15293888 original size:11 final size:11
Alignment explanation
Indices: 15293868--15293900 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15293858 CGGTTAGGCT
15293868 CTCCGGCGATG
1 CTCCGGCGATG
*
15293879 CTCCGACGATG
1 CTCCGGCGATG
15293890 CTCCGGCGATG
1 CTCCGGCGATG
15293901 GTGCCCCGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:15294498 original size:158 final size:157
Alignment explanation
Indices: 15293996--15294620 Score: 574
Period size: 158 Copynumber: 4.0 Consensus size: 157
15293986 AACTCCGTAT
* * * *
15293996 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
15294061 CCGGTCGGAGAGACAGAATGTGCAAGCCAGGGATCGGCTCGATCCCCCCTACGTGTTGTCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCC
* * * * *
15294126 TGCTGCCGCAACCCTCGGTCTGGTCTGA
131 TACTGCCACAACCCTCGGTC-CGACTGG
* * * * * * *
15294154 TCTTAGTC-TCAGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGTTGA
1 GCTTAGACATGA-AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * * *
15294218 GTCGGTCGAAGAGGAATAATGCGCAAGTCGGGGATTGGCCCGATCCCCCTTTGCGTGCTG-CTGG
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTGCGTGCTGTC-GA
* * * * *
15294282 TCCCAGTACCACAACCCTCGGTTCGGCTGGG
128 TCCTACTGCCACAACCCTCGGTCCGACT-GG
* * ** *
15294313 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGTGGGTGCTCA
1 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGCTCA
* * * * *
15294377 GCCGACCGAAGAGGCAGATTGTGCAAGCCGGGGATCGGCTCGGTCCCTCCTGCGTGCTGTCGATC
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATC
* *
15294442 GTACTGCCACAACCCTCGGTCCAACTAGG
130 CTACTGCCACAACCCTCGGTCCGACT-GG
* * * * *
15294471 GCTTAGGCATGAAAAGAACTCCATATGCTTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
15294536 CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCAGC-CTGGTCCCCCCTGCATGCTATCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GATCCCCCCTGCGTGCTGTCGATC
* * *
15294600 CTGCTGTCGCAACCCTCGGTC
130 CTACTGCCACAACCCTCGGTC
15294621 TGATCCGATC
Statistics
Matches: 369, Mismatches: 89, Indels: 18
0.78 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 253 0.69
159 113 0.31
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCC
TACTGCCACAACCCTCGGTCCGACTGG
Found at i:15295641 original size:26 final size:26
Alignment explanation
Indices: 15295589--15295653 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
15295579 CCAATCACCG
* **
15295589 GAACCCTGTATGCTTAGACTGGGAAT
1 GAACTCTGTATGCTTAGACTGAAAAT
15295615 GAACTCTGTATGCTTAGACAT-AAAAT
1 GAACTCTGTATGCTTAGAC-TGAAAAT
15295641 GAACT-TCGTATGC
1 GAACTCT-GTATGC
15295654 CTAAGCCAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.03
26 32 0.94
27 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
GAACTCTGTATGCTTAGACTGAAAAT
Found at i:15296332 original size:26 final size:26
Alignment explanation
Indices: 15296292--15296344 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15296282 GGCTCAAAAT
15296292 CTTAGACTGGAAATGAACT-TCGTATG
1 CTTAGACTGGAAATGAACTCT-GTATG
15296318 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCTGTATG
15296344 C
1 C
15296345 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:15297925 original size:159 final size:157
Alignment explanation
Indices: 15297578--15298110 Score: 579
Period size: 159 Copynumber: 3.4 Consensus size: 157
15297568 AACACCATGT
* * * * *
15297578 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
15297643 TCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATTGACCTGGTCCCCCTACGTGCTGTCGA-TCC
66 TCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTGCTGTCGATTCC
** * *
15297707 TGCTGCTGCAACCCTCGGTCCGGTTCGA
131 -GCTGCCACAACCCTCGGTCCGGCTAGA
* * * * * * *
15297735 TCTTACAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCAGGCGCTGA
1 GCTTACACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
15297799 G-CTGGCCGGAGAGGCATAATACGCAAGCCGGGGATCGG-CTCGGTCCACCTCTACATGCTGCCG
65 GTC-GGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCT-GGTCC-CC-CTACGTGCTGTCG
15297862 ATTCCGCTGCCACAACCCTCGGTCCGGCTAGA
126 ATTCCGCTGCCACAACCCTCGGTCCGGCTAGA
* * * * * *
15297894 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGTGGGTGGTCAT
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15297959 TCGGCTGGAGAAGTAGAATGCACAAGCTGGGGATCGGCCTGGCCCCCCTGCGTGCTTTTCGATCC
66 TCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTGC-TGTCGATTC
* * * *
15298024 CGCTGCCATAACCCTCGGTCCGACTGGG
130 CGCTGCCACAACCCTCGGTCCGGCTAGA
* *
15298052 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGC
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
15298111 CAATTGCCGG
Statistics
Matches: 313, Mismatches: 53, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
156 4 0.01
157 96 0.31
158 89 0.28
159 117 0.37
160 7 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTGCTGTCGATTCC
GCTGCCACAACCCTCGGTCCGGCTAGA
Found at i:15298153 original size:158 final size:156
Alignment explanation
Indices: 15297852--15298237 Score: 406
Period size: 158 Copynumber: 2.4 Consensus size: 156
15297842 TCCACCTCTA
* * * *
15297852 CATGCTGCCGATTCCGCTGCCACAACCCTCGGTCCGGCTAGAGCTTACACATGGAATGAACTCCC
1 CATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACT-GAGCTTAGACATGGAATGAACTCCC
* * * * *
15297917 TATGCCTAAGCCAACCCATGGAACGGGCGTGTGGGTGGTCATTCGGCTGGAGAAGTAGAATGCAC
65 TATGCCTAAGCCAACCCATGAAACGGGCG-GTGCGTGGCCATTCGGCTAGAGAAGCAGAATGCAC
* * *
15297982 AAGCTGGGGATCGG-CCTGGCCCCCCTG
129 AAGCTGAGAATCGGCCCAGGCCCCCCTG
* * * *
15298009 CGTGCTTTTCGATCCCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCC
1 CATGC-TGTCGATCCCGCTGCCACAACCCTCGGTCCGACT-GAGCTTAGACATGGAATGAACTCC
*
15298074 CTATGCCTAAGCCAACCCATGAAACGGGC-GTGCG-GGCCAATTGCCGG-TCAGAGAGGCAGAAT
64 CTATGCCTAAGCCAACCCATGAAACGGGCGGTGCGTGGCC-ATT--CGGCT-AGAGAAGCAGAAT
** *
15298136 GCGTAAG-TCGAGAATCGGCCCAGTCCCCCCTG
125 GCACAAGCT-GAGAATCGGCCCAGGCCCCCCTG
* * * *
15298168 CATGCTGTCGATCCTGCTGTCACAACCCTCGGTCTGATCTGATCTTAGAC-TGGGAATGAACTCC
1 CATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGA-CTGAGCTTAGACAT-GGAATGAACTCC
*
15298232 GTATGC
64 CTATGC
15298238 TTAGATTGGG
Statistics
Matches: 190, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
155 3 0.02
156 7 0.04
157 7 0.04
158 156 0.82
159 17 0.09
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (156 bp):
CATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTGAGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCAACCCATGAAACGGGCGGTGCGTGGCCATTCGGCTAGAGAAGCAGAATGCACAA
GCTGAGAATCGGCCCAGGCCCCCCTG
Found at i:15298226 original size:316 final size:316
Alignment explanation
Indices: 15297578--15298237 Score: 706
Period size: 316 Copynumber: 2.1 Consensus size: 316
15297568 AACACCATGT
*
15297578 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
15297643 TCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATTGACCTGGTCCCCCTACGTGCTGTCGATCCT
66 TCGGCCGGAGAAGTAGAATGCACAAGTCGGGGATCGACCTGGCCCCCCTACGTGCTGTCGATCCC
** ** * * *
15297708 GCTGCTGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAAC
131 GCTGCCACAACCCTCGGTCCGACTCGAGCTTACACTGGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * *
15297773 CCAAGAAATGAGCGTGCAGGCGCTGAGCTGGCCGGAGAGGCATAATACGCAAGCCGGGGATCGGC
196 CCAAGAAACGAGCGTGCAGGCGCTGAGCCGGCCAGAGAGGCAGAATACGCAAGCCGAGAATCGGC
* * *
15297838 TCGGTCCACCTCTACATGCTGCCGATTCCGCTGCCACAACCCTCGGTCCGGCTAGA
261 CCAGTCCACCCCTACATGCTGCCGATTCCGCTGCCACAACCCTCGGTCCGGCTAGA
* * * * * ** * * *
15297894 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGTGGGTGGTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
15297959 TCGGCTGGAGAAGTAGAATGCACAAG-CTGGGGATCGGCCTGGCCCCCCTGCGTGCTTTTCGATC
66 TCGGCCGGAGAAGTAGAATGCACAAGTC-GGGGATCGACCTGGCCCCCCTACGTGC-TGTCGATC
* * * *
15298023 CCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
129 CCGCTGCCACAACCCTCGGTCCGACTCGAGCTTACAC-TGGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * *
15298087 AACCCATGAAACGGGCGTGCGGGC-CAAT-TGCCGGTCAGAGAGGCAGAATGCGTAAGTCGAGAA
193 AACCCAAGAAACGAGCGTGCAGGCGC--TGAGCCGGCCAGAGAGGCAGAATACGCAAGCCGAGAA
* * * * *
15298150 TCGGCCCAGTCC-CCCCTGCATGCTGTCGA-TCCTGCTGTCACAACCCTCGGTCTGATCT-GA
256 TCGGCCCAGTCCACCCCTACATGCTGCCGATTCC-GCTGCCACAACCCTCGGTCCG-GCTAGA
*
15298210 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15298238 TTAGATTGGG
Statistics
Matches: 280, Mismatches: 56, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
315 5 0.02
316 159 0.57
317 114 0.41
318 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
TCGGCCGGAGAAGTAGAATGCACAAGTCGGGGATCGACCTGGCCCCCCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGACTCGAGCTTACACTGGGAATGAACTCCCTATGCCTAAGCCAAC
CCAAGAAACGAGCGTGCAGGCGCTGAGCCGGCCAGAGAGGCAGAATACGCAAGCCGAGAATCGGC
CCAGTCCACCCCTACATGCTGCCGATTCCGCTGCCACAACCCTCGGTCCGGCTAGA
Found at i:15298247 original size:26 final size:26
Alignment explanation
Indices: 15298211--15298263 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15298201 CTGATCTGAT
15298211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
15298237 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15298263 C
1 C
15298264 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15298320 original size:13 final size:13
Alignment explanation
Indices: 15298302--15298326 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15298292 GGCGCTTAGC
15298302 CGATCGGAGAGGT
1 CGATCGGAGAGGT
15298315 CGATCGGAGAGG
1 CGATCGGAGAGG
15298327 CATAATGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
CGATCGGAGAGGT
Found at i:15298715 original size:368 final size:362
Alignment explanation
Indices: 15298025--15298715 Score: 801
Period size: 368 Copynumber: 1.9 Consensus size: 362
15298015 TTTCGATCCC
*
15298025 GCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
15298090 CCATGAAACGGGCGTGCGGGCCAATTGCCGGTCAGAGAGGCAGAATGCGTAAGTCGAGAATCGGC
66 CCACGAAACGAGCGTACGGGCCAATTGCCGGCCAGAGAGGCAGAATGCGTAAGCCGAGAATCGGC
* *
15298155 CCAGTCCCCCCTGCATGCTGTCGATCCTGCTGTCACAACCCTCGGTCTGATCTGATCTTAGACTG
131 CCAGTCCCCCCTGCATGCTGTCGATCCTGCTGTCACAACCCTCAGTCCGATCTGATCTTAGACTG
* * * * *
15298220 GGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGA
196 GGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
* * * *
15298285 GCGTGCAGGCGCTTAGCCGATCGGAGAGGTCGATCGGAGAGGCATAATGCACAAGCCGGGGATCA
261 GCGTGCAGGCGC-TA-CC-ATC---GAGGCCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCA
15298350 GCCCGATCCCCCTCTACGTGTTGTCGATCACGCTATCGGTCCT
320 GCCCGATCCCCCTCTACGTGTTGTCGATCACGCTATCGGTCCT
* * *
15298393 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
15298458 CCACGAAATGAGCGTACGGG-C-GTTCAGTCGGCCGGAGAGGCAGAATGCGTAAGCCTG-GGATC
66 CCACGAAACGAGCGTACGGGCCAATT--GCCGGCCAGAGAGGCAGAATGCGTAAGCC-GAGAATC
** *
15298520 GGCCTGGTCCCACCCTGCATGCTGTCGATCTTGTTGCTGGTCCTGCTACCGCAACCCTCAGTCCG
128 GGCCCAGTCCC-CCCTGCATGCTGTCGATC------CT-G--CTG-T--CACAACCCTCAGTCCG
* *
15298585 ATCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACAT-GGAATGGACTCCGTATGCCTAA
180 ATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA-ATGGGAATGAACTCCGTATGCCTAA
* *
15298649 GCCAACCCATGAAAGGAGCGTGC-GG-GC-A-C-TC-A-GCCGACCGAAGAGGCAAAATGCATAA
244 GCCAACCCATGAAACGAGCGTGCAGGCGCTACCATCGAGGCCGACCGAAGAGGCAAAATGCACAA
*
15298707 GTCGGGGAT
309 GCCGGGGAT
15298716 TGACCCAGTC
Statistics
Matches: 273, Mismatches: 33, Indels: 34
0.80 0.10 0.10
Matches are distributed among these distances:
366 2 0.01
367 1 0.00
368 144 0.53
369 20 0.07
373 2 0.01
375 3 0.01
376 1 0.00
377 1 0.00
378 3 0.01
379 3 0.01
380 2 0.01
381 90 0.33
382 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (362 bp):
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCGTACGGGCCAATTGCCGGCCAGAGAGGCAGAATGCGTAAGCCGAGAATCGGC
CCAGTCCCCCCTGCATGCTGTCGATCCTGCTGTCACAACCCTCAGTCCGATCTGATCTTAGACTG
GGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
GCGTGCAGGCGCTACCATCGAGGCCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGA
TCCCCCTCTACGTGTTGTCGATCACGCTATCGGTCCT
Found at i:15298919 original size:159 final size:157
Alignment explanation
Indices: 15298618--15299120 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 157
15298608 ACTCCATATG
* * *
15298618 CTTAGAC-ATGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
15298682 CCGACCGAAGAGGCAAAATGCATAAGTCGGGGATTGACCCAGTCCCTCCCTGCGTGCTGTCTA-T
65 CTGACCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCC-CCCTGCGTGCTG-CCAGT
*
15298746 CCTGC-TG-ATGCAACCCTCAGTCCAGTCTGAT
128 CCTGCTTGCA--CAACCCTCGGTCC-GTCTGAT
* * * * * *
15298777 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
15298842 TGGCCGGAGAGGCATAATGCGCAAGTCAGGGATTGGCCCGGTCCCCCTCTACGTGCTGCCAGTCC
66 TGACCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCCCC-CTGCGTGCTGCCAGTCC
* * * * *
15298907 CGCTTGCACAACCTTTGGTCCGACTGAGG
130 TGCTTGCACAACCCTCGGTCCGTCTGA-T
* * * * *
15298936 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCA-A
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15299000 TCGACCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGATCACCCCTGCGTGCTGCC-GATC
66 T-GACCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCCAG-TC
* **
15299064 CTG-TTGCCGCAACCCTCGGTCCGGTCCAAT
129 CTGCTTG-CACAACCCTCGGTCC-GTCTGAT
*
15299094 CTTAGATTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
15299121 TTAGACATGG
Statistics
Matches: 279, Mismatches: 55, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 61 0.22
159 211 0.76
160 2 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
TGACCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCCAGTCCT
GCTTGCACAACCCTCGGTCCGTCTGAT
Found at i:15299249 original size:184 final size:184
Alignment explanation
Indices: 15298935--15299402 Score: 546
Period size: 184 Copynumber: 2.5 Consensus size: 184
15298925 TCCGACTGAG
* * *
15298935 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAA
* * ** *
15299000 TCGACCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGATCACCCCTGCGTGCTGCCGATCC
66 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCACCCCTACGTGCTGCCGATCC
** * * *
15299065 TGTTGCCGCAACCCTCGGTCCGGTCCAATCTTAGATTAGG-AATGAACTCCGTAT
131 TACTACCGCAACCCTCGATCCGGTCCAATCTTAGACT-GGCAATGAACTCCGTAT
* * *
15299119 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAA
* * * * * *
15299184 CCGACCGAATAGGTAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCACCCCTACGTGCTGCCGATCC
* *
15299249 TACTACCGCAACCCTCGATCCGGTGCGATCTTAGACTGGCAATGAACTCCGTAT
131 TACTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGCAATGAACTCCGTAT
* * ** * * * * *
15299303 GCTTAGA-TTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGACGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCA
* * ** *
15299367 ACCAACC-AGAGAGGTAGGGTGCGCAAGCCGGGGATC
65 ACCGACCGA-AGAGGCAGAATACGCAAGCCGGGGATC
15299403 GAACGGGTGG
Statistics
Matches: 240, Mismatches: 41, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
183 4 0.02
184 236 0.98
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAA
CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCACCCCTACGTGCTGCCGATCC
TACTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGCAATGAACTCCGTAT
Found at i:15299307 original size:26 final size:26
Alignment explanation
Indices: 15299278--15299330 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15299268 CCGGTGCGAT
15299278 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
* ** *
15299304 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
15299330 C
1 C
15299331 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:15300043 original size:26 final size:26
Alignment explanation
Indices: 15300002--15300052 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15299992 GCTCAAACTC
15300002 TTAGACTGGAATTGAACTCCGTATGG
1 TTAGACTGGAATTGAACTCCGTATGG
15300028 TTAGACATGGAA-TGAACTCCGTATG
1 TTAGAC-TGGAATTGAACTCCGTATG
15300053 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAATTGAACTCCGTATGG
Found at i:15300347 original size:158 final size:158
Alignment explanation
Indices: 15300028--15300336 Score: 347
Period size: 158 Copynumber: 2.0 Consensus size: 158
15300018 CTCCGTATGG
* * * * * * *
15300028 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAGCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCG
* *
15300093 GATCGGAGAGGCATATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCG
66 GATCGGAGAGGCAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCG
* * * *
15300158 CTGCCCCAACCCTCGGTTTGACTAGGGC
131 CTACCCCAACCCTCGATCTGACTAGAGC
* *
15300186 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-C
* * * * *
15300251 GGCT-GGAGAGGCAGAATGTGCAAGCCGGGGATC-GACCTGATCCCCCT-TGCGTGCTGTC-GAT
65 GGATCGGAGAGGCA-AATGCGCAAGCCGGGGATCAG-CCCGATCCCCCTCTGCATGCTGCCAG-T
* * *
15300312 CCTGCTATCGCAACCCTCGATCTGA
127 CCCGCTACCCCAACCCTCGATCTGA
15300337 TCCGATCTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 94 0.75
159 30 0.24
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCG
GATCGGAGAGGCAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCAGTCCCG
CTACCCCAACCCTCGATCTGACTAGAGC
Found at i:15301591 original size:25 final size:25
Alignment explanation
Indices: 15301558--15301613 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
15301548 CTCGATCCGG
15301558 TCCG-ATCTTAGACTGGGAATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
15301582 TCCGTATCTTAGACTGGGAATGAAC
1 TCCGTATCTTAGACTGGGAATGAAC
15301607 TCCGTAT
1 TCCGTAT
15301614 GCCTAAGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 4 0.13
25 27 0.87
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
TCCGTATCTTAGACTGGGAATGAAC
Found at i:15303027 original size:26 final size:26
Alignment explanation
Indices: 15302998--15303050 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15302988 CCGATCTGAT
15302998 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGCG-ATGAACTCCGTATG
15303024 CTTAGACTGGCGATGAACTCCGTATG
1 CTTAGACTGGCGATGAACTCCGTATG
15303050 C
1 C
15303051 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCGATGAACTCCGTATG
Found at i:15304079 original size:26 final size:26
Alignment explanation
Indices: 15304050--15304100 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15304040 GATTCGATCT
*
15304050 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
15304076 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15304101 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:15304387 original size:368 final size:368
Alignment explanation
Indices: 15303851--15304518 Score: 952
Period size: 368 Copynumber: 1.8 Consensus size: 368
15303841 CCTCTGCATG
*
15303851 CTGCCGATCCTGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGCCGATCCTGCTGCCACAACCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* * * *
15303916 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACTGATCGGAGAGGCAGAATGCGTAAGC
66 CCTAAGCCAACCCATCAAACAAGCGTGCAGACGCTCAACTGATCGGAGAGGCAGAATGCGTAAGC
* * * * * *
15303981 TAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGATTCG
131 GAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCCA
* *
15304046 ATCTTAGACTGGGAATGAAC-TCTGTATGCATAGAC-TGGGGATGAACTCCGTATGCCTAAGTCA
196 ATCTTAGACTGGGAATGAACTTC-GTATGCATAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
15304109 ACACATGAAACGAGCGTGCGGACACTCAACCGGCTGGAGAGGCCGACCGAAGAGGCATAATGCGT
259 ACACATGAAACGAGCGTGCGGACACTCAACCGGCTGGAGAGGCCGACCGAAGAGGCATAATGCGT
15304174 AAGCCGAGGATCAACCCGATCCCCCTCTGTGTGCTACCGATCTCA
324 AAGCCGAGGATCAACCCGATCCCCCTCTGTGTGCTACCGATCTCA
* * * **
15304219 CTGCCGGTCCTGTTGCCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCTGTAT
1 CTGCCGATCCTGCTGCCACAACCCTCGAT-CAGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* **
15304283 GCCTAAGCCAACCCA-CAGACAAGCGTGCAGACGCTCAGTTG-TCCGGAGAGGCAGAATGCGTAA
65 GCCTAAGCCAACCCATCAAACAAGCGTGCAGACGCTCAACTGAT-CGGAGAGGCAGAATGCGTAA
* **
15304346 GTCGA-GGATCGGCCTGATCCTCCCCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGA
129 G-CGAGGGATCGGCCCGATCC-CCCCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGA
* *
15304410 TCCAATCTTAGACTGGGATTGAACTTCGTATGCCTAGACATGGAATGAACTCCGTATGCCTAAGC
192 TCCAATCTTAGACTGGGAATGAACTTCGTATGCATAGACATGGAATGAACTCCGTATGCCTAAGC
* * * ** *
15304475 CAACCCATGAAACGAGCGTTCGGGCACTCAGTCGGTTGGAGAGG
257 CAACACATGAAACGAGCGTGCGGACACTCAACCGGCTGGAGAGG
15304519 TAGAATGCGT
Statistics
Matches: 262, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
366 1 0.00
367 53 0.20
368 203 0.77
369 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (368 bp):
CTGCCGATCCTGCTGCCACAACCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCATCAAACAAGCGTGCAGACGCTCAACTGATCGGAGAGGCAGAATGCGTAAGC
GAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCCA
ATCTTAGACTGGGAATGAACTTCGTATGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
ACATGAAACGAGCGTGCGGACACTCAACCGGCTGGAGAGGCCGACCGAAGAGGCATAATGCGTAA
GCCGAGGATCAACCCGATCCCCCTCTGTGTGCTACCGATCTCA
Found at i:15304626 original size:184 final size:184
Alignment explanation
Indices: 15304260--15304629 Score: 426
Period size: 184 Copynumber: 2.0 Consensus size: 184
15304250 AGCTGGGGCT
* * * *
15304260 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAGACAAGCGTGCAGACGCTCAGTTGT
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAACAAGCGTGCAGACACTCAGTGGT
*
15304325 CCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCTGATCCTCCCCTGTGTGCTGCCGATCCTGC
66 CCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCTGATCCTCCCCTGCGTGCTGCCGATCCTGC
* * * * * * *
15304390 TGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGATTGAACTTCGTATGCC
131 TACCGCAACCCTCGGTCAGATCCAATCTTAAACTAGAAATGAACTCCGTATGCC
* * * * *
15304444 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCACTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAACAAGCGTGCAGACACTCAGT-G
* * * **
15304509 GT-TGGAGAGGTAGAATGCGTAAGTCGAGGA-CTGG-CTCGATCC-CTCCTGCGTGCTGTTGATC
64 GTCCGGAGAGGCAGAATGCGTAAGTCGAGGATC-GGCCT-GATCCTCCCCTGCGTGCTGCCGATC
* * **
15304570 CTGCTACCGTAACCCTCTGTCTAG-TCTGATCTTAAACTAGAAATGAACTCCGTATGCC
127 CTGCTACCGCAACCCTCGGTC-AGATCCAATCTTAAACTAGAAATGAACTCCGTATGCC
15304628 TA
1 TA
15304630 CGTCAACCCA
Statistics
Matches: 155, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
184 102 0.66
185 51 0.33
186 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (184 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAACAAGCGTGCAGACACTCAGTGGT
CCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCTGATCCTCCCCTGCGTGCTGCCGATCCTGC
TACCGCAACCCTCGGTCAGATCCAATCTTAAACTAGAAATGAACTCCGTATGCC
Found at i:15306342 original size:26 final size:26
Alignment explanation
Indices: 15306304--15306356 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15306294 CCGGTCCGAT
*
15306304 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15306330 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15306356 C
1 C
15306357 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15306834 original size:26 final size:26
Alignment explanation
Indices: 15306805--15306857 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15306795 TCGGTCCGAT
15306805 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15306831 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15306857 C
1 C
15306858 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15307188 original size:26 final size:26
Alignment explanation
Indices: 15307159--15307211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15307149 CCGATCCAAT
*
15307159 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
15307185 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
15307211 C
1 C
15307212 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15308229 original size:26 final size:26
Alignment explanation
Indices: 15308200--15308249 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15308190 GTCTGATATT
15308200 AGACTCAAAATGAACTCCGTATGCTG
1 AGACTCAAAATGAACTCCGTATGCTG
****
15308226 AGACTGGGGATGAACTCCGTATGC
1 AGACTCAAAATGAACTCCGTATGC
15308250 CTATGTCAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTCAAAATGAACTCCGTATGCTG
Found at i:15309267 original size:121 final size:121
Alignment explanation
Indices: 15309015--15309267 Score: 308
Period size: 121 Copynumber: 2.1 Consensus size: 121
15309005 AAGCTGGGGA
* * * * * * *
15309015 TCAGCCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTT
1 TCAG-CCGGCCCCCCTCTGCATGCAGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTT
* * * * **
15309080 AGACATGGAATGAATTCCCTATGCCTATGCCAACCTACGAAACGGGCGTGTGGGCGC
65 AGACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGC
* * *
15309137 TTAGCCGGCCCCCCTCTGCGTGCAGCCAGTCCCACTGCCACAACCCTCGGTCCGATTGGGGCTTA
1 TCAGCCGGCCCCCCTCTGCATGCAGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTA
* * * *
15309202 GACATCGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAGGTGC
66 GACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGC
*
15309258 TCAGTCGGCC
1 TCAGCCGGCC
15309268 AGAGAGGCAG
Statistics
Matches: 109, Mismatches: 22, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
121 106 0.97
122 3 0.03
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (121 bp):
TCAGCCGGCCCCCCTCTGCATGCAGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTA
GACATCGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGC
Found at i:15309392 original size:26 final size:26
Alignment explanation
Indices: 15309356--15309408 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15309346 CTAGTTTGAT
* *
15309356 CTTAGTCTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
15309382 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15309408 C
1 C
15309409 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15309894 original size:157 final size:156
Alignment explanation
Indices: 15309566--15310064 Score: 495
Period size: 157 Copynumber: 3.2 Consensus size: 156
15309556 CCGGTCCATT
* * *
15309566 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * * * *
15309631 C-AGCCGGAAAGGCATAATGTGTAAGTCAGGGACCGACCTGGTCAACCCTACGTGCTGTCGATCC
66 CGA-CCGGAGAGGCATAATGCGCAAGTCGGGGACCGACC-GATC-CCCCTACGTGCTGTCGATCC
* * * * *
15309695 TGCTGCCGCAACCCTCAGTCTGGTCTGAT
128 TACTACCACAACCCTCAGTCCGGTCTGAG
* * *
15309724 ATTAGA-TTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * *
15309788 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCCGTGCTGTCGGT-CTC
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGACCGAC-CGATCCCCCTACGTGCTGTCGATCCT-
* *
15309852 ACTACCACAACCCTCGGTCCGG-CTGGGG
129 ACTACCACAACCCTCAGTCCGGTCT-GAG
* * * * * * *
15309880 CTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCGTTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * *
15309945 CGGCCGGTGAGGCAGAATGCGCAAG-CTGGGGACCGACCCGATCCCCCCTACGTACTGTCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGTC-GGGGACCGA-CCGAT-CCCCCTACGTGCTGTCGATCC
* ** * * * *
15310009 TGCTGTCGCAACCCTCGGTCCGATCTGAT
128 TACTACCACAACCCTCAGTCCGGTCTGAG
* *
15310038 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTTGGAATGAACTCCGTATGC
15310065 TTAGATGGGG
Statistics
Matches: 278, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
155 4 0.01
156 39 0.14
157 167 0.60
158 64 0.23
159 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
CGACCGGAGAGGCATAATGCGCAAGTCGGGGACCGACCGATCCCCCTACGTGCTGTCGATCCTAC
TACCACAACCCTCAGTCCGGTCTGAG
Found at i:15310067 original size:26 final size:26
Alignment explanation
Indices: 15310038--15310090 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15310028 CCGATCTGAT
*
15310038 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
*
15310064 CTTAGATGGGGGATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
15310090 C
1 C
15310091 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:15311676 original size:26 final size:26
Alignment explanation
Indices: 15311634--15311686 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15311624 CCGATCTGAT
15311634 CTTAGACTGGGAATGAACTTC-GTATG
1 CTTAGACTGGGAATGAAC-TCAGTATG
*
15311660 CTTAGACAT-GGATTGAACTCAGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
15311686 C
1 C
15311687 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:15311847 original size:26 final size:26
Alignment explanation
Indices: 15311818--15311870 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15311808 CCGGTCTGAT
*
15311818 CTTAAACCT-GGAATGAACTCCGTATG
1 CTTAAA-CTGGGAATGAACTCCATATG
* *
15311844 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
15311870 C
1 C
15311871 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:15311934 original size:184 final size:184
Alignment explanation
Indices: 15311605--15311955 Score: 408
Period size: 184 Copynumber: 1.9 Consensus size: 184
15311595 CTGCTGGCCC
* * * *
15311605 TGCTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATG
1 TGCTGCCGCAACCCTCAGCCCGATCTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACATG
** * * * **
15311670 GATTGAACTCAGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGACGCTCAGTCGGCTGGAGA
66 GATTGAACTCAGTATGCCTAAGCCAACCCACAAAACGAACATACGGACGCTCAGCCGGCCAGAGA
* *
15311735 GGAAAAATACGCAAGCC-AGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCT
131 GGAAAAATACGCAAGCCGA-GGATCGACCCAATCCCCCCTGCGTGTTGTCGATCT
* *
15311789 TGCTGCCGTAACCCTCAGCCCGGTCTGATCTTAAACCT-GGAATGAACTCCGTATGCTTAGAC-T
1 TGCTGCCGCAACCCTCAGCCCGATCTGATCTTAAA-CTGGGAATGAACTCCGTATGCTTAGACAT
* * * *
15311852 GGGGA-TGAACTCCA-TATGCCTAAGTCAACCCACAAAACGAACATACAGG-GGTTGAGCCGGCC
65 --GGATTGAACT-CAGTATGCCTAAGCCAACCCACAAAACGAACATAC-GGACGCTCAGCCGGCC
* * *
15311914 AGAGAGGCATAATGCGCAAGCCGAGGATCGACCCAATCCCCC
126 AGAGAGGAAAAATACGCAAGCCGAGGATCGACCCAATCCCCC
15311956 TCTGAGTGCT
Statistics
Matches: 139, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
183 1 0.01
184 128 0.92
185 10 0.07
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (184 bp):
TGCTGCCGCAACCCTCAGCCCGATCTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACATG
GATTGAACTCAGTATGCCTAAGCCAACCCACAAAACGAACATACGGACGCTCAGCCGGCCAGAGA
GGAAAAATACGCAAGCCGAGGATCGACCCAATCCCCCCTGCGTGTTGTCGATCT
Found at i:15312148 original size:343 final size:342
Alignment explanation
Indices: 15311659--15312608 Score: 1086
Period size: 343 Copynumber: 2.8 Consensus size: 342
15311649 AACTTCGTAT
* ** * * * *
15311659 GCTTAGACATGGATTGAACTCAGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCGTATGGGCACTCAA
* * * * * * * *
15311724 TCGGCTGGAGAGGAAAAATACGCAAGC-CAGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATC
65 TCGGCCGGAGAGGCAGAATACGCAAGCTGA-GGATCGGCCCGGTCCCTCCTACGTGCTGTCGATC
*
15311788 TTGCTGCCGTAACCCTCAGCCCGGTCTGATCTTAAACCT-GGAATGAACTCCGTATGCTTAGACT
129 TTGCTGCCGCAACCCTCAGCCCGGTCTGATCTTAAA-CTAGGAATGAACTCCGTATGCTTAGACT
* * * *
15311852 GGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAACATACAGGG-GTTGAGCCGGCCAG
193 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATAC-GGGAGCTGAGCCAGCCAG
* *
15311916 AGAGGCATAATGCGCAAGCCGAGGATC-GACCCAATCCCCCTCTGAGTGCTGCCGGTCCCGCTGC
257 AGAGGCATAATGCACAAGCCGAGGATCAG-CCCAATCCCCCTCTGAGTGCTGCCAGTCCCGCTGC
* **
15311980 CACAACCCTCGATCTGGCTGGG
321 CACAAACCTCGATCCAGCTGGG
*
15312002 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTATGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTATGGGCACTCAA
* * * *
15312067 TCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCTCCTACGTGCTGTCAATCC
65 TCGGCCGGAGAGGCAGAATACGCAAGCTGAGGATCGGCCCGGTCCCTCCTACGTGCTGTCGATCT
* * * * *
15312132 TGCTGCCGCAACCCTCAGCCCGGTCTGTTCTTAGACTGGGAATGAACTCTGTAGGCTTAGACTGG
130 TGCTGCCGCAACCCTCAGCCCGGTCTGATCTTAAACTAGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * * * * *
15312197 GAATGAACTCCGTATGCCTAAGTCAACCGATGAAGCGAGCGTGCGGGAGCTGAGTCATCCGGAGA
195 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGGAGCTGAGCCAGCCAGAGA
* * * *** * *
15312262 GGCGTAATGCACAAGCCGGGGATCAGCCCGATCCTTTTCTGTGTGCTGCCAGTCCCGCTGCCATA
260 GGCATAATGCACAAGCCGAGGATCAGCCCAATCCCCCTCTGAGTGCTGCCAGTCCCGCTGCCACA
* *
15312327 AACCTCGGTCCAGTTGGG
325 AACCTCGATCCAGCTGGG
* * * *
15312345 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGTGGGCACTC-A
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CGGCGTATGGGCACTCAA
* * * ** * **
15312409 GCTGGCCGGAGAGGCAGAATCCGTAAGCTTG-GGATCGATCCGGTCCTTCCTACGTGCTACCGAT
65 TC-GGCCGGAGAGGCAGAATACGCAAGC-TGAGGATCGGCCCGGTCCCTCCTACGTGCTGTCGAT
* * *
15312473 CTTGCTGTCGCAACCCTCGGCCCGGTCTGATCTTACACTAGGAATGAACTCCGTATGCTTAGACT
128 CTTGCTGCCGCAACCCTCAGCCCGGTCTGATCTTAAACTAGGAATGAACTCCGTATGCTTAGACT
* * * * *
15312538 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GACCAG
193 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGGAGCTGAGCCAG-CCAG
15312602 AGAGGCA
257 AGAGGCA
15312609 GGATGCGTAA
Statistics
Matches: 511, Mismatches: 87, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
342 7 0.01
343 499 0.98
344 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGCGTATGGGCACTCAAT
CGGCCGGAGAGGCAGAATACGCAAGCTGAGGATCGGCCCGGTCCCTCCTACGTGCTGTCGATCTT
GCTGCCGCAACCCTCAGCCCGGTCTGATCTTAAACTAGGAATGAACTCCGTATGCTTAGACTGGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGGAGCTGAGCCAGCCAGAGAG
GCATAATGCACAAGCCGAGGATCAGCCCAATCCCCCTCTGAGTGCTGCCAGTCCCGCTGCCACAA
ACCTCGATCCAGCTGGG
Found at i:15313263 original size:26 final size:26
Alignment explanation
Indices: 15313225--15313277 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15313215 GGCTCAAAAT
*
15313225 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
15313251 CTTAGAC-ATGGAATGAACTCAGTATG
1 CTTAGACTA-GGAATGAACTCAGTATG
15313277 C
1 C
15313278 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:15313606 original size:159 final size:159
Alignment explanation
Indices: 15313250--15313696 Score: 508
Period size: 159 Copynumber: 2.8 Consensus size: 159
15313240 AACTCCGTAT
* *
15313250 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15313315 CCGGTCGGAGTGGTAGAATGCGCAAGTCGGGGATGGGCCCGGTCCCCCCTTT--GTGCTATCGAT
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTTTGCGTGCTGTCGAT
* * * * *
15313378 CCTACTGCCATAACCCTCGGTCTGGTCTGA
130 CCCACTGCCACAACCCTCGATCTCGACTGA
** * * * *
15313408 TTTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
15313472 GCCTGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTTGCGTGCTGTCGGT
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGTCGAT
* *
15313537 CCCGCTGCCACAACCCTCGATC-CGACTGGG
130 CCCACTGCCACAACCCTCGATCTCGACT-GA
* * * * *
15313567 GCTTAGACATGGAATGAACGCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15313632 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGTCGATC
15313696 C
131 C
15313697 TGTTGCCGCG
Statistics
Matches: 240, Mismatches: 44, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
157 9 0.04
158 107 0.45
159 123 0.51
160 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGTCGATC
CCACTGCCACAACCCTCGATCTCGACTGA
Found at i:15313767 original size:26 final size:26
Alignment explanation
Indices: 15313728--15313778 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15313718 GGTTCGATCA
*
15313728 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
15313754 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15313779 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15315199 original size:26 final size:26
Alignment explanation
Indices: 15315149--15315200 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15315139 GCTCAAAATT
*
15315149 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
15315175 TTAGACAT-GGAATGAACTCTATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
15315201 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:15315203 original size:704 final size:698
Alignment explanation
Indices: 15313865--15315257 Score: 2155
Period size: 704 Copynumber: 2.0 Consensus size: 698
15313855 GAGTGGTCGG
15313865 TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAATTCATA
1 TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAATTCATA
** * * *
15313930 CAATGGTCCCCTAAGACTTCATATGAAGTTTCGTGGCAAGATGACTAGTTTTTTATTTTTCATGA
66 CAATGGTCCCCTAAGACTTCATATGAAGTTTCGTGGCAAGACAACCAGTTTTCTATTTTTCACGA
*
15313995 TTTTGCAACTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATT
131 TTTTGCAACTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGCTTTGTCCCCAAATT
* * * * *
15314060 AAATAGCGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACACGAAGTG
196 AAATAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACACAAAGTG
* *
15314125 GAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGTAG
261 GAGAAGATTTTGTGACAGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAG
* **
15314190 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGCTTGATGAGGGATAG
326 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGACTTCTCGAGGCTTGATGAGAAATAG
* * *
15314255 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGACCCCCCCA
391 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCGACCCCACCA
* **
15314320 ATCGTCGGAACCCCCAATGCCGTCGGTTAGGCTCTCCAGCGATGCTCCGGTGATGGTGCCCCAGG
456 ATCGTCGGAACCACCAATGCCGTCGGTTAGGCTCTCCAGCGATGCTCCGACGATGGTGCCCCAGG
* * *
15314385 CGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTTAAAATATTAGA
521 CAAAAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGA
* * *
15314450 CTGGGAATGAACTTCGTAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAA
586 CTGGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
*
15314515 CGAGCGTGTGGGCACTCAGCCGACCAGAGAGGTAGAATGCGTAAGCCA
651 CGAGCGTGCGGGCACTCAGCCGACCAGAGAGGTAGAATGCGTAAGCCA
* *
15314563 TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCCTA
1 TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAATTCATA
* * *
15314628 CAATGGTCCCCTCAA-CCTTCATCTGAAGTTTCGTGGCAAGACAACCCGTTTTCTATTTTTCACG
66 CAATGGTCCCCT-AAGACTTCATATGAAGTTTCGTGGCAAGACAACCAGTTTTCTATTTTTCACG
15314692 ATTTT-CAAAACCTTTTATG-A-TTCGGGATTTTTTAAAATTTTTTTAGAAAGAGCTTTGTCCCC
130 ATTTTGC--AA-CTTTT-TGTAGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGCTTTGTCCCC
*** * *
15314754 AAATTTGGTAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAACTTCAACTAAAAACTCA
191 AAATTAAATAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACACA
* *
15314819 AAGTGGAGAAGATTTTGTGATCATTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
256 AAGTGGAGAAGATTTTGTGA-CAGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTAC
* *
15314884 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAG
320 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGACTTCTCGAGGCTTGATGAG
15314949 AAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCC
385 AAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACA----CC
* * * *
15315014 GACCTCACCAATCGTCGGAACCACTAATGCTGTCGGTTAGGCTCTCCGGCGATGCTCCGACGATG
446 GACCCCACCAATCGTCGGAACCACCAATGCCGTCGGTTAGGCTCTCCAGCGATGCTCCGACGATG
* *
15315079 GTGCCCCGGGCAAAAAAAATGAGGCACCAGCACTTGCCCGAGCCCAGCATGTGCACCGTGGCTCA
511 GTGCCCCAGGCAAAAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTCA
* * *
15315144 AAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTATATGCCTAAGCCA
576 AAATATTAGACTGGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
** * * *
15315209 ACCCACGAAACGAGCGTGCGGGTGCTTAGCCGATCGGAGAGGTAGAATG
641 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGTAGAATG
15315258 TGCAAGCCGT
Statistics
Matches: 628, Mismatches: 57, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
697 1 0.00
698 121 0.19
699 120 0.19
700 163 0.26
701 2 0.00
704 221 0.35
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (698 bp):
TGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCATGTAAATTCATA
CAATGGTCCCCTAAGACTTCATATGAAGTTTCGTGGCAAGACAACCAGTTTTCTATTTTTCACGA
TTTTGCAACTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGCTTTGTCCCCAAATT
AAATAGAGGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACACAAAGTG
GAGAAGATTTTGTGACAGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAG
CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGACTTCTCGAGGCTTGATGAGAAATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCGACCCCACCA
ATCGTCGGAACCACCAATGCCGTCGGTTAGGCTCTCCAGCGATGCTCCGACGATGGTGCCCCAGG
CAAAAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGA
CTGGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGCACTCAGCCGACCAGAGAGGTAGAATGCGTAAGCCA
Found at i:15315861 original size:159 final size:158
Alignment explanation
Indices: 15315173--15315921 Score: 544
Period size: 159 Copynumber: 4.7 Consensus size: 158
15315163 AACTCCGTAT
** *
15315173 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * ** * * ** * *
15315238 CCGATCGGAGAGGTAGAATGTGCAAGCCGTGGATCAGTCTGGTCCCCCTCTACGTGTTGTCCA-T
66 CCGATAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTG-CCAGT
* * * * *
15315302 CCTGCTGCTACAA-TCGTGATCTGGTCTGA
130 CCTGCTACCACAACCCTTGGTCTGG-CTGA
* ** * * * * *** *
15315331 TCTTAGAC-TAGGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCGTACGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * * * * **
15315395 GCCGACCAAAAGAGGCATAATGCATAAGTCAGGGATTAGCCCGGTCCCCTTCAACGTGCTGCCAG
65 GCCGA-TAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCAG
* ** * * * *
15315460 TCTTGCTGGCACAGCCCTCGGACTGGCTGGG
129 TCCTGCTACCACAACCCTTGGTCTGGCT-GA
* * *
15315491 GCTTAGACATGGAATCAA-TGCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACT-CCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * ** * * * *
15315555 ACCGGCT-GGAGAGGCAGAATACGTAAGCCGGGGATCGGCAC-GATCCCCC-CAGCGTGCTGTCA
65 GCC-GATAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAG-TCCCCCTCTGCGTGCTGCCA
* * * *
15315617 ATCCTGCTACCGCAACCCTTGGTCCGATCTGA
128 GTCCTGCTACCACAACCCTTGGTCTG-GCTGA
** * * * *
15315649 TATTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* *
15315713 GCCGATAGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCAGT
65 GCCGATAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCAGT
* *
15315778 CCCGCTACCACAACCTTTGGTCTGGCTAGA
130 CCTGCTACCACAACCCTTGGTCTGGCT-GA
* * * * *
15315808 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCATGAAATGGGCGTGCGGATGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* ** ** * *
15315873 TCAGCCAG-AGAGGCAGAATGCACAAGCCAAGGATCGGCTCAGTCCCCCT
66 -CCGATAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCT
15315922 GCATGCTGCC
Statistics
Matches: 448, Mismatches: 125, Indels: 35
0.74 0.21 0.06
Matches are distributed among these distances:
157 4 0.01
158 178 0.40
159 204 0.46
160 60 0.13
161 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGATAGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCAGTC
CTGCTACCACAACCCTTGGTCTGGCTGA
Found at i:15315909 original size:317 final size:318
Alignment explanation
Indices: 15315326--15315910 Score: 751
Period size: 317 Copynumber: 1.8 Consensus size: 318
15315316 CGTGATCTGG
* *
15315326 TCTGATCTTAGACTAGGAATGAACTCTGTACGCATAAGTCAACCCACGAAACGAGCGTACGGGCA
1 TCTGATATTAGACTAGGAATGAACTCCGTACGCATAAGTCAACCCACGAAACGAGCGTACGGGCA
* * * * * * *
15315391 TTGAGCCGACCAAAAGAGGCATAATGCATAAGTCAGGGATTAGCCCGGTCCCCTTCAACGTGCTG
66 CTGAGCCGACCAAAAGAGGCATAATGCACAAGCCAGGGATCAGCCCAGTCCCCCTCAACATGCTG
** ** * * *
15315456 CCAGTCTTGCTGGCACAGCCCTCGGACTGGCTGGGGCTTAGACATGGAATCAATGCCCTATGCCT
131 CCAGTCCCGCTACCACAACCCTCGGACTGGCTAGAGCTTAGACATGGAATCAATGCCCTATGCCT
* * ** ** **
15315521 AAGCCAACCCACGAAACGGGCATGCGGGTGCTCAACCGGCTGGAGAGGCAGAATACGTAAGCCGG
196 AAGCCAACCCACGAAACGGGCATGCGGATGCTCAACCAGCCAGAGAGGCAGAATACACAAGCCAA
15315586 GGATCGGCACGATCCCCCCAGCGTGCTGTCAATCCTGCTACCGCAACCCTTGGTCCGA
261 GGATCGGCACGATCCCCCCAGCGTGCTGTCAATCCTGCTACCGCAACCCTTGGTCCGA
* * **
15315644 TCTGATATTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTG
1 TCTGATATTAGACTAGGAATGAACTCCGTACGCATAAGTCAACCCACGAAACGAGCGTACGGGCA
* * * **
15315709 CTGAGCCGA-TAGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCAGTCCCCCTCTGCATGCTG
66 CTGAGCCGACCAAAAGAGGCATAATGCACAAGCCAGGGATCAGCCCAGTCCCCCTCAACATGCTG
* * * *
15315773 CCAGTCCCGCTACCACAACCTTTGGTCTGGCTAGAGCTTAGACATGGAATGAACT-CCCTATGCC
131 CCAGTCCCGCTACCACAACCCTCGGACTGGCTAGAGCTTAGACATGGAATCAA-TGCCCTATGCC
* * * * ** *
15315837 TAAGCCAACTCATGAAATGGGCGTGCGGATGCTCAGTCAGCCAGAGAGGCAGAATGCACAAGCCA
195 TAAGCCAACCCACGAAACGGGCATGCGGATGCTCAACCAGCCAGAGAGGCAGAATACACAAGCCA
15315902 AGGATCGGC
260 AGGATCGGC
15315911 TCAGTCCCCC
Statistics
Matches: 222, Mismatches: 44, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
317 154 0.69
318 68 0.31
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (318 bp):
TCTGATATTAGACTAGGAATGAACTCCGTACGCATAAGTCAACCCACGAAACGAGCGTACGGGCA
CTGAGCCGACCAAAAGAGGCATAATGCACAAGCCAGGGATCAGCCCAGTCCCCCTCAACATGCTG
CCAGTCCCGCTACCACAACCCTCGGACTGGCTAGAGCTTAGACATGGAATCAATGCCCTATGCCT
AAGCCAACCCACGAAACGGGCATGCGGATGCTCAACCAGCCAGAGAGGCAGAATACACAAGCCAA
GGATCGGCACGATCCCCCCAGCGTGCTGTCAATCCTGCTACCGCAACCCTTGGTCCGA
Found at i:15316363 original size:25 final size:26
Alignment explanation
Indices: 15316335--15316383 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15316325 CCGGTCCGAT
15316335 CTTAGAC-TGGAATGAACTCCGTACG
1 CTTAGACATGGAATGAACTCCGTACG
15316360 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
15316384 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:15316376 original size:184 final size:184
Alignment explanation
Indices: 15316175--15316541 Score: 522
Period size: 184 Copynumber: 2.0 Consensus size: 184
15316165 TCTGGCTAGG
* *
15316175 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCGGCGCTCAA
* * *** * * *
15316240 CCGATCGGAGAGGCAGATTGTGGAAGCCGGGGATCGACCCTGTCCCCCCCTGCGTGCTGCCGATC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGT-CCCCCCTGCGTGCTACCGATC
* * *
15316305 CTGCTGCGGCAACCCTCGATCCGGTCCGATCTT-AGACT-GGAATGAACTCCGTAC
130 CTGCTACCGCAACCCTCGATCCGATCCGATCTTGA-ACTAGGAATGAACTCCGTAC
*
15316359 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCGGCGCTCAA
* * * *
15316424 CTGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
* *
15316489 TGCTACCGCAACCCTCGGTCTGATCCGATCTTGAACTAGGAATGAACTCCGTA
131 TGCTACCGCAACCCTCGATCCGATCCGATCTTGAACTAGGAATGAACTCCGTA
15316542 TGCCCCACGA
Statistics
Matches: 161, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
183 50 0.31
184 111 0.69
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCCGGCGCTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
TGCTACCGCAACCCTCGATCCGATCCGATCTTGAACTAGGAATGAACTCCGTAC
Found at i:15317583 original size:26 final size:26
Alignment explanation
Indices: 15317545--15317597 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15317535 GGCTCAAACT
15317545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15317571 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15317597 C
1 C
15317598 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15317988 original size:26 final size:27
Alignment explanation
Indices: 15317950--15318000 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
15317940 ACGGGCGCTC
15317950 AGACTGGGAATGAAC-TCCGTATGCTT
1 AGACTGGGAATGAACTTCCGTATGCTT
* *
15317976 AGACTGGGGATGAGCTTCCGTATGC
1 AGACTGGGAATGAACTTCCGTATGC
15318001 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (27 bp):
AGACTGGGAATGAACTTCCGTATGCTT
Found at i:15318343 original size:26 final size:26
Alignment explanation
Indices: 15318314--15318369 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15318304 CTGGTCCGAT
15318314 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
15318340 CTTAGACTAGGGATGGACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15318366 CTTA
1 CTTA
15318370 AGTCAACCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15320097 original size:159 final size:158
Alignment explanation
Indices: 15319821--15320107 Score: 355
Period size: 159 Copynumber: 1.8 Consensus size: 158
15319811 CAGAATCCGC
* * * * * * *
15319821 AAGCCAGGGATCGACCCGGTCCCTCCTGCATGCTATCGATCTCGGTGCCGCAACCCTCGGTCTGG
1 AAGCCAGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCCACAACCCTCAGTCTGG
* *
15319886 TCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCAACAAAATGAGTGTGCGGGTG
66 TCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACAAAATGAGCGTGCGGGTG
15319951 CTGAGCCGATCGAAAAGCCATAATACGT
131 CTGAGCCGATCGAAAAGCCATAATACGT
* *
15319979 AAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCTG
1 AAGCCAGGGATCGACCCGATCCCCC-CTGCATGCTACCGATCCCGCTGCCACAACCCTCAGTCTG
** ** * **
15320044 GCTGGGA-CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACTC-ATGAAATGAGCGTGCG
65 G-TCCGATCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAAC-CAACAAAATGAGCGTGCG
15320106 GG
127 GG
15320108 CGCTCAACCG
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
158 22 0.21
159 80 0.75
160 5 0.05
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
AAGCCAGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCCACAACCCTCAGTCTGG
TCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACAAAATGAGCGTGCGGGTG
CTGAGCCGATCGAAAAGCCATAATACGT
Found at i:15320147 original size:159 final size:158
Alignment explanation
Indices: 15319827--15320226 Score: 351
Period size: 159 Copynumber: 2.5 Consensus size: 158
15319817 CCGCAAGCCA
* * * * * * *
15319827 GGGATCGACCCGGTCCCTCCTGCATGCTATCGATCTCGGTGCCGCAACCCTCGGTCTGGTCCGAT
1 GGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCCACAACCCTCAGTCTGGTCCGAT
* * * * *
15319892 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCAACAAAATGAGTGTGCGGGTGCTGAGC
66 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACAAAATGAGCGTGCGGGCGCTCAAC
* *
15319957 CGATCGAAAAGCCATAATACGTAAGCCG
131 CGATAGAAAAGCCATAATACGTAAACCG
* **
15319985 GGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCTGGCTGGG
1 GGGATCGACCCGATCCCCC-CTGCATGCTACCGATCCCGCTGCCACAACCCTCAGTCTGG-TCCG
** * **
15320050 A-CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACTC-ATGAAATGAGCGTGCGGGCGCT
64 ATCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAAC-CAACAAAATGAGCGTGCGGGCGCT
*** * * *
15320112 CAACCGATAGGGGAGGCATAATGCGTAAACTG
127 CAACCGATAGAAAAGCCATAATACGTAAACCG
* * * * ** * ** ** * * *
15320144 GGGATCGACCTGGT--CCCCTGCGTGATGTCGATCCTGCTGCCGTAACCCTTGGTCCGATTCGAT
1 GGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCCACAACCCTCAGTCTGGTCCGAT
15320207 CTTAGACTGGGAATGAACTC
66 CTTAGACTGGGAATGAACTC
15320227 TGTATGCTTA
Statistics
Matches: 194, Mismatches: 42, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
155 4 0.02
156 48 0.25
157 3 0.02
158 17 0.09
159 117 0.60
160 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCCACAACCCTCAGTCTGGTCCGAT
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCAACAAAATGAGCGTGCGGGCGCTCAAC
CGATAGAAAAGCCATAATACGTAAACCG
Found at i:15320243 original size:26 final size:26
Alignment explanation
Indices: 15320207--15320259 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15320197 CCGATTCGAT
15320207 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
15320233 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15320259 C
1 C
15320260 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15320870 original size:26 final size:26
Alignment explanation
Indices: 15320841--15320893 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15320831 CCGGTCTGAT
*
15320841 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
15320867 CTTAGACTAGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
15320893 C
1 C
15320894 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:15321003 original size:12 final size:12
Alignment explanation
Indices: 15320986--15321013 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15320976 CCCTCTGCAT
15320986 GCTGTCGATCCC
1 GCTGTCGATCCC
15320998 GCTGTCGATCCC
1 GCTGTCGATCCC
15321010 GCTG
1 GCTG
15321014 CCGGTCCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.39, G:0.29, T:0.25
Consensus pattern (12 bp):
GCTGTCGATCCC
Found at i:15321757 original size:26 final size:26
Alignment explanation
Indices: 15321721--15321773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15321711 CCAATTGGAT
*
15321721 CTTAGATTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGCACTCCGTATG
*
15321747 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGCACTCCGTATG
15321773 C
1 C
15321774 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGCACTCCGTATG
Found at i:15322067 original size:343 final size:338
Alignment explanation
Indices: 15321405--15322700 Score: 1328
Period size: 343 Copynumber: 3.9 Consensus size: 338
15321395 CTGGTCCGAT
*
15321405 CTTAG-ATTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGTTGAGC
1 CTTAGAATGGGAATG-ACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGT-CGGGCGTTGAGC
* * * **
15321469 CTGCC-AGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACCTGCTACCAATC
64 CGGCCGA-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACCTGCTGCCGGTC
*
15321533 CCGCTGCCACAACCCTCGGTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * ** *
15321598 ACCCACGAAATGGGCGTACGGGCGCTCAGCTGATCGGGGAGACAGAATGCGTAAGCCGGGGATCG
193 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCG
*** * * * * * *
15321663 GCCC-AGTCCCCCCTGCGCATTGTCAATCCTGCTTCCGTAACCCTCGGTCCAAT-TGGATCTTAG
258 GCCCGA-TCCCCCCTGCGTGCTGTCGATCCTGCTGCAGCAACCCTC-GTTCGATCT-GATC-TAG
15321726 ATTGGGAATGCACTCCGTATG
319 ATTGGGAATG-ACTCCGTATG
* *
15321747 CTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTCCGGGCGTTGAGC
1 CTTAGAATGGGAATG-ACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGT-CGGGCGTTGAGC
* ** * * * **
15321812 CGGCC-AGAGAGGCATAATGCGTAAGCCAAGGATGGGCCCGATCCCCCTCTACCTACGGGTGGTC
64 CGGCCGA-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACCTGCTGCCGGTC
*
15321876 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
15321941 ACCCACGAAATGAGCTTACGGGCGCTCAGCCGAACGAAGAGGCAGAATGCTTAAGCTGGGGATCG
193 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCG
* *
15322006 GCCCGATCCCCCCTTACGTGGTGTCGATCCTGCTGCAGCAACCCTCGTTCGATCTGATC----TT
258 GCCCGATCCCCCC-TGCGTGCTGTCGATCCTGCTGCAGCAACCCTCGTTCGATCTGATCTAGATT
15322067 ----A-GACT--G---G
322 GGGAATGACTCCGTATG
* * * *
15322074 ----GAAT---AA--ACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGT-GGGTGTTGAGT
1 CTTAGAATGGGAATGACTCCGTATGCCTAAGTCAACCCATGAAACGA--GTGTCGGGCGTTGAGC
* * * **
15322129 CGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTTTACGGGCTGCCGGTCC
64 CGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACCTGCTGCCGGTCC
** *
15322194 CATTGCCACAACACTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
129 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
15322259 CCCATGAAACGGGCG-AGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCG
194 CCCACGAAACGAGCGTA-CGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCG
* * * *
15322323 ACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCA-CAACCCTCGGTCTGATCCGATCCTAGA
258 GCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTG-CAGCAACCCTCGTTC-GATCTGAT-CTAGA
*
15322387 CTGGGAATGATCTCCGTATG
320 TTGGGAATGA-CTCCGTATG
* * * * * ** *
15322407 CTTAGATTGGGGATGAACTCCGTATGCCTAGGTCAACCCATAAAATGAGCATGT-GGGCACTCAG
1 CTTAGAATGGGAATG-ACTCCGTATGCCTAAGTCAACCCATGAAACGAG--TGTCGGGCGTTGAG
* * * * * ** * * * *
15322471 TCGACCTAAGAGGCAAAATGCACAAGCCGGGGATTAGCCC-AGTCCCCCGCTGCGTGCTGTCGGT
63 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCTCTACCTGCTGCCGGT
*
15322535 CCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
127 CCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
15322600 AACCCATGAAACGAGCGTGCAGGCGCTCAGCCCG-TCGAAGAGGTAGAATGCGTAAGCCGAGGAT
192 AACCCACGAAACGAGCGTACGGGCGCTCAG-CCGATCGAAGAGGCAGAATGCGTAAGCCGGGGAT
* *
15322664 TGGCCCGATCCCCCCTGCGTGCTGTAGATCCTGCTGC
256 CGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGC
15322701 TTGTCCTGCT
Statistics
Matches: 795, Mismatches: 118, Indels: 82
0.80 0.12 0.08
Matches are distributed among these distances:
316 31 0.04
317 223 0.28
318 2 0.00
319 4 0.01
320 2 0.00
322 1 0.00
323 3 0.00
326 1 0.00
327 3 0.00
328 2 0.00
330 2 0.00
332 3 0.00
333 2 0.00
334 1 0.00
337 3 0.00
338 2 0.00
340 1 0.00
341 1 0.00
342 7 0.01
343 472 0.59
344 29 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (338 bp):
CTTAGAATGGGAATGACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTCGGGCGTTGAGCCG
GCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACCTGCTGCCGGTCCCG
CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
CGATCCCCCCTGCGTGCTGTCGATCCTGCTGCAGCAACCCTCGTTCGATCTGATCTAGATTGGGA
ATGACTCCGTATG
Found at i:15322148 original size:158 final size:158
Alignment explanation
Indices: 15321746--15322407 Score: 581
Period size: 159 Copynumber: 4.2 Consensus size: 158
15321736 CACTCCGTAT
* * * * * * *
15321746 GCTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTCCGGGCGTTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *** *
15321811 CCGGCC-AGAGAGGCATAATGCGTAAGCCAAGGATGGGCCCGATCCCCCTCTACCTACGGGTG--
66 CCGACCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCC-CT---TACGGGTGTC
*
15321873 G-TCCCGCTGCCACAACCCTCGGTCTGGCTGGG
126 GATCCCGCTGCCACAACCCTCGGTCTGGCTGGA
* * * * *
15321905 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* **
15321969 GCCGAACGAAGAGGCAGAATGCTTAAGCTGGGGATCGGCCCGATCCCCCCTTACGTGGTGTCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTTACG-GGTGTCGAT
* * *
15322034 CCTGCTG-CAGCAACCCTCGTTC-GATCT-GA
129 CCCGCTGCCA-CAACCCTCGGTCTG-GCTGGA
* * * * * * * * *
15322063 TCTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGTGGGTGTTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15322128 TCGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTTTACGGGCTGCCGGTC
66 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTTACGGG-TGTCGATC
** * * *
15322193 CCATTGCCACAACACTCGGTCCGGCTGGG
130 CCGCTGCCACAACCCTCGGTCTGGCTGGA
* * *
15322222 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGAGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
15322286 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCC-TGCGTGCTGTCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTTACG-GGTGTCGAT
* * *
15322350 CCTGCTGCCACAACCCTCGGTCT-GATCCGA
129 CCCGCTGCCACAACCCTCGGTCTGGCT-GGA
* * *
15322380 TCCTAGACTGGGAATGATCTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
15322408 TTAGATTGGG
Statistics
Matches: 397, Mismatches: 89, Indels: 35
0.76 0.17 0.07
Matches are distributed among these distances:
155 4 0.01
156 4 0.01
157 6 0.02
158 173 0.44
159 207 0.52
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTTACGGGTGTCGATCC
CGCTGCCACAACCCTCGGTCTGGCTGGA
Found at i:15322322 original size:317 final size:317
Alignment explanation
Indices: 15321747--15322407 Score: 871
Period size: 317 Copynumber: 2.1 Consensus size: 317
15321737 ACTCCGTATG
* * * *
15321747 CTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTCCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTCCGGGCGTTGAGC
* * * **
15321812 CGGCCAGAGAGGCATAATGCGTAAGCCAAGGATGGGCCCGATCCCCCTCTACCTACGGGTGGTCC
66 CGGCCAGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACCGACGGCCGGTCC
* * *
15321877 CGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACACTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * ** *
15321942 CCCACGAAATGAGCTTACGGGCGCTCAGCCGAACGAAGAGGCAGAATGCTTAAGCTGGGGATCGG
196 CCCACGAAACGAGCTGACGGGCGCTCAGCCGAACGAAGAGGCAGAATGCGCAAGCTGGGGATCGA
* * *
15322007 CCCGATCCCCCCTTACGTGGTGTCGATCCTGCTG-CAGCAACCCTCGTTC-GATCTGAT
261 CCCGATCCCCCC-TACGTGCTGTCGATCCTGCTGCCA-CAACCCTCGGTCTGATCCGAT
* * ** * *
15322064 CTTAGACTGGGAATAAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGTGGGTGTTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTCCGGGCGTTGAGC
*** * * * * *
15322129 CGGCC-GAAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTTTACGGGCTGCCGGTC
66 CGGCCAG-AGAGGCATAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACCGACGGCCGGTC
*
15322193 CCATTGCCACAACACTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCACTGCCACAACACTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
15322258 ACCCATGAAACGGGC-GAGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATC
195 ACCCACGAAACGAGCTGA-CGGGCGCTCAGCCGAACGAAGAGGCAGAATGCGCAAGCTGGGGATC
* *
15322322 GACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGAT
259 GACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGAT
* *
15322381 CCTAGACTGGGAATGATCTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15322408 TTAGATTGGG
Statistics
Matches: 296, Mismatches: 44, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
316 32 0.11
317 264 0.89
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTCCGGGCGTTGAGC
CGGCCAGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACCGACGGCCGGTCC
CACTGCCACAACACTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCTGACGGGCGCTCAGCCGAACGAAGAGGCAGAATGCGCAAGCTGGGGATCGA
CCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGAT
Found at i:15322412 original size:26 final size:26
Alignment explanation
Indices: 15322383--15322433 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15322373 GATCCGATCC
*
15322383 TAGACTGGGAATGATCTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
15322409 TAGATTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15322434 CTAGGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15322627 original size:660 final size:657
Alignment explanation
Indices: 15321246--15322700 Score: 1778
Period size: 660 Copynumber: 2.2 Consensus size: 657
15321236 AACTCCGTAT
** * *
15321246 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15321311 CCGGCCGGATAGGCAGAATGCGTAAG-TCAGGGATCGACCCGGTCACCCCTGT-GTGTTGTCGAT
66 CC-GACGAAGAGGCAGAATGCGTAAGCT-GGGGATCGGCCCGATCCCCCCT-TCGTGCTGTCGAT
* * * * * * *
15321374 CCTGCTACTGCAACCCTTGGTCTGGTCCGATCTTAGATTGGAATGAACTCCGTATGCCTAAGTCA
128 CCTGCTGCAGCAACCCTCGGTCTGATCCGATCTTAGATGGGAATAAACTCCGTATGCATAAGTCA
* * *
15321439 ACCCATGAAACGAGTGTACGGGCGTTGAGCCTGCCAGAGAGGCATAATGCGCAAGCTGGGGATCG
193 ACCCAAGAAACGAGCGTACGGGCGTTGAGCCGGCCAGAGAGGCATAATGCGCAAGCTGGGGATCG
* * * *
15321504 GCCCGATCCCCCTCTACCTGCTACCAATCCCGCTGCCACAACCCTCGGTCCGTCTGGGGCTTAGA
258 GCCCGATCCCCCTCTACCGGCTACCAATCCCACTGCCACAACACTCGGTCCGGCTGGGGCTTAGA
* * *
15321569 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAGCTGATCG
323 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGACCG
* * * * *
15321634 GGGAGACAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCCTGCGCATTGTCAATCCTGCTTCC
388 GAGAGACAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGCACTGTCAATCCTGCTGCC
** ** * * *
15321699 GTAACCCTCGGTCCAATTGGATCTTAGATTGGGAATGCACTCCGTATGCTTAGACTGGGAATGTA
453 ACAACCCTCGGTCCAATCCGATCCTAGACTGGGAATGCACTCCGTATGCTTAGACTGGGAATGAA
* ** * * *
15321764 CTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTCCGGGCGTTGAGCCGGCCAGAGAGGCATAA
518 CTCCGTATGCCTAAGTCAACCCATAAAACAAGTGT-CGGGCACTCAGCCGACCAGAGAGGCAAAA
** * * *
15321829 TGCGTAAGCCAAGGATGGGCCCGATCCCCCTCTACCTACGGGTGGTCCCGCTGCCACAACCCTCG
582 TGCACAAGCCAAGGATGAGCCCGATCCCCCGCTACCTACGGGTGGTCCCGCTGCCACAACCCTCA
*
15321894 GTCTGGCTGGG
647 GTCCGGCTGGG
* * *
15321905 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
15321970 CCGAACGAAGAGGCAGAATGCTTAAGCTGGGGATCGGCCCGATCCCCCCTTACGTGGTGTCGATC
66 CCG-ACGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTT-CGTGCTGTCGATC
* *
15322035 CTGCTGCAGCAACCCTCGTTC-GATCTGATCTTAGACTGGGAATAAACTCCGTATGCATAAGTCA
129 CTGCTGCAGCAACCCTCGGTCTGATCCGATCTTAGA-TGGGAATAAACTCCGTATGCATAAGTCA
** * *
15322099 ACCCAAGAAACGAGCGTGTGGGTGTTGAGTCGGCC-GAAGAGGCATAATGCGCAAGCTGGGGATC
193 ACCCAAGAAACGAGCGTACGGGCGTTGAGCCGGCCAG-AGAGGCATAATGCGCAAGCTGGGGATC
* * * * ** *
15322163 GGCTCGATCCCCCTTTACGGGCTGCCGGTCCCATTGCCACAACACTCGGTCCGGCTGGGGCTTAG
257 GGCCCGATCCCCCTCTACCGGCTACCAATCCCACTGCCACAACACTCGGTCCGGCTGGGGCTTAG
*
15322228 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCG-AGCGGGCGCTCAGCCGAC
322 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTA-CGGGCGCTCAGCCGAC
* * * ** *
15322292 CGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTG
386 CGGAGAGACAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGCACTGTCAATCCTGCTG
** * *
15322357 CCACAACCCTCGGTCTGATCCGATCCTAGACTGGGAATG-ATCTCCGTATGCTTAGATTGGGGAT
451 CCACAACCCTCGGTCCAATCCGATCCTAGACTGGGAATGCA-CTCCGTATGCTTAGACTGGGAAT
* ** *
15322421 GAACTCCGTATGCCTAGGTCAACCCATAAAATGAGCATGT-GGGCACTCAGTCGACCTA-AGAGG
515 GAACTCCGTATGCCTAAGTCAACCCATAAAACAAG--TGTCGGGCACTCAGCCGACC-AGAGAGG
** * * * * *
15322484 CAAAATGCACAAGCCGGGGATTAGCCC-AGTCCCCCGCTGCGTGC-TGTCGGTCCCGCTGCCACA
577 CAAAATGCACAAGCCAAGGATGAGCCCGA-TCCCCCGCTACCTACGGGT-GGTCCCGCTGCCACA
15322547 ACCCTCAGTCCGGCTGGG
640 ACCCTCAGTCCGGCTGGG
* *
15322565 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
15322630 CCCGTCGAAGAGGTAGAATGCGTAAGCCGAGGATTGGCCCGATCCCCCCTGCGTGCTGTAGATCC
66 -CCGACGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTTCGTGCTGTCGATCC
15322695 TGCTGC
130 TGCTGC
15322701 TTGTCCTGCT
Statistics
Matches: 676, Mismatches: 106, Indels: 28
0.83 0.13 0.03
Matches are distributed among these distances:
658 2 0.00
659 132 0.20
660 535 0.79
661 4 0.01
662 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (657 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTTCGTGCTGTCGATCCT
GCTGCAGCAACCCTCGGTCTGATCCGATCTTAGATGGGAATAAACTCCGTATGCATAAGTCAACC
CAAGAAACGAGCGTACGGGCGTTGAGCCGGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGGCC
CGATCCCCCTCTACCGGCTACCAATCCCACTGCCACAACACTCGGTCCGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGACCGGAG
AGACAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGCACTGTCAATCCTGCTGCCACA
ACCCTCGGTCCAATCCGATCCTAGACTGGGAATGCACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCATAAAACAAGTGTCGGGCACTCAGCCGACCAGAGAGGCAAAATGCA
CAAGCCAAGGATGAGCCCGATCCCCCGCTACCTACGGGTGGTCCCGCTGCCACAACCCTCAGTCC
GGCTGGG
Found at i:15322778 original size:26 final size:26
Alignment explanation
Indices: 15322736--15322788 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15322726 CCAGACCGAT
* *
15322736 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15322762 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15322788 C
1 C
15322789 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15323568 original size:26 final size:26
Alignment explanation
Indices: 15323539--15323591 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15323529 CCAATCCGAT
15323539 CTTAGACT-GGGAATGAACTCCGCATG
1 CTTAGA-TGGGGAATGAACTCCGCATG
* *
15323565 CTTAGATGGGGGATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGCATG
15323591 C
1 C
15323592 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGCATG
Found at i:15323862 original size:170 final size:170
Alignment explanation
Indices: 15323577--15323889 Score: 423
Period size: 170 Copynumber: 1.8 Consensus size: 170
15323567 TAGATGGGGG
* *
15323577 ATGAACTCCGTATGCCTCAGTCAACCCACAAAACGAGCATACGGGTGCTCAGTCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAGTCGATCGGAGAGG
* * ** * *
15323642 CATAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGAT-CTCGCTG-TCGGT
66 CAGAATGCGCAAGCCGAGGATCAGCCCAATCCCCCTCTGCATGATGCCGATCCT-GCTGCT-GGT
*
15323705 CCTACTGCAACAACCCTTCGTCGGCTGGGGCTTGGACATGGA
129 CCTACTACAACAACCCTTCGTCGGCTGGGGCTTGGACATGGA
* * ** *
15323747 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAGTCGATCGGAGAGG
* * * *
15323812 CAGAATGCGCAAGCCGGGGATCAGCTCAATTCCCCTCTGTATGATGCCGATCCTGCTGCTGGTCC
66 CAGAATGCGCAAGCCGAGGATCAGCCCAATCCCCCTCTGCATGATGCCGATCCTGCTGCTGGTCC
*
15323877 TACTACCACAACC
131 TACTACAACAACC
15323890 ATCGGTCCGG
Statistics
Matches: 122, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
170 119 0.98
171 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (170 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAGTCGATCGGAGAGG
CAGAATGCGCAAGCCGAGGATCAGCCCAATCCCCCTCTGCATGATGCCGATCCTGCTGCTGGTCC
TACTACAACAACCCTTCGTCGGCTGGGGCTTGGACATGGA
Found at i:15323935 original size:26 final size:26
Alignment explanation
Indices: 15323906--15323958 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15323896 CCGGTCTAAT
*
15323906 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
15323932 CTTAGACATGGAATGAAATCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
15323958 C
1 C
15323959 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:15325150 original size:26 final size:26
Alignment explanation
Indices: 15325112--15325163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15325102 GGCTCAAAAT
15325112 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15325138 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
15325164 GCCTTATGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15326699 original size:158 final size:157
Alignment explanation
Indices: 15326187--15326751 Score: 557
Period size: 159 Copynumber: 3.6 Consensus size: 157
15326177 ACTCCGTATG
* * *
15326187 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGTGCTCAG-
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * *
15326251 CTG-CCGGAGAGGCAGAATGTGCAAGCCAGGGATTGGCTCGGTCCCCCCTGTGTGCTGTCGATCC
65 C-GACCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTATGTGCTGTCGATCC
*
15326315 TGCTACCACAACCCTTGGTCCGGTCCGAT
129 TGCTACCACAACCCTTGGTCCGATCCGAT
* * * *
15326344 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTGAGT
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * ** * * * * * **
15326409 CAATCAAAGAGGCATAATGCGCAAGCCGGGGATTAGCCCGGT-CCACCTCTGCATGCTACCGATC
65 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTATG--TGCTGTCGATC
* * * * **
15326473 CCGCTGCCACAACCCTCGGTCCGA-CTGGGG
128 CTGCTACCACAACCCTTGGTCCGATC-CGAT
* * * * *
15326503 CTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGT
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * *
15326568 CGACCGGAGAGGCAGAATGCGCCAGTCAGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCCT
65 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTATGTGCTGTCGATCCT
* ** *
15326633 GTTACCGTAACCCTTGGTCTC-ATCCAAT
130 GCTACCACAACCCTTGGTC-CGATCCGAT
* * ** ** *
15326661 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGACGCTCA-C
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * *
15326725 CGACCAGAAAGGCAGGATGCGCAAGCC
65 CGACCGGAGAGGCAGAATGCGCAAGCC
15326752 GAGGATCGAA
Statistics
Matches: 320, Mismatches: 77, Indels: 22
0.76 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 85 0.27
158 108 0.34
159 118 0.37
160 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTC
GACCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTATGTGCTGTCGATCCTG
CTACCACAACCCTTGGTCCGATCCGAT
Found at i:15330068 original size:26 final size:26
Alignment explanation
Indices: 15330027--15330079 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15330017 TCGGTCCAAT
*
15330027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
15330053 CTTAGACTGAGG-ATGAACCCCGTATG
1 CTTAGACTG-GGAATGAACCCCGTATG
15330079 C
1 C
15330080 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:15331038 original size:26 final size:26
Alignment explanation
Indices: 15331009--15331061 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15330999 CCGGTCTGAT
* *
15331009 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
15331035 CTTAGACTGGGGATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
15331061 C
1 C
15331062 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Done.