Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 122 of 402
Found at i:15331749 original size:26 final size:26
Alignment explanation
Indices: 15331720--15331772 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15331710 CCGGTTTGAT
15331720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15331746 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15331772 C
1 C
15331773 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15332617 original size:159 final size:158
Alignment explanation
Indices: 15332183--15332690 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 158
15332173 CTGTCGATCC
* *
15332183 TGCTGTCGGTCCTACTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGGTCCTACTACCACAACCCTCGATCTCACTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * *
15332248 TGCCTAAGCCAACCCATGCAACGATG-GTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCGTA
66 TGCCTAAGCCAACCCACGAAAC-AAGCGTGCGGGTGCTCAGCCGACCGGAGAGGC-GAATGCGCA
*
15332312 AGCCAGGGATTAGCCCGGTCCCCTCCTACA
129 AGCCAGGGATTAGCCCGATCCCCTCCTACA
** * ** ** *
15332342 TGCTGTCTATCCTGCTACTGCAACCCTC-AGTC-CGATCT-GATCTTAGAC-TGAGAATGAGCTC
1 TGCTGTCGGTCCTACTACCACAACCCTCGA-TCTC-A-CTGGGGCTTAGACATG-GAATGAACTC
* * * * * * *
15332403 CGTATGCCTAAGTCAACCCACGAAATAAGCGTACGGGCGTTAAGCC-AGCCAGAGAGGCGTAATG
62 CGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGA-CCGGAGAGGCG-AATG
* * *
15332467 CGCAAGCC-GAGGATTGGCCCGATCCCC-CTCTGCT
125 CGCAAGCCAG-GGATTAGCCCGATCCCCTC-CTACA
* * * *
15332501 TGTTGTCGGTCCCAC-AGCCACAACCCTCGATCTCACTGGGGCTCAGACATGGAATGAACTCCCT
1 TGCTGTCGGTCCTACTA-CCACAACCCTCGATCTCACTGGGGCTTAGACATGGAATGAACTCCGT
* * * *
15332565 ATGCCTAAGCCAACCCACGAAACAAGCGTGCAGATGCTCAGCCGACTGGAGAGGTAGAATGCGCA
65 ATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAGAGG-CGAATGCGCA
** * *
15332630 AGTTAGGGA-TCGACCC-AGTCCCC-CCTACG
129 AGCCAGGGATTAG-CCCGA-TCCCCTCCTACA
* * **
15332659 TGCTATCGATCCTACTACCGTAACCCTCGATC
1 TGCTGTCGGTCCTACTACCACAACCCTCGATC
15332691 CGGTCTGATC
Statistics
Matches: 269, Mismatches: 60, Indels: 41
0.73 0.16 0.11
Matches are distributed among these distances:
158 41 0.15
159 219 0.81
160 9 0.03
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
TGCTGTCGGTCCTACTACCACAACCCTCGATCTCACTGGGGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCGAATGCGCAAG
CCAGGGATTAGCCCGATCCCCTCCTACA
Found at i:15332729 original size:26 final size:26
Alignment explanation
Indices: 15332700--15332752 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15332690 CCGGTCTGAT
* *
15332700 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
15332726 CTTAGACTGGGGATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
15332752 C
1 C
15332753 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:15333440 original size:26 final size:26
Alignment explanation
Indices: 15333411--15333463 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15333401 CCGGTTTGAT
15333411 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15333437 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15333463 C
1 C
15333464 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15333526 original size:343 final size:341
Alignment explanation
Indices: 15332383--15333835 Score: 1141
Period size: 355 Copynumber: 4.1 Consensus size: 341
15332373 CCGATCTGAT
* * * * *
15332383 CTTAGACTGAGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTACGGGCG-TTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAA-
* * ** * * *
15332447 CCAGCCA-GAGAGGCGTAATGCGCAAGCCGAGGATTGGCCCGATCCCCCTCTGCTTGTTGTCGGT
65 CC-GACAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGT
** * * *
15332511 CCCAC-AGCCACAACCCTCGATCTCACTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGC
129 CCTGCTA-CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * ** * **
15332575 CAACCCACGAAACAAGCGTGCAGATGCTCAGCCGACTGGAGAGGTAGAATGCGCAAGTTAGGGAT
193 CAACCCATGAAACGAGCGTGCAGGCGCTCAGCC-ACCGGAGAGGTAGAATGCGCAAGTCGGGGAT
* ** *
15332640 CGACCCAGTCCCCCCTACGTGCTATCGATCCTACTACCGTAACCCTCGATCCGGTCTGATCTTAG
257 CG-CCCAGTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAG
15332705 ACTGGGAATGAACTCTGTATG
321 ACTGGGAATGAACTCTGTATG
* * * * *
15332726 CTTAGACTGGGGATGAACGCCGTATGCCTAAGTCAACCCATGAAACGAA-CGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTACGGGTGCTCAA
* * * *
15332790 TCGACCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCAGATCCCCTTCTGCATGCTGTCGATC
65 CCGACAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCC--CT-C-TGC-GT-G---
* * * * *
15332855 CCACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTTCGT
121 ---CTGCCGGTCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCT
* ** * * *
15332920 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAAAGAGGCAAAATGCACA
183 ATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCA-CCGGAGAGGTAGAATGCGCA
* *
15332985 AGTCGGGGATCAGCCCAGTCCCCCCCTGCGTGCTGA-CAATCCTGCTGGTGGTCTTGTTGTCGGA
247 AGTCGGGGATC-GCCCAGT-CCCCCCTACGTGCT-ATCGATCCTGC---T-GTC-----G-C--A
* * * * *
15333049 ACCCTCTG-TCTGATCTGATCTTAGACTAGGAATGAACTCTATATT
297 ACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
* * * * * * *
15333094 CTTAGACAT-GAAATGAACACCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAA
* * * * * * * *
15333158 CCGATC-GGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
65 CCGA-CAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGT
* * * *
15333222 CTTGCTACAACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * *
15333287 AACCCATGAAATG-GACGTGCAGGCACTCAGCCTACCGGAGATGTAGAATGCGCAAGCCGGGGAT
194 AACCCATGAAACGAG-CGTGCAGGCGCTCAGCC-ACCGGAGAGGTAGAATGCGCAAGTCGGGGAT
* * *
15333351 CGGTCC-GATCCCCCCTACGTGCTTTCGATCCTGCTGTCGCAACCCTCGATCCGGTTTGATCTTA
257 C-GCCCAG-TCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTA
*
15333415 GACTGGGAATGAACTCCGTATG
320 GACTGGGAATGAACTCTGTATG
* * * *
15333437 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGGTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAAC
** *
15333502 CGGTAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTCTGCGTGCTGTCGATGT
66 CGACAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGAT--CCC-C--C-T-CTG-C---GT
* * ** *
15333567 CGCTGCCGGTCCTACTACCACAACCCAT-GGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGT
120 -GCTGCCGGTCCTGCTACCACAACCC-TCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * * * * * * *
15333631 ATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTCAGCCAACCGGAGGGGCAAAAT-CTAC
183 ATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC-ACCGGAGAGGTAGAATGC-GC
* * * * ** * *
15333695 AAGCCGAGGATCGGCTCGGTCCCCCACTGTGTGCTGTTAATCCTGCTACTGGTCCTGCTACTGCA
246 AAGTCGGGGATC-GCCCAGTCCCCC-CTACGTGC---T-AT-C-GATCCT-G--CTG-T-C-GCA
*
15333760 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
297 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
* * *
15333805 CATAGACAT-GGAATGAACTCCATATGTCTAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAA
15333836 CTCGGGGATC
Statistics
Matches: 878, Mismatches: 159, Indels: 121
0.76 0.14 0.10
Matches are distributed among these distances:
342 4 0.00
343 205 0.23
344 4 0.00
345 6 0.01
346 3 0.00
347 3 0.00
348 2 0.00
349 2 0.00
350 3 0.00
351 4 0.00
352 1 0.00
354 4 0.00
355 258 0.29
356 147 0.17
357 2 0.00
359 2 0.00
360 2 0.00
361 1 0.00
362 5 0.01
363 3 0.00
364 3 0.00
365 5 0.01
366 3 0.00
367 3 0.00
368 199 0.23
369 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAAC
CGACAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGTCC
TGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACGAGCGTGCAGGCGCTCAGCCACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGCC
CAGTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
GAATGAACTCTGTATG
Found at i:15333765 original size:711 final size:711
Alignment explanation
Indices: 15332520--15333822 Score: 1817
Period size: 711 Copynumber: 1.8 Consensus size: 711
15332510 TCCCACAGCC
*
15332520 ACAACCCTCGATCTCACTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 ACAACCCTCGATCTCACTAGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
** * **
15332585 AACAAGCGTGCAGATGCTCAGCCGACTGGAGAGGTAGAATGCGCAAGTTAGGGATCGACCCAGTC
66 AACAAGCGTGCAGACACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCAGTC
*
15332650 CCCCCTACGTGCTATCGATCCTACTACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
131 CCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
* * *
15332715 AACTCTGTATGCTTAGACTGGGGATGAACGCCGTATGCCTAAGTCAACCCATGAAACGAACGTGC
196 AACTCCGTATGCTTAGACTGGGGATGAACGCCGTATGCCTAAGTCAACCCACGAAACGAACGTAC
* * * *
15332780 GGGTGCTCAGTCGACCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCAGATCCCCTTCTGCAT
261 GGGTGCTCAATCGACAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCAGATCCCCCTCTGCAT
* *
15332845 GCTGTCGATCCCACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAA
326 GCTGTCGATCCCACTGCCGGTCCTACTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAA
* * * * * *
15332910 TGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAAAGAGGC
391 TGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTCAGCCAACCAAAGAGGC
* * * ** *
15332975 AAAATGCACAAGTCGGGGATCAGCCCAGTCCCCCCCTGCGTGCTGACAATCCTGCTGGTGGTCTT
456 AAAATGCACAAGCCGAGGATCAGCCCAGTCCCCCACTGCGTGCTGACAATCCTGCTACTGGTCCT
** * * * * *
15333040 GTTGTCGGAACCCTCTG-TCTGATCTGATCTTAGACTAGGAATGAACTCTATATTCTTAGACATG
521 GTACTCGCAACCCTC-GATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCATAGACATG
15333104 AAATGAACACCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGA
585 AAATGAACACCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGA
15333169 GGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCTTGCTACA
650 GGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCTTGCTACA
* ** * *
15333231 ACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 ACAACCCTCGATCTCACTAGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
** * * * * **
15333296 AA-TGGACGTGCAGGCACTCAGCCTACCGGAGATGTAGAATGCGCAAGCCGGGGATCGGTCC-GA
66 AACAAG-CGTGCAGACACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCAG-
* * ** *
15333359 TCCCCCCTACGTGCTTTCGATCCTGCTGTCGCAACCCTCGATCCGGTTTGATCTTAGACTGGGAA
129 TCCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
* *
15333424 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
194 TGAACTCCGTATGCTTAGACTGGGGATGAACGCCGTATGCCTAAGTCAACCCACGAAACGAACGT
* ** *
15333489 ACGGGTGGTCAATCGGTAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTCTGC
259 ACGGGTGCTCAATCGACAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCAGATCCCCCTCTGC
* ** * *
15333554 GTGCTGTCGATGTCGCTGCCGGTCCTACTACCACAACCCAT-GGTCCGGTTGGGGCTTAGACATG
324 ATGCTGTCGATCCCACTGCCGGTCCTACTACCACAACCC-TCGGTCCGATTGGGGCTTAGACATG
** *
15333618 GAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTCAGCCAACCGGAGG
388 GAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTCAGCCAACCAAAGA
* * * * **
15333683 GGCAAAAT-CTACAAGCCGAGGATCGGCTCGGTCCCCCACTGTGTGCTGTTAATCCTGCTACTGG
453 GGCAAAATGC-ACAAGCCGAGGATCAGCCCAGTCCCCCACTGCGTGCTGACAATCCTGCTACTGG
* * *
15333747 TCCTGCTACT-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGA
517 TCCTG-TACTCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCATAGA
*
15333811 CATGGAATGAAC
581 CATGAAATGAAC
15333823 TCCATATGTC
Statistics
Matches: 509, Mismatches: 77, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
710 4 0.01
711 502 0.99
712 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (711 bp):
ACAACCCTCGATCTCACTAGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACAAGCGTGCAGACACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCAGTC
CCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACGCCGTATGCCTAAGTCAACCCACGAAACGAACGTAC
GGGTGCTCAATCGACAGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCAGATCCCCCTCTGCAT
GCTGTCGATCCCACTGCCGGTCCTACTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAA
TGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATACGGGCGCTCAGCCAACCAAAGAGGC
AAAATGCACAAGCCGAGGATCAGCCCAGTCCCCCACTGCGTGCTGACAATCCTGCTACTGGTCCT
GTACTCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCATAGACATGA
AATGAACACCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGAG
GTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCTTGCTACA
Found at i:15334287 original size:159 final size:160
Alignment explanation
Indices: 15333893--15334420 Score: 413
Period size: 159 Copynumber: 3.3 Consensus size: 160
15333883 CGGTCCTACT
*
15333893 GCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * * * *
15333958 TGCAACGATG-GTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATTAGCCC
66 CGAAAC-AAGCGTGCGGGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGCCAAGGATGAGCCC
* * * *
15334022 GGTCCCCTCCTACATGCTGTCTATCCTGCTA
130 GATCCCCTCCTACATGCTGCCGATCCCGCTA
** * ** * * *
15334053 -CTGCAACCCTCAGTCCGATCT--GATTGTAGAC-TGAGAATGAGCTTCGTATGCCTAAGTCAAC
1 GCCACAACCCTCGGTCCGA-CTGGGGCT-TAGACATG-GAATGAACTCCGTATGCCTAAGCCAAC
** * *
15334114 CCACGAAATGAGCGTACGGGCGCTAAGCCCG-CCAGAGAGGC-GTAATGCGCAAGTCAAGGATCG
63 CCACGAAACAAGCGTGCGGGCGCTAAG-CCGACCAGAGAGGCAG-AATGCGCAAGCCAAGGAT-G
* * *
15334177 A-CCTGATCCCC-CTCTACTTGCTGCCGGTCCCGC-A
125 AGCCCGATCCCCTC-CTACATGCTGCCGATCCCGCTA
*
15334211 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * ***
15334276 CGAAACAAGCGTGCGGGTGCTCAA-CCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGA-CC
66 CGAAACAAGCGTGCGGGCGCT-AAGCCGACCAGAGAGGCAGAATGCGCAAGCCAAGGAT-GAGCC
* * ** *
15334339 CGGTCCCC-CCTGCATGCTATCGATCCTGCT-
129 CGATCCCCTCCTACATGCTGCCGATCCCGCTA
* * **
15334369 GCCATAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCCACAACCCTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCGTATGC
15334421 TTAGACTGGG
Statistics
Matches: 287, Mismatches: 63, Indels: 38
0.74 0.16 0.10
Matches are distributed among these distances:
157 1 0.00
158 68 0.24
159 206 0.72
160 12 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (160 bp):
GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACAAGCGTGCGGGCGCTAAGCCGACCAGAGAGGCAGAATGCGCAAGCCAAGGATGAGCCCG
ATCCCCTCCTACATGCTGCCGATCCCGCTA
Found at i:15334423 original size:26 final size:26
Alignment explanation
Indices: 15334394--15334446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15334384 CCGGTCTGAT
15334394 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15334420 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15334446 C
1 C
15334447 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15334722 original size:355 final size:350
Alignment explanation
Indices: 15334079--15335347 Score: 1054
Period size: 355 Copynumber: 3.6 Consensus size: 350
15334069 GATCTGATTG
* * * * ** *
15334079 TAGACTGAGAATGAGCTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCT-AAGCC
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAA-CC
* * * * * * * *
15334143 CGCCAGAGAGGCGTAATGCGCAAGTCAAGGATC-GACCTGATCCCC--CT-CTAC--T--T--GC
65 GGCCGGAGAGGCATAATGCACAAGCCGAGGATCAG-CCAGATCCCCTTCTGCTGCTGTCATCCGC
*
15334198 TGCCGGTCCCGC-AGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
129 TGCCGGTCCTGCTA-CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* ** ** ** *
15334262 CCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGC
193 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAAAGAGGTAGAATGCACAAGC
* * * *
15334327 TGGGGATCGACCCGGTCCCCCCTGCATGCTATCGATCCTGCTGCCATAACCCTCGGTCCGGTCTG
258 -AGGGATCG-CCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTG
15334392 ATCTTAGACTGGGAATGAACTCCGTATGCT
321 ATCTTAGACTGGGAATGAACTCCGTATGCT
* * **
15334422 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGCACTCAGTCG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCG
* *
15334487 GCCAGAGAGGCATAATGCACAAGCCGAGGATCAGCCAGATCCCCTTCTGCATGCTGTCAATCCCT
66 GCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCAGATCCCCTTCTGC-TGCTGTC-AT-CCG
* * * * * *
15334552 CTGCCTGTCCTGCTGCCACAAACCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTTCGTATG
128 CTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
*
15334617 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGGCCAAAGAGGTAGAATGCACAAGT
193 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAAAGAGGTAGAATGCACAAG-
** * *
15334682 CAGGGATCAGCCCAATCCCCCCTGCGTGCTGCCAATCCTGCTACTGGTCCTGTTGTCGGAACCCT
257 CAGGGATC-GCCCGGTCCCCCCTGCGTGCTACCGATCCTG---CT-G-CC----GT---AACCCT
* *
15334747 CTGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCT
309 CGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * * *
15334789 TAGACAT-GGAATGAACCCCGTATGCCTAAGCCAACCCTCAAAACAAGCATGCAGGCGCTCAACC
1 TAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACC
* * * * ** * *
15334853 GACCGGAGATGCAGAATG-AGCAAGCCGGGGATTGGCCCGGTCCCC--CT-CTGC-G---T--GC
65 GGCCGGAGAGGCATAATGCA-CAAGCCGAGGATCAGCCAGATCCCCTTCTGCTGCTGTCATCCGC
* * * *
15334908 TGCCGATCTTGCTACAACAACCCTCGGTCC-AGCTGGGG-TT-TACATGGAATGAACTCCCTATG
129 TGCCGGTCCTGCTACCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATG
** * * * * * **
15334970 CCTAAGTTAACCCATGAAACG-GTTGTGTGGGCACTCAGCCTGCCAGAA-AGGTAGAATGCGTAA
193 CCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCAACCGGCCA-AAGAGGTAGAATGCACAA
* * * * * * * * * *
15335033 GCCGAGGATCGGTCCGGT-CCCCCTACGTGCTTCCGATCTTGCTACCGCAACCCTCGATCTGAT-
256 GCAG-GGATC-GCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTC
15335096 TCGATCTTAGACTGGGAATGAACTCCGTATGCT
319 T-GATCTTAGACTGGGAATGAACTCCGTATGCT
* ** ** *
15335129 TAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTATGGGTGCTCAACCG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCG
* ** * *
15335194 GTCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCTGAT-CCCTCTCTGCGTGCTATCGATGCC
66 GCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCAGATCCCCT-TCTGC-TGCTGTC-AT-CC
* * * ** * *
15335258 GCTGTCGGTCCTACTACCACAACCCAT-GGTCTGGTTGGGGCTTAAACATGGAATGAACTCCGTA
127 GCTGCCGGTCCTGCTACCACAACCC-TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* *
15335322 TGCCTAAGCAAACCCACAAAACGAGC
191 TGCCTAAGCCAACCCACGAAACGAGC
15335348 ATACGGGTGC
Statistics
Matches: 730, Mismatches: 140, Indels: 101
0.75 0.14 0.10
Matches are distributed among these distances:
339 5 0.01
340 119 0.16
342 2 0.00
343 90 0.12
344 5 0.01
345 2 0.00
346 1 0.00
347 4 0.01
349 4 0.01
352 52 0.07
353 82 0.11
354 42 0.06
355 173 0.24
356 2 0.00
358 3 0.00
359 1 0.00
360 2 0.00
362 1 0.00
363 3 0.00
364 2 0.00
365 2 0.00
366 1 0.00
367 131 0.18
368 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (350 bp):
TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCG
GCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCAGATCCCCTTCTGCTGCTGTCATCCGCTG
CCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAAAGAGGTAGAATGCACAAGCAGG
GATCGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCT
Found at i:15334790 original size:26 final size:26
Alignment explanation
Indices: 15334761--15334813 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15334751 CCGGTCTGAT
*
15334761 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACCCCGTATG
15334787 CTTAGACATGGAATGAACCCCGTATG
1 CTTAGACATGGAATGAACCCCGTATG
15334813 C
1 C
15334814 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCCGTATG
Found at i:15335137 original size:26 final size:26
Alignment explanation
Indices: 15335101--15335153 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15335091 CTGATTCGAT
*
15335101 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15335127 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15335153 C
1 C
15335154 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15335976 original size:159 final size:158
Alignment explanation
Indices: 15335766--15336075 Score: 354
Period size: 159 Copynumber: 2.0 Consensus size: 158
15335756 CCGATCTGAT
* * **
15335766 CTTAGACTGAGAATGAGCTCCATATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTAAAC
1 CTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTAAAC
** * * * * *
15335831 CGGCCAGAGAGG-GGTAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACTTGCTGCCGGTC
66 CAACCAGAGAGGCAG-AATGCGCAAGTCGAGGATCGACCCGATCCCCCT-TACGTGCTACCGATC
15335895 CTGCAGCCATAACCCTCGGTCCGACTGGGG
129 CTGCAGCCATAACCCTCGGTCCGACTGGGG
* * * * *
15335925 CTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAA
1 CTTAGAC-TGAGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTAAA
* * * * * * *
15335989 CCAACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACTCGGTCCCCCTTGCGTGCTATCGATCC
65 CCAACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTTACGTGCTACCGATCC
* *
15336054 TGCTGCCGTAACCCTCGGTCCG
130 TGCAGCCATAACCCTCGGTCCG
15336076 GTCCAATCTT
Statistics
Matches: 124, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 31 0.25
159 90 0.73
160 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCGCTAAAC
CAACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTTACGTGCTACCGATCCT
GCAGCCATAACCCTCGGTCCGACTGGGG
Found at i:15336414 original size:355 final size:341
Alignment explanation
Indices: 15335766--15336903 Score: 1026
Period size: 355 Copynumber: 3.2 Consensus size: 341
15335756 CCGATCTGAT
* * * * * * * * * * * **
15335766 CTTAGACTGAGAATGAGCTCCATATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTAAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCAGGCGCTCAGT
* * * * * * * *
15335831 CGGCCAGAGAGG-GGTAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACT-TGCTGCCGGT
66 CGACCGGAGAGGCAG-AATGCGCAAGCCGGGGATCAGCCAGATCCCCCTCT-GTGTGCTGCCGGT
* * *
15335894 CCTGCAGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* *
15335959 AACCCACGAAACAAGCGTGCGGG-TGCTCAACCAACCGGAGAGGCAGAATGCGCAAGTTGGGGAT
194 AACCCACGAAACGAGCGTGCGGGCT-CTCAACCAACCGGAGAGGCAGAATGCGCAAGTCGGGGAT
* * * * * * *
15336023 CGACTCGGTCCCCCTTGCGTGCTATCGATCCTGCTGCCGTAACCCTCGGTCCGGTCCAATCTTTG
258 CG-CCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGGTCCGATTCGATCTTAG
*
15336088 ACTGGGAAAGAACTCCGTATG
322 ACT-GGAAAGAACTCTGTATG
*
15336109 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCAGGCGCTCAGT
* * *
15336174 CGGCCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCAGATCCCCTTCTGCATGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCAGAT-CCC--C--C-T-CTGT-G-T--
* * * * *
15336239 CGCTGCCGGTCCTGCTGCCACAACCCTCGATCCAATTAGGGCTTAGACATGGAATGAACTTCGTA
120 -GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTA
* * ** ** *
15336304 TGCCTAAACCAACCCATGAAACGAGCGTGCGGGCTCTCAACCGGCCAAAGAGGCAGAATGCACAA
184 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAACCAACCGGAGAGGCAGAATGCGCAA
* * ** ** *
15336369 GTCGAGGATCAGCCCAGTCCCCCCCTATATGCTGCCAATCTGCTGCTGGTCCTGTTGTCGGAACC
249 GTCGGGGATC-GCCCGGT-CCCCCCTACGTGCTATCGATC--CTGCT-G-CC----GT---AACC
* * *
15336434 CTCTGTCTGATTCGATCTTAGACTAGGAATGAACTCTGTATG
301 CTCGGTCCGATTCGATCTTAGACT-GGAAAGAACTCTGTATG
* * * * * * **
15336476 CTTATACAT-GGAATGAACTCCATATGCCAAAGCCAACCCACGAAAC-AAGCATGCGGGTACTCA
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-CATGCAGGCGCTCA
* * ** * * *
15336539 GCCGACCGGAGGGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGTGTGCTGCCGAT
64 GTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCAGATCCCCCTCTGTGTGCTGCCGGT
* * * **
15336604 CTTGCTACAACAACCCTCGGTCCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * *
15336669 AACCCACGAAATGGGCGCGCGGGCACTCAGCCTACCGGAGAGGCAGAATGCGTAAGCCGGGGATC
194 AACCCACGAAACGAGCGTGCGGGCTCTCAACCAACCGGAGAGGCAGAATGCGCAAGTCGGGGATC
* * * * * *
15336734 GGTCCGGTCCCCCCTACGTGCTTTCGATCCTGCTACCGCAACCCTCGATCCGATTCGATATTAGA
259 -GCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGGTCCGATTCGATCTTAGA
* *
15336799 CTAGAAATCAACTCTGTATG
323 CTGGAAA-GAACTCTGTATG
* * *
15336819 CTTAGACTGGGGATGAATTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCAGGCGCTCAGT
*
15336884 CGACCAGAGAGGCAGAATGC
66 CGACCGGAGAGGCAGAATGC
15336904 ACAAATCAGG
Statistics
Matches: 630, Mismatches: 132, Indels: 66
0.76 0.16 0.08
Matches are distributed among these distances:
342 4 0.01
343 188 0.30
344 4 0.01
346 2 0.00
348 1 0.00
349 2 0.00
350 4 0.01
352 6 0.01
354 16 0.03
355 241 0.38
356 16 0.03
358 6 0.01
359 2 0.00
360 6 0.01
361 1 0.00
362 1 0.00
364 3 0.00
366 5 0.01
367 121 0.19
368 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (341 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATGCAGGCGCTCAGT
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCAGATCCCCCTCTGTGTGCTGCCGGTCC
TGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCTCTCAACCAACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGC
CCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGGTCCGATTCGATCTTAGACTG
GAAAGAACTCTGTATG
Found at i:15337637 original size:26 final size:26
Alignment explanation
Indices: 15337608--15337659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15337598 CGGTTTGATA
15337608 TTAGAC-TAGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
15337634 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
15337660 CTAAGCCGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:15338982 original size:26 final size:26
Alignment explanation
Indices: 15338944--15338996 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15338934 GGCTCAAAAT
15338944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15338970 CTTAGACAT-GGAATGGACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15338996 C
1 C
15338997 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15339522 original size:158 final size:157
Alignment explanation
Indices: 15338970--15339630 Score: 619
Period size: 159 Copynumber: 4.2 Consensus size: 157
15338960 ACTCCGTATG
* * * * * * *
15338970 CTTAGACAT-GGAATGGACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAG
* * * * **
15339034 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTTGTGTGCTGTCGATC
65 CGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCC-TACGTGCTGTCGATC
* * ** * * * *
15339099 CTACTACCTTAACCCTTGGTCCGGTCCAAT
128 CCACTGCCGCAACCCTCGGTCTGATCCGAT
*
15339129 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAGC
* * * * * * * ** *
15339194 CAGCCGAAAAGGCATAATGCACAAGCTGAGGATCGGCCC-GATCCCCCTCTATGTGCTACCGGTC
66 GA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAG-TCCCCC-CTACGTGCTGTCGATC
* * * * * *
15339258 TCACTGCCACAATCCTCAGTCTGA-CTGGGT
128 CCACTGCCGCAACCCTCGGTCTGATC-CGAT
* ** * * *
15339288 CTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCATGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCT-GA
* * * * *
15339352 CCGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCAGTCCCCCCTACGTGCTGTCGATCC
64 GCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCC
*
15339417 CACTGTCGCAACCCTCGGTCTGATCCGAT
129 CACTGCCGCAACCCTCGGTCTGATCCGAT
* * * * ** * *
15339446 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCGATAAAATGAGTGTGCGAGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAGC
* * * *
15339511 TGACCGTAGAGGCACAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
66 -GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCCC
* *
15339576 ACAGCCGTAACCCTCGGTCTGATCCGAT
130 ACTGCCGCAACCCTCGGTCTGATCCGAT
*
15339604 CATAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15339631 TTAGACTGGA
Statistics
Matches: 404, Mismatches: 88, Indels: 21
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 189 0.47
159 206 0.51
160 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAGC
GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCCCA
CTGCCGCAACCCTCGGTCTGATCCGAT
Found at i:15339546 original size:317 final size:318
Alignment explanation
Indices: 15338970--15339557 Score: 752
Period size: 317 Copynumber: 1.9 Consensus size: 318
15338960 ACTCCGTATG
* * * * * *
15338970 CTTAGACATGGAATGGACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCAACGAAACGAGCATACGGGCGCTCAAC
* **
15339035 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTTGTGTGCTGTCGATCC
66 CACTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTTACGTGCTGTCGATCC
* ** * * *
15339100 TACTACCTTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
131 CACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCACAAGTCAA
* * * * *
15339165 CCCATGAAACGAGCATGCGGGTGCTGAGCCAGCCGAAAAGGCATAATGCACAAGCTGAGGATCGG
196 CCCATAAAACGAGCATGCGAGCGCTGAGCCAGCCGAAAAGGCACAATGCACAAGCCGAGGATCGG
15339230 CCC-GATCCCCCTCTATGTGCTACCGGTCTCACTGCCACAATCCTCAGTCTGACTGGGT
261 CCCAG-TCCCCCTCTATGTGCTACCGGTCTCACTGCCACAATCCTCAGTCTGACTGGGT
* * * *
15339288 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCATGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCAACGAAACGAGCATACGGGCGCTCAAC
* * *
15339353 CGACT-GGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCAGTCCCCCC-TACGTGCTGTCGATC
66 C-ACTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTTACGTGCTGTCGATC
** * * *
15339416 CCACTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCA
130 CCACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCACAAGTCA
* * ** * * * * *
15339481 ACCGATAAAATGAGTGTGCGAGCGCTGAG-CTGACCGTAGAGGCACAATGCGCAAGCCGGGGATC
195 ACCCATAAAACGAGCATGCGAGCGCTGAGCCAG-CCGAAAAGGCACAATGCACAAGCCGAGGATC
15339545 GGCCCAGTCCCCC
259 GGCCCAGTCCCCC
15339558 CTGCGTGCTG
Statistics
Matches: 226, Mismatches: 41, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
316 2 0.01
317 125 0.55
318 97 0.43
319 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (318 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCAACGAAACGAGCATACGGGCGCTCAAC
CACTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTTACGTGCTGTCGATCC
CACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCACAAGTCAA
CCCATAAAACGAGCATGCGAGCGCTGAGCCAGCCGAAAAGGCACAATGCACAAGCCGAGGATCGG
CCCAGTCCCCCTCTATGTGCTACCGGTCTCACTGCCACAATCCTCAGTCTGACTGGGT
Found at i:15339635 original size:26 final size:26
Alignment explanation
Indices: 15339606--15339656 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15339596 GATCCGATCA
15339606 TAGACTGG-GAATGAACTCCGTATGCT
1 TAGACTGGAG-ATGAACTCCGTATGCT
*
15339632 TAGACTGGAGATGAACTCTGTATGC
1 TAGACTGGAGATGAACTCCGTATGC
15339657 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGAGATGAACTCCGTATGCT
Found at i:15344310 original size:159 final size:158
Alignment explanation
Indices: 15343932--15344503 Score: 493
Period size: 159 Copynumber: 3.6 Consensus size: 158
15343922 CACCCGTTCG
* * * * * * * * * * *
15343932 ATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCG-GTGAGCGTCCGCACGCTCATTTCGTGGGTTA
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCATGCTCGTTTCATGGGTTG
* * ***** * * * *
15343996 ACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATTGGACCAGACCGAGGGTTGCGGTAACAGG
66 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGTAGCAGG
* * * * * *
15344060 ATCGATAGTACACAAGGGGGACCGGGTCA
130 ACCGACAGCACACAGGGGGGACCGAGCCA
* * * * * * *
15344089 ATCCCTGACTGGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCATGCCCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCATGCTCGTTTCATGGGTTG
* ** * *
15344154 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGTAGCAGGA
** ** * **
15344219 CCGGTAGCATGCAGAGGTGGACCGAGCTG
131 CCGACAGCACACAG-GGGGGACCGAGCCA
* * * * *
15344248 ATCCCCGGCTTGCGCATTATGCCTCTCTGATTGACTCAGCGCCTGCATGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCATGCTCGTTTCATGGGTTG
* * * * ** *
15344313 ACTTAGGCATACGGAGTCCATTCCAAGTCTATGATCGAACCGGACCAAGGGTTGTGGTAGCAGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGTAGCAGGA
*
15344378 TCGACAGCACACAGGGGGGACCGAGCCA
131 CCGACAGCACACAGGGGGGACCGAGCCA
* * ** * * *
15344406 ATCCCTGGCTTGCACATTCTGCCTCTCCGGCAG-CTGAGCACCCGCACGCTTGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCATGCTCGTTTCATGGGTTG
*
15344470 GCTTAGGCATACGGAGTTCATTCCTTGTCTAAGC
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15344504 ATACGGAGTT
Statistics
Matches: 326, Mismatches: 86, Indels: 6
0.78 0.21 0.01
Matches are distributed among these distances:
157 83 0.25
158 118 0.36
159 125 0.38
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGATAGACTGAGCGCCCGCATGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGTAGCAGGA
CCGACAGCACACAGGGGGGACCGAGCCA
Found at i:15344528 original size:26 final size:26
Alignment explanation
Indices: 15344476--15344528 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15344466 GTTGGCTTAG
* *
15344476 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCATGGTCTAA
15344502 GCATACGGAGTTCATTCATAGGT-TAA
1 GCATACGGAGTTCATTCAT-GGTCTAA
15344528 G
1 G
15344529 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCATGGTCTAA
Found at i:15344893 original size:26 final size:26
Alignment explanation
Indices: 15344856--15344908 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15344846 GTTGATGTAG
15344856 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
15344882 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15344908 G
1 G
15344909 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15345291 original size:160 final size:158
Alignment explanation
Indices: 15345029--15345392 Score: 374
Period size: 160 Copynumber: 2.3 Consensus size: 158
15345019 GGATCGGCAG
* * * * *
15345029 CACAGGGGGGACAGGGCCGATCCCTGGCTTACGCATTCTACCTC-TCCGACCGGATGAGCGCCCG
1 CACAGGGGGGAC-GGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCAGACCGGATCAGCGCCCG
* * * *
15345093 TACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCAG-CCGG
65 TACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGGTCTAAG--ACCAGACCGG
** *
15345157 ACCGAGGGTTGTGGTAGCGGGACCGACAGCA
128 ACCGAGGGTTGTGACAGCAGGACCGACAGCA
* *
15345188 CACAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCAG-CCGGCTCAGCGCCC
1 CACAG-GGGGGA-CGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCAGACCGGATCAGCGCCC
* * * ** * * *
15345252 GTATGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCGGTCTAAGATCAGACCGGA
64 GTACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGGTCTAAGACCAGACCGGA
* * *
15345317 TCGAGGGTTGTGACAGTAGGATCGACAGCA
129 CCGAGGGTTGTGACAGCAGGACCGACAGCA
** * * *
15345347 CGTAGTTGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCT
1 CACAG-GGGGGA-CGGGTCGATCCCTGGCTTGCGCATTCTGCCTCT
15345393 CCGACCGAGT
Statistics
Matches: 168, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
158 3 0.02
159 72 0.43
160 89 0.53
161 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CACAGGGGGGACGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCAGACCGGATCAGCGCCCGT
ACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGGTCTAAGACCAGACCGGACC
GAGGGTTGTGACAGCAGGACCGACAGCA
Found at i:15346216 original size:26 final size:26
Alignment explanation
Indices: 15346164--15346216 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15346154 GTTGAGTTAG
* * *
15346164 GCATACGGTGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15346190 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15346216 G
1 G
15346217 ATCACATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15346698 original size:26 final size:26
Alignment explanation
Indices: 15346648--15346700 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15346638 GTTAGCTTAG
* *
15346648 GCATACGGATTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15346674 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15346700 G
1 G
15346701 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15347717 original size:301 final size:302
Alignment explanation
Indices: 15347175--15347773 Score: 769
Period size: 301 Copynumber: 2.0 Consensus size: 302
15347165 GTGCCTGCAC
*
15347175 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
*** * * *
15347240 GGGTTATGGCAGCGGGACCGACAGCAGGTAGAGTGGGATCAGGCTGATCCTCGGCTTAAGCATTA
66 GGGTTATGGCAGCGGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCTCGGCTTAAGCATTA
* **
15347305 TGCCTCTCTGGCAGGCTCAATGCCAGCACACTCGTTTCATGCGTTGACTTAGGCATACGGAGTTC
131 TGCCTCTCTGGCAGGCTCAACGCCAGCACACTCGTTTCATGCGTTGACTTACACATACGGAGTTC
* * ** * * *
15347370 ATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC-AGGGGG
196 ATTCCCAGTCTAAGAACAGACCAGACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAAGGGGG
* * * * * *
15347434 GATCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGAT
261 GACCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGAT
* * * *
15347476 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCGA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* ** *
15347541 GGGTTATGGTAGCGGGACCGACAGCACACAGAGGGGGACC-GAGCCGAT-CTCTGGCTTGCGTAT
66 GGGTTATGGCAGCGGGACCGACAGCACACAGAGGGGGACCAG-GCCGATCCTC-GGCTTAAGCAT
* * * ** *
15347604 TATGCCT-TTTCGGTCA-GCTCAGCGCTCAG-ACGCTCGTTTTGTGGGTTGACTTACACATACGG
129 TATGCCTCTCT-GG-CAGGCTCAACGC-CAGCACACTCGTTTCATGCGTTGACTTACACATACGG
15347666 AGTTCATTCCCAGTCTAAGAACAGACCAGACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAA
191 AGTTCATTCCCAGTCTAAGAACAGACCAGACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAA
*
15347731 GGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCC
256 GGGGGGACCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCC
15347774 AGCCGACTGA
Statistics
Matches: 254, Mismatches: 38, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
300 6 0.02
301 206 0.81
302 42 0.17
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (302 bp):
GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
GGGTTATGGCAGCGGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCTCGGCTTAAGCATTA
TGCCTCTCTGGCAGGCTCAACGCCAGCACACTCGTTTCATGCGTTGACTTACACATACGGAGTTC
ATTCCCAGTCTAAGAACAGACCAGACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAAGGGGG
GACCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGAT
Found at i:15347856 original size:26 final size:26
Alignment explanation
Indices: 15347817--15347869 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15347807 GTTGGCTTAG
* *
15347817 GCATACGAAGTTCAAT-CCATGTCTAA
1 GCATACAAAATTCAATCCCA-GTCTAA
*
15347843 GCATACAAAATTCATTCCCAGTCTAA
1 GCATACAAAATTCAATCCCAGTCTAA
15347869 G
1 G
15347870 ATCGGTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAATTCAATCCCAGTCTAA
Found at i:15348203 original size:26 final size:26
Alignment explanation
Indices: 15348167--15348217 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15348157 GTTGACCTAG
15348167 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15348193 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAATCTA
15348218 GGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15348484 original size:159 final size:158
Alignment explanation
Indices: 15348193--15348853 Score: 629
Period size: 159 Copynumber: 4.2 Consensus size: 158
15348183 CCCAATCTAA
*** * *
15348193 GCATACGGAGTTCATTCCCAGTCT-AGGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * *
15348257 AGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGC
* * * *
15348322 CCGCTCGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *** *
15348351 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGTGTTGTGGCAATGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * *
15348415 AGCCCGCAAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGACTCAACA
65 AGCACGC-AAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACG
* *
15348480 CCCGCACGCTCGTTTCTTGGGTTGACTTAT
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * *
15348510 GCATACGAAGTTTATTCCCAGTCTAAG-ATCAGATC-GAACGAGGGTTGCT-GCAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-TCGGACCGAGGGTTG-TGGCAGCAGGACCGA
* * * * * ** * *
15348572 CACCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGTTCGGCTGAGCG
64 CAGCACGCAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACG
* * *
15348637 CCCGCAAGCTCATTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15348667 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC-GAGACC-A
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAG-GACCGA
* * * * * ***
15348729 CCCGCAGGTAGAGGGGGATCGGGCCCATCCTTGGCTTGCGCATTATGCCTC-TCTGGCCGGCTCA
64 -CAGCACGCA-AGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTC-GGCCGGCTCA
* *
15348793 ACGCCCGCACACTTGTTTCGTGGGTTGACTTAG
126 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15348826 GCATACGGAGTACATTCCCAGTCTAAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGC
15348854 ATACGGAGTG
Statistics
Matches: 401, Mismatches: 87, Indels: 29
0.78 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 98 0.24
158 106 0.26
159 188 0.47
160 6 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15348660 original size:316 final size:317
Alignment explanation
Indices: 15348193--15349353 Score: 1083
Period size: 316 Copynumber: 3.6 Consensus size: 317
15348183 CCCAATCTAA
* * *
15348193 GCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACA
* * *
15348258 GCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 CCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
** * * *
15348323 CGCTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * ** * *
15348388 ACCGAGTGTTGTGGCAATGGGACCGGCAGCCCGCAAAGGGGGACCGAGCCGATCCCCAGCTTGCG
196 ACCGAGGGTTGTGGCAACGAGACCACCAGCACGCAAAGGGGGACCGAGCCCATCCCCAGCTTGCG
* * *
15348453 CATTATGCCTCT-TCGGCCGACTCAACACCCGCACGCTCGTTTCTTGGGTTGACTTAT
261 CATTATGCCTCTCT-GGCCGACTCAACACCCGCACACTCGTTTCGTGGGTTGACTTAG
* *
15348510 GCATACGAAGTTTATTCCCAGTCTAAGATCAGATC-GAACGAGGGTTGCT-GCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTG-TGGCAGCAGGATCGAC
* * *
15348573 ACCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGTTCGGCTGAGCGC
65 ACCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
15348638 CCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
130 CCGCAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * * * ***
15348703 GACCGAGGGTTGTGGCAGCGAGACCACCCGCAGGTAGAGGGGGATCGGGCCCATCCTTGGCTTGC
195 GACCGAGGGTTGTGGCAACGAGACCACCAGCACGCAAAGGGGGACCGAGCCCATCCCCAGCTTGC
* * *
15348768 GCATTATGCCTCTCTGGCCGGCTCAACGCCCGCACACTTGTTTCGTGGGTTGACTTAG
260 GCATTATGCCTCTCTGGCCGACTCAACACCCGCACACTCGTTTCGTGGGTTGACTTAG
* ** * * * * * *
15348826 GCATACGGAGTACATTCCCAGTCTAAGCATACGGAGTGCATTCCCAATCTAAGATCCGATCG-AC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--A--G-A-TCGGAA-CGAGGGT-TG-TGGCAG
* * * *
15348890 CGAGGGTTACGACAGCAGGATCGACAATGCACAGGGGGGACTGGGCTGATCCCCGGCTT-ACGCA
55 C-A-GGAT-CGACA-C-----C-AC---G--CAGGGGGGACCGGGCCGATCCCCAGCTTGA-GCA
* * * * *
15348954 TTCTGCCTCCCCGATCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
104 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAG
* * * * * **** * * *
15349019 TTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGTAGCGGGACTGGTAGCAGGTAGAG
169 TTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACGAGACCACCAGCACGCAAAG
* * * * * ** *
15349084 GGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCTGGCAGGCTCAATGCCCGTACACTC
234 GGGGACCGAGCCCATCCCCAGCTTGCGCATTATGCCTCTCTGGCCGACTCAACACCCGCACACTC
**
15349149 GTTTTATGGGTTGACTTAG
299 GTTTCGTGGGTTGACTTAG
* * * * * * *
15349168 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCATGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * *
15349233 ACATGCAGGGGTGATCGGGTCGATCCCCGGCTT-ACGCATTCTGCCTATCCGGCCGGCTGAGTGC
66 CCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGA-GCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * * **
15349297 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
130 CCGCAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15349354 ATACGGAGTT
Statistics
Matches: 701, Mismatches: 112, Indels: 62
0.80 0.13 0.07
Matches are distributed among these distances:
316 264 0.38
317 136 0.19
318 1 0.00
319 1 0.00
320 1 0.00
322 2 0.00
323 2 0.00
324 2 0.00
325 2 0.00
326 4 0.01
327 4 0.01
328 2 0.00
329 8 0.01
330 7 0.01
331 3 0.00
332 3 0.00
333 4 0.01
334 2 0.00
335 1 0.00
336 2 0.00
337 2 0.00
338 1 0.00
340 2 0.00
341 3 0.00
342 242 0.35
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAACGAGGGTTGTGGCAGCAGGATCGACA
CCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGCAACGAGACCACCAGCACGCAAAGGGGGACCGAGCCCATCCCCAGCTTGCG
CATTATGCCTCTCTGGCCGACTCAACACCCGCACACTCGTTTCGTGGGTTGACTTAG
Found at i:15348862 original size:26 final size:26
Alignment explanation
Indices: 15348826--15348878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15348816 GTTGACTTAG
*
15348826 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAATCTAA
*
15348852 GCATACGGAGTGCATTCCCAATCTAA
1 GCATACGGAGTACATTCCCAATCTAA
15348878 G
1 G
15348879 ATCCGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAATCTAA
Found at i:15349135 original size:342 final size:342
Alignment explanation
Indices: 15348523--15349194 Score: 972
Period size: 342 Copynumber: 2.0 Consensus size: 342
15348513 TACGAAGTTT
* * * *
15348523 ATTCCCAGTCTAAGATCAGATCGAACGAGGGTTGCTGCAGCAGGATCGACACCACGCAGGGGGGA
1 ATTCCCAATCTAAGATCAGATCGAACGAGGGTTACTGCAGCAGGATCGACAACACACAGGGGGGA
** * * *
15348588 TCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCTTCGTTCGGCTGAGCGCCCGCAAGCTCATTTC
66 TCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCCCCGATCAGCTGAGCGCCCGCAAGCCCATTTC
*
15348653 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG
131 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTGTGG
* * **
15348718 CAGCGAGACCACCCGCAGGTAGAGGGGGATCGGGCCCATCCTTGGCTTGCGCATTATGCCTCTCT
196 CAGCGAGACCACCAGCAGGTAGAGGGGGACCGGGCCCATCCTCAGCTTGCGCATTATGCCTCTCT
* * *
15348783 GGCCGGCTCAACGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAGT
261 GGCAGGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCCAGT
15348848 CTAAGCATACGGAGTGC
326 CTAAGCATACGGAGTGC
* * **
15348865 ATTCCCAATCTAAGATCCGATCGACCGAGGGTTAC-GACAGCAGGATCGACAATGCACAGGGGGG
1 ATTCCCAATCTAAGATCAGATCGAACGAGGGTTACTG-CAGCAGGATCGACAACACACAGGGGGG
* * *
15348929 A-CTGGGCTGATCCCCGGCTT-ACGCATTCTGCCTCCCCGATCAGCTGAGCGCCCGCACGCCCAT
65 ATC-GGGCCGATCCCCAGCTTGA-GCATTCTGCCTCCCCGATCAGCTGAGCGCCCGCAAGCCCAT
*
15348992 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTG
128 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTG
* * **** *
15349057 TGGTAGCGGGACTGGTAGCAGGTAGAGGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCTC
193 TGGCAGCGAGACCACCAGCAGGTAGAGGGGGACCGGGCCCATCCTCAGCTTGCGCATTATGCCTC
* * * *
15349122 TCTGGCAGGCTCAATGCCCGTACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCC
258 TCTGGCAGGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCC
15349187 AGTCTAAG
323 AGTCTAAG
15349195 ATCAGACCAG
Statistics
Matches: 291, Mismatches: 36, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
341 3 0.01
342 288 0.99
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (342 bp):
ATTCCCAATCTAAGATCAGATCGAACGAGGGTTACTGCAGCAGGATCGACAACACACAGGGGGGA
TCGGGCCGATCCCCAGCTTGAGCATTCTGCCTCCCCGATCAGCTGAGCGCCCGCAAGCCCATTTC
GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTGTGG
CAGCGAGACCACCAGCAGGTAGAGGGGGACCGGGCCCATCCTCAGCTTGCGCATTATGCCTCTCT
GGCAGGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCCAGT
CTAAGCATACGGAGTGC
Found at i:15349161 original size:159 final size:159
Alignment explanation
Indices: 15348903--15349354 Score: 396
Period size: 159 Copynumber: 2.8 Consensus size: 159
15348893 GGGTTACGAC
* * * * **
15348903 AGCAGGATCGACAATGCA--CAGGGGGGACTGGGCTGATCCCCGGCTTACGCATTCTGCCTCCCC
1 AGCAGGATCGACAA--CAGGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTATCC
* * ** * * * * *
15348966 GATCA-GCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 G-GCAGGCTCAATGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * *
15349030 TCTAAGCCCCAGA-CGGACCGAGGGTTGTGGT
128 TCTAAGCACCAGACCAGACCAAGGGTTGCGGT
* ** * * * * * *
15349061 AGCGGGA-CTGGTAGCAGGTAGAGGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCT
1 AGCAGGATC-GACAACAGGCAG-GGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTATCC
* * *
15349125 GGCAGGCTCAATGCCCGTACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-G
64 GGCAGGCTCAATGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
*
15349189 TCTAAG-ATCAGACCAGACCAAGGGTTGCGGT
128 TCTAAGCACCAGACCAGACCAAGGGTTGCGGT
* * * * * * *
15349220 AGCATGATCGACAACATGCAGGGGTGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTATCCGG
1 AGCAGGATCGACAACAGGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTATCCGG
* * * * * *
15349285 CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
66 CAGGCTCAATGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
15349350 AAGCA
131 AAGCA
15349355 TACGGAGTTC
Statistics
Matches: 229, Mismatches: 55, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 4 0.02
158 106 0.46
159 113 0.49
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
AGCAGGATCGACAACAGGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTATCCGG
CAGGCTCAATGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACCAGACCAGACCAAGGGTTGCGGT
Found at i:15349325 original size:158 final size:154
Alignment explanation
Indices: 15348852--15349352 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 154
15348842 CCCAGTCTAA
* * * * **
15348852 GCATACGGAGTGCATTCCCA-ATCTAAGATCCGATCGACCGAGGGTTACGACAGCAGGATCGAC-
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGACCGAGGGTTGCGGTAGCAGGATCGACA
* ** * *
15348915 A-ATGCACAGGGGGGACTGGGCTGATCCCCGGCTTACGCATTCTGCCTCCCCGATCAGCTGAGCG
64 ACATG--CAGGGGGGAC-GGGC-GATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGTG
* *
15348979 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
125 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * **
15349009 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGTAGCGGGA-CTGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGAC-GACCGAGGGTTGCGGTAGCAGGATC-GAC
* * * * * * * * * * *
15349073 AGCAGGTAGAGGGGGACCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCTGGCAGGCTCAATG
63 AACATGCAG-GGGGGA-CGGG-CGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGTG
* * ** *
15349138 CCCGTACACTCGTTTTATGGGTTGACTTAG
125 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
15349168 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCATGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-C-GACCGAGGGTTGCGGTAGCAGGATCGAC
* *
15349232 AACATGCAGGGGTGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTATCCGGCCGGCTGAGTGC
63 AACATGCAGGGGGGA-CGGG-CGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGTGC
15349297 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15349326 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15349353 CATACGGAGT
Statistics
Matches: 264, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 25 0.09
158 118 0.45
159 110 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGACCGAGGGTTGCGGTAGCAGGATCGACAAC
ATGCAGGGGGGACGGGCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15349376 original size:26 final size:26
Alignment explanation
Indices: 15349326--15349378 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15349316 GTTGGCTTAG
*
15349326 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
15349352 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15349378 G
1 G
15349379 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15349726 original size:26 final size:26
Alignment explanation
Indices: 15349697--15349746 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15349687 AACGTAGGCA
*
15349697 TACGGAGTTTA-TCCCTAGTCTAAGCC
1 TACGGAGTTCATTCCC-AGTCTAAGCC
15349723 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15349747 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:15350358 original size:26 final size:26
Alignment explanation
Indices: 15350328--15350380 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15350318 GTAGACTTAG
*
15350328 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
* *
15350354 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
15350380 G
1 G
15350381 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:15351856 original size:159 final size:159
Alignment explanation
Indices: 15351621--15352050 Score: 456
Period size: 159 Copynumber: 2.7 Consensus size: 159
15351611 CAGCATGCAT
* * * * *
15351621 GGGGGACTGGGTCGATCCCTGGCTTACGCATTTTGCCTCTCCTACCAGCTGAGCGCCCGCATGCC
1 GGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCATGCT
* * *
15351686 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CCGAACCGAG
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA--CCAGACCGAACCAAG
* *** *
15351749 GGTTGTGACAGTGGGA-CTAACAGCACG-TAG
129 GGTTGAGACAGCAAGATC-AACAGCACGCAAG
* * * * *
15351779 AGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGTTCAGCGCCCGGATGC
1 -GGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCATGC
* * * * * * *
15351844 TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTAAGATCAGATCGGACCAAG
65 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGAACCAAG
* * *
15351908 GGTTGAGGCAGCAAGATCGACAGCATGCAAG
129 GGTTGAGACAGCAAGATCAACAGCACGCAAG
* * * * * * *
15351939 GGGGGTCCAGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCT
1 GGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCATGCT
*
15352004 CATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAG
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15352051 CATACGGAGT
Statistics
Matches: 220, Mismatches: 45, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
158 6 0.03
159 207 0.94
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCATGCT
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCGAACCAAGGG
TTGAGACAGCAAGATCAACAGCACGCAAG
Found at i:15352073 original size:26 final size:26
Alignment explanation
Indices: 15352024--15352076 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15352014 GTTGGCTTAG
* *
15352024 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
15352050 GCATACGGAGTTCAGTCCCA-GTCTAA
1 GCATACGGAGTTCA-TCCCATGTCTAA
15352076 G
1 G
15352077 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:15352258 original size:26 final size:26
Alignment explanation
Indices: 15352219--15352274 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
15352209 TGGGTTGACT
15352219 TAAGCATACAGAGTCCATCCCCAGTC
1 TAAGCATACAGAGTCCATCCCCAGTC
** * *
15352245 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTCCATCCCCAGTC
15352271 TAAG
1 TAAG
15352275 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTCCATCCCCAGTC
Found at i:15353006 original size:26 final size:26
Alignment explanation
Indices: 15352969--15353021 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15352959 GTTAGCTTAG
*
15352969 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15352995 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15353021 G
1 G
15353022 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15353738 original size:25 final size:25
Alignment explanation
Indices: 15353692--15353739 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
15353682 GTTGACTTAG
* *
15353692 GCATACGGAGTTCATCTTCAGTCAA
1 GCATACAGAGTTCATCTCCAGTCAA
15353717 GCATACAGAGTTCAT-TCCCAGTC
1 GCATACAGAGTTCATCT-CCAGTC
15353740 TAGGATCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCTCCAGTCAA
Found at i:15354886 original size:159 final size:159
Alignment explanation
Indices: 15354714--15355397 Score: 558
Period size: 159 Copynumber: 4.3 Consensus size: 159
15354704 TCCGCACGTC
* * *
15354714 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAG-CCGGACCAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTC-AGACCAGACCAAGG
** * *
15354778 GTTGTGGCAGC-GAGACTGGCAGCACGCAGAAGGGGACCGGGCTGATCCTCGGCTTGCGCATTAT
65 GTTGCAGCAGCAG-GATTGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTAT
* * *
15354842 GCCTCTTCTATCGGCTCAGCACCCGCACGCT
129 ACCTCTTCGATCGGCTCAGCACCCGCATGCT
* * * ** *
15354873 CATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAATATCAGACCGGACCAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCTCAGACCAGACCAAGG
* * * * ** * * * * * *
15354937 GTTGCAGTAGCAGGATTGACAGCATGCTGGGGGGGATCGTGCCGATCCCCGGCTTACGTATTCTA
65 GTTGCAGCAGCAGGATTGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTATA
* * * * * *
15355002 CCTCTCCG-GCTAGTTGAGCACCCGCATGCC
130 CCTCTTCGATC-GGCTCAGCACCCGCATGCT
* * * * * * *
15355032 CGTTTCATGGATTGGCTTAGGCATAGGGCA-TTGATTCCATGTCTAAGCCCCAG-CCAGTCCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAG-CTCAGACCAGACCAAG
* * ** * *
15355095 GGTTG-TGCCAGCAAGATTGGCAGCACGTTGAAGGGGACCGAGCTGATCCCCGACTTGCGCATTA
64 GGTTGCAG-CAGCAGGATTGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTA
* * ** *
15355159 TGCCTCTTCGGTCGGCTCAGTGCCCGCAGGCT
128 TACCTCTTCGATCGGCTCAGCACCCGCATGCT
* * * * * * * * *
15355191 CGTTTTGTGGGTTGACTTATGCGTACAGAGTTCATTCC-TAGTCTAAGATCAGACCAAATCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCTCAGACCAGACCAAGG
* * * * * ** * *
15355255 GTTGCAGTAGCAGGA-TGGACAACACGTAGAGGGGGACCCGATTGATCCCCGGCTTGCACATTCT
65 GTTGCAGCAGCAGGATTGG-CAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTAT
* *
15355319 ACCTCTCCGATCGGCTAAGCACCCGCATGCT
129 ACCTCTTCGATCGGCTCAGCACCCGCATGCT
* *
15355350 CGTTTCGTGGGTTGGGTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15355398 ATACGGAGTT
Statistics
Matches: 400, Mismatches: 110, Indels: 30
0.74 0.20 0.06
Matches are distributed among these distances:
158 13 0.03
159 378 0.94
160 9 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCAGACCAGACCAAGGG
TTGCAGCAGCAGGATTGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCGCATTATAC
CTCTTCGATCGGCTCAGCACCCGCATGCT
Found at i:15355304 original size:318 final size:317
Alignment explanation
Indices: 15354713--15355397 Score: 865
Period size: 318 Copynumber: 2.2 Consensus size: 317
15354703 GTCCGCACGT
* * *
15354713 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAGCCGGACCAAGG
1 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
* * * * *
15354778 GTTGTGGCAGCGAGACTGGCAGCACGCAGAAGGGGACCGGGCTGATCCTCGGCTTGCGCATTATG
66 GTTGTGCCAGCAAGACTGGCAGCACGCAGAAGGGGACCGAGCTGATCCCCGACTTGCGCATTATG
* *
15354843 CCTCTTCTATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCAT
131 CCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCAT
* ** * * * *
15354908 TCCTAGTCTAATATCAGACCGGACCAAGGGTTGCAGTAGCAGGATTGACAGCATGCTGGGGGGGA
196 TCCTAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAGGATGGACAACACGCTGAGGGGGA
* ** * * *
15354973 TCGTGCCGATCCCCGGCTTACGTATTCTACCTCTCCG-GCTAGTTGAGCACCCGCATGC
261 CCGT-CCGATCCCCGGCTTACACATTCTACCTCTCCGATC-AGCTAAGCACCCGCATGC
* * * *
15355031 CCGTTTCATGGATTGGCTTAGGCATAGGGCA-TTGATTCCATGTCTAAGCCCCAGCCAGTCCGAG
1 CCGTTTCATGGGTTGGCTTAGGCATAGGG-AGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAG
* **
15355095 GGTTGTGCCAGCAAGATTGGCAGCACGTTGAAGGGGACCGAGCTGATCCCCGACTTGCGCATTAT
65 GGTTGTGCCAGCAAGACTGGCAGCACGCAGAAGGGGACCGAGCTGATCCCCGACTTGCGCATTAT
* ** * * * *
15355160 GCCTCTTCGGTCGGCTCAGTGCCCGCAGGCTCGTTTTGTGGGTTGACTTATGCGTACAGAGTTCA
130 GCCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCA
* *
15355225 TTCCTAGTCTAAGATCAGACCAAATCGAGGGTTGCAGTAGCAGGATGGACAACACG-TAGAGGGG
195 TTCCTAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAGGATGGACAACACGCT-GAGGGG
* * *
15355289 GACCCGAT-TGATCCCCGGCTTGCACATTCTACCTCTCCGATCGGCTAAGCACCCGCATGC
259 GA-CCG-TCCGATCCCCGGCTTACACATTCTACCTCTCCGATCAGCTAAGCACCCGCATGC
* * * **
15355349 TCGTTTCGTGGGTTGGGTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15355398 ATACGGAGTT
Statistics
Matches: 312, Mismatches: 49, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
317 2 0.01
318 305 0.98
319 4 0.01
320 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (317 bp):
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
GTTGTGCCAGCAAGACTGGCAGCACGCAGAAGGGGACCGAGCTGATCCCCGACTTGCGCATTATG
CCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCAT
TCCTAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAGGATGGACAACACGCTGAGGGGGA
CCGTCCGATCCCCGGCTTACACATTCTACCTCTCCGATCAGCTAAGCACCCGCATGC
Found at i:15355399 original size:26 final size:26
Alignment explanation
Indices: 15355370--15355421 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15355360 GTTGGGTTAG
15355370 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15355396 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15355422 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15356681 original size:343 final size:341
Alignment explanation
Indices: 15356076--15357003 Score: 1053
Period size: 343 Copynumber: 2.7 Consensus size: 341
15356066 CGGCTGAGCG
*
15356076 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * * * * *
15356141 GTTCATTCCTAGTGTAAGATAAGACCGGGCCGAGGGTTGCGACAGCAAGATCGGTAACACGCAGG
66 GTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTACGGCAGCAGGATCAGCAACACGCAGG
* * *
15356206 AAGGATCGGATCGATCCCAAGCTTACGGATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACACCC
131 AAGGACCGGACCGATCCCAAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACACCC
* *
15356271 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGT
196 ATTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGT
* ** * *
15356336 TGTGGTAGCGGGACTAGCAGCACGT-AGAAGGGGATCGGGCTGATCCCCGGTTTACGCATTACGC
261 TGTGGCAGCAAGACTAGCAGCAC-TCAGAAGGGGATCGGGCCGATCCCCGGCTTACGCATTACGC
*
15356400 CTCTCCGG-ATGACTCAGC
325 CTCTCCGGCA-G-CTCAAC
* * * * * *
15356418 TCCCGCACACTCGTTTAATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCAG
1 -CCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* *
15356483 AGTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTACGGCAGCAGGATCAGCAGCACGTAG
65 AGTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTACGGCAGCAGGATCAGCAACACGCAG
* * * * * * * * *
15356548 GAGGGGCCGGGCCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGGTC-GATTGAGTGCCCATACG
130 GAAGGACCGGACCGATCC-CAAGCTTACGCATTCTGCCTCTCCGGCCAG-CTGAGCGCCCACACA
** * * * *
15356611 CCTGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAG
193 CCCATTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAG
* * * *
15356676 GGTTGTGGCAGCAAGACTGGCAGCACTCAGAAGGGGATTGGGCCGATCCCCGGCTTGCGCATTAT
258 GGTTGTGGCAGCAAGACTAGCAGCACTCAGAAGGGGATCGGGCCGATCCCCGGCTTACGCATTAC
* *
15356741 GCCTCTCTGGCCAGCTTAAC
323 GCCTCTCCGG-CAGCTCAAC
* *
15356761 CCCTGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 CCC-GCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* *
15356826 AGTTCATT-CCAGGTCTAAGATCAGACCGGGCTGAGGGTTATGGCAGCAGGATC-GACAACACAC
65 AGTTCATTCCCA-GTCTAAGATCAGACCGGGCTGAGGGTTACGGCAGCAGGATCAG-CAACACGC
** * ** * * * * * *
15356889 AGGGGGGATCTGG-CCGATCCCTGGCTTGCGTATTCTGCCTCTCCAG-CTGACTGAGCGTCCGCA
128 AGGAAGGA-CCGGACCGATCCCAAGCTTACGCATTCTGCCTCTCCGGCCAG-CTGAGCGCCCACA
* * * ** *
15356952 CGCTCATTTCATGGGTTGGCTTAGGCATACTGAGTTCAATCCATGTCTAAGC
191 CACCCATTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15357004 ATACGAAGTT
Statistics
Matches: 493, Mismatches: 81, Indels: 22
0.83 0.14 0.04
Matches are distributed among these distances:
342 11 0.02
343 476 0.97
344 5 0.01
345 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (341 bp):
CCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTACGGCAGCAGGATCAGCAACACGCAGG
AAGGACCGGACCGATCCCAAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACACCC
ATTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGT
TGTGGCAGCAAGACTAGCAGCACTCAGAAGGGGATCGGGCCGATCCCCGGCTTACGCATTACGCC
TCTCCGGCAGCTCAAC
Found at i:15357005 original size:26 final size:26
Alignment explanation
Indices: 15356976--15357028 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15356966 GTTGGCTTAG
15356976 GCATACTG-AGTTCAAT-CCATGTCTAA
1 GCATAC-GAAGTTCAATCCCA-GTCTAA
*
15357002 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
15357028 G
1 G
15357029 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:15357893 original size:26 final size:26
Alignment explanation
Indices: 15357857--15357909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15357847 GTTCACTTAG
15357857 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15357883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15357909 G
1 G
15357910 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15359111 original size:26 final size:26
Alignment explanation
Indices: 15359081--15359133 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15359071 GTTGGCTTAG
* *
15359081 GCATACGGAGTTCATACCATGTCTAA
1 GCATACGAAGTTCATACCAAGTCTAA
*
15359107 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATACCAAGTCTAA
15359133 G
1 G
15359134 AATGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCAAGTCTAA
Found at i:15359321 original size:26 final size:26
Alignment explanation
Indices: 15359291--15359343 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15359281 GTTGACTTTG
*
15359291 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
15359317 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15359343 G
1 G
15359344 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15360500 original size:26 final size:26
Alignment explanation
Indices: 15360452--15360503 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15360442 GTTGACATAG
* *
15360452 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCAAGTCTAA
**
15360478 GCATACGGAGTTAATTTCAAGTCTAA
1 GCATACGGAGTTAATCCCAAGTCTAA
15360504 TATCAGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCAAGTCTAA
Found at i:15360686 original size:26 final size:26
Alignment explanation
Indices: 15360636--15360688 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15360626 ATTGGCTTAG
*
15360636 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
15360662 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15360688 G
1 G
15360689 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15361405 original size:26 final size:26
Alignment explanation
Indices: 15361369--15361421 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15361359 GTTGACTTAG
15361369 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15361395 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15361421 G
1 G
15361422 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15361935 original size:26 final size:26
Alignment explanation
Indices: 15361905--15361957 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15361895 GTTGACTTAG
15361905 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
15361931 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15361957 G
1 G
15361958 ATCGGACGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15362443 original size:26 final size:26
Alignment explanation
Indices: 15362407--15362458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15362397 TTGGCTTAGT
15362407 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
15362433 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15362459 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15362635 original size:26 final size:26
Alignment explanation
Indices: 15362605--15362657 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15362595 GTTGGCTTAG
15362605 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15362631 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15362657 G
1 G
15362658 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15363135 original size:26 final size:26
Alignment explanation
Indices: 15363096--15363148 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15363086 GTTGGCTTAG
15363096 GCATACGGAATTCATTCCCTA-TCTAA
1 GCATACGGAATTCATT-CCTAGTCTAA
* *
15363122 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
15363148 G
1 G
15363149 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:15363829 original size:26 final size:26
Alignment explanation
Indices: 15363792--15363844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15363782 GTTGACTTAG
*
15363792 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
15363818 GCATAC-GAAGTTCATTCACAGTCTAA
1 GCATACAG-AGTTCATCCACAGTCTAA
15363844 G
1 G
15363845 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:15364182 original size:160 final size:160
Alignment explanation
Indices: 15363892--15364182 Score: 358
Period size: 160 Copynumber: 1.8 Consensus size: 160
15363882 AGCACGTAGG
* * * * *
15363892 GGGGATCGGACCGATCCTGGGCTTACGCATTCGACCTCTCCGGCTGGCTGAGCACCCGCACACCT
1 GGGGATCGGACCGATCCTCGACTTACGCATTCGACCTCTCCGACTGGCTCAACACCCGCACACCT
* * * * * * *
15363957 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
66 ATTTCATGGGTTGACGTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACAGAGGGT
15364022 TGTGGCAGCGAGGACTAGCAGCATGCAGAA
131 TGTGGCAGCGAGGACTAGCAGCATGCAGAA
* *
15364052 GGGGATCGGGCCGATCCTCGACTTACGCATTATG-CCTCTCCGACTGGCTCAACA-CC-CACACG
1 GGGGATCGGACCGATCCTCGACTTACGCATT-CGACCTCTCCGACTGGCTCAACACCCGCACAC-
* *
15364114 CTCATTTCATGGGTTGACGTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACTAGACAG
64 CT-ATTTCATGGGTTGACGTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-CCAGACAG
15364177 AGGGTT
126 AGGGTT
15364183 ACGGTAGCAG
Statistics
Matches: 110, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
158 5 0.05
159 8 0.07
160 96 0.87
161 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (160 bp):
GGGGATCGGACCGATCCTCGACTTACGCATTCGACCTCTCCGACTGGCTCAACACCCGCACACCT
ATTTCATGGGTTGACGTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACAGAGGGT
TGTGGCAGCGAGGACTAGCAGCATGCAGAA
Found at i:15364719 original size:26 final size:26
Alignment explanation
Indices: 15364683--15364733 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15364673 GTTGACTTAG
*
15364683 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACAGAGTTCATCCCCAGTCTAT
*
15364709 GCATACAGAGTTCTTCCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
15364734 AGATCGAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAT
Found at i:15365018 original size:159 final size:157
Alignment explanation
Indices: 15364742--15365052 Score: 394
Period size: 159 Copynumber: 2.0 Consensus size: 157
15364732 TAAGATCGAA
* * * *
15364742 TCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGTAGGGGGGACCGGGTCGATCCCTGGCTT
1 TCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTT
* * * *
15364807 GCGCATTCTGCCTCTCCGATCAGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
66 GCGCATTCTACCTCTCCGACCAGCTGAACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
* *
15364872 GGGAGT-TCATTCCATGTCTAAGCCCCAG
131 CGAAGTAT-ATTCCATGTC-AAGCCCCAG
* * * *
15364900 TCAGATCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGGGGGACCGAGCCGATCCCCGGCT
1 TCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCT
* * * *
15364965 TGCGCATTCTACCTCTCCGACC-GACTGAATGCCCGTAGGCT-AGTTTCGTGGGTTGGCTTAGGC
65 TGCGCATTCTACCTCTCCGACCAG-CTGAACGCCCGCACGCTCA-TTTCATGGGTTGGCTTAGGC
15365028 ATACGAAGTATATTCCATGTCAAGC
128 ATACGAAGTATATTCCATGTCAAGC
15365053 ATACAGAGTT
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
158 41 0.31
159 89 0.68
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
TCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTT
GCGCATTCTACCTCTCCGACCAGCTGAACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
CGAAGTATATTCCATGTCAAGCCCCAG
Found at i:15368133 original size:17 final size:17
Alignment explanation
Indices: 15368113--15368155 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
15368103 ACTTTTCCTC
**
15368113 AAAAATTGATTTTTTTG
1 AAAAATTGATTTTTAAG
*
15368130 -AAAATTTATTTTTAAG
1 AAAAATTGATTTTTAAG
15368146 AAAAATTGAT
1 AAAAATTGAT
15368156 ACTTTCAACT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (17 bp):
AAAAATTGATTTTTAAG
Found at i:15368149 original size:60 final size:60
Alignment explanation
Indices: 15368087--15368355 Score: 422
Period size: 60 Copynumber: 4.5 Consensus size: 60
15368077 TTGTGCAGGA
* *
15368087 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
*
15368147 AAAATTGATACTTTCAACTTTTCCCTAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
*
15368207 AAAATTGATACTTTCAACTTTTCCCCAAAAA-T-A-TTTTTTGAAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAA--TTTATTTTTAAGG
* **
15368266 AAAATTGATACTTTCAACTTTTCCTCAAAAA--CCTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
15368324 AAAATTGATACTTTCAACTTTTCCCCAAAAAT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAAT
15368356 ATTCTTTTTT
Statistics
Matches: 195, Mismatches: 9, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
57 11 0.06
58 43 0.22
59 43 0.22
60 98 0.50
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
Found at i:15368334 original size:117 final size:116
Alignment explanation
Indices: 15368087--15368363 Score: 423
Period size: 117 Copynumber: 2.3 Consensus size: 116
15368077 TTGTGCAGGA
* *
15368087 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGAAAAAT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAA-T-A-TTTTTTGAAAATTTATTTTCAAGAAAAAT
*
15368152 TGATACTTTCAACTTTTCCCTAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
63 TGATACTTTCAACTTTTCCCTAAAAA-TCATTTTTTTGAAAATTTATTTTTAAGG
*
15368207 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTTTATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAA--TTTATTTTCAAGAAAAATT
*
15368272 GATACTTTCAACTTTT-CCTCAAAAA-CCTTTTTTTGAAAATTTATTTTTAAGG
64 GATACTTTCAACTTTTCCCT-AAAAATCATTTTTTTGAAAATTTATTTTTAAGG
15368324 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTT
15368364 TTGATTTTTA
Statistics
Matches: 148, Mismatches: 5, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
117 71 0.48
118 8 0.05
119 39 0.26
120 30 0.20
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTCAAGAAAAATTGA
TACTTTCAACTTTTCCCTAAAAATCATTTTTTTGAAAATTTATTTTTAAGG
Found at i:15368466 original size:5 final size:5
Alignment explanation
Indices: 15368381--15368435 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
15368371 TTATTTAAAG
*
15368381 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT --AAAAT AAAAT
15368428 AAAAT AAA
1 AAAAT AAA
15368436 GAAAAGTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
3 3 0.07
5 28 0.67
6 2 0.05
7 9 0.21
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:15368551 original size:21 final size:21
Alignment explanation
Indices: 15368498--15368540 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
15368488 AAACCTAATC
15368498 TAATAAATAAAATAAAACAAA
1 TAATAAATAAAATAAAACAAA
*
15368519 TAATAAATAAAATAAAATAAA
1 TAATAAATAAAATAAAACAAA
15368540 T
1 T
15368541 TCAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (21 bp):
TAATAAATAAAATAAAACAAA
Found at i:15369562 original size:49 final size:47
Alignment explanation
Indices: 15369435--15369562 Score: 122
Period size: 49 Copynumber: 2.7 Consensus size: 47
15369425 ATTATAGGAT
*
15369435 AAATAAAAAAT-AATAAT-AATAACAGATATATAATTAGATAAATAA
1 AAATAAAAAATAAATAATAAATAATAGATATATAATTAGATAAATAA
*
15369480 AAATACAAAAATAAATAA-AATATAAAATA-ATATATATATTA-ATAAATAG
1 AAATA-AAAAATAAATAATAA-AT--AATAGATATATA-ATTAGATAAATAA
* *
15369529 TAATAATAAATAAATAATAAATACATAGGATATA
1 AAATAAAAAATAAATAATAAATA-ATA-GATATA
15369563 AAGGAAAATA
Statistics
Matches: 68, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
45 5 0.07
46 7 0.10
47 9 0.13
48 15 0.22
49 25 0.37
50 7 0.10
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (47 bp):
AAATAAAAAATAAATAATAAATAATAGATATATAATTAGATAAATAA
Found at i:15369602 original size:8 final size:8
Alignment explanation
Indices: 15369589--15369627 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
15369579 TAAAATATAG
*
15369589 AATAAAAT
1 AATAAAAA
15369597 AATAAAAA
1 AATAAAAA
15369605 AAT-AAAA
1 AATAAAAA
15369612 AATAACAAA
1 AATAA-AAA
15369621 AATAAAA
1 AATAAAA
15369628 TTGAACTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 8 0.29
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:15369610 original size:16 final size:17
Alignment explanation
Indices: 15369589--15369628 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
15369579 TAAAATATAG
15369589 AATAAAATAATAA-AAA
1 AATAAAATAATAACAAA
15369605 AATAAAA-AATAACAAA
1 AATAAAATAATAACAAA
15369621 AATAAAAT
1 AATAAAAT
15369629 TGAACTTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAATAATAACAAA
Found at i:15369615 original size:23 final size:24
Alignment explanation
Indices: 15369580--15369627 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
15369570 ATATATACAT
* * *
15369580 AAAATATAGAATAA-AATAATAAA
1 AAAATAAAAAATAACAAAAATAAA
15369603 AAAATAAAAAATAACAAAAATAAA
1 AAAATAAAAAATAACAAAAATAAA
15369627 A
1 A
15369628 TTGAACTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (24 bp):
AAAATAAAAAATAACAAAAATAAA
Found at i:15370087 original size:26 final size:26
Alignment explanation
Indices: 15370057--15370109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15370047 GTTGACTTAG
* *
15370057 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
15370083 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15370109 G
1 G
15370110 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15370546 original size:26 final size:26
Alignment explanation
Indices: 15370496--15370548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15370486 GTTGGCTTAG
*
15370496 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15370522 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15370548 G
1 G
15370549 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15370906 original size:25 final size:26
Alignment explanation
Indices: 15370872--15370923 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
15370862 GTTGACTTAG
15370872 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15370897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15370923 G
1 G
15370924 ATTAGCCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15371191 original size:159 final size:160
Alignment explanation
Indices: 15371004--15371399 Score: 403
Period size: 159 Copynumber: 2.5 Consensus size: 160
15370994 GCGTATTCTG
* * * *
15371004 CCTCTCCGATCGACTGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGATCGACTCAGCGCCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* ** * *
15371069 TCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAAGACCAACAGCATG-CAGAGGGG
66 TCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAGCAAGACCAACAGCACGAAAG-GGGG
* * *
15371132 GA-TCGGGTCGATCCTC-GACTTGCACATTATG
130 GACT-GGGCCGATCCCCAG-CTTGCACATTATA
* ** * * **
15371163 CCTCTTCGATCGGTTCAGCGTCC-ACACGCTCGTTTCGTGGGTTGACTTATGCAT-GCATAGTTC
1 CCTCTCCGATCGACTCAGCG-CCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATAG-GGAGTTC
* * * * * *
15371226 ATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCAGCAGTAGGATCGACAGCACGAAAGGG
64 ATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAGCAAGACCAACAGCACGAAAGGG
* *
15371289 GGGACTGGGCCGATCCCCAGCTTGCGCATTCTA
128 GGGACTGGGCCGATCCCCAGCTTGCACATTATA
* * * *
15371322 CCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGACTCAGCGCCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
15371387 TCCATGTCTAAGC
66 TCCATGTCTAAGC
15371400 GTACGGAGTT
Statistics
Matches: 188, Mismatches: 38, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
158 9 0.05
159 170 0.90
160 9 0.05
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
CCTCTCCGATCGACTCAGCGCCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCACCAGACCGGACCGAGGGTTGCAGCAGCAAGACCAACAGCACGAAAGGGGGG
ACTGGGCCGATCCCCAGCTTGCACATTATA
Found at i:15371411 original size:26 final size:26
Alignment explanation
Indices: 15371375--15371424 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15371365 GGCTTAGGCA
15371375 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
15371401 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15371425 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:15371797 original size:26 final size:26
Alignment explanation
Indices: 15371768--15371820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15371758 GTTGACTTAG
15371768 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15371794 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15371820 G
1 G
15371821 ATCGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15377934 original size:157 final size:158
Alignment explanation
Indices: 15377644--15378052 Score: 516
Period size: 157 Copynumber: 2.6 Consensus size: 158
15377634 TCATGACACC
* * ** * * * **
15377644 CGGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGAATTA
1 CGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
*
15377709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAAGGTTGTGGTAGCAAGATCGAC
66 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAAGGTTGTGGCAGCAAGATCGAC
* * *
15377774 AGCACGTA-GGGGGACCGGGTCGATCCT
131 AGCACGAAGGGGGGACCAGGCCGATCCT
* * *
15377801 CGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
1 CGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
* ** * * *
15377866 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGTTGTGGCAGCAGGATTGGC
66 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAAGGTTGTGGCAGCAAGATCGAC
*
15377931 AGCACGAAGGGGGGGATCAGGCCGATCCT
131 AGCACGAA-GGGGGGACCAGGCCGATCCT
* * * * * *
15377960 CGGCTTGCACATTCTACCTCTCCGGCCGGTTGAGCGCCCGTACACTCGTTTTGTGGGTTGGCTTA
1 CGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
*
15378025 GGCATACGGAGTGCATT-CCATGTCTAAG
66 GGCATACGGAGTTCATTCCCA-GTCTAAG
15378053 CCCCAGCCGG
Statistics
Matches: 215, Mismatches: 34, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
157 118 0.55
158 3 0.01
159 94 0.44
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAAACCGAAGGTTGTGGCAGCAAGATCGAC
AGCACGAAGGGGGGACCAGGCCGATCCT
Found at i:15378027 original size:159 final size:157
Alignment explanation
Indices: 15377680--15378052 Score: 478
Period size: 159 Copynumber: 2.4 Consensus size: 157
15377670 CGACTCAGCG
* * * **
15377680 CCCGCACGCTCATTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
1 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * *
15377745 AAACCGAAGGTTGTGGTAGCAAGATCGACAGCACGTAGGGGGACCGGGTCGATCCTCGGCTTACG
66 AAACCGAAGGTTGTGGCAGCAAGATCGACAGCACGAAGGGGGACCAGGCCGATCCTCGGCTTACA
* *
15377810 CATTCTGCCTCTCCGATCGGTTGAGCA
131 CATTCTACCTCTCCGACCGGTTGAGCA
* *
15377837 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACT
1 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
** * * * * *
15377902 GGACCGAAGGTTGTGGCAGCAGGATTGGCAGCACGAAGGGGGGGATCAGGCCGATCCTCGGCTTG
66 AAACCGAAGGTTGTGGCAGCAAGATCGACAGCACGAA--GGGGGACCAGGCCGATCCTCGGCTTA
* *
15377967 CACATTCTACCTCTCCGGCCGGTTGAGCG
129 CACATTCTACCTCTCCGACCGGTTGAGCA
* * *
15377996 CCCGTACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTGCATT-CCATGTCTAAG
1 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
15378053 CCCCAGCCGG
Statistics
Matches: 187, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
157 90 0.48
158 3 0.02
159 94 0.50
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
AAACCGAAGGTTGTGGCAGCAAGATCGACAGCACGAAGGGGGACCAGGCCGATCCTCGGCTTACA
CATTCTACCTCTCCGACCGGTTGAGCA
Found at i:15378240 original size:26 final size:26
Alignment explanation
Indices: 15378210--15378260 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378200 GTTGACTTTG
15378210 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
15378236 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
15378261 TGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15378779 original size:159 final size:158
Alignment explanation
Indices: 15378236--15378896 Score: 607
Period size: 159 Copynumber: 4.2 Consensus size: 158
15378226 TCCAGTCTAA
* *
15378236 GCATACGGAGTTCATTCCCAGTCTATGATCGGATCAGACCGAGGGTTACGGCTGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAGGATCGACA
* * * * * * *
15378301 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTGTGCCTCTACGGTCAGCTCAGCGCT
66 GCACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCACC
* * * * *
15378366 CGCACACTCATTTTATCGGTTGACTTGG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
** * * *
15378394 GCATACAAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGTGGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAGGATCGACA
** * * * * * *
15378459 GCACGTAGGGGGGACTGAGCCGATCCCCAACTTACGCATTCTGCCTCTCCAGTCGGTTGAGCACC
66 GCACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCACC
* * * **
15378524 CGCATGCCCGTTTCGTGGGTTGGTTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* ** * * ** *
15378552 GCATAGGGAGTTCATT-CCATGTCTAAGA-CCCAGTCAGACTGAGGATTGTGGCAGT-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCAGACCGAGGGTTACGGCAGTAG-GATCG
** * * * * * *
15378614 GTAGCACATAGAGGGGGA-TCGGGCCGATCCTCAGCTTGTGCATTATGCCTTTTCGG-CTGGCTC
63 ACAGCACACAG-GGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GGCTC
* *
15378677 AGCACCCGCATGCTCGTTTCATGGGTTGACTTAT
125 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
15378711 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTAAGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAGGATCGACA
* * * * *
15378776 GCACACAAGGGGGGATTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACTGGCTGAGCG
66 GCACAC-AGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GGCTCAGCA
* * *
15378840 CCCGTACGCTCGTTTCATTGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGACTTAG
*
15378870 GCATACGGAGTCCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15378897 CATACGGAGT
Statistics
Matches: 401, Mismatches: 89, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.01
158 185 0.46
159 202 0.50
160 8 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAGGATCGACA
GCACACAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:15378899 original size:26 final size:26
Alignment explanation
Indices: 15378870--15378922 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378860 GTTGGCTTAG
15378870 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
*
15378896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15378922 G
1 G
15378923 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15379643 original size:26 final size:26
Alignment explanation
Indices: 15379593--15379645 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15379583 GTTGACTTAG
* *
15379593 GCATTCAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15379619 GCATACAGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15379645 G
1 G
15379646 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15380243 original size:26 final size:26
Alignment explanation
Indices: 15380207--15380258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15380197 TTCGGCTTAG
15380207 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15380233 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15380259 TATCAAACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15381300 original size:26 final size:26
Alignment explanation
Indices: 15381270--15381322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15381260 GTTGACTTAG
15381270 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15381296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15381322 G
1 G
15381323 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15381692 original size:159 final size:158
Alignment explanation
Indices: 15381296--15381838 Score: 410
Period size: 159 Copynumber: 3.4 Consensus size: 158
15381286 CCCAGTCTAA
* * * *
15381296 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCAGATTAAGGGTTGCGGTAGCAGGATCGAA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ATCGGACTGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
15381360 AGCACGTAGG-GGGGACCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCAGGCTGAGTG
64 AGCAAGTAGGAGGGGATCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCTGGCAGGCTGAGCG
* *
15381424 CCCGTACACCCGTTTCGTGGGTTGGCTTAG
129 CCCGTACACCCATTTCGTGGGTTGACTTAG
* ** * * *
15381454 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCT-GC-GAGACCG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCGG-TAGCAG-GATCG
* * * *
15381516 ACAGCAAGCA-GAGGGGGATCGGGCCGATCCTCGACTTGCGCATTAC-CCCTCTCTGGCCGGTTT
62 ACAGCAAGTAGGA-GGGGATCGGGCCGATCCTCGACTTGCGCATT-CTCCCTCTCTGGCAGGCTG
* * *
15381579 AGCGCCCGTACGCTCATTTTGTGGGTTGACTTAG
125 AGCGCCCGTACACCCATTTCGTGGGTTGACTTAG
* * * *
15381613 GCATATGGAGCTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGTAGCAGGATAGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACA
*** *** * * * * *
15381678 GTTTGTAGGAGGGGATCGGGTTAATCC-CTGGCTTACACATTCTACCTCTCTGGTCA-ACTGAGC
65 GCAAGTAGGAGGGGATCGGGCCGATCCTC-GACTTGCGCATTCTCCCTCTCTGG-CAGGCTGAGC
* * * *
15381741 ACCC--ACACCATCGTTTCATGGGTTGGCTTAG
128 GCCCGTACACC--CATTTCGTGGGTTGACTTAG
** * * *
15381772 GCATACGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGA-TCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACT-GAGGGTTGCGGTAGCAGGATCGA
15381835 CAGC
63 CAGC
15381839 GGGATCGACA
Statistics
Matches: 298, Mismatches: 66, Indels: 41
0.74 0.16 0.10
Matches are distributed among these distances:
157 8 0.03
158 57 0.19
159 223 0.75
160 10 0.03
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAG
CAAGTAGGAGGGGATCGGGCCGATCCTCGACTTGCGCATTCTCCCTCTCTGGCAGGCTGAGCGCC
CGTACACCCATTTCGTGGGTTGACTTAG
Found at i:15382284 original size:26 final size:26
Alignment explanation
Indices: 15382253--15382305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15382243 GTTGACTTAG
15382253 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15382279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15382305 G
1 G
15382306 ATTGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15382625 original size:26 final size:26
Alignment explanation
Indices: 15382596--15382648 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15382586 GTTGGCTTAG
*
15382596 GCATACGGGGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15382622 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15382648 G
1 G
15382649 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15383000 original size:26 final size:26
Alignment explanation
Indices: 15382964--15383016 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15382954 GTTGACTTAG
15382964 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15382990 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15383016 G
1 G
15383017 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15383199 original size:355 final size:350
Alignment explanation
Indices: 15381880--15383331 Score: 1058
Period size: 355 Copynumber: 4.1 Consensus size: 350
15381870 TGATCTTCGG
* * * * *
15381880 CTTAGGCATATGGAGTTCAT-TCCATGTCTACGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
1 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** * *
15381944 TCGGATCGAGGGTTGCAGTAACAGGACCAGTAGCAGGATTAACAGCACACAGGGGGGGACCGAGT
65 CCGGACCGAGGG-T----T-A-AGG--C---AGCAGGATCGA-AGCACGCA-GGGGGGACCGGGT
* * * * * * * **
15382009 CGATCCTCAGCTTGTAG-ATTTTGCCTCTCCGGTTGGCTGAGCACCCGTATGCTTGTTTTGTGGG
116 CGATCCCCAGCTTGT-GCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGG
* * * * * *
15382073 TTTGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAACCAGACC-ATGGGTTGTGGTAGT
180 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGA-GGGTTGTGGCAGC
* * **
15382137 AGGACCGACAGCGGCATCGATAGCACGCAG-AGAGGGATCAGGCTGATCCTCGGCTTACGCATTA
244 AGGACCGGCAG-GG-AT-GACAGCA-GCAGAAG-GGGATCAGGCTGATCCTCGGCTTGTGCATTA
* * ** * *
15382201 TGCCTCT-TCGACCGGTTGAGCACCCATACGCTCGTTTTGTGGGTTGA
304 TGCCTCTCT-GGCCGGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGA
*
15382248 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAA
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * ** * * * ** * *
15382312 TCAGATCGAGGGTTGCGGTAGCAAGATCGGAAGCACGTAGGGGGGACCGGACCGATCCTCGGCTT
65 CCGGACCGAGGGTTAAGGCAGCAGGATC-GAAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTT
** * * ** * * **
15382377 ACGCATTCTACCTTTCTGG-CAGGCTGAGTGCCCACACAAC-CGTTTCATGGGTTAACTTAGGCA
129 GTGCATTCTACCTCTCCGGTC-GGCTGAGCACCCGCAC-GCTCGTTTCATGGGTTGGCTTAGGCA
* * * * * * *
15382440 TAGGGAGTTCATTCCATGTCTAAACCCC-AGCTGGACCGAGGGTTGTTGTAGCAAGATCGGC---
192 TACGGAGTTCATTCCATGTCTAAGCCCCAATC-GGACCGAGGGTTGTGGCAGCAGGACCGGCAGG
* * * ** * * * * *
15382501 -A-G-CA-C-GCAGAGGGGGACCGGGCCAATCCCCGGCTTGCT-CATTCTGCATCTCCGGTCGGT
256 GATGACAGCAGCAGAAGGGGATCAGGCTGATCCTCGGCTTG-TGCATTATGCCTCTCTGGCCGGT
* * * *
15382560 TGAGCGCCTGCATGCTTGTTTCGAGGGTTGG
320 TGAGCGCCCGCACGCTTGTTTCGTGGGTTGA
* * *
15382591 CTTAGGCATACGGGGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
1 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * **
15382655 CCGGACAGAGGGTTCCGACAACAGGACCAGTAGCAGGATTGGCAGCACGCAGGGGGGGATTGGG-
65 CCGGACCGAGGGTT------A-AGG--C---AGCAGGA-TCGAAGCACGCA-GGGGGGACCGGGT
* ** * * **
15382719 CTGAT-CCCTGACTTGTGCATTCTACCTCTTTGGCCGGTTGAGTGCCCGCACGCTCGTTTCATGG
116 C-GATCCCCAG-CTTGTGCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGG
* *
15382783 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGTTTGTGGCAGC
179 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGC
* *
15382848 AGGACAGGCAGAGGGATTGACAGCATGCAGAAGGGGATCTGGCTGATCCTCGGCTTGTGCATTAT
244 AGGACCGGC--AGGGA-TGACAGCA-GCAGAAGGGGATCAGGCTGATCCTCGGCTTGTGCATTAT
** * *
15382913 GCCTCTCTGGCCGACTGAGTGCCCGCACGTTTGTTTCGTGGGTTGA
305 GCCTCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGA
15382959 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
15383024 CGGACCGAGGGTTATGGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCCCAGCTTG
66 CGGACCGAGGGTTAAGGCAGCAGGATCGA-AGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTG
* * * * * *
15383089 TGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAG
130 TGCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * *
15383154 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCGGGACCGGC----A-G
195 GGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGGGATG
* * * * * * *
15383214 -CA--AGTAGAGGGGGATCAGG-TCGATCCTTGACTTGCGCATTACGCCTCTCTGGCGGGCTT-A
260 ACAGCAGCAGAAGGGGATCAGGCT-GATCCTCGGCTTGTGCATTATGCCTCTCTGGCCGG-TTGA
* **
15383274 GCGCCCGTACGCTCATTTCGTGGGTTGA
323 GCGCCCGCACGCTTGTTTCGTGGGTTGA
* * * *
15383302 CTTAGGCATACGAAGCTCATTCTCAGTCTA
1 CTTAGGCATACGGAGTTCATCCCCAGTCTA
15383332 CATCAGATCG
Statistics
Matches: 861, Mismatches: 172, Indels: 127
0.74 0.15 0.11
Matches are distributed among these distances:
342 4 0.00
343 215 0.25
344 4 0.00
345 1 0.00
346 3 0.00
347 2 0.00
349 2 0.00
350 2 0.00
354 3 0.00
355 253 0.29
356 148 0.17
357 4 0.00
359 1 0.00
361 4 0.00
362 2 0.00
363 1 0.00
364 1 0.00
365 2 0.00
366 1 0.00
367 3 0.00
368 199 0.23
369 6 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (350 bp):
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACCGAGGGTTAAGGCAGCAGGATCGAAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGT
GCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGGGATGA
CAGCAGCAGAAGGGGATCAGGCTGATCCTCGGCTTGTGCATTATGCCTCTCTGGCCGGTTGAGCG
CCCGCACGCTTGTTTCGTGGGTTGA
Found at i:15383293 original size:159 final size:160
Alignment explanation
Indices: 15383090--15383532 Score: 424
Period size: 158 Copynumber: 2.8 Consensus size: 160
15383080 CCCAGCTTGT
* ** ** *
15383090 GCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGC-TTGTTTCGTGGGTTGGCTTAGGCATAG
1 GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCAC-CATCATTTCGTGGGTTGGCTTAGGCATAC
* * *
15383154 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCT-GCGGGACCGGCAGCAAG
65 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTAGCAGGACAGACAGCAAG
* * * *
15383218 TA-GAGGGGGATCAGGTC-GATCCTTGACTTGC
130 TAGGA-GGGGA-CAGGGCTAATCCCTGACTTAC
* * * * * *
15383249 GCATTAC-GCCTCTCTGG-CGGGCTTAGCGCCCGTACGC-TCATTTCGTGGGTTGACTTAGGCAT
1 GCATT-CTGCCTCTCCGGTC-GACTGAGCACCCGCAC-CATCATTTCGTGGGTTGGCTTAGGCAT
* * ** * * *
15383311 ACGAAGCTCATTCTCA-GTCT-A-CATCAGATCGGACTGAGGGTTGTAG-TAGCAGGATAGACAG
63 ACGGAGTTCATTC-CATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCTAGCAGGACAGACAG
* * *
15383372 CATGTAGGAGGGGACCGGGCTAATCCCTGGCTTAC
126 CAAGTAGGAGGGGACAGGGCTAATCCCTGACTTAC
* *
15383407 GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTTCATGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCATTTCGTGGGTTGGCTTAGGCATACG
* * *
15383472 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC-AGTAGGACCGACAGCA
66 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTAGCAGGACAGACAGCA
15383533 GGATCGACAG
Statistics
Matches: 225, Mismatches: 45, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
157 13 0.06
158 110 0.49
159 95 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTAGCAGGACAGACAGCAAGT
AGGAGGGGACAGGGCTAATCCCTGACTTAC
Found at i:15383308 original size:711 final size:711
Alignment explanation
Indices: 15381880--15383331 Score: 1599
Period size: 711 Copynumber: 2.0 Consensus size: 711
15381870 TGATCTTCGG
* * * *
15381880 CTTAGGCATATGGAGTTCATTCCATGTCTACGCATACAGAGTTCATTCCCAGTCTAAGATCGGAT
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* *
15381945 CGGATCGAGGGTTGCAGTAACAGGACCAGTAGCAGGATTAACAGCACACAGGGGGGGACCGAGTC
66 CGGATCGAGGGTTCCAGCAACAGGACCAGTAGCAGGATTAACAGCACACAGGGGGGGACCGAGTC
* * ** * * * **
15382010 GATCCTCAGCTTGTAGATTTTGCCTCTCCGGTTGGCTGAGCACCCGTATGCTTGTTTTGTGGGTT
131 GATCCTCAGCTTGTAGATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
* * * * *
15382075 TGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAACCAGACCATGGGTTGTGGTAGTAGG
196 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGACCATGGGTTGTGGCAGCAGG
* * *
15382140 ACCGACAGCGGCATCGATAGCACGCAGAGAGGGATCAGGCTGATCCTCGGCTTACGCATTATGCC
261 ACAGACAGAGGCATCGACAGCACGCAGAGAGGGATCAGGCTGATCCTCGGCTTACGCATTATGCC
** * *
15382205 TCTTCGACCGGTTGAGCACCCATACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCC
326 TCTTCGACCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
* * * * *
15382270 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCAGATCGAGGGTTGCGGTAGCA
391 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTACGGCAGCA
* * * * *
15382335 AGATCGGAAGCACGTAGGGGGGACCGGACCGATCCTCGGCTTACGCATTCTACCTTTCTGGCAGG
456 AGATCGGAAGCACGCAGGGGGGACCGGACCGATCCCCAGCTTACGCATTCTACCTCTCCGGCAGG
**
15382400 CTGAGTGCCCACACAACCGTTTCATGGGTTAACTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
521 CTGAGCACCCACACAACCGTTTCATGGGTTAACTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
* * * *
15382465 CCCAGCTGGACCGAGGGTTGTTGTAGCAAGATCGGCAGCACGCAGAGGGGGACCGGGCCAATCCC
586 CCCAGCTGGACCGAGGGTTGTGGTAGCAAGACCGGCAGCAAGCAGAGGGGGACCAGGCCAATCCC
* * * * ** *
15382530 CGGCTTGCTCATTCTGCATCTCCGGTCGGTTGAGCGCCTGCATGCTTGTTTCGAGGGTTGG
651 CGACTTGCGCATTCTGCATCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCGAGGGTTGA
* * *
15382591 CTTAGGCATACGGGGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
** * **
15382656 CGGA-CAGAGGGTTCC-GACAACAGGACCAGTAGCAGGATTGGCAGCACGCAGGGGGGGATTG-G
66 CGGATC-GAGGGTTCCAG-CAACAGGACCAGTAGCAGGATTAACAGCACACAGGGGGGGACCGAG
* * ** * **
15382718 GCTGATCC-CTGACTTGT-GCATTCTACCTCTTTGGCCGGTTGAGTGCCCGCACGCTCGTTTCAT
129 TC-GATCCTCAG-CTTGTAG-ATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCAT
* * *
15382781 GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAATCGGACCGA-GGTTTGTGGC
191 GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGACC-ATGGGTTGTGGC
* * * * * **
15382845 AGCAGGACAGGCAGAGGGATTGACAGCATGCAGA-AGGGGATCTGGCTGATCCTCGGCTTGTGCA
255 AGCAGGACAGACAGAGGCATCGACAGCACGCAGAGA-GGGATCAGGCTGATCCTCGGCTTACGCA
* ** * * *
15382909 TTATGCCTC-TCTGGCCGACTGAGTGCCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGGA
319 TTATGCCTCTTC-GACCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
15382973 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTT
383 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACCAGACCGAGGGTT
* * * ** ** *
15383037 ATGGCAGCAGGATC-GATAGCATGCAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCT
447 ACGGCAGCAAGATCGGA-AGCACGCAGGGGGGACCGGACCGATCCCCAGCTTACGCATTCTACCT
* * * * * * **
15383101 CTCCGATC-GGTTGAGCACCCGCAC-GCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT
511 CTCCG-GCAGGCTGAGCACCCACACAAC-CGTTTCATGGGTTAACTTAGGCATAGGGAGTTCATT
* ** *
15383164 CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCT-GCGGGACCGGCAGCAAGTAGAGGGGG
574 CCATGTCTAAACCCCAGCT-GGACCGAGGGTTGTGG-TAGCAAGACCGGCAGCAAGCAGAGGGGG
* * * ** * * *
15383227 ATCAGGTCGATCCTTGACTTGCGCATTAC-GCCTCTCTGG-CGGGCTT-AGCGCCCGTACGCTCA
637 ACCAGGCCAATCCCCGACTTGCGCATT-CTGCATCTCCGGTC-GG-TTGAGCGCCCGCACGCTCA
*
15383289 TTTCGTGGGTTGA
699 TTTCGAGGGTTGA
* *
15383302 CTTAGGCATACGAAGCTCATTCTCA-GTCTA
1 CTTAGGCATACGGAGTTCATTC-CATGTCTA
15383332 CATCAGATCG
Statistics
Matches: 609, Mismatches: 114, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
710 15 0.02
711 585 0.96
712 9 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (711 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CGGATCGAGGGTTCCAGCAACAGGACCAGTAGCAGGATTAACAGCACACAGGGGGGGACCGAGTC
GATCCTCAGCTTGTAGATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGACCATGGGTTGTGGCAGCAGG
ACAGACAGAGGCATCGACAGCACGCAGAGAGGGATCAGGCTGATCCTCGGCTTACGCATTATGCC
TCTTCGACCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTACGGCAGCA
AGATCGGAAGCACGCAGGGGGGACCGGACCGATCCCCAGCTTACGCATTCTACCTCTCCGGCAGG
CTGAGCACCCACACAACCGTTTCATGGGTTAACTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
CCCAGCTGGACCGAGGGTTGTGGTAGCAAGACCGGCAGCAAGCAGAGGGGGACCAGGCCAATCCC
CGACTTGCGCATTCTGCATCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCGAGGGTTGA
Found at i:15383974 original size:26 final size:26
Alignment explanation
Indices: 15383943--15383995 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15383933 GTTGACTTAG
15383943 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15383969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15383995 G
1 G
15383996 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15384336 original size:26 final size:26
Alignment explanation
Indices: 15384287--15384339 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15384277 GTTGGCTTAG
* *
15384287 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15384313 GCATACAGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
15384339 G
1 G
15384340 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15384685 original size:26 final size:26
Alignment explanation
Indices: 15384655--15384707 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15384645 GTTGACTTAG
* *
15384655 GCATACGGCGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15384681 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15384707 G
1 G
15384708 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15384875 original size:26 final size:26
Alignment explanation
Indices: 15384839--15384891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15384829 GTTGACTTAG
15384839 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15384865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15384891 G
1 G
15384892 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15384912 original size:184 final size:183
Alignment explanation
Indices: 15384596--15385050 Score: 660
Period size: 184 Copynumber: 2.5 Consensus size: 183
15384586 CCCCGGCTTA
* * * *
15384596 CGCATTATGCCTCTCCGGTCGACTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCC-GTCGGCTGAGCACCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATAC
* * *
15384661 GGCGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
65 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGG
* * * *
15384726 TTACGGTAGTAGGATCGATAGCACGCAGGGGGGACTGGGTCGATCCCTAACTTG
130 TTACGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTG
* *
15384780 CGCATTCTGCCTCTCCAGTCGGCTGAGCATCTGCACGTTTGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCC-GTCGGCTGAGCACCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATAC
*
15384845 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGG
65 GGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGG
* * *
15384910 TTATGGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCCCAGCTTG
130 TTACGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTG
* * * * *
15384964 TGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCG-TCGGCTGAGCACCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATAC
*
15385029 GGAGTTCAT-TCCATGTCTAAGC
65 GGAGTTCATCCCCA-GTCTAAGC
15385051 CCCAGTCGGA
Statistics
Matches: 243, Mismatches: 26, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
183 4 0.02
184 239 0.98
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (183 bp):
CGCATTCTGCCTCTCCGTCGGCTGAGCACCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGT
TACGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTG
Found at i:15385168 original size:159 final size:159
Alignment explanation
Indices: 15384965--15385408 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 159
15384955 CCCAGCTTGT
* ** ** *
15384965 GCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGC-TTGTTTCGTGGGTTGGCTTAGGCATAG
1 GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCAC-CATCATTTCGTGGGTTGGCTTAGGCATAC
* * *
15385029 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCT-GCGGGACCGGCAGCAAG
65 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG-TAGCAGGACAGACAGCAAG
* * * *
15385093 TA-GAGGGGGATCAGGTC-GATCCTTGACTTGC
129 TAGGA-GGGGA-CAGGGCTAATCCCTGACTTAC
* * * * * *
15385124 GCATTAC-GCCTCTCTGG-CGGGCTTAGCGCCCGTACGC-TCATTTCGTGGGTTGACTTAGGCAT
1 GCATT-CTGCCTCTCCGGTC-GACTGAGCACCCGCAC-CATCATTTCGTGGGTTGGCTTAGGCAT
* * ** * ** *
15385186 ACGAAGCTCATTCTCA-GTCT-A-CAATCAGATCGGACTGAGGGTTGCAGTAGCAGGATAGACAG
63 ACGGAGTTCATTC-CATGTCTAAGC-CCCAG-TCGGACCGAGGGTTGTGGTAGCAGGACAGACAG
* * *
15385248 CATGTAGGAGGGGACCGGGCTAATCCCTGGCTTAC
125 CAAGTAGGAGGGGACAGGGCTAATCCCTGACTTAC
* * *
15385283 GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTGCATGGGTTGGCTTAGGCATACG
1 GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCATTTCGTGGGTTGGCTTAGGCATACG
* * *
15385348 GAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGTAGGACCGACAGCA
66 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACAGACAGCA
15385409 GGATCGACAG
Statistics
Matches: 223, Mismatches: 48, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
157 1 0.00
158 14 0.06
159 197 0.88
160 10 0.04
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACAGACAGCAAGTA
GGAGGGGACAGGGCTAATCCCTGACTTAC
Found at i:15385857 original size:26 final size:26
Alignment explanation
Indices: 15385821--15385873 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15385811 GTTGACTTAG
15385821 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15385847 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
15385873 G
1 G
15385874 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:15386150 original size:159 final size:159
Alignment explanation
Indices: 15385949--15386385 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 159
15385939 CAACTTGCGT
* * ** *
15385949 ATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGC-TTGTTTCGTGGGTTGGCTTAGGCATAGGG
1 ATTCTGCCTCTCCGGTCGACTGAGCACCCGCAC-CATCATTTCGTGGGTTGGCTTAGGCATACGG
*
15386013 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCGGGACCGGCAGCAAGTA-
65 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCAGGACCGGCAGCAAGTAG
* * * *
15386077 GAGGGGGATCAGGTC-GATCCTTGACTTGCGC
130 GA-GGGGA-CAGGGCTAATCCCTGACTTACGC
* * * * * *
15386108 ATTAC-GCCTCTCTGG-CGGGCTTAGCGCCCGTACGC-TCATTTCGTGGGTTGACTTAGGCATAC
1 ATT-CTGCCTCTCCGGTC-GACTGAGCACCCGCAC-CATCATTTCGTGGGTTGGCTTAGGCATAC
* * ** * ** ** *
15386170 GAAGCTCATTCTCA-GTCT-A-CAATCAGATCGGACTGAGGGTTGCAG-TAGCAGGATAGACAGC
63 GGAGTTCATTC-CATGTCTAAGC-CCCAG-TCGGACCGAGGGTTGTGGCT-GCAGGACCGGCAGC
* * *
15386231 ATGTAGGAGGGGACCGGGCTAATCCCTGGCTTACGC
124 AAGTAGGAGGGGACAGGGCTAATCCCTGACTTACGC
* * *
15386267 ATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTGCATGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCATTTCGTGGGTTGGCTTAGGCATACGGA
* *
15386332 GTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCAGGACCGG
66 GTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCAGGACCGG
15386386 TAGCGGGATC
Statistics
Matches: 215, Mismatches: 48, Indels: 30
0.73 0.16 0.10
Matches are distributed among these distances:
157 1 0.00
158 14 0.07
159 189 0.88
160 10 0.05
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
ATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCATTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCAGGACCGGCAGCAAGTAGG
AGGGGACAGGGCTAATCCCTGACTTACGC
Found at i:15386690 original size:982 final size:982
Alignment explanation
Indices: 15384820--15386936 Score: 3754
Period size: 982 Copynumber: 2.2 Consensus size: 982
15384810 CTGCACGTTT
15384820 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *
15384885 GTCTAAGATCAGACCGAACCGAGGGTTATGGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGT
66 GTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGT
* * *
15384950 CGATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTTGTTTCGTGGGT
131 CGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTTGTTTCGTGGGT
15385015 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCGG
196 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCGG
15385080 GACCGGCAGCAAGTAGAGGGGGATCAGGTCGATCCTTGACTTGCGCATTACGCCTCTCTGGCGGG
261 GACCGGCAGCAAGTAGAGGGGGATCAGGTCGATCCTTGACTTGCGCATTACGCCTCTCTGGCGGG
15385145 CTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGCTCATTCTCAGTCTACAA
326 CTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGCTCATTCTCAGTCTACAA
15385210 TCAGATCGGACTGAGGGTTGCAGTAGCAGGATAGACAGCATGTAGGAGGGGACCGGGCTAATCCC
391 TCAGATCGGACTGAGGGTTGCAGTAGCAGGATAGACAGCATGTAGGAGGGGACCGGGCTAATCCC
15385275 TGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTGCATGGGTTGGCTTA
456 TGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTGCATGGGTTGGCTTA
* * *
15385340 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGTAGGACCGAC
521 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCAGGACCGAC
*
15385405 AGCAGGATCGACAGCACGCAGAGAGGGACCAGGTTGATCCCCGAGTTAGACATATGGAGTTCATT
586 AGCAGGATCGACAGCACGCAGAGAGGGACCAGGCTGATCCCCGAGTTAGACATATGGAGTTCATT
*
15385470 CCATGTCTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGC
651 CCATGTCTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGC
*
15385535 AGGACCAGTAGCAGGATTAACAGCACACAGGGGGGACCGAGCCGATCCTCGGCTTGTAGATTTTG
716 AGGACCAGTAGCAGGATTAACAGCACACAGGGGGGACCGAGCCGATCCTCGACTTGTAGATTTTG
* *
15385600 CCTCTCCGGTTGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCAT
781 CCTCTCCGATTGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTTGCTTAGGCATACGGAGTTCAT
*
15385665 TCCATGTCTAAGCCCCAACCGGACCATGGGTTGTGCTAGTAGGATCGACAGCGGCATCGACAGCA
846 TCCATGTCTAAGCCCCAACCGGACCATGGGTTGTGCTAGTAGGACCGACAGCGGCATCGACAGCA
* *
15385730 TGCAGAGGGGGATCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCTGA-CTGGTTGAGCACCC
911 TGCAGAGGGGGATCAGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATC-GGTTGAGCACCC
*
15385794 GTACGCTC
975 GTACACTC
* *
15385802 GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
*
15385867 GTCTAAGATCAGACCGAACCGAGGGTTACGGCGGCAGGATCGATAGCACGCAGGGGGGACCGGGT
66 GTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGT
* * *
15385932 CGATCCCCAACTTGCGTATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTTGTTTCGTGGGT
131 CGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTTGTTTCGTGGGT
15385997 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCGG
196 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCGG
15386062 GACCGGCAGCAAGTAGAGGGGGATCAGGTCGATCCTTGACTTGCGCATTACGCCTCTCTGGCGGG
261 GACCGGCAGCAAGTAGAGGGGGATCAGGTCGATCCTTGACTTGCGCATTACGCCTCTCTGGCGGG
15386127 CTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGCTCATTCTCAGTCTACAA
326 CTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGCTCATTCTCAGTCTACAA
15386192 TCAGATCGGACTGAGGGTTGCAGTAGCAGGATAGACAGCATGTAGGAGGGGACCGGGCTAATCCC
391 TCAGATCGGACTGAGGGTTGCAGTAGCAGGATAGACAGCATGTAGGAGGGGACCGGGCTAATCCC
15386257 TGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTGCATGGGTTGGCTTA
456 TGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTGCATGGGTTGGCTTA
* **
15386322 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCAGGACCGGT
521 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCAGGACCGAC
* ** * *
15386387 AGCGGGATCGACAGCACGCAGAGAGGGACTGGGCTGATCCCCGATTTAGGCATATGGAGTTCATT
586 AGCAGGATCGACAGCACGCAGAGAGGGACCAGGCTGATCCCCGAGTTAGACATATGGAGTTCATT
*
15386452 CCATGTCTA-GCATACAGAGTTCATTCCCAGTCTAAGATC-GAACTGGATCGAGGGTTGCAGTAG
651 CCATGTCTATGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCAGTAG
*
15386515 CAGGACCAGTAGCAGGATTGACAGCACACAGGGGGGGACCGAGCCGATCCTCGACTTGTAGATTT
715 CAGGACCAGTAGCAGGATTAACAGCACACA-GGGGGGACCGAGCCGATCCTCGACTTGTAGATTT
15386580 TGCCTCTCCGATTGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTTGCTTAGGCATACGGAGTTC
779 TGCCTCTCCGATTGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTTGCTTAGGCATACGGAGTTC
*
15386645 ATTCCATGTCTAAGCCCCAACCGGACCATGGGTTGTGCTAGTAGGACCGACAGCGGCATCGATAG
844 ATTCCATGTCTAAGCCCCAACCGGACCATGGGTTGTGCTAGTAGGACCGACAGCGGCATCGACAG
15386710 CATGCAGAGGGGGATCAGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGTTGAGCACC
909 CATGCAGAGGGGGATCAGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGTTGAGCACC
* *
15386775 CGTGCACTT
974 CGTACACTC
* *
15386784 GTTTCATGGGTTGACTTAGGCATACGGGGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
** * * * *
15386849 GTCTAAGATTGGACCGAACTGAAGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGGACTGGG
66 GTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATAGCACGCA-GGGGGGACCGGG
** *
15386914 TCGATCCCCGGCTTGCCCATTCT
130 TCGATCCCCAACTTGCGCATTCT
15386937 AAGATGTGAG
Statistics
Matches: 1080, Mismatches: 51, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
980 1 0.00
981 79 0.07
982 969 0.90
983 31 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (982 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGT
CGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTTGTTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTGCGG
GACCGGCAGCAAGTAGAGGGGGATCAGGTCGATCCTTGACTTGCGCATTACGCCTCTCTGGCGGG
CTTAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGCTCATTCTCAGTCTACAA
TCAGATCGGACTGAGGGTTGCAGTAGCAGGATAGACAGCATGTAGGAGGGGACCGGGCTAATCCC
TGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACCATCGTTGCATGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCAAGGGTTGTGGCAGCAGGACCGAC
AGCAGGATCGACAGCACGCAGAGAGGGACCAGGCTGATCCCCGAGTTAGACATATGGAGTTCATT
CCATGTCTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGC
AGGACCAGTAGCAGGATTAACAGCACACAGGGGGGACCGAGCCGATCCTCGACTTGTAGATTTTG
CCTCTCCGATTGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTTGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAACCGGACCATGGGTTGTGCTAGTAGGACCGACAGCGGCATCGACAGCA
TGCAGAGGGGGATCAGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGTTGAGCACCCG
TACACTC
Found at i:15386833 original size:26 final size:26
Alignment explanation
Indices: 15386803--15386855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15386793 GTTGACTTAG
*
15386803 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15386829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15386855 G
1 G
15386856 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15390682 original size:158 final size:156
Alignment explanation
Indices: 15390134--15390697 Score: 522
Period size: 159 Copynumber: 3.6 Consensus size: 156
15390124 CGATCCTCGA
* * * ** * *
15390134 CTTGCGCATCCTGCCTCTCTGGTC-GGTGAGCGTCCGCACGCTCGTTTCGTGGGTTAACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* ** * *
15390198 ATACGGAGTTCATTCCCAATCTAAGATTGGACC-AGACCGAGGGTTGCGGCAACAGGATCGACAG
65 ATACGGAGTTCATT-CCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATCGACAG
* * *
15390262 CACACAGGGGGGACCGGGCCAATCCCCGA
128 CACGCAGGGGGGACCGGGCCAATCCCTGG
* * ** * * * *
15390291 CTGGCGCATTCTGCCTCTCCGGTCGGCTGAGCGTCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * * * * * * * **
15390356 ATAGGGAGTTCTTTCCATGTCTAAGCCTCAG-TCGGACTGAGGGTTATGGCAGCGGGACCGGTAG
65 ATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * ***
15390420 CATGCAGAGGTGGACTGGGCTGGTCCCTGG
128 CACGCAG-GGGGGACCGGGCCAATCCCTGG
* * *** *
15390450 CTTGCGCATTATGCCTCTCTGATTGACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCAG-CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
15390515 ATACAGAGTTCATTCTTAGTCTAAGATCAGACCGAACCAAGGGTTGTGGTAGCAGGATCGACAGC
65 ATACGGAGTTCATTC-CAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGC
*
15390580 ACGCAAGGGGGGACCGAGCCAATCCCTGG
129 ACGC-AGGGGGGACCGGGCCAATCCCTGG
* * *
15390609 CTTGCACATTCTGCCTCTCCGGCAGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCA
1 CTTGCGCATTCTGCCTCTCCGGCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
15390674 TACGGAGTTCATTCCATGTCTAAG
66 TACGGAGTTCATTCCA-GTCTAAG
15390698 CATACGGAGT
Statistics
Matches: 318, Mismatches: 79, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 25 0.08
158 142 0.45
159 148 0.47
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (156 bp):
CTTGCGCATTCTGCCTCTCCGGCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
TACGGAGTTCATTCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
GCAGGGGGGACCGGGCCAATCCCTGG
Found at i:15391082 original size:26 final size:26
Alignment explanation
Indices: 15391050--15391102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15391040 GTTGACGTAG
15391050 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
15391076 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15391102 G
1 G
15391103 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15391745 original size:26 final size:26
Alignment explanation
Indices: 15391716--15391768 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15391706 GTTGGCATAG
15391716 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
15391742 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15391768 G
1 G
15391769 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15392489 original size:26 final size:26
Alignment explanation
Indices: 15392437--15392489 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
15392427 GTTGACTTAG
* * * *
15392437 GCATACGGTGTTTATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15392463 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15392489 G
1 G
15392490 ATCACACCGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15392951 original size:26 final size:26
Alignment explanation
Indices: 15392921--15392973 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15392911 GTTAGCTTAG
*
15392921 GCATACGAATTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15392947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15392973 G
1 G
15392974 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15393232 original size:170 final size:170
Alignment explanation
Indices: 15392988--15393302 Score: 400
Period size: 170 Copynumber: 1.9 Consensus size: 170
15392978 GATCGGACCG
* * *
15392988 AGGGTTGTGGCAGCAGGACCAGCAGCAGGATCAGCATCATACAGAGGGGGACTGAGATGATCCCC
1 AGGGTTGTGGCAGCAGGACCAGCAGCAGGATCAGCAGCACACAGAGGGGGACCGAGATGATCCCC
* * * * * * * *
15393053 GGCTTGCGCATTCTGCCTTTCCGACCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAG
66 GACTTGCGCATTATGCCTCTCCGACCGACTGAGCACACACACGCTCGTTTCATGGGTTGACTGAG
* *
15393118 GTATACGGAGTTCATTCCATGTCCAAGCCCCAGTCGATGA
131 GCATACGGAATTCATTCCATGTCCAAGCCCCAGTCGATGA
* * * * *
15393158 AGGGTTGTGGCAGTAGGACC-GACAGC-GAGATCGGCAGCACGCAGAGGGGGACCGGGTTGATCC
1 AGGGTTGTGGCAGCAGGACCAG-CAGCAG-GATCAGCAGCACACAGAGGGGGACCGAGATGATCC
* ** *
15393221 TCGACTTGCGCATTATGCCTCTCCGGTCGACTGAGCACACGCACGCTCGTTTCATGGGTTGACTG
64 CCGACTTGCGCATTATGCCTCTCCGACCGACTGAGCACACACACGCTCGTTTCATGGGTTGACTG
15393286 AGGCATACGGAATTCAT
129 AGGCATACGGAATTCAT
15393303 CCCCCATCTA
Statistics
Matches: 121, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
169 2 0.02
170 119 0.98
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (170 bp):
AGGGTTGTGGCAGCAGGACCAGCAGCAGGATCAGCAGCACACAGAGGGGGACCGAGATGATCCCC
GACTTGCGCATTATGCCTCTCCGACCGACTGAGCACACACACGCTCGTTTCATGGGTTGACTGAG
GCATACGGAATTCATTCCATGTCCAAGCCCCAGTCGATGA
Found at i:15393991 original size:301 final size:302
Alignment explanation
Indices: 15393449--15394045 Score: 711
Period size: 301 Copynumber: 2.0 Consensus size: 302
15393439 GCGCCTGCAC
*
15393449 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* *** * *
15393514 GGGTTATGGCAGCAGGACCGGCAGCAGGTAGAGGGGGATCAGGCTGATCCTCGGCTTAAGCATTA
66 GGGTTATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCTCGGCTTAAGCATTA
**
15393579 TGCCTCTCTGGCAGGCTCAATGCCAGCACACTCATTTTATGCGTTGACTTAGGCATACGGAGTTC
131 TGCCTCTCTGGCAGGCTCAATGCCAGCACACTCATTTTATGCGTTGACTTACACATACGGAGTTC
* * * ** * * * * * *
15393644 ATTCCCAGTCTAAGATCGGATTGGATCGAAGGTTGCGGTAGCAGGATCGATAGCACGC-AGGGGG
196 ATTCCCAGCCTAAGAACAGACCGAACCCAAGGATGCGGCAGCAGGATCGACAGCACGCAAGGGGG
* * * * *
15393708 GATCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGAT
261 GACCGAGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGAT
* * * *
15393750 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCGA
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* * ** *
15393815 GGGTTATGGTAGCGGGACCGACAGCACACAGAGGGGGACC-GAGCCGATCC-CTGGCTTGCGTAT
66 GGGTTATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAG-GCCGATCCTC-GGCTTAAGCAT
* * * * * *
15393878 TATGCCT-TTTCGGTCA-GCTCAGTGCTC-GCACGCTCGTTTTGTGGGTTGACTTACACATACGG
129 TATGCCTCTCT-GG-CAGGCTCAATGC-CAGCACACTCATTTTATGCGTTGACTTACACATACGG
** *
15393940 AGTTCATTCTGAGCCTAAGAACAGACCGAACCCAGGGATGCGGCAGCAGGATCGACAGCACGCAA
191 AGTTCATTCCCAGCCTAAGAACAGACCGAACCCAAGGATGCGGCAGCAGGATCGACAGCACGCAA
*
15394005 GGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTACCTCT
256 GGGGGGACCGAGTCGATCCCCAGCTTACGCATTCTACCTCT
15394046 TTAGCCGGCT
Statistics
Matches: 246, Mismatches: 44, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
300 4 0.02
301 203 0.83
302 39 0.16
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (302 bp):
GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
GGGTTATGGCAGCAGGACCGACAGCACACAGAGGGGGACCAGGCCGATCCTCGGCTTAAGCATTA
TGCCTCTCTGGCAGGCTCAATGCCAGCACACTCATTTTATGCGTTGACTTACACATACGGAGTTC
ATTCCCAGCCTAAGAACAGACCGAACCCAAGGATGCGGCAGCAGGATCGACAGCACGCAAGGGGG
GACCGAGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGAT
Found at i:15394130 original size:26 final size:26
Alignment explanation
Indices: 15394091--15394143 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15394081 GTTGGCTTAG
* *
15394091 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACAGAATTCAATCCCA-GTCTAA
*
15394117 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCAATCCCAGTCTAA
15394143 G
1 G
15394144 ATCGGTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCAATCCCAGTCTAA
Found at i:15394482 original size:26 final size:26
Alignment explanation
Indices: 15394446--15394496 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15394436 GTTGACCTAG
15394446 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15394472 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAATCTA
15394497 GGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15395103 original size:316 final size:316
Alignment explanation
Indices: 15394528--15395115 Score: 739
Period size: 316 Copynumber: 1.9 Consensus size: 316
15394518 AGGGTTGTGG
* * * * * *
15394528 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTGCGCATTTTGCCTCTCCG
1 CAGCAGGATCGACACCACGCAGGGGGGACCAGGCCGATCCCCAACTTGAGCATTCTACCTCTCCG
* **** * *
15394593 GTCGGCTGAGCGGCCGTTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTC
66 GTCGGCTGAGCGCCCAAAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * ** * ** *
15394658 TAAGCCCCAGCCGGACCGAGTGTTGTGGCAATGGGACCGGCAGCCCGCAAAGGGGGACCGAGCCG
131 TAAGCCCCAGCCAGACCGAGGGTCATGGCAACGGGACCACCAGCACGCAAAGGGGGACCGAGCCG
* * *
15394723 ATCCCCAGCTTGCGCATTATGCCTCTTCGATCGACTCAACACCCGCACACTCGTTTCTTGGGTTG
196 ATCCCCAGCTTGCACATTATGCCTCTTCGATAGACTCAACACCCGCACACTCGTTTCGTGGGTTG
*
15394788 ACTTATGCATACGAAGTTTATTCCCAGTCTAAGATCAGATCGAATGAGGGTTGCTA
261 ACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGATCGAATGAGGGTTGCTA
* * *
15394844 CAGCAGGATCGACACCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGAGCATTCTACCTCTTCG
1 CAGCAGGATCGACACCACGCAGGGGGGACCAGGCCGATCCCCAACTTGAGCATTCTACCTCTCCG
* * *
15394909 TTCGGCTGAGCGCCCAAAAGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 GTCGGCTGAGCGCCCAAAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * * * *
15394974 TAAGCCCCAGCCAGACCGAGGGTCATGGCAGCGGGACCACCCGCAGGTAGAGGGGGATCGGGTCC
131 TAAGCCCCAGCCAGACCGAGGGTCATGGCAACGGGACCACCAGCACGCAAAGGGGGACCGAG-CC
*** * * * *
15395039 -ATCCTTGGCTTGCACATTATGCCTCTCTGGCTAG-CTCAACGCCCGCACACTTGTTTCGTGGGT
195 GATCCCCAGCTTGCACATTATGCCTCT-TCGATAGACTCAACACCCGCACACTCGTTTCGTGGGT
15395102 TGACTTAGGCATAC
259 TGACTTAGGCATAC
15395116 AGAGTACATT
Statistics
Matches: 225, Mismatches: 45, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
316 219 0.97
317 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (316 bp):
CAGCAGGATCGACACCACGCAGGGGGGACCAGGCCGATCCCCAACTTGAGCATTCTACCTCTCCG
GTCGGCTGAGCGCCCAAAAGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGCCAGACCGAGGGTCATGGCAACGGGACCACCAGCACGCAAAGGGGGACCGAGCCG
ATCCCCAGCTTGCACATTATGCCTCTTCGATAGACTCAACACCCGCACACTCGTTTCGTGGGTTG
ACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGATCGAATGAGGGTTGCTA
Found at i:15395146 original size:26 final size:26
Alignment explanation
Indices: 15395110--15395162 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15395100 GTTGACTTAG
* *
15395110 GCATACAGAGTACATTCTCAGTCTAA
1 GCATACAGAGTACATTCCCAATCTAA
* *
15395136 GCATACGGAGTGCATTCCCAATCTAA
1 GCATACAGAGTACATTCCCAATCTAA
15395162 G
1 G
15395163 ATCCGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTACATTCCCAATCTAA
Found at i:15395446 original size:659 final size:661
Alignment explanation
Indices: 15394180--15395638 Score: 1697
Period size: 659 Copynumber: 2.2 Consensus size: 661
15394170 GCAGGACAAG
* * *
15394180 CAGCAGGATCTACAGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTACGCATTCTACCTCTTCG
1 CAGCAGGATCGACAACACGCAGGGGGGATCGGGCCAATCCCCGGCTTACGCATTCTACCTCTTCG
* * * * *
15394245 ACGAGCTGGGCGCCTGCATGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 ACG-GCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * *
15394310 TAAGCCCCAGCAGGACTAAGGGTTATGGCAGCGGGACCGACAGCACGCAGCGGGGGACTGGGCTA
130 TAAGCCCCAGCAGGACCAAGGGTCATGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCTA
* * * ** ** *
15394375 ATCCCCGGCTTGTGCACTTTGTCTCTTAGGTCGACTGAGTGCCCACATGCTCATTTTGTGGGTTG
195 ATCCCCGGCTTGTGCACTTTGCCTCTTAGGTAGACTCAACGCCCACACACTCATTTCGTGGGTTG
* * * * * *
15394440 ACCTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGA
260 ACCTAGGCATACAGAGTACATCCCCAATCTAAGCATACGGAGTGCATTCCCAATCTAAGATCCGA
** * * *
15394505 TCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCC
325 TC-GA-CGAACCGAGGGTTACGACAGCAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCCC
* * * * * * ** *
15394570 AACTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCGGCCGTTCGCCCGTTTCATGGGTTGGCTTAG
388 AACTTACGCATTCTACCTCTCCGATCAGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * *
15394635 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCGGACCGAGTGTTGTGGCAATGGGACCGGCA
453 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAACGGGACCGGCA
*
15394700 GCCCGCAAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGATCGACTCAACAC
518 GCACGCAAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGA-CGACTCAACAC
* * * *
15394765 CCGCACACTCGTTTCTTGGGTTGACTTATGCATACGAAGTTTATTCCCAGTCTAAGATCAGATC-
582 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCA
** *
15394829 GAATGAGGGTTGCTA
647 GAACAAGGGTTGCGA
* * * *
15394844 CAGCAGGATCGACACCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGA-GCATTCTACCTCTTC
1 CAGCAGGATCGACAACACGCAGGGGGGATCGGGCCAATCCCCGGCTT-ACGCATTCTACCTCTTC
* ** *
15394908 GTTCGGCTGAGCGCCCAAAAGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 G-ACGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * *
15394973 CTAAGCCCCAGCCA-GACCGAGGGTCATGGCAGCGGGACC-ACCCGCAGGTAGAGGGGGA-TCGG
129 CTAAGCCCCAG-CAGGACCAAGGGTCATGGCAGCGGGACCGA-CAGCACGCAGAGGGGGACT-GG
* ** * **
15395035 G-TCCATCCTTGGC-T-TGCACATTATGCCTCTCT-GGCTAG-CTCAACGCCCGCACACTTGTTT
191 GCT-AATCCCCGGCTTGTGCAC-TT-TGCCTCT-TAGG-TAGACTCAACGCCCACACACTCATTT
* * * *
15395095 CGTGGGTTGACTTAGGCATACAGAGTACATTCTCAGTCTAAGCATACGGAGTGCATTCCCAATCT
251 CGTGGGTTGACCTAGGCATACAGAGTACATCCCCAATCTAAGCATACGGAGTGCATTCCCAATCT
** *
15395160 AAGATCCGATC-A-G-ACCGAGGGTTACGACAGCAGGATCGACAATGCGCAGGGGGGACTGGGCC
316 AAGATCCGATCGACGAACCGAGGGTTACGACAGCAGGATCGACAACACGCAGGGGGGACCGGGCC
* *
15395222 GATCCCCGACTTACGCATTCTACCTCTCCGATCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTT
381 GATCCCCAACTTACGCATTCTACCTCTCCGATCAGCTGAGCGCCCGCACGCCCATTTCATGGGTT
*
15395287 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCGGG
446 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAACGGG
* * * * * * * * *
15395352 ACTGGTAGCAGGTAGAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTC-TCTGGCAGG
511 ACCGGCAGCACGCAAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTC-GAC-GA
* * *
15395416 CTCAACGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
574 CTCAACACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
* * *
15395481 TCGGACCAGACCAAGGGTTGCGG
639 TCAGACCAGAACAAGGGTTGCGA
* * * * * * *
15395504 TAGCAGGATTGACAACACGCAGGGGTGA-CTGGGTCAATCCCCGGCTTACGCATTCTGCCTATCC
1 CAGCAGGATCGACAACACGCAGGGGGGATC-GGGCCAATCCCCGGCTTACGCATTCTACCTCTTC
* * * **
15395568 GGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
65 -GACGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
15395633 CTAAGC
129 CTAAGC
15395639 ATACGGAGTT
Statistics
Matches: 667, Mismatches: 112, Indels: 36
0.82 0.14 0.04
Matches are distributed among these distances:
658 3 0.00
659 270 0.40
660 121 0.18
661 1 0.00
662 6 0.01
663 6 0.01
664 252 0.38
665 8 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (661 bp):
CAGCAGGATCGACAACACGCAGGGGGGATCGGGCCAATCCCCGGCTTACGCATTCTACCTCTTCG
ACGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCAGGACCAAGGGTCATGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCTAA
TCCCCGGCTTGTGCACTTTGCCTCTTAGGTAGACTCAACGCCCACACACTCATTTCGTGGGTTGA
CCTAGGCATACAGAGTACATCCCCAATCTAAGCATACGGAGTGCATTCCCAATCTAAGATCCGAT
CGACGAACCGAGGGTTACGACAGCAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCCCAAC
TTACGCATTCTACCTCTCCGATCAGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAACGGGACCGGCAGCA
CGCAAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGACGACTCAACACCCGC
ACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAAC
AAGGGTTGCGA
Found at i:15395477 original size:343 final size:342
Alignment explanation
Indices: 15394807--15395479 Score: 926
Period size: 343 Copynumber: 2.0 Consensus size: 342
15394797 TACGAAGTTT
* * * * *
15394807 ATTCCCAGTCTAAGATCAGATCGAATGAGGGTTGCTACAGCAGGATCGACACCACGCAGGGGGGA
1 ATTCCCAATCTAAGATCAGATCGAACGAGGGTTACGACAGCAGGATCGACAACACGCAGGGGGGA
* * * *
15394872 TCAGGCCGATCCCCAGCTTGAGCATTCTACCTCTTCGTTCGGCTGAGCGCCCAAAAGCTCATTTC
66 TCAGGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGATCAGCTGAGCGCCCAAAAGCCCATTTC
*
15394937 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTCATGG
131 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTCATGG
* ***
15395002 CAGCGGGACCACCCGCAGGTAGAGGGGGATCGGGTCCATCCTTGGCTTGCACATTATGCCTCTCT
196 CAGCGGGACCACCAGCAGGTAGAGGGGGATCGGGTCCATCCCCAGCTTGCACATTATGCCTCTCT
* *
15395067 GGCTAGCTCAACGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCTCAGT
261 GGCTAGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCCAGT
15395132 CTAAGCATACGGAGTGC
326 CTAAGCATACGGAGTGC
* * **
15395149 ATTCCCAATCTAAGATCCGATCAGACCGAGGGTTACGACAGCAGGATCGACAATGCGCAGGGGGG
1 ATTCCCAATCTAAGATCAGATC-GAACGAGGGTTACGACAGCAGGATCGACAACACGCAGGGGGG
* ** *
15395214 A-CTGGGCCGATCCCC-GACTT-ACGCATTCTACCTCTCCGATCAGCTGAGCGCCCGCACGCCCA
65 ATC-AGGCCGATCCCCAG-CTTGA-GCATTCTACCTCTCCGATCAGCTGAGCGCCCAAAAGCCCA
* *
15395276 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTT
127 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTC
* **** *
15395341 GTGGCAGCGGGACTGGTAGCAGGTAGAGGGGGA-CTGGG-CCGATCCCCAGCTTGCGCATTATGC
192 ATGGCAGCGGGACCACCAGCAGGTAGAGGGGGATC-GGGTCC-ATCCCCAGCTTGCACATTATGC
* * *
15395404 CTCTCTGGC-AGGCTCAACGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
255 CTCTCTGGCTA-GCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACAT
15395468 TCCCAGTCTAAG
319 TCCCAGTCTAAG
15395480 ATCGGACCAG
Statistics
Matches: 289, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
342 27 0.09
343 262 0.91
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (342 bp):
ATTCCCAATCTAAGATCAGATCGAACGAGGGTTACGACAGCAGGATCGACAACACGCAGGGGGGA
TCAGGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGATCAGCTGAGCGCCCAAAAGCCCATTTC
GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTCATGG
CAGCGGGACCACCAGCAGGTAGAGGGGGATCGGGTCCATCCCCAGCTTGCACATTATGCCTCTCT
GGCTAGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCCAGT
CTAAGCATACGGAGTGC
Found at i:15395610 original size:158 final size:157
Alignment explanation
Indices: 15395136--15395637 Score: 522
Period size: 158 Copynumber: 3.2 Consensus size: 157
15395126 CTCAGTCTAA
* * * * * *
15395136 GCATACGGAGTGCATTCCCA-ATCTAAGATCCGATCAGACCGAGGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATTGAC
** * * ** *
15395200 AATGCGCAGGGGGGACTGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGATCAGCTGAGCGC
64 AACACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
15395265 CCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * **
15395294 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTGTGGCAGCGGGACTGGTA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGACCGAGGGTTGCGGCAGCAGGATTGACA
* * * * * * * * * *
15395359 GCAGGTAGAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCAGGCTCAACGC
65 ACACGCAG-GGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * *
15395424 CCGTACACTCGTTTCGTGGGTTGACTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15395453 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATTGAC
* * * * *
15395517 AACACGCAGGGGTGACTGGGTCAATCCCCGGCTTACGCATTCTGCCTATCCGGCCGGCTGAGTGC
64 AACACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
15395582 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15395611 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15395638 CATACGGAGT
Statistics
Matches: 270, Mismatches: 68, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
157 6 0.02
158 140 0.52
159 121 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGACCGAGGGTTGCGGCAGCAGGATTGACAA
CACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15396008 original size:26 final size:26
Alignment explanation
Indices: 15395979--15396031 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15395969 GTTAACTTAG
*
15395979 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15396005 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15396031 G
1 G
15396032 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15396521 original size:171 final size:171
Alignment explanation
Indices: 15396224--15396532 Score: 388
Period size: 171 Copynumber: 1.8 Consensus size: 171
15396214 AAGCTGGCTC
* * *
15396224 AGTGCCCACACGCTTCTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
1 AGTGCCCACACGCTTCTTTCGTGGGTTCGCTTAGACATACGGAGTTCATTCCCAGTCTAAGACTC
* * * * * * * * * *
15396289 GATCGGACTGAGGGTTGTGACAGCAGTACCAGTAGTAGGATTGGCAGCACGTAGGGGGGGACCGG
66 AACCAGACCGAGGGTTGTGACAGCAGGACCAGAAGCAGGATCGGCAGCACGCAGAGGGGGACCGG
15396354 GCTGATCCCCAACTTATGTATTCTACCTCTCTGGCCGGTTG
131 GCTGATCCCCAACTTATGTATTCTACCTCTCTGGCCGGTTG
* * * *
15396395 AGTGCCCACACGCTTGTTTCGTGGGTTGGCTTAGACATATGGAGTTCATT-CCATGTCTAAGCCT
1 AGTGCCCACACGCTTCTTTCGTGGGTTCGCTTAGACATACGGAGTTCATTCCCA-GTCTAAGACT
* * * * *
15396459 CAACCAGACCGAGGGTTGTGGCAGTAGGACC-GAAAGCGGGATCGGTAGCATGCAGAGGGGGACC
65 CAACCAGACCGAGGGTTGTGACAGCAGGACCAG-AAGCAGGATCGGCAGCACGCAGAGGGGGACC
15396523 GGGCTGATCC
129 GGGCTGATCC
15396533 TCGGCTTGCG
Statistics
Matches: 114, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
170 4 0.04
171 110 0.96
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (171 bp):
AGTGCCCACACGCTTCTTTCGTGGGTTCGCTTAGACATACGGAGTTCATTCCCAGTCTAAGACTC
AACCAGACCGAGGGTTGTGACAGCAGGACCAGAAGCAGGATCGGCAGCACGCAGAGGGGGACCGG
GCTGATCCCCAACTTATGTATTCTACCTCTCTGGCCGGTTG
Found at i:15396570 original size:13 final size:13
Alignment explanation
Indices: 15396552--15396576 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15396542 GCATTATGCC
15396552 TCTCCGACCGGCA
1 TCTCCGACCGGCA
15396565 TCTCCGACCGGC
1 TCTCCGACCGGC
15396577 TGAGCGCCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.24, T:0.16
Consensus pattern (13 bp):
TCTCCGACCGGCA
Found at i:15397124 original size:158 final size:156
Alignment explanation
Indices: 15396639--15397140 Score: 508
Period size: 159 Copynumber: 3.2 Consensus size: 156
15396629 CCTAATGTAA
* * * *
15396639 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
15396704 TCACGCA--GGGGACCAGGTCGATCCCCGGTTTACGCATTATGCCTCCCCTGTCGACTGAGTGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCT-CTCTGTCGACTGAGCGCC
** *
15396767 TGCACGCTTATTTCATGGGTTGGCTTAG
130 -GCACGCTCGTTTCATGGGTTGACTTAG
** * * * * *
15396795 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGGT
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * * *
15396859 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGTATTATGGCTTTTCAGTCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTACGCATTAT-GCCTCTCTGTCGACTGAGCG
** * *
15396924 CCCGCACGCTCGTTTTGTTGGTTGACTTAT
128 -CCGCACGCTCGTTTCATGGGTTGACTTAG
** * * * *
15396954 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGACACCAAGATCGATG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * *
15397019 GCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGGATTCTGCCTCTCTGGCCTACTGAGCGCT
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCT-GTCGACTGAGCGC-
* *
15397084 CGCACACTCGTTTCATGGGTTGCCTTAG
129 CGCACGCTCGTTTCATGGGTTGACTTAG
15397112 GCATAC-GTAGTTCATTCCCAGTCTAAGAT
1 GCATACAG-AGTTCATTCCCAGTCTAAGAT
15397141 TTTGAGCCAC
Statistics
Matches: 277, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
155 3 0.01
156 57 0.21
157 7 0.03
158 86 0.31
159 116 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCTGTCGACTGAGCGCCG
CACGCTCGTTTCATGGGTTGACTTAG
Found at i:15398351 original size:26 final size:26
Alignment explanation
Indices: 15398322--15398374 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15398312 GTTGGCTTAG
*
15398322 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15398348 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15398374 G
1 G
15398375 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15398556 original size:26 final size:26
Alignment explanation
Indices: 15398517--15398572 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15398507 TGGGTTGACT
15398517 TAAGCATACAGAGTCCATCCCCAGTC
1 TAAGCATACAGAGTCCATCCCCAGTC
* * *
15398543 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTCCATCCCCAGTC
15398569 TAAG
1 TAAG
15398573 ATCGGAACAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACAGAGTCCATCCCCAGTC
Done.