Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 123 of 402
Found at i:15398933 original size:26 final size:26
Alignment explanation
Indices: 15398888--15398937 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15398878 GTTAACTTAG
15398888 GCATACGGAGCTTATCCCCAGTCTAA
1 GCATACGGAGCTTATCCCCAGTCTAA
*
15398914 GCATACGGAG-TTCATTCCCAGTCT
1 GCATACGGAGCTT-ATCCCCAGTCT
15398938 GAGCGCCCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTTATCCCCAGTCTAA
Found at i:15399320 original size:26 final size:26
Alignment explanation
Indices: 15399290--15399368 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15399280 GTTAGCTTAG
15399290 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15399316 GCATACGGAGTTCATTCCATGTCTGA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15399342 GCATACGGAGTTCAATCCCA-GTCTAA
1 GCATACGGAGTTC-ATTCCATGTCTAA
15399368 G
1 G
15399369 AGTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 44 0.90
27 5 0.10
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15400563 original size:26 final size:25
Alignment explanation
Indices: 15400527--15400581 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 25
15400517 TGGGTTGGCT
15400527 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCA-GTC
*
15400553 TAAGCGTACGGAGTTCATTCCAGTC
1 TAAGCATACGGAGTTCATTCCAGTC
15400578 TAAG
1 TAAG
15400582 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
TAAGCATACGGAGTTCATTCCAGTC
Found at i:15400706 original size:184 final size:184
Alignment explanation
Indices: 15400375--15400741 Score: 472
Period size: 184 Copynumber: 2.0 Consensus size: 184
15400365 TCATAGGGCA
*
15400375 TACGGAGTTCATTCCTAGTTCAAGATCGGATCAGACCGAAGGTTGCGACAGCAGGATCGATAGCA
1 TACGGAGTTCATTCCTAGTTCAAGATCGGATCAGACCGAAGGTTGCGACAGCAGGATCGACAGCA
* * *** * * *
15400440 CGTAGGGGGGACTGGGCCGATCCTCGGCTTGTGCATTCTACCTCTCCGACCAGCTGAGCGCCGGC
66 CGCAGGGGGGACTGGGCCGATCCTCGACTTCCACAATCTACCTCTCCGACCAGCTGAGCACCCGC
* * *
15400505 ACGTTCATTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCG
131 ACGCTCATTTCGTGGGTTAGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCG
* * * *
15400559 TACGGAGTTCATTCC-AG-TCTAAGATCGGATCGGATCGAGGGTTGCCG-CAGCAGGATCGGCAG
1 TACGGAGTTCATTCCTAGTTC-AAGATCGGATCAGACCGAAGGTTG-CGACAGCAGGATCGACAG
* * * * *
15400621 CATGCAGGGGGGGA-TAGGGTCGATCCTCGACTTCCACAATCTACCTCTCCGATCGGTTGAGCAC
64 CACGCA-GGGGGGACT-GGGCCGATCCTCGACTTCCACAATCTACCTCTCCGACCAGCTGAGCAC
*
15400685 CCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 CCGCACGCTCATTTCGTGGGTTAGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
15400742 CCCAGCCAGA
Statistics
Matches: 157, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
182 2 0.01
183 41 0.26
184 114 0.73
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
TACGGAGTTCATTCCTAGTTCAAGATCGGATCAGACCGAAGGTTGCGACAGCAGGATCGACAGCA
CGCAGGGGGGACTGGGCCGATCCTCGACTTCCACAATCTACCTCTCCGACCAGCTGAGCACCCGC
ACGCTCATTTCGTGGGTTAGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCG
Found at i:15400851 original size:13 final size:13
Alignment explanation
Indices: 15400833--15400861 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15400823 TTGCGCATTA
15400833 GGCCTCTCCGACC
1 GGCCTCTCCGACC
15400846 GGCCTCTCCGACC
1 GGCCTCTCCGACC
15400859 GGC
1 GGC
15400862 TGAGCACCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.52, G:0.28, T:0.14
Consensus pattern (13 bp):
GGCCTCTCCGACC
Found at i:15401215 original size:159 final size:158
Alignment explanation
Indices: 15400995--15401743 Score: 639
Period size: 159 Copynumber: 4.7 Consensus size: 158
15400985 GACAGCATGC
* * * * * * *
15400995 AGGGGGACTGAGCTGATCCCCGGCTTGTGCATTCTGCCTC-TCTGGTTGACTGAGCATCCGCACG
1 AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGTCGGCTCAGCACCCGCACG
* * * *
15401059 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCTAG-CCGGACCAA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTC-AGACCAGACCAA
* *
15401123 GGGTTGTGGCAGCGGGACTTGCAGCACGTAG
129 GGGTTGTGGCAGCAGGA-TGGCAGCACGTAG
* * * **
15401154 AGGGGGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTTCTATCGGCTCAGCACCCGCACGC
1 AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCACCCGCACGC
* * ** **
15401219 TCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAATATCAGACTGGACCAAG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCTCAGACCAGACCAAG
* * *
15401283 GGTTGTGGTAGCAGGATTGACAGCACGTTG
130 GGTTGTGGCAGCAGGA-TGGCAGCACGTAG
* * * * ** * * * * * *
15401313 GGGGGGATCGTG-TCGATCCCCGGCTTACATATTCTGCCTCTCCGGCCGGTTGAGCACCTGCATG
1 AGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCACCCGCACG
* * * * * * *
15401377 CCCGTTTCATGGGTTGGCTTAGGCATAGGGCA-TTGATTCCATGTCTAAGCCCCAG-CCAGTCCG
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAG-CTCAGACCAGACCA
* * * *
15401440 AGGGCTGTGCCAGCAAGACTGGCAGCACGTTG
128 AGGGTTGTGGCAGCAGGA-TGGCAGCACGTAG
* * * * * * ** *
15401472 AAGGGGACCGGGCTAATCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGTACGC
1 AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCACCCGCACGC
* * * * * * *
15401537 TCGTTTCGTGGGTTGACTTATGCGTACAGAGTTCATTCC-TAGTCTAAGATCAGACCAGATCGAG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCTCAGACCAGACCAAG
** *
15401601 GGTTGCAGCAGCAGGATGGCAACACGTAG
130 GGTTGTGGCAGCAGGATGGCAGCACGTAG
* * * * * * * *
15401630 AGGGGGACCAGACTGATCCCCGGCTTGCACATTCTACCTCTCCGATCGGCTAAGCACCCACACGC
1 AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCACCCGCACGC
** *
15401695 TCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATTTCTAAGC
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15401744 ATACGGAGTT
Statistics
Matches: 458, Mismatches: 120, Indels: 25
0.76 0.20 0.04
Matches are distributed among these distances:
158 109 0.24
159 341 0.74
160 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCAGACCAGACCAAGG
GTTGTGGCAGCAGGATGGCAGCACGTAG
Found at i:15401501 original size:318 final size:316
Alignment explanation
Indices: 15401044--15401743 Score: 837
Period size: 318 Copynumber: 2.2 Consensus size: 316
15401034 CTCTGGTTGA
15401044 CTGAGCATCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCA-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * * ** * * * * *
15401109 TCTAGCCGGACCAAGGGTTGTGGCAGCGGGACTTGCAGCACGTAGAGGGGGATCGGGTTGATCCC
65 CCCAGCCAGACCAAGGGCTGTGCCAGCAAGACTGGCAGCACGTAGAAGGGGACCGGGCTAATCCC
* * *
15401174 CGGCTTGCGCATTATGCCTCTTCTATCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
130 CGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
* * ** ** *
15401239 TGCATACGGAGTTCATTCCTAGTCTAATATCAGACTGGACCAAGGGTTGTGGTAGCAGGATTGAC
195 TGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGA-TGAC
* * * * ** * * *
15401304 AGCACGTTGGGGGGGATC-GTGTCGATCCCCGGCTTACATATTCTGCCTCTCCGGCCGG
259 AACACGTAGAGGGGGACCAGACT-GATCCCCGGCTTACACATTCTACCTCTCCGACCGG
* * *
15401362 TTGAGCACCTGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGCA-TTGATTCCATGTCTAAG
1 CTGAGCACC-GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG-AGTTCATTCCATGTCTAAG
* * *
15401426 CCCCAGCCAGTCCGAGGGCTGTGCCAGCAAGACTGGCAGCACGTTGAAGGGGACCGGGCTAATCC
64 CCCCAGCCAGACCAAGGGCTGTGCCAGCAAGACTGGCAGCACGTAGAAGGGGACCGGGCTAATCC
* * ** *
15401491 CTGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTT
129 CCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
15401556 ATGCGTACAGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATGGC
194 ATGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATGAC
* *
15401621 AACACGTAGAGGGGGACCAGACTGATCCCCGGCTTGCACATTCTACCTCTCCGATCGG
259 AACACGTAGAGGGGGACCAGACTGATCCCCGGCTTACACATTCTACCTCTCCGACCGG
* * * * ** *
15401679 CTAAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATTTCTAAGC
1 CTGAGCA-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15401744 ATACGGAGTT
Statistics
Matches: 319, Mismatches: 58, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
316 1 0.00
317 99 0.31
318 218 0.68
319 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (316 bp):
CTGAGCACCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCAGACCAAGGGCTGTGCCAGCAAGACTGGCAGCACGTAGAAGGGGACCGGGCTAATCCCC
GACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATGACAA
CACGTAGAGGGGGACCAGACTGATCCCCGGCTTACACATTCTACCTCTCCGACCGG
Found at i:15403347 original size:26 final size:26
Alignment explanation
Indices: 15403318--15403370 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15403308 GTTGGCTTAG
15403318 GCATACTG-AGTTCAAT-CCATGTCTAA
1 GCATAC-GAAGTTCAATCCCA-GTCTAA
*
15403344 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
15403370 G
1 G
15403371 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:15403738 original size:26 final size:26
Alignment explanation
Indices: 15403702--15403776 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
15403692 ACTTAGGCAT
15403702 ACGGAGTTCATCCCCAGTCTAAGCAG
1 ACGGAGTTCATCCCCAGTCTAAGCAG
15403728 ACGGAGTTCATCCCCAGTCTAAGCAG
1 ACGGAGTTCATCCCCAGTCTAAGCAG
*
15403754 ACGGAGTTCATTCCCAGTCTAAG
1 ACGGAGTTCATCCCCAGTCTAAG
15403777 ATCAGATCGG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (26 bp):
ACGGAGTTCATCCCCAGTCTAAGCAG
Found at i:15404363 original size:11 final size:11
Alignment explanation
Indices: 15404347--15404372 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15404337 CCCGGGGCAC
15404347 CATCGTCGGAG
1 CATCGTCGGAG
15404358 CATCGTCGGAG
1 CATCGTCGGAG
15404369 CATC
1 CATC
15404373 ACCTAGAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15405477 original size:26 final size:26
Alignment explanation
Indices: 15405447--15405499 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15405437 GTTGGCTTAG
* *
15405447 GCATACGGAGTTCATACCATGTCTAA
1 GCATACGAAGTTCATACCAAGTCTAA
*
15405473 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATACCAAGTCTAA
15405499 G
1 G
15405500 AATGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCAAGTCTAA
Found at i:15405687 original size:26 final size:26
Alignment explanation
Indices: 15405657--15405709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15405647 GTTGACTTTG
*
15405657 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15405683 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15405709 G
1 G
15405710 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15408329 original size:26 final size:26
Alignment explanation
Indices: 15408293--15408345 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15408283 GTTGACTTAG
15408293 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
15408319 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15408345 G
1 G
15408346 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15408628 original size:159 final size:159
Alignment explanation
Indices: 15408406--15408822 Score: 421
Period size: 159 Copynumber: 2.6 Consensus size: 159
15408396 GACCGAGCCG
* * * * * * **
15408406 ATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCGGGGCACCCACACGC-CTGTTTCAAGGGTT
1 ATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTC-GTTTCGTGGGTT
* * * * * ** *
15408470 GGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCT-GGACTGAGGGTTATGGCAGCGG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGGACCGAGGGTTACAGCAGCAG
*
15408534 GA-CTGGCAGCACGTAGAGGGGGATCGGGCCA
130 GATC-GACAGCACGTAG-GGGGGATCGGGCCA
* * *
15408565 ATCCTCGGCTTACGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* *** * *
15408630 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATAGGACCGAGGGTTGCAGCAGTAG
66 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATAGGACCGAGGGTTACAGCAGCAG
* * **
15408693 GATCGACAGCAGGTAGGGGGGATTGGGCTG
130 GATCGACAGCACGTAGGGGGGATCGGGCCA
* ** * * * *
15408723 GTCCCCGGCTTACGCATTCTGCCTCTCCGACCAGCTGAGCACTCGCATGCTCATTTCGTGGGTTG
1 ATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
*
15408788 GCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15408823 TACAGAGTTC
Statistics
Matches: 210, Mismatches: 42, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 95 0.45
159 107 0.51
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
ATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGGACCGAGGGTTACAGCAGCAGG
ATCGACAGCACGTAGGGGGGATCGGGCCA
Found at i:15409022 original size:26 final size:26
Alignment explanation
Indices: 15408992--15409044 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15408982 GTTGGCTTAG
15408992 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15409018 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15409044 G
1 G
15409045 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15409031 original size:198 final size:196
Alignment explanation
Indices: 15408691--15409055 Score: 532
Period size: 198 Copynumber: 1.9 Consensus size: 196
15408681 TTGCAGCAGT
* * * *
15408691 AGGATCGACAGCAGGTAGGGGGGATTGGGCTGGTCCCCGGCTTACGCATTCTGCCTCTCCGACCA
1 AGGATCGACAGCAGGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCA
* * * * *
15408756 GCTGAGCACTCGCATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
66 GCTGAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15408821 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACTACAGCAGGACCAGTAG
131 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACTACAGCAGGACCAGTAG
15408886 C
196 C
* * * * * *
15408887 AGGATCGATAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGATCG
1 AGGATCGACAGCAGGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCA
* **
15408952 GTTGAACACCCGCACGCATTTTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 GCTGAACACCCGCACGC--TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
**
15409017 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
129 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGA
15409056 CCGAAGCTTG
Statistics
Matches: 147, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
196 68 0.46
198 79 0.54
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
AGGATCGACAGCAGGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCA
GCTGAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACTACAGCAGGACCAGTAG
C
Found at i:15410708 original size:158 final size:155
Alignment explanation
Indices: 15410209--15410708 Score: 427
Period size: 158 Copynumber: 3.2 Consensus size: 155
15410199 CCCAGTCTAA
* * * *
15410209 GCATATGGAGTTCATTCCCA-GTCTAAGATC-GAATCGGACTGAGGGTTGCGGTAGCAGGGTCCA
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACT-AGA-TGAGGGTTGCGGTAGCAGGATCAA
* * * * * *
15410272 CAGCACGCAGGGGGGATCGGACTGATCCCAGGCTTACGCATTCGACCTTTCCGGCTGGCTGAGCG
63 CAGCACGCAGGAGGGATCGG-CCGATCCC-GACTTACGCATTCTACCTCTCCGACTGGCTGAGCG
* * *
15410337 CCCGCACACCCGTTTCGTGGGTTGGCTTAG
126 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * *
15410367 GCATAGGGAGTTCATTACATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGCGGGA-CTAG
1 GCATATGGAGTTCATTCCATGTCTAAGATC-AGACTAGA-TGAGGGTTGCGGTAGCAGGATC-AA
* * * * * *
15410430 CAGCACGCAGAAGGGGATCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATTGGCTCAAC
63 CAGCACGCAGGA-GGGATC-GGCCGAT-CCCGACTTACGCATTCTACCTCTCCGACTGGCTGAGC
* * * *
15410495 ACCCACACGCTCATTTCGTGGGTTGACGTAG
125 GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15410526 GCATGTAGAGTTCATTCC-TAGTCTAAGATCAGACTAGATAGAGGGTTGCAGTAGCAGGATCAAC
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAGACTAGAT-GAGGGTTGCGGTAGCAGGATCAAC
* * * *
15410590 AGCACGCAGGAGGGATCGGGCC-AGTCCTCGACTTACGCATTCTACCTCTCCAACCGACTGAGTG
64 AGCACGCAGGAGGGATC-GGCCGA-TCC-CGACTTACGCATTCTACCTCTCCGACTGGCTGAGCG
* *
15410654 CCCAAACGCTCGTTTCATGGGTTGGCTTAG
126 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
*
15410684 GCATACGGAGTTCATTCCATGTCTA
1 GCATATGGAGTTCATTCCATGTCTA
15410709 GGCATACGAA
Statistics
Matches: 262, Mismatches: 66, Indels: 28
0.74 0.19 0.08
Matches are distributed among these distances:
157 6 0.02
158 136 0.52
159 113 0.43
160 7 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACTAGATGAGGGTTGCGGTAGCAGGATCAACAG
CACGCAGGAGGGATCGGCCGATCCCGACTTACGCATTCTACCTCTCCGACTGGCTGAGCGCCCAC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15411081 original size:26 final size:26
Alignment explanation
Indices: 15411052--15411102 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411042 GTTGATTTAG
*
15411052 GCATACGGAGGTCATCCCCAGTCTAT
1 GCATACAGAGGTCATCCCCAGTCTAT
* *
15411078 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGGTCATCCCCAGTCTA
15411103 AGATCGAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAT
Found at i:15412150 original size:26 final size:26
Alignment explanation
Indices: 15412114--15412166 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15412104 GTTGACTTAG
15412114 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15412140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15412166 G
1 G
15412167 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15412538 original size:26 final size:26
Alignment explanation
Indices: 15412508--15412560 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15412498 GTTGACTTAG
15412508 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
15412534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15412560 G
1 G
15412561 ATTTAAGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15412901 original size:26 final size:26
Alignment explanation
Indices: 15412851--15412903 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15412841 GTTGTCTTAG
* *
15412851 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
15412877 GCATACAGAGTTCATTCTCA-ATCTAA
1 GCATACAGAGTTCATTC-CATATCTAA
15412903 G
1 G
15412904 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15414446 original size:11 final size:12
Alignment explanation
Indices: 15414419--15414447 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
15414409 AAATGGGGAC
15414419 AAAAATCTTTCT
1 AAAAATCTTTCT
15414431 AAAAATCTTTCT
1 AAAAATCTTTCT
15414443 AAAAA
1 AAAAA
15414448 AATTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (12 bp):
AAAAATCTTTCT
Found at i:15414733 original size:26 final size:26
Alignment explanation
Indices: 15414703--15414753 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15414693 TTGACTTAGG
*
15414703 CATACAGAGTTCATCCCCAGTCTAAC
1 CATACAAAGTTCATCCCCAGTCTAAC
**
15414729 CATACAAAGTTCATTGCCAGTCTAA
1 CATACAAAGTTCATCCCCAGTCTAA
15414754 GATCGGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAAAGTTCATCCCCAGTCTAAC
Found at i:15414953 original size:184 final size:184
Alignment explanation
Indices: 15414666--15415097 Score: 506
Period size: 184 Copynumber: 2.3 Consensus size: 184
15414656 TCTGGTCGGT
* * * ** * *
15414666 TGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAACC
1 TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
* * * * ** * *
15414730 ATACAAAGTTCATTGCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGTAGGATCAGTAGC
65 ATACAAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCAGCAGC
* ** * *
15414795 ACACAGGGGGGATCAGGCTGATCCCCGACTTACGCATTCTACCTATTCGGTCGAC
130 ACACAGGGGGGACCAGGCCAATCCCCGACTTACACATTCTACCTATTCGATCGAC
*
15414850 TGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
** * * *
15414915 TACGGATTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTTGCGGCAACAAGATCGGCAGCA
66 TACAAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCAGCAGCA
* * * * * * * * *
15414980 CGCAGGGGTGACCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTTCGATCGAT
131 CACAGGGGGGACCAGGCCAATCCCCGACTTACACATTCTACCTATTCGATCGAC
* * *
15415034 TGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGC
1 TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15415098 CCCAGTCGGA
Statistics
Matches: 208, Mismatches: 39, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
183 3 0.01
184 205 0.99
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
TGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
TACAAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCAGCAGCA
CACAGGGGGGACCAGGCCAATCCCCGACTTACACATTCTACCTATTCGATCGAC
Found at i:15416169 original size:159 final size:156
Alignment explanation
Indices: 15415892--15416423 Score: 484
Period size: 159 Copynumber: 3.4 Consensus size: 156
15415882 GTTGCGATCT
* * * *
15415892 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTACTCGG
1 CGCACGCTCATTT-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCTAC-CGG
* * * * * *
15415957 ATCGAGGGTTATGGTAGCGGGATC-GAAAAGCACGCA-AGGGGGGCCGGGCCGATCCCCGGCTTG
64 ATCGAGGGTTGTGGCAGCGGGATCAG-ACAGCACGTAGA-GGGGACCGGGTCGATCCCCGGCTTG
* * * *
15416020 TGCATTCTGCCTCTCCAGCCTAATGACCACC
127 CGCATTCTGCCTCTCCGGCC-ACTGAGCACC
* * * *
15416051 CACACGCCCATTCTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCTCTAGCCGG
1 CGCACGCTCATT-TATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCTA-CCGG
* * * * *
15416116 ATCGAGGGTTGTGGCAGTGGGA-CAGGCAGTATGTAGAGGTGGACTGGGTCGATCCCCGGCTTGC
64 ATCGAGGGTTGTGGCAGCGGGATCAGACAGCACGTAGAGG-GGACCGGGTCGATCCCCGGCTTGC
* * * **
15416180 GTATTATGCCTCTCCGGCCAGCTCAGTGCC
128 GCATTCTGCCTCTCCGGCCA-CTGAGCACC
* * * * * *
15416210 TGCACGCTCATTTTTTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTGTAAGATCGAACCG
1 CGCACGCTCA-TTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTC-TACCG
* * * * *
15416274 GA-CTGAGGGTTGTAGCAGCAGGATCA-ACAGCACGTAG-GGGGACCGAGTCAATCCCCGACTTG
63 GATC-GAGGGTTGTGGCAGCGGGATCAGACAGCACGTAGAGGGGACCGGGTCGATCCCCGGCTTG
*
15416336 CGCATTCTACCTCTCCGGCCGACTGAGCACC
127 CGCATTCTGCCTCTCCGGCC-ACTGAGCACC
* * *
15416367 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGACGTTCATTCCATGTCTAAGC
1 CGCACGCTCATTT-ATGGGTTGGCTTAGGCATACGGA-GTTCATTCCATGTCTAAGC
15416424 ATATGGAGTT
Statistics
Matches: 303, Mismatches: 55, Indels: 31
0.78 0.14 0.08
Matches are distributed among these distances:
156 3 0.01
157 73 0.24
158 26 0.09
159 191 0.63
160 10 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
CGCACGCTCATTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCTACCGGAT
CGAGGGTTGTGGCAGCGGGATCAGACAGCACGTAGAGGGGACCGGGTCGATCCCCGGCTTGCGCA
TTCTGCCTCTCCGGCCACTGAGCACC
Found at i:15416395 original size:157 final size:160
Alignment explanation
Indices: 15416066--15416422 Score: 379
Period size: 157 Copynumber: 2.3 Consensus size: 160
15416056 GCCCATTCTA
* * * * *
15416066 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTGTAAGCTCTAGCCGGATCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTGTAAGATCGAACCGGATCGAGGGTTGTAG
** * * * * * * * * *
15416130 CAGTGGGACAGGCAGTATGTAGAGGTGGACTGGGTCGATCCCCGGCTTGCGTATTATGCCTCTCC
66 CAGCAGGACAGACAGCACGTAGAGGTGGACCGAGTCAATCCCCGACTTGCGCATTATACCTCTCC
** * **
15416195 GGCCAGCTCAGTGCCTGCACGCTCATTTTT
131 GGCCAGCTCAGCACCCGCACGCTCATTTCG
*
15416225 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTGTAAGATCGAACCGGA-CTGAGGGTTGTA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTGTAAGATCGAACCGGATC-GAGGGTTGTA
*
15416288 GCAGCAGGATCA-ACAGCACGTAG-GG-GGACCGAGTCAATCCCCGACTTGCGCATTCTACCTCT
65 GCAGCAGGA-CAGACAGCACGTAGAGGTGGACCGAGTCAATCCCCGACTTGCGCATTATACCTCT
* * *
15416350 CCGGCC-GACTGAGCACCCGTACGCTCGTTTCG
129 CCGGCCAG-CTCAGCACCCGCACGCTCATTTCG
*
15416382 TGGGTTGGCTTAGGCATACGGACGTTCATT-CCATGTCTAAG
1 TGGGTTGGCTTAGGCATACGGA-GTTCATTCCCATGTGTAAG
15416423 CATATGGAGT
Statistics
Matches: 164, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
156 1 0.01
157 76 0.46
158 16 0.10
159 66 0.40
160 5 0.03
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (160 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTGTAAGATCGAACCGGATCGAGGGTTGTAG
CAGCAGGACAGACAGCACGTAGAGGTGGACCGAGTCAATCCCCGACTTGCGCATTATACCTCTCC
GGCCAGCTCAGCACCCGCACGCTCATTTCG
Found at i:15416435 original size:26 final size:27
Alignment explanation
Indices: 15416395--15416448 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
15416385 GTTGGCTTAG
15416395 GCATACGGACGTTCATT-CCATGTCTAA
1 GCATACGGACGTTCATTCCCA-GTCTAA
*
15416422 GCATATGGA-GTTCATTCCCAGTCTAA
1 GCATACGGACGTTCATTCCCAGTCTAA
15416448 G
1 G
15416449 ATCATGTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (27 bp):
GCATACGGACGTTCATTCCCAGTCTAA
Found at i:15417591 original size:159 final size:159
Alignment explanation
Indices: 15417264--15417597 Score: 354
Period size: 159 Copynumber: 2.1 Consensus size: 159
15417254 TACCACCCGT
* * *
15417264 TCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTTGGCTGAACGCCTGCACGCCCGTTTCATGGC
1 TCGATCCCCGGCTTGCGCATTATGCCTCTCTAGCTGGCTCAACGCCTGCACGCCCGTTTCATGGC
* * * * * ** *
15417329 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATGCACAGCTGGACTAAGGGTTGTGGCAGCT
66 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAATGCACAGATAGACCAAGGGTTGCAGCAGCA
* *
15417394 GGATCGGCAGCACACAGAGGGGGACCGGG
131 GGATCGACAGCACACAGAGGGGGACCGGA
* * ** * * *
15417423 TCAAACCCCGGCTTTTGCATTATGCCTCT-TCGGCTGGCTCAGCGCCTGCACGCTCGTTTCATGG
1 TCGATCCCCGGCTTGCGCATTATGCCTCTCT-AGCTGGCTCAACGCCTGCACGCCCGTTTCATGG
* * * * *
15417487 GTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAA-G-ATCAGATCAGACCGATGGTTGCAGT
65 CTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAATGCA-CAGAT-AGACCAAGGGTTGCAGC
*
15417549 AGCAGGATCGACAGCACACAGGGGGGGACTC-GA
127 AGCAGGATCGACAGCACACAGAGGGGGAC-CGGA
15417582 TCGATCCCCGGCTTGC
1 TCGATCCCCGGCTTGC
15417598 ATTTTTTGCG
Statistics
Matches: 140, Mismatches: 30, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 6 0.04
159 129 0.92
160 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
TCGATCCCCGGCTTGCGCATTATGCCTCTCTAGCTGGCTCAACGCCTGCACGCCCGTTTCATGGC
TTGACTTAGGCATACGGAGTTCATTCCATGTCTAATGCACAGATAGACCAAGGGTTGCAGCAGCA
GGATCGACAGCACACAGAGGGGGACCGGA
Found at i:15418618 original size:159 final size:158
Alignment explanation
Indices: 15418421--15418709 Score: 341
Period size: 159 Copynumber: 1.8 Consensus size: 158
15418411 TGTGGCAGCT
* * * *
15418421 GGATCGGCAGCACACAGAGGGGGACCGGGTCAAACCCCGGCTTTTGCA-TTATGCCTCTTCGGCT
1 GGATCGACAGCACACAGAGGGGGACCGGATCAAACCCCGGC--TTGCATTTATGCCTCTCCGGCC
* * * *
15418485 GGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTA
64 GACTCAGCGCCGGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTA
15418549 AGATCAGATCAGACCGATGCTTGCAATTGCA
128 AGATCAGATCAGACCGATGCTTGCAATTGCA
* * * * *
15418580 GGATCGACAGCACACAGGGGGGGACTC-GATCGATCCCCGGCTTGCATTTTTTGCGTCTCCGGCC
1 GGATCGACAGCACACAGAGGGGGAC-CGGATCAAACCCCGGCTTGCA-TTTATGCCTCTCCGGCC
* * ** * *
15418644 GACTGAGCGCCGGCATGCTCATTTTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAA
64 GACTCAGCGCCGGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
15418709 G
129 G
15418710 CATACGAAGT
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
157 5 0.05
158 3 0.03
159 98 0.92
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.26
Consensus pattern (158 bp):
GGATCGACAGCACACAGAGGGGGACCGGATCAAACCCCGGCTTGCATTTATGCCTCTCCGGCCGA
CTCAGCGCCGGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGA
TCAGATCAGACCGATGCTTGCAATTGCA
Found at i:15418721 original size:26 final size:26
Alignment explanation
Indices: 15418685--15418735 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15418675 TGGCTTAGGT
*
15418685 ATACGGAGTTCA-TTCCATGTCTAAGC
1 ATACGAAGTTCATTTCCA-GTCTAAGC
15418711 ATACGAAGTTCATTTCCAGTCTAAG
1 ATACGAAGTTCATTTCCAGTCTAAG
15418736 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTTCCAGTCTAAGC
Found at i:15419434 original size:26 final size:26
Alignment explanation
Indices: 15419398--15419448 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15419388 TGACTTAGAC
15419398 ATACAAAGTTCATCCCCAGTCTAAGG
1 ATACAAAGTTCATCCCCAGTCTAAGG
* * *
15419424 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACAAAGTTCATCCCCAGTCTAAG
15419449 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAAAGTTCATCCCCAGTCTAAGG
Found at i:15419807 original size:159 final size:157
Alignment explanation
Indices: 15419430--15419924 Score: 379
Period size: 159 Copynumber: 3.1 Consensus size: 157
15419420 AAGGATACGA
* * * * *
15419430 AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATTGATAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGTGGCAGTAGGATCGATAGCACGCAG
** * * * * *
15419495 AGGGGACCAGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCC
65 AGGGGACCAGGTCAATCCCCGACTTGCACATTATGCCTCTCAGATCGGCTCAGCACCCGCACGCC
* * ***
15419560 CGTTTCATGGGTTGGCTTAGGCATGGGG
130 CATTTCATGGGTTGACTTAGGCATACAG
** * * *** * *
15419588 AGTTCATT-CCATGTCTAAGCCCCAG-TCAGACTGAGGGTTGTGGCAACGGGACCGGTAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGAC-GAGGGTTGTGGCAGTAGGATCGATAGCACGC
* * * * * * *
15419651 AGAGGGGAATCGGGTCAATCCCTGACTTGCACATTATGCCTCTCTAGCT-GGCTCATCCCCCGTA
63 AGAGGGG-ACCAGGTCAATCCCCGACTTGCACATTATGCCTCTC-AGATCGGCTCAGCACCCGCA
** *
15419715 CGTTCATTTCGTGGGTTGACTTAGGCATACAG
126 CGCCCATTTCATGGGTTGACTTAGGCATACAG
* *
15419747 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGTGGCAGTAGGATCGATAGCACGCA-
* * * ** * * * * * * *
15419812 GTGGGGATCGGGTTGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCACCCGCACG
64 GAGGGGACCAGGTCAATCCCCGA-CTTGCACATTATGCCTCTCAGATCGGCTCAGCACCCGCACG
* * * *
15419876 CTCGTTTCATGGGTTGGCTTAGGCATACGG
128 CCCATTTCATGGGTTGACTTAGGCATACAG
15419906 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
15419925 CATATGGAGT
Statistics
Matches: 259, Mismatches: 66, Indels: 23
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 57 0.22
159 188 0.73
160 11 0.04
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGTGGCAGTAGGATCGATAGCACGCAGA
GGGGACCAGGTCAATCCCCGACTTGCACATTATGCCTCTCAGATCGGCTCAGCACCCGCACGCCC
ATTTCATGGGTTGACTTAGGCATACAG
Found at i:15419928 original size:26 final size:26
Alignment explanation
Indices: 15419898--15419950 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15419888 GTTGGCTTAG
15419898 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15419924 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15419950 G
1 G
15419951 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15420161 original size:12 final size:12
Alignment explanation
Indices: 15420144--15420174 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15420134 CGAGGGTTGT
15420144 GACAGCAAGACC
1 GACAGCAAGACC
*
15420156 GACAGCAAGATC
1 GACAGCAAGACC
15420168 GACAGCA
1 GACAGCA
15420175 CGTAGATAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.26, T:0.03
Consensus pattern (12 bp):
GACAGCAAGACC
Found at i:15420780 original size:298 final size:298
Alignment explanation
Indices: 15420253--15420816 Score: 724
Period size: 298 Copynumber: 1.9 Consensus size: 298
15420243 GCTCGTATCA
* * *
15420253 TGGGTTAACTTAGGCATATAGAGTTGATCCCCAGTCTAAGCATACGGAGTTTATTTCCAGTCTAA
1 TGGGTTAACTTAGGCATATAGAGTTGATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * ** * * * **
15420318 GATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGTGGACCGGGTCGATCC
66 GATCAGACCAGACCAAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGTGGACCCGACCGATCC
* * * * * *
15420383 CTAGCTCACACATTCTGCCTCTCTGGTCGATTGAGCACCCACATGCCCGTTTCGTGGGTTGGCTT
131 CGAGCTCACACATTCTGCCTCTCCGATCGATTGAGCACCCACACGCCCATTTCATGGGTTGGCTT
* * *
15420448 AGGCATAGGGAGTTCATTCCAATTCTATGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGG
196 AGGCATAGGGAGTTCAGTCCAATTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGG
15420513 CAGCACGCAGAGGGTTGAGCACCCGTACACTCATTTCG
261 CAGCACGCAGAGGGTTGAGCACCCGTACACTCATTTCG
* *
15420551 TGGGTTAACTTAGGCATATGGAGTTCG-TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTA
1 TGGGTTAACTTAGGCATATAGAGTT-GATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * * * *
15420615 AGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCAACGGCATGCAGGAG-GGACCCGACCGAT
65 AGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCAACAGCACGCAGG-GTGGACCCGACCGA-
** * * *
15420679 TCCCGA-CTTGCGCATTCTGCCTCTCCGATCGGCTT-AGCACCCGCACGCCCATTTCATGGGTTG
128 TCCCGAGCTCACACATTCTGCCTCTCCGATC-GATTGAGCACCCACACGCCCATTTCATGGGTTG
* * *
15420742 GCTTAGTCATAGGGAGTTCAGTCC-ATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGG
192 GCTTAGGCATAGGGAGTTCAGTCCAAT-TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGG
15420806 ACCGGCAGCAC
256 ACCGGCAGCAC
15420817 ATAGAGGGGG
Statistics
Matches: 225, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
297 2 0.01
298 213 0.95
299 10 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (298 bp):
TGGGTTAACTTAGGCATATAGAGTTGATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCAAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGTGGACCCGACCGATCC
CGAGCTCACACATTCTGCCTCTCCGATCGATTGAGCACCCACACGCCCATTTCATGGGTTGGCTT
AGGCATAGGGAGTTCAGTCCAATTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGG
CAGCACGCAGAGGGTTGAGCACCCGTACACTCATTTCG
Found at i:15422189 original size:158 final size:159
Alignment explanation
Indices: 15421966--15422330 Score: 452
Period size: 159 Copynumber: 2.3 Consensus size: 159
15421956 CCACATGCCT
* * *
15421966 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAAACCGAGGGT
* * * * *
15422031 TGTGGCAGTGGGATCGACAGCACACAGAG-GGGATCGGATCGGTCCCCGGCTTACGCATTATGCC
66 TGTGACAGTAGGATCGACAGCACACAGAGAGGGAGCGGATCGATCCCCAGCTTACGCATTATGCC
*
15422095 TCTCCAGCT-GGCTCAATGCCCACACGCTC
131 TCTCC-GATAGGCTCAATGCCCACACGCTC
* * **
15422124 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACCAAACC-ATG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAAACCGA-G
* * * * * *
15422186 GGTTGTGATAGTAGGATCGATAGCACGCAGGGAGGGAGCGGGTCGATCCCCAGCTTACGCATTCT
63 GGTTGTGACAGTAGGATCGACAGCACACAGAGAGGGAGCGGATCGATCCCCAGCTTACGCATTAT
* * * *
15422251 GTCTCTCCGATAGGCTGAGTGCCCGCACGCTC
128 GCCTCTCCGATAGGCTCAATGCCCACACGCTC
15422283 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15422331 TATGGAGTTC
Statistics
Matches: 175, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
157 3 0.02
158 77 0.44
159 94 0.54
160 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAAACCGAGGGT
TGTGACAGTAGGATCGACAGCACACAGAGAGGGAGCGGATCGATCCCCAGCTTACGCATTATGCC
TCTCCGATAGGCTCAATGCCCACACGCTC
Found at i:15422352 original size:26 final size:26
Alignment explanation
Indices: 15422302--15422354 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15422292 GTTGGCTTAG
*
15422302 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
15422328 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15422354 G
1 G
15422355 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15422492 original size:26 final size:26
Alignment explanation
Indices: 15422462--15422514 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15422452 GTTGGCTTTG
*
15422462 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
15422488 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15422514 G
1 G
15422515 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15423101 original size:26 final size:26
Alignment explanation
Indices: 15423058--15423108 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15423048 TGACTTAGGC
15423058 ATACGGAGTTAATCCCCAGTCTAAGT
1 ATACGGAGTTAATCCCCAGTCTAAGT
* *
15423084 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTAATCCCCAGTCTAAG
15423109 ATCAGACAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTAATCCCCAGTCTAAGT
Found at i:15423442 original size:159 final size:156
Alignment explanation
Indices: 15423084--15423444 Score: 354
Period size: 159 Copynumber: 2.3 Consensus size: 156
15423074 CAGTCTAAGT
* *
15423084 ATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGGA-TCGAGGGTTGTGACAGCAGGATCAATA
1 ATACGGAGTTCATT-CCAGTCTAAGATCAGACTA-GACT-GAGGGTTGTGACAGCAGGACCAACA
* * * *
15423147 ACACGCAGGGGGATCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGTGCCC
63 ACACGCAGGGGGATCGGGCCGATCCTCAGCTTGCCCATTATGCCTCTCCAGCCGACTCAGTGCCC
** * * *
15423212 TCACGCCCGTTTCATGGGTTGGCTTAGGC
128 GAACGCCCATTCCATGGGTTGACTTAGGC
* ** * * * ** *
15423241 ATAGGGAGTTCATTCCATGTCTAAGCCCTA-ACTGGACCGAGGGTTGTGGCAGCAGGACCGGCAG
1 ATACGGAGTTCATTCCA-GTCTAAGATC-AGACTAGACTGAGGGTTGTGACAGCAGGACCAACAA
* * * *
15423305 CATGTAGAGGGGGATCGGGCCGATCC-CTGGCTTGCCCATTATGCCTCTCCGGCC-AGCTCAGTG
64 CACG--CAGGGGGATCGGGCCGATCCTC-AGCTTGCCCATTATGCCTCTCCAGCCGA-CTCAGTG
* *
15423368 CCCGAACGCTCATTCCGTGGGTTGACTTAGGC
125 CCCGAACGCCCATTCCATGGGTTGACTTAGGC
*
15423400 ATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACTGAGGGTT
1 ATACGGAGTTCATTCC-AGTCTAAGATCAGACTAGACTGAGGGTT
15423445 ACGATAGTAG
Statistics
Matches: 162, Mismatches: 32, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
156 3 0.02
157 48 0.30
158 3 0.02
159 107 0.66
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
ATACGGAGTTCATTCCAGTCTAAGATCAGACTAGACTGAGGGTTGTGACAGCAGGACCAACAACA
CGCAGGGGGATCGGGCCGATCCTCAGCTTGCCCATTATGCCTCTCCAGCCGACTCAGTGCCCGAA
CGCCCATTCCATGGGTTGACTTAGGC
Found at i:15423465 original size:159 final size:159
Alignment explanation
Indices: 15423153--15423582 Score: 357
Period size: 159 Copynumber: 2.7 Consensus size: 159
15423143 AATAACACGC
* * * * **
15423153 AGGGGGATCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGTGCCCTCACGC
1 AGGGGGATCGGGCCGATCCTCAGCTTGCCCATTATGCCTCTCCAGCCGACTCAGTGCCCGAACGC
* * * * * * *
15423218 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACTGGACCGAGG
66 CCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCGAACTAGACCGAGG
** * * *
15423283 GTTGTGGCAGCAGGACCGGCAGCATGTAG
131 GTTACGACAGCAGGACCGACAGCACGTAG
* *
15423312 AGGGGGATCGGGCCGATCC-CTGGCTTGCCCATTATGCCTCTCCGGCC-AGCTCAGTGCCCGAAC
1 AGGGGGATCGGGCCGATCCTC-AGCTTGCCCATTATGCCTCTCCAGCCGA-CTCAGTGCCCGAAC
* * * * *
15423375 GCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCGGACTAGACTG
64 GCCCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCGAACTAGACCG
* * *
15423439 AGGGTTACGATAGTAGGATCGACAGCACGTAG
128 AGGGTTACGACAGCAGGACCGACAGCACGTAG
** * * * * * * * ** * * ** *
15423471 -GGGGGGCCAGGCCGGT-CTCCGACTTACGCATTCTGCCTCCCCAGTAGGCTGAACGCCCGCACG
1 AGGGGGATCGGGCCGATCCTCAG-CTTGCCCATTATGCCTCTCCAGCCGACTCAGTGCCCGAACG
* * * *
15423534 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 CCCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
15423583 CATATGGAGT
Statistics
Matches: 215, Mismatches: 49, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.40
159 126 0.59
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGGGGATCGGGCCGATCCTCAGCTTGCCCATTATGCCTCTCCAGCCGACTCAGTGCCCGAACGC
CCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCGAACTAGACCGAGG
GTTACGACAGCAGGACCGACAGCACGTAG
Found at i:15423586 original size:26 final size:26
Alignment explanation
Indices: 15423556--15423608 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15423546 GTTGGCTTAG
*
15423556 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
*
15423582 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
15423608 G
1 G
15423609 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15423795 original size:26 final size:26
Alignment explanation
Indices: 15423765--15423814 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15423755 TTTGACTTAG
15423765 GCATACAGAGTTCATCCCCAGTCTGA
1 GCATACAGAGTTCATCCCCAGTCTGA
*
15423791 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
15423815 AAGATCAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTGA
Found at i:15425054 original size:27 final size:26
Alignment explanation
Indices: 15424995--15425074 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15424985 GTTGGCTTAG
*
15424995 GCATACGGAGTTCATACCATGTCTAA
1 GCATACGAAGTTCATACCATGTCTAA
15425021 GCATACGAAGTTCATACCATGTTCTAA
1 GCATACGAAGTTCATACCATG-TCTAA
* *
15425048 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATACCATGTCTAA
15425074 G
1 G
15425075 AATGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
26 26 0.52
27 24 0.48
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATACCATGTCTAA
Found at i:15425590 original size:121 final size:121
Alignment explanation
Indices: 15425373--15425597 Score: 288
Period size: 121 Copynumber: 1.9 Consensus size: 121
15425363 CTGCCTCTCT
* * * * * *
15425373 GGGCCGACTGAGCACCTGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCGATG
1 GGGCCGACTAAGCACCCGCACACCCATTTCATAGGTTGGCATAGGCATAGGGAATTCATTCCATG
* * ** *
15425438 TCTAAGCTCCAATCGGACCGAGGGTTATGGCAGTGGGACTAGCTGCACGCAGAGGG
66 TCTAAGCCCCAACCAAACCGAGGGTTATGGCAGCGGGACTAGCTGCACGCAGAGGG
* * * *
15425494 GGGCCGACTAAGCACCCGTACGCCCGTTTCGTAGGTTGGCATAGGCATAGGGAATTCATTCCATG
1 GGGCCGACTAAGCACCCGCACACCCATTTCATAGGTTGGCATAGGCATAGGGAATTCATTCCATG
* * *
15425559 TCTAAGCCCCAGCCAAACTGAGGGTTGTGGCAGCGGGAC
66 TCTAAGCCCCAACCAAACCGAGGGTTATGGCAGCGGGAC
15425598 CGACAGCATG
Statistics
Matches: 86, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
121 86 1.00
ACGTcount: A:0.22, C:0.25, G:0.32, T:0.21
Consensus pattern (121 bp):
GGGCCGACTAAGCACCCGCACACCCATTTCATAGGTTGGCATAGGCATAGGGAATTCATTCCATG
TCTAAGCCCCAACCAAACCGAGGGTTATGGCAGCGGGACTAGCTGCACGCAGAGGG
Found at i:15427261 original size:910 final size:900
Alignment explanation
Indices: 15425697--15427535 Score: 2755
Period size: 910 Copynumber: 2.0 Consensus size: 900
15425687 GTTGGCTTAG
* *
15425697 GCATACGGAGTTCAATCCCAGTGTAAGAGTTTGAGCCACGGTACACATGATGGGCTCGGGCATGT
1 GCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTACACATGATGGGCTCGGGCATGT
* * * * *
15425762 GCTGGTGGTGCATTTTTTTCGCTCGGGCACCATCGCCGGAGCATCGTCAGAGAGCCTAACCGGCG
66 ACTGGTGCTGCATTTTTTTCGCCCGGGCACCATCGCCGGAGCATCGCCAGAGAGCCTAACCGACG
**
15425827 GCATTAGGGTTCCGACAATTGGGTAGGCCGGGAGTGTGCGCACATGATGTGTGATGGGTGCTGGT
131 GCATTAGGGTTCCGACAATTGGG-AGGCCGGGAGTGTGCGCACATGATGTGCAATGGGTGCTGGT
* ** *
15425892 ACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
195 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAA
* *
15425957 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACCTTTTT
260 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTT
* *
15426022 CAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAATAAA
325 CAAACAGTCACAAAATCTTCTCCACTACGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAATAAA
15426087 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCT
390 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCT
*
15426152 CGAACCACAAAAAGTTTCAAAAATAATGAAAAATAGAAAATGGGTCGTCTTGCCACAAAAATCAC
455 CGAACCACAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGGGTCGTCTTGCCACAAAAATCAC
* **
15426217 ATGAAGCTGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAA
520 ATGAAGCTGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACAGCAAAAA
* *
15426282 TATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCTTGCCTCTCT
585 TATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCTTGCCTCTCT
* * *
15426347 GGTCAGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATCTCCAGT
650 GGTCAGCTGAGCGTCCGCACACTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATCCCCAGT
** * *
15426412 CTAAGCATACGGAGTTCATTTTGAGTCTAATATCAGACCGGACCAAGGGTTACGATAGCAGGATC
715 CTAAGCATACGGAGTTCATTCCGAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAGGATC
* * *
15426477 GACAGTACACAAGGGGGACCGAGTCGGTCCTCGACTTGCGCATTCTGCCTCTCC-GACCGACTGA
780 GACAAT-CAC-AGGGGGACCGAGTCGGTCCTCG-CTTACGCATTCTGCCTCTCCAGACCGACTAA
*
15426541 GCGCCCGCACGTTCGTTTCATG-GATTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
842 GCGCCCGCACGCTCGTTTCATGCG-TTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
* * * *
15426600 GCATATGGAGTTCATTCCCAATCTAAGAGTTTGAGCCACGGTGCACATGCT-GGCTCGGGCATGT
1 GCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTACACATGATGGGCTCGGGCATGT
*
15426664 ATTGGTGCTGCATTTTTTTCGCCCGGGCACCATCGTCGAAGCATCGTCGGAGCATCGCCCAGAGA
66 ACTGGTGCTGCATTTTTTTCGCCCGGGCACCA---TC---G---C--CGGAGCATCG-CCAGAGA
* * * *
15426729 GCCTAACCGACGGCATTGCGGGTTCTGACGATT-GG-GG-CGAGGGGTGTGCGCACACT-ATGTG
119 GCCTAACCGACGGCATT-AGGGTTCCGACAATTGGGAGGCCG-GGAGTGTGCGCACA-TGATGTG
15426790 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
181 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
15426855 ACCCCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTAAAAT
246 ACCCCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
15426919 GGGGACACTTTTTTCAAACAGTCACATAATCTTCTCCACTACGAGTTTTTAGCTAAATTTTTTTG
311 GGGGACACCTTTTTCAAACAGTCACAAAATCTTCTCCACTACGAGTTTTTAGCTAAATTTTTTTG
* *
15426984 TGCATGCCAA-CAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTGTAAAAAA
376 TGCATGCCAATAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAA
* * ** *
15427048 ATTTTAAAAAATCTCGATCCATAAAAAGTTTCAAAAATCGTGAAAGATAGAAAACGGGTCGTCTT
441 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGGGTCGTCTT
15427113 GCCACGAAAAATCACATGAAGGC-GTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
506 GCCAC-AAAAATCACATGAA-GCTGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15427177 A-TAGCACAGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTA
569 ATTAGCACAGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTA
* * * *
15427241 CGCATCTTGCCTCTCTGGTCAGCTGAGTGTCCGTACACTCGTTTTGTGGGTTGACTTAGGCATAC
634 CGCATCTTGCCTCTCTGGTCAGCTGAGCGTCCGCACACTCGTTTCGTGGGTTGACATAGGCATAC
* * *
15427306 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCGAGTCTAAGATCGGATCAGACCAAGGG
699 AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCGAGTCTAAGATCAGACCAGACCAAGGG
* * * * * *
15427371 TTACGATAGCAGGATCGACAATCGCAGGGGGATCGGGTCGGTCCTCGGTTACGCATTTTGCGTCT
764 TTACGATAGCAGGATCGACAATCACAGGGGGACCGAGTCGGTCCTCGCTTACGCATTCTGCCTCT
* * * *
15427436 CCAGCCCGACTAAGCGCCTGCACGCTCGTTTTATGCGTTGGCTTAGGCATATGGAGTTCATTCCA
829 CCAGACCGACTAAGCGCCCGCACGCTCGTTTCATGCGTTGGCTTAGGCATACGGAGTTCATTCCA
*
15427501 TGTCTAA
894 TGTCAAA
*
15427508 GCGTACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
15427536 TTGGACCGGA
Statistics
Matches: 843, Mismatches: 74, Indels: 33
0.89 0.08 0.03
Matches are distributed among these distances:
902 41 0.05
903 45 0.05
905 2 0.00
907 16 0.02
908 106 0.13
909 3 0.00
910 310 0.37
911 141 0.17
912 132 0.16
913 11 0.01
914 24 0.03
915 12 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTACACATGATGGGCTCGGGCATGT
ACTGGTGCTGCATTTTTTTCGCCCGGGCACCATCGCCGGAGCATCGCCAGAGAGCCTAACCGACG
GCATTAGGGTTCCGACAATTGGGAGGCCGGGAGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAAC
ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTC
AAACAGTCACAAAATCTTCTCCACTACGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAATAAAA
ATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTC
GAACCACAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGGGTCGTCTTGCCACAAAAATCACA
TGAAGCTGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACAGCAAAAAT
ATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACGCATCTTGCCTCTCTG
GTCAGCTGAGCGTCCGCACACTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATCCCCAGTC
TAAGCATACGGAGTTCATTCCGAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAGGATCG
ACAATCACAGGGGGACCGAGTCGGTCCTCGCTTACGCATTCTGCCTCTCCAGACCGACTAAGCGC
CCGCACGCTCGTTTCATGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
Found at i:15427336 original size:26 final size:26
Alignment explanation
Indices: 15427300--15427352 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15427290 GTTGACTTAG
15427300 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15427326 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15427352 G
1 G
15427353 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15427860 original size:26 final size:26
Alignment explanation
Indices: 15427824--15427876 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15427814 GTTGACTTAG
15427824 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
15427850 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15427876 G
1 G
15427877 ATTAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15428338 original size:26 final size:26
Alignment explanation
Indices: 15428309--15428361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15428299 GTTAGCTTAG
*
15428309 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15428335 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15428361 G
1 G
15428362 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15428537 original size:26 final size:26
Alignment explanation
Indices: 15428507--15428559 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15428497 GTTGGCTTAG
15428507 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15428533 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15428559 G
1 G
15428560 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15429037 original size:26 final size:26
Alignment explanation
Indices: 15428998--15429050 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15428988 GTTGGCTTAG
15428998 GCATACGGAATTCATTCCTTA-TCTAA
1 GCATACGGAATTCATTCC-TAGTCTAA
* *
15429024 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
15429050 G
1 G
15429051 AGTTTGAGCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:15429731 original size:26 final size:26
Alignment explanation
Indices: 15429695--15429747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15429685 GTTGAATTAG
15429695 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
15429721 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
15429747 G
1 G
15429748 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:15430104 original size:159 final size:155
Alignment explanation
Indices: 15429721--15430151 Score: 381
Period size: 159 Copynumber: 2.7 Consensus size: 155
15429711 CCCAGTCTAA
* * * * *
15429721 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTGCGGTAGCAGGGTCCAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCAGACAGAGGGTTGCGGTAGCAGGATCAAC
* * * * * * * *
15429785 AGCACGCAGGGGGGATCAGACCGAT-CTCGGGCTTGCGTATTCGACCTCTCCGCTGGCTGAGCGC
64 AGCACGCAGAGGGGATCAGGCCGATCCTC-GGCTTACGCATTTG-CCTCTCCGCTGGCTCAACAC
* ** * *
15429849 CCGCACACCCATTTTTTGGGTTGGCTTAG
127 CCACACACCCATTTCGTGGGTTGACGTAG
* ** * * *
15429878 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGC-GAGA-CTA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACAGAGGGTTGCGGTAGCAG-GATC-A
* * * *
15429940 GCAGCATGCAGAAGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACTGGCTCAA
62 ACAGCACGCAG-AGGGGATCAGGCCGATCCTCGGCTTACGCATT-TGCCTCTCCG-CTGGCTCAA
* *
15430005 CACCCACACGCTCATTTCGTGGGTTGACGTAG
124 CACCCACACACCCATTTCGTGGGTTGACGTAG
*
15430037 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACAGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCAGGATCAACA
* *
15430102 GCACGCAG-GAGGGATCAGGCC-AGTCCTTGGCTTACGCATTCTACCTCTCC
65 GCACGCAGAG-GGGATCAGGCCGA-TCCTCGGCTTACGCATT-TGCCTCTCC
15430152 AACCGACTGA
Statistics
Matches: 216, Mismatches: 43, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
156 5 0.02
157 52 0.24
158 66 0.31
159 90 0.42
160 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCAGGATCAACAG
CACGCAGAGGGGATCAGGCCGATCCTCGGCTTACGCATTTGCCTCTCCGCTGGCTCAACACCCAC
ACACCCATTTCGTGGGTTGACGTAG
Found at i:15430200 original size:158 final size:156
Alignment explanation
Indices: 15429721--15430219 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 156
15429711 CCCAGTCTAA
* * * * *
15429721 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTGCGGTAGCAGGGTCCAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAG-ACCAGACAGAGGGTTGCGGTAGCAGGATCAAC
* * * * * *
15429785 AGCACGCAGGGGGGATCAGACCGAT-CTCGGGCTTGCGTATTCGACCTCTCCGCTGGCTGAGCGC
64 AGCACGCAGGAGGGATCAGGCCGATCCTC-GGCTTACGCATTCTACCTCTCCACTGGCTGAGCGC
* * **
15429849 CCGCACACCCATTTTTTGGGTTGGCTTAG
128 CCGAACGCCCATTTCATGGGTTGGCTTAG
* ** * * *
15429878 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGC-GAGA-CTA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACAGAGGGTTGCGGTAGCAG-GATC-A
* * * * * * * * *
15429940 GCAGCATGCAGAAGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACTGGCTCAA
62 ACAGCACGCAGGA-GGGATCAGGCCGATCCTCGGCTTACGCATTCTACCTCTCC-ACTGGCTGAG
* * * * *
15430005 CACCC-ACACGCTCATTTCGTGGGTTGACGTAG
125 CGCCCGA-ACGCCCATTTCATGGGTTGGCTTAG
*
15430037 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACAGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCAGGATCAACA
* * * *
15430102 GCACGCAGGAGGGATCAGGCC-AGTCCTTGGCTTACGCATTCTACCTCTCCAACCGACTGAGTGC
65 GCACGCAGGAGGGATCAGGCCGA-TCCTCGGCTTACGCATTCTACCTCTCC-ACTGGCTGAGCGC
* *
15430166 CCGAACGCGCGTTTCATGGGTTGGCTTAG
128 CCGAACGCCCATTTCATGGGTTGGCTTAG
15430195 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCA-GTCTA
15430220 GGCATACGAA
Statistics
Matches: 266, Mismatches: 60, Indels: 31
0.75 0.17 0.09
Matches are distributed among these distances:
156 5 0.02
157 52 0.20
158 116 0.44
159 90 0.34
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCAGGATCAACAG
CACGCAGGAGGGATCAGGCCGATCCTCGGCTTACGCATTCTACCTCTCCACTGGCTGAGCGCCCG
AACGCCCATTTCATGGGTTGGCTTAG
Found at i:15430344 original size:184 final size:183
Alignment explanation
Indices: 15430034--15430402 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 183
15430024 TGGGTTGACG
* *
15430034 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACAGAGGGTTGCGGTAGCAGGATCA
1 TAGGCATACGAAGTTCAATCCTAGTCTAAGATCAGACTAGACAGAGGGTTGCGGTAGCAGGATCA
* * *
15430099 ACAGCACGCAGGAGGGATCAGGCCAGTCCTTGGCTTACGCATTCTACCTCTCCAACCGACTGAGT
66 ACAGCACACAGGAGGGATCAGGCCAGTCCTCGGCTTACGCATTCTACCTCTCCAACCGACTGAGC
*
15430164 GCCCGAACGCGCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
131 GCCCGAACGCGCG-TTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
** * *
15430218 TAGGCATACGAAGTTCAATCCTAGTCTAAGATTGGA-TCGGACCGAGGGTTGCGGTAGCAGGATC
1 TAGGCATACGAAGTTCAATCCTAGTCTAAGATCAGACT-AGACAGAGGGTTGCGGTAGCAGGATC
* * * **
15430282 GACAGCACACAGG-GAGGATCGGGCC-GATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGACTG
65 AACAGCACACAGGAG-GGATCAGGCCAG-TCCTCGGCTTACGCATTCTACCTCTCCAACCGACTG
* * ** *
15430345 AGCGCCTGCACGCTTGTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
128 AGCGCCCGAACGCGCGTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
15430401 TA
1 TA
15430403 AGCCCCAATC
Statistics
Matches: 162, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
183 43 0.27
184 119 0.73
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
TAGGCATACGAAGTTCAATCCTAGTCTAAGATCAGACTAGACAGAGGGTTGCGGTAGCAGGATCA
ACAGCACACAGGAGGGATCAGGCCAGTCCTCGGCTTACGCATTCTACCTCTCCAACCGACTGAGC
GCCCGAACGCGCGTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
Found at i:15430591 original size:26 final size:26
Alignment explanation
Indices: 15430562--15430612 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15430552 GTTGATTTAG
*
15430562 GCATACGGAGGTCATCCCCAGTCTAT
1 GCATACAGAGGTCATCCCCAGTCTAT
* *
15430588 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGGTCATCCCCAGTCTA
15430613 AGATCGAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAT
Found at i:15431662 original size:26 final size:26
Alignment explanation
Indices: 15431626--15431678 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15431616 GTTGACTTAG
15431626 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15431652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15431678 G
1 G
15431679 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15432045 original size:26 final size:26
Alignment explanation
Indices: 15432015--15432067 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15432005 GTTGACTTAG
15432015 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
15432041 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15432067 G
1 G
15432068 ATCTAAGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15432408 original size:26 final size:26
Alignment explanation
Indices: 15432358--15432410 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15432348 GTTGGCTTAG
* *
15432358 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
15432384 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15432410 G
1 G
15432411 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15433117 original size:26 final size:26
Alignment explanation
Indices: 15433081--15433133 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15433071 GTTGACTTAG
15433081 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15433107 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15433133 G
1 G
15433134 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15433590 original size:157 final size:158
Alignment explanation
Indices: 15433107--15433595 Score: 487
Period size: 158 Copynumber: 3.1 Consensus size: 158
15433097 CCCAGTCTAA
*
15433107 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGA-GGTTGCGACAGCAGGATC-AG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGACAGCAGGATCGA-
* * * * *
15433169 CAGCACGCAGGGGGGATCGGGTCAATCCTCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCA
64 CAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGC-
* *
15433234 GCCCGGATGCCCATTTCATGGGTTGGCTTAG
128 GCCCGCATGCTCATTTCATGGGTTGGCTTAG
* ** * * ** * * *
15433265 GCATAGGGAGTTCATT-CCATGTC-AAGCCCCAG-CCAGACCGAGGGTTTTGGCAGCGGGACCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGACAGCAGGATC-G
* * * * * *
15433327 -CAGCACGCAGAGGGAGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCC-GATCGG-TGC
63 ACAGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCT-GGCTG-
* *
15433389 AGTGCCCGCATGCTCATTTCGTGGGTTGGCTTAG
125 AGCGCCCGCATGCTCATTTCATGGGTTGGCTTAG
* * * *
15433423 GTATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
* * *
15433488 GCACGTAGGGGGGA-CTGGGTCGATCCCCGACTTGCGCTTTCTACC-CTCCGGCTGGCTGAGCGC
66 GCACGCAGGGGGGATC-GGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGC
* **
15433551 CCGCACGCTTGTTTCATGGGTTGGCTTAG
130 CCGCATGCTCATTTCATGGGTTGGCTTAG
15433580 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
15433596 TCATGTCTAA
Statistics
Matches: 261, Mismatches: 54, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 62 0.24
158 127 0.49
159 72 0.28
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
CGCATGCTCATTTCATGGGTTGGCTTAG
Found at i:15433629 original size:26 final size:26
Alignment explanation
Indices: 15433580--15433632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15433570 GTTGGCTTAG
*
15433580 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15433606 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15433632 G
1 G
15433633 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15434690 original size:26 final size:26
Alignment explanation
Indices: 15434654--15434704 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15434644 TTGACTTAGG
15434654 CATACGGAGTTCATTCC-ATGTCTAAC
1 CATACGGAGTTCATTCCTA-GTCTAAC
15434680 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCTAGTCTAA
15434705 GAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAC
Found at i:15435405 original size:26 final size:26
Alignment explanation
Indices: 15435375--15435427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15435365 GTTGACTTAG
*
15435375 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
* *
15435401 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
15435427 G
1 G
15435428 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:15435609 original size:26 final size:26
Alignment explanation
Indices: 15435559--15435611 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15435549 GTTGGCTTAG
* *
15435559 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15435585 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15435611 G
1 G
15435612 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15435612 original size:184 final size:183
Alignment explanation
Indices: 15435302--15435770 Score: 582
Period size: 184 Copynumber: 2.5 Consensus size: 183
15435292 ACCACCCGTT
** * * *
15435302 CGATCCCCGGCTTGCGCACCCTACCTCTCTGGTCGGTTGAGCGTCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTTTC-GGTCGGTTGAGCGCCCGCACGCCCGTTTCATGGGT
* ** * *
15435367 TGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTACCAGTCTAAGATC
65 TGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTACCAATCTAAGATC
* * ** * *
15435431 GGACTGGACCGAGGGTTGCAGTAGTAGGATCGGTAGCACGCAGTGGG-GATCGGGC
129 GGACCGGACCGAGGGTTGCAGCAACAGGATCGGCAGCACGCAG-GGGTGACCGGGC
* * * *
15435486 TGATCCCCGACTTGCGCATTCTACCTATTCGGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCT-TTCGGTCGGTTGAGCGCCCGCACGCCCGTTTCATGGGT
* *
15435551 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTG
65 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTACCAATCTAAGATCG
*
15435616 GACCGGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCAGGGGTGACCGGGC
130 GACCGGACCGAGGGTTGCAGCAACAGGATCGGCAGCACGCAGGGGTGACCGGGC
* * * * * * * *
15435670 CAATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGATTGAGCACCCACACGCCCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCT-TTCGGTCGGTTGAGCGCCCGCACGCCCGTTTCATGGGT
* *
15435735 TGGGTTAGGCATAGGGAGTTCATTCCTTGTCTAAGC
65 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15435771 CCCAGTCGGA
Statistics
Matches: 244, Mismatches: 38, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
183 6 0.02
184 236 0.97
185 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (183 bp):
CGATCCCCGGCTTGCGCATTCTACCTTTCGGTCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTACCAATCTAAGATCGG
ACCGGACCGAGGGTTGCAGCAACAGGATCGGCAGCACGCAGGGGTGACCGGGC
Found at i:15435893 original size:159 final size:158
Alignment explanation
Indices: 15435619--15436088 Score: 372
Period size: 159 Copynumber: 3.0 Consensus size: 158
15435609 AAGATTGGAC
* * *
15435619 CGGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCAGGGGTGACCGGGCCAATCCTCGGCTTG
1 CGGACCGAGGGTTGCGCCAACAGGATCGGCAGCACGCAGGGGTGACCGGGCCAATCCCCGACTTG
* * * * * ** *
15435684 CACATTCTGCCTCTCCGGTCGATTGAGCACCCACACGCCCGTTTCATGGGTTGGGTTAGGCATAG
66 CACATTATGCCTCTCCGGCCGACTCAGCACCCACACGCCCATTTCATGGGTTGACTTAGGCATAC
**
15435749 GGAGTTCATTCCTTGTCTAAGCCCCAGT
131 GGAGTTCATTCCCAGTCTAAGCCCCAGT
* * * *
15435777 CGGACCGAGGGTTGTGCCAGCGGGA-CTGGCAGCACGGAGAGGGTGACCGGGCCAATCCCCGACT
1 CGGACCGAGGGTTGCGCCAACAGGATC-GGCAGCACGCAG-GGGTGACCGGGCCAATCCCCGACT
* ** * **
15435841 TGCGCATTATGCCTCTCCGGCC-AGCTCAGCACCTGCACGCTCATTTTGTGGGTTGACTTAGGCA
64 TGCACATTATGCCTCTCCGGCCGA-CTCAGCACCCACACGCCCATTTCATGGGTTGACTTAGGCA
** *
15435905 TACGGAGTTCATTCCCAGTCTAAG-ATCAGA
128 TACGGAGTTCATTCCCAGTCTAAGCCCCAGT
* *** * * * * * * *
15435935 CTGGACTGAGGGTTGCATTAGCAGGATAGACAGCACGCAGGGGGGGACTGGGTCAATCCCTGACT
1 C-GGACCGAGGGTTGCGCCAACAGGATCGGCAGCACGCA-GGGGTGACCGGGCCAATCCCCGACT
*** * * ** ** * * * * * * *
15436000 TATGCATTTTGCCTCTTCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
64 TGCACATTATGCCTCTCCGGCCGACTCAGCACCCACACGCCCATTTCATGGGTTGACTTAGGCAT
*
15436065 ACGGAGTCCATT-CCATGTCTAAGC
129 ACGGAGTTCATTCCCA-GTCTAAGC
15436089 ATATGGAGTT
Statistics
Matches: 249, Mismatches: 54, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 40 0.16
159 207 0.83
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGCCAACAGGATCGGCAGCACGCAGGGGTGACCGGGCCAATCCCCGACTTG
CACATTATGCCTCTCCGGCCGACTCAGCACCCACACGCCCATTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCCCCAGT
Found at i:15436398 original size:13 final size:13
Alignment explanation
Indices: 15436380--15436404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15436370 GTGCATTATG
15436380 CCTCTCCGATCGA
1 CCTCTCCGATCGA
15436393 CCTCTCCGATCG
1 CCTCTCCGATCG
15436405 GCTAAGCGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.16, T:0.24
Consensus pattern (13 bp):
CCTCTCCGATCGA
Found at i:15436473 original size:26 final size:26
Alignment explanation
Indices: 15436443--15436495 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15436433 GTTGACTTAG
15436443 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
15436469 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15436495 G
1 G
15436496 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15436778 original size:159 final size:158
Alignment explanation
Indices: 15436533--15437125 Score: 421
Period size: 159 Copynumber: 3.8 Consensus size: 158
15436523 CAGGATCGAC
* * * ** ****
15436533 AGCATGCAGGGGGACCGGGCCGATTCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGTGGGCC
1 AGCATGCAGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGAATGACCACC
* * *
15436598 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
66 CACACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
15436663 ACTGAGGGTTATGGTAGCGAGATCGAAA
131 ACTGAGGGTTATGGTAGCGAGATCGAAA
* ** *
15436691 AGCATGCAGGGGGGGCCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGAATGACCAC
1 AGCATGCA-GGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGAATGACCAC
* * * * * *
15436756 CCACACGCCTGTTCCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCTCTAGCCG
65 CCACACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * **
15436821 GACTGAGGGTTGTGGTAGCGGGATCG-GC
130 GACTGAGGGTTATGGTAGCGAGATCGAAA
* * * * * ** * * * * **
15436849 AGTATGCAAAGGTGGACCGGGCCGATCCCCGGCTTGCTTATTATGCCTCTCCGGCC-AGCTCAGT
1 AGCATGC--AGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGA-ATGACC
* ** * * *** * * * ** *
15436913 GCCTGCACGCTCATTTTTTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTGTAAGATCGA-
63 ACCCACACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
* * * * *
15436976 CCGGACTGAGGGTTGTAGCAGC-AGGATCG-AC
127 CCAGACTGAGGGTTATGGTAGCGA-GATCGAAA
* * * * * * * *
15437007 AGCACG-AGGGGGACCGAGTCAATCCCCGACTTGCGCATTCTACCTCT-CGGCCGACTGAGCACC
1 AGCATGCAGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGAATGACCACC
** * * *
15437070 CGTACGCTCGTT-CGTGGGTTGGCTTAGGCATACGGACGTTCATTCCATGTCTAAGC
66 CACACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGA-GTTCATTCCATGTCTAAGC
15437126 ATATGGAGGT
Statistics
Matches: 345, Mismatches: 81, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
153 24 0.07
154 33 0.10
155 33 0.10
158 45 0.13
159 206 0.60
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCATGCAGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGAATGACCACC
CACACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACTGAGGGTTATGGTAGCGAGATCGAAA
Found at i:15438385 original size:26 final size:26
Alignment explanation
Indices: 15438356--15438408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15438346 GTTGGCTTAG
*
15438356 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
15438382 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
15438408 G
1 G
15438409 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:15439099 original size:26 final size:26
Alignment explanation
Indices: 15439063--15439114 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15439053 TTGACTTAGA
15439063 CATACAAAGTTCATCCCCAGTCTAAG
1 CATACAAAGTTCATCCCCAGTCTAAG
* *
15439089 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACAAAGTTCATCCCCAGTCTAAG
15439115 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
CATACAAAGTTCATCCCCAGTCTAAG
Found at i:15439396 original size:159 final size:157
Alignment explanation
Indices: 15439088--15439590 Score: 577
Period size: 159 Copynumber: 3.2 Consensus size: 157
15439078 CCCAGTCTAA
* * * *
15439088 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGAT
* * * * *
15439152 AGCACACAGAGGGGACCAGATCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCAC
65 AGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCT-CGGTCGGTTGAGCAC
*
15439217 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * * * *
15439246 GCATGGGGAGTTCATTCCATGTCTAA-ACCCCAG-TCAGACTGAGGGTTGTGGCAACGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGA--CCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGA
* * *
15439309 TAGCACGCAGAGGGGAATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGG-CTGGCTCAG
64 TAGCACGCAGAGGGG-ATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTC-GGTC-GGTTGAG
* * * *
15439373 CCCCCGCACGCTCATTTCGTGGGTTGACTTAG
126 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
15439405 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGAT
* * *
15439469 AGCACGTAGGTGGGGATCGGGTCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGTCAGTTGAGC
65 AGCACGCA-GAGGGGATCGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCT-CGGTCGGTTGAGC
15439533 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
127 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
15439564 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15439591 CATATGGAGT
Statistics
Matches: 284, Mismatches: 47, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
157 4 0.01
158 65 0.23
159 204 0.72
160 11 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCGGTCGGTTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15439594 original size:26 final size:26
Alignment explanation
Indices: 15439564--15439616 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15439554 GTTGGCTTAG
15439564 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15439590 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15439616 G
1 G
15439617 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15439946 original size:515 final size:502
Alignment explanation
Indices: 15438988--15439946 Score: 1197
Period size: 515 Copynumber: 1.9 Consensus size: 502
15438978 TACCACCCAC
* * * * **
15438988 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCCGGCTGAGCACCCACATGCTCGTTTTGTGAG
1 TCGATCCCCAGCTTGCGCATCCTGCCTCTCCGGCCAGCTGAGCACCCACACGCTCGTTTCATGAG
15439053 TTGACTTAGACATACAAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGACATACAAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* *
15439118 AGACCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGACCAGATCGATCCCCGA
131 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGACAAGATCGATCCCCGA
* * **
15439183 CTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
196 CTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
** * * * ** **
15439248 ATGGGGAGTTCATTCCATGTCTAAACCCCAGTCAGACTGAGGGTTGTGGCAACGGGACCGGTAGC
261 ATACGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTGACAACAAGACCGACAGC
* * * * * *
15439313 ACGCAGAGGGGAATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGCTGGCTCAGCCCCC
326 ACACAGAAGGGAACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGCCGACACAGCCCCC
* *
15439378 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGA
391 GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAGACCGGA
15439443 CCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGTGGGGATCGGG
456 CCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGTGGGGATCGGG
* * * * *
15439490 TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCAGTTGAGCACCCGCACGCTCGTTTCATGGG
1 TCGATCCCCAGCTTGCGCATCCTGCCTCTCCGGCCAGCTGAGCACCCACACGCTCGTTTCATGAG
* * ** * * *
15439555 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
66 TTGACTTAGACATACAAAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
15439619 CAGACCGGACCGAGGGTTGCAACAATAGGACCAGCAGCAGGATCGATAGCACACAG-GTAGGGAC
130 CAGACCGGACCGAGGGTTG---C-----G----GCAGCAGGATCGATAGCACACAGAG--GGGAC
* * * * * *
15439683 AAGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGACTGAGCACCCGTACGCTCGTTTCG
181 AAGATCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCA
* *
15439748 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGAC
246 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTGAC
* * * *
15439813 AGCAAGACCGACAGCACACAGATAGGG-ACCGGG-CTGATCCCCGGCTTGTGCATTATGCCTCTT
311 AACAAGACCGACAGCACACAGA-AGGGAACCGGGTC-GATCCCCGACTTGCGCATTATGCCTCTC
* * * * ** *
15439876 TGGCCGACAGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTGATCCCCAG
374 TGGCCGACACAGCCCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAG
15439941 TCTAAG
439 TCTAAG
15439947 CATACGGAGT
Statistics
Matches: 380, Mismatches: 60, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
501 3 0.01
502 125 0.33
505 1 0.00
510 1 0.00
513 1 0.00
514 24 0.06
515 222 0.58
516 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (502 bp):
TCGATCCCCAGCTTGCGCATCCTGCCTCTCCGGCCAGCTGAGCACCCACACGCTCGTTTCATGAG
TTGACTTAGACATACAAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGACAAGATCGATCCCCGA
CTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTGACAACAAGACCGACAGC
ACACAGAAGGGAACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGCCGACACAGCCCCC
GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGTGGGGATCGGG
Found at i:15439956 original size:26 final size:26
Alignment explanation
Indices: 15439920--15439972 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15439910 GTTAACTTAG
* *
15439920 GCATATGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15439946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15439972 G
1 G
15439973 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15439982 original size:356 final size:343
Alignment explanation
Indices: 15439329--15440153 Score: 937
Period size: 356 Copynumber: 2.4 Consensus size: 343
15439319 AGGGGAATCG
* * * * *
15439329 GGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGCTGGCTCAGCCCCCGCACGCTCATTTCGTG
1 GGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
* * ** *
15439394 GGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGC
66 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGAC
* * ** * * * *
15439457 AGCAGGATCGACAGCACGTAGGTGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCG
129 AGCAAGACCGACAGCACACAGATAGGGACCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCG
* ** ** *
15439522 GTCAGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
194 GCCAGCAGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCATGTC
*
15439587 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAATAGGACCA
259 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG---C-----G----
*
15439652 GCAGCAGGATCGATAGCACACA-GGTAGGGACAA
312 GCAGCAGGATCGACAGCACACAGGGT--GGACAA
* * *
15439685 GGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGACTGAGCACCCGTACGCTCGTTTCGTG
1 GGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
15439750 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAG
* * **
15439815 CAAGACCGACAGCACACAGATAGGGACCGGG-CTGATCCCCGGCTTGTGCATTATGCCTCTTTGG
131 CAAGACCGACAGCACACAGATAGGGACCGGGTC-GATCCCCAGCTTGCGCATTATGCCTCTCCGG
* * * * *
15439879 CC-GACAGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTGATCCCCA-GT
195 CCAG-CAGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCAT-CCCATGT
*
15439942 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC
258 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* **
15440007 GACAGCACGCAGGGTGGACCG
323 GACAGCACACAGGGTGGACAA
* * ** * * * *
15440028 GGTCTAT-CCCTAGCTCACACATTCTGCCTCTCTGGTCGGTTGAGCACCCGCACGCCCGTTTCGT
1 GGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGT
* *
15440092 GGGTTGGCTTAGGCATAGGGAGTTCATTCCAAT-TCTATGCCCCAGCCGGACCGAGGGTTGTG
65 GGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
15440154 GCAGTGGGAC
Statistics
Matches: 406, Mismatches: 55, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
342 4 0.01
343 109 0.27
344 21 0.05
345 3 0.01
348 1 0.00
353 1 0.00
355 5 0.01
356 256 0.63
357 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (343 bp):
GGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAG
CAAGACCGACAGCACACAGATAGGGACCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGC
CAGCAGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCATGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACACAGGGTGGACAA
Found at i:15440254 original size:26 final size:26
Alignment explanation
Indices: 15440218--15440270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15440208 GTTAACTTAG
*
15440218 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15440244 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15440270 G
1 G
15440271 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15440704 original size:158 final size:156
Alignment explanation
Indices: 15440244--15440744 Score: 576
Period size: 159 Copynumber: 3.2 Consensus size: 156
15440234 CCCAGTCTAA
* * * *
15440244 GCATACGGAGTTCATTCCCA-GTGTAAGATCGGATCAGACCAAGGGTTGTGACAGCAGGATCGAC
1 GCATACGGAGTTCATT--CATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
15440308 AGCATGCA-GGGGGACCCGACCGATTCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTTAGCAC
64 AGCACGTAGGGGGGACCCGGCCGA-TCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGC
* *
15440372 CCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
15440401 GCATAGGGAGTTCAGTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCA-TTCATGTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
15440465 AGCACATAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGGG
64 AGCACGTAG-GGGGGACCCGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCG
* * *
15440530 CCCGCATGCTCGTTTCGTGGGTTGACTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
15440560 GCATACGGAGTTCATTCATAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCAT-GTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
15440625 GCACGTAGGGGGGACCTGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
65 GCACGTAGGGGGGACCCGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCC
*
15440690 CACACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
15440718 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATT-CATGTCTAAG
15440745 CATATGGAGT
Statistics
Matches: 282, Mismatches: 52, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 50 0.18
158 105 0.37
159 125 0.44
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGGACCCGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15440754 original size:26 final size:26
Alignment explanation
Indices: 15440718--15440770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15440708 GTTGGCTTAG
15440718 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15440744 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15440770 G
1 G
15440771 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15441933 original size:159 final size:156
Alignment explanation
Indices: 15441469--15441966 Score: 511
Period size: 158 Copynumber: 3.1 Consensus size: 156
15441459 GTCTAAGCAC
* * * *
15441469 ACGGAGTTCATTCC-TAATCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCGACAGCA
1 ACGGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGTGACAGTAGGATCGACAGCA
* * * ** * **
15441533 CACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCGTTTTGCCTCTTTGGTCGGCTGAGCAACCAC
65 CACAGGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGAT-GGCTGAGCGCCCAC
*
15441598 ATGC-CTGTTTCGTGGGTTGGCTTAGGCAT
128 ACGCTC-GTTTCGTGGGTTGGCTTAGGCAT
* * ** * * *
15441627 AGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATCGGCAGCA
1 ACGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACCGAGGGTTGTGACAGTAGGATCGACAGCA
* * * * * *
15441691 CACAGAGGGGATCGGGTCGGTCCCCGGCTTACGCATTATGCCTCTCCAGCTGGCTCAGTGCCCAC
65 CACAGGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCC-GATGGCTGAGCGCCCAC
*
15441756 ACGCTCGTTTCGTGGGTTGACTTAGGCAT
128 ACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * * *
15441785 ACGGAGTTCATTCCCA-GTCTAAGATTGGACCAAACC-ATGGGTTGTGATAGTAGGATCGATAGC
1 ACGGAGTTCATT-CCATGTCTAAGATCGGACCAGACCGA-GGGTTGTGACAGTAGGATCGACAGC
* * *
15441848 ACGCAGGGGGGGAGCGGGTCGATCCCCGGCTTGCGCATTCTGTCTCTCCGATAGGCTGAGCGCCC
64 ACACA-GGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGAT-GGCTGAGCGCCC
* * *
15441913 GCACGCTCATTTCATGGGTTGGCTTAGGCAT
126 ACACGCTCGTTTCGTGGGTTGGCTTAGGCAT
*
15441944 ACAGAGTTCATTCCATGTCTAAG
1 ACGGAGTTCATTCCATGTCTAAG
15441967 CATACGGAGT
Statistics
Matches: 277, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 173 0.62
159 101 0.36
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
ACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGTAGGATCGACAGCAC
ACAGGGGGGACGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATGGCTGAGCGCCCACACG
CTCGTTTCGTGGGTTGGCTTAGGCAT
Found at i:15441970 original size:26 final size:26
Alignment explanation
Indices: 15441940--15441992 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15441930 GTTGGCTTAG
15441940 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15441966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15441992 G
1 G
15441993 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15442769 original size:26 final size:26
Alignment explanation
Indices: 15442740--15442792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15442730 GTTGACTTAG
15442740 GCATACGGAGTTAATCCCCAATCTAA
1 GCATACGGAGTTAATCCCCAATCTAA
* * *
15442766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAATCTAA
15442792 G
1 G
15442793 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAATCTAA
Found at i:15443054 original size:158 final size:158
Alignment explanation
Indices: 15442865--15443268 Score: 447
Period size: 158 Copynumber: 2.5 Consensus size: 158
15442855 CCTTAGCTCG
* * * * *
15442865 CGCATTCTGCCTCTCCAGTCGTCTGAGTGCCCTCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCAGT-GGCTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATAC
* * * *
15442930 GGAGTTCATTCCATGTCTAAGCCCC-AGCCAGACCGA-GGGTTGTGGCAATGGGATCGACAGCAC
65 GGAGTTCATTCCATGTCTAAGCCCCGA-CCA-AACAATGGGTTGTGACAATAGGATCGACAGCAC
* * *
15442993 ACA-GAGGGGATCGGGTCGGTCCCCGGCTTA
128 ACAGGAGGGGAGCGGGTCGATCCCCGACTTA
* * *
15443023 CGCATTATGCCTCTCCAGCTGGCTCAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCCAG-TGGCTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATAC
* *** * * * *
15443088 GAAGTTCATTCCCA-GTCTAAGATTCGACCAAACAATGGGTTGTGATAGTAGGATCGATAGCACG
65 GGAGTTCATT-CCATGTCTAAGCCCCGACCAAACAATGGGTTGTGACAATAGGATCGACAGCACA
* * * *
15443152 TAGGGGGGGAGCGGGTCGATCCTCGACTTG
129 CAGGAGGGGAGCGGGTCGATCCCCGACTTA
* * * *
15443182 CGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCC-AGTGGCTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATAC
15443247 GGAGTTCATTCCATGTCTAAGC
65 GGAGTTCATTCCATGTCTAAGC
15443269 ATACGGAGTT
Statistics
Matches: 203, Mismatches: 36, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 101 0.50
159 98 0.48
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
CGCATTCTGCCTCTCCAGTGGCTGAGTGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCGACCAAACAATGGGTTGTGACAATAGGATCGACAGCACACA
GGAGGGGAGCGGGTCGATCCCCGACTTA
Found at i:15443291 original size:26 final size:26
Alignment explanation
Indices: 15443241--15443293 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15443231 GTTGGCTTAG
*
15443241 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15443267 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15443293 G
1 G
15443294 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15443431 original size:26 final size:26
Alignment explanation
Indices: 15443401--15443453 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15443391 GTTGGTTTTG
*
15443401 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
15443427 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15443453 G
1 G
15443454 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15444070 original size:26 final size:26
Alignment explanation
Indices: 15444041--15444093 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15444031 GTTGACTTAG
15444041 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
15444067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
15444093 G
1 G
15444094 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:15444547 original size:158 final size:157
Alignment explanation
Indices: 15444064--15444568 Score: 545
Period size: 158 Copynumber: 3.2 Consensus size: 157
15444054 ATCCCCAGTC
15444064 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCAGAC-AGGA-TCGAGGGTTGCGACAGCAGGA
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGATCAGACTA-GACT-GAGGGTTGCGACAGCAGGA
* * * *
15444126 TCGATAGCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCAGTCGACTG
63 TCGACAGCACGCAGGGGGGACCGGGCCGATCCTGA-CTTGCGCATTCTGCCTCTCCAGTAGGCTG
* *
15444191 AGTGCCCTCACGCCCGTTTCATGGGTTGGCT
127 AGTGCCCGCACGCTCGTTTCATGGGTTGGCT
* * ** * * * *
15444222 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACTAGACCGAGGGTTGTGGCAGCAGGACC
1 TAAGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTAGACTGAGGGTTGCGACAGCAGGATC
* * * * * * * * *
15444286 GGCAGCATGTAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCA-GCTC
65 GACAGCACGCAG-GGGGGACCGGGCCGAT-CCTGACTTGCGCATTCTGCCTCTCCAG-TAGGCTG
* * * * *
15444350 AGTGCCCGAACGCTCATTCCGTGGGTTGACT
127 AGTGCCCGCACGCTCGTTTCATGGGTTGGCT
* * *
15444381 TAGGCATACGGAGTTCATTCC-TAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTAGGATC
1 TAAGCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTAGACTGAGGGTTGCGACAGCAGGATC
* * * * *
15444445 GACAGCACGCAGGGGGGACCGGGCCGGTCTCTGACTTACGCATTCTGCCTCCCCAGTAGGTTGAA
65 GACAGCACGCAGGGGGGACCGGGCCGATC-CTGACTTGCGCATTCTGCCTCTCCAGTAGGCTGAG
*
15444510 CGCCCGCACGCTCGTTTCATGGGTTGGCT
129 TGCCCGCACGCTCGTTTCATGGGTTGGCT
15444539 TAAGCATACGGAGTTCATTCCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCATGTCTAAG
15444569 CATATGGAGT
Statistics
Matches: 277, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 144 0.52
159 125 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGATCAGACTAGACTGAGGGTTGCGACAGCAGGATCG
ACAGCACGCAGGGGGGACCGGGCCGATCCTGACTTGCGCATTCTGCCTCTCCAGTAGGCTGAGTG
CCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:15444628 original size:12 final size:12
Alignment explanation
Indices: 15444611--15444635 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15444601 TTGCAACAGT
15444611 AGGACCAGCAGC
1 AGGACCAGCAGC
15444623 AGGACCAGCAGC
1 AGGACCAGCAGC
15444635 A
1 A
15444636 CGCAGGGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.32, G:0.32, T:0.00
Consensus pattern (12 bp):
AGGACCAGCAGC
Found at i:15445643 original size:26 final size:26
Alignment explanation
Indices: 15445607--15445659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15445597 GTTGACTTAG
15445607 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15445633 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15445659 G
1 G
15445660 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15446026 original size:159 final size:155
Alignment explanation
Indices: 15445633--15446032 Score: 343
Period size: 159 Copynumber: 2.6 Consensus size: 155
15445623 CCCAGTCTAA
** * *
15445633 GCATACAGAGTTCATTCCCT-GTCTAAGATCAGACTGGACCGATGGTTACGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAG-AGGATCGAT
* * *
15445697 AGCACGTAGG-GGGACC-AGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGCCCG
64 AGCACGCAGGAGGGACCGAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGCCCG
* *
15445760 CTACGCCCATTTCGTGGGTTGCCTCAG
129 CAACGCCCATTTCGTGGGTTGACTCAG
** ** * * * ** * * *
15445787 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCTAGTCGA-ACCGAGTGTTGTGGCAGCGG-TACCA
1 GCATACAGAGTTCATTCCTA-GTCTAAGATC-AGACCAGACCGAGGGTTACGGTAGAGGAT-CGA
** * * *
15445849 GTAGCATACAGAGGGGGACCGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCG-GCTGGCTC
63 -TAGCACGCAG-GAGGGACCGAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATC-GG--C
* * *
15445912 AGTGCCCG-AATGCTCATTTCGTGGGTTGACTTAG
123 --TGCCCGCAACGCCCATTTCGTGGGTTGACTCAG
15445946 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAG-AGGATCGATA
15446011 GCACGCAGGAAGGGACCG-GGCC
65 GCACGCAGG-AGGGACCGAGGCC
15446033 TGTCCCAGGC
Statistics
Matches: 185, Mismatches: 42, Indels: 33
0.71 0.16 0.13
Matches are distributed among these distances:
152 1 0.01
153 6 0.03
154 40 0.22
155 5 0.03
156 38 0.21
157 1 0.01
158 6 0.03
159 76 0.41
160 11 0.06
161 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGAGGATCGATAG
CACGCAGGAGGGACCGAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGCCCGCA
ACGCCCATTTCGTGGGTTGACTCAG
Found at i:15446362 original size:25 final size:26
Alignment explanation
Indices: 15446312--15446363 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15446302 GTTGACTTAG
*
15446312 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15446338 GCATACAGAGTTCAT-CCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15446363 G
1 G
15446364 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15446645 original size:159 final size:160
Alignment explanation
Indices: 15446378--15447022 Score: 556
Period size: 159 Copynumber: 3.9 Consensus size: 160
15446368 GACCAGACTG
* * * * * *
15446378 AGGGTTGCGGTAGCAGGATCGACAGCA--CGCAGGGGGGACC-AGGTCGATCCTCGGCTTGCGCA
1 AGGGTTGTGGTAGCAGGACCGACAGCATGCACAAGGGGGACCGA-GCCGATCCCCGGCTTGCGCA
* * * * * * *
15446440 TTCTACCTCTCCGGTCGGCTGAGCACCCACATGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGA
65 TTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGA
**
15446504 GTTCATTCCATGTCTAAGCCCCAGTTGGACCA
129 GTTCATTCCATGTCTAAGCCCCAGCCGGACCA
15446536 AGGGTTGTGGTAGC-GAGACCGACAGCATGCA-AAGGGGGACCGAGCCGATCCCCGGCTTGCGCA
1 AGGGTTGTGGTAGCAG-GACCGACAGCATGCACAAGGGGGACCGAGCCGATCCCCGGCTTGCGCA
*
15446599 TTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
65 TTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
*
15446664 TTCATTCCATGTCTAAGCCCCAACCGGACCA
130 TTCATTCCATGTCTAAGCCCCAGCCGGACCA
* * * * **
15446695 ATGGTTGTGGTAGCAAGACCGGTAATAGGATCGATCGCACGTAGAGGGGGACCGGGCTAATCCCC
1 AGGGTTGTGGTAGCAGGACC-G--ACA-G--C-AT-GCAC--A-AGGGGGACCGAGCCGATCCCC
* * * * *
15446760 AGCTTGTGCATTATGCCTCTCCGATCGGCCTCTTCGATCGACCGAGCGCCCGTACCCTCGTTTCG
55 GGCTTGCGCATTCTGCCTCTCCGATCGG----TT-GA--G--C-A---CCCGCACGCTCGTTTCG
* * ** *
15446825 TGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAG-ATCAGACCGAACCA
107 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCGGACCA
* * * * * * **
15446879 A-GGTTGTGGCAGCAGGATCGACAACA--CACAGGGGGGACCGGGCCGGTCCCCGGCTTGAACAT
1 AGGGTTGTGGTAGCAGGACCGACAGCATGCACAAGGGGGACCGAGCCGATCCCCGGCTTGCGCAT
* * *
15446941 TCTGCCTCTTCGACCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
15447006 TCATTCCATGTCTAAGC
131 TCATTCCATGTCTAAGC
15447023 ATACGGAGTT
Statistics
Matches: 399, Mismatches: 53, Indels: 70
0.76 0.10 0.13
Matches are distributed among these distances:
157 52 0.13
158 24 0.06
159 129 0.32
160 5 0.01
161 1 0.00
162 2 0.01
163 2 0.01
165 3 0.01
166 4 0.01
167 3 0.01
170 39 0.10
171 43 0.11
173 3 0.01
175 2 0.01
176 3 0.01
177 1 0.00
178 1 0.00
180 3 0.01
181 1 0.00
182 1 0.00
183 18 0.05
184 59 0.15
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (160 bp):
AGGGTTGTGGTAGCAGGACCGACAGCATGCACAAGGGGGACCGAGCCGATCCCCGGCTTGCGCAT
TCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCGGACCA
Found at i:15447031 original size:26 final size:26
Alignment explanation
Indices: 15446995--15447047 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15446985 GTTGGCTTAG
15446995 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15447021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15447047 G
1 G
15447048 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15447425 original size:26 final size:26
Alignment explanation
Indices: 15447373--15447425 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15447363 GTCAACTTAG
* * *
15447373 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
*
15447399 GCATACAGAGTTCATACCCAATTTAA
1 GCATACAGAGTTCATACCCAATCTAA
15447425 G
1 G
15447426 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:15447914 original size:26 final size:26
Alignment explanation
Indices: 15447862--15447914 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15447852 GTTGGCTTAG
*
15447862 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15447888 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15447914 G
1 G
15447915 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15449173 original size:26 final size:26
Alignment explanation
Indices: 15449137--15449189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15449127 GTTGACTTAG
15449137 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
15449163 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15449189 G
1 G
15449190 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15449457 original size:159 final size:158
Alignment explanation
Indices: 15449215--15449507 Score: 379
Period size: 159 Copynumber: 1.8 Consensus size: 158
15449205 AGGTTACGGC
** *
15449215 AGCAGGATCGGCAACACGCAGGGGGGACTGGGCCGATCCCCGACTTACGCATTCTGCCTCCCCGG
1 AGCAGGATCGGCAACACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCCCCGA
* * *
15449280 TAGGCTGAGTGCCCGCACGCCCATTCCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
66 TAGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCT
15449345 AAGCCCTAGCCAAACCGAGGGTTGTGGT
131 AAGCCCTAGCCAAACCGAGGGTTGTGGT
* * * * * * *
15449373 AGCAGGATCGGCATCATGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGGCAACACGCAG-GGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCCCCG
* ** * * * * * *
15449438 ATCGGCTGAGCGCCCGCACGGTCGTTTCATGTGTTGTCTTAGGCATACGGAGTTCGTTCCATGTC
65 ATAGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTC
15449503 TAAGC
130 TAAGC
15449508 ATACAGAGTT
Statistics
Matches: 112, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
158 18 0.16
159 94 0.84
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
AGCAGGATCGGCAACACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCCCCGA
TAGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCT
AAGCCCTAGCCAAACCGAGGGTTGTGGT
Found at i:15449510 original size:26 final size:25
Alignment explanation
Indices: 15449480--15449531 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15449470 GTTGTCTTAG
* * *
15449480 GCATACGGAGTTCGTTCCATGTCTAA
1 GCATACAGAGTTCATT-CAAGTCTAA
15449506 GCATACAGAGTTCATTCAAGTCTAA
1 GCATACAGAGTTCATTCAAGTCTAA
15449531 G
1 G
15449532 AGTTTGAGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCAAGTCTAA
Found at i:15450729 original size:26 final size:26
Alignment explanation
Indices: 15450700--15450752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15450690 GTTAGCTTAG
15450700 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15450726 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15450752 G
1 G
15450753 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15451115 original size:26 final size:26
Alignment explanation
Indices: 15451079--15451131 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15451069 GTTGACTTAG
15451079 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
15451105 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15451131 G
1 G
15451132 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15457787 original size:26 final size:26
Alignment explanation
Indices: 15457750--15457802 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15457740 GTTGACTTAG
*
15457750 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15457776 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15457802 G
1 G
15457803 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15458071 original size:159 final size:159
Alignment explanation
Indices: 15457834--15458273 Score: 506
Period size: 159 Copynumber: 2.8 Consensus size: 159
15457824 CAGGATCGGT
* * * * * *
15457834 AGCACACAG-GGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCTGACCGGCTGAACA
1 AGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * * *
15457898 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-C
66 CCCACATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC-AGAC
* ** *
15457962 CGGACCGAGGGTTGTGGCAGCGGGACCGGC
130 CGGACCGAGGGTTGCGGCAGCAAGACCGAC
* * * * * * *
15457992 AGCATGCAGAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGTG
1 AGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * ** *
15458057 CCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCGGACC
66 CCCACATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGACC
*
15458122 GGACCGAGGGTTGCGGCAGCAAGATCGAC
131 GGACCGAGGGTTGCGGCAGCAAGACCGAC
* * * * * *
15458151 AGCACGCAGGGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
1 AGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
15458216 CCCCCATGCTCGTTTTGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGC
66 CCCACATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
15458274 ATACGGAGTT
Statistics
Matches: 231, Mismatches: 49, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
158 8 0.03
159 223 0.97
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
CCCACATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGACC
GGACCGAGGGTTGCGGCAGCAAGACCGAC
Found at i:15458283 original size:26 final size:26
Alignment explanation
Indices: 15458247--15458298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15458237 TTGGCTTAGC
15458247 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
15458273 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
15458299 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:15458497 original size:196 final size:196
Alignment explanation
Indices: 15458137--15458722 Score: 818
Period size: 196 Copynumber: 3.0 Consensus size: 196
15458127 GAGGGTTGCG
* * * *
15458137 GCAGCAAGATCGACAGCACGCAGGGGGGGACCAGGTCGATCCCC-GACTTACGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCA-GGGGGGATCAGGCCGATCCCCAG-CTTGCGCATTCTGCCTCT
* * * *
15458201 CCGACCGGCTGAGCGCCCCCATGCTCGTTTTGTGGGTTGGCTTAGCCATACGAAGTTCATTCCAT
64 CCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCAT
* * *
15458266 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCAGGA
129 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGA
15458331 CTA
194 CTA
*
15458334 GCAGCAGGATCGGCAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC
* * *
15458399 GACCGACTGAGCGCCCGCACGCTTATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTGCATGT
66 GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGT
* * * *
15458464 CTAAGCATACGAAGTTCATTCTCAGTGTAAGATCCGACCGGATCGAGGGTTGCAGCAGCAGGACT
131 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGACT
15458529 A
196 A
* * * * *
15458530 GCAGCAGGATCGATAGCACGTAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC
* * * * * * *
15458595 GGCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
66 GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCAT-TCCATG
* *
15458659 TCTAAGCATAC-AGAGTGCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGA
130 TCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGA
15458723 TCGATAGCAT
Statistics
Matches: 346, Mismatches: 40, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
195 1 0.00
196 322 0.93
197 23 0.07
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (196 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC
GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGT
CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGACT
A
Found at i:15458674 original size:26 final size:26
Alignment explanation
Indices: 15458638--15458690 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15458628 GTTGACTTAG
* *
15458638 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
*
15458664 GCATACAGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
15458690 G
1 G
15458691 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAGTCTAA
Found at i:15459169 original size:26 final size:26
Alignment explanation
Indices: 15459139--15459191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15459129 GTTGGCTTAG
*
15459139 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
*
15459165 GCATACGAAGTTCATTCCCCGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
15459191 G
1 G
15459192 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACGTCTAA
Found at i:15459807 original size:159 final size:159
Alignment explanation
Indices: 15459509--15459925 Score: 518
Period size: 159 Copynumber: 2.6 Consensus size: 159
15459499 TTCAAAGGCC
* *
15459509 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCGTTTCATGGTTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTT
* * * * * *
15459574 GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG-CCCCAGCC-GAACCGAGGGTTGTGGCAGCG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCGA-CCAG-ACCGAGGGTTGCGGCAGCA
* *
15459637 GGACCGGCAGCACGCAGAGGGGGACCGGGCT
129 GGATCGACAGCACGCAGAGGGGGACCGGGCT
* * * *
15459668 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGTACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTT
* * * *
15459733 GACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAG
66 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCCGACCAGACCGAGGGTTGCGGCAGCAG
* *
15459797 GATCGACAGCACGCA-AGGGTGGACCGAGCC
130 GATCGACAGCACGCAGAGGG-GGACCGGGCT
* * * * * * * *
15459827 GATCCCTGGCTGGCACATTCTGCCTCTCCGGCTGGTTGAGCGCCCACACGCTCATTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTT
15459892 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15459926 CATATGGAGT
Statistics
Matches: 219, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
158 7 0.03
159 206 0.94
160 6 0.03
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.22
Consensus pattern (159 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCGACCAGACCGAGGGTTGCGGCAGCAGG
ATCGACAGCACGCAGAGGGGGACCGGGCT
Found at i:15459929 original size:26 final size:26
Alignment explanation
Indices: 15459899--15459951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15459889 GTTGGCTTAG
15459899 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
15459925 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15459951 G
1 G
15459952 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15460092 original size:184 final size:185
Alignment explanation
Indices: 15459747--15460110 Score: 532
Period size: 184 Copynumber: 2.0 Consensus size: 185
15459737 TAGGCATACA
* * * *
15459747 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * **
15459812 AGGGTGGACCGAGCCGATCCCTGGCTGGCACATTCTGCCTCTCCGGCTGGTTGAGCGCCCACACG
66 AGGGGGGAACGAGCCGATCCCCGACTGGCACATTCTACCTCTCCGGCCAGTTGAGCGCCCACACG
15459877 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
131 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
* *
15459932 GAGTTCATTCCTAGTCTAAGATCGAACCAAACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGC-
1 GAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCA
* * *
15459996 AGGGGGGAACGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGTTGAGCGCCCACACG
66 AGGGGGGAACGAGCCGATCCCCGACTGGCACATTCTACCTCTCCGGCCAGTTGAGCGCCCACACG
* * * **
15460061 CTCGTTTCGTTGGTTGGCTTAGGTGTACGGAGTTCATTCCATGTCTAAGC
131 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15460111 CCTAGCCGGA
Statistics
Matches: 158, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
184 100 0.63
185 58 0.37
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (185 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCA
AGGGGGGAACGAGCCGATCCCCGACTGGCACATTCTACCTCTCCGGCCAGTTGAGCGCCCACACG
CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
Found at i:15460223 original size:159 final size:158
Alignment explanation
Indices: 15459971--15460427 Score: 508
Period size: 159 Copynumber: 2.9 Consensus size: 158
15459961 AACCGAAGGT
* * * *
15459971 TGCGGCAGCAGGATCGGCAGCACGCAGGGGGGAACGGGCCGATCCCCGACTTGCGCATTCTACCT
1 TGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGACGATCCCCGACTTGCGCATTCTGCCT
* * * * * **
15460036 CTCCGGCCAGTTGAGCGCCCACACGCTCGTTTCGTTGGTTGGCTTAGGTGTACGGAGTTCATTCC
66 CTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
15460101 ATGTCTAAGCCCTAG-CCGGACCAAGGGA
131 ATGTCTAAGCCC-AGACCGGACCAAGGGA
* * * * * *
15460129 TGTGGCAGCGGGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCC-AGCTTGCGCATTATGC
1 TGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGACGATCCCCGA-CTTGCGCATTCTGC
* * * *
15460193 CTCTCCGGTCGGCTCAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
64 CTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
** * *
15460258 CCCA-GTCTAAGATCAGACCGGACCGAGGGT
129 -CCATGTCTAAGCCCAGACCGGACCAAGGGA
* * * * * *
15460288 TGCGGTAGCAGGATCGACAGCACGCAGGAGGGACC-GGACTGATTCCTGATTTACGCATTCTGCC
1 TGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGAC-GATCCCCGACTTGCGCATTCTGCC
* * * ** *
15460352 TCTTCGACCGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTATCCATACGAAGTTCATTC
65 TCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
15460417 CATGTCTAAGC
130 CATGTCTAAGC
15460428 ATACGAAGTT
Statistics
Matches: 245, Mismatches: 47, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 6 0.02
158 110 0.45
159 126 0.51
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
TGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGACGATCCCCGACTTGCGCATTCTGCCT
CTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
ATGTCTAAGCCCAGACCGGACCAAGGGA
Found at i:15460390 original size:158 final size:157
Alignment explanation
Indices: 15459925--15460426 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 157
15459915 CCATGTCTAA
* ** * *
15459925 GCATATGGAGTTCATTCC-TAGTCTAAGATC-GAACCAAACCGAAGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
15459988 CAGCACGCAGGGGGGAACGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGTTGAGCG
64 CAGCACGCAGGGGGG-ACCGGCTGATTCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTG
* *
15460053 CCCACACGCTCGTTTCGTTGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** * * * * *
15460083 GTGTACGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCAAGGGATGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
15460147 AGCACACAGAGGGGGACCGGGTCGA-TCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGT
65 AGCACGCAG-GGGGGACCGGCT-GATTCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT
* *
15460211 GCCCGCATGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15460242 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
15460306 AGCACGCAGGAGGGACCGGACTGATTCCTGATTTACGCATTCTGCCTCTTCGACCGGCTGAGTGC
65 AGCACGCAGGGGGGACCGG-CTGATTCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGC
* *
15460371 CCGCACGCTCGTTTTGTGGGTTGGCTTAT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
15460400 CCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15460427 CATACGAAGT
Statistics
Matches: 274, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 147 0.54
159 120 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGCTGATTCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15460437 original size:26 final size:26
Alignment explanation
Indices: 15460401--15460452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15460391 TTGGCTTATC
15460401 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
15460427 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
15460453 ATCAGATCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:15460626 original size:26 final size:26
Alignment explanation
Indices: 15460596--15460648 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15460586 TTTGACTTAG
*
15460596 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
* *
15460622 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
15460648 G
1 G
15460649 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAGTCTAA
Found at i:15460806 original size:184 final size:183
Alignment explanation
Indices: 15460242--15460807 Score: 589
Period size: 184 Copynumber: 3.0 Consensus size: 183
15460232 GTTGACTTAG
* **
15460242 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * ** * * *
15460307 GCACGCAGGAGGGACCGGACTGATTCCT-GATTTACGCATTCTGCCTCTTCGACCGGCTGAGTGC
66 GCATGCAGGAGGGACTGGGC-GA-TCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
** ** *
15460371 CCGCACGCTCGTTTTGTGGGTTGGCTTATCCATACGAAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
15460426 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCCGACCAAGGGTTGCGGTAGTAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC--------G---A-CA
* * * *
15460491 GCAGGATCGACAGCATGCAGGGGGGA-TCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGA
54 GCAGGATCGACAGCATGCAGGAGGGACT-GGG-CGATCCTCGGCTTGCGCATTCTGCCTCTCCGA
* * * * ** * * *
15460555 TCGGCTGAACACCCACACGCTCGTTTCATGATTTGACTTAGGCATACAGAGTTCATCCCCA-GTC
117 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
15460619 TAA
181 TAA
* * *
15460622 GCATACGGAGTGCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* *
15460687 GGATGCAGGTGGGACTGGGCAGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCATGCAGGAGGGACTGGGC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
15460752 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15460806 GC
1 GC
15460808 CCCTGTAGGA
Statistics
Matches: 308, Mismatches: 55, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
183 4 0.01
184 154 0.50
185 2 0.01
188 1 0.00
192 1 0.00
195 3 0.01
196 139 0.45
197 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCATGCAGGAGGGACTGGGCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15461831 original size:158 final size:157
Alignment explanation
Indices: 15461464--15461865 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 157
15461454 TCAGCTTGTG
* * * *
15461464 CATTCTGCCTCTCCAGCTAGCTGAGAGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATAGGG
1 CATTATGCCTCTCCAGCTGGCTGAGAGCCC-CACGCTCGTTTCATGGGTT-GCTTAGGCATACGG
* * ** *
15461529 AGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAG
64 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTAAGGCAGCAGGACCGACAGCACACAG
**
15461594 AGGGGGACCGAGTCGATCCCCGGCTTGTG
129 AGGGGGACCGAGTCGATCCCCGGCTTGCA
* * * * * * * *
15461623 CATTATGCCTC-CCCGATCGGCTCAGTGCCCCTACGCTCATTTCGTAGGTTGACTTAAGCATACG
1 CATTATGCCTCTCCAGCT-GGCTGAGAGCCCC-ACGCTCGTTTCATGGGTTG-CTTAGGCATACG
** * * * ** **
15461687 GAGTTCATTCTCA-GTCTAAG-ATCGGATCGGACCGAAGGTTAAGGCAGCAGGATTGACAGCATG
63 GAGTTCATTC-CATGTCTAAGCCCCAG-CCAGACCGAAGGTTAAGGCAGCAGGACCGACAGCACA
* *
15461750 CAG-GGGGGATCGGGTCGATCCCCGGCTTGCA
126 CAGAGGGGGACCGAGTCGATCCCCGGCTTGCA
* * * *
15461781 CATTTTGCCTCTCCGGCTGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAG
1 CATTATGCCTCTCCAGCTGGCTGAGAGCCC-CACGCTCGTTTCATGGGTT-GCTTAGGCATACGG
15461846 AGTTCATTCCATGTCTAAGC
64 AGTTCATTCCATGTCTAAGC
15461866 ATACGGAGTT
Statistics
Matches: 193, Mismatches: 40, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 94 0.49
159 95 0.49
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
CATTATGCCTCTCCAGCTGGCTGAGAGCCCCACGCTCGTTTCATGGGTTGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTAAGGCAGCAGGACCGACAGCACACAGAG
GGGGACCGAGTCGATCCCCGGCTTGCA
Found at i:15461868 original size:26 final size:26
Alignment explanation
Indices: 15461838--15461890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15461828 GTTGGCTTAG
15461838 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15461864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15461890 G
1 G
15461891 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15462763 original size:26 final size:26
Alignment explanation
Indices: 15462714--15462766 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15462704 GTTGGCTTAG
*
15462714 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTACATGTCTAA
15462740 GCATACGAAGTTCATTTACA-GTCTAA
1 GCATACGAAGTTCA-TTACATGTCTAA
15462766 G
1 G
15462767 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTACATGTCTAA
Found at i:15463125 original size:26 final size:26
Alignment explanation
Indices: 15463095--15463147 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15463085 GTAGACTTAG
15463095 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCAAGTCTAA
15463121 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15463147 G
1 G
15463148 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15463425 original size:882 final size:867
Alignment explanation
Indices: 15461444--15463650 Score: 2554
Period size: 882 Copynumber: 2.5 Consensus size: 867
15461434 AGATCTTCAA
* * * *
15461444 AGGCTGATCCTCAGCTTGTGCATTCTGCCTCTCCAGCTAGCTGAGAGCCCGCACGCCCGTTTC-A
1 AGGCCGATCC-CAGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGAGCCCGCACGCCCGTTTCGA
* * * *
15461508 TGGGTTCGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
64 -GGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAG-CCCAGCCGGACAGAGGGTTGTGGC
**
15461573 AGCGGGACCGACAGCACACAGAGGGGGACC-GAGTCGATCCCCGGCTTGTGCATTATGCCTCCCC
126 AGCGGGACCGACAGCACACAGAGGGGGACCGGA-TCGATCCCCGGCTTGTGCATTATGCCTCTTC
* * *
15461637 GATCGGCTCAGTGCCC-CTACGCTCATTTCGTAGGTTGACTTAAGCATACGGAGTTCATTCTCAG
190 GACCGGCTCA--GCCCAC-ACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG
* * *
15461701 TCTAAGATCGGA-TCGGACCGA-AGGTTAAGGCAGCAGGATTGACAGCATGCAGGGGGGATCGGG
252 TCTAAGATCGGACT-GGACCGAGA-GTT-AGGTAGCAGGATTGACAGCACGTAGGGGGGATCGGG
* * * * *
15461764 TCGATCCCCGGCTTGCACATTTTGCCTCTCCGGCTGGCTGAGCGCCCACACGCTCGTTTCATGGG
314 TCAATCCCCGGCTTGCACA-TTTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
15461829 TTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
378 TTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGAT
* * * *
15461893 CGGACCGAACTGAGGGTTGCGGTAGTAGGACCAACAGCAGGATCGACAGCACACAGGGGGGACCG
442 CAGACCGAACCGAGGGTTGCGGTAGCAAGACCAACAGCAGGATCGACAGCACACAGGGGGGACCG
* * * * * * *
15461958 GGTCGATCCCCGACTTGCGCATTCTACCTTTTCAGCCAGCTGAGTGCCTGCACGCTCGATTCGTG
507 AGCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGATTCGTG
* *
15462023 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGTAG
572 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAG
* * * * *
15462088 TAGGACCGACATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTACGCATC
637 CAGGACCGACATCGGCAACACGCAGAAGGGGACCGGGCCGATCCCCAGCTTGCGCATTACGCATC
* * ** * *
15462153 TCCGGCCAGCTTCTCCGGCTTACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAAGCATAC
702 TCCGACCAGCCTCTCCGGCAGACTGAGCGCCCGCACACTCGTTTCATGGGTAGACTTAAGCATAC
** * * *
15462218 GGAGTTCATCGGTAGTCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
767 GGAGTTCATCGCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGG
*
15462283 TTACGGTAGCAGGATCGGTAGCACGCAGGGGGGACC
832 TTACGGTAGCAGGATCGATAGCACGCAGGGGGGACC
* * * ** * *
15462319 AGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAAAGCCCGCACGTTCGTTTTGT
1 AGGCCGAT-CCCAGCTTGCGCATTCTGCCTCTCCG-GCGGCTGAGAGCCCGCACGCCCGTTTCGA
* * *
15462384 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCCGCAGTCGGACTGAGGGTTGTGGCA
64 GGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCC-CAGCCGGACAGAGGGTTGTGGCA
* ** * * ** ** * *
15462449 ACGGGACCGACAGCATGCAGAGAGGGACCGGGTCGATCGTCGATTTGTTCATTATGCCTATCTC-
127 GCGGGACCGACAGCACACAGAGGGGGACCGGATCGATCCCCGGCTTGTGCATTATGCCTCT-TCG
* *
15462513 ACCGGCTCAATGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
191 ACCGGCTC-A-GCCCACACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTC
* * ** *
15462578 TAAGATCGGACTGGATCGAGAGTTACGGTAGCAAGATTGACAAAACGTAGGGTGGGATCGGGCCA
254 TAAGATCGGACTGGACCGAGAGTTA-GGTAGCAGGATTGACAGCACGTAGGG-GGGATCGGGTCA
* * * * * *
15462643 ATCCTCGGTTTACACATTCTACCTCTTCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTG
317 ATCCCCGGCTTGCACATT-TGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
15462708 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTTACAGTCTAAGATCAGA
381 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGA
* * **
15462773 CCGGACCGAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCGGTAGCACACAGGCGGGGACCGAGC
446 CCGAACCGAGGGTTGCGGTAGCAAGACCAACAGCAGGATCGACAGCACACAGG-GGGGACCGAGC
* * * * * * * * *
15462838 CGATCCTCGGCTTACGTATTTTGCCTCTCC-GACCGGCTGAGCGCCCGTACGTTCGTTTCGTGGG
510 CGATCCCCGACTTACGCATTCTACCTCTCCAG-CCAGCTGAGCGCCCGCACGCTCGATTCGTGGG
*
15462902 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGC
574 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCAAGGGTTGTGGCAGC
* * * * *
15462966 AGGATCGACAGTGAGATTGGCAACACGCAGAAGGGGATCGGGCTGATCCCCAGCTTGCGCATTAT
638 AGGA-C--C---GACATCGGCAACACGCAGAAGGGGACCGGGCCGATCCCCAGCTTGCGCATTAC
* * * * * *
15463031 GCCTCTCCGACCGGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTTGTTTCATGGGTAGACTTAGG
697 GCATCTCCGACCAGCCTCTCCGGCAGACTGAGCGCCCGCACACTCGTTTCATGGGTAGACTTAAG
* * * *
15463096 CATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGATC
762 CATACGGAGTTCATCGCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACC
** *
15463161 GAGGGTTGTGG-AGCAGGATTGATAGCACGCAGGGGGGACC
827 GAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGACC
* *
15463201 -GAGTCGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGGGCCCGCACGCCCGTTTCG
1 AG-GCCGATCCCA-GCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGAGCCCGCACGCCCGTTTCG
*
15463265 AGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGTCCCAGCCGGACAGAGGGTTGTGGT
63 AGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAG-CCCAGCCGGACAGAGGGTTGTGGC
* * * * *
15463330 AGCGGGATCGGCAGCACACAAAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTTCG
126 AGCGGGACCGACAGCACACAGAGGGGGACCGGATCGATCCCCGGCTTGTGCATTATGCCTCTTCG
* * * * * * *
15463395 ACCAGCGCAGCACACGCATGGTCATTTCGTGGATTGACTTATA-CATACAGAGTTCATTCCCAGT
191 ACCGGCTCAGC-C-CACACGCTCATTTCGTGGGTTGACTTA-AGCATACGGAGTTCATTCCCAGT
* *** * * *
15463459 CTAAGATTGGACCAAACCGAGGGTT-GCTACTGCAGGATTGACAGCACGTAGGGGCAGATCGGGT
253 CTAAGATCGGACTGGACCGAGAGTTAGGTA--GCAGGATTGACAGCACGTAGGGG-GGATCGGGT
* *
15463523 CAATCCCCGGCTTGCGTA-ATTTGCCTC-TCTGGCCTGCTGAGCGCTCGCACGCTCGTTTCGTGG
315 CAATCCCCGGCTTGC--ACATTTGCCTCTTC-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * *
15463586 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAATCTAAGAT
377 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGAT
15463651 TTTGAGCCAT
Statistics
Matches: 1110, Mismatches: 184, Indels: 69
0.81 0.13 0.05
Matches are distributed among these distances:
874 3 0.00
875 247 0.22
876 178 0.16
877 120 0.11
878 1 0.00
880 6 0.01
881 14 0.01
882 373 0.34
883 167 0.15
884 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (867 bp):
AGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGAGCCCGCACGCCCGTTTCGAGG
GTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCAGCCGGACAGAGGGTTGTGGCAGCGG
GACCGACAGCACACAGAGGGGGACCGGATCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGG
CTCAGCCCACACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACTGGACCGAGAGTTAGGTAGCAGGATTGACAGCACGTAGGGGGGATCGGGTCAATCCCCGGC
TTGCACATTTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
ACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCGAACCGAG
GGTTGCGGTAGCAAGACCAACAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGAC
TTACGCATTCTACCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCA
TACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAGCAGGACCGACATCG
GCAACACGCAGAAGGGGACCGGGCCGATCCCCAGCTTGCGCATTACGCATCTCCGACCAGCCTCT
CCGGCAGACTGAGCGCCCGCACACTCGTTTCATGGGTAGACTTAAGCATACGGAGTTCATCGCCA
GTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGA
TCGATAGCACGCAGGGGGGACC
Done.