Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 124 of 402
Found at i:15463646 original size:26 final size:26
Alignment explanation
Indices: 15463596--15463648 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15463586 GTTGGCTTAG
* *
15463596 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
15463622 GCATACGGAGTTCAATCCCA-ATCTAA
1 GCATACGGAGTTC-ATCCCATATCTAA
15463648 G
1 G
15463649 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:15464552 original size:159 final size:158
Alignment explanation
Indices: 15464208--15464677 Score: 469
Period size: 158 Copynumber: 3.0 Consensus size: 158
15464198 TGAGATCGGA
* * * * * *
15464208 CTAGACCAAGGGTTACGGCAACAGGATCGATAGCACGCAGGGGGGACCGGG-TCGATCCCCGACT
1 CTAGACCGAGAGTTGCGACAACAGGATCGATAGCACGAAGGGGGGACCGGGCT-GATCCCCGGCT
* * *
15464272 TTCGCATTCTGCCTTTCCGATCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCAT
65 TGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCAT
* *
15464337 AGGGAGTTCATTCCATGTCCAAGCCCCAG
130 ACGGAGTTCATTCCATGTCTAAGCCCCAG
* * * ** *** *
15464366 CTGGACCGAGGGTTGTGGTAGTGGGATCGGTAGCACGAAGAGGGGGACCGGGCTGATCCCCGGCT
1 CTAGACCGAGAGTTGCGACAACAGGATCGATAGCACGAAG-GGGGGACCGGGCTGATCCCCGGCT
* * * * * **
15464431 TGCGCATTATGCCTCTCCGGTCGGCTCAGTGCTCACACGCTCATTTCATGGGTTAACTTAGGCAT
65 TGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * ****
15464496 ACGGAGTTCATTCCCTATCTAAG-ATTGG
130 ACGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * *
15464524 ATCAGATCGAGAGTTGCGACAACAGGATCGACAGCAC-ACAGGGGGGACAGGGCCGATCCCCGGC
1 CT-AGACCGAGAGTTGCGACAACAGGATCGATAGCACGA-AGGGGGGACCGGGCTGATCCCCGGC
* * * * * * * *
15464588 TTGTGCATTCTGCCTCTCCAGTCAGTTGAGCGCCCACATGCTCGTTCCGTTGGTTGGCTTAGGCA
64 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCA
15464653 TACGGAGTTCATTCCATGTCTAAGC
129 TACGGAGTTCATTCCATGTCTAAGC
15464678 ATATGGAGTT
Statistics
Matches: 247, Mismatches: 60, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
158 126 0.51
159 120 0.49
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CTAGACCGAGAGTTGCGACAACAGGATCGATAGCACGAAGGGGGGACCGGGCTGATCCCCGGCTT
GCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:15465390 original size:27 final size:26
Alignment explanation
Indices: 15465359--15465412 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15465349 GGTCACTGAG
15465359 GCATACAG-AGTTCATCCCCTAGTCTAA
1 GCATA-AGAAGTTCAT-CCCTAGTCTAA
* *
15465386 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATAAGAAGTTCATCCCTAGTCTAA
15465412 G
1 G
15465413 GTCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCTAGTCTAA
Found at i:15465891 original size:26 final size:26
Alignment explanation
Indices: 15465861--15465910 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15465851 TGGCTTAAAA
15465861 ATACGGAGTTCATT-CCATGTCTAACC
1 ATACGGAGTTCATTCCCA-GTCTAACC
*
15465887 ATACGGAGTTTATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
15465911 GATTGAACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAACC
Found at i:15466172 original size:170 final size:170
Alignment explanation
Indices: 15465961--15466279 Score: 462
Period size: 170 Copynumber: 1.9 Consensus size: 170
15465951 CAGGATCGAT
* * * * *
15465961 AGCACGCAGGGGGGATCGAGCCGATCCCTGACTTACGCATTCTATCTCTCCGGCCGACTGAGCGC
1 AGCACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTACCTCTCCGGCCGACTAAGCAC
15466026 CCGCACG-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
66 CCGCACGTC-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
*
15466090 GGACTGAGGGTTATGGCAGCAGGGTCGGTAACGGGATAGGC
130 GGACCGAGGGTTATGGCAGCAGGGTCGGTAACGGGATAGGC
* * * * *
15466131 AGCACGCAGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCA
1 AGCACGCAGGGGGGACCGAGCCGAT-CCCAGACTTACGCATTCTACCTCTCCGGCCGACTAAGCA
* * * *
15466195 CCGGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
65 CCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
*
15466260 GGACCGAGGGTTGTGGCAGC
130 GGACCGAGGGTTATGGCAGC
15466280 GGGACCGATA
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
170 126 0.96
171 5 0.04
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (170 bp):
AGCACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTACCTCTCCGGCCGACTAAGCAC
CCGCACGTCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCG
GACCGAGGGTTATGGCAGCAGGGTCGGTAACGGGATAGGC
Found at i:15466429 original size:159 final size:158
Alignment explanation
Indices: 15466205--15466569 Score: 378
Period size: 157 Copynumber: 2.3 Consensus size: 158
15466195 CCGGCACGTC
* * * * *
15466205 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCCCAGCCAGACCAAG
** * * * *
15466268 GGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGGGATCGGACTGAT-CCTCGACTTGCGCATTA
65 GGTTGCAGCAGCAGGACCGATAGCACGCAG-GGGGAAT-GGACCGATCCCT-GACTTGCGCATTA
* ***
15466332 TGCCTCTTCGGTAGGCTCAGCACCCGCACACT
127 TGCCTCTCCAACAGGCTCAGCACCCGCACACT
* * * **
15466364 TGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCAAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCAGACCAAGG
* * * * * *
15466428 GTTGCAGTAGCAGGATCGATAGCACGCAGGGGGAATGGGCCGATCCCTGGCTTGTGCATTCTGCC
66 GTTGCAGCAGCAGGACCGATAGCACGCAGGGGGAATGGACCGATCCCTGACTTGCGCATTATGCC
* * * *
15466493 TCTCCAACCGGCTGAGCGCCCGCACGCT
131 TCTCCAACAGGCTCAGCACCCGCACACT
* *
15466521 CATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
15466570 TTTGAGCCAC
Statistics
Matches: 168, Mismatches: 35, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
157 84 0.50
158 9 0.05
159 70 0.42
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCCAGCCAGACCAAGG
GTTGCAGCAGCAGGACCGATAGCACGCAGGGGGAATGGACCGATCCCTGACTTGCGCATTATGCC
TCTCCAACAGGCTCAGCACCCGCACACT
Found at i:15467285 original size:26 final size:26
Alignment explanation
Indices: 15467248--15467300 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15467238 GTTGACTTAG
15467248 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15467274 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
15467300 G
1 G
15467301 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15474388 original size:159 final size:158
Alignment explanation
Indices: 15474102--15474572 Score: 540
Period size: 159 Copynumber: 3.0 Consensus size: 158
15474092 AAGATCGAAT
* * ** **
15474102 CGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGTGACCAGGCCAATCCCCGGCTTG
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGG-GATCAGGCTGATCCTAGGCTTG
* * * *
15474167 CGCATTCTGCCTCTCCAACCGGC-CGAGCTCCCGGACGCCCGTTTCGTGGGTTGGCTTAGGCATA
65 CGCATTCTGCCTCTCCGACCGGCTC-AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* *
15474231 GGGAGTTCATTCCATGTCTAAGCCCCAG-C
129 CGGAGTTCATTCCATGTCTAAGCACCAGAC
* * *
15474260 CGGACTGAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGCGGGATCAGGCTGATCCTAGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAG-G-GGGATCAGGCTGATCCTAGGCTT
* * *
15474325 GCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
64 GCGCATTCTGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * *
15474390 CGAAGTTCATTCCCA-GTCTAAG-ATCGGAC
129 CGGAGTTCATT-CCATGTCTAAGCACCAGAC
* *
15474419 CGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGAGGGATCAGG-TCGATCCCTA-GC
1 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACA-GG-GGGATCAGGCT-GAT-CCTAGGC
* * * ** * *
15474482 TTGCGCATTCTACCTTTCTGGTCGGCTAAGCGCCCGCGCGCTCGTTTCGTGGGTTGGCTTAGGCA
62 TTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
*
15474547 TACGGCGTTCATTCCATGTCTAAGCA
127 TACGGAGTTCATTCCATGTCTAAGCA
15474573 TACAAAGTTC
Statistics
Matches: 264, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
158 41 0.16
159 211 0.80
160 12 0.05
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.21
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGATCAGGCTGATCCTAGGCTTGC
GCATTCTGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCACCAGAC
Found at i:15474866 original size:171 final size:171
Alignment explanation
Indices: 15474603--15474926 Score: 400
Period size: 171 Copynumber: 1.9 Consensus size: 171
15474593 TAAGATCGAA
*
15474603 CTGGACCGAGGGTTGCGGCAGTAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGGACCAGCT
1 CTGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGGACCAGCT
* * ** * *
15474668 CGATCCCTGGCCTACACATTCTGCCTCTCTGACCGGCTGAGCACTTGCACGCTCGTTTCGTGGGT
66 CGATCCCTGGCCTACACATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTTCGTGGGT
* * *
15474733 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCGG
131 TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCGG
* * * ** *
15474774 CTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGTAGCACGC-AGAGGGGGATCGAG
1 CTGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAG-GGGGGA-CCAG
* ** *** * *
15474838 CT-GATCCTTGGTTTGTGCATTATGCCTCTCCGACCGGTTGAGCGCCCGCACACTCATTTCGTGG
64 CTCGATCCCTGGCCTACACATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTTCGTGG
15474902 GTTGACTTAGGCATACGAAGTTCAT
129 GTTGACTTAGGCATACGAAGTTCAT
15474927 CCCCAATCTA
Statistics
Matches: 127, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
170 2 0.02
171 120 0.94
172 5 0.04
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (171 bp):
CTGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGGACCAGCT
CGATCCCTGGCCTACACATTATGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTTCGTGGGT
TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCGG
Found at i:15474949 original size:26 final size:26
Alignment explanation
Indices: 15474912--15474963 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15474902 GTTGACTTAG
15474912 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
15474938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15474964 AATCAGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15475288 original size:157 final size:160
Alignment explanation
Indices: 15474988--15475381 Score: 437
Period size: 158 Copynumber: 2.5 Consensus size: 160
15474978 GAGGGTTGCG
* * * * *
15474988 GCAGCACGCAGA-AGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG-CTGGCTGA
1 GCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTC-GGCTGA
* * * *
15475051 GCCCCCTGCACGCCCGTTTCATAGGTTGGCTTAGTCATAGGGAGTTAATTCCATGTCTAAGCCCC
65 GCGCCC-GCACGCCCATTTCATAGGTTGGCTTAGGCATAGGGAGTTAATTCCATATCTAAGCCCC
*
15475116 AGTCGGGCCAAGGGTTGT-GGCAGC-GGAT-A
129 AGTCGGACCAAGGGTTGTGGGCAGCAGGATCA
* *
15475145 GGCAGCACGCCG-GGGGTACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGA
1 -GCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGA
** * *
15475209 GCGCCCG-ACGCCCATTTTGTGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCC
65 GCGCCCGCACGCCCATTTCAT-AGGTTGGCTTAGGCATAGGGAGTTAATTCCATATCTAAGCCCC
*
15475273 AG-CTGGACCGAGGGTTGTGGGCAGCAGGATCA
129 AGTC-GGACCAAGGGTTGTGGGCAGCAGGATCA
* * * * * * * *
15475305 GCAGCATGCAGAGGGGGATCGAGCCGAT-CTTGGCTTGCGGCATTATGCCTCTTTGGTCGGCTCA
1 GCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGC-GCATTCTGCCTCTTCGGTCGGCTGA
15475369 GCGCCCGGCACGC
65 GCGCCC-GCACGC
15475382 TGGTTTCATA
Statistics
Matches: 198, Mismatches: 27, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
156 11 0.06
157 54 0.27
158 64 0.32
159 23 0.12
160 41 0.21
161 1 0.01
162 4 0.02
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (160 bp):
GCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAG
CGCCCGCACGCCCATTTCATAGGTTGGCTTAGGCATAGGGAGTTAATTCCATATCTAAGCCCCAG
TCGGACCAAGGGTTGTGGGCAGCAGGATCA
Found at i:15475616 original size:26 final size:27
Alignment explanation
Indices: 15475565--15475618 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
15475555 TTGGCTTAGG
*
15475565 GCATACGGAGTTCATTTCCACGTCTAA
1 GCATACGGAGTTCATTCCCACGTCTAA
15475592 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATTCCCACGTCTAA
15475618 G
1 G
15475619 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCACGTCTAA
Found at i:15476348 original size:27 final size:27
Alignment explanation
Indices: 15476297--15476351 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
15476287 GTTGACATAC
*
15476297 GCATACGAAGTTCATCCTTAGGTCTAA
1 GCATACGAAGTTCATCCTCAGGTCTAA
15476324 GCATACCGAAGTTCATTCC-CA-GTCTAA
1 GCATA-CGAAGTTCA-TCCTCAGGTCTAA
15476351 G
1 G
15476352 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 12 0.48
28 10 0.40
29 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (27 bp):
GCATACGAAGTTCATCCTCAGGTCTAA
Found at i:15476855 original size:27 final size:27
Alignment explanation
Indices: 15476801--15476879 Score: 128
Period size: 27 Copynumber: 3.0 Consensus size: 27
15476791 TTGGCCTTAG
*
15476801 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCATGTCTAA
15476827 GCATATGGAGTTCATTCCCATGTCTAA
1 GCATATGGAGTTCATTCCCATGTCTAA
15476854 GCATATGGAGTTCATTCCC--GTCTAA
1 GCATATGGAGTTCATTCCCATGTCTAA
15476879 G
1 G
15476880 ATCGGATCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 7 0.14
26 15 0.29
27 29 0.57
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (27 bp):
GCATATGGAGTTCATTCCCATGTCTAA
Found at i:15477707 original size:158 final size:156
Alignment explanation
Indices: 15477232--15477733 Score: 549
Period size: 158 Copynumber: 3.2 Consensus size: 156
15477222 CCCAGTCTAA
* * * * *
15477232 GCATATGGAGTTCATTCCGAATCTAAGATCGGACAGGACCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
15477297 GCACGGAGGGGGGATCAGGCCGATCCCTGGGTTGCGCATTCTGCCTCT-TCGGTCGGCTGAGCAC
65 GCACGCAGAGGGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCT-GGTCGGCTGAGCGC
* *
15477361 CCGCATGCTCGTTTCGTTGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * *
15477390 GCATACGGAGTTCATTCCAATTCTAAG-CCCCAGCCAGACCGAGGGTTATGGTAGCAGGACCGGC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * ** *
15477454 AGCACGCAGAGGGGGATCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCG
64 AGCACGCAGA-GGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCG
* *
15477519 CCCGCACGCTTGTTTCGTGGGTTGACTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15477549 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGATCAAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
15477614 GCACGCAGAAGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAACGCC
65 GCACGCAGAGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
15477679 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
15477707 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
15477734 CATAAGGAGT
Statistics
Matches: 278, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.02
158 146 0.53
159 122 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGAGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15477743 original size:26 final size:26
Alignment explanation
Indices: 15477707--15477759 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15477697 GTTGGCTTAG
*
15477707 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
15477733 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
15477759 G
1 G
15477760 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:15478105 original size:26 final size:26
Alignment explanation
Indices: 15478075--15478127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15478065 GTTGACTTAG
15478075 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15478101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15478127 G
1 G
15478128 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15478434 original size:159 final size:159
Alignment explanation
Indices: 15478229--15478636 Score: 466
Period size: 159 Copynumber: 2.6 Consensus size: 159
15478219 CAGCTGAACG
* *
15478229 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACC
1 CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACC
* **
15478294 GGACCGAGGGTTGTGGCAGC-GAGACCGACAGCACACAGAGGGGAACCGGGTCGATACTTAG-CT
66 GGACCGAGGGTTGTGGCAGCAG-GACCGACAGCACACAAAGGGGAACCGGGTCGAT-CCCAGACT
**
15478357 TGCT-CATTATGCCTCT-TCGGCTGGCTCAATG
129 TG-TGCATTATGCCTCTCT-GGCTGGCTCAACA
* * * * * ****
15478388 CCCGTATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATTGAAC
1 CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAAC
*** * ** * *
15478452 CGGACCGAGGGTTGCAACAGCAGGATCGACAGCATGCAAAGGGGGACCGGGTCGATCCCCGACTT
65 CGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGAACCGGGTCGATCCCAGACTT
* * *
15478517 GTGCATTCTGCCTCTCTGGCTGGCTGAGCA
130 GTGCATTATGCCTCTCTGGCTGGCTCAACA
* *
15478547 CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACC
*
15478612 GGATCGAGGGTTGTGGCAGCAGGAC
66 GGACCGAGGGTTGTGGCAGCAGGAC
15478637 AAGCGATGGG
Statistics
Matches: 201, Mismatches: 42, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 6 0.03
159 190 0.95
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACC
GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGAACCGGGTCGATCCCAGACTTG
TGCATTATGCCTCTCTGGCTGGCTCAACA
Found at i:15478806 original size:26 final size:26
Alignment explanation
Indices: 15478762--15478813 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15478752 TTGACTTTGA
*
15478762 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTGCATCCCCAGTCTAAG
*
15478788 CATACGGAGTGCATTCCCAGTCTAAG
1 CATACGGAGTGCATCCCCAGTCTAAG
15478814 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (26 bp):
CATACGGAGTGCATCCCCAGTCTAAG
Found at i:15479101 original size:691 final size:672
Alignment explanation
Indices: 15477796--15479295 Score: 1720
Period size: 691 Copynumber: 2.2 Consensus size: 672
15477786 GCAAGACGAG
* * * *
15477796 CAGCAGGATCGACAGCACGCAGGAGGGGATCGGGTCGATTCCTGGCTTGCACATTCTGCCTCTCC
1 CAGCAGGATCGACAGCACGCAGG-GGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC
*** *
15477861 GGTCGGCTGAG-TGTCGACACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATG
65 GGTCGGCTGAGCACCCG-CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * ** * * *
15477925 TCTAATCCCCACCCAAACCAAGGGTTATGGTAGCAGGACCGGCAACGAGATCGACAGCACGGAGA
129 TCTAAGCCCCACCCAAACCAAGGGTTATGGCAGCAGGACAAGCAACGAGATCAACAGCACGCAAA
** * *
15477990 GGGGGACCTTGCTGATCCCCGACTTGCGCATTATGCCTCTTCGACTGGTTGAGCGCCCGCACGCT
194 GGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGACAGGCTGAGCGCCCGCACGCT
* *
15478055 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCC
259 CATTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAATCTAAGCATACGGAGTGCATTCCC
* *
15478120 AGTCTAAGATCGGACCAGACCGAGGGTTGCGACAACAAGATCGACAACACGCAGGGGGGATCGAG
324 AGTCTAAGATCGGACCAGACCAAGGGTTGCGACAACAAGATCGACAACACGCAGGGGGGACCGAG
* *
15478185 CCGATCCCCGACTTACGCATTCTACCTCTCTAGCCAGCTGAACGCCCGCACGCCCGTTTCATGGG
389 CCAATCCCCGACTTACGCATTCTACATCTCTAGCCAGCTGAACGCCCGCACGCCCGTTTCATGGG
*
15478250 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCG
454 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCG
* ** * * *
15478315 AGACCGACAGCACACAGAGGGGAACCGGGTCGATACTTAGCTTGCTCATTATGCCTCTTCGGCTG
519 AGACCGACAACACACAGAGGGGAACCGGGTCGATACCCAGCTTGCGCATTATGCCTCTCCAGCTG
** * * * *
15478380 GCTCAATGCCCGTATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
584 GCTCAATGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
15478445 ATT-GAACCGGACCGAGGGTTGCAA
649 ATTAG-ACCGGACCGAGGGTTGCAA
* * * * *
15478469 CAGCAGGATCGACAGCATGCAAAGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCT
1 CAGCAGGATCGACAGCACGC-AGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC
* *
15478534 GG-CTGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATG
65 GGTC-GGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* ** * * * * * *
15478598 TCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGGACAAGCGATGGGATCAACAGCACGCAAA
129 TCTAAGCCCCACCCAAACCAAGGGTTATGGCAGCAGGACAAGCAACGAGATCAACAGCACGCAAA
* *
15478663 GGGGGATCGGGTTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAACTTTTCTGACAGGCTGA
194 GGGGGACCGGGCTGATCCCCGACTTGCGCATTATG-C-CT--------C--TTC-GACAGGCTGA
** * * * * * *
15478728 GCGCTTGTATGCTCGTTTCGTGGGTTGACTTTGACATACGGAGTTCATCCCCAGTCTAAGCATAC
246 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAATCTAAGCATAC
* *
15478793 GGAGTGCATTCCCAGTCTAAGATCAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATC-AGCA
311 GGAGTGCATTCCCAGTCTAAGATC-G----GACCAGACCAAGGGTTGCGACAACAAGATCGA-CA
* * * * ** * * * * *
15478857 ACACGTAGGGGGGACCGGGCCAATCCCTGGCTTGTGTATTCTGCATCTTTGGCC-GACTGAGCGC
370 ACACGCAGGGGGGACCGAGCCAATCCCCGACTTACGCATTCTACATCTCTAGCCAG-CTGAACGC
* * *
15478921 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
434 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * * *** * *
15478986 GACCAAGGGTTGTGGCAGCGGGATCGGCAACATGTAGAGGGGGACCGGG-CTGATCCCCAGCTTG
499 GACCAAGGGTTGTGGCAGCGAGACCGACAACACACAGAGGGGAACCGGGTC-GATACCCAGCTTG
* * *
15479050 CGCATTATGCCTCTCCAGCTGGCTCAGTGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATAT
563 CGCATTATGCCTCTCCAGCTGGCTCAATGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * *
15479115 GAAGTTCATTCCTAGTCTAAGATTAGATCGGACCGAGGGTTGCGA
628 GAAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCAA
* * * * * *
15479160 TAGCAGGATCGATAGCACGCAGGGGGGATCGAG-CTGATCCTCAACTTACGCATTCTGCCTCTCC
1 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGTC-GATCCCCGACTTGCGCATTCTGCCTCTCC
** * * * * *
15479224 AAATCGACTGAGCGCCCGCACCCTCGTTTC-GGGGTTGGCTTAGGCATACCGAGTTCATTCCATG
65 -GGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
15479288 TCTTAAGC
129 TC-TAAGC
15479296 ATACAGAGTT
Statistics
Matches: 684, Mismatches: 114, Indels: 40
0.82 0.14 0.05
Matches are distributed among these distances:
672 1 0.00
673 186 0.27
674 5 0.01
675 2 0.00
683 1 0.00
685 3 0.00
686 87 0.13
687 1 0.00
689 1 0.00
690 70 0.10
691 325 0.48
692 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (672 bp):
CAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCG
GTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCACCCAAACCAAGGGTTATGGCAGCAGGACAAGCAACGAGATCAACAGCACGCAAAGG
GGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGACAGGCTGAGCGCCCGCACGCTCA
TTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAATCTAAGCATACGGAGTGCATTCCCAG
TCTAAGATCGGACCAGACCAAGGGTTGCGACAACAAGATCGACAACACGCAGGGGGGACCGAGCC
AATCCCCGACTTACGCATTCTACATCTCTAGCCAGCTGAACGCCCGCACGCCCGTTTCATGGGTT
GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGAG
ACCGACAACACACAGAGGGGAACCGGGTCGATACCCAGCTTGCGCATTATGCCTCTCCAGCTGGC
TCAATGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
TAGACCGGACCGAGGGTTGCAA
Found at i:15479169 original size:159 final size:158
Alignment explanation
Indices: 15478828--15479296 Score: 399
Period size: 159 Copynumber: 3.0 Consensus size: 158
15478818 GATCAGACCA
* ** ** *
15478828 GACCAAGGGTTGCGACAGCAGGATCAGCAACACGTAGGGGGGACCGGGCCAATCCCTGGCTTGTG
1 GACCAAGGGTTGCGACAGCAGGATCGGCAACACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCG
* * *** * * * * *
15478893 TATTCTGCATCTTTGGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCAGCCGACTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATAGGA
*
15478958 AGTTCATTCCATGTCTAAGCCCCAGCCG
131 AGTTCATTCCATGTCTAAGCACCAGCCG
* * * *
15478986 GACCAAGGGTTGTGGCAGCGGGATCGGCAACATGTAGAGGGGGACCGGGCTGATCCCCAGCTTGC
1 GACCAAGGGTTGCGACAGCAGGATCGGCAACACGTAG-GGGGGACCGGGCTGATCCCCAGCTTGC
* * * * * * *
15479051 GCATTATGCCTCTCCAGCTGGCTCAGTGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATATG
65 GCATTCTGCCTCTCCAGCCGACTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATAGG
** *
15479116 AAGTTCATTCC-TAGTCTAAG-ATTAGATCG
130 AAGTTCATTCCAT-GTCTAAGCACCAG-CCG
* * ** * * * * * * *
15479145 GACCGAGGGTTGCGATAGCAGGATCGATAGCACGCAGGGGGGATCGAGCTGATCCTCAACTTACG
1 GACCAAGGGTTGCGACAGCAGGATCGGCAACACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCG
** * * * *
15479210 CATTCTGCCTCTCCAAATCGACTGAGCGCCCGCAC-CCTCGTTTCG-GGGTTGGCTTAGGCATAC
66 CATTCTGCCTCTCC-AGCCGACTCAGCGCCCACACGCC-CATTTCGTGGGTTGACTTAGGCATA-
*
15479273 CG-AGTTCATTCCATGTCTTAAGCA
128 GGAAGTTCATTCCATGTC-TAAGCA
15479297 TACAGAGTTC
Statistics
Matches: 243, Mismatches: 59, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
158 101 0.42
159 141 0.58
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GACCAAGGGTTGCGACAGCAGGATCGGCAACACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCG
CATTCTGCCTCTCCAGCCGACTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCATAGGA
AGTTCATTCCATGTCTAAGCACCAGCCG
Found at i:15481256 original size:26 final size:26
Alignment explanation
Indices: 15481220--15481270 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15481210 TGGCTTAGGC
15481220 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
15481246 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
15481271 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:15481443 original size:25 final size:25
Alignment explanation
Indices: 15481414--15481464 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
15481404 GTTGACTTAT
15481414 GCATACGG-GTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCC-AGTCTAA
* *
15481439 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
15481464 G
1 G
15481465 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:15481545 original size:193 final size:196
Alignment explanation
Indices: 15481167--15481548 Score: 479
Period size: 193 Copynumber: 2.0 Consensus size: 196
15481157 TGTGCATTCA
* * * * ** *
15481167 GCCTCTTCAGTTGGCTGAGCACCTGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCAGTCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
15481232 TCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCAACA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCAACA
* * *
15481297 GCAGGATTGGCAGCACGCAGGGGGGACTGGGCCGATTCCTAGCTTATGCATTCTGCCTCCTCAAC
131 GCAGGATCGGCAGCACGCAGGGGGGACTAGGCCGATTCCTAGCTTAGGCATTCTGCCTCCTCAAC
15481362 G
196 G
* * *
15481363 GCCTCTCCAGTCGGTTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTATGCATACGG-GTTCA
1 GCCTCTCCAGTCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * ***
15481427 TCCCTAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGATCAGATC-AGA-CGAGGGTTGCGGT
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCAAC
* * * *
15481489 AGCAGGATCGGTAGCACGCAGGGGGGA-TCAGGCTGA-TCCGTAGCTTGGGTATTCTGCCTC
130 AGCAGGATCGGCAGCACGCAGGGGGGACT-AGGCCGATTCC-TAGCTTAGGCATTCTGCCTC
15481549 TCCAGTCGGC
Statistics
Matches: 159, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
192 4 0.03
193 58 0.36
194 18 0.11
195 30 0.19
196 49 0.31
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (196 bp):
GCCTCTCCAGTCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCAACA
GCAGGATCGGCAGCACGCAGGGGGGACTAGGCCGATTCCTAGCTTAGGCATTCTGCCTCCTCAAC
G
Found at i:15482385 original size:26 final size:26
Alignment explanation
Indices: 15482356--15482408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15482346 GTTGACTTAG
15482356 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
15482382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
15482408 G
1 G
15482409 ATTGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:15482885 original size:26 final size:26
Alignment explanation
Indices: 15482856--15482908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15482846 GTTGGCTTAG
15482856 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15482882 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15482908 G
1 G
15482909 ATCGAACGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15483958 original size:26 final size:26
Alignment explanation
Indices: 15483922--15483974 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15483912 GTTGACTTAG
15483922 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCCT-GTCTAA
15483948 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCTGTCTAA
15483974 G
1 G
15483975 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCTGTCTAA
Found at i:15484453 original size:26 final size:26
Alignment explanation
Indices: 15484419--15484469 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15484409 TTGGCTTAGG
15484419 CATAAGGAGTTCATTCC-ATGTCTAAC
1 CATAAGGAGTTCATTCCTA-GTCTAAC
*
15484445 CATACGGAGTTCATTCCTAGTCTAA
1 CATAAGGAGTTCATTCCTAGTCTAA
15484470 GATCAAATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCTAGTCTAAC
Found at i:15484676 original size:25 final size:26
Alignment explanation
Indices: 15484626--15484677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15484616 GTTGACTTAG
15484626 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15484652 GCATACGGAGTTCAT-CCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15484677 G
1 G
15484678 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15485774 original size:26 final size:26
Alignment explanation
Indices: 15485722--15485774 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15485712 GTCGACTTAG
* * *
15485722 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
*
15485748 GCATACAGAGTTCATACCCAATTTAA
1 GCATACAGAGTTCATACCCAATCTAA
15485774 G
1 G
15485775 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:15486263 original size:26 final size:26
Alignment explanation
Indices: 15486211--15486263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15486201 GTTGGCTTAG
*
15486211 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15486237 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15486263 G
1 G
15486264 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15487522 original size:26 final size:26
Alignment explanation
Indices: 15487486--15487538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15487476 GTTGACTTAG
15487486 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
15487512 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15487538 G
1 G
15487539 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15487806 original size:159 final size:158
Alignment explanation
Indices: 15487564--15487856 Score: 390
Period size: 159 Copynumber: 1.8 Consensus size: 158
15487554 AGGTTACGGC
** *
15487564 AGCAGGATCGGCAACACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCCCCGG
1 AGCAGGATCGGCAACACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCCCCGC
* *
15487629 CAGGCTGAGTGCCCGCACGCCCATTCCGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
66 CAGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
15487694 AAGCCCTAGCCAAACCGAGGGTTGTGGT
131 AAGCCCTAGCCAAACCGAGGGTTGTGGT
* * * * * *
15487722 AGCAGGATCGGCATCATGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGGCAACACGCAG-GGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCCCCG
** * * * * * *
15487787 ACCA-GCTGAGCGCCCGCACGGTCGTTTCATGGGTTGTCTTAGGCATATGGAGTTCGTTCCATGT
65 -CCAGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGT
15487851 CTAAGC
129 CTAAGC
15487857 ATACGGAGTT
Statistics
Matches: 114, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 18 0.16
159 94 0.82
160 2 0.02
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (158 bp):
AGCAGGATCGGCAACACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCCCCGC
CAGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCT
AAGCCCTAGCCAAACCGAGGGTTGTGGT
Found at i:15487859 original size:26 final size:25
Alignment explanation
Indices: 15487829--15487880 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15487819 GTTGTCTTAG
* * *
15487829 GCATATGGAGTTCGTTCCATGTCTAA
1 GCATACGGAGTTCATT-CAAGTCTAA
15487855 GCATACGGAGTTCATTCAAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
15487880 G
1 G
15487881 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:15488580 original size:26 final size:26
Alignment explanation
Indices: 15488550--15488602 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15488540 GTTGACTTAG
15488550 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15488576 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15488602 G
1 G
15488603 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15489030 original size:158 final size:157
Alignment explanation
Indices: 15488576--15489077 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 157
15488566 CCCAGTCTAA
* * *
15488576 GCATACGGAGTTCATTCCCTGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATTGGACTGGATCGAGGGTTGCGATAGCAGGATCGACA
* * * * * * *
15488641 GCACCCAGGGGGGACCGGGTCGATCCCCGGTTTACGCATTCTGTCTCTCCGGCCGGCTGAGCACC
66 GCACGCAGGGGGGACCGGGCCG-TCCTCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
* * *
15488706 CGCACGCCCATTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **** * * * * ** *
15488734 GCATAGGGAGTTCATTCCATGTGTAAG-CCCCAGTCGGA-CCATGGGTTGTTGCT-GTGGGACCG
1 GCATACGGAGTTCATTCCATGTCTAAGATTGGACT-GGATCGA-GGGTTG-CGATAGCAGGATCG
* * * * * * * *
15488796 GCAGCATGCAGAGGGGGATCGGGCCGGTCCTCGACTTATGCATTTTGCCTCTCCAG-TCGGCTCA
63 ACAGCACGCAG-GGGGGACCGGGCC-GTCCTCGGCTTACGCATTCTGCCTCTCCGGCT-GGCTGA
** * **
15488860 ATGCCCGCACGCTTGTTTCGTGGGTTAACTTAG
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15488893 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACTGGATCGAGGGTTGCGGTAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGACTGGATCGAGGGTTGCGATAGCAGGATCGAC
*
15488957 AGCACGTAGGGGGGACCGGGCCAGTCCTCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCC-GTCCTCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGC
***
15489022 CTATACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15489051 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15489078 CATACGGAGT
Statistics
Matches: 259, Mismatches: 73, Indels: 24
0.73 0.21 0.07
Matches are distributed among these distances:
157 6 0.02
158 139 0.54
159 106 0.41
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGACTGGATCGAGGGTTGCGATAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGTCCTCGGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15489080 original size:26 final size:26
Alignment explanation
Indices: 15489051--15489103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15489041 GTTGGCTTAG
15489051 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15489077 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15489103 G
1 G
15489104 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15489460 original size:26 final size:26
Alignment explanation
Indices: 15489430--15489482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15489420 GTTGACTTAG
15489430 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15489456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15489482 G
1 G
15489483 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15496634 original size:159 final size:159
Alignment explanation
Indices: 15496393--15496755 Score: 379
Period size: 159 Copynumber: 2.3 Consensus size: 159
15496383 CGCACGCCCA
* * * * ** *
15496393 TTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCGTGTCTAAGCCCTAGCCGGACCGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCTAGCCGGACCGAGGGTT
* * *** * * * * * *
15496458 GTGGCAGTGGGACCGACAGCATGCAAAGGGGAACCGGGCCTATCCCTGGCTTGCGCATTATGCCT
66 GCGACAGCAAGACCGACAGCACGCAAAGGGGAACCAGGCCGATCCCTGACTTACGCATTATACCT
* * *
15496523 CTTCGACCGACTCAGTGCCCGCATGCTCG
131 CTCCGACCGACTCAGCGCCCCCATGCTCG
*
15496552 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGT
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCTAG-CCGGACCGAGGGT
* ** * * * *
15496616 TGCGACAGCAAGATCGACAGCACGCAGGGGGGGACTAGGTCGATCCCTGACTTACGCATTCTACC
65 TGCGACAGCAAGACCGACAGCACGCAAAGGGGAACCAGGCCGATCCCTGACTTACGCATTATACC
*
15496681 TCTCCGACCGACTGAGCGCCCCCATGCTCG
130 TCTCCGACCGACTCAGCGCCCCCATGCTCG
** * * *
15496711 TTTTGTGAGTTGACTTAGCCACACGAAGTTCATT-CCATGTCTAAG
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG
15496756 CATACGGAGT
Statistics
Matches: 167, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 5 0.03
159 162 0.97
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGACCTAGCCGGACCGAGGGTT
GCGACAGCAAGACCGACAGCACGCAAAGGGGAACCAGGCCGATCCCTGACTTACGCATTATACCT
CTCCGACCGACTCAGCGCCCCCATGCTCG
Found at i:15496882 original size:185 final size:185
Alignment explanation
Indices: 15496570--15497140 Score: 648
Period size: 185 Copynumber: 3.0 Consensus size: 185
15496560 GTTGACTTAG
* *
15496570 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GACAGCAAGA-TCGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCAGGACTAG-
* * * *
15496633 CAGCACGCAGGGGGGGA-CTAGGTCGAT-CCCTGACTTACGCATTCTACCTCTCCGACCGACTGA
64 CAGCACGCAGGGGGGGATC-GGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCCGACCGACTGA
* * * * *
15496696 GCGCCCCCATGCTCGTTTTGTGAGTTGACTTAGCCACACGAAGTTCATTCCATGTCTAA
127 GCGCCCGCATGCTCATTTCGTGGGTTGACTTAGCCATACGAAGTTCATTCCATGTCTAA
* * * *
15496755 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTGGCAGCAGCAGGACTAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGACTAGCA
* * * *
15496820 GCACGCAGGGAGGGATCGGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGATCGACTGAGCGC
66 GCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
* * *
15496885 CCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTGCATGTCTAA
131 CCGCATGCTCATTTCGTGGGTTGACTTAGCCATACGAAGTTCATTCCATGTCTAA
* * * * *
15496940 GCATACGAAGTTCATTCTCAGTGTAAGATCCGACCGGATCGAGGGTTGCAGCAGTAGGACTAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGACTAGCA
* *
15497005 GTCGGATCGGTAGCACGTAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCCGGC
66 G-C--A-C----GCA-G--GGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGAC
* * * * * *
15497070 TGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
120 CGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGCCATACGAAGTTCAT-TCCATGTCT
15497134 AA
184 AA
15497136 GCATA
1 GCATA
15497141 TAGAGTGCAT
Statistics
Matches: 325, Mismatches: 45, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
185 209 0.64
186 9 0.03
188 1 0.00
189 1 0.00
193 3 0.01
194 1 0.00
196 99 0.30
197 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGACTAGCA
GCACGCAGGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
CCGCATGCTCATTTCGTGGGTTGACTTAGCCATACGAAGTTCATTCCATGTCTAA
Found at i:15498281 original size:159 final size:159
Alignment explanation
Indices: 15498102--15498406 Score: 443
Period size: 159 Copynumber: 1.9 Consensus size: 159
15498092 CAGCCGAACC
* * * ** *
15498102 GAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGG-GGACCGGGCTGATCCCCGGCTTGCGCA
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCA-AGGGTGGACCGAGCCAATCCCCGGCTTGCACA
* *
15498166 TTATGCCTCTCCGATCGGCTCAGTGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAG
65 TTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAG
15498231 TTCATTCCCA-GTCTAAGATCGGATCGGACT
130 TTCATT-CCATGTCTAAGATCGGATCGGACT
15498261 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGTGGACCGAGCCAATCCCCGGCTTGCACAT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGTGGACCGAGCCAATCCCCGGCTTGCACAT
* * * * * * *
15498326 TCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCCTTTCATGGGTTGGCTTAGGCATACGGAGT
66 TATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
15498391 TCATTCCATGTCTAAG
131 TCATTCCATGTCTAAG
15498407 CATATAGAGT
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
158 7 0.05
159 122 0.95
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGTGGACCGAGCCAATCCCCGGCTTGCACAT
TATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
TCATTCCATGTCTAAGATCGGATCGGACT
Found at i:15498410 original size:26 final size:26
Alignment explanation
Indices: 15498380--15498432 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15498370 GTTGGCTTAG
*
15498380 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15498406 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15498432 G
1 G
15498433 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15498540 original size:185 final size:185
Alignment explanation
Indices: 15498221--15498592 Score: 494
Period size: 185 Copynumber: 2.0 Consensus size: 185
15498211 GTTGACTTAG
* * ** *
15498221 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAAGGTTGCGGCAGCAGGATCGACA
* * * * ***
15498286 GCACGCAAGGGTGGACCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGTTGGCTGAGCGC
66 GCACGCAAGGGGGGAACGAGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCCAGCTGAGCGC
*
15498351 CCGCACGCTCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACGCTCCTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
15498406 GCATATAGAGTTCATTCCTAGTCTAAGATCGAACCAAA-TCGAAGGTTGCGGCAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAAACT-GAAGGTTGCGGCAGCAGGATCGAC
* * * * * *
15498470 AGCACGCAAGGGGGGAACGGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGGCCAGTTGAGTG
65 AGCACGCAAGGGGGGAACGAGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCCAGCTGAGCG
* * * **
15498535 CCCGCACGCTCGTTTCGTTGGCTGGCTTAGGTGTACGGAGTTCATTCCATGTCTAA
130 CCCGCACGCTCCTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15498591 GC
1 GC
15498593 CCTAGCCAGA
Statistics
Matches: 160, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 1 0.01
185 159 0.99
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAAGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGGAACGAGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCCAGCTGAGCGC
CCGCACGCTCCTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15498873 original size:158 final size:157
Alignment explanation
Indices: 15498413--15498940 Score: 474
Period size: 159 Copynumber: 3.3 Consensus size: 157
15498403 TAAGCATATA
* * * * * *
15498413 GAGTTCATTCCTAGTCTAAGATCGAACCAAATCGAA-GGTTGCGGCAGCAGGATCGACAGCACGC
1 GAGTTCATTCCCAGTCTAAAATCGGACCAGA-CCAAGGGTTGCAGCAGCAGGATCGACAGCACG-
* * * * * * * *
15498477 AAGGGGGGAACGGGCCGATCCCTGACTTGCGCATTCTACCTCTCCGGCCAGTTGAGTGCCCGCAC
64 AAGGGGGG-ACAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCAC
* * **
15498542 GCTCGTTTCGTTGGCTGGCTTAGGTGTACG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
** ** * ** * *
15498572 GAGTTCATT-CCATGTCT-AAGCCCTAGCCAGACCAAGGGATGTGGTAGCGGGA-CTGACAGCAC
1 GAGTTCATTCCCA-GTCTAAAATCGGA-CCAGACCAAGGGTTGCAGCAGCAGGATC-GACAGCAC
* * * * * * *
15498634 -ACAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGCGCCCG
63 GA-AG-GGGGGACAGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCG
* *
15498698 CATGCTCGTTTCGTGGGTTGACTTAGGCATACG
125 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
15498731 GAGTTCATTCCCAGTCTAAAATCGGACCAGACCAAGGCTTGCAGCAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAAATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGAA
* * *
15498796 GGAGGGATCAGACTGATCCCTGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGC
66 GGGGGGA-CAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGC
* * **
15498861 TTGTTTCGTGGGTTGGGTTATCCATACG
130 TCGTTTCGTGGGTTGGCTTAGGCATACG
* * * *
15498889 AAGTTCATTCCCAGTCTAAGATCAGATC-GAACCAAGGGTTGCAGCAGCAGGA
1 GAGTTCATTCCCAGTCTAAAATCGGACCAG-ACCAAGGGTTGCAGCAGCAGGA
15498941 CTAGCAGTAG
Statistics
Matches: 292, Mismatches: 64, Indels: 27
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 132 0.45
159 150 0.51
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAAATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGAA
GGGGGGACAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:15499083 original size:26 final size:26
Alignment explanation
Indices: 15499053--15499105 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15499043 TTTGACTTAG
* *
15499053 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
* *
15499079 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
15499105 G
1 G
15499106 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAGTCTAA
Found at i:15500145 original size:158 final size:158
Alignment explanation
Indices: 15499757--15500173 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 158
15499747 TTCAAAGGCT
* * * *
15499757 GATCCTCGGCTTGTGCATTCTGCCTCTCCGGCTAGCTGAGCGCCCGCACACCCGTTTCATGGGTT
1 GATCCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCC-CACGCTCGTTTCATGGGTT
* * * * **
15499822 GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGATCGATGATTGTGGCAGCGAG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGATTAAGGCAGCGAG
* **
15499887 ACCAATAGTACACAGAGGGGGACCGAGTC
130 ACCAACAACACACAGAGGGGGACCGAGTC
* * * * * * * *
15499916 GATCCCCGGCTTGCGCATTATGCCTCCCCGA-TCAGCTCAGTGCCCCTACGTTCATTTCGTGGGT
1 GATCCTCGGCTTGCGCATTCTGCCTCTCCGACT-AGCTGAGCGCCCC-ACGCTCGTTTCATGGGT
* * ** * * *
15499980 TGACTTAGGCATACAGAGTTCATTCTCA-GTCTAAG-ATCGGATCAGACCGAAGGTTAAGGCAGC
64 TGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAG-CCAGACCGAAGATTAAGGCAGC
*** * * *
15500043 -AGGATTGACAACACGCAG-GGGGGATCGGGTC
127 GA-GACCAACAACACACAGAGGGGGACCGAGTC
* *
15500074 GATCCTCGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCACACGCTCGTTTCATGGGTT
1 GATCCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCC-CACGCTCGTTTCATGGGTT
15500139 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15500174 ATACGGAGTT
Statistics
Matches: 203, Mismatches: 46, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 96 0.47
159 103 0.51
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
GATCCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCCACGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGATTAAGGCAGCGAGA
CCAACAACACACAGAGGGGGACCGAGTC
Found at i:15500176 original size:26 final size:26
Alignment explanation
Indices: 15500146--15500198 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15500136 GTTGGCTTAG
15500146 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15500172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15500198 G
1 G
15500199 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15500985 original size:159 final size:157
Alignment explanation
Indices: 15500544--15501040 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 157
15500534 ATCGGTAGTC
**
15500544 TAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-AGGTTACGGTAGCAGGAT
1 TAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACTGGA-CGAGA-GTTACGGTAGCAGGAT
* * ** * * *
15500607 CGACAGCACGCA-GGAGGGACCAAGCCAATCCTCGGCTTGCGCATTCTACCTCTCCGACCGGCTG
63 CGACAGAACGCAGGGAGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTTCGACCGGCT-
* * * *
15500671 AAAGCCCGCACGTTCATTTTATGGGTTGGCT
127 AATGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * * ** * *
15500702 TAGGCATACGAAGTTCATT-CCATGTCTATG-CCGCAGTCGGACTGAGGGTTGTGGTAACAGGAC
1 TAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGACT-GGAC-GAGAGTTACGGTAGCAGGAT
* * * * * * * ** * *
15500765 CGACAGTATGCAGAGAGGGATCGGGTCGATCCCCGGTTTGTTCATTATGCCTATCTC-ACCGGCT
63 CGACAGAACGCAGGGAGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCT-TCGACCGGCT
* * *
15500829 CTATGCCCACACGCTCGTTTCATGGGTTGACT
127 -AATGCCCGCACGCTCGTTTCATGGGTTGGCT
* * *
15500861 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGAGTTACGGTAGCAAGATTG
1 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGA-CGAGAGTTACGGTAGCAGGATCG
* * * * *
15500926 ACAAAACGTAGGGTGGGATCGGGCCAATCCTCGGCTTACACATTCTGCCTCTTCGACCGGCTGAG
65 ACAGAACGCAGGGAGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTTCGACCGGCT-AA
*
15500991 TGCCCGTACGCTCGTTTCATGGGTTGGCT
129 TGCCCGCACGCTCGTTTCATGGGTTGGCT
15501020 TAGGCATACGAAGTTCATTCC
1 TAGGCATACGAAGTTCATTCC
15501041 ATGTCTATGC
Statistics
Matches: 259, Mismatches: 69, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
157 7 0.03
158 51 0.20
159 192 0.74
160 9 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (157 bp):
TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACGAGAGTTACGGTAGCAGGATCGA
CAGAACGCAGGGAGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTTCGACCGGCTAATG
CCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:15501072 original size:26 final size:26
Alignment explanation
Indices: 15501023--15501073 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15501013 GTTGGCTTAG
*
15501023 GCATACGAAGTTCATTCCATGTCTAT
1 GCATACGAAGTTCATTACATGTCTAT
15501049 GCATACGAAGTTCATTTACA-GTCTA
1 GCATACGAAGTTCA-TTACATGTCTA
15501074 AGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (26 bp):
GCATACGAAGTTCATTACATGTCTAT
Found at i:15501945 original size:26 final size:26
Alignment explanation
Indices: 15501895--15501947 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15501885 GTTGGCTTAG
* *
15501895 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
15501921 GCATACGGAGTTCAATCCCA-ATCTAA
1 GCATACGGAGTTC-ATCCCATATCTAA
15501947 G
1 G
15501948 ATTTTGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:15502646 original size:26 final size:26
Alignment explanation
Indices: 15502617--15502668 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15502607 TAACTTAGGC
*
15502617 ATACGGAGTTCATCCCTAGTGTAAGA
1 ATACGGAGTTCATCCCTAGTCTAAGA
*
15502643 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGGAGTTCATCCCTAGTCTAAGA
15502669 TTAGACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCCTAGTCTAAGA
Found at i:15503035 original size:159 final size:157
Alignment explanation
Indices: 15502643--15503071 Score: 404
Period size: 159 Copynumber: 2.7 Consensus size: 157
15502633 TAGTGTAAGA
* * * * **
15502643 ATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGATCAAGGGTTGCAACAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCTGCAGCAGGATCGACAGC
* * * ** *
15502708 ACGC-AAGGGGTACC-AGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGTGCT
66 ACGCAAAGGGG-ACCGA-GCCGATCCCTGGCTTGCGCA-TCTGCCTCTCCGGCCGGCTCAACGCC
* * *
15502771 CGAACGTCAGTTTCGTGGGTTGGCTTAGGC
128 CGAACGTCAGTTTCATGGGTTGACTTAGAC
* ** * * * * * *
15502801 ATA-AGGAGCTCATT-CCATGTCTAAGGCCCAG-TCGGACCAAGGGTT-TTGGCAACGGGACCGG
1 ATACA-GAGTTCATTCCCA-GTCTAA-GATCAGATCGGATCAAGGGTTGCT-GCAGCAGGATCGA
* * * *
15502862 CAGTATGCAAAAGGGGACCGAGCCAATCCCTGGCTTGCGCACTATGCCTCTCCGGCCGGCTCAAC
62 CAGCACGC-AAAGGGGACCGAGCCGATCCCTGGCTTGCGCA-TCTGCCTCTCCGGCCGGCTCAAC
*
15502927 GCCCGCACGCTCA-TTTCATGGGTTGACTTAGAC
125 GCCCGAACG-TCAGTTTCATGGGTTGACTTAGAC
*
15502960 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCTGCAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCTGCAGCAGGATCGACAGC
* ** *
15503025 ACGCAGAAGGGGACCGGGATGATCCCTGGCTTGTGCATCTGCCTCTC
66 ACGCA-AAGGGGACCGAGCCGATCCCTGGCTTGCGCATCTGCCTCTC
15503072 AACCTGCTGA
Statistics
Matches: 210, Mismatches: 48, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
157 2 0.01
158 57 0.27
159 136 0.65
160 15 0.07
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (157 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCTGCAGCAGGATCGACAGC
ACGCAAAGGGGACCGAGCCGATCCCTGGCTTGCGCATCTGCCTCTCCGGCCGGCTCAACGCCCGA
ACGTCAGTTTCATGGGTTGACTTAGAC
Found at i:15503447 original size:13 final size:13
Alignment explanation
Indices: 15503429--15503454 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15503419 TATGCATTAT
15503429 GCCTCTCCGACCG
1 GCCTCTCCGACCG
15503442 GCCTCTCCGACCG
1 GCCTCTCCGACCG
15503455 ATTGAGTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.23, T:0.15
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:15504451 original size:26 final size:25
Alignment explanation
Indices: 15504414--15504465 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
15504404 GTTGGCTTAG
*
15504414 GCATACGAAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
15504440 GCATAC-AGAGTTCATTCCAGTCTAA
1 GCATACGA-AGTTCATTCCAGTCTAA
15504465 G
1 G
15504466 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:15505533 original size:159 final size:159
Alignment explanation
Indices: 15505234--15505669 Score: 384
Period size: 159 Copynumber: 2.7 Consensus size: 159
15505224 GACAGCACGC
* * * * *
15505234 AGGGGGTATCGGGCCGATCCCCGACTTGCGGATTCCGTCTCTCCGGTCGGCTGAACGCCCGCACG
1 AGGGGGTATCGGGCCGATCCCCGACTTGCGCATTACGCCTCTCCGGTCGGCTCAACACCCGCACG
* * *
15505299 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAA
66 CCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-CATAGCCGGACCGAA
*
15505364 GGTTGTGGCAGTGAGACCGGCAACACGTAG
130 GGTTGCGGCAGTGAGACCGGCAACACGTAG
** * * *
15505394 AGGGGG-ATCGGGCCGATCTTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACG
1 AGGGGGTATCGGGCCGATCCCCGACTTGCGCATTACGCCTCTCCGGTCGGCTCAACACCCGCACG
* * *
15505458 CTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCA-GTCTAAG-ATAGGATCGGACCG
66 CCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATA-G-CCGGACCG
* * * * *
15505521 AGGGTTGCGGCAG-CAGGATCGACAAGCAC--AC
128 AAGGTTGCGGCAGTGA-GACCGGCAA-CACGTAG
* * ** * ** * * * ** *
15505552 AGGGGGGACCATGCCGGTCCCC-AGCTTAAGCATT-CTGCCTCTCCAGTCGGTTGAGGACCCACA
1 AGGGGGTATCGGGCCGATCCCCGA-CTTGCGCATTAC-GCCTCTCCGGTCGGCTCAACACCCGCA
** * * *
15505615 CGTTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGCCTAAGCATA
64 CGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
15505670 CGGAGTTCAT
Statistics
Matches: 224, Mismatches: 42, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 12 0.05
159 195 0.87
160 15 0.07
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
AGGGGGTATCGGGCCGATCCCCGACTTGCGCATTACGCCTCTCCGGTCGGCTCAACACCCGCACG
CCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAGCCGGACCGAAG
GTTGCGGCAGTGAGACCGGCAACACGTAG
Found at i:15505672 original size:26 final size:26
Alignment explanation
Indices: 15505636--15505708 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
15505626 TGGGTTGGCT
15505636 TAAGCATACGGAGTTCATTCCATGCC
1 TAAGCATACGGAGTTCATTCCATGCC
*
15505662 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGCC
*
15505688 TAAGCATACGAAGTTCATTCC
1 TAAGCATACGGAGTTCATTCC
15505709 CAGTGTAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGCC
Found at i:15505717 original size:26 final size:25
Alignment explanation
Indices: 15505636--15505717 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 25
15505626 TGGGTTGGCT
15505636 TAAGCATACGGAGTTCATTCCA-TG
1 TAAGCATACGGAGTTCATTCCAGTG
*
15505660 CCTAAGCATACGGAGTTCATTCCATGTC
1 --TAAGCATACGGAGTTCATTCCA-GTG
*
15505688 TAAGCATACGAAGTTCATTCCCAGTG
1 TAAGCATACGGAGTTCATT-CCAGTG
15505714 TAAG
1 TAAG
15505718 ATCATACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 46 0.92
27 3 0.06
28 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (25 bp):
TAAGCATACGGAGTTCATTCCAGTG
Found at i:15505892 original size:26 final size:26
Alignment explanation
Indices: 15505853--15505931 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15505843 GTTTCGTGGG
15505853 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15505879 GCTTACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15505905 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15505931 G
1 G
15505932 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15505905 original size:214 final size:214
Alignment explanation
Indices: 15505639--15506066 Score: 750
Period size: 214 Copynumber: 2.0 Consensus size: 214
15505629 GTTGGCTTAA
15505639 GCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTC
1 GCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTC
* *
15505704 ATTCCCAGTGTAAGATCATACCGGACCGAGGGTTGCGACAGCAGGAACAGTAGTAGGATCAGTAG
66 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGAACAGTAGTAGGATCAGTAG
*
15505769 CACGCAATGAGGGATCGGGCTGATCCTCGACTTGCGCATTCTGC-TTCTCCGACCGGCTGAGTGC
131 CACGCAATGAGGGATCGGACTGATCCTCGACTTGCGCATTCTGCTTTCTCCGA-CGGCTGAGTGC
*
15505833 CCGCACACTCGTTTCGTGGG
195 CCGCACACTCGTTTCATGGG
* *
15505853 GCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCATTCCATGTCTAAGCATACGAAGTTC
1 GCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTC
15505918 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGAACAGTAGTAGGATCAGTAG
66 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGAACAGTAGTAGGATCAGTAG
* * *
15505983 CACGCAATGAGGGATCGGACTGATCCTCGGCTTGCGCATTCTGCTTTTTCGGACGGCTGAGTGCC
131 CACGCAATGAGGGATCGGACTGATCCTCGACTTGCGCATTCTGCTTTCTCCGACGGCTGAGTGCC
*
15506048 CGCACGCTCGTTTCATGGG
196 CGCACACTCGTTTCATGGG
15506067 TTGGCTTAGG
Statistics
Matches: 203, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
214 197 0.97
215 6 0.03
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (214 bp):
GCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGAACAGTAGTAGGATCAGTAG
CACGCAATGAGGGATCGGACTGATCCTCGACTTGCGCATTCTGCTTTCTCCGACGGCTGAGTGCC
CGCACACTCGTTTCATGGG
Found at i:15506621 original size:159 final size:158
Alignment explanation
Indices: 15506428--15506761 Score: 379
Period size: 159 Copynumber: 2.1 Consensus size: 158
15506418 GCAGAGGGAT
** * ** **
15506428 TTCATTCCATGTCTAAGCCCCAG-CCGGACAGAGGGTTGTGGCAGCAGGATCGGCAGCACGC-AG
1 TTCATTCCATGTCTAAG-ATCAGATCGGACAGAGGGTTGCAGCAGCAGGATCGAAAGCACGCAAG
* * *
15506491 AGGGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCG-CTCGCACG
65 A-GGGGATCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTC-GCTCAGCGCCT-GCACG
*
15506555 TTCATTTCATGGGTTACCTTACGCATACGGAG
127 CTCATTTCATGGGTTACCTTACGCATACGGAG
* * *
15506587 TTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCAGTAGTAGGATCGAAAGCACGCAAG
1 TTCATT-CCATGTCTAAGATCAGATCGGACAGAGGGTTGCAGCAGCAGGATCGAAAGCACGCAAG
* * * * *
15506651 AGGGGATCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGTTGAGTGCCTGCACGCTC
65 AGGGGATCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGCTCAGCGCCTGCACGCTC
* ** * *
15506716 GTTTCATGGGTTGGCTTAGGTATACGGAG
130 ATTTCATGGGTTACCTTACGCATACGGAG
15506745 TTCATTCCATGTCTAAG
1 TTCATTCCATGTCTAAG
15506762 CTTATGGAGT
Statistics
Matches: 146, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
157 3 0.02
158 52 0.36
159 85 0.58
160 6 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
TTCATTCCATGTCTAAGATCAGATCGGACAGAGGGTTGCAGCAGCAGGATCGAAAGCACGCAAGA
GGGGATCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGCTCAGCGCCTGCACGCTCA
TTTCATGGGTTACCTTACGCATACGGAG
Found at i:15507121 original size:26 final size:26
Alignment explanation
Indices: 15507091--15507143 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15507081 GTTGGCTTAG
15507091 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15507117 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15507143 G
1 G
15507144 ATCGAGTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15507496 original size:26 final size:26
Alignment explanation
Indices: 15507446--15507498 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15507436 GTTGACTTAG
* *
15507446 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
15507472 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
15507498 G
1 G
15507499 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:15507812 original size:344 final size:351
Alignment explanation
Indices: 15507071--15507816 Score: 854
Period size: 355 Copynumber: 2.1 Consensus size: 351
15507061 TGAGTGCTCG
*
15507071 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAAGCATACGGAGTTCATTCC
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGCATACGGAGTTCATTCC
* * * * * *
15507135 CAGTCTAAGATCGAGTCAGACCGAGGGTTGTGACAGGACGATCGACAGCATGCAGGGGCGGATCG
65 CAATCTAAGATCGAGTCAGACCGAGGGTTGCGACAGCACGATCGACAGCACGAAGAGGCGGATCG
* * * * * * * *
15507200 AGCCGGTCCCCGGCTTGCACATTCTGCCTTTACGGTCGACTGAGCGCCCGCACGCTCGTTTCATT
130 AGCCGATCCCCGACTTACACATTCTGCCTATACGGCCGACTGAGCGCCCGCACGCCCATTTCATG
* * * *
15507265 GGTCGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGT
195 GGTCGCTTAGGCAGATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGT
* * *
15507330 AGGATTGACACCGGGATCGGCAACACGCAGAGGGGGACTAGGCTGATCACCGACTTCCGTATTAT
260 AGG--TGA-ACCGGGATCAGCAACAC-CAGAGGGGGACCAAGCTGATCACCGACTTCCGTATTAT
* * * *
15507395 GCCTCTCCGATCGGCTGAGCACCCGCACGCT
321 GCCTCTCCGACCGGCTCAGCACCCGAACGCC
* * *
15507426 CATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCC
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
* * ** *
15507491 AATCTAAGATC-AGATCAGATCGAGTGTTGCGGTAGCAGGATC-AGCAGCACGTAAGAGG-GGAT
66 AATCTAAGATCGAG-TCAGACCGAGGGTTGCGACAGCACGATCGA-CAGCACG-AAGAGGCGGAT
* * ** * * * **
15507553 CGGGTCGATCCCCGACTTATGCATTCTGCCTATCCGGCCGATTGAGTGCCCGCACGCCCATTTTG
128 CGAGCCGATCCCCGACTTACACATTCTGCCTATACGGCCGACTGAGCGCCCGCACGCCCATTTCA
*
15507618 TGGGTTGCCTTAGGCAGATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
193 TGGGTCG-CTTAGGCAGATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
* *
15507683 AG-CGG-G-ACC-GG-T-AGC-ACA-CAGAGGGGGACCAAG-TAGATC-CTCGACTTGCGTATTA
257 AGTAGGTGAACCGGGATCAGCAACACCAGAGGGGGACCAAGCT-GATCAC-CGACTTCCGTATTA
* *
15507738 TGCCTCTCCGACCGGTTCAGCACCCGAATGCC
320 TGCCTCTCCGACCGGCTCAGCACCCGAACGCC
*
15507770 CATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAG
1 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
15507817 ATCGGACCGG
Statistics
Matches: 332, Mismatches: 52, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
343 2 0.01
344 99 0.30
346 3 0.01
347 2 0.01
348 1 0.00
349 2 0.01
350 3 0.01
352 1 0.00
354 3 0.01
355 156 0.47
356 60 0.18
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (351 bp):
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
AATCTAAGATCGAGTCAGACCGAGGGTTGCGACAGCACGATCGACAGCACGAAGAGGCGGATCGA
GCCGATCCCCGACTTACACATTCTGCCTATACGGCCGACTGAGCGCCCGCACGCCCATTTCATGG
GTCGCTTAGGCAGATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTA
GGTGAACCGGGATCAGCAACACCAGAGGGGGACCAAGCTGATCACCGACTTCCGTATTATGCCTC
TCCGACCGGCTCAGCACCCGAACGCC
Found at i:15508176 original size:197 final size:197
Alignment explanation
Indices: 15507861--15508218 Score: 522
Period size: 197 Copynumber: 1.8 Consensus size: 197
15507851 GACAGCACGA
* * * * *
15507861 AGGGGGGGATCGGGCCGATCCCCGGCTTGCGGATTTTGCCTCTCTGGCCGGCTGAGCGCCCGTAC
1 AGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
* * *
15507926 GCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATATCTAAGCATACGAAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCCCATATCTAAGCATACGAAGTGCATT
15507991 CCCAGTCTAAGATC-AGACTGGACTGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGTAGCA
131 CCCAGTCTAAGATCGA-ACTGGACTGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGTAGCA
15508055 CAC
195 CAC
* * * *
15508058 AGGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGACCGGTTGAGCGCCCGCAC
1 AGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
* ** * *
15508123 GCTCGTTTCTTGGGTTGACTTAGGCATATGGAGTTTATCCCCA-GTCTAAGCATACGGAGTGCAT
66 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACAT-CCCATATCTAAGCATACGAAGTGCAT
*
15508187 TCCTAGTCTAAGATCGAACTGGACTGAGGGTT
130 TCCCAGTCTAAGATCGAACTGGACTGAGGGTT
15508219 ACAACAGCAG
Statistics
Matches: 141, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
197 137 0.97
198 4 0.03
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (197 bp):
AGGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCCCATATCTAAGCATACGAAGTGCATT
CCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGGTAGCAC
AC
Found at i:15508366 original size:26 final size:26
Alignment explanation
Indices: 15508330--15508382 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15508320 GTTGGCTTAG
15508330 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15508356 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15508382 G
1 G
15508383 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15508414 original size:184 final size:183
Alignment explanation
Indices: 15508035--15508541 Score: 518
Period size: 184 Copynumber: 2.7 Consensus size: 183
15508025 GCAGCAGGAC
** * * * * * * * *
15508035 CAACAGCAGGATCGGTAGCACACAGGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTT
1 CAACAGCAGGATCGACAGCACGCA-AGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTACCTC
* * * * *
15508100 TCCGACCGGTTGAGCGCCCGCACGCTCGTTTCT-TGGGTTGACTTAGGCATATGGAGTTTATCCC
65 TCCGACCGGCTGAGCGCCCGCACCCT-GTTT-TGTGGGTTGGCTTAGGCATACGGAGTTCATCCC
* *
15508164 CAGTCTAAGCATACGGAGTGCATTCCTAGTCTAAGATCGAACTGGACTGAGGGTTA
128 CAGTCTAAGCATACGGAGTGCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTA
* * * * * *
15508220 CAACAGCAGGATC-AGTAGCATGCAATGGGGA-TCGGGCTGATCCCCAGCTTACGTATTCTATCT
1 CAACAGCAGGATCGA-CAGCACGCAAGGGGGACT-GGGCCGATCCCCAGCTTACGCATTCTACCT
* *
15508283 CTCTGACCGGCTGAGCACCCGCACACCTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCC
64 CTCCGACCGGCTGAGCGCCCGCAC-CCTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCC
* * *
15508348 CAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTG
128 CAGTCTAAGCATACGGAGTGCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTA
*** * * **
15508404 CGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATTCCCAGCTTGTGCATTCTACCTCT
1 CAACAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTACCTCT
* * * * ** * * *
15508469 CCGATCGACTGATCGCCCGTACGCCAATTTTGTTGGTTGGCTTAGGCATAGGGAGTTCAT-TCCA
66 CCGACCGGCTGAGCGCCCGCAC-CCTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA
15508533 CGTCTAAGC
130 -GTCTAAGC
15508542 CCAAGTCGGA
Statistics
Matches: 265, Mismatches: 50, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
183 5 0.02
184 236 0.89
185 24 0.09
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (183 bp):
CAACAGCAGGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTACCTCT
CCGACCGGCTGAGCGCCCGCACCCTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAG
TCTAAGCATACGGAGTGCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTA
Found at i:15508740 original size:159 final size:158
Alignment explanation
Indices: 15508356--15508752 Score: 374
Period size: 159 Copynumber: 2.5 Consensus size: 158
15508346 CCCAGTCTAA
* *
15508356 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
** * * * * * *
15508421 GCACGCAGGGGGGACTGGGCCGATTCCCAGCTTGTGCATTCTACCTCTCCGATCGACTGATCGCC
66 GCACGCAGGGGGGACCAGACCGATTCCCAGCTTGCGCATTATACCTCTCCGATCGACTCAGCACC
* * *
15508486 CGTACGCCAATTTTGTTGGTTGGCTTAG
131 CGTACGCCAATTTCGTGGGTTGACTTAG
* * ** * * * * *
15508514 GCATAGGGAGTTCATTCC-ACGTCTAAG-CCCAAGTCGGATCGAAGGTTGTGGCAGC-GGAACCG
1 GCATACGGAGTTCATTCCTA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGG-ATCG
* * * *
15508576 GTAGCACGCAGAGGGGTACCAGACCGA-TCCCAAGCTTGCGCATTATGCCTCTCCGA-CTGGCTC
63 ATAGCACGCAG-GGGGGACCAGACCGATTCCC-AGCTTGCGCATTATACCTCTCCGATC-GACTC
***
15508639 AGCACCCG-ATCGCTTGTTTCGTGGGTTGACTTAG
125 AGCACCCGTA-CGCCAATTTCGTGGGTTGACTTAG
* * * *
15508673 GCATACGGAGTTCATTCCTAATGTAAGATCGGACCGGACCGAGGGTTACGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
*
15508738 GCACGTAAGGGGGGA
66 GCACG-CAGGGGGGA
15508753 TCGGGCCGGT
Statistics
Matches: 183, Mismatches: 45, Indels: 21
0.73 0.18 0.08
Matches are distributed among these distances:
157 5 0.03
158 59 0.32
159 113 0.62
160 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCAGACCGATTCCCAGCTTGCGCATTATACCTCTCCGATCGACTCAGCACC
CGTACGCCAATTTCGTGGGTTGACTTAG
Found at i:15508861 original size:26 final size:26
Alignment explanation
Indices: 15508832--15508884 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15508822 GTTGGCCTAG
*
15508832 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15508858 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15508884 G
1 G
15508885 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15509049 original size:25 final size:25
Alignment explanation
Indices: 15508998--15509049 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
15508988 GTTGACGTAG
*
15508998 GCATACTGAGTTCTTCCCCAGTCTAA
1 GCATACGGAGTTCTT-CCCAGTCTAA
15509024 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTC-TTCCCAGTCTAA
15509049 G
1 G
15509050 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 12 0.50
27 2 0.08
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCTTCCCAGTCTAA
Found at i:15510571 original size:170 final size:169
Alignment explanation
Indices: 15510342--15510755 Score: 480
Period size: 171 Copynumber: 2.4 Consensus size: 169
15510332 ACTCGTTTCG
* * ** *
15510342 TGGGTTGACTTAGGCATACAGAGTTCA-TTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACAGAGTTCATTTCAT-GTCTAAGCCCAG-TCAGA-CGAGGGTTGTGG
* * *
15510406 CAGCAGGACCA-ACAGCAAGATCGGCAGCATGCAG-GGGGGATCG-GGTCGATCC-TCGACTTGC
63 CAGCAGGACCAGA-AGCAAGATCGACAGCACGCAGAGGGGGATCGAGCT-GATCCAT-GACTTGC
* * * *
15510467 GCATTCTGCCTCT-TCGACCGACTGAGCGCCTGCACGCTCAATTCA
125 ACATTCTACCTCTCT-GACCGACTGAGCACCCGCACGCTCAATTCA
*
15510512 TGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCTAGTCAGACAGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCCC-AGTCAGAC-GAGGGTTGTGGC
** *
15510577 AGCAGGTTCAGAAGCAAGATCGACAGCACGCAGAGGGGGATCGAGCTGATCCATGGCTTGCACAT
64 AGCAGGACCAGAAGCAAGATCGACAGCACGCAGAGGGGGATCGAGCTGATCCATGACTTGCACAT
* * ** **
15510642 TCTACCTCTCTGGCCTACTGAGCACCCGCACGCTCGTTTGG
129 TCTACCTCTCTGACCGACTGAGCACCCGCACGCTCAATTCA
* *
15510683 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGTCAGACCGAGGGTTATGGCA
1 TGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCAGTCAGA-CGAGGGTTGTGGCA
15510748 GCAGGACC
65 GCAGGACC
15510756 GATAGCGGGA
Statistics
Matches: 208, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
169 1 0.00
170 101 0.49
171 102 0.49
172 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (169 bp):
TGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCAGTCAGACGAGGGTTGTGGCAG
CAGGACCAGAAGCAAGATCGACAGCACGCAGAGGGGGATCGAGCTGATCCATGACTTGCACATTC
TACCTCTCTGACCGACTGAGCACCCGCACGCTCAATTCA
Found at i:15510858 original size:170 final size:168
Alignment explanation
Indices: 15510324--15510893 Score: 572
Period size: 170 Copynumber: 3.4 Consensus size: 168
15510314 CTGGTTCAGT
**
15510324 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGAT
1 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCCCAG-T
* * * *
15510389 CGGATCGAGGGTTGTGGCAGCAGGACCAACAGCAAGATCGGCAGCATGCAG-GGGGGATCGGG-T
65 CAGACCGAGGGTTGTGGCAGCAGGACCGA-AGCAAGATC-GCAGCACGCAGAGGGGGATCGGGCT
* *
15510452 CGATCCTCGACTTGCGCATTCTGCCTCTTCGACCGACTGAGC
128 -GATCCACGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * ** * * * *
15510494 GCCTGCACGCTCAATTCATGGGTTGGCTTAGGCATACGGAGTTCATTTC-ATGTCTAAGCCCTAG
1 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTA-GTCTAAGCCC-AG
* * * *
15510558 TCAGACAGAGGGTTGTGGCAGCAGGTTCAGAAGCAAGATCGACAGCACGCAGAGGGGGATCGAGC
64 TCAGACCGAGGGTTGTGGCAGCAGG-ACCGAAGCAAGATCG-CAGCACGCAGAGGGGGATCGGGC
* * * * * * *
15510623 TGATCCATGGCTTGCACATTCTACCTCTCTGGCCTACTGAGC
127 TGATCCACGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * *
15510665 ACCCGCACGCTCGTTTGGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-ATGTCTAAGCCCAGT
1 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTA-GTCTAAGCCCAGT
* ** * * ** *
15510729 CAGACCGAGGGTTATGGCAGCAGGACCGATAGCGGGATCAGTAGCACACAGAGAAGGACCGGGCT
65 CAGACCGAGGGTTGTGGCAGCAGGACCGA-AGCAAGATC-GCAGCACGCAGAGGGGGATCGGGCT
* ** * * * * *
15510794 GATCCCCGACAAGTGCATTATGCCTCTCCAACCGACTGGGT
128 GATCCACGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* *
15510835 GCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATACCTAGTCTAAGC
1 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGC
15510894 ATACGGAGTT
Statistics
Matches: 323, Mismatches: 68, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
169 5 0.02
170 216 0.67
171 101 0.31
172 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (168 bp):
GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCCCAGTC
AGACCGAGGGTTGTGGCAGCAGGACCGAAGCAAGATCGCAGCACGCAGAGGGGGATCGGGCTGAT
CCACGACTTGCGCATTCTGCCTCTCCGACCGACTGAGC
Found at i:15510916 original size:26 final size:26
Alignment explanation
Indices: 15510866--15510918 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15510856 GTTGACTTAG
* *
15510866 GCATACAGAGTTCATACCTAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
* *
15510892 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
15510918 G
1 G
15510919 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:15511464 original size:12 final size:12
Alignment explanation
Indices: 15511447--15511474 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15511437 TTACGACAGT
15511447 AAGACCAGTAGC
1 AAGACCAGTAGC
15511459 AAGACCAGTAGC
1 AAGACCAGTAGC
15511471 AAGA
1 AAGA
15511475 TCGATCGCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.21, G:0.25, T:0.07
Consensus pattern (12 bp):
AAGACCAGTAGC
Found at i:15511964 original size:154 final size:155
Alignment explanation
Indices: 15511677--15511977 Score: 399
Period size: 154 Copynumber: 1.9 Consensus size: 155
15511667 CAGGATCGAC
* * * * * *
15511677 AGCACGCAGGCGGATCGGGCTGATCCTCGTCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCC
1 AGCACACAGGCGGATCGGACCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGTTGAGCGCC
* *
15511742 CACATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAG
66 CACA-GCCCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAG
* *
15511807 ACCGAGGGTTGTGGCAGCGGGTCGGT
130 ACCGAAGGTTCTGGCAGCGGGTCGGT
* *
15511833 AGCACACAGGGGGATCGGACCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGTTGAGCGTC
1 AGCACACAGGCGGATCGGACCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGTTGAGCG-C
* * * * ** *
15511898 GCAC-GCTC-ATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCTAGTCGG
65 CCACAGCCCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAG
15511961 ACCGAAGGTTCTGGCAG
130 ACCGAAGGTTCTGGCAG
15511978 TAGGACCGAC
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
154 63 0.50
155 3 0.02
156 55 0.44
157 4 0.03
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (155 bp):
AGCACACAGGCGGATCGGACCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGTTGAGCGCC
CACAGCCCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
CCGAAGGTTCTGGCAGCGGGTCGGT
Found at i:15512458 original size:26 final size:26
Alignment explanation
Indices: 15512424--15512474 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15512414 TGACTTAGGC
*
15512424 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
15512450 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15512475 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:15513220 original size:26 final size:26
Alignment explanation
Indices: 15513184--15513236 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15513174 GTTGACTTTG
15513184 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGGAGTTCAAT-CCCAGTCTAA
15513210 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
15513236 G
1 G
15513237 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:15514364 original size:26 final size:26
Alignment explanation
Indices: 15514328--15514380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15514318 GTTGACTTAG
*
15514328 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15514354 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15514380 G
1 G
15514381 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15514714 original size:158 final size:158
Alignment explanation
Indices: 15514361--15514854 Score: 385
Period size: 158 Copynumber: 3.1 Consensus size: 158
15514351 TAAGCATACA
** * * *
15514361 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAGCAGGACCGACAGCACACA
* * * * *
15514426 GGGAGGACCGAGTCGATCCTCGACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGT
66 GGGAGGACCGAGGCGATCCTCGACTTGCGCATTATGCCTCTCTAGCCAGCTCAGCGCCCGCACCT
* * *
15514491 ACGTTTCGTGGGTTGGCTTGGGCATAGG
131 ACATTTCGTGGGTTGACTTAGGCATAGG
* ** * * * *
15514519 GAGTTCATT-CCATGTCTAA-TTCCCACCCGGATCGAGGGTTGTAGCAGCGGGACCGATAGCATA
1 GAGTTCATTCCCA-GTCTAAGATCAGA-TCGGATCGAGGGTTGTAGCAGCAGGACCGACAGCACA
* * * * *
15514582 CAGAGG-GGACCGGGGCGATCC-CTGGCTTGCGCATTATGCCTCTCTATCCGGCTCAGCGCTCGC
64 CAG-GGAGGACCGAGGCGATCCTC-GACTTGCGCATTATGCCTCTCTAGCCAGCTCAGCGCCCGC
* *
15514645 ACACT-CATTTCGTGGGTTGACTTATGCATATG
127 AC-CTACATTTCGTGGGTTGACTTAGGCATAGG
* * * * *
15514677 GAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGAGGGTTGT-GACAGTAGGATCAACAGCACG
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTGTAG-CAGCAGGACCGACAGCACA
* * * * * * * * *** *
15514740 TAGGGGGGATCGAGTCGATCC-CTGGCTTGTGCATTCTGCCTCTCTGGTTGGCTGAGCGCCCGTC
64 CAGGGAGGACCGAGGCGATCCTC-GACTTGCGCATTATGCCTCTCTAGCCAGCTCAGCGCCCG-C
* * * * *
15514804 -CGTTCGTTTCGTGGGTTGACTTACGCATACG
127 ACCTACATTTCGTGGGTTGACTTAGGCATAGG
* *
15514835 GAGTTCATACCCTGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
15514855 CATACAGAGT
Statistics
Matches: 267, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 14 0.05
158 243 0.91
159 10 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAGCAGGACCGACAGCACACA
GGGAGGACCGAGGCGATCCTCGACTTGCGCATTATGCCTCTCTAGCCAGCTCAGCGCCCGCACCT
ACATTTCGTGGGTTGACTTAGGCATAGG
Found at i:15514877 original size:26 final size:26
Alignment explanation
Indices: 15514828--15514880 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15514818 GTTGACTTAC
* *
15514828 GCATACGGAGTTCATACCCTGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
15514854 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
15514880 G
1 G
15514881 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:15514997 original size:184 final size:184
Alignment explanation
Indices: 15514677--15515071 Score: 485
Period size: 184 Copynumber: 2.1 Consensus size: 184
15514667 TATGCATATG
* *
15514677 GAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGACAGTAGGATCAACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGTGACAGCAGGATCAACAGCACGTA
** ** ** * *
15514742 GGGGGGATCGAGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGTTGGCTGAGCGCCCGTCCGT
66 GGGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCTGGCCGACTGAGCGCCCGTCCGC
* * *
15514807 TCGTTTCGTGGGTT-GACTTACGCATACGGAGTTCATACCCTGTCTAAGCATACA
131 TCGTTTCATGGGTTAG-CTTACGCATACAGAGTTCATACCATGTCTAAGCATACA
* * ***
15514861 GAGTTCATTCTCAGTCTAAGATCGGATCGGA-TCGAGGGTTGTGACAGCAGGATCGGTAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCGGATCGAACT-GAGGGTTGTGACAGCAGGATCAACAGCACGT
* *
15514925 AGGGGGGATTG-GGCTGATCCCCAGCTTGCACATTCTGCCTCT-TCGGCCGACTGAGCGCCCG-C
65 AGGGGGGATCGAGTC-GATCCCCAGCTTGCACATTCTGCCTCTCT-GGCCGACTGAGCGCCCGTC
* * * * *
15514987 ATGCTCGTTTCATGGGTTAGCTTAGGCATACAGTGTTCATTCCATGTCTAAGCATACG
128 -CGCTCGTTTCATGGGTTAGCTTACGCATACAGAGTTCATACCATGTCTAAGCATACA
15515045 GAGTTCATTCCCAGTCTAAGATCGGAT
1 GAGTTCATTCCCAGTCTAAGATCGGAT
15515072 TGGACCAAGG
Statistics
Matches: 180, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
183 5 0.03
184 174 0.97
185 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.27
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGTGACAGCAGGATCAACAGCACGTA
GGGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCTGGCCGACTGAGCGCCCGTCCGC
TCGTTTCATGGGTTAGCTTACGCATACAGAGTTCATACCATGTCTAAGCATACA
Found at i:15515042 original size:26 final size:26
Alignment explanation
Indices: 15515012--15515064 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15515002 GTTAGCTTAG
*
15515012 GCATACAGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15515038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15515064 G
1 G
15515065 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15525092 original size:26 final size:26
Alignment explanation
Indices: 15525056--15525107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15525046 TTGGCTTAGC
15525056 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
15525082 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
15525108 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:15525211 original size:184 final size:184
Alignment explanation
Indices: 15524999--15525647 Score: 656
Period size: 184 Copynumber: 3.5 Consensus size: 184
15524989 CGACTTACGT
* * * * * **
15524999 ATTCTACCTCTCCCACCGGCTGAGCGCCCCCTTGCTCGTTTTGTGGGTTGGCTTAGCCATACGAA
1 ATTCTACCTCTCCGACCGACTAAGCGCCCCCATGCTCATTTCATGGGTTGGCTTAGCCATACGAA
*
15525064 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTG
66 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTG
* * **
15525129 CAGCAGCAGGATCGGTAGCACATAGGGGGGATCGGGCCGATCCCCAGCTTGCAC
131 CAGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCTGATCCCCAGCTTGTGC
* * *
15525183 ATTCTACCTCTCCGATCGACTAAGCGCCCGCATGCTTATTTCATGGGTTGGCTTAGCCATACGAA
1 ATTCTACCTCTCCGACCGACTAAGCGCCCCCATGCTCATTTCATGGGTTGGCTTAGCCATACGAA
* * * * * * *
15525248 GTTCATTGCATGTCTAAGCATA-GGAAGTTCATTCTCAGTGTAAGATCCGACCGGATCAAGGGTT
66 GTTCATTCCATGTCTAAGCATACGG-AGTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTT
15525312 GCAGCAGCAGGACTAGCAGCAGGATCGATAGCACGTAGGAGGGGATCGGGCTGATCCCCAGCTTG
130 GCAGCAGCAGGA-T-----C--G---G-TAGCACGTAGG-GGGGATCGGGCTGATCCCCAGCTTG
15525377 TGC
182 TGC
* * * * * * * * **
15525380 ATTCTACCTCTCCGACTGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGTT
1 ATTCTACCTCTCCGACCGACTAAGCGCCCCCATGCTCATTTCATGGGTTGGCTTAGCCATACGAA
* * *
15525445 GTTCATCCCCA-GTCTAAGCATACAGAGTGCATTCCCAGTCTAAGATCAGATC-AGATCGAGGGT
66 GTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ATCGAGGGT
* * * * * ** *
15525508 TGCGGCAGCAGGATCGATAGCATGCAGGTGGGATCGGGCTGATCCCTGGCTTGTGT
129 TGCAGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCTGATCCCCAGCTTGTGC
* * ** * * * ** *
15525564 ATTCTACCTCTCCGGCCGACTAAGCGTCCGTACGCCCATTTCATGGGTTGGCTTAGGCATTGGGA
1 ATTCTACCTCTCCGACCGACTAAGCGCCCCCATGCTCATTTCATGGGTTGGCTTAGCCATACGAA
15525629 GTTCATTCCATGTCTAAGC
66 GTTCATTCCATGTCTAAGC
15525648 CCCAGTCGGA
Statistics
Matches: 380, Mismatches: 67, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
183 5 0.01
184 208 0.55
185 10 0.03
189 1 0.00
190 1 0.00
191 1 0.00
192 1 0.00
195 1 0.00
196 11 0.03
197 138 0.36
198 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
ATTCTACCTCTCCGACCGACTAAGCGCCCCCATGCTCATTTCATGGGTTGGCTTAGCCATACGAA
GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTG
CAGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCTGATCCCCAGCTTGTGC
Found at i:15525491 original size:197 final size:196
Alignment explanation
Indices: 15525130--15525520 Score: 500
Period size: 197 Copynumber: 2.0 Consensus size: 196
15525120 CGAGGGTTGC
*
15525130 AGCAGCAGGATCGGTAGCACATAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTACCTCTC
1 AGCAGCAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTACCTCTC
* * * **
15525195 CGATCGACTAAGCGCCCGCATGCTTATTTCATGGGTTGGCTTAGCCATACGAAGTTCATTGCATG
66 CGATCGACTAAGCACCCGCATGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCATCCCATG
* * * * * *
15525260 TCTAAGCATAGGAAGTTCATTCTCAGTGTAAGATCCGACCGGATCAAGGGTTGCAGCAGCAGGAC
131 TCTAAGCATAAGAAGTGCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGCAGCAGGAC
15525325 T
196 T
* * **
15525326 AGCAGCAGGATCGATAGCACGTAGGAGGGGATCGGGCTGATCCCCAGCTTGTGCATTCTACCTCT
1 AGCAGCAGGATCGATAGCACATAGG-GGGGATCGGGCCGATCCCCAGCTTGCACATTCTACCTCT
* * * * **
15525391 CCGA-CTGGCTGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGTTGTTCATCCCC
65 CCGATC-GACTAAGCACCCGCATGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCAT-CCC
* * *
15525455 A-GTCTAAGCATACAG-AGTGCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGCAGCA
128 ATGTCTAAGCATA-AGAAGTGCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGCAGCA
15525518 GGA
192 GGA
15525521 TCGATAGCAT
Statistics
Matches: 166, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
196 24 0.14
197 139 0.84
198 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (196 bp):
AGCAGCAGGATCGATAGCACATAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTACCTCTC
CGATCGACTAAGCACCCGCATGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCATCCCATG
TCTAAGCATAAGAAGTGCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGCAGCAGGAC
T
Found at i:15525973 original size:26 final size:26
Alignment explanation
Indices: 15525937--15525989 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15525927 GTTGGCTTAG
*
15525937 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
*
15525963 GCATACGAAGTTCATTCCCCGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
15525989 G
1 G
15525990 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACGTCTAA
Found at i:15526727 original size:26 final size:26
Alignment explanation
Indices: 15526697--15526749 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15526687 GTTGGCTTAG
15526697 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
* *
15526723 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15526749 G
1 G
15526750 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15527106 original size:159 final size:157
Alignment explanation
Indices: 15526723--15527232 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 157
15526713 CCATGTCTAA
* * * *
15526723 GCATATGGAGTTCATTCC-TAGTCTAAGATCGAACCAAACCGAAGGTTGCGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* ** * * * *
15526787 AGCAC-GCAGGGGAAATGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCAGTTGAGTGC
65 AGCACAG-AGGGGGACCGGGACGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGTGC
* *
15526851 CCGCATGCTCATTTCGTTGGTTGGCTTAG
129 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
** * ** * ** * * * * *
15526880 GTGTACAGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCAAGGGATGTGGCAGCGGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATC-GGC
* * * ** * *
15526944 AGCACATAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTG
65 AGCAC--AGAGGGGGACCGGGACGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGTG
* *
15527009 CCCGCATGCTCGTTTTGTGGGTTGACTTAG
128 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* *
15527039 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
**
15527103 AGCAC-GCAGGAGGGACC-GGACTGATCCCTAGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGT
65 AGCACAG-AGG-GGGACCGGGAC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGT
*
15527166 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAT
127 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* *
15527197 CCATACGAAGTTCATTCCATGTCTAAGCATACGAAC
1 GCATACGGAGTTCATTCCATGTCTAAG-AT-CGAAC
15527233 TTCATTCCCA
Statistics
Matches: 277, Mismatches: 63, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 57 0.21
158 89 0.32
159 119 0.43
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACAGAGGGGGACCGGGACGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGTGCCC
GCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15527236 original size:26 final size:26
Alignment explanation
Indices: 15527198--15527249 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15527188 TTGGCTTATC
*
15527198 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAACTTCATTCCCA-GTCTAAG
15527224 CATACGAACTTCATTCCCAGTCTAAG
1 CATACGAACTTCATTCCCAGTCTAAG
15527250 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACGAACTTCATTCCCAGTCTAAG
Found at i:15527424 original size:26 final size:26
Alignment explanation
Indices: 15527394--15527446 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15527384 TTTGACGTAG
* *
15527394 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
* *
15527420 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
15527446 G
1 G
15527447 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAGTCTAA
Found at i:15527467 original size:197 final size:192
Alignment explanation
Indices: 15527090--15527605 Score: 507
Period size: 197 Copynumber: 2.7 Consensus size: 192
15527080 AGGGTTGCGA
* * * * * *
15527090 CAGCAGGATCGACAGCACGCAGGAGGGACCGGACTGATCCCTAGCTTGCGCATTCTGCCTCTTCG
1 CAGCAGGATAGACAGCACGCAGGAGGGACAGGTC-GATCCCCAGCTTGTGCATTCTGCCTCTCCG
* * ** * ** * *
15527155 ACCGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTATCCATACGAAGTTCATTCCATGTC
65 ATCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGAAGTTCATCCCATGTC
* * *
15527220 TAAGCATACGAACTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCAGGACT
130 TAAGCATACGAACTGCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGA-T
* *
15527284 AGCAGCAGGATAGACAGCACGCAGGGAGGGATCGGGTCGATCCCCAGTTTGTGCATTCTGCCTCT
1 --CAGCAGGATAGACAGCACGCA-GGAGGGA-CAGGTCGATCCCCAGCTTGTGCATTCTGCCTCT
* * * *
15527349 CCGATCGGCTGAGCACCCGCATGCGCGTTTCATGGTTTGACGTAGGCATATAG-AGTTCATCCCC
62 CCGATCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATA-AGAAGTTCAT-CCC
* * * * * *
15527413 A-GTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAG
125 ATGTCTAAGCATACGAACTGCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAG
15527477 GAT
190 GAT
* * * *
15527480 ---C--GATAG---G-ACGCAGGTGGGACCAGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCG
1 CAGCAGGATAGACAGCACGCAGGAGGGA-CAGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCG
* * ** *
15527536 ATCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCAT-AGGGGATTCATTCCATGT
65 ATCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGAAG-TTCATCCCATGT
15527600 CTAAGC
129 CTAAGC
15527606 CCCAGTCGGA
Statistics
Matches: 269, Mismatches: 44, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
182 2 0.01
183 4 0.01
184 90 0.33
185 5 0.02
186 1 0.00
189 5 0.02
191 1 0.00
196 21 0.08
197 132 0.49
198 8 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (192 bp):
CAGCAGGATAGACAGCACGCAGGAGGGACAGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGA
TCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAAGAAGTTCATCCCATGTCT
AAGCATACGAACTGCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGAT
Found at i:15527909 original size:157 final size:157
Alignment explanation
Indices: 15527420--15527921 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 157
15527410 CCCAGTCTAA
* * * **
15527420 GCATACGGAGTGCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGATA
* * * * *
15527485 GGACGCAGGTGGGACC-AGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAGCAC
66 GCACGCAGGGGGGACCGA-GTCGATCCCCGGCTTGCGCA-TCTACCTCTCCGATCGGCTGAGCGC
* *
15527549 CCACACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
15527578 GCATA-GGGGATTCATT-CCATGTCTAAGCCCCAG-TCGGACCG-AGGTTGTGGCTGCGGGATCG
1 GCATACGGAG-TTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCG
* * * * * * *
15527639 ACAGCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGGGCAT-TATGCCTCTTCGGTCGACTCA
63 ATAGCACGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATCTA--CCTCTCCGATCGGCTGA
* * *
15527703 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
15527736 GTGTATGGAGTTCATTCTCAGTCTAAGGTCAGACCGGACCGAAGGATGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGATA
** * * *
15527801 GCACGCAGGGGGGACCGAACCAATCCCCTGCTTGCGCATCTACCTCTCCGACCGGCTGAGCGCCC
66 GCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATCTACCTCTCCGATCGGCTGAGCGCCC
* * *
15527866 GTACCCTCATTTCGTGGGTTGGCTTAG
131 GCACGCTCGTTTCGTGGGTTGGCTTAG
* *
15527893 GCATACAGAGTTCATTCCCCGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
15527922 TTTGAGCCAC
Statistics
Matches: 268, Mismatches: 64, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 94 0.35
158 135 0.50
159 37 0.14
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATCTACCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15528666 original size:26 final size:26
Alignment explanation
Indices: 15528636--15528688 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15528626 GTTGGCTTAG
15528636 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15528662 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15528688 G
1 G
15528689 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15529563 original size:26 final size:26
Alignment explanation
Indices: 15529514--15529566 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15529504 GGTTGGCTAG
* *
15529514 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTACATGTCTAA
15529540 GCATACAAAGTTCATTTACA-GTCTAA
1 GCATACAAAGTTCA-TTACATGTCTAA
15529566 G
1 G
15529567 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTACATGTCTAA
Found at i:15529926 original size:26 final size:26
Alignment explanation
Indices: 15529896--15529948 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15529886 GTAGACTTAG
15529896 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
15529922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15529948 G
1 G
15529949 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15530369 original size:885 final size:870
Alignment explanation
Indices: 15528254--15530454 Score: 2375
Period size: 878 Copynumber: 2.5 Consensus size: 870
15528244 GCTGATCCTC
* * * *
15528254 GGCTTGTGCATTCTGCCTCTCAGGCTAGCTGAGCGCCCGCACGCCCGTTTC-ATGGGTTGGCTTA
1 GGCTTGCGCATTCTGCCTCTCCGGCGA-CTGAGAGCCCGCACGCCCGTTTCGA-GGGTTGGCTTA
* * *
15528318 GGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGCGGGA-CTGA
64 GGCATAGGAAGTTCATTCCATGTCTAAG-CCCAGCCGGACTGAGGGTTGTGGTAGCGGGATC-GA
* * * * * **
15528382 CAGCACACAGATGGGGACC-GAGTCGATCCCTGGCTTACGCATTATGCCTC-CCCGGTCGGCTCA
127 CAGCACGCAGAGGGGGACCGGA-TCGATCCCCGGCTTGCGCATTATGCCTCTCTCGACCGGCTCA
** * *
15528445 GTGCCC-CTACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCTCAGTCCAAGATCG
191 --GCCCAC-ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
15528509 GATCAGACCGAAGGTTAAGGCAGCAGGATTGACAGCACGCAGGGGGGATTGGGTCGATCCCCGGC
253 GACCAGACCGAGGGTT--TGCAGTAGGATTGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGC
* * * * *
15528574 TTGCACATTTTGCCTCTCCGG-TTGGCTGAGCGCCCACACCCTCGTTTCATGGGTTGGCTTAGGC
316 TTGCACATTTTGCCTCTCTGGCCT-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
** * *
15528638 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTG
380 ATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCACAGTCTAAGATCAGACCGAACCG
* * *
15528703 AGGGTTGCGGCAGTAGGACTAACAGCAGGATCGACAGCACACAGGGGGGGACCGAGCTGATCCCC
445 AGGGTTGCGGCAGCAAGACCAACAGCAGGATCGACAGCACACAGGGGGGGACCGAGCTGATCCCC
* **
15528768 GACTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAG
510 GACTTACGCATTCTACCTCTCCAACCAGCTGAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAG
* * * *
15528833 GCATACGGAGTTCATTCCATGTCTAAGCCCCACCCGAACCAAGGGTTGTGGTAGTAGGACCAACA
575 GCATACAGAGTTCATTCCATGTCTAAGCCCCACCAGAACCAAGGGTTGTGGCAGCAGGACCAACA
* * * * ** * *
15528898 TCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTACGCATCTCCGGCCAGCT
640 TCGGCAACACACAAAAGGGGACCGGGCCGATCCCCAGCTTGCACATTACGCATCTCCGACCAGCC
** *
15528963 TCTCCGGCTTACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCG
705 TCTCCGGCCGACTGAGCGCCCGCACACTCGTTTCATGGGTAGACTTAAGCATACGGAGTTCATCG
** * *
15529028 GTAGTCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTACGGGTAGCA
770 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTA-GGGCAGCA
*
15529093 GGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCC
834 GGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCA
* * * * * ** * * *
15529130 GACTTGCGCATTCTGCCTCTCCGACCGGCTGAAATCCCGCACGTTCATTTTGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCG-GCGACTGAGAGCCCGCACGCCCGTTTCGAGGGTTGGCTTAG
* * ** * *
15529195 GCATACGAAGTTCATTCCATGTCTATGCCGCAGTTGGACTGAGGGTAATATGGTAACGGGATCGA
65 GCATAGGAAGTTCATTCCATGTCTAAGCC-CAGCCGGACTGAGGGT--TGTGGTAGCGGGATCGA
* * * * * * ** *
15529260 TAGCATGCAGAGAGGGATCGGGTCGATCCCCGGTTTGTTTCATTATGCCTATCTC-ACCGGCTCA
127 CAGCACGCAGAGGGGGACCGGATCGATCCCCGGCTTG-CGCATTATGCCTCTCTCGACCGGCTC-
15529324 ATGCCCACACGCTCATTTCG-GGGTTGACTTAGGCATACGGAGTTC--TCCCAGTCTAAGATCGG
190 A-GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * * * * ** * * * * *
15529386 ACTGGATCGAGAGTTTACGGTAGCAAGATTGACAAAATGTAGGGTGGGATCGCGGCCAATCCTCG
254 ACCAGACCGAGGGTTTGCAGTAG---GATTGACAGCACGCAGGG-GGGATCG-GGTCGATCCCCG
* * * * *
15529451 GCTTACACATTCTGTCTCT-TCGACC-GACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGC-TA
314 GCTTGCACATTTTGCCTCTCT-GGCCTG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * * *
15529513 GGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATTTACAGTCTAAGATCGGACCGGA
377 GGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCACAGTCTAAGATCAGACCGAA
* * * * *
15529578 CCGAGGGTTGCGGTAGCAAGACCAACAGTAGGATC-AGTAGCACACAGGTGGGGACCGGGCTGAT
442 CCGAGGGTTGCGGCAGCAAGACCAACAGCAGGATCGA-CAGCACACAGGGGGGGACCGAGCTGAT
* * * * * * * * *
15529642 CCTCGACTTACGTATTTTGCCTCTCCAACCGGTTGAGCGCCCGTACGTTCGTTTCGTGGGTTGGC
506 CCCCGACTTACGCATTCTACCTCTCCAACCAGCTGAGCGCCCGCACGCTCGATTCGTGGGTTGGC
*
15529707 TTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGGGTTGTGGCAGCAGGAT
571 TTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA-CCAGAACCAAGGGTTGTGGCAGCAGGA-
* * * * *
15529771 CGACAGTGAGATCGGCAACACACAAAAGGGGATCGGGCTGATCCCCAGCTTGCACATTATGCCTC
634 C--CA---ACATCGGCAACACACAAAAGGGGACCGGGCCGATCCCCAGCTTGCACATTACGCATC
* * * * * *
15529836 TCTGACCGGCCTCTCCGGCCGGCTGAGCGCCCCGCACGCTTGTTTCATGGGTAGACTTAGGCATA
694 TCCGACCAGCCTCTCCGGCCGACTGAGCG-CCCGCACACTCGTTTCATGGGTAGACTTAAGCATA
* * *
15529901 CGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
758 CGGAGTTCATCGCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-G
* * * *
15529966 GTT-GTGGCAGCAGGATTGATAGCACGCAGGGGGGACC-GAGTCGATCCCA
822 GTTAG-GGCAGCAGGATCGACAGCACGCAGGGGGGACCAG-GCCAATCCCA
*
15530015 GGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGGGCCCGCACGCCCGTTTCGAGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGG-CGACTGAGAGCCCGCACGCCCGTTTCGAGGGTTGGCTTAG
* * *
15530080 GCATAGGAAGTTCATTCCATGTCTAAGTCCCAGCCGGACAGAGGGTTGTGGCAGCGGGATCGGCA
65 GCATAGGAAGTTCATTCCATGTCTAAG-CCCAGCCGGACTGAGGGTTGTGGTAGCGGGATCGACA
* * * * *
15530145 GCACGCAAAGGGGGACCGGACCGATCCCCGGCTTGCGCATTATGCCTCTTTCGACCAGCGCAGCA
129 GCACGCAGAGGGGGACCGGATCGATCCCCGGCTTGCGCATTATGCCTCTCTCGACCGGCTCAGC-
* * * ** *
15530210 CACGCACGGTCGTTTCGTGGGTTGACTTATACATACGGAGTTCATTCCCAGTCTAAGATTGGACC
193 C-CACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
15530275 AAACCGAGGGTTGCTGCTGTAGGATTGACAGCACACAGGGGCAGACCGGGTCGATCCCCTGGCTT
257 AGACCGAGGGTT--TGCAGTAGGATTGACAGCACGCAGGGG-GGATCGGGTCGATCCCC-GGCTT
** *
15530340 GCGTATTTTGCCTCTCTGGCCTGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
318 GCACATTTTGCCTCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
** * * *
15530405 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAATCCCAATCTAAGAT
383 CGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCACAGTCTAAGAT
15530455 TTTGAGCCAT
Statistics
Matches: 1069, Mismatches: 210, Indels: 82
0.79 0.15 0.06
Matches are distributed among these distances:
874 4 0.00
875 2 0.00
876 108 0.10
877 16 0.01
878 288 0.27
879 94 0.09
880 4 0.00
881 4 0.00
882 15 0.01
883 60 0.06
884 102 0.10
885 281 0.26
886 85 0.08
888 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (870 bp):
GGCTTGCGCATTCTGCCTCTCCGGCGACTGAGAGCCCGCACGCCCGTTTCGAGGGTTGGCTTAGG
CATAGGAAGTTCATTCCATGTCTAAGCCCAGCCGGACTGAGGGTTGTGGTAGCGGGATCGACAGC
ACGCAGAGGGGGACCGGATCGATCCCCGGCTTGCGCATTATGCCTCTCTCGACCGGCTCAGCCCA
CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTTGCAGTAGGATTGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTT
TGCCTCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCATACAAAGTTCATTCACAGTCTAAGATCAGACCGAACCGAGGGTTGCGGC
AGCAAGACCAACAGCAGGATCGACAGCACACAGGGGGGGACCGAGCTGATCCCCGACTTACGCAT
TCTACCTCTCCAACCAGCTGAGCGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATACAGAGT
TCATTCCATGTCTAAGCCCCACCAGAACCAAGGGTTGTGGCAGCAGGACCAACATCGGCAACACA
CAAAAGGGGACCGGGCCGATCCCCAGCTTGCACATTACGCATCTCCGACCAGCCTCTCCGGCCGA
CTGAGCGCCCGCACACTCGTTTCATGGGTAGACTTAAGCATACGGAGTTCATCGCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTAGGGCAGCAGGATCGACAGCA
CGCAGGGGGGACCAGGCCAATCCCA
Found at i:15530450 original size:26 final size:26
Alignment explanation
Indices: 15530400--15530452 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15530390 GTTGGCTTAG
* *
15530400 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
15530426 GCATACGGAGTTCAATCCCA-ATCTAA
1 GCATACGGAGTTC-ATCCCATATCTAA
15530452 G
1 G
15530453 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:15531152 original size:26 final size:26
Alignment explanation
Indices: 15531123--15531174 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15531113 TGACTTAGGC
15531123 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
*
15531149 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
15531175 TTAGACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:15531455 original size:159 final size:156
Alignment explanation
Indices: 15531154--15531648 Score: 498
Period size: 159 Copynumber: 3.1 Consensus size: 156
15531144 TAAGAATACG
** * * * ** * *
15531154 GAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTTGCAACAGCAGGATCGGCAGCACGC-
1 GAGTTCATT-CCAGTCTAAGACCAGATCGGACCGAGGGTTGCTGCAACAGGACCGGCAGCACGCA
* * * *
15531218 AGGGGGTACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGAACG
65 AAGGGG-ACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACG
15531283 -TCAGTTTCGTGGGTTGGCTTAGGCATAA
129 CTCA-TTTCGTGGGTTGGCTTAGGCATAA
* * *
15531311 GGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTT-TTGGCAACGGGACCGGCAGCAC
1 -GAGTTCATTCCA-GTCTAAG-ACCAGATCGGACCGAGGGTTGCT-GCAACAGGACCGGCAGCAC
* * * **
15531374 GCAAAAGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCGC
62 GC-AAAGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGC
* * *
15531439 ACGCTCATTTCATGGGTTGACTTAGACATACA
126 ACGCTCATTTCGTGGGTTGGCTTAGGCATA-A
* * * * *
15531471 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCTGCAGCAGGATCGACAGCACGCA
1 GAGTTCATT-CCAGTCTAAGACCAGATCGGACCGAGGGTTGCTGCAACAGGACCGGCAGCACGCA
* * * * *
15531536 GAAGGGGACCGAGGACGATCCCTGGCTTGCGCA-TCTGCCTCTCCAGCCTGCTGAGTGCCCACAA
65 -AAGGGGACCG-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCAC
*
15531600 GCTCATTTTGTGGGTTGGCTTAGGCATACCA
128 GCTCATTTCGTGGGTTGGCTTAGGCATA--A
15531631 -AGTTCATTCCACGTCTAA
1 GAGTTCATTCCA-GTCTAA
15531649 CCATACCAAG
Statistics
Matches: 277, Mismatches: 46, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
157 3 0.01
158 51 0.18
159 189 0.68
160 34 0.12
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (156 bp):
GAGTTCATTCCAGTCTAAGACCAGATCGGACCGAGGGTTGCTGCAACAGGACCGGCAGCACGCAA
AGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATAA
Found at i:15531660 original size:26 final size:26
Alignment explanation
Indices: 15531624--15531674 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15531614 TTGGCTTAGG
15531624 CATACCAAGTTCATT-CCACGTCTAAC
1 CATACCAAGTTCATTCCCA-GTCTAAC
15531650 CATACCAAGTTCATTCCCAGTCTAA
1 CATACCAAGTTCATTCCCAGTCTAA
15531675 GATCAGATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.27
Consensus pattern (26 bp):
CATACCAAGTTCATTCCCAGTCTAAC
Found at i:15532850 original size:158 final size:157
Alignment explanation
Indices: 15532657--15532951 Score: 383
Period size: 158 Copynumber: 1.9 Consensus size: 157
15532647 TGAGGGATGC
* * *
15532657 GGCAGTAGGATCGACAGCATACAGGGGGGACCGGGCCAATCCCTAGCTTACGCATTCTGCCTCTC
1 GGCAGTAGGACCGACAGCATACAGGGGGGACCGGGCCAATCCCCAGCTTACGCATTCTGCCACTC
* * *
15532722 CGGTCGATTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATG
66 CGGTCGACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATG
15532787 CCTAAGCCCTAGCTGGACTGAGGTTGT
131 CCTAAGCCCTAGCTGGACTGAGGTTGT
* ** * * * * *
15532814 GGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCACT
1 GGCAGTAGGACCGACAGCATACAG-GGGGGACCGGGCCAATCCCCAGCTTACGCATTCTGCCACT
* *** * * *
15532879 CCGGTCGGCTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
65 CCGGTCGACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCAT
*
15532944 GTCTAAGC
130 GCCTAAGC
15532952 ATACAGAGTT
Statistics
Matches: 115, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
157 20 0.17
158 95 0.83
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GGCAGTAGGACCGACAGCATACAGGGGGGACCGGGCCAATCCCCAGCTTACGCATTCTGCCACTC
CGGTCGACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATG
CCTAAGCCCTAGCTGGACTGAGGTTGT
Found at i:15532954 original size:26 final size:25
Alignment explanation
Indices: 15532924--15532975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
15532914 GTTGGCTTAG
15532924 GCATAC-GAAGTTCATTCCATGTCTAA
1 GCATACAG-AGTTCATTCCA-GTCTAA
15532950 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
15532975 G
1 G
15532976 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 17 0.68
27 1 0.04
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:15533684 original size:26 final size:26
Alignment explanation
Indices: 15533647--15533699 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15533637 GTTGACTTAG
*
15533647 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15533673 GCATAC-GAAGTTCCTTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
15533699 G
1 G
15533700 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15533964 original size:159 final size:160
Alignment explanation
Indices: 15533710--15534835 Score: 734
Period size: 159 Copynumber: 6.9 Consensus size: 160
15533700 ATCGGACCGA
* * ** * * * *
15533710 ACCGAGGGTTACGGCAGCAGGATCAAC-AGTACACAG-GGGGTATCGGGCCGATCCCCGGCTTGC
1 ACCGAGGGTTGCGGCAGTAGGATCGGCAAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTAC
* * * * * * *
15533773 GCATTCCGTCTCTCCGG-CTGGCTGAACACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
66 GCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
15533837 GGAGTTCATTCCATGTCTAAGCCCTAG-CCGG
130 GGAGTTCATTCCATGTCTAAGCCC-AGATCGG
* * * * * *
15533868 ACCGAGGGTTGTGGCAGT-GAGACCGGTAA-CACATAGAGGGGGACCGGGCCGATCCTCGGCTTG
1 ACCGAGGGTTGCGGCAGTAG-GATCGGCAAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTA
* * *
15533931 CGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGGCATAC
65 CGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * ** *
15533996 GGAGTTCATTCCCA-ATCTACGATCGGATCGG
130 GGAGTTCATT-CCATGTCTAAGCCCAGATCGG
** * * * * * *
15534027 AATGAGGGTTGCGGTAGCAGGATCGACAAGCACACAG-GGGGGACCGTGCCGGTCCCCAGCTTAC
1 ACCGAGGGTTGCGGCAGTAGGATCGGCAAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTAC
* * *
15534091 GCATTCTGCCTCTCCAGTCGGCTAAG-GACCCACACGCTCGTTTCGTGGGTT-AGCTTAGGCATA
66 GCATTCTGCCTCTCCGGTCGGCTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATA
15534154 CGGAGTTCATTCCATGTCTAAGCCCCAG-TCGG
129 CGGAGTTCATTCCATGTCTAAG-CCCAGATCGG
* * * * * * *
15534186 ACCGTGGGTTGTGGCAGTAGGACCGACAGTAGGATCGGTAGCATACAGAGGGGGGCCAGGCTGAT
1 ACCGAGGGTTGCGGCAGTAGGATCGGCA--A-G--C---A-C--ACAGAGGGGGACCGGGCCGAT
* * * *
15534251 CCTCAGCTTATGCATTATGCCTCTTCGGCCGGCCTCTCCGTTCAGCTGAGCGCCCGCACGCTCGT
55 CCCCGGCTTACGCATTCTGCCTC-T---CCGG----T-CG----GCTGAGCGCCCGCACGCTCGT
** * * * ** *
15534316 TTCCAGGGTTAACTTCGGCATACGGAGTTCA-TCCTTAGTCTAAGATCGGA-CTGG
107 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGATC-GG
* ** ** * * *
15534370 ACTGAGGGTTGCATCAGTAGGATCGGC-AGCATGCA-AGGGGGACAGGGCCAATCCCCGGGTTAC
1 ACCGAGGGTTGCGGCAGTAGGATCGGCAAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTAC
* ** * * * *
15534433 GCATTCTGGCTCTCCGG-CTAACTGAGCGCCCTCACGCCCGTTTCGTGGGTTGACTTAGGCAGAG
66 GCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
15534497 GGAGTTCATTCCATGTCTAAGCCCCAG-TCGG
130 GGAGTTCATTCCATGTCTAAG-CCCAGATCGG
* * * * * * * *
15534528 ACTGAGGGTTGTGGCAGTAGGATCGGC-AGCACGCAGAAGGGGATCAGGCCGATCCCTGGCTTGC
1 ACCGAGGGTTGCGGCAGTAGGATCGGCAAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTAC
* * * * ** * * * *
15534592 GCATTATACCTCTTCGGTCGGCTCAAAGCTCGCACGCTCGTTTCGTGGGTTGCCTTACGTATACG
66 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
**
15534657 GAGTTCATTCCCA-GTCTAAGATCAGATCGG
131 GAGTTCATT-CCATGTCTAAGCCCAGATCGG
* * * * * * **
15534687 ACCGAGGGTTGCAGTAGCAAGAT-GG-ACAGCACGTA-AG-GGGGGATCGAGCCGATCCCTAGCT
1 ACCGAGGGTTGCGGCAGTAGGATCGGCA-AGCAC--ACAGAGGGGGACCGGGCCGATCCCCGGCT
* ** * * * *
15534748 TACGCATTCTGCCTCTTCGGTC-ATTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGTAT
63 TACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
15534812 ACAGAGTTCATTCCATGTCTAAGC
128 ACGGAGTTCATTCCATGTCTAAGC
15534836 TTATGGAGTT
Statistics
Matches: 746, Mismatches: 167, Indels: 110
0.73 0.16 0.11
Matches are distributed among these distances:
157 4 0.01
158 168 0.23
159 386 0.52
160 19 0.03
161 2 0.00
162 1 0.00
164 1 0.00
167 5 0.01
168 1 0.00
170 5 0.01
171 60 0.08
172 3 0.00
175 4 0.01
178 1 0.00
179 1 0.00
180 3 0.00
181 1 0.00
183 7 0.01
184 72 0.10
185 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (160 bp):
ACCGAGGGTTGCGGCAGTAGGATCGGCAAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTAC
GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCAGATCGG
Found at i:15535200 original size:26 final size:26
Alignment explanation
Indices: 15535164--15535216 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15535154 GTTGGCTTAG
*
15535164 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15535190 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15535216 G
1 G
15535217 ATCGGGTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15535583 original size:26 final size:26
Alignment explanation
Indices: 15535531--15535583 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15535521 GTTGACTTAG
* * *
15535531 GCATATGGAGTTCATCCCCAGTGTAA
1 GCATATAGAGTTCATCCCCAATCTAA
*
15535557 GCATATAGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
15535583 G
1 G
15535584 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAATCTAA
Found at i:15536279 original size:26 final size:26
Alignment explanation
Indices: 15536231--15536283 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15536221 GTTGACTTAG
**
15536231 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* *
15536257 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
15536283 G
1 G
15536284 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:15536451 original size:26 final size:26
Alignment explanation
Indices: 15536415--15536467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15536405 GTTGGCTTAG
*
15536415 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15536441 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15536467 G
1 G
15536468 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15536537 original size:184 final size:181
Alignment explanation
Indices: 15536127--15536626 Score: 540
Period size: 184 Copynumber: 2.7 Consensus size: 181
15536117 GGACCAACAC
* * *
15536127 CAGGATCGGTAGCACGCAGGGGGGGATTGGGCGGATCCCCGGCTTGCGCATTCTACCT-TTTCGA
1 CAGGATCGATAGCACGCA-GGGGGGA-TGGGCGGATCCCCAGCTTGCGCATTCTACCTCTCT-GA
* * * * *
15536191 CCGGTTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTA
63 CC-GCTGAGCCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
15536256 AGCATACGGAGTGCATTCCTAGTCTAAGATCGAACCGGACTGAGGGTTACAGCAG
127 AGCATACAGAGTGCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACAGCAG
* ** ** * * *
15536311 CAGGATC-AGTAGCATGCAATGGGGATCGGGCTAATCCCCAGCTTACGTATTCTATCTCTCTGAC
1 CAGGATCGA-TAGCACGCAGGGGGGAT-GGGCGGATCCCCAGCTTGCGCATTCTACCTCTCTGAC
15536375 CAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
64 C-GCTGAGC-CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * *
15536440 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAG
127 AGCATACAGAGTGCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACAGCAG
* * * *
15536495 CAGGATCGATAGCACGCAGGGGGGACTGGGTC-GATTCCCAGCTTGCGCATTTTACCTCTCCGAT
1 CAGGATCGATAGCACGCAGGGGGGA-TGGG-CGGATCCCCAGCTTGCGCATTCTACCTCTCTGAC
* ** * * * *
15536559 CGACTGATCGCCCGCACGCCAATTTTGTTGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCT
64 CG-CTGAGC-CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCT
15536623 AAGC
126 AAGC
15536627 CCAAGTCGGA
Statistics
Matches: 263, Mismatches: 44, Indels: 18
0.81 0.14 0.06
Matches are distributed among these distances:
182 1 0.00
183 43 0.16
184 216 0.82
185 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (181 bp):
CAGGATCGATAGCACGCAGGGGGGATGGGCGGATCCCCAGCTTGCGCATTCTACCTCTCTGACCG
CTGAGCCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACAGAGTGCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACAGCAG
Found at i:15537134 original size:25 final size:25
Alignment explanation
Indices: 15537083--15537134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
15537073 GTTGACGTAG
15537083 GCATACGGAGTTCTTCCCCAGTCTAA
1 GCATACGGAGTTCTT-CCCAGTCTAA
15537109 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTC-TTCCCAGTCTAA
15537134 G
1 G
15537135 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.40
26 13 0.52
27 2 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCTTCCCAGTCTAA
Found at i:15537464 original size:26 final size:26
Alignment explanation
Indices: 15537425--15537477 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15537415 TTTGGCTTAG
* *
15537425 GCATACGGATTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15537451 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15537477 G
1 G
15537478 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15538795 original size:171 final size:168
Alignment explanation
Indices: 15538420--15538974 Score: 623
Period size: 170 Copynumber: 3.3 Consensus size: 168
15538410 TGGTTCAGTG
* * **
15538420 CCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TTCCTAGTCTAAGATCAGAT
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCAT-GTCTAAGCCCAG-T
* * *
15538484 CGA-ATTGAGGGTTGTGGCAGTAGGACCAGCAGCAAGATCGGCAGCACGCAG-GGGGGATTGGGT
64 CGACA--GAGGGTTGTGGCAGCAGGA-CAGAAGCAAGATCGGCAGCACGCAGAGGGGGATCGGGT
* * * *
15538547 CGATCCTCGACCTGCGCATTCTGCCTCTCCGACTGACTGAGCG
126 TGATCCTCGACATGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * * *
15538590 CCCGCACGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCTAGTC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCATGTCTAAGCCC-AGTC
* * *
15538655 AGACAGAGGGTTGTGGCAGCAGGATCGGAAGCAAGATCGGCAGCACGTAGAGGGGGATCGAGTTG
65 -GACAGAGGGTTGTGGCAGCAGGA-CAGAAGCAAGATCGGCAGCACGCAGAGGGGGATCGGGTTG
* * * * * *
15538720 ATCCACGGCTTGCGCATTCTGCCTCTCTGGCCCACTGAGCA
128 ATCCTCGACATGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * * *
15538761 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGCCG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCAGTC-
* * ** * * * *
15538826 GACCGAGGGTTGTGGCAGCAGGACCGATAGCGGGATCAGCAGCACACAGAGGAGGATCGGGCTGA
65 GACAGAGGGTTGTGGCAGCAGGACAGA-AGCAAGATCGGCAGCACGCAGAGGGGGATCGGGTTGA
* * * *
15538891 TCCTCGACAAGCGTATTATGCCTC-CCGACCGATTGAGCA
129 TCCTCGACATGCGCATTCTGCCTCTCCGACCGACTGAGCA
*
15538930 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
15538975 ACCTAGTCTA
Statistics
Matches: 325, Mismatches: 54, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
169 56 0.17
170 161 0.50
171 107 0.33
172 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (168 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCAGTCG
ACAGAGGGTTGTGGCAGCAGGACAGAAGCAAGATCGGCAGCACGCAGAGGGGGATCGGGTTGATC
CTCGACATGCGCATTCTGCCTCTCCGACCGACTGAGCA
Found at i:15538996 original size:26 final size:26
Alignment explanation
Indices: 15538960--15539012 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15538950 GTTGACTTAG
*
15538960 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
15538986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
15539012 G
1 G
15539013 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:15540073 original size:156 final size:157
Alignment explanation
Indices: 15539771--15540078 Score: 467
Period size: 156 Copynumber: 2.0 Consensus size: 157
15539761 CAGGATCGAC
* *
15539771 AGCACGCAGGCGGGATCGGGCTGATCCTCGGCTTACGCATTCTACCTCTCCGATCGGTTGAGCAC
1 AGCACGCAGGCGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGTTGAGCAC
* * * *
15539836 CCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTA
66 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCTA
*
15539901 GACCGAAGGTTGTGGCAACAGGTCGGT
131 GACCGAAGGTTCTGGCAACAGGTCGGT
* * *
15539928 AGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCA-
1 AGCACGCAGGCGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGTTGAGCAC
* * *
15539992 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTTCATGTCTAAGCCCTAG-TC
66 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCT-
*
15540056 AGACCGAAGGTTCTGGCAGCAGG
130 AGACCGAAGGTTCTGGCAACAGG
15540079 ATCGACAGCG
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
155 1 0.01
156 76 0.56
157 59 0.43
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGCGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGTTGAGCAC
CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCTA
GACCGAAGGTTCTGGCAACAGGTCGGT
Found at i:15540535 original size:159 final size:159
Alignment explanation
Indices: 15540210--15540704 Score: 498
Period size: 159 Copynumber: 3.1 Consensus size: 159
15540200 AAGCATACAA
** * * *
15540210 AGTTCATTCC-TAGTCTAAGACCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
1 AGTTCATTCCAT-GTCTAAGACCCAACCGGACCGAGGGTTACGGTAGCAGGACCGACAGCACGCA
* * * * * * * * ** * ** * *
15540274 TG-GGGGATCGAGTCGGTCCCTGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACG
65 GGAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAATGCCCGAATG
* * * *
15540338 CCCGTTTCGTGGGTTGGCTTAGGCATATGG
130 CTCATTTCATGGGTTGGCTTAGGCATACGG
* * *
15540368 AGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGCGGTAGCAGGACCGACAGCACGCA-
1 AGTTCATTCCATGTCTAAGACCCAACCGGACCGAGGGTTACGGTAGCAGGACCGACAGCACGCAG
* *
15540432 GAGAGGGA-CTGGGCCTATCCCC-AGCTTGCGCATTATGCCTCTCCGACCGGCTCAATGCCCGAA
66 GAG-GGGATC-GGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGACCGACTCAATGCCCGAA
*
15540495 TGCTCATTTCATGGGTTGACTTAGGCATACGG
128 TGCTCATTTCATGGGTTGGCTTAGGCATACGG
* * ** * *
15540527 AGTTCATTCCCA-GTCTCAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCA
1 AGTTCATT-CCATGTCTAAGACCCAACCGGACCGAGGGTTACGGTAGCAGGACCGACAGCACGCA
* * * * * *
15540591 GGAGGGGATCGGGCCGGTCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCGCATG
65 GGAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAATGCCCGAATG
* *
15540656 CTCGTTTCATGGGTTGGCTTAGGCATACGA
130 CTCATTTCATGGGTTGGCTTAGGCATACGG
*
15540686 AGTTGATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
15540705 TATACAAAGT
Statistics
Matches: 278, Mismatches: 49, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
157 1 0.00
158 61 0.22
159 208 0.75
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGACCCAACCGGACCGAGGGTTACGGTAGCAGGACCGACAGCACGCAG
GAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAATGCCCGAATGC
TCATTTCATGGGTTGGCTTAGGCATACGG
Found at i:15540720 original size:26 final size:26
Alignment explanation
Indices: 15540680--15540729 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15540670 TGGCTTAGGC
* *
15540680 ATACGAAGTTGATT-CCATGTCTAAGT
1 ATACAAAGTTCATTCCCA-GTCTAAGT
15540706 ATACAAAGTTCATTCCCAGTCTAA
1 ATACAAAGTTCATTCCCAGTCTAA
15540730 AATCGGACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAAGT
Found at i:15540905 original size:26 final size:26
Alignment explanation
Indices: 15540875--15540927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15540865 GTTGACTTAG
*
15540875 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
15540901 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15540927 G
1 G
15540928 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15540926 original size:197 final size:193
Alignment explanation
Indices: 15540627--15541188 Score: 567
Period size: 184 Copynumber: 2.9 Consensus size: 193
15540617 TGCGCATTCT
* * * * *
15540627 GCCTCTCCGACCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTGA
1 GCCTCTCCGACCG-CTGA--GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
* * * * *
15540692 TTCCATGTCTAAGTATACAAAGTTCATTCCCAGTCTAAAATCGGACCGGACCGAGGGTTGCGGCA
63 TCCCA-GTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* ** * *
15540757 GCAGAATTGGTAGCACGCAGGGGGGGACCGAGTCGATTAAC-GACTTG-AGCATTCTACCTC-TC
127 GCAGAATCGACAGCACGCA-GGGGGGACCGAGCCGA-TAACTGACTTGCA-CATTATACCTCTTC
*
15540819 TGGTCG
189 -GGTCA
15540825 GCCTCTCCGACCTGCTGAGCACCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCAT
1 GCCTCTCCGACC-GCTGAGC-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCAT
* * * * *
15540890 CCCTAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAG
64 CCC-AGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * ** * *
15540955 CAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCTTCGGTC
128 CAGAATCGACAGCACGCAGGGGGGACCGAGCCGATAACTGACTTGCACATTATACCTCTTCGGTC
15541020 A
193 A
*
15541021 G---CT-C-A--GCT---CCCGCACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATCC
1 GCCTCTCCGACCGCTGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCAT-C
* * * *
15541076 CCAGTCTAAGCATATGAAGTTTATTCCCAGTCTATGATCGGATCGGACCGAAGGTTGCGGCAGCA
65 CCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * * ** *
15541141 GGATCGACAGCACGTAAGGGGGACTG-GCCGATCCCTGACTTGCGCATT
130 GAATCGACAGCACGCAGGGGGGACCGAGCCGATAACTGACTTGCACATT
15541189 CTGCCTCTCC
Statistics
Matches: 315, Mismatches: 42, Indels: 29
0.82 0.11 0.08
Matches are distributed among these distances:
183 20 0.06
184 120 0.38
185 4 0.01
188 3 0.01
191 1 0.00
192 1 0.00
193 2 0.01
195 2 0.01
196 35 0.11
197 109 0.35
198 17 0.05
199 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (193 bp):
GCCTCTCCGACCGCTGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCC
CAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
AATCGACAGCACGCAGGGGGGACCGAGCCGATAACTGACTTGCACATTATACCTCTTCGGTCA
Found at i:15541089 original size:26 final size:26
Alignment explanation
Indices: 15541059--15541109 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15541049 GTTGACTTAT
*
15541059 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* *
15541085 GCATATGAAGTTTATTCCCAGTCTA
1 GCATATGAAGTTCATCCCCAGTCTA
15541110 TGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:15541164 original size:184 final size:183
Alignment explanation
Indices: 15540825--15541269 Score: 599
Period size: 184 Copynumber: 2.4 Consensus size: 183
15540815 TCTCTGGTCG
* * *
15540825 GCCTCTCCGACCTGCTGAGCA-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGGCCAGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
* * * *
15540889 TCCCTAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTACGGCA
66 TCCCCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGAACTGGACCGAAGGTTACGGCA
* *
15540954 GCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTAT
131 GCAGGATCGACAGCACGCAAGGGGGA-CGGGCCGATCCCTGACTTGCACATTAT
* * * * *
15541008 GCCTCTTCGGTCAGCTCAGCTCCCGCACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCA
1 GCCTCTCCGGCCAGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
* * * *
15541073 TCCCCAGTCTAAGCATATGAAGTTTATTCCCAGTCTATGATCGGA-TCGGACCGAAGGTTGCGGC
66 TCCCCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGAACT-GGACCGAAGGTTACGGC
* * * *
15541137 AGCAGGATCGACAGCACGTAAGGGGGACTGGCCGATCCCTGACTTGCGCATTCT
130 AGCAGGATCGACAGCACGCAAGGGGGACGGGCCGATCCCTGACTTGCACATTAT
* * * *
15541191 GCCTCTCCGGCCAGCTAAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGGCCAGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
*
15541256 T-TCCATGTCTAAGC
66 TCCCCA-GTCTAAGC
15541270 CCCAGTCAGA
Statistics
Matches: 228, Mismatches: 31, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
182 3 0.01
183 104 0.46
184 121 0.53
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (183 bp):
GCCTCTCCGGCCAGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
TCCCCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGAACTGGACCGAAGGTTACGGCA
GCAGGATCGACAGCACGCAAGGGGGACGGGCCGATCCCTGACTTGCACATTAT
Found at i:15541562 original size:26 final size:26
Alignment explanation
Indices: 15541532--15541582 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15541522 TGGCTTAGGC
15541532 ATATGAAGTTCATT-CCATGTCTAAGT
1 ATATGAAGTTCATTCCCA-GTCTAAGT
*
15541558 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGAAGTTCATTCCCAGTCTAAG
15541583 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATGAAGTTCATTCCCAGTCTAAGT
Done.