Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 125 of 402
Found at i:15542329 original size:26 final size:26
Alignment explanation
Indices: 15542293--15542345 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15542283 GTTGACTTTG
15542293 GCATACGGAGTTC-ATCCCCAGTCTAA
1 GCATACGGAGTTCAAT-CCCAGTCTAA
15542319 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
15542345 G
1 G
15542346 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:15542802 original size:158 final size:158
Alignment explanation
Indices: 15542319--15542818 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 158
15542309 CCCAGTCTAA
* * * * * *
15542319 GCATACGGAGTTCAATCCCAGTCTAAGATCAGATCGAATCGAAGGTT-ACGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGA-GGCAGCAGGATCGAT
* * * *
15542383 AGCATGCAGGTGAG-ACCGGGTCGATACCCTGCTTGGGCATTCTGCCTCTCCGG-TCGACTGAGC
65 AGCATGCAGG-GAGAACCGGGCCGATTCCCTGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGC
* * *
15542446 ACCTGTACGCCCGTTTAGTGGGTTGGCTTAG
128 ACCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
15542477 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGATCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGATCGAGGGTTGAGGCAGCAGGATCGA
* * * * * * * * * *
15542540 TAGCACGTAGAGAAGTACCGGGCCGA-TCCCTGGCGTGCGCATTATGCCTCTTCGACCGGCTTAG
64 TAGCATGCAG-GGAGAACCGGGCCGATTCCCT-GCTTGCGCATTCTGCCTCTCCGGCTGGCTGAG
* * * *
15542604 CACCCGCACGCTCGTTTCATGGGTTGACTTAT
127 CACCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* **
15542636 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGAGGCAGCAGGATCGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGAGGCAGCAGGATCGATA
* * *
15542701 GCATGCAGGGGGAACCGGGCCGATTCCC-GACTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCGC
66 GCATGCAGGGAGAACCGGGCCGATTCCCTG-CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCAC
* *
15542765 CCGTACACTCATTTCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
15542794 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15542819 GGATTTTGAG
Statistics
Matches: 270, Mismatches: 61, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 144 0.53
159 119 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGAGGCAGCAGGATCGATA
GCATGCAGGGAGAACCGGGCCGATTCCCTGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15543526 original size:26 final size:24
Alignment explanation
Indices: 15543497--15543546 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
15543487 GCATATGAAG
*
15543497 TTCATCCCCAGTCTAAGCATACAGAC
1 TTCATCCCAAGTCTAAG-AT-CAGAC
*
15543523 TTCATTCCAAGTCTAAGATCAGAC
1 TTCATCCCAAGTCTAAGATCAGAC
15543547 CGGATCGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 2 0.09
26 15 0.68
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
TTCATCCCAAGTCTAAGATCAGAC
Found at i:15543970 original size:158 final size:157
Alignment explanation
Indices: 15543513--15544014 Score: 523
Period size: 158 Copynumber: 3.2 Consensus size: 157
15543503 CCCAGTCTAA
* * * * **
15543513 GCATACAGACTTCATTCCAAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGTAGGATCGACA
* *
15543578 GCAAGCAGGGGGGATCGAGTCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGC
66 GCAAGCAGGGGGGATCGAGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCTG-TCAGCTGAGCGC
* * * *
15543642 CCACACGCACGTTTCGTGGGTTGGCTTGG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** **
15543671 GCATAGGGAGTTCATT-CCATGTCT--GATTCCCACCCGGATCGAGGGTTGT-AGCAGCGGGA-C
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGA-CCGGATCGAGGGTTGTGA-CAGTAGGATC
* * * * *
15543731 TGATAGCATA-CAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGTCCGGCT
62 -GACAGCA-AGCAG-GGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGT-CAGCT
* * *
15543795 CAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAG
123 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15543830 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGTAGGATCGACA
* * *
15543895 GCACGTAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTAGTTAGCTGAGCGCC
66 GCAAGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCT-GTCAGCTGAGCGCC
* * *
15543960 CGTACGCTCGTTTCGTGGGTTAACTTAC
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15543988 GCATACGGAGTTCATACCCTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
15544015 CATACAGAGT
Statistics
Matches: 278, Mismatches: 50, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 141 0.51
159 116 0.42
160 11 0.04
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGTAGGATCGACA
GCAAGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGTCAGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15544165 original size:184 final size:183
Alignment explanation
Indices: 15543837--15544256 Score: 502
Period size: 184 Copynumber: 2.3 Consensus size: 183
15543827 TAGGCATATG
* * * * *
15543837 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGTAGGATCAACAGCACGTA
1 GAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGTA
** * * **
15543902 GGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTAGTTAGCTGAGCGCCCGTACGC
65 GGGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCCAGCGAGCTGAGCGCCCGTACGC
* * * *
15543967 TCGTTTCGTGGGTTAACTTACGCATACGGAGTTCATACCCTGTCTAAGCATACA
130 TCATTTCATGGGTTAACTTACGCATACAGAGTTCATACCATGTCTAAGCATACA
* * * *
15544021 GAGTTAATTCTCAGTCTAAGATCGGATCGGATCGAGGGTTGCGATAGCAGGATCGACAGCACGTA
1 GAGTTCATTC-CAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGTA
* * * *
15544086 GGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGA-CTGAGCGCTC-TCAT
65 GGGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCCAG-CGAGCTGAGCGCCCGT-AC
* * * * *
15544149 GCTCATTTCATGGGTTAGCTTAGGCATACAGTGTTCATTCCATGTCTAAGCATACG
128 GCTCATTTCATGGGTTAACTTACGCATACAGAGTTCATACCATGTCTAAGCATACA
* * *
15544205 GAGTTCATTCCAGTCTAAGATCGGATTGGGACCGAGGGTTACGACAGTAGGA
1 GAGTTCATTCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGACAGCAGGA
15544257 CCAGCAGTGG
Statistics
Matches: 198, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
183 17 0.09
184 180 0.91
185 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (183 bp):
GAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGTAG
GGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCCAGCGAGCTGAGCGCCCGTACGCT
CATTTCATGGGTTAACTTACGCATACAGAGTTCATACCATGTCTAAGCATACA
Found at i:15544202 original size:26 final size:25
Alignment explanation
Indices: 15544172--15544223 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15544162 GTTAGCTTAG
*
15544172 GCATACAGTGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
15544198 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
15544223 G
1 G
15544224 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:15544918 original size:26 final size:26
Alignment explanation
Indices: 15544867--15544919 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15544857 GTTGGCTTAG
* *
15544867 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
15544893 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
15544919 G
1 G
15544920 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:15546831 original size:26 final size:26
Alignment explanation
Indices: 15546801--15546853 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15546791 GTCGACTGAG
15546801 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
* * *
15546827 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
15546853 G
1 G
15546854 GTCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:15547301 original size:158 final size:158
Alignment explanation
Indices: 15546835--15547328 Score: 471
Period size: 158 Copynumber: 3.1 Consensus size: 158
15546825 AAGCATATGA
* * * *
15546835 AGTTCATTCCTAGTCTAAGGTCGGACCGGACCGAGGGTTGCAGCT-GCAGGATCGGCAGCACGCA
1 AGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCAG-TAGCAGGATCGGCAGCACGTA
* * * * * * *
15546899 GGGAGGATCGGGTTGATCCCCAACTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGGACGC
65 GGGGGGACCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGC
* **
15546964 -CTGTTTCATGGGTTGGCTTAGGCATAGGG
130 TC-GTTTCGTGGGTTGGCTTAGGCATACAG
** ** ** * *
15546993 AGTTCATTCC-ATGTCTAAGCCCCAG-CTGGATTGAGGGTTGTGGCAGTCA-GATCAGCAGCACG
1 AGTTCATTCCTA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCAGTAG-CAGGATCGGCAGCACG
* * ** * **
15547055 TAGAGGGGGTCCGGG-CTGATCCCCAGCTTGTGTATTATGCCTCTCCGATCGGCTCAGTGCCCGC
63 TAG-GGGGGACCGGGTC-GATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGCTGAGCACCCGC
* * *
15547119 ATGGTCGTTTCGTGGGTTGACTTAGGCATACAG
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAG
* *
15547152 AGTTCTTTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCAGGATTGGCAGCACGTAG
1 AGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGTAG
* * * * **
15547217 GGGGGACCGGGTCGATCTCCGGCTTGTGCATTTTGCCTCTTCGGCCTACTGAGCACCCGCACGCT
66 GGGGGACCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCT
** *
15547282 CGTTTCGTGGGTTGGCTTAGAAATACGG
131 CGTTTCGTGGGTTGGCTTAGGCATACAG
*
15547310 AGTTCACTCC-ACGTCTAAG
1 AGTTCATTCCTA-GTCTAAG
15547329 CATACGAGTT
Statistics
Matches: 262, Mismatches: 62, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 137 0.52
159 121 0.46
160 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
AGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGTAG
GGGGGACCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACAG
Found at i:15547339 original size:25 final size:26
Alignment explanation
Indices: 15547304--15547353 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
15547294 TGGCTTAGAA
15547304 ATACGGAGTTCACT-CCACGTCTAAGC
1 ATACGGAGTTCACTCCCA-GTCTAAGC
*
15547330 ATAC-GAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCACTCCCAGTCTAAG
15547354 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
ATACGGAGTTCACTCCCAGTCTAAGC
Found at i:15547686 original size:169 final size:171
Alignment explanation
Indices: 15547328--15548011 Score: 516
Period size: 159 Copynumber: 4.2 Consensus size: 171
15547318 CCACGTCTAA
** * * * *
15547328 GCATAC-GAGTTCATTCCCA-GTCTAAGATCGAACCAGACTGAGGGTTGCGGTAGCAGGACCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCAGC
* * *
15547391 AACAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTATCTCTCTCG
65 AACAGGATAGACAGCACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTACCTCTCTCG
*
15547456 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 GCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
15547498 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGCAGGGCCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
* * * * *
15547563 ACGGGATAGGCAGCACGCA-GGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCT-G
66 ACAGGATAGACAGCACGCAGGGGGGACCGAGCCGAT-CCCAGACTTACGCATTCTACCTCTCTCG
* *
15547625 GCCGGCTAAGCGCCGGCACG-TCCGTTTCGTGGGTTGGCTTAG
130 GCCGGCTAAGCGCCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * * *
15547667 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACC-G--
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
* * * * * * * *
15547729 ACA-G---CAC-GTA-G-A-GGGGGACCGGGCTGATCCTC-GGCTTGCGCATTATGCCTCT-TCG
66 ACAGGATAGACAGCACGCAGGGGGGACCGAGCCGATCC-CAGACTTACGCATTCTACCTCTCTCG
** * * * * * * *
15547784 GTAGGCTCAGCACCCGCACACTTGTTTCGTGGGTTGACTTAT
130 GCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** ** * **
15547826 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCAAGGG-T-T----GCA-G--CAG-
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCAGC
* * * ** * * * ** *
15547880 --CAGGATCGATAGCACGCAGAGGGGAATGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTC-CG
65 AACAGGATAGACAGCACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTACCTCTCTCG
* * *
15547942 GCCGGCTGAGCGCCCGCACGCTCATTCCATGGGTTGGCTTAG
130 GCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
15547984 GCATACGGAGTTCATTTCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15548012 ATACGGAGTT
Statistics
Matches: 420, Mismatches: 73, Indels: 54
0.77 0.13 0.10
Matches are distributed among these distances:
150 3 0.01
151 2 0.00
152 1 0.00
153 2 0.00
154 1 0.00
155 2 0.00
156 1 0.00
157 5 0.01
158 93 0.22
159 99 0.24
160 5 0.01
161 2 0.00
162 1 0.00
165 1 0.00
166 2 0.00
168 2 0.00
169 93 0.22
170 41 0.10
171 64 0.15
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
ACAGGATAGACAGCACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTACCTCTCTCGG
CCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15548033 original size:26 final size:26
Alignment explanation
Indices: 15547984--15548036 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15547974 GTTGGCTTAG
*
15547984 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15548010 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15548036 G
1 G
15548037 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15548122 original size:11 final size:11
Alignment explanation
Indices: 15548106--15548138 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15548096 CCCAGGGCAC
15548106 CATCGTCGGAG
1 CATCGTCGGAG
15548117 CATCGTCGGAG
1 CATCGTCGGAG
*
15548128 CATCGCCGGAG
1 CATCGTCGGAG
15548139 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15548754 original size:26 final size:26
Alignment explanation
Indices: 15548717--15548769 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15548707 GTTGACTTAG
15548717 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15548743 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
15548769 G
1 G
15548770 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15549595 original size:906 final size:907
Alignment explanation
Indices: 15547826--15549783 Score: 2982
Period size: 906 Copynumber: 2.1 Consensus size: 907
15547816 GTTGACTTAT
* *
15547826 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA-AGGGTTGCAGCAGCAGGATCGAT
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACC-GAACAGAGGGTTGCAGCAGCAGGATCGGT
*
15547890 AGCACGCAGAGGGGAAT-GGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCG
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCC-GCTGAGCG
* * * *
15547954 CCCGCACGCTCATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGA
127 CCCGCACACACATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGA
*
15548019 GTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTACC
192 GTTCATTCCCAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTACC
15548084 ACATTTTTTTCACCCAGGGCACCATCGTCGGAGCATCGTCGGAGCATCGCCGGAGAGCCTAACCG
257 ACATTTTTTTCACCCAGGGCACCA-C-T--G-G---CGTCGGAGCATCGCCGGAGAGCCTAACCG
* * * *
15548149 ACGGATTTGAGGTTCCGACGATTGGGGCGGCCAGGGGAGTGTGTGCACATGATGTGCGATGGGTG
314 ACGCATTGGAGGTTCCGACGATTGGGGCGGCCAGGGGAGTGTGCGCACATGATGTACGATGGGTG
*
15548214 CTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAA
379 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAA
*
15548279 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACTCTT
444 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTT
15548344 TTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
509 TTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
*
15548409 CAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAA
574 CAAAAATACAAGGATCACCTCTACCAAATTTAGGGACAAAACTCTTTCTAAAAAAATTTTAAAAA
* * * *
15548474 ATCTCAAACCGCAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGGGTCGTCTTGCCACGAAAC
639 ATCCCAAACCGAAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCACGAAAC
15548539 TTAACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
704 TTAACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* *
15548604 AGAAATATGAAGATGTGATTGAACCCACCTACCACATGTTCGATCCCCGGCTTGTACATCCTGCC
769 AGAAATATGAAGATGTGATTGAACCCACCTACCACACGTTCGATCCCCGGCTTGCACATCCTGCC
*
15548669 TCTCTGGTCAGCTGAGCGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCC
834 TCTCTGGTCAGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCC
15548734 CCAGTCTAA
899 CCAGTCTAA
* * *
15548743 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTGCAGCAGCAGGATCGGTA
* * *
15548808 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCC-GCTGAGCGCC
* * * * * *
15548873 CGCACACACGTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCACGTCTAAGCTTACGGAGT
129 CGCACACACATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGT
* * * *
15548938 TCATTTCCAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGC
194 TCATTCCCAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTACCAC
*
15549003 ATTTTTTTCGCCC-GAGGCACCA-T-G-GTCGGAGCATCGCCGGAGAGCCTAACCGACAGCATTG
259 ATTTTTTTCACCCAG-GGCACCACTGGCGTCGGAGCATCGCCGGAGAGCCTAACCGAC-GCATTG
* * *
15549064 GGGGTTCCGGCGATTGGGG-GGGCAGGGG-GTGTGCGCACATGATGTACGATGGGTGCTGGTACT
322 GAGGTTCCGACGATTGGGGCGGCCAGGGGAGTGTGCGCACATGATGTACGATGGGTGCTGGTACT
** *
15549127 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCAT
387 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCAT
* *
15549192 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAA
451 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
15549257 ACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
516 ACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAAT
* *
15549322 ACAAGGATTACCTCTACCAAATTTAGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGA
581 ACAAGGATCACCTCTACCAAATTTAGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCAA
** * *
15549387 ACCGTAAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC-AGTCGTCTTGCCACGAAACTTCACA
646 ACCG-AAAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTAACA
* *
15549451 TGAAGGCTTAGGGGACCATTGTATGAATTTACATGTCATAAAAATGGCATTGGCATGGCAGAAAT
710 TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
15549516 ATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTG
775 ATGAAGATGTGATTGAACCCACCTACCACACGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTG
* * * *
15549581 GTC-GACTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGT
840 GTCAG-CTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGT
15549645 CTAA
904 CTAA
** * * *
15549649 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATAGGACTGAGGGTTGCAACAGCAGGATCGGTA
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTGCAGCAGCAGGATCGGTA
* * * *
15549714 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGACCGACTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCG-CTGAGCGCC
*
15549779 TGCAC
129 CGCAC
15549784 GGTACTGCCT
Statistics
Matches: 949, Mismatches: 83, Indels: 29
0.89 0.08 0.03
Matches are distributed among these distances:
905 81 0.09
906 564 0.59
907 50 0.05
910 1 0.00
914 1 0.00
916 11 0.01
917 241 0.25
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (907 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACCGAACAGAGGGTTGCAGCAGCAGGATCGGTAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGCTGAGCGCCCG
CACACACATTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTACCACAT
TTTTTTCACCCAGGGCACCACTGGCGTCGGAGCATCGCCGGAGAGCCTAACCGACGCATTGGAGG
TTCCGACGATTGGGGCGGCCAGGGGAGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAG
ATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
CACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAG
GATCACCTCTACCAAATTTAGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCAAACCGA
AAAAAGTTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTAACATGAAGG
CTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
ATGTGATTGAACCCACCTACCACACGTTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCAGC
TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAA
Found at i:15549660 original size:26 final size:26
Alignment explanation
Indices: 15549623--15549675 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15549613 GTTGACTTAG
*
15549623 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
15549649 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15549675 G
1 G
15549676 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15555854 original size:159 final size:159
Alignment explanation
Indices: 15555673--15556028 Score: 385
Period size: 159 Copynumber: 2.2 Consensus size: 159
15555663 CGTTTTGTGG
* * **
15555673 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTACGGCAGC
* * * * * * *
15555738 GGGATCAACAGCATGCAGAGCGGGATCAGGCTGAT-CCTAGGCTTGTGCATTGTGCCTCTCCGAC
66 AGGATCAACAGCACGCAGAGAGGGATCAGGCCGATCCCT-GGCTTGCGCATTCTACCTCTCCG-C
* *
15555802 T-GACTCAGTGCCCGCACGCTCGTTTCATGA
129 TCGACTAAGCGCCCGCACGCTCGTTTCATGA
* * * * *****
15555832 GTTGACTTAGACATATGAAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTACGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTACGGCAG
* * * *
15555896 CAGGATCGACAGCACGCAGGGAGGGATCAGGCCGATCCCTGGCTTGCGCATTCTACCTTTCCGGT
65 CAGGATCAACAGCACGCAGAGAGGGATCAGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGCT
* * * *
15555961 CGGCTAAGCGCCCGCGCGCTCGTTTCGTGG
130 CGACTAAGCGCCCGCACGCTCGTTTCATGA
*
15555991 GTTGGCTTAGGCATACGGCGTTCATTCCATGTCTAAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15556029 ATACAAAGTC
Statistics
Matches: 158, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 4 0.03
159 148 0.94
160 6 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTACGGCAGC
AGGATCAACAGCACGCAGAGAGGGATCAGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGCTC
GACTAAGCGCCCGCACGCTCGTTTCATGA
Found at i:15556322 original size:171 final size:171
Alignment explanation
Indices: 15556059--15556382 Score: 416
Period size: 171 Copynumber: 1.9 Consensus size: 171
15556049 TAAGATCGGA
* * * *
15556059 CTGGATCGAGGGTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGGACCGAGC
1 CTGGATCGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGACAGCACGCAGAGGGGGACCGAGC
* * *** *
15556124 CGATCCCTGGCCTACACATTCTGCCTCTCTGACCGGCTGAGCACTTGCACACTCGTTTCGTGGGT
66 CGATCCCTGGCCTACACATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCGTGGGT
*
15556189 TGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCCCGG
131 TGACTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCCGG
* * * * *
15556230 CTGGATCGAGGGTTGTGGCAGCAGGACCGGTAACGGGATCGACAGCACGCAGAGGGGGATCGAGC
1 CTGGATCGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGACAGCACGCAGAGGGGGACCGAGC
* ** *** * *
15556295 TGATCCCTGGTTTGTGCATTATGCCTCTCCGACCGGTTGAGCGCCCACACACTCATTTCGTGGGT
66 CGATCCCTGGCCTACACATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCGTGGGT
15556360 TGACTTAGGCATACGAAGTTCAT
131 TGACTTAGGCATACGAAGTTCAT
15556383 CCCCAATCTA
Statistics
Matches: 128, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
171 127 0.99
172 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (171 bp):
CTGGATCGAGGGTTGCGGCAGCAGGACCAGCAACAGGATCGACAGCACGCAGAGGGGGACCGAGC
CGATCCCTGGCCTACACATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCGTGGGT
TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCGG
Found at i:15556744 original size:158 final size:159
Alignment explanation
Indices: 15556443--15556836 Score: 463
Period size: 159 Copynumber: 2.5 Consensus size: 159
15556433 CGAGGGTTGC
* * * * * *
15556443 GGCAGCACG-CAGGAGGGACTGGGCCGATCCTCAGCTTGCGTATTCTGCCTCTCCGACTGGCTGA
1 GGCAGCACGCCAGG-GGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGA
* * * * * *
15556507 GCCCCCTGTACGCCCGTTTCATGGGTTGGCTTAGTCATAGGTAGTTAATTCCATGTATAAGCCCC
65 GCGCCC-GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATATATAAGCCCC
*
15556572 AGTCGGGCCAAGGGTTGTGGCAGCGGGAT-A
129 AGTCGGACCAAGGGTTGTGGCAGCGGGATCA
* *
15556602 GGCAGCACGCCAGGGGTACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
1 GGCAGCACGCCAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
* ** * *
15556667 GGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAG
66 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATATATAAGCCCCAG
*
15556732 -CTGGACCGAGGGTTGTGGCAGCGGGATCA
131 TC-GGACCAAGGGTTGTGGCAGCGGGATCA
* * * * * * * *
15556761 -GCAGCATGCAGAGGGGGACCGAGCCGATCCTTGGCTTGCGCATTATGCCTCTTTGGTCGGCTCA
1 GGCAGCACGC-CAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGA
15556825 GCGCCCGCACGC
65 GCGCCCGCACGC
15556837 TTGTTTCATT
Statistics
Matches: 199, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
157 1 0.01
158 82 0.41
159 112 0.56
160 4 0.02
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (159 bp):
GGCAGCACGCCAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAG
CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATATATAAGCCCCAG
TCGGACCAAGGGTTGTGGCAGCGGGATCA
Found at i:15557047 original size:26 final size:26
Alignment explanation
Indices: 15557011--15557063 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15557001 GTTGGCTTAG
15557011 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15557037 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15557063 G
1 G
15557064 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15557951 original size:159 final size:159
Alignment explanation
Indices: 15557703--15558227 Score: 621
Period size: 159 Copynumber: 3.3 Consensus size: 159
15557693 CTGGCTAAGT
* * * * * * *
15557703 ACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCAAC
* * * *
15557768 CAGACCCAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACCAGGCTGATCCCCGGCTT
66 CAGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCCTGGCTT
*
15557833 GCGCATTCTGCCTCTCCGGTCGATTGAGC
131 GCGCATTCTGCCTCTCCGGTCGGTTGAGC
15557862 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCAAGTCTAAGACCCAA
1 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCAAGTCTAAGACCCAA
* *
15557926 CCAGATCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCCTGACT
65 CCAGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCCTGGCT
* * * * * * *
15557991 TGTGCATTATGCCTCTTC-GACAGGCTCAGT
130 TGCGCATTCTGCCTCTCCGGTC-GGTTGAGC
* * * * *
15558021 GCCCGCACACTCGTTTCATGGGTTGAG-TTAGGCTTACGGAGTTCATTCCCAGTCTAAGA-TCAG
1 ACCCGCACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCA-
* * * ** ** *
15558084 ACCGGACCGAGGGTTGCGATAGCAAGATTGACAGCACGCAG-GGGGGACCAGG-TCGATCCCTAG
64 ACCAGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCT-GATCCCTGG
*
15558147 CTTGCGCATTCTCCCTCTCCGGTCGGTTGAGC
128 CTTGCGCATTCTGCCTCTCCGGTCGGTTGAGC
* **
15558179 GCCTACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
15558228 TTGTCTAAAC
Statistics
Matches: 311, Mismatches: 47, Indels: 17
0.83 0.13 0.05
Matches are distributed among these distances:
157 2 0.01
158 87 0.28
159 220 0.71
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCAAC
CAGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCTGATCCCTGGCTT
GCGCATTCTGCCTCTCCGGTCGGTTGAGC
Found at i:15558868 original size:159 final size:157
Alignment explanation
Indices: 15558482--15559079 Score: 480
Period size: 159 Copynumber: 3.8 Consensus size: 157
15558472 GCGGGATCGG
* * * * * * * * * *
15558482 CAGCACACAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCATCTCCGACTGGCTGAGC
1 CAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATT-TGCCTCTTCGGC-CGCTCAGC
* * * * *
15558547 ACCCGTATGCTCATTT--TGAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGATCAG
64 ACCCGCACGCTCGTTTCGTG-GGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGACCAG
* * * * * *
15558609 ATCGGACTGAGGGTTG-AGGTAGCAGGATCGA
127 ACCGGACCGAAGGTTGCA-GCAGCATGACCGA
* ** * * * *
15558640 CAGTACGCA-AGGGGGATTTG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCATTAG
1 CAGCACGCAGAGGGGGA-CCGAGCCGATCCCCGGCTTGCGCATT-TGCCTCTTCGGCCGC-TCAG
* * *
15558703 CACCCGCACGC-CTGTTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
63 CACCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCA
* ** *
15558767 G-CCGGACCGAGGGTTGTGGCAGCGA-GACCGG
126 GACCGGACCGAAGGTTGCAGCAGC-ATGACCGA
* *
15558798 CAGCACGTAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGC
1 CAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATT-TGCCTCTTCGGCC-GCTCAGC
* * * * *
15558863 ACCCGCACGCTCGTTTCATGAGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCAGA
64 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGA
* * *
15558927 CCGGACTGAAGGTTGCAGCATCATGATCGA
128 CCGGACCGAAGGTTGCAGCAGCATGACCGA
* * ** * * *
15558957 CAGCACGCAGGGGGGGACCGGGCCGATCCCCATCTTCCG-ATTTCGGCCTCTTAGGCCGACTGAG
1 CAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTT--GCCTCTTCGGCCG-CTCAG
* *
15559021 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
63 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
15559080 GATACGGAGT
Statistics
Matches: 356, Mismatches: 64, Indels: 39
0.78 0.14 0.08
Matches are distributed among these distances:
156 3 0.01
157 55 0.15
158 80 0.22
159 212 0.60
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTTGCCTCTTCGGCCGCTCAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCG
GACCGAAGGTTGCAGCAGCATGACCGA
Found at i:15559091 original size:26 final size:26
Alignment explanation
Indices: 15559055--15559105 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15559045 TGGCTTAGGC
15559055 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
15559081 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15559106 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:15560088 original size:159 final size:160
Alignment explanation
Indices: 15559829--15560301 Score: 499
Period size: 158 Copynumber: 3.0 Consensus size: 160
15559819 CGTAAGATCG
* *
15559829 GACCGGATCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCA-AGGGGGA-TCGGGTCGATCCCCG
1 GACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACT-GGGCCGATCCCCG
* * * *
15559892 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCCTAGG
65 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
15559957 CATAGGGAGTTCATTCCATGTCTAAGCCCCA
130 CATACGGAGTTCATTCCATGTCTAAGCACCA
* * ** * * *
15559988 G-CCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACTGGGCCGATCACCGG
1 GACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGG
* * ** * * * * * ** *
15560052 CTTGTGCATTATGCCTCTTCGACCTGCTCAGCGCCCGCACACTTGTTTCGTGGGTTTACTTATGC
66 CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
** *
15560117 ATATAGAGTTCATTCCCA-GTCTAAG-ATCA
131 ATACGGAGTTCATT-CCATGTCTAAGCACCA
** * * * * * * * *
15560146 GATTGGACTGAGGATTGCGGTAGCAAGATTGACAGCATGCAG-GGGGGACCGAGCCGATCCCCGA
1 GACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGG
* * *
15560210 CTTGGGCATTCTACCTATTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
66 CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
15560275 ATACGGAGTTCATTCCATGTCTAAGCA
131 ATACGGAGTTCATTCCATGTCTAAGCA
15560302 TACGGAGTTC
Statistics
Matches: 246, Mismatches: 62, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 123 0.50
159 116 0.47
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (160 bp):
GACCGGACCGAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGG
CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCACCA
Found at i:15560303 original size:26 final size:26
Alignment explanation
Indices: 15560273--15560325 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15560263 GTTGGCTTAG
15560273 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15560299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15560325 G
1 G
15560326 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15561215 original size:25 final size:26
Alignment explanation
Indices: 15561180--15561229 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
15561170 TGACTTAGGC
15561180 ATATGGAGTTCATCCCCAGTCTAAGT
1 ATATGGAGTTCATCCCCAGTCTAAGT
*
15561206 ATAT-GAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATCCCCAGTCTAAG
15561230 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
ATATGGAGTTCATCCCCAGTCTAAGT
Found at i:15561386 original size:182 final size:182
Alignment explanation
Indices: 15560978--15561374 Score: 566
Period size: 182 Copynumber: 2.2 Consensus size: 182
15560968 CGCACTTTCA
* *
15560978 TTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCGAAGTATACAGAGTTCATTCCCAA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACAGAGTTCATTCCCAA
* * *
15561043 CGTAAGATTAGACCAGACCGAGGGTTGTGGTAGCAGGATCAGCAGCACGCAGGGGGGATCGGGTC
66 CGTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGGGGGGATCGGGCC
* * *
15561108 GATCCCGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCACACTCTCG
131 AATCCCGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCACACGCCCG
* *
15561160 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGTATA-TGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACAGAGTTCATTCCCA-
* * * *
15561224 TC-TAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATCTA-CAGCATACAGGGGGGATCGGG
65 ACGTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATC-AGCAGCACACAGGGGGGATCGGG
* * *
15561287 CCAATCCCCGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCACGCCCG
129 CCAAT-CCCGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCACACGCCCG
* * *
15561342 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
15561375 TCCATGTCTA
Statistics
Matches: 192, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
181 70 0.36
182 122 0.64
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACAGAGTTCATTCCCAA
CGTAAGATTAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGGGGGGATCGGGCC
AATCCCGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCACACGCCCG
Found at i:15561572 original size:152 final size:153
Alignment explanation
Indices: 15561210--15561589 Score: 390
Period size: 152 Copynumber: 2.5 Consensus size: 153
15561200 CTAAGTATAT
** * * *
15561210 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATCTACAGCATACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATGCA
* * * * *
15561275 GGGGGGATCGGGCCAATCCCCGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCACGCC
66 GGGGGGA-CCGGCC-AT--CCGCTTGCGAATTATACCTCTCCGGTCGGCTCAGCACCCGCACGCC
* * *
15561340 CGTTTCATGGGTTGGCTTAGGCATAGG
127 CATTTCATGGGTTGACTTAGGCATACG
** * * * * *
15561367 GAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGAGTTGTGGCAGCGGGATCGACAGCATG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATG
* * * * ** *
15561430 CAGAGGGGGACCGGCC-T-GGCTTGTGAATTATGCCTCTTCGGTCGGCTCAGCGTCCGCACGCTC
64 CAG-GGGGGACCGGCCATCCGCTTGCGAATTATACCTCTCCGGTCGGCTCAGCACCCGCACGCCC
*
15561493 ATTTCATGGGTTGACTTATGCATACG
128 ATTTCATGGGTTGACTTAGGCATACG
* * *
15561519 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGTAGGATCGATAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATGCA
15561584 GGGGGG
66 GGGGGG
15561590 GACTGGGTTG
Statistics
Matches: 180, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
151 8 0.04
152 105 0.58
153 3 0.02
155 1 0.01
156 3 0.02
157 53 0.29
158 7 0.04
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (153 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCATGCA
GGGGGGACCGGCCATCCGCTTGCGAATTATACCTCTCCGGTCGGCTCAGCACCCGCACGCCCATT
TCATGGGTTGACTTAGGCATACG
Found at i:15562413 original size:26 final size:26
Alignment explanation
Indices: 15562383--15562435 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15562373 GTTGACTTAG
*
15562383 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15562409 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15562435 G
1 G
15562436 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15562794 original size:159 final size:158
Alignment explanation
Indices: 15562409--15562910 Score: 478
Period size: 159 Copynumber: 3.2 Consensus size: 158
15562399 CCCAGTCTAA
* *
15562409 GCATACGAAGTTCATTCC-TAGTCTAAGATCGGATAGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * **
15562473 AGCACGCAGGAGGGGACCGGACTGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCAACTGAGCG
65 AGCAAGCAGG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGTCTCTTCTGTCGGCTGAGCG
* *
15562538 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** * * * * * * *
15562568 TCATAGGGAGTTCATTCCATGCCTAATCTC-TAGCTGGACTGAGGGTTGTGGCAGCGGGAACGGC
1 GCATACGAAGTTCATTCCATGTCTAAGATCGGA-CAGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
15562632 AGCAAGCAGAGGGGGACTGGGCCGATCTCCGGCTTGCGCATTATGTCTCTTCTGTCGGCTCAGCG
65 AGCAAGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGTCTCTTCTGTCGGCTGAGCG
* *
15562697 CCCGCACGCTCGTTTCATGGGTTGACTTTG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
15562727 GCATAC-AGAGTTCATTCCCA-GTCTAAGATCGGACCGAACCGAGCGTTGCGGTAGCAGGATCGA
1 GCATACGA-AGTTCATT-CCATGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
15562790 CAGC-AGCAGGGGGGACCGGGTCGGTCCCCGAG-TTGTGCATTTTGTCTC-TCTGGTCGGCTGAA
64 CAGCAAGCAGGGGGGACCGGGCCGATCCCCG-GCTTGCGCATTATGTCTCTTCT-GTCGGCTGAG
* **
15562852 TGCCCGTTCGCTCGTTTCATGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
15562884 GCATACGAAGTTCAATCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
15562911 CATACGGAGT
Statistics
Matches: 271, Mismatches: 62, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
156 6 0.02
157 86 0.32
158 8 0.03
159 165 0.61
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCGGACAGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCAAGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGTCTCTTCTGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15562913 original size:26 final size:26
Alignment explanation
Indices: 15562884--15562936 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15562874 GTTGGCTTAG
15562884 GCATACGAAGTTCAAT-CCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
* *
15562910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
15562936 G
1 G
15562937 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:15563280 original size:26 final size:26
Alignment explanation
Indices: 15563250--15563302 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15563240 GTTGACTCAG
*
15563250 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15563276 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15563302 G
1 G
15563303 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15563741 original size:158 final size:154
Alignment explanation
Indices: 15563276--15563777 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 154
15563266 CCCAATCTAA
* * ** * * *
15563276 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTACGGCAACAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAACAGGATCGACA
* * * * *
15563341 GCAC-GCAGGGGGGATCGGGCCGATCCCTGGCTTACAAATTCTACCTCTCCGACTGGCTGAGCGC
65 GCACAG-A-GGGGGATCGGGCTGATCCC-GGCTTGCACATTCTGCCTCTCCGAC-GGTTGAGCGC
* * *
15563405 CCACACACCCGTTTCGTGGGTTGGCTTAG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
15563434 GCATAGGGGGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAACGGGACCAA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-CGAGGGTTGCGGTAACAGGATCGA
* * * * * *
15563497 CAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGTTCAGC
63 CAGCA--CAGAGGGGGATCGGGCTGAT-CCCGGCTTGCACATTCTGCCTCTCCGA-CGGTTGAGC
* *
15563562 GCCCGCACGCTCGTTTTGTGGGTTGACTTAG
124 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
15563593 GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAACAGGATCGACA
*
15563658 GCACAGAGGTGGGATCGGGTTGATCTCCGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGCC
65 GCACAGAGG-GGGATCGGGCTGATC-CCGGCTTGCACATTCTGCCTCTCCGA-CGGTTGAGCGCC
*
15563723 TGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15563751 GCATACGGAGTTCACT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15563778 CATACGAAGT
Statistics
Matches: 273, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 13 0.05
158 137 0.50
159 113 0.41
160 9 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGTAACAGGATCGACAG
CACAGAGGGGGATCGGGCTGATCCCGGCTTGCACATTCTGCCTCTCCGACGGTTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15571897 original size:26 final size:26
Alignment explanation
Indices: 15571861--15571912 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15571851 TTGACTTAGC
15571861 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
15571887 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
15571913 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:15572080 original size:26 final size:26
Alignment explanation
Indices: 15572044--15572096 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15572034 GTTGGCTTAG
15572044 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
15572070 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
15572096 G
1 G
15572097 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:15573725 original size:27 final size:27
Alignment explanation
Indices: 15573695--15573752 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
15573685 CATGAGTTGA
* *
15573695 CTAAGGTATATGGAGTTCA-TCCCTAGT
1 CTAAGGCATATAGAGTTCATTCCC-AGT
15573722 CTAA-GCATATAGAGTTCATTCCCAGT
1 CTAAGGCATATAGAGTTCATTCCCAGT
15573748 CTAAG
1 CTAAG
15573753 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (27 bp):
CTAAGGCATATAGAGTTCATTCCCAGT
Found at i:15573738 original size:26 final size:26
Alignment explanation
Indices: 15573702--15573752 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15573692 TGACTAAGGT
*
15573702 ATATGGAGTTCA-TCCCTAGTCTAAGC
1 ATATAGAGTTCATTCCC-AGTCTAAGC
15573728 ATATAGAGTTCATTCCCAGTCTAAG
1 ATATAGAGTTCATTCCCAGTCTAAG
15573753 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATATAGAGTTCATTCCCAGTCTAAGC
Found at i:15573914 original size:26 final size:26
Alignment explanation
Indices: 15573884--15573936 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15573874 GTTGGCTTAG
*
15573884 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15573910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15573936 G
1 G
15573937 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15573968 original size:184 final size:185
Alignment explanation
Indices: 15573541--15573968 Score: 452
Period size: 184 Copynumber: 2.3 Consensus size: 185
15573531 GCTGCCTTAG
* ** * ** *
15573541 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGATAGCGGGATCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGG
* * * *
15573604 CAGTACGTAGTGGGTGATCAGGTCGATTCCTGGCTTACGCATTATGCCTCTCCGACCGGCTGAGT
64 CAGCACGCAGTGGGGGATCAGGTCGATTCCTGCCTTACGCATTATGCCTCTCCGACCGGCTGAGT
* * * * *
15573669 GCCCGCACGCTCATTTCATGAGTTGACTAAGGTATATGGAGTTCATCCCTAGTCTAA
129 GCCCGCACACCCATTTCATGAGTTGACTAAGGCATAGGGAGTTCATCCATAGTCTAA
** ** * * * * * *
15573726 GCATATAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGCTGCGGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGGCA
* * * * * *
15573791 GCACGCAG-GGGGGATCGGGTCGA-TCCTTGCCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGTG
66 GCACGCAGTGGGGGATCAGGTCGATTCC-TGCCTTACGCATTATGCCTCTCCGACCGGCTGAGTG
* * * * *
15573854 CCTGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAA
130 CCCGCACACCCATTTCATGAGTTGACTAAGGCATAGGGAGTTCA-TCCATAGTCTAA
15573910 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGA
15573969 CCGATAGCGG
Statistics
Matches: 193, Mismatches: 46, Indels: 9
0.78 0.19 0.04
Matches are distributed among these distances:
183 3 0.02
184 134 0.69
185 53 0.27
186 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGGCA
GCACGCAGTGGGGGATCAGGTCGATTCCTGCCTTACGCATTATGCCTCTCCGACCGGCTGAGTGC
CCGCACACCCATTTCATGAGTTGACTAAGGCATAGGGAGTTCATCCATAGTCTAA
Found at i:15574634 original size:27 final size:27
Alignment explanation
Indices: 15574604--15574661 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
15574594 CATGAGTTGA
*
15574604 CTAAGGTATAC-GAAGTTCATCCCCAGC
1 CTAAGGCATACAG-AGTTCATCCCCAGC
* *
15574631 CTAA-GCATACAGAGTTCATTCCCAGT
1 CTAAGGCATACAGAGTTCATCCCCAGC
15574657 CTAAG
1 CTAAG
15574662 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATCCCCAGC
Found at i:15574637 original size:909 final size:905
Alignment explanation
Indices: 15572742--15575542 Score: 3874
Period size: 909 Copynumber: 3.1 Consensus size: 905
15572732 TCTGGTCGAT
** * * * * *
15572742 TGAGCGCCCGCATGCTCATTTAATGGGTTGACTTAGACATACGGAGTTCATACCCAGTCTAAGCA
1 TGAGCGCCCGCACACTCATTTCATGAGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * ** *
15572807 TATGGTGTTCATTCCCAGTCTAAGACCGAACCGGACAGAGGGTTGCGATAGCAGGATCGACAGCA
66 TATAGAGTTCATTCCCAGTCTAAGATCGAACCGGACA-AGGGTTGCGGCAGCAAGATCGACAGCA
* * * * **
15572872 TGTAGGGGTGATCGGGCTAATCCCCGACTTGCGCATTATGCCTCTTCGATTGGCTGAGTGCCCGC
130 CGTAGGGGGGATCGGGC-GATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGTGCCCGC
* * ** * *
15572937 ACACCAATTTCATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTGTATGGAGTTTA
194 ACACCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
* * * * * * * *
15573002 TTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTTGCAGCAGGATCGACGGTGGGATCGGTAGC
259 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGGACCGACAGCGGGATCGGTAGC
* * * * *
15573067 ACGCAGGGGGGATCGGGTCGATCTCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCTAAGCGCCCA
324 ACGCAGGGGGGACCGAGCCGATC-CCCGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCA
*
15573132 C-CTGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
388 CAC-G-CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* *
15573196 CCGAGGGTTGGGGCACCATCGTCAGAGCATCACCGGAACATCGTCGGAGAGCCTAACCGACGGCA
451 TCGAGGGTTGGGGCACCA---TC--A-C--CA---GAGCATCGTCGGAGAGCCTAACCGACGGCA
* * * * *
15573261 TTGGGGGTTCCGGCGATTGGTGGGCTAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
505 TTGGGGGTTTCGACGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
15573326 TTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
570 TTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
15573391 TTTAAGATTTGATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
635 TTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* **
15573456 AACGGTGACAAAATCTTCTCCACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCC
700 AACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCC
* *
15573521 CATTTCGTGGGCT-GCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
765 CATTTCGTGGGTTGGCC-TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGG
* * * * * *
15573585 GTTGTGATAGCGGGATCTGCAGTACGTAGTGGGTGATCAGGTCGAT-TCCTGGCTTACGCATTAT
828 GTTGTGACAGCGGGATC-GCAGCACGCAGTGGGGGATCGGGTCGATCTCC-GGCTTGCGCATTAT
15573649 GCCTCTCCGACCGGC
891 GCCTCTCCGACCGGC
* * * * *
15573664 TGAGTGCCCGCACGCTCATTTCATGAGTTGACTAAGGTATATGGAGTTCATCCCTAGTCTAAGCA
1 TGAGCGCCCGCACACTCATTTCATGAGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * *
15573729 TATAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGCTGCGGCAGCAAGATCGGCAGCA
66 TATAGAGTTCATTCCCAGTCTAAGATCGAACCGGA-CAAGGGTTGCGGCAGCAAGATCGACAGCA
* ** * *
15573794 CGCAGGGGGGATCGGGTCGATCCTTGCCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGTGCCTGC
130 CGTAGGGGGGATCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGTGCCCGC
*
15573859 ACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
194 ACACCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
* * *
15573924 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGACCGATAGCGGGATCGGTAGC
259 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGGACCGACAGCGGGATCGGTAGC
* * * **
15573989 ACGCAGAGGGGACCGAGCCGATCCCCAGCTTGTGGATTCTGCCTCTCCGGCCCACT-AGCGCCCA
324 ACGCAGGGGGGACCGAGCCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCA
* * *
15574053 CACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAATTCGTTCCTTGTCTAAGCCCCAGCCGGAT
388 CACG-CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAT
* * ** *
15574118 CGAAGGTTAGGGCACCATCACCAGAGCATCGTCGGAGAGCCTAATTGGCGGCATTGGGGGTTTCG
452 CGAGGGTTGGGGCACCATCACCAGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTTCG
* *
15574183 ATGATTTGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
517 ACGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
15574248 TTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTA
582 TTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTA
* *
15574313 TAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTTTCAAACGATCACAAA
647 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAA
* * *
15574377 ATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTCGTGGGT
712 ATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCCCATTTCGTGGGT
* * *
15574442 TGGCCTAGGCATAGGGAGTTCATTCCATGACTAAGCCCTAGTCGGACCGAGGGTTGTGACAACGG
777 TGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGGGTTGTGACAGCGG
* * *
15574507 GATCGATAGCATGCAGTGGGGGATCGGGTCGATCTCCGGCTTGCGCATTATGCCTCTCCGACTGG
841 GATCG-CAGCACGCAGTGGGGGATCGGGTCGATCTCCGGCTTGCGCATTATGCCTCTCCGACCGG
15574572 C
905 C
* * * *
15574573 TGAGCGCCCGCACACTCTTTTCATGAGTTGACTAAGGTATACGAAGTTCATCCCCAGCCTAAGCA
1 TGAGCGCCCGCACACTCATTTCATGAGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * *
15574638 TACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGTTTGTGGCAGCAAGATCGACAGTA
66 TATAGAGTTCATTCCCAGTCTAAGATCGAACCGGA-CAAGGGTTGCGGCAGCAAGATCGACAGCA
* * * *
15574703 CGTAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTTGGCTGGCTGAGCGCCCGT
130 CGTAGGGGGGATCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGTGCCCGC
* * **
15574768 ACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAGTTCA
194 ACACCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA
*
15574833 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAATAGCAGGACCGACAGCGGGATCGGTAGC
259 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGGACCGACAGCGGGATCGGTAGC
* * * *
15574898 ACGCAGGGGGGACCAAGCCGATCCCCGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCACCCAC
324 ACGCAGGGGGGACCGAGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCAC
* * *
15574963 AAGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATC
389 ACGCC-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC
* *
15575028 GAGGGTTGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAACCGACGGTATTGGGGG-TTCGA
453 GAGGGTTGGGGCACCATCACCAGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTTCGA
*
15575092 CGATTGGCGGGCCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
518 CGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
15575157 TGGCCCCGTATCAGTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG-TTTTAT
583 TGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTAT
*
15575221 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAA
648 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAA
* *
15575286 TCTTCTCCACTTTAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCCCATTTCATGGGTT
713 TCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCCCATTTCGTGGGTT
* * * * **
15575351 GGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCTGGACTGAGGGTTGTGAGAGCAAG
778 GGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-GGACCGAGGGTTGTGACAGCGGG
* * *
15575416 ATCGGCAGCACACAGT-GGGGATTGGGTCGATAC-CCGGCTTGCGCATTATGCCTCTCCGGCCGG
842 ATC-GCAGCACGCAGTGGGGGATCGGGTCGAT-CTCCGGCTTGCGCATTATGCCTCTCCGACCGG
15575479 C
905 C
* * * * * * *
15575480 TCAACACCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 TGAGCGCCCGCACACTCATTTCATGAGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAG
15575543 ATCGGATCGG
Statistics
Matches: 1668, Mismatches: 198, Indels: 41
0.87 0.10 0.02
Matches are distributed among these distances:
907 143 0.09
908 295 0.18
909 615 0.37
910 208 0.12
913 2 0.00
915 1 0.00
916 1 0.00
918 2 0.00
921 82 0.05
922 316 0.19
923 3 0.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (905 bp):
TGAGCGCCCGCACACTCATTTCATGAGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TATAGAGTTCATTCCCAGTCTAAGATCGAACCGGACAAGGGTTGCGGCAGCAAGATCGACAGCAC
GTAGGGGGGATCGGGCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGTGCCCGCAC
ACCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGGACCGACAGCGGGATCGGTAGCAC
GCAGGGGGGACCGAGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCACAC
GCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
GGTTGGGGCACCATCACCAGAGCATCGTCGGAGAGCCTAACCGACGGCATTGGGGGTTTCGACGA
TTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCT
TCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCCCATTTCGTGGGTTGGC
CTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGGTTGTGACAGCGGGATCG
CAGCACGCAGTGGGGGATCGGGTCGATCTCCGGCTTGCGCATTATGCCTCTCCGACCGGC
Found at i:15574781 original size:184 final size:184
Alignment explanation
Indices: 15574524--15574867 Score: 451
Period size: 184 Copynumber: 1.9 Consensus size: 184
15574514 AGCATGCAGT
* * * *
15574524 GGGGGATCGGGTCGATCTCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACACT
1 GGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACACT
* *
15574589 CTTTTCATGAGTTGACTAAGGTATACGAAGTTCATCCCCA-GCCTAAGCATACAGAGTTCATTCC
66 CTTTTCATGAGTTGACTAAGGCATACGAAGTTCAT-CCCATGCCTAAGCATACAAAGTTCATTCC
* *
15574653 CAGTCTAAGATC-GAACCGGACCGAGGTTTGTGGCAGCAAGATCGACAGTACGTAG
130 CAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGTACGTAG
* ** * * *
15574708 GGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTTGGCTGGCTGAGCGCCCGTACGC-
1 GGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACACT
* * * * * * *
15574772 CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCC
66 CT-TTTCATGAGTTGACTAAGGCATACGAAGTTCATCCCATGCCTAAGCATACAAAGTTCATTCC
15574837 CAGTCTAAGATCAGACCAGACCGAGGGTTGT
130 CAGTCTAAGATCAGACCAGACCGAGGGTTGT
15574868 AATAGCAGGA
Statistics
Matches: 136, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
183 5 0.04
184 130 0.96
185 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
GGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACACT
CTTTTCATGAGTTGACTAAGGCATACGAAGTTCATCCCATGCCTAAGCATACAAAGTTCATTCCC
AGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGTACGTAG
Found at i:15575703 original size:26 final size:26
Alignment explanation
Indices: 15575674--15575726 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15575664 GTTGGCTTAG
15575674 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15575700 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15575726 G
1 G
15575727 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15576412 original size:26 final size:26
Alignment explanation
Indices: 15576376--15576428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15576366 GTTGACTTAG
*
15576376 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15576402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15576428 G
1 G
15576429 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15576762 original size:158 final size:157
Alignment explanation
Indices: 15576402--15576903 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 157
15576392 CCCAATCTAA
* * * *
15576402 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAAGATTG-C
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* * *
15576465 TAGCATGCAGAGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCACTTCGATCGACTGAGCG
65 -AGCATGCAGAGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATAG-CTGAGCG
* *
15576530 CCCGCATGC-CTGTTTCATGGGTTGACTTAG
128 CCCGCACGCTC-GTTTCGTGGGTTGACTTAG
* * * ** ** * * *
15576560 GCATAGGGAGTTCATTCCATCTCTAAGCCCCA-ATTGGACCGAGGGTTG-TGCCAGCGGGACCGA
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCAG-CAGCAGGATCGA
* * * * * * * * *
15576623 CAGCATGCAGAGGTGGATCAGGTCGATCCCCCACTTTCGTATTATACCTCTCCGGTAGCTCATCA
64 CAGCATGCAGAGG-GGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATAGCTGAGCG
*
15576688 CCCGCACGCTCGTTTCGTGGGTTGACTTAC
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
15576718 GCATACGAAGTTCATTCACA-GTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGTAGGATCGAC
1 GCATACGAAGTTCATTC-CATGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* * ***
15576782 AGCATGCAGCGGGGGACCGGGTCGATCCCCGACTTGCGCT-TTCTGCCTCTCCAGCCGGCTGAGC
65 AGCATGCAG-AGGGGATCGGGTCGATCCCCGACTTGCG-TATTCTGCCTCTCC-GATAGCTGAGC
* * *
15576846 GCCTGGACGCTCGTTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
15576877 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
15576904 CATATGGAGT
Statistics
Matches: 274, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 168 0.61
159 100 0.36
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCATGCAGAGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTCTCCGATAGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15577287 original size:26 final size:26
Alignment explanation
Indices: 15577257--15577309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15577247 GTTGACCTAG
15577257 GCATACAGAGTTCATCTCC-AGTCTAA
1 GCATACAGAGTTCAT-TCCTAGTCTAA
*
15577283 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15577309 G
1 G
15577310 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15577649 original size:26 final size:26
Alignment explanation
Indices: 15577600--15577650 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15577590 GTTGGCTTAG
**
15577600 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15577626 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15577651 TGATTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15578913 original size:59 final size:59
Alignment explanation
Indices: 15578842--15579193 Score: 428
Period size: 59 Copynumber: 5.9 Consensus size: 59
15578832 TTTTGTGCAG
* * **
15578842 GGAAAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTATTTTTAA
*
15578901 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAAT-TGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATAT--TTTTTTTGAAATTTTATTTTTAA
* * * *
15578961 GGAAAATTGATACTTTCAATTTTTCCCCAAAAATA-TTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAA-TTTTATTTTTAA
** *
15579020 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAA-CCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTGAAATTTTATTTTTAA
* * **
15579078 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAACCCTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATA-TTTTTTTTGAAATTTTATTTTTAA
* *
15579139 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTTTTG-ATTTTTATTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATT-TTTTTTGAAATTTTATTT
15579194 AAAGAAAATA
Statistics
Matches: 255, Mismatches: 25, Indels: 26
0.83 0.08 0.08
Matches are distributed among these distances:
58 50 0.20
59 92 0.36
60 63 0.25
61 50 0.20
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTATTTTTAA
Found at i:15579061 original size:119 final size:115
Alignment explanation
Indices: 15578842--15579181 Score: 466
Period size: 119 Copynumber: 2.9 Consensus size: 115
15578832 TTTTGTGCAG
* * * * *
15578842 GGAAAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTAATTTCGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATA-CTTTTTTGAAATTTTATTTTCAAGGAAAA
15578907 TTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCTCAAAAA---ATTTTTTTGAAAATTTATTTTTAA
* *
15578961 GGAAAATTGATACTTTCAATTTTTCCCCAAAAATA-TTTTTTGGAAACTTTTATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATACTTTTTT-GAAA-TTTTATTTTCAAGGAAA
*
15579025 ATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAA
64 ATTGATACTTTCAACTTTTCCTCAAAAA-ATTTTTTTGAAAATTTATTTTTAA
* *
15579078 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAACCCTTTTTTGAAATTTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATA--CTTTTTTGAAATTTTATTTTCAAGGAA
*
15579143 AATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTTT
63 AATTGATACTTTCAACTTTTCCTCAAAAA-ATT-TTTTT
15579182 TGATTTTTAT
Statistics
Matches: 200, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
117 54 0.27
118 11 0.05
119 120 0.60
120 9 0.05
121 6 0.03
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (115 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAAATACTTTTTTGAAATTTTATTTTCAAGGAAAAT
TGATACTTTCAACTTTTCCTCAAAAAATTTTTTTGAAAATTTATTTTTAA
Found at i:15579141 original size:178 final size:179
Alignment explanation
Indices: 15578842--15579180 Score: 515
Period size: 178 Copynumber: 1.9 Consensus size: 179
15578832 TTTTGTGCAG
* * * *
15578842 GGAAAATTGATACTTTTAACTTTTCCCTAAAAATATTTTTTTTGAAATTTTAATTTCGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATACTTTTTTTGAAAATTTAATTTCAAGGAAAA
** *
15578907 TTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
66 TTGATACTTTCAACTTTTCCTCAAAAATAAACTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
*
15578972 ACTTTCAATTTTTCCCCAAAAATATT-TTTTGGAAACTTTTATTTTCAA
131 ACTTTCAACTTTTCCCCAAAAATATTCTTTTGGAAACTTTTATTTTCAA
* * *
15579020 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAA-CCTTTTTTTGAAAATTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATACTTTTTTTGAAAATTTAATTTCAAGGAAA
*
15579083 ATTGATACTTTCAACTTTTCCTCAAAAA-AAACCCTTTTTTGAAATTTTATTTTTAAGGAAAATT
65 ATTGATACTTTCAACTTTTCCTCAAAAATAAA--CTTTTTTGAAAATTTATTTTTAAGGAAAATT
15579147 GATACTTTCAACTTTTCCCCAAAAATATTCTTTT
128 GATACTTTCAACTTTTCCCCAAAAATATTCTTTT
15579181 TTGATTTTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
176 1 0.01
177 55 0.38
178 85 0.59
179 4 0.03
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.45
Consensus pattern (179 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATACTTTTTTTGAAAATTTAATTTCAAGGAAAA
TTGATACTTTCAACTTTTCCTCAAAAATAAACTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
ACTTTCAACTTTTCCCCAAAAATATTCTTTTGGAAACTTTTATTTTCAA
Found at i:15579236 original size:22 final size:21
Alignment explanation
Indices: 15579208--15579280 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
15579198 AAAATAAAAT
*
15579208 AATAAAACAAAATAAAAGTGAA
1 AATAAAACAAAATAAAA-AGAA
15579230 AATAAAA-AAAATAATAAAGAA
1 AATAAAACAAAATAA-AAAGAA
* *
15579251 AAGTAAAACCAAGATAAAAAATAA
1 AA-TAAAA-CAAAAT-AAAAAGAA
15579275 AATAAA
1 AATAAA
15579281 GGTAAAAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
21 12 0.28
22 14 0.33
23 4 0.09
24 11 0.26
25 2 0.05
ACGTcount: A:0.75, C:0.04, G:0.07, T:0.14
Consensus pattern (21 bp):
AATAAAACAAAATAAAAAGAA
Found at i:15580230 original size:14 final size:14
Alignment explanation
Indices: 15580213--15580328 Score: 58
Period size: 14 Copynumber: 8.1 Consensus size: 14
15580203 TTATAGGATA
15580213 AATAAAAAAATAAT
1 AATAAAAAAATAAT
*
15580227 AATAATAACAGATATAT
1 AATAA-AA-AAATA-AT
* * *
15580244 AATTAGATAAATAAA
1 AA-TAAAAAAATAAT
* *
15580259 AATACAAAAATAAAA
1 AATAAAAAAAT-AAT
15580274 AATAAAAAAATAA-
1 AATAAAAAAATAAT
** *
15580287 AA-AAAATTATATT
1 AATAAAAAAATAAT
* *
15580300 AAT-AAATAGTAAT
1 AATAAAAAAATAAT
*
15580313 AATAAATAAATAAT
1 AATAAAAAAATAAT
15580327 AA
1 AA
15580329 ATACATAGGA
Statistics
Matches: 77, Mismatches: 17, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
12 7 0.09
13 14 0.18
14 23 0.30
15 18 0.23
16 8 0.10
17 5 0.06
18 2 0.03
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.25
Consensus pattern (14 bp):
AATAAAAAAATAAT
Found at i:15580240 original size:28 final size:27
Alignment explanation
Indices: 15580148--15580245 Score: 71
Period size: 22 Copynumber: 3.6 Consensus size: 27
15580138 AACCTTCCAA
*
15580148 AATAAAAATCAAATAAAAAAATAATAGAT
1 AATAAAGAT-AAATAAAAAAATAATA-AT
15580177 AATTAGAAAAGATAAATAAAAAAAT-AT--T
1 AA-T---AAAGATAAATAAAAAAATAATAAT
*
15580205 -AT-AGGATAAATAAAAAAATAATAAT
1 AATAAAGATAAATAAAAAAATAATAAT
*
15580230 AATAACAGATATATAA
1 AATAA-AGATAAATAA
15580246 TTAGATAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 21
0.69 0.05 0.26
Matches are distributed among these distances:
22 16 0.29
23 2 0.04
25 1 0.02
26 3 0.05
27 2 0.04
28 9 0.16
29 2 0.04
30 1 0.02
31 2 0.04
32 12 0.22
33 5 0.09
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.23
Consensus pattern (27 bp):
AATAAAGATAAATAAAAAAATAATAAT
Found at i:15580274 original size:7 final size:7
Alignment explanation
Indices: 15580252--15580290 Score: 53
Period size: 8 Copynumber: 5.4 Consensus size: 7
15580242 ATAATTAGAT
15580252 AAAT-AA
1 AAATAAA
15580258 AAATACAA
1 AAATA-AA
15580266 AAATAAA
1 AAATAAA
15580273 AAATAAAA
1 AAAT-AAA
15580281 AAATAAA
1 AAATAAA
15580288 AAA
1 AAA
15580291 AATTATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 4 0.13
7 12 0.40
8 14 0.47
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.13
Consensus pattern (7 bp):
AAATAAA
Found at i:15580276 original size:15 final size:15
Alignment explanation
Indices: 15580252--15580290 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
15580242 ATAATTAGAT
*
15580252 AAAT-AAAAATACAA
1 AAATAAAAAATAAAA
15580266 AAATAAAAAATAAAA
1 AAATAAAAAATAAAA
15580281 AAATAAAAAA
1 AAATAAAAAA
15580291 AATTATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.13
Consensus pattern (15 bp):
AAATAAAAAATAAAA
Found at i:15580291 original size:8 final size:8
Alignment explanation
Indices: 15580256--15580291 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
15580246 TTAGATAAAT
*
15580256 AAAAATAC
1 AAAAATAA
15580264 AAAAAT-A
1 AAAAATAA
15580271 AAAAATAA
1 AAAAATAA
15580279 AAAAATAA
1 AAAAATAA
15580287 AAAAA
1 AAAAA
15580292 ATTATATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:15580382 original size:8 final size:8
Alignment explanation
Indices: 15580369--15580407 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
15580359 TAAAATATAG
*
15580369 AATAAAAT
1 AATAAAAA
15580377 AATAAAAA
1 AATAAAAA
15580385 AAT-AAAA
1 AATAAAAA
15580392 AATAACAAA
1 AATAA-AAA
15580401 AATAAAA
1 AATAAAA
15580408 TTGGACTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 8 0.29
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:15580390 original size:16 final size:17
Alignment explanation
Indices: 15580369--15580408 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
15580359 TAAAATATAG
15580369 AATAAAATAATAA-AAA
1 AATAAAATAATAACAAA
15580385 AATAAAA-AATAACAAA
1 AATAAAATAATAACAAA
15580401 AATAAAAT
1 AATAAAAT
15580409 TGGACTTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAATAATAACAAA
Found at i:15580621 original size:6 final size:6
Alignment explanation
Indices: 15580574--15580620 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
15580564 TTTTTTATAT
* * *
15580574 TTTTTG TTTTTT TTGTTTG CTTTTG TTTTTG GTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TT-TTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
15580621 TAACCAAAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
5 5 0.15
6 25 0.74
7 4 0.12
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:15580842 original size:44 final size:42
Alignment explanation
Indices: 15580629--15580894 Score: 270
Period size: 44 Copynumber: 6.1 Consensus size: 42
15580619 TTTAACCAAA
* * * *
15580629 GCTCCTCTAAACAAAGGCTCAACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* * * *
15580671 GCTACTCTAAACAGAGGCTCAACGAGTTTG--AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
15580711 GGCTCCTCCTACAACAAAGGCACCCACGACTTTTG-AAAAGTAAATCT
1 -GCTCCT-CTA-AACAGAGGCA-CCACGAC-TTTGAAAAAGTAAAT-T
* *
15580758 GCTCCTCTAAAC-GAGGCACCATGAACTTTGGAAAAGTAAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGAAAAAGT-AAATT
* *
15580801 ACTCCTTTAAACAGAGGCACCACGACTTTGAAAAAGATAAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAG-T-AAATT
*
15580845 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTG-AAAAAGTAAATT
15580889 GCTCCT
1 GCTCCT
15580895 TGACCAATCA
Statistics
Matches: 192, Mismatches: 18, Indels: 26
0.81 0.08 0.11
Matches are distributed among these distances:
40 9 0.05
41 5 0.03
42 38 0.20
43 43 0.22
44 64 0.33
45 12 0.06
46 20 0.10
47 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:15583009 original size:26 final size:26
Alignment explanation
Indices: 15582979--15583031 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15582969 GTTGACTTAG
15582979 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
* *
15583005 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15583031 G
1 G
15583032 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15583291 original size:155 final size:156
Alignment explanation
Indices: 15583054--15583501 Score: 408
Period size: 155 Copynumber: 2.9 Consensus size: 156
15583044 CGAGGGTTAC
* * *** * * * *
15583054 GGCAGCAGGATCGACAGTACGCAGGGGGGACCGGGCTGATCCCCGACTTGCACTTTCTGCCTCTC
1 GGCAGCAGGATCGACAGCACGCAGGGGGGATCACCCCGAT-CCCG-CTTGCGCATTATGCCTCTC
*** * * * *
15583119 TGGTTGGCTAAGTACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 -GACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* *
15583184 TCTAAGCCCCAG-CCAGAC-CAGGGTTGT
128 TCTAAGCACCAGACCAGACTCAGGGCTGT
* *** *
15583211 GGCAGCGGGA-CGACAGCA--CAGAGGGGGATCGGGCCGATCCCCGGTTTGCGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGCAG-GGGGGATCACCCCGAT-CCC-GCTTGCGCATTATGCCTC-
* * * *
15583273 TCGACCGGCTCAGCACCCGCACGCTCATTTTGTTGGTTGACTTAGGCAT-GCGGAGTTCATTCCC
62 TCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATT-CC
* * * *
15583337 A-GTCTAAG-ATCAGATCGGACTGAGGGCTGT
125 ATGTCTAAGCACCAGACCAGACTCAGGGCTGT
* * *
15583367 GGTAGCAGGATCGACAGCACGCAGGGGGGATCACCCCGGTCCCGCTTGCGCATTCTGCCTCTCGA
1 GGCAGCAGGATCGACAGCACGCAGGGGGGATCACCCCGATCCCGCTTGCGCATTATGCCTCTCGA
* * ** *
15583432 TCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
15583497 AAGCA
131 AAGCA
15583502 TACGGAGTTC
Statistics
Matches: 236, Mismatches: 42, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
154 10 0.04
155 146 0.62
156 45 0.19
157 20 0.08
158 12 0.05
159 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (156 bp):
GGCAGCAGGATCGACAGCACGCAGGGGGGATCACCCCGATCCCGCTTGCGCATTATGCCTCTCGA
CCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCACCAGACCAGACTCAGGGCTGT
Found at i:15584017 original size:159 final size:157
Alignment explanation
Indices: 15583720--15584149 Score: 524
Period size: 159 Copynumber: 2.7 Consensus size: 157
15583710 TAGGATCGGT
* * * * *
15583720 AGCACGCAGGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGATTGAGCA
1 AGCACGCAGAGGGGGACCAGGCTGAT-CCCGACTTGCGCATTCTGCCTCTCTG-GCGGTTGAGCG
* *
15583785 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGACCCAATC
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCAACC
* * **
15583850 GGATCGAGGGTTGTGGCAGCGGGACCGAC
129 GGACCGAGGGTTGCGGCAGCAAGACCGAC
* * * * *
15583879 AGCACGCAGAGGGGGACCAGGCTGATCCCTGACTTGCGCATTATGCCTCTTTGGCAGGCTCAGTG
1 AGCACGCAGAGGGGGACCAGGCTGATCCC-GACTTGCGCATTCTGCCTCTCTGGC-GGTTGAGCG
* * * *
15583944 CCCGCACACTCGTTTCATGGGTTGAG-TTAGGCTTACGGAGTTCATTCCCAGTCTAAGA-TCAGA
64 CCCGCACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCA-A
**
15584007 CCGGACCGAGGGTTGCGGCAGCAAGATTGAC
127 CCGGACCGAGGGTTGCGGCAGCAAGACCGAC
* * * *
15584038 AGCACGCAAAAGGAGGACCAGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGTC-GTTGAGCG
1 AGCACGC-AGAGGGGGACCAGGCTGATCCCGACTTGCGCATTCTGCCTCTCTGG-CGGTTGAGCG
*
15584102 CCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
15584150 TTATCTAAGC
Statistics
Matches: 230, Mismatches: 34, Indels: 15
0.82 0.12 0.05
Matches are distributed among these distances:
157 1 0.00
158 54 0.23
159 154 0.67
160 21 0.09
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
AGCACGCAGAGGGGGACCAGGCTGATCCCGACTTGCGCATTCTGCCTCTCTGGCGGTTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCAACCGG
ACCGAGGGTTGCGGCAGCAAGACCGAC
Found at i:15584182 original size:26 final size:26
Alignment explanation
Indices: 15584132--15584184 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15584122 GTTGGCTTAG
*
15584132 GCATACGGAGTTCATTCCTTATCTAA
1 GCATACGGAGTTCATTCCTCATCTAA
*
15584158 GCATCCGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCATTCCTCA-TCTAA
15584184 G
1 G
15584185 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTCATCTAA
Found at i:15584892 original size:158 final size:154
Alignment explanation
Indices: 15584468--15584987 Score: 450
Period size: 158 Copynumber: 3.3 Consensus size: 154
15584458 ACCGGCTTGC
*
15584468 GCACCCGCACGCTCATTT--TGAGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCA
1 GCACCCGCACGCTCATTTCGTG-GGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
15584531 GATCGGACT-AAGGGTTGAGGTAGCAAGATTGACAGCATGCA-GGGGGACTTGGTCGATCCCCGG
65 GGTCGGACTGAA-GGTTGA-GCAGCAAGATCGACAGCACGCAGGGGGGA-TCGGCCGATCCCCAG
* *
15584594 CTTGCGCATTCTGCCTCTCCGACCGCATAA
127 CTTGCGCATT-TGCCTCTTCGGCCGC-TAA
* * * **
15584624 GCACCCGCACGC-CTATTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
1 GCACCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-AT
* * * * ** * *
15584687 CA-GTCGGACCGAGGGTTGTGGCAACGGGA-CGGCAGCACGTAGAGGGGGATCGAGCCGATCCCC
63 CAGGTCGGACTGAAGGTTG-AGCAGCAAGATCGACAGCACGCAG-GGGGGATCG-GCCGATCCCC
* *
15584750 AGCTTGCGCATTATGCCTCTTCGGCATGCTCA
125 AGCTTGCGCATT-TGCCTCTTCGGC-CGCTAA
* * *
15584782 GCACTCGCACGCTCATTTCATGGGTTGACTTATGCATAC-AGAGTTCATTCCCAGTCTAAGATCA
1 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCA
* * * *
15584846 GGCCGGACTGAAGGTTGCAGCAGCATGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCATC
65 GGTCGGACTGAAGGTTG-AGCAGCAAGATCGACAGCACGCAGGGGGGATC-GGCCGATCCCCAGC
* *
15584911 TT-CTG-ATTTCGCCTCTTAGGCCGGCTGA
128 TTGC-GCATTT-GCCTCTTCGGCC-GCTAA
* * *
15584939 GCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
1 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
15584988 GCATGTCTAA
Statistics
Matches: 288, Mismatches: 55, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
155 1 0.00
156 28 0.10
157 109 0.38
158 132 0.46
159 18 0.06
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (154 bp):
GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG
GTCGGACTGAAGGTTGAGCAGCAAGATCGACAGCACGCAGGGGGGATCGGCCGATCCCCAGCTTG
CGCATTTGCCTCTTCGGCCGCTAA
Found at i:15584973 original size:315 final size:324
Alignment explanation
Indices: 15584222--15584998 Score: 820
Period size: 315 Copynumber: 2.4 Consensus size: 324
15584212 CTGGACCAGT
* * * * *
15584222 AGCAGGATCGATAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCTTTCTACCTCTTCGG
1 AGCAAGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGATTTCTGCCTCTTCGG
* * *
15584287 CCAGCTGAGCTCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CC-GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
*
15584352 AAGCCCCAGCCGAATCGAGGGTTATGAAGTAGGACTGGTAAGCGGGAATCGGCAGCACACAGAGG
130 AAGCCCCAGCCGAACCGAGGGTTAT--AGTAGGAC--G-AAGCGGGAATCGGCAGCACACAGAGG
* * ** ** * *
15584417 GGGATCGGGCTGATCCCGGGCTTTTGTATTATGCATCTCCGACCGGCTTGCGCACCCGCACGCTC
190 GGGATCGAGCCGATCCCCAGCTTGCGCATTATGCATCTCCGACAGGCTTGCGCACCCGCACGCTC
*
15584482 ATTTTGAGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGATCGGACTAAGGGTT
255 ATTTTGAGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGACCGGACTAAGGGTT
*
15584547 GAGGT
320 GAGGC
* ** * *
15584552 AGCAAGATTGACAGCATGCA-GGGGGACTTGGTCGATCCCCGGCTTGCGCA-TTCTGCCTCTCCG
1 AGCAAGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCG-ATTTCTGCCTCTTCG
* * * * *
15584615 ACCGCATAAGCACCCGCACGC-CTATTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGT
65 GCCGC-TGAGCACCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * **
15584679 CTAAGCCCCAGTCGGACCGAGGG-T-T-GT-GG-C-AA-CGGG-A-CGGCAGCACGTAGAGGGGG
128 CTAAGCCCCAGCCGAACCGAGGGTTATAGTAGGACGAAGCGGGAATCGGCAGCACACAGAGGGGG
* * * * *
15584735 ATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCATGC-T-CAGCACTCGCACGCTCAT
193 ATCGAGCCGATCCCCAGCTTGCGCATTATGCATCTCCGACAGGCTTGC-GCACCCGCACGCTCAT
* * *
15584798 TTCATG-GGTTGACTTATGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGGCCGGACTGAA-GG
257 TT--TGAGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGATCAGACCGGACT-AAGGG
15584860 TTGCA-GC
318 TTG-AGGC
* * ** *
15584867 AGCATGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCATCTT-CTGATTTC-GCCTCTTAG
1 AGCAAGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGC-GATTTCTGCCTCTTCG
* * *
15584930 GCCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTGCATGTC
65 GCC-GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
15584995 TAAG
129 TAAG
15584999 GATATGGAGT
Statistics
Matches: 374, Mismatches: 59, Indels: 43
0.79 0.12 0.09
Matches are distributed among these distances:
313 1 0.00
314 19 0.05
315 182 0.49
316 33 0.09
317 4 0.01
318 2 0.01
322 1 0.00
323 2 0.01
324 2 0.01
327 1 0.00
328 3 0.01
329 107 0.29
330 17 0.05
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (324 bp):
AGCAAGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGATTTCTGCCTCTTCGG
CCGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCCAGCCGAACCGAGGGTTATAGTAGGACGAAGCGGGAATCGGCAGCACACAGAGGGGGATC
GAGCCGATCCCCAGCTTGCGCATTATGCATCTCCGACAGGCTTGCGCACCCGCACGCTCATTTTG
AGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGACCGGACTAAGGGTTGAGGC
Found at i:15586181 original size:158 final size:158
Alignment explanation
Indices: 15585762--15586222 Score: 487
Period size: 158 Copynumber: 2.9 Consensus size: 158
15585752 GGATCGAAGG
* * * *
15585762 TTGCGGTAGCAAGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTACC
1 TTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACC
* * * * * * *
15585827 TCTCCGGTCCGGCTGAGCACCCGCATGCCCATTTCATGGGTTGGCCTAGGCATAGGGAGTTCATT
66 TCTTCGGT-CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* *
15585892 CCATGTCTAAGCCCCAGCCAGACCGAGGG
130 CCATGTCTAAGCACCAGCCAGACCGAGGA
* * * * * * * * *
15585921 TTGTGGCAGCGGGACCGGCAGCACGCAGAAGGGGGA-CTGGGCTGATCACCGGCTTGTGCATTAT
1 TTGCGGTAGCAGGATCGACAGCACGCAG--GGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCT
* * * * * * ** * *
15585985 GCCTCTTCGATCGGCTCAGTGCCCGCACACTTGTTTCATGGGTTTACTTATGCATATGGAGTTCA
63 ACCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* *** *
15586050 TTCCCA-GTCTAAG-ATCAGATTGGACTGAGGA
128 TT-CCATGTCTAAGCACCAG-CCAGACCGAGGA
* * *
15586081 TTGCGGTAGCAGGATCAACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGGGCATTCTACC
1 TTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACC
15586146 TCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
66 TCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
15586211 CATGTCTAAGCA
131 CATGTCTAAGCA
15586223 TACGGAGTTC
Statistics
Matches: 237, Mismatches: 57, Indels: 16
0.76 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 91 0.38
159 26 0.11
160 80 0.34
161 37 0.16
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
TTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACC
TCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGCACCAGCCAGACCGAGGA
Found at i:15586224 original size:26 final size:26
Alignment explanation
Indices: 15586194--15586246 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15586184 GTTGGCTTAG
15586194 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15586220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15586246 G
1 G
15586247 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15587206 original size:183 final size:184
Alignment explanation
Indices: 15586897--15587299 Score: 515
Period size: 183 Copynumber: 2.2 Consensus size: 184
15586887 TCCGCACTTT
*
15586897 CATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCC
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCC
* * *
15586962 AACGTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGAATCAGCAGCACGCAGGGGGGATCGGG
66 AACGTAAGATTAGACCGGACCGAGGGTTACGGTAGCAGAATCAGCAGCACACAGGGGGGATCAGG
* * *
15587027 TCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCC-ACACTCT
131 CCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCGACAC-CC
* * * *
15587081 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGTATAC-GAGTTCATTCCC
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCC
* * * * * * *
15587145 AGTC-TAAGATTGGACCGGACTGAGGGTTACGGTAGCAGGATCGGCAGCATACAGTGGGGATCAG
66 A-ACGTAAGATTAGACCGGACCGAGGGTTACGGTAGCAGAATCAGCAGCACACAGGGGGGATCAG
** * ** *
15587209 GCCGATCCCCGGCTTGTGTATTCTACCTCTCCGGTCGGCTGAGCACCCGTACGCCC
130 GCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCG-ACACCC
* * *
15587265 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
15587300 TCCATGTCTA
Statistics
Matches: 188, Mismatches: 28, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
183 105 0.56
184 80 0.43
185 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCC
AACGTAAGATTAGACCGGACCGAGGGTTACGGTAGCAGAATCAGCAGCACACAGGGGGGATCAGG
CCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCACCCGACACCC
Found at i:15587632 original size:26 final size:26
Alignment explanation
Indices: 15587596--15587648 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15587586 GTTGGCCTAG
15587596 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15587622 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15587648 G
1 G
15587649 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15588357 original size:26 final size:26
Alignment explanation
Indices: 15588327--15588379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588317 GTTGACTTAG
15588327 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15588353 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15588379 G
1 G
15588380 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15588648 original size:159 final size:159
Alignment explanation
Indices: 15588388--15588688 Score: 354
Period size: 159 Copynumber: 1.9 Consensus size: 159
15588378 AGATCGGATA
* * *
15588388 GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGAGGGGACCGGACTGATCCCCGGCTTA
1 GGACCGAGGGTTGCGGCAGCAGGACCGACAGCAAGCAGGAGGGGACCGGACCGATCCCCGGCTTA
* * * * * * * *
15588453 CGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGTCATAG
66 CGCATTATGCCTCTCCGGCCGACTCAACGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAC
*
15588518 GGAGTTCATTCCATGCCTAATCTCCAGCT
131 AGAGTTCATTCCATGCCTAATCTCCAGCT
* * * *
15588547 GGACCGAGGGTTGTGGCAGCAGGAACCG-TAGCAAGCA-GAGGGGGACTGGGCCGATCCCCGGCT
1 GGACCGAGGGTTGCGGCAGCAGG-ACCGACAGCAAGCAGGA-GGGGACCGGACCGATCCCCGGCT
* * * * ** * *
15588610 TGCGCATTATGCCTCTTCTGTCGGTTCAACGCCCGCACGCTCATTTCATGGGTTGACTTTGGCAT
64 TACGCATTATGCCTCTCCGGCCGACTCAACGCCCGCACGCCCATTTCATGGGTTGACTTAGGCAT
15588675 ACAGAGTTCATTCC
129 ACAGAGTTCATTCC
15588689 CAGTCTAAGA
Statistics
Matches: 116, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
158 2 0.02
159 111 0.96
160 3 0.03
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.22
Consensus pattern (159 bp):
GGACCGAGGGTTGCGGCAGCAGGACCGACAGCAAGCAGGAGGGGACCGGACCGATCCCCGGCTTA
CGCATTATGCCTCTCCGGCCGACTCAACGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATAC
AGAGTTCATTCCATGCCTAATCTCCAGCT
Found at i:15588857 original size:26 final size:26
Alignment explanation
Indices: 15588828--15588880 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588818 GTTGGTTTAG
15588828 GCATACGAAGTTCAAT-CCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
* *
15588854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
15588880 G
1 G
15588881 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:15589229 original size:26 final size:26
Alignment explanation
Indices: 15589193--15589245 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15589183 GTTGACTTAG
*
15589193 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15589219 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15589245 G
1 G
15589246 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15589693 original size:158 final size:156
Alignment explanation
Indices: 15589219--15589720 Score: 560
Period size: 158 Copynumber: 3.2 Consensus size: 156
15589209 CCCAATCTAA
* * * *
15589219 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * **
15589283 AGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTACAAATTCTACCTCTCCGACTGGCTGAGCGC
65 AGCACACAGGGGGGACCGGGTTGATCCC-GGCTTGCGCATTCTACCTCTCCGAC-GGCTGAGCGC
* * *
15589348 CCACACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
15589377 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * *
15589441 AGCACACAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCG
65 AGCACACAG-GGGGGACCGGGTTGAT-CCCGGCTTGCGCATTCTACCTC-TCCGACGGCTGAGCG
*
15589506 CCCGCACGCTCGTTTCATGGGTTGACTTAG
127 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * **
15589536 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
15589600 AGCACACAGGGGGGACCGGGTTGATCTCCGGCTTGTGCATTCTACCTCTCCGATCAGTTGAGTGC
65 AGCACACAGGGGGGACCGGGTTGATC-CCGGCTTGCGCATTCTACCTCTCCGA-CGGCTGAGCGC
15589665 CCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
15589694 GCATACGGAGTTCACTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15589721 CATACGGAGT
Statistics
Matches: 282, Mismatches: 52, Indels: 20
0.80 0.15 0.06
Matches are distributed among these distances:
157 10 0.04
158 145 0.51
159 117 0.41
160 10 0.04
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACACAGGGGGGACCGGGTTGATCCCGGCTTGCGCATTCTACCTCTCCGACGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15597023 original size:26 final size:26
Alignment explanation
Indices: 15596987--15597039 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15596977 GTTGGCTTAG
15596987 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
15597013 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
15597039 G
1 G
15597040 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:15597839 original size:26 final size:26
Alignment explanation
Indices: 15597803--15597854 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15597793 TTGACTTAGC
15597803 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
* *
15597829 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
15597855 ATCTAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:15598022 original size:26 final size:26
Alignment explanation
Indices: 15597986--15598038 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15597976 GTTGGCTTAG
15597986 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15598012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15598038 G
1 G
15598039 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15598755 original size:26 final size:26
Alignment explanation
Indices: 15598718--15598770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598708 GTTGACTTAG
15598718 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15598744 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
15598770 G
1 G
15598771 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15599262 original size:158 final size:157
Alignment explanation
Indices: 15598842--15599277 Score: 421
Period size: 158 Copynumber: 2.7 Consensus size: 157
15598832 GGCTTGTGCG
* *
15598842 TTCTACCTCTCCGGACCGGCTGAGCGCCCGCATGC-CTGTTTCATGGGTTGGCTTAGGCATAGGG
1 TTCTACCTCTCC-GACC-GCTGAGCGCCCGCATGCTC-ATTTCATGGGTTGGCTTAGGCATACGG
* * * * * *
15598906 AGTTCATTCCATGTCAAAGCCCCAGTCGGACCGTGGGTTGTGGCAGCGGGACCGGTAGAACGTAG
63 AGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGATAGAACGTAG
* * *
15598971 AAGGGGATCGGGCTGATCCCCGGCTTACGCA
127 AAGGGGACCGGGCAGATCCCCGACTTACGCA
* * * * *** *
15599002 TTATGCCTCTCCGACCTGCTCAGCGCCCGAATGCTCATTTCATCTATTGACTTAGGCATACGGAG
1 TTCTACCTCTCCGACC-GCTGAGCGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
** * ** *
15599067 TTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGTGGCAACAGGATTGATAGCACGTAG-
65 TTCATT-CCATGTCTAAGCCCAG-CCGGACCGAGGGTTGTGGCAACAGGACCGATAGAACGTAGA
* * **
15599130 GGGGGACCGGGCCAG-TCCCTGACTTTTGCA
128 AGGGGACCGGG-CAGATCCCCGACTTACGCA
* * * *
15599160 TTCTACCTCTCCGATCGAATGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAG
1 TTCTACCTCTCCGACCG-CTGAGCGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
* * * *
15599225 TTCATTCCATGTCTAAGCCCAAGCCGGACTGAAGGTTGTGGTAGCAGGACCGA
65 TTCATTCCATGTCTAAGCCC-AGCCGGACCGAGGGTTGTGGCAACAGGACCGA
15599278 CAGCGGGATC
Statistics
Matches: 218, Mismatches: 51, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 111 0.51
159 89 0.41
160 14 0.06
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
TTCTACCTCTCCGACCGCTGAGCGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGATAGAACGTAGAAGG
GGACCGGGCAGATCCCCGACTTACGCA
Found at i:15599422 original size:26 final size:26
Alignment explanation
Indices: 15599386--15599437 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15599376 GTTGACTTAG
15599386 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15599412 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15599438 CATCAAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15599782 original size:26 final size:26
Alignment explanation
Indices: 15599753--15599805 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15599743 GTTGACTTAG
*
15599753 GCATACGAAGTTTATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
15599779 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15599805 G
1 G
15599806 ATCGGTCCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15600070 original size:159 final size:157
Alignment explanation
Indices: 15599887--15600280 Score: 409
Period size: 157 Copynumber: 2.5 Consensus size: 157
15599877 GCGTATTCTA
* * * * * *
15599887 CCTCTCTGGCCGGTTGAGCGCCCGCGCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCAGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
*** * *
15599952 TCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGTAGCGGGACTAG-TAGCACGCAGAGGGGG
66 TCCATGTCTAAGCCCCAACCGGACCAAGGGTTACAGTAGCAGGA-TAGATAGCAC-C-CAGGGGG
15600016 ACCGGGCCGATCCCC-GACTTGCACATTATG
128 ACCGGGCCGATCCCCAG-CTTGCACATTATG
* * * * * * *
15600046 CCTCTTCAG-TCGGTTCAGCACCCGCACGCTCGTTTCATGGTTTGACTTATGCATACAGAGTTCA
1 CCTC-TCAGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
** ** ** * *
15600110 TTCC-TAGTCTAAGATCGGATTGGACCGAGGGTTACAGTAGCAGGATCGATAGCACCCAGGGGGA
65 TTCCAT-GTCTAAGCCCCAACCGGACCAAGGGTTACAGTAGCAGGATAGATAGCACCCAGGGGGA
* * ** *
15600174 CCGGGTCGATCCTCAGCTTGTGCATTCTG
129 CCGGGCCGATCCCCAGCTTGCACATTATG
* *
15600203 CCTCTCCGACCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCAGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
15600268 TCCATGTCTAAGC
66 TCCATGTCTAAGC
15600281 ATACGGAGTT
Statistics
Matches: 189, Mismatches: 40, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.02
157 91 0.48
158 6 0.03
159 86 0.46
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (157 bp):
CCTCTCAGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAACCGGACCAAGGGTTACAGTAGCAGGATAGATAGCACCCAGGGGGACC
GGGCCGATCCCCAGCTTGCACATTATG
Found at i:15600283 original size:26 final size:26
Alignment explanation
Indices: 15600253--15600305 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15600243 GTTGGCTTAG
15600253 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15600279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15600305 G
1 G
15600306 GTCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15600542 original size:513 final size:513
Alignment explanation
Indices: 15599716--15600989 Score: 1549
Period size: 514 Copynumber: 2.5 Consensus size: 513
15599706 CTACGGCCGA
* * * * * * *
15599716 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATCCCCA-ATCTAAG
1 CTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* * * * **
15599780 CATACGGAGTTCATTCCCAGTCTAAGAT----C-GGTCCAAA--CTG-AG-GGTTGCGA-CA--A
65 CATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAAGGTTGCAGCAGCAG-GACCAGCA
* * * * * * *
15599833 -CAGGATCGGTAGCATGCAGGGGGGA-CTGGGCCGATCTCTGACTTGCGTATTCTACCTCTCTGG
129 GCAGGATCGGCAGCATGCAGGGGGGATC-GGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGA
* * * *
15599896 CCGGTTGAGCGCCCGCGCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * *
15599961 AAGCCCCAACCGGACCAAGGGTTGTGGTAGCGGGACTAGTAGCACGCAGAGGGGGACCGGGCCGA
258 AACCCCCAACCGGACCAAGGGTTGTGGCAGCGAGAATAGCAGCACGCAGAGGGGGACCGGGCCGA
* * * *
15600026 TCCCCGA-CTTGCACATTATGCCTCTTCAG-TCGGTTCAGCACCCGCACGCTCGTTTCATGGTTT
323 T-CCCGAGCTTGCACATTATGCCTC-TCAGATCAGCTCAGCACCCGCACGCTCATTTCATGGGTT
* * **
15600089 GACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCGGATTGGACCGAGGGTTACAGTAGCAGG
386 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGTAGCAGG
* * * * *
15600154 ATCGATAGCAC-CCAGGGGGACCGGGTCGATCCTCAGCTTGTGCATTCTGCCTCTCCGACCGG
451 ATCGATAGCACACAAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAG
* * *
15600216 TTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
15600281 ATACGGAGTTCATTCCCAGTCTAAGGTCAGACTGGACCAAAGGTTGCAGCCGCAGGACCAGCAGC
66 ATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAAGGTTGCAGCAGCAGGACCAGCAGC
* * * *
15600346 AGGATTGGCAGCATGCAGGGGAGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGCCC
131 AGGATCGGCAGCATGCAGGGG-GGATCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGACC
* *
15600411 GGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAA
195 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * *
15600476 CCCCCAACCGGACTGAGGGTTGTGGCAGCGAGAATGGCAGCACGCAGAGGGGGACCGGGTCGATC
260 CCCCCAACCGGACCAAGGGTTGTGGCAGCGAGAATAGCAGCACGCAGAGGGGGACCGGGCCGATC
* ** * * * *
15600541 CCTAGCTTGTGCATTATGCCTCTCCGATCAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACT
325 CCGAGCTTGCACATTATGCCTCTCAGATCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACT
* * * * *
15600606 TAGGCATACAGAGTTTATTCCCAGTCTAATATCGGACCGGACTGAGGGTTACAGTCGTAGGATCG
390 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGTAGCAGGATCG
* * * **
15600671 ATAGCACACAAAGGGGACTGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCAG
455 ATAGCACACAAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAG
* *
15600730 CTGAACGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * ** *
15600795 ATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTAAGGGTTGGGGCAGCAGGACCAGCAGT
66 ATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAAGGTTGCAGCAGCAGGACCAGCAGC
* * * *
15600860 AGGATCGGCAACAAGCAAGGGGGGATCAGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGATC
131 AGGATCGGCAGCATGC-AGGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGACC
* * * *
15600925 GACTGAGCGCCTGCACGTTCGTTTCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAA
195 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15600990 GCATACGGAG
Statistics
Matches: 658, Mismatches: 96, Indels: 26
0.84 0.12 0.03
Matches are distributed among these distances:
499 3 0.00
500 79 0.12
504 1 0.00
505 7 0.01
507 2 0.00
508 4 0.01
509 4 0.01
511 1 0.00
512 27 0.04
513 256 0.39
514 269 0.41
515 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (513 bp):
CTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAAGGTTGCAGCAGCAGGACCAGCAGC
AGGATCGGCAGCATGCAGGGGGGATCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGACCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAC
CCCCAACCGGACCAAGGGTTGTGGCAGCGAGAATAGCAGCACGCAGAGGGGGACCGGGCCGATCC
CGAGCTTGCACATTATGCCTCTCAGATCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGTAGCAGGATCGA
TAGCACACAAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAG
Found at i:15600633 original size:159 final size:158
Alignment explanation
Indices: 15600351--15600792 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
15600341 GCAGCAGGAT
* * * * ** *
15600351 TGGCAGCATGCAG-GGGAGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGCCCGGCT
1 TGGCAGCACGCAGAGGG-GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCT
* ** *
15600415 GAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAACCCC
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACACC
*
15600480 CAACCGGACTGAGGGTTGTGGCAG-CG-AGAA
130 CAACCGGACTGAGGG-T-T-ACAGTCGTAGAA
** * * *
15600510 TGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTAGCTTGTGCATTATGCCTCTCCGATCAGCTC
1 TGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTG
* * * * * * * *
15600575 AGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAATATCG
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACACCC
* *
15600640 GACCGGACTGAGGGTTACAGTCGTAGGA
131 AACCGGACTGAGGGTTACAGTCGTAGAA
** * * * * *
15600668 TCGATAGCACACA-AAGGGGACTGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCAGCT
1 T-GGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCT
* *
15600732 GAACGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAA
15600793 GCATACGGAG
Statistics
Matches: 232, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
156 3 0.01
157 6 0.03
158 97 0.42
159 123 0.53
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
TGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACACCC
AACCGGACTGAGGGTTACAGTCGTAGAA
Found at i:15600817 original size:26 final size:26
Alignment explanation
Indices: 15600767--15600819 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15600757 GTTGGCTTAG
*
15600767 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15600793 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15600819 G
1 G
15600820 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15601000 original size:26 final size:26
Alignment explanation
Indices: 15600964--15601015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15600954 GTTGGCTTTG
15600964 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15600990 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15601016 AATTTTGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15601736 original size:26 final size:26
Alignment explanation
Indices: 15601700--15601752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15601690 GTTGACTTAG
*
15601700 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15601726 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15601752 G
1 G
15601753 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15602027 original size:159 final size:159
Alignment explanation
Indices: 15601760--15602376 Score: 571
Period size: 158 Copynumber: 3.8 Consensus size: 159
15601750 AAGATCGAAC
* * * * * * *
15601760 CAGACCGAGGGTTGCGACAGCAGGATCAACAGCACGTA-AGGGGGATCGGGCTGATCCCTGACTT
1 CAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTT
* * * * * *
15601824 ACGCATTCTGCCTGTCCGACCGACTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATA
66 GCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
*
15601889 GGGAGTTCATTCCATGTCTAAGCCCCAGT
131 CGGAGTTCATTCCATGTCTAAGCCCCAGT
* *
15601918 CAGACCGAGGGTTGTGGCAGC-GAGACCGACAGCACGAAGAGGGGGACC-AGGCTGATCCCCGGC
1 CAGACCGAGGGTTGCGGCAGCAG-GACCGACAGCACGTAGAGGGGGACCGA-GCTGATCCCCGGC
* * *
15601981 TTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
64 TTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * * ** * *
15602046 TACAGAGTTCATTCCCA-ATATAAG-ATCGGA
129 TACGGAGTTCATT-CCATGTCTAAGCCCCAGT
* ** * * * **
15602076 CTGGATTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG-GGGGGATCGAACTGATCCCCATCT
1 C-AGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCT
* * * * * * *
15602140 TGCGCATTCTGCCTCTCCGATCGACTGAGCTCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCAT
65 TGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
15602205 ACGGAGTTCATTCCATGTCTAAGCCCCAGT
130 ACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
15602235 CGGACCGAGGGTTGTGGCAGCAGGATCAGTAGCAGGATCGACAGCATGCAGAAGGGGACCGAGCT
1 CAGACCGAGGGTTGCGGCAGCAGGA-CCG-A-CA-G--C-AC-G--T--AGAGGGGGACCGAGCT
* * ** * * * *
15602300 AATTCTTGGCTTGAGCATCATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
54 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
15602365 GACTTAGGCATA
119 GACTTAGGCATA
15602377 TGAAATTCAT
Statistics
Matches: 361, Mismatches: 76, Indels: 31
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 144 0.40
159 126 0.35
160 5 0.01
161 2 0.01
162 1 0.00
164 1 0.00
165 2 0.01
166 1 0.00
168 1 0.00
170 2 0.01
171 72 0.20
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
CAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTT
GCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:15602888 original size:26 final size:26
Alignment explanation
Indices: 15602858--15602908 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15602848 TTGGCTTAGG
* *
15602858 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACAGAGGTCATTCCCA-GTCTAAA
15602884 CATACAGAGGTCATTCCCAGTCTAA
1 CATACAGAGGTCATTCCCAGTCTAA
15602909 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACAGAGGTCATTCCCAGTCTAAA
Found at i:15603615 original size:26 final size:26
Alignment explanation
Indices: 15603579--15603630 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15603569 TTGACTTAGA
*
15603579 CATACGGAGTTTATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
15603605 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
15603631 ACTGAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:15605277 original size:906 final size:904
Alignment explanation
Indices: 15603541--15605277 Score: 2464
Period size: 906 Copynumber: 1.9 Consensus size: 904
15603531 CTCTGGTCGA
* * *
15603541 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGACATACGGAGTTTATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCATGAGTTGACTAAGACATACGGAGTTCATCCCCAGTCTAAGC
** * * *
15603606 ATATGGAGTTCATTCCCAGTCTAAGACTGAACCGGACAGAGGGTTACGATAGCAGGATCGACAGC
66 ATACAGAGTTCATTCCCAATCTAAGACTGAACCGGACAGAGGGCTACGATAGCAAGATCGACAGC
* * * *
15603671 ATGTAGGGGTGACCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGCGCCCC
131 ACGCAGGGGGGACCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTTCGACTGGCTGAGCGCCCC
* *** *
15603736 CAAATTTGTGGGCTGGCTTACGCAAAGGGAGTTCATTCCATGTCTAAGCATATGGAGTTTATTCC
196 CAAATTTATGGGCTGGCTTACGCAAAGGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCC
* * * * * * * *
15603801 CAGTCTAAGATCAGATCAGACCTAGGGTTGTTGCAGCAGGATCGACGGTGGGATCGGTAGCACGC
261 CAGTCTAAGATCAGACCAAACCTAGGGTTGTGGCAGCAAGATCGACAGCGAGATCGATAGCACGC
* * * ** * *
15603866 AGGGGGGATCGGGTCGATCTTCGGCTTGTGCATTCTGTCTCTCCAGCCGGCTAAGCGCCCACCTG
326 A-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCCGCTAAGCGCCCACCTG
* * * *
15603931 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAG
390 CCCATTTCGTGGGTCGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCGAACCAAG
* * * *
15603996 GGTTGGGGCACCATCGCCGGAGCATCATCGGAGAGCCTAACCGACGGCATTGGGGGTTCCGGCGA
455 GGTTGGGGCACCATCACCAGAGCATCATCGGAGAGCCTAACCGACGGCATTAGGGGTTCCGACGA
**
15604061 TTGGCAGGCCAGGGGGTGTGCACACATGATGTGTGATGGGTGCTGCTACTTGGCCCTTATATTCG
520 TTGGCAGGCCAGGGGGTGTGCACACATGATGTACGATGGGTGCTGCTACTTGGCCCTTATATTCG
15604126 CCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTGATAGG
585 CCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTGATAGG
*
15604191 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTGACAAAATCT
650 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCT
*
15604256 TCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACACGCCCGTTTCGTGGGCTACC
715 TCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTCGTGGGCTACC
*
15604321 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAACCGAGGGTTGTGACAGCGGGATCT
780 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAACCAAGGGTTGTGACAGCGGGATCT
15604386 GCAGTACGCAGTGGGTGATCAGGCCGATTCTTGGCTTGCGCATTTTGCCTCTCCGACTGG
845 GCAGTACGCAGTGGGTGATCAGGCCGATTCTTGGCTTGCGCATTTTGCCTCTCCGACTGG
* * ** *
15604446 CTGAGCGCCCGTACGCTCATTTCGTGAGTTGACTAAGGTATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCATGAGTTGACTAAGACATACGGAGTTCATCCCCAGTCTAAGC
* * * * * *
15604511 ATACAGAGTTCATTCCTAATCTAAGATTGGACCGGACCGAGGGCTGCGGTAGCAAGATCGACAGC
66 ATACAGAGTTCATTCCCAATCTAAGACTGAACCGGACAGAGGGCTACGATAGCAAGATCGACAGC
* * * * *
15604576 ACGCAGGGGGGATCGGG-TCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGTGCCC
131 ACGCAGGGGGGACCGGGCT-AATCCCCGGCTTGCGCATTATGCCTCTTCGACTGGCTGAGCG-CC
*** * * *
15604640 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAGTT
194 -C-C-CAAATTT-ATGGGCTGGCTTACGCAAAGGGAGTTCATTCCATGTCTAAGCATACAAAGTT
* * *
15604705 CATTCCCAGTCTAAGATCAGACCAAACC-GGGGTTGTGGTAGCAAGA-CTGATAGCGAGATCGAT
255 CATTCCCAGTCTAAGATCAGACCAAACCTAGGGTTGTGGCAGCAAGATC-GACAGCGAGATCGAT
* * *
15604768 AGCACGCA-GGGGACCGAGCCGATCCCCGGCTTGTGGATTCTGCCTCTCCGGCCCGCT-AGTGCC
319 AGCACGCAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCCGCTAAGCGCC
* ** *
15604831 CACAC-GCCCGTTTCGTGGGTCGGCTTAGGCATAGGGAATTTGTTCCTTGTCTAAGCCCCAGCCG
384 CAC-CTGCCCATTTCGTGGGTCGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCG
* * *
15604895 AATCGAA-GGTTGGGGCACCATCACCAGAGCATCGTCGGAGAGCCTAATCGACGGCATTAGGGGT
448 AA-CCAAGGGTTGGGGCACCATCACCAGAGCATCATCGGAGAGCCTAACCGACGGCATTAGGGGT
* * * * *
15604959 TTCGATGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCT
512 TCCGACGATTGGCAGGCCAGGGGGTGTGCACACATGATGTACGATGGGTGCTGCTACTTGGCCCT
* * *
15605024 TATATTGGCCCCCTATTACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGAT
577 TATATTCGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
15605089 TTTATAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAACGGTCA
642 TTGATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCA
15605153 CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTCGT
707 CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTCGT
* ** **
15605218 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTG
772 GGGCTACCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAACCAAGGGTTG
15605278 GGGCACCATC
Statistics
Matches: 727, Mismatches: 95, Indels: 19
0.86 0.11 0.02
Matches are distributed among these distances:
904 1 0.00
905 281 0.39
906 292 0.40
907 45 0.06
908 2 0.00
909 36 0.05
910 70 0.10
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (904 bp):
CTGAGCGCCCGCACGCTCATTTCATGAGTTGACTAAGACATACGGAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCCAATCTAAGACTGAACCGGACAGAGGGCTACGATAGCAAGATCGACAGC
ACGCAGGGGGGACCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTTCGACTGGCTGAGCGCCCC
CAAATTTATGGGCTGGCTTACGCAAAGGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCC
CAGTCTAAGATCAGACCAAACCTAGGGTTGTGGCAGCAAGATCGACAGCGAGATCGATAGCACGC
AGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCCGCTAAGCGCCCACCTGC
CCATTTCGTGGGTCGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGCCGAACCAAGG
GTTGGGGCACCATCACCAGAGCATCATCGGAGAGCCTAACCGACGGCATTAGGGGTTCCGACGAT
TGGCAGGCCAGGGGGTGTGCACACATGATGTACGATGGGTGCTGCTACTTGGCCCTTATATTCGC
CCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTGATAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTT
CTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTCGTGGGCTACCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAACCAAGGGTTGTGACAGCGGGATCTG
CAGTACGCAGTGGGTGATCAGGCCGATTCTTGGCTTGCGCATTTTGCCTCTCCGACTGG
Found at i:15605922 original size:184 final size:185
Alignment explanation
Indices: 15605669--15606029 Score: 442
Period size: 184 Copynumber: 2.0 Consensus size: 185
15605659 GATCTGCAGT
*
15605669 ACGCAGTGGGTGATCAGGCCGATTCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGACC
1 ACGCAGTGGGGGATCAGGCCGATTCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGACC
* * * * *
15605734 GCACGCTCATTTCGTGAGTTGACTAAGGTATATGGAGTTCATCCCCA-GTCTAAGCATACAGAGT
66 GCACGCCCATTTCATGAGTTGACTAAGGCATAGGGAGTTCAT-CCCATGTCTAAGCATACAAAGT
* ** **
15605798 TCATTCCTAATCTAAGATTGGACCGGACCGAGGGCTGCGGTAGCAAGATCGACAGC
130 TCATTCCCAATCTAAGATCAGACCAAACCGAGGGCTGCGGTAGCAAGATCGACAGC
* * * * * *
15605854 ACGCAG-GGGGGATCGGGTCGA-TCCTCGGCTTGCGCATTCTGCCTCTTCGA-CTGGCTGAGTGC
1 ACGCAGTGGGGGATCAGGCCGATTCCT-GGCTTGCGCATTATGCCTCTCCGATC-GGCTGAGCGA
* * * * *
15605916 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAG
64 CCGCACGCCCATTTCATGAGTTGACTAAGGCATAGGGAGTTCATCCCATGTCTAAGCATACAAAG
* * *
15605981 TTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGTAGCAAGA
129 TTCATTCCCAATCTAAGATCAGACCAAACCGAGGGCTGCGGTAGCAAGA
15606030 CTGATAGCGA
Statistics
Matches: 148, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
183 8 0.05
184 134 0.91
185 6 0.04
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (185 bp):
ACGCAGTGGGGGATCAGGCCGATTCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGACC
GCACGCCCATTTCATGAGTTGACTAAGGCATAGGGAGTTCATCCCATGTCTAAGCATACAAAGTT
CATTCCCAATCTAAGATCAGACCAAACCGAGGGCTGCGGTAGCAAGATCGACAGC
Found at i:15606825 original size:184 final size:184
Alignment explanation
Indices: 15606598--15606933 Score: 428
Period size: 184 Copynumber: 1.8 Consensus size: 184
15606588 ATCAGGTTAC
* * *
15606598 TCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCACG-CTCGTTTCGTGAGTTG
1 TCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCACGCCT-ATTTCATGAGTTG
*
15606662 AC-TAAGCTATACGAAGTTCATCCCCA-GTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATC-
65 ACTTAAGC-ATACGAAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
15606724 GAACCGGACCGAGGGTTGTGGCAGCAAGATCGGCAGCAAGTAAGGGGGATCGGGCCGA
128 G-ACCAGACCGAGGGTTGTGACAGCAAGATCGGCAGCAAGTAAGGGGGATCGGGCCGA
* * * ** * * * *
15606782 TCCCCGGCTTACGCATTCTGCCTCTTCGGCTGGTTGAGCGCCCGTACGCCTATTTCATGGGTTGG
1 TCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCACGCCTATTTCATGAGTTGA
** * * *
15606847 CTTCGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
66 CTTAAGCATACGAAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
15606912 CAGACCGAGGGTTGTGACAGCA
131 CAGACCGAGGGTTGTGACAGCA
15606934 GAACCGACAG
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
183 3 0.02
184 119 0.93
185 6 0.05
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
TCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTGAGCGCCCGCACGCCTATTTCATGAGTTGA
CTTAAGCATACGAAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGTGACAGCAAGATCGGCAGCAAGTAAGGGGGATCGGGCCGA
Found at i:15606882 original size:26 final size:26
Alignment explanation
Indices: 15606852--15606904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15606842 GTTGGCTTCG
*
15606852 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15606878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15606904 G
1 G
15606905 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15606959 original size:907 final size:905
Alignment explanation
Indices: 15605198--15607607 Score: 3361
Period size: 907 Copynumber: 2.6 Consensus size: 905
15605188 TTTTTATGCA
*
15605198 CGCCAACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
15605263 TCGGACCAAGGGTTGGGGCACCATCGCCGGAGCATCATCGGAGAGCCTAACCGACGGCATTGGGG
66 TCGGACGAA-GGTTGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGACGGCATT-GGG
* * * * * *
15605328 GTTCCGGCGATTGGCAGGCCAGGGGGTGTGCACACATGATGTGTGATGGGTGCTGCTACTTGGCC
129 GTTTCGACGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
15605393 CTTATATTCGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
194 CTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15605458 ATTTGATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
259 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
* *
15605523 GACAAAATCTTCTCCACTTTGAGTTTTTAGTTGAATTTTTTTATGCACGCCAACACGCCCGTTTC
324 CACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTC
* ** * **
15605588 GTGGGCTACCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGA
389 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGA
* * * * *
15605653 CAGCGGGATCTG-CAGTACGCAGTGGGTGATCAGGCCGATTCCTGGCTTGCGCATTATGCCTCTC
454 CAGCGGGATC-GACAGCACGCAGTGGGGGATCAGG-TGATACCCGGCTTGCGCATTATGCCTCTC
* * * * *
15605717 CGATCGGCTGAGCGACCGCACGCTCATTTCGTGAGTTGACTAAGGTATATGGAGTTCATCCCCAG
517 CGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTAAGCTATACGGAGTTCATCCCCAG
* * * *
15605782 TCTAAGCATACAGAGTTCATTCCTAATCTAAGATTGGACCGGACCGAGGGCTGCGGTAGCAAGAT
582 TCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGCTGCGGCAGCAAGAT
* * * * *
15605847 CGACAGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGA
647 CGACAGCAAGCAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACTGGCTGA
* *
15605912 GTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATAC
712 GCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATAC
** * *
15605977 AAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGTAGCAAGACTGATAGCGAGA
777 AAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGACAGCAAGACCGACAGCGAGA
*
15606042 TCGATAGCACGCA-GGGGACCGAGCCGATCCCCGGCTTGTGGATTCTGCCTCTCCGGCCCGCT-A
842 TCGATAGCACGCAGGGGGA-CGAGCCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCCGCTGA
15606105 G
905 G
* * * ** *
15606106 TGCCCACACGCCCGTTTCGTGGGTCGGCTTAGGCATAGGGAATTTGTTCCTTGTCTAAGCCCCAG
1 CGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
15606171 CCGAATCGAAGGTTGGGGCACCATCACCAGAGCATCGTCGGAGAGCCTAATCGACGGCATTAGGG
66 TCGGA-CGAAGGTTGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGACGGCATT-GGG
* *
15606236 GTTTCGATGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCC
129 GTTTCGACGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
15606301 CTTATATTGGCCCCCTATTACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAG
194 CTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15606366 ATTTTATAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAACGGT
259 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
*
15606430 CACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTT
324 CACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTC
* *
15606495 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAGCCCTAGTCGGACCGAGGGTTGTGA
389 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGA
* * * *
15606560 CAGCGGGATCGACAGCATGCGGTGGGGGATCAGGTTACTCCCCGGCTTGCGCATTATGCCTCTCC
454 CAGCGGGATCGACAGCACGCAGTGGGGGATCAGGTGA-TACCCGGCTTGCGCATTATGCCTCTCC
* *
15606625 GACCAGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTAAGCTATACGAAGTTCATCCCCAGT
518 GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTAAGCTATACGGAGTTCATCCCCAGT
* * * * *
15606690 CTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAAGATC
583 CTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGCTGCGGCAGCAAGATC
* * * *
15606755 GGCAGCAAGTAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCTGGTTGAG
648 GACAGCAAGCAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAG
* * * *
15606820 CGCCCGTACGCCTATTTCATGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCATACG
713 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACA
* * *
15606885 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGC-AGAACCGACAGCGGGA
778 AAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGACAGCAAG-ACCGACAGCGAGA
* * * *
15606949 TCGGTAGCACGCAGGGGGACGAGCCGATCCCCGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAG
842 TCGATAGCACGCAGGGGGACGAGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCCGCTGAG
* * *
15607013 CGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAA
1 CGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
15607078 TCGGACCGAGGGTTGGGGCACCATCGCTGGAGCATCGCCGGAGTATCGTCAGAGAGCCTAATCGA
66 TCGGA-CGAAGGTTGGGGCACCA----T----CA---CCGGAGCATCGTCGGAGAGCCTAATCGA
* * * * *
15607143 CGGTATTGGGGGTTCGACGATAGGTGGGCCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTG
119 CGGCATTGGGGTTTCGACGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
15607208 GTACTTGGCCCTTATATTGG-CCCGTATCACTCATC-AACCTCGAGAACTCACA-CCCCTTAAAG
184 GTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* *
15607270 AGCATTTGAG-TTTTATA-GTTTGCTGCCAAGTAGCCATTAAACTGTCTAAAATGGGGACACTTT
249 AGCATTTGAGATTTTATAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * ** * *
15607333 TTTCAAACGATCACAAAATCTTTTCCCCTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
313 TTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAAC
15607398 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACC
378 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACC
* ** **
15607463 GAGGGTTGTGAGAGCAAGATC-AGCAGCACGCAGT-GGGGATTGGGTCGATACCCGGCTTGCGCA
443 GAGGGTTGTGACAGCGGGATCGA-CAGCACGCAGTGGGGGATCAGGT-GATACCCGGCTTGCGCA
* * * * * * * *
15607526 TTATGCCTCTCCGGCCGGCTCAACACCCGCACACTCGTTTCATGGGTTGACTTAGGC-ATACGGA
506 TTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGAC-TAAGCTATACGGA
*
15607590 GTTCATTCCCAGTCTAAG
570 GTTCATCCCCAGTCTAAG
15607608 ATCGGATCAG
Statistics
Matches: 1330, Mismatches: 150, Indels: 39
0.88 0.10 0.03
Matches are distributed among these distances:
906 29 0.02
907 570 0.43
908 284 0.21
909 3 0.00
911 1 0.00
912 10 0.01
913 126 0.09
914 173 0.13
915 18 0.01
916 13 0.01
917 72 0.05
918 31 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (905 bp):
CGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
TCGGACGAAGGTTGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGACGGCATTGGGGT
TTCGACGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCA
CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACACGCCCGTTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGACA
GCGGGATCGACAGCACGCAGTGGGGGATCAGGTGATACCCGGCTTGCGCATTATGCCTCTCCGAC
CGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTAAGCTATACGGAGTTCATCCCCAGTCTA
AGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGCTGCGGCAGCAAGATCGAC
AGCAAGCAAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACTGGCTGAGCGC
CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAG
TTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGACAGCAAGACCGACAGCGAGATCGA
TAGCACGCAGGGGGACGAGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCCGCTGAG
Found at i:15607768 original size:26 final size:26
Alignment explanation
Indices: 15607739--15607791 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15607729 GTTGGCTTAG
*
15607739 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15607765 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15607791 G
1 G
15607792 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15608468 original size:26 final size:26
Alignment explanation
Indices: 15608439--15608491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15608429 GTTGACTTAG
*
15608439 GCATACGGAGTTTATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15608465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15608491 G
1 G
15608492 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15611171 original size:159 final size:157
Alignment explanation
Indices: 15610716--15611174 Score: 490
Period size: 159 Copynumber: 2.9 Consensus size: 157
15610706 TTGTCGATCT
* * *
15610716 TGCTGTCGGTCTTGCTGCCCCAACCCTCAATCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
** * * *
15610781 TGCCTAAGCCAACCCACGAAACGAGCATGCGGGCATTCAGCCGGTCGGAGAGGCAGAATGCGTAA
66 TGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
* * * * * *
15610846 GTCGTGGACCAACTCGATCCCCTTTGCG
131 GCCG-GGATCGACCCGATCCCCTCTGCA
* *** * * * *
15610874 TGCTGTCGATCCTGCTGCTGTAACCCTCAGTCTGGTTCGATCTTAGAC-TGGGAATGAACTCCGT
1 TGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGTCTTAGACAT-GGAATGAACTCCGT
* * * * * * * *
15610938 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAGTCAGCTGGAGAGGCATAATGCGCA
65 ATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCA
*
15611003 AGCCGGGGATCGGCCCGATCACCCTCTGCA
130 AGCC-GGGATCGACCCGATC-CCCTCTGCA
* * * *
15611033 TGCTGTCGGTCGTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
* * * * *
15611098 TGCCTAAGCCAACCCACAAAACG-GATATGCGGGCGGTCAGCCAGCCGAAGAGGCAGGATGCGCA
66 TGCCTAAGCCAACCCACGAAACGAG-CATGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCA
15611162 AGCCAGGGATCGA
130 AGCC-GGGATCGA
15611175 ACGGGTGGTA
Statistics
Matches: 239, Mismatches: 57, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 118 0.49
159 119 0.50
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
TGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGTCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAA
GCCGGGATCGACCCGATCCCCTCTGCA
Found at i:15611808 original size:26 final size:26
Alignment explanation
Indices: 15611770--15611822 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15611760 GGCTCAAACT
15611770 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
15611796 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
15611822 C
1 C
15611823 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15613263 original size:159 final size:159
Alignment explanation
Indices: 15612994--15613496 Score: 441
Period size: 159 Copynumber: 3.2 Consensus size: 159
15612984 CCGGCAGGGG
* * **
15612994 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
15613058 CTGGCCAGAGAGGCAGAATGCCTAAG-CGAGGGACCGGCCTGGTCCCCTCCTACGTGCTGTCGAT
65 CTGACCGGAGAGGCAGAATGCCCAAGCCGA-GGATCGGCCCGGTCCCCTCCTACGTGCTGTCGAT
15613122 CCTGCTGCTGTAACCCTCGGTCCGATCCGAT
129 CCTGCTGCTGTAACCCTCGGTCCGATCCGAT
* * * * *
15613153 CTTACACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCACTGAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
15613217 CCGACCGGAGAGGCATAATGCCCAAGCCGAGGATCGACCCGATCCCCCTCTGTA--TGTTGTCGG
65 CTGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGT-CCCCTC-CTACGTGCTGTCGA
*** * * **
15613280 T-CTCGCTGCCACAACCCTCAGTCCGA-CTGGGG
128 TCCT-GCTGCTGTAACCCTCGGTCCGATC-CGAT
* * * ** *
15613312 CTTAGACAT-GGAATGACCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
15613376 CTAACCGGAAAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCT-CTGCGTGCTGTCGATC
65 CTGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGTCCCCTCCTACGTGCTGTCGATC
** * * *
15613440 CTATTG-TCGTAACCCTTGGTTCGATCCAAT
130 CTGCTGCT-GTAACCCTCGGTCCGATCCGAT
15613470 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
15613497 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 68, Indels: 31
0.73 0.19 0.09
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 54 0.21
159 192 0.74
160 11 0.04
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
TGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGGTCCCCTCCTACGTGCTGTCGATCC
TGCTGCTGTAACCCTCGGTCCGATCCGAT
Found at i:15613499 original size:26 final size:26
Alignment explanation
Indices: 15613470--15613522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15613460 TCGATCCAAT
*
15613470 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15613496 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15613522 C
1 C
15613523 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15614442 original size:26 final size:26
Alignment explanation
Indices: 15614413--15614465 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15614403 CCGGTCTGAT
15614413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15614439 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15614465 C
1 C
15614466 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15614797 original size:26 final size:26
Alignment explanation
Indices: 15614768--15614820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15614758 CCGATCCGAT
*
15614768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
15614794 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15614820 C
1 C
15614821 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:15615179 original size:26 final size:26
Alignment explanation
Indices: 15615141--15615193 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15615131 TCGGTCTGAT
15615141 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15615167 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15615193 C
1 C
15615194 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15616423 original size:159 final size:158
Alignment explanation
Indices: 15616063--15616525 Score: 477
Period size: 159 Copynumber: 2.9 Consensus size: 158
15616053 AACTTCGTAT
*
15616063 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
15616128 CCAATCGGAAAGGCAGAATGCGTAAGCTGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCC
66 CCGATCGGAGAGGCAGAATGCGGAAGCTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCC
*
15616193 TGCTGCCGCAACCCTCGATCCGATCCCA
131 TGCTGCCACAACCCTCGATCCGATCCCA
* * * * * * * *
15616221 TCTTAGACTAT-GAATTAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGAGCGTTGA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
15616285 GCCGGTCGGAGAGGCATAATGCGGAAG-TCGGGGATTAGCCCGATCCCCCTCTGTGTGCTGCCCG
65 GCCGATCGGAGAGGCAGAATGCGGAAGCT-GAGGATCAGCCCGATCCCCC-CTGCGTGCTG-CCG
* * ****
15616349 -T-CTCGCTGCCACAACCCTC-AGTCTGGTTGGG
127 ATCCT-GCTGCCACAACCCTCGA-TCCGATCCCA
* * *
15616380 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
15616445 CCGATCGGAGAGGCAGAATGCAAAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTTCTACCGATCC
66 CCGATCGGAGAGGCAGAATGCGGAAGCTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCC
**
15616510 TGCTGCCGTAACCCTC
131 TGCTGCCACAACCCTC
15616526 AGTCTAGTTC
Statistics
Matches: 244, Mismatches: 51, Indels: 20
0.77 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 116 0.48
159 122 0.50
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGGAAGCTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGATCCGATCCCA
Found at i:15616915 original size:26 final size:26
Alignment explanation
Indices: 15616886--15616938 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15616876 CCGATCTTAT
15616886 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15616912 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15616938 C
1 C
15616939 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15616941 original size:176 final size:176
Alignment explanation
Indices: 15616735--15617329 Score: 696
Period size: 176 Copynumber: 3.3 Consensus size: 176
15616725 TTCGGCTGGG
* * *
15616735 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAATGAGCGTGTGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAA
15616800 CCAGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACAC-AATCCTGTTGCTGGTCCTACGGTT
66 CCAGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGAC-CTAATCCTGTTGCTGGTCCTACGGTT
**
15616864 GGAACACTCCGTCCGATCTTATCTTAGACTAGGAATGAACTCCGTAT
130 GGAACACTCCGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
*
15616911 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAA
* * * *
15616976 CCAGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCTGATCCTGTTGCTGGTCCTACGGTTG
66 CCAGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTAATCCTGTTGCTGGTCCTACGGTTG
* *
15617041 GAACACTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 GAACACTCCGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* *
15617087 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA-AAATGAGTGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAATGAGCGTGCGGGCGCTCA
** * * * ***
15617151 GTC-GACCGGAGAGCCAGAATGCGTAAGTCGAGGAACAGTTCGGTCC-CCCCCTGTATGCTGTCG
65 ACCAG-CCGGAGAGGCAGAATGCGTAAGTCG-GG----GATC-GACCTAATCCTGT-TGCTG--G
* *** * * * * * * **
15617214 ATCCTGCTACTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATAT
120 -TCCTACGGTTGGAACACTCCGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
* * *
15617272 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGG
15617330 TGCTGAGCCG
Statistics
Matches: 363, Mismatches: 41, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
175 2 0.01
176 243 0.67
177 3 0.01
181 8 0.02
182 8 0.02
184 2 0.01
185 97 0.27
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.21
Consensus pattern (176 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAA
CCAGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTAATCCTGTTGCTGGTCCTACGGTTG
GAACACTCCGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:15617091 original size:26 final size:26
Alignment explanation
Indices: 15617062--15617114 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15617052 CCGGTCCGAT
15617062 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15617088 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15617114 C
1 C
15617115 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15617298 original size:26 final size:26
Alignment explanation
Indices: 15617247--15617299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15617237 CCGGTCTGAT
*
15617247 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15617273 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15617299 C
1 C
15617300 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15617397 original size:185 final size:185
Alignment explanation
Indices: 15617050--15617398 Score: 452
Period size: 185 Copynumber: 1.9 Consensus size: 185
15617040 GGAACACTCC
*
15617050 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGC
1 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGC
* * **
15617115 CTAAGCCAACCCACAAAATGAGTGTACGGGCGCTCAGTCGACCGGAGAGCCAGAATGCGTAAGTC
66 CTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGCCAGAATGCCCAAGTC
*
15617180 GAGGAACAGTTCGGTCCCCCCCTGTATGCTGTCGATCCTGCTACTGTAACCCTCG
131 GAGGAACAGTTCGATCCCCCCCTGTATGCTGTCGATCCTGCTACTGTAACCCTCG
* * *
15617235 GTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGAC-TGGGGATGAACTCCGTATG
1 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATG
* * * * * * *
15617299 CCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCGGCC-GA-AGCTGCATAATGCCCAA
65 CCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGC--CAGAATGCCCAA
* * * * * *
15617362 GTTGGGGATCGGTTCGATCCCCCTCTGTGTGCTGTCG
128 GTCGAGGAACAGTTCGATCCCCCCCTGTATGCTGTCG
15617399 GTCCCATTGC
Statistics
Matches: 139, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
183 3 0.02
184 3 0.02
185 133 0.96
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGC
CTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGCCAGAATGCCCAAGTC
GAGGAACAGTTCGATCCCCCCCTGTATGCTGTCGATCCTGCTACTGTAACCCTCG
Found at i:15617438 original size:185 final size:185
Alignment explanation
Indices: 15617062--15617458 Score: 426
Period size: 185 Copynumber: 2.1 Consensus size: 185
15617052 CCGGTCCGAT
*
15617062 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * **
15617127 ACAAAATGAGTGTACGGGCGCTCAGTCGACCGGAGAGCCAGAATGCGTAAGTCGAGGAACAGTTC
66 ACAAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGCCAGAATGCCCAAGTCGAGGAACAGTTC
* ** ** * *
15617192 GGTCCCCCCCTGTATGCTGTCGATCCTGCTACTGTAACCCTCGGTCCGGTCTGAT
131 GATCCCCCCCTGTATGCTGTCGATCCCACTACCATAACCCTCGGTCCAGTCTGAG
* * *
15617247 CTTAGACTGGGAATGAACTCTATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * * * *
15617311 CACGAAATGAGCGTGCGGGTGCTGAGCCGGCC-GA-AGCTGCATAATGCCCAAGTTGGGGATCGG
65 CACAAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGC--CAGAATGCCCAAGTCGAGGAACAG
* * * * * *
15617374 TTCGATCCCCCTCTGTGTGCTGTCGGTCCCATTGCCATAACCCTCGGTCCAG-CTGGGG
128 TTCGATCCCCCCCTGTATGCTGTCGATCCCACTACCATAACCCTCGGTCCAGTCT-GAG
*
15617432 CTTAGACAT-GGAATGAACTCCCTATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
15617459 CTAAGCCAAC
Statistics
Matches: 174, Mismatches: 33, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
183 3 0.02
184 5 0.03
185 165 0.95
186 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACAAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGCCAGAATGCCCAAGTCGAGGAACAGTTC
GATCCCCCCCTGTATGCTGTCGATCCCACTACCATAACCCTCGGTCCAGTCTGAG
Found at i:15617587 original size:36 final size:36
Alignment explanation
Indices: 15617536--15617607 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
15617526 GGATCGGCTC
* *
15617536 GATCCCCCCTGCGTGCTGCCGATCTTGTTGCCACAA
1 GATCCCCCCTACGTGCTGCCGATCTTGCTGCCACAA
15617572 GATCCCCCCTACGTGCTGCCGATCTTGCTGCCACAA
1 GATCCCCCCTACGTGCTGCCGATCTTGCTGCCACAA
15617608 CCCTTGGTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.15, C:0.40, G:0.21, T:0.24
Consensus pattern (36 bp):
GATCCCCCCTACGTGCTGCCGATCTTGCTGCCACAA
Found at i:15617662 original size:26 final size:26
Alignment explanation
Indices: 15617626--15617678 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15617616 TCGATTTGAT
15617626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15617652 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15617678 C
1 C
15617679 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15617852 original size:26 final size:26
Alignment explanation
Indices: 15617823--15617875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15617813 CTGGTCCGAT
*
15617823 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCATATG
15617849 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
15617875 C
1 C
15617876 CTAAGCCCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15618339 original size:158 final size:156
Alignment explanation
Indices: 15617849--15618346 Score: 468
Period size: 158 Copynumber: 3.2 Consensus size: 156
15617839 ACTCCGTATG
** * *
15617849 CTTAGACATGGAATGAACTCCATATGCCTAAGCCCTCCCACGAAACGAGCATGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAG-CCAACCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
15617914 TGGTCGAAGAGGCAGAATGTGCAAGCCGGGATCAGCCCGGTCCCCCCCTGCATGCTATCGATCCT
65 TGACCGAAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGAT-CCCCCCTGCATGCTGTCGATCCT
* ** * * * *
15617979 ACTGCTATAACCCTCGGTCTGGTCCAAT
129 GCTGCCGTAACCCTCAGTCCGGTTCGAT
* * * ** * * * *
15618007 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATC-AATGTTCGAGCGTTGA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA-CCACGAAA-CGAGCGTGCGGGCGCTCA
* * *
15618070 GCTGACCAAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-AGT-CCCTCTGCATGCTGTCGAT
63 GCTGACCGAAGAGGCAGAATGCGCAAG-CGGGGATCAGCCCGA-TCCCCCCTGCATGCTGTCGAT
* * ** * **
15618133 CTTGCTGCCGCAACCCTCAGTCCGACTGGGG
126 CCTGCTGCCGTAACCCTCAGTCCGGTTCGAT
* * *
15618164 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCATTGAAACGGGCGTGCGGGCGCTCAG-
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCA-CGAAACGAGCGTGCGGGCGCTCAGC
* *
15618228 TCGACCGGAGAGGCAGAATGCGCAAGACGGGGATCAGTCCGATCCCCCCTGCATGCTGTCGATCC
65 T-GACCGAAGAGGCAGAATGCGCAAG-CGGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCC
*
15618293 TGCTGCCGTAACCTTCAGTCCGGTTCGAT
128 TGCTGCCGTAACCCTCAGTCCGGTTCGAT
*
15618322 CTTAGAC-TGGGAATGAACTCTATAT
1 CTTAGACAT-GGAATGAACTCCATAT
15618347 ACTTAGACTG
Statistics
Matches: 265, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 5 0.02
157 116 0.44
158 131 0.49
159 13 0.05
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCACGAAACGAGCGTGCGGGCGCTCAGCT
GACCGAAGAGGCAGAATGCGCAAGCGGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCTGC
TGCCGTAACCCTCAGTCCGGTTCGAT
Found at i:15619026 original size:159 final size:159
Alignment explanation
Indices: 15618715--15619018 Score: 382
Period size: 159 Copynumber: 1.9 Consensus size: 159
15618705 ACTCCGTATG
* *
15618715 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTACGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAACGTACGGGCGCTCAGT
* * * *
15618780 CGACCAGAGAGGCAAAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCCATGGGTGCTATCGATCT
66 CGACCAGAGAGGCAAAATGCGCAAGCAGAGGATCGGCCCGGTCCCCCCATGCGTACTACCGATCT
*
15618845 TGCTACCACAACCCTAGATCTGGTTCGAT
131 CGCTACCACAACCCTAGATCTGGTTCGAT
* * * * *
15618874 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAG-
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAACGTACGGGCGCTCAGT
* * * *
15618938 CTGACC-GAAGAGGCATAATGCGCAAGCCAG-GGATCGGCCTGGTCCCTCTC-TGCGTACTGCCG
66 C-GACCAG-AGAGGCAAAATGCGCAAG-CAGAGGATCGGCCCGGTCCC-CCCATGCGTACTACCG
* *
15619000 GTCTCGCTACCACAGCCCT
127 ATCTCGCTACCACAACCCT
15619019 CGGTCTGGCT
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
158 2 0.02
159 117 0.95
160 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAACGTACGGGCGCTCAGT
CGACCAGAGAGGCAAAATGCGCAAGCAGAGGATCGGCCCGGTCCCCCCATGCGTACTACCGATCT
CGCTACCACAACCCTAGATCTGGTTCGAT
Found at i:15620655 original size:27 final size:26
Alignment explanation
Indices: 15620604--15620657 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
15620594 GGCTCAAACT
*
15620604 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
15620630 CTTAGACATGGAAATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
15620657 C
1 C
15620658 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15621135 original size:26 final size:26
Alignment explanation
Indices: 15621106--15621158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15621096 CTGGTCCGAT
15621106 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
15621132 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15621158 C
1 C
15621159 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Done.