Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 126 of 402
Found at i:15621435 original size:171 final size:170
Alignment explanation
Indices: 15621131--15621535 Score: 435
Period size: 171 Copynumber: 2.4 Consensus size: 170
15621121 AACTCCGTAT
* *
15621131 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGATAT--GGGCGCTCA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-TGTGCGGGCGCTCA
* * * * *
15621194 GCTGACCGGAGAGGCGTAGTGCACAAGCCAGGGATCAGCCTGGTCCCCCTCTACGTGTTGCTGAT
64 ACCGACCGGAGAGGCGTAGTGCACAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGTTGCCGAT
* * *
15621259 CCTGCTGTCGATCCTGCTGCCACAATCCTCGGTCCAACTGGG
129 CCTGCTATCGATCCTGCTGCCACAACCCTCGGTCCAACTGGA
* *
15621301 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAA
* * *
15621366 CCGGCTGGAGA-G-GTAGAATGCACAAGCCAGGGATC-GACCCGATCCCACC-CTGCGTGTTGCC
65 CCGACCGGAGAGGCGTAG--TGCACAAGCCAGGGATCAG-CCCGATCCC-CCTCTACGTGTTGCC
* * * * * * * *
15621427 GTTCCTGCTATCGGTCCTGCTGTCGCAACCCTTGGTCCGATTTGA
126 GATCCTGCTATCGATCCTGCTGCCACAACCCTCGGTCCAACTGGA
* * * * * *
15621472 TCTTAGACTGTGAATGAACTCTGTATGACTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCA
15621536 GCTGACCAGA
Statistics
Matches: 196, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
169 6 0.03
170 49 0.25
171 139 0.71
172 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAAC
CGACCGGAGAGGCGTAGTGCACAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGTTGCCGATCC
TGCTATCGATCCTGCTGCCACAACCCTCGGTCCAACTGGA
Found at i:15624489 original size:26 final size:26
Alignment explanation
Indices: 15624460--15624512 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15624450 CTGGTCCGAT
*
15624460 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15624486 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15624512 C
1 C
15624513 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15625244 original size:26 final size:26
Alignment explanation
Indices: 15625206--15625258 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625196 GGCTCAAAAT
15625206 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15625232 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
15625258 C
1 C
15625259 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15625522 original size:159 final size:158
Alignment explanation
Indices: 15625232--15625727 Score: 509
Period size: 159 Copynumber: 3.1 Consensus size: 158
15625222 ACTCTGTATG
** * * * * * *
15625232 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAAACAACGAAACGTGCGTGA-GGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGT-ACAGGCGCTCA
* * **
15625295 GCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCTCCCCCTATGTGCTGTCGAT
64 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC-CCCCCTGCGTGCTGTCGAT
* *
15625360 CCTGCTGCCGCAAACCTCAATCCGGTCCGAT
128 CCTGCTGCCGCAACCCTCGATCCGGTCCGAT
* * * * *
15625391 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * ** * * * *
15625456 TGG-TGAAAGAGGCATAATGCGCAAGCAAGGGATTGGCCCGGTCCCCCTCTGCGTGCTGCCGGTC
66 CGGCCG-AAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * * **
15625520 CTGCTGCCACAACCCTCGGTCCAG-CTGGGG
129 CTGCTGCCGCAACCCTCGATCCGGTC-CGAT
* * * *
15625550 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTACAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* * *
15625614 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCTGCGTGTTGTCGATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
*
15625678 TGTTGCCGCAACCCTCGATCCGGTCCGAT
130 TGCTGCCGCAACCCTCGATCCGGTCCGAT
15625707 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
15625728 AATGCTTAGA
Statistics
Matches: 268, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 53 0.20
158 12 0.04
159 200 0.75
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCCGGTCCGAT
Found at i:15626478 original size:26 final size:25
Alignment explanation
Indices: 15626443--15626492 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
15626433 CTCAAAATCA
15626443 TAGACTGGAATGAACTCCGTATGCT
1 TAGACTGGAATGAACTCCGTATGCT
15626468 TAGACATGGAATGAACTCCGTATGC
1 TAGAC-TGGAATGAACTCCGTATGC
15626493 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCGTATGCT
Found at i:15626853 original size:158 final size:153
Alignment explanation
Indices: 15626458--15626887 Score: 402
Period size: 153 Copynumber: 2.8 Consensus size: 153
15626448 TGGAATGAAC
* * *
15626458 TCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTACAAG
1 TCCG-ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGC-GG
* * * * * *
15626523 TGCTCAGCC-GCCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCAGTCCCCCCTTGCGTGCT
64 CGCTCAGCCGGCCGGAGAGGCAGAATG-CCAAGCCGAGGATCGGCCCGGTCCCCCCTTACGTGCT
** ** * **
15626587 GTTGATCTTGCTGCTGCAACCCTCAG
128 GCCGATCCCGCTACCACAACCCTCAG
* * * * *
15626613 TCCGAT-CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGC
1 TCCGATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGCGGC
* * * * * * *
15626676 TGTTGAGCCGACCGAAGAGGCATAATGCACAGGCCGAGGATC-GACCGGT-CCCCCTCTACGTGC
65 -GCTCAGCCGGCCGGAGAGGCAGAATGC-CAAGCCGAGGATCGGCCCGGTCCCCCCT-TACGTGC
* *
15626739 TGCCGGTCCCGCTACCACAACCCTCGG
127 TGCCGATCCCGCTACCACAACCCTCAG
* * *
15626766 TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGC
1 TCC-GAT---GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGC
*
15626831 GGGCGCTCAGCCGGCCGGAGAGGCAGAATGCCTAAGTCGAGGATCGGCCCGGTCCCC
62 -GGCGCTCAGCCGGCCGGAGAGGCAGAATGCC-AAGCCGAGGATCGGCCCGGTCCCC
15626888 ATGCGTGCTG
Statistics
Matches: 214, Mismatches: 46, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
152 8 0.04
153 83 0.39
154 28 0.13
155 4 0.02
157 1 0.00
158 77 0.36
159 10 0.05
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (153 bp):
TCCGATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGCGGCG
CTCAGCCGGCCGGAGAGGCAGAATGCCAAGCCGAGGATCGGCCCGGTCCCCCCTTACGTGCTGCC
GATCCCGCTACCACAACCCTCAG
Found at i:15626965 original size:26 final size:26
Alignment explanation
Indices: 15626936--15626986 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15626926 GATCTGATCA
15626936 TAGACTGGGAATGAAC-TCTGTATGCT
1 TAGACTGGGAATGAACTTC-GTATGCT
*
15626962 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
15626987 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:15627696 original size:25 final size:25
Alignment explanation
Indices: 15627657--15627707 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
15627647 GGCTCAAACT
15627657 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
15627682 CTTAGACATGG-ATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
15627707 C
1 C
15627708 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:15634747 original size:26 final size:26
Alignment explanation
Indices: 15634709--15634761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15634699 GGCTCAAAAT
*
15634709 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15634735 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
15634761 C
1 C
15634762 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15635128 original size:159 final size:158
Alignment explanation
Indices: 15634734--15635236 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 158
15634724 AACTCCGTAT
* * * * * * *
15634734 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCAAACCCACAAAACGAGTGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15634799 CCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCAGT-CCCTCTATCGTGCTGTCGAT-
66 TCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCCTCT-GCGTGCTGTCGATC
15634862 CCGACTGCCACAACCCTCGGTCTGGTCTGA
130 CCG-CTGCCACAACCCTCGGTCTGGTCTGA
* * * * * * * *
15634892 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCAACGAAACAAGCGTGCGAGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
15634956 GTC-AGCCGAAGAGGCATAATGCGCAAGCTGAGGATCGACCCGGTCCCCTTCTGCGTGCTGTCGG
65 GTCGA-CCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCC-TCTGCGTGCTGTCGA
* *
15635020 TCCCGCTGCCACAACCCTCGGTTTGG-CTGGG
128 TCCCGCTGCCACAACCCTCGGTCTGGTCT-GA
* * * * * *
15635051 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAATGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15635116 TCGATCGGAGAGGTAGAATACGCAAG-TCGAAGATCGGCCCGATCCCCCCTGTGTGCTGTCGATC
66 TCGACCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATC
* * * * * * *
15635180 CTGCTGTCGCAACCCTCGATCCGATCAGA
130 CCGCTGCCACAACCCTCGGTCTGGTCTGA
*
15635209 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
15635237 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 143 0.52
159 120 0.44
160 8 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCTGGTCTGA
Found at i:15637787 original size:26 final size:26
Alignment explanation
Indices: 15637758--15637810 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15637748 CTAGTCCGAT
15637758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15637784 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15637810 C
1 C
15637811 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15638235 original size:159 final size:158
Alignment explanation
Indices: 15637936--15638259 Score: 359
Period size: 159 Copynumber: 2.0 Consensus size: 158
15637926 CTGTTGCTGG
* * * ** *
15637936 TCCTGCTACCACAACCCTCGGTCCGATCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCACAACACTTGGTCCGA-CTGGGGCTTAGACTAGGAATGAACTCCCTATGCCTAAG
* * * * * * * * * *
15638000 TCAACCCATGAAACGAGTGTTCGGACGTTGAGCCAGCCGGAGAGGCATAATGCGCAAGCTAGGGA
65 CCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCCAGAAAGGCAGAATGCGCAAGCCAGGGA
*
15638065 TAGGCTCGGTCCCCCTCTGCGTGCTACCGA
130 TAGGCTCGGTCCCCC-CTGCATGCTACCGA
*
15638095 TCTTGCTGCCACAACACTTGGTCCGACTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAG
1 TCCTGCTGCCACAACACTTGGTCCGACTGGGGCTTAGACTA-GGAATGAACTCCCTATGCCTAAG
* * * *
15638159 CCAACCCACGAAATGGGCGTGCGGGCGCTCAGCC-GACCAGAAAGGCAGAATGCGCATGCCAGGG
65 CCAACCCACGAAACGAGCGTGCGGACGCTCAGCCAG-CCAGAAAGGCAGAATGCGCAAGCCAGGG
* *
15638223 ATTGG-TCTGGTCCCCCCTGCATGCTATCGA
129 ATAGGCTC-GGTCCCCCCTGCATGCTACCGA
15638253 TCCTGCT
1 TCCTGCT
15638260 ACCGTAACCC
Statistics
Matches: 136, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
158 24 0.18
159 112 0.82
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TCCTGCTGCCACAACACTTGGTCCGACTGGGGCTTAGACTAGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCCAGAAAGGCAGAATGCGCAAGCCAGGGAT
AGGCTCGGTCCCCCCTGCATGCTACCGA
Found at i:15638683 original size:26 final size:26
Alignment explanation
Indices: 15638645--15638697 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15638635 CCGGTCCGAT
*
15638645 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15638671 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15638697 C
1 C
15638698 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15638700 original size:184 final size:184
Alignment explanation
Indices: 15638486--15638855 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
15638476 TCCGACTGGG
* * * *
15638486 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCACTCAG
* * * ** * * **
15638550 CCGGTCGGAGAGGCAGAATGTGTAAGCCGA-GGATCAGCCCGATCCCCCACTGCGTGCTGCCAAT
66 CCAGTAGGAAAGGCAGAATACGCAAG-CGAGGGATCAGCCCAATCCCCC-CCACGTGCTGCCAAT
* *
15638614 CCTGCTGCCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
129 CCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
* *
15638670 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACAAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCACTCAG
* * * * *** *
15638735 TCAGTAGGAAAGGTAGAATACGCAAGCTAGGGATCGGCCCAATCCCCCCCACGTGCTGTTGATTC
66 CCAGTAGGAAAGGCAGAATACGCAAGCGAGGGATCAGCCCAATCCCCCCCACGTGCTGCCAATCC
* *
15638800 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGACCTTCGTAT
131 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
15638854 GC
1 GC
15638856 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 122 0.78
185 35 0.22
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCACTCAG
CCAGTAGGAAAGGCAGAATACGCAAGCGAGGGATCAGCCCAATCCCCCCCACGTGCTGCCAATCC
TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:15639552 original size:350 final size:340
Alignment explanation
Indices: 15638829--15639597 Score: 857
Period size: 350 Copynumber: 2.2 Consensus size: 340
15638819 CCGGTCTGAT
* * * *
15638829 CTTAGACTGGGAATGACCTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGC
1 CTTAGACTGGG-ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGC
* * * * * *
15638894 CGATCGGAGAGGCATAATGAGCAAGCCAGGGATTAGCCCGGTCCCCCTCTACATGTTGTCGGTCC
65 CGGTCGGAGAGGCATAATGAGCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGCTATCGATCC
* *
15638959 CACTGCCACAACCCTCGGTTCGGCTGGGGCTTAAACATAGAATGAACTCCCTATGCCTAAGCCAA
130 CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAAACATAGAATGAACTCCCGATGCCTAAGCCAA
* * *
15639024 ACCACGAAACGAGCGTGCTGGCGCTCAGCCGATCGGAGAGGCAAATGCATAAGCCGGGCATCAGC
195 ACCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAATGCATAAGCCAGGCATCAGC
* * * *
15639089 CCAGTCCCCCTGCGTGCTGTTGATCCTGCTACCACAACCCTCGGTTCGATCCGATCTTAGACTGG
260 CCAGTCCCCCTGCGTGCTATCGATCCTACTACCACAACCCTCGGTTCGATCCGATCTTAGACTAG
15639154 GAATGAACTCTATATG
325 GAATGAACTCTATATG
* *
15639170 CTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACT-GGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGC
* * ***
15639235 CGGTCGGAGAGGCATAATGCGCAAGCC-GAGGATCAGCCTGATCCCCCTCTGTGTGCTATCGATC
65 CGGTCGGAGAGGCATAATGAGCAAGCCAG-GGATCAGCCCGATCCCCCTCTACATGCTATCGATC
* ** * * *
15639299 CCGCTGCCGGTCCTACTGCCACTTGGTCCGGCTGGGGCTTAGACATGGAATGAAC-CCCGGATGC
129 CCACT----G-CC-ACAACC-CTCGGTCCGGCTGGGGCTTAAACATAGAATGAACTCCC-GATGC
* * * **
15639363 CTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACC-GAGGAGGCAGAATGTGTAAGC
186 CTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA-GAGGCA-AATGCATAAGC
* ** * * * * * *
15639427 CAAGG-ATCGGCCTGGTCCCCCCTGTGTGCTATCGATCCTATTATCGCAACCCTTGG-TCTGGTC
249 C-AGGCATCAGCCCAGT-CCCCCTGCGTGCTATCGATCCTACTACCACAACCCTCGGTTC-GATC
* *
15639490 TGATCTTAGACTAGGAATGAACTCTTTATG
311 CGATCTTAGACTAGGAATGAACTCTATATG
* * *
15639520 CTTAGACTAGGGATGAACTCCGTATACCTAAGTCAACCCATGAAACGAGCGTGC-GAGCGCTCAA
1 CTTAGACT-GGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGA-CGCTCAG
* *
15639584 TCGGCCGGAGAGGC
64 CCGGTCGGAGAGGC
15639598 CGATTGAAGA
Statistics
Matches: 356, Mismatches: 56, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
340 1 0.00
341 110 0.31
342 3 0.01
345 1 0.00
346 2 0.01
347 9 0.03
348 78 0.22
349 22 0.06
350 130 0.37
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (340 bp):
CTTAGACTGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGCC
GGTCGGAGAGGCATAATGAGCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGCTATCGATCCC
ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAAACATAGAATGAACTCCCGATGCCTAAGCCAAA
CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAATGCATAAGCCAGGCATCAGCC
CAGTCCCCCTGCGTGCTATCGATCCTACTACCACAACCCTCGGTTCGATCCGATCTTAGACTAGG
AATGAACTCTATATG
Found at i:15640083 original size:26 final size:26
Alignment explanation
Indices: 15640032--15640084 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15640022 CCGGTCTGAT
* *
15640032 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15640058 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15640084 C
1 C
15640085 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15641421 original size:26 final size:26
Alignment explanation
Indices: 15641383--15641435 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15641373 CTGGTCTGAT
15641383 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
15641409 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
15641435 C
1 C
15641436 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15641836 original size:159 final size:155
Alignment explanation
Indices: 15641408--15641837 Score: 429
Period size: 159 Copynumber: 2.7 Consensus size: 155
15641398 AACTCCGTAT
* * *
15641408 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * ** *
15641473 CCGGTCGTAGAGGCAGAATGCATAAGCCGGGGACCAGCTCGATCCCCC-CTGCGTGTTGTCGATT
66 CCGGT-GGAGAGGCAGAATGCATAAGCCGGGGATCACCT-GATCCCCCTCTGCATGCTACCGATG
* *
15641537 CTGTGCCGCAACCCTTGGTCTGATCCAA
129 CCGTGCCACAACCCTTGGTCTGA-CCAA
* * * * *
15641565 TCTTAGA-TTGGGAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
15641629 ACCGGTTGGAGAGGCATAATG-AGCAAGCCAAGGATCGCCCCGATCCCCCTCTGCATGCTACC-A
65 ACCGG-TGGAGAGGCAGAATGCA-TAAGCCGGGGATC-ACCTGATCCCCCTCTGCATGCTACCGA
* *
15641692 GTGCCGCTGCCACAACCCTTGGTCCTG-CTAGG
127 -TGCCG-TGCCACAACCCTTGGT-CTGACCA-A
** * *
15641724 GCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
*
15641789 CCGGCTGGAGAGGCAGAATGCATAAGCCGGGGATACACCTGAACCCCCT
66 CCGG-TGGAGAGGCAGAATGCATAAGCCGGGGAT-CACCTGATCCCCCT
15641838 GCGTACTGTC
Statistics
Matches: 218, Mismatches: 43, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 89 0.41
158 15 0.07
159 106 0.49
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGTGGAGAGGCAGAATGCATAAGCCGGGGATCACCTGATCCCCCTCTGCATGCTACCGATGCC
GTGCCACAACCCTTGGTCTGACCAA
Found at i:15642986 original size:26 final size:26
Alignment explanation
Indices: 15642957--15643007 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15642947 CTGGTTCGAT
*
15642957 CTTAGACTGG-GAATGAACTTCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
15642983 CTTAGACTGGAGATGAACTCCGTAT
1 CTTAGACTGGAGATGAACTCCGTAT
15643008 ACGTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:15643092 original size:184 final size:184
Alignment explanation
Indices: 15642798--15643363 Score: 510
Period size: 196 Copynumber: 3.0 Consensus size: 184
15642788 TCTAGCTGGG
* * * * * * * *
15642798 GCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAC
** * * * ***
15642863 TCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCGGGTCGATCCCCCCTACGTGCTGTCGACCC
66 TCGACCGAAGAGGCAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCTACGTGCTGTCGACCC
* * *
15642928 TACTACCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTAT
131 TACTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
* * * **
15642982 GCTTAGAC-TGGAGATGAACTCCGTATACGTAAGTCAACCCATGAAACGAGCATACGGGCGTTCA
1 GCTTAGACATGGA-ATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTC-
* ** *
15643046 ACT-GACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGTGTGCTGCCGAT
64 ACTCGACCGAAGAGGCAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCTACGTGCTGTCGA-
* * *
15643110 CCTGCTATTGGTCCTGCTGCTGCAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCA
128 CC--CTA------CTGC--C-GCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCG
15643175 TAT
182 TAT
* * * * *
15643178 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAC
* * * * * * * *
15643243 TCGGCTGGAGTGGCAGAATGCGCAAG-TCGGGGACCAACCCGGTCCCCCCCACGTGCTGTCGATC
66 TCGACCGAAGAGGCAGAATGCGCAAGCT-GGGGACCGACCCGATCCCCCCTACGTGCTGTCGACC
** * * * *
15643307 CTGTTGTCGCAACCTTCGGTCCAG-TCTGATCTTAAACTGGGAATGAACTCCGTAT
130 CTACTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTAT
15643362 GC
1 GC
15643364 CTAAGTCAAC
Statistics
Matches: 304, Mismatches: 60, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
183 5 0.02
184 137 0.45
185 5 0.02
187 5 0.02
193 5 0.02
195 5 0.02
196 138 0.45
197 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAC
TCGACCGAAGAGGCAGAATGCGCAAGCTGGGGACCGACCCGATCCCCCCTACGTGCTGTCGACCC
TACTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15643191 original size:26 final size:26
Alignment explanation
Indices: 15643153--15643205 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15643143 CCGGTCCGAT
15643153 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15643179 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15643205 C
1 C
15643206 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15643684 original size:26 final size:26
Alignment explanation
Indices: 15643633--15643685 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15643623 CCGATCTGAT
**
15643633 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15643659 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15643685 C
1 C
15643686 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15644552 original size:26 final size:26
Alignment explanation
Indices: 15644501--15644553 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15644491 CCGATCCAAT
*
15644501 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15644527 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15644553 C
1 C
15644554 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15645213 original size:868 final size:852
Alignment explanation
Indices: 15643468--15645498 Score: 2232
Period size: 868 Copynumber: 2.3 Consensus size: 852
15643458 TACCGATTCG
* *
15643468 GCTAGGGCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGT
1 GCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGT
* * * * *
15643533 GCTCAGCTGACTGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTACGTGCTAC
66 GCTCAACCGAC-GGAGAGGTAGAATGCGCAAGCCGAGGATCGGCC-GGTCCCCCCTACGTGCTAC
* * *
15643598 CGATCCTGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTTTATGCTTA
129 CGATCCTGCTA-CGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTA
* *
15643663 GACTGGGGATGAACTCCGTATGCCTAGGTCAACCCACAAAACGAGCGTGCGAGCGCTCAGCCGGC
193 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGC
* * ** *
15643728 TGGAGAGGTTGGTCAGAGAGGCATAATGCACGAGCTGGGGATCAGCCCGGTCCCCCTATGCATGC
258 CGGAGA----GG-CAGA-ATGCGCAAT-C-C-A--T--GGATCAGCCCAGTCCCCCTATGCATGC
*
15643793 TGTCAATTCTGTTGCTGGTCCTGCTGCCACAACCTTCGGTCCAGCTGGGGCTTAGACATGGAATG
310 TGTCAATTCTGTTGCTGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATG
* * *
15643858 AACTCTGTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAG
375 AACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGAGGCAG
* ** * *
15643923 ATTATGCAAGATGGGGATCGGGTCAGTCCCCCTTTGTGTGCTACCGATCCTACTGCCAACCCTCA
440 A-TATGCAAGATAGGGATCGGCCCAGTCCCCCTGTGTATGCTACCGATCCTACTGCCAACCCTCA
*
15643988 GTCCGATCTGATCTTAGACTGGGAACAAACTTCGTATCCTTAGACATGGAATGAACTCCGTATGC
504 GTCCGATCCGATCTTAGACTGGGAACAAACTTCGTATCCTTAGACATGGAATGAACTCCGTATGC
* * * *
15644053 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACTGAGAGGTAGAATGCACAAGCCG
569 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACGGAGAGGCAAAACGCACAAGCCG
* * * * ** *
15644118 AGGATCGGCCCGGCCCCCCCCCTCTGTGCTGTTGATCCTGCTGTCGTAACCCTCGGTCCGGTCCG
634 AGGATCGGCCCGGCACCCCCCATCTGTGCTGTCGATCCTCCTACCGCAACCCTCGGTCCGGTCCG
* *
15644183 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCAATGA
699 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCAATGA
** * * *
15644248 GTAGGTCAGAGAAGCATAATGCGCAAGCCGGTGATCAGCCCGATCCCCCTCTACGTACTGTCGGT
764 ACAGGTCAGAGAAGCATAATACACAAGCCGGTGATCAGCCCGATCCCCCTCTACGTACTATCGGT
* * *
15644313 CCCGCTGCTACAACCCTCAGTTCA
829 CCCGCTGCCACAACCCCCAGTCCA
* * * *
15644337 GCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGAGTACGGGT
1 GCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGT
* * * *
15644402 GCTCAACCAATCGGAGAGGTAGAATGCGTAAGTCGAGGATCAGCTCGGTCCCCCCTACGTGCTAC
66 GCTCAACCGA-CGGAGAGGTAGAATGCGCAAGCCGAGGATCGGC-CGGTCCCCCCTACGTGCTAC
* **
15644467 CTATCCTGCTACCGCAA-CCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCTATATGCTTA
129 CGATCCTGCTA-CGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTA
* * * * *
15644531 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAACCGGC
193 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGC
* * * * * *** *
15644596 CGGAGAGGCATAATGCGCAATCCATGGATTATCTCAGTCCCCCTCTTTGTGCTGGT-GATCTCAC
258 CGGAGAGGCAGAATGCGCAATCCATGGATCAGCCCAGTCCCCCTATGCATGCT-GTCAAT-T--C
**
15644660 TG-T-C-GGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTA
319 TGTTGCTGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCTGTA
* *
15644722 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGAGGCAGA-ATGCACA
384 TGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGAGGCAGATATG--CA
* * **
15644786 AGCTAGGGATCGGCCCGGTCCCTTCCTGCGTGCTATCGATCTTACTGCTTG-TCCTGTTGCCGTA
447 AGATAGGGATCGGCCCAGTCCC--CCT--GTG-TAT-G--C-TAC--C--GATCCTACTGCC--A
* ** *
15644850 ACCCTCAGTCCGATCCGATCTTAGATTGGGAATGAAC-TCTGTATGCTTAGACATGGAATGAACT
497 ACCCTCAGTCCGATCCGATCTTAGACTGGGAACAAACTTC-GTATCCTTAGACATGGAATGAACT
15644914 CCGTATGCCTAAGCCAACCCAC-AGAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAAAAC
561 CCGTATGCCTAAGCCAACCCACGA-AACGAGCGTGCGGGCGCTCAGTCGA-CGGAGAGGCAAAAC
* * * * *
15644978 GCAGAAGCCGGGGA-CTGG-CCTG-ATCCCCCATGC-GTGCTGTCGATCCTCCTACCGCATCCCT
624 GCACAAGCCGAGGATC-GGCCCGGCACCCCCCAT-CTGTGCTGTCGATCCTCCTACCGCAACCCT
* * * *
15645039 CGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCCCGAAATGAGTG
687 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCG
** ** * ** * *
15645104 TTTGGGTGATGAACCGGTC-GTAGGGGCATAGTACATAA-CTCGAG-GATC-GCACCGATCCCCC
752 TACGGGCAATGAACAGGTCAG-AGAAGCATAATACACAAGC-CG-GTGATCAGC-CCGATCCCCC
* * * *
15645165 TCTACGTCCTATCGGTCCCGTTGCCACAACCCCCCGTCCG
813 TCTACGTACTATCGGTCCCGCTGCCACAACCCCCAGTCCA
* * * *
15645205 GTTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTGCGGGC
1 GCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGT
* * * * * * * *
15645270 ACT-AAGCCGGCCGGAGAGGTAGAATGCGCAAGCCAAGGATTGGCCCGGGCCCCTCTGCGTGCTG
66 GCTCAA-CC-GACGGAGAGGTAGAATGCGCAAGCCGAGGATCGG-CCGGTCCCCCCTACGTGCTA
* * * * *
15645334 CCGATCCTACGT-CGCAACCCTGGGTCCGGTTTGATCTTAGACTGGGAATGAACTAC-GTATGCT
128 CCGATCCTGC-TACGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT-CTATATGCT
* * *
15645397 TAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-ATGCACTCAGCC
191 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCGCTCAGCC
* * * *
15645461 GGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCC
255 GGCCGGAGAGGCAGAATGCGCAATCCATGGATCAGCCC
15645499 GATCACCCCC
Statistics
Matches: 971, Mismatches: 152, Indels: 79
0.81 0.13 0.07
Matches are distributed among these distances:
853 3 0.00
855 148 0.15
856 4 0.00
857 5 0.01
858 3 0.00
859 3 0.00
860 3 0.00
861 2 0.00
862 6 0.01
863 4 0.00
864 5 0.01
866 1 0.00
867 19 0.02
868 501 0.52
869 238 0.25
870 26 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (852 bp):
GCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGT
GCTCAACCGACGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCGGTCCCCCCTACGTGCTACCG
ATCCTGCTACGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCGG
AGAGGCAGAATGCGCAATCCATGGATCAGCCCAGTCCCCCTATGCATGCTGTCAATTCTGTTGCT
GGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAA
GCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGAGGCAGATATGCAAGATAGGGA
TCGGCCCAGTCCCCCTGTGTATGCTACCGATCCTACTGCCAACCCTCAGTCCGATCCGATCTTAG
ACTGGGAACAAACTTCGTATCCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGTCGACGGAGAGGCAAAACGCACAAGCCGAGGATCGGCCCGGCACC
CCCCATCTGTGCTGTCGATCCTCCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATG
AACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCAATGAACAGGTCAGAGAAGCAT
AATACACAAGCCGGTGATCAGCCCGATCCCCCTCTACGTACTATCGGTCCCGCTGCCACAACCCC
CAGTCCA
Found at i:15645405 original size:26 final size:26
Alignment explanation
Indices: 15645369--15645421 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15645359 CCGGTTTGAT
15645369 CTTAGACTGGGAATGAACTAC-GTATG
1 CTTAGACTGGGAATGAACT-CTGTATG
* *
15645395 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15645421 C
1 C
15645422 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15647261 original size:159 final size:157
Alignment explanation
Indices: 15646781--15647283 Score: 454
Period size: 159 Copynumber: 3.2 Consensus size: 157
15646771 ACTCCGTATG
* * * * *
15646781 CTTACACTTGGAATGAACTCCGTGTGCCTAAGCCAATCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
** * * * *
15646846 CGGTCGGAAAGGTAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCATGCTGTCGATCCT
66 CGACCGGGAAGGTAAAATGCGCAAGCCGGGGATCGACCC-GTCCCCCCTGCGTGCTGTCGATCCT
* * * *
15646911 GCTGCTGCAACCCTCAGTTCAGTTTGAT
130 GCTGCCGCAACCCTCGGTCCAGTTCGAT
* * * * * * * *
15646939 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAGCCATGAAACGAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * *
15647004 CGACC--GAAGAGTCATAATGTGCAAGCCGGGGATCGGCACGATCCCCCTCTGTGTGCTATCGGT
66 CGACCGGGAAG-GT-AAAATGCGCAAGCCGGGGATCGACCCG-TCCCCC-CTGCGTGCTGTCGAT
* * ** * * **
15647067 CTTGCTGCCACAACCCTCGGTCTGGATGGGG
127 CCTGCTGCCGCAACCCTCGGTCCAGTTCGAT
* * * *
15647098 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGGTGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCGCTCA
* * * * * *
15647162 ATCAACCGGGAAGGTAAAATGCGTAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCCCATC
64 ACCGACCGGGAAGGTAAAATGCGCAAGCCGGGGATCGACCC-GTCCCCCCTGCGTGCTGTCGATC
*
15647227 CTGCTCCCGCAACCCTCGGTCCAGTTCGAT
128 CTGCTGCCGCAACCCTCGGTCCAGTTCGAT
* *
15647257 CTTAGACTGGGAATGGACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15647284 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 72, Indels: 19
0.74 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 84 0.32
159 124 0.47
160 42 0.16
161 3 0.01
162 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGACCGGGAAGGTAAAATGCGCAAGCCGGGGATCGACCCGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCAGTTCGAT
Found at i:15647306 original size:26 final size:26
Alignment explanation
Indices: 15647257--15647309 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15647247 CCAGTTCGAT
** *
15647257 CTTAGACTGGGAATGGACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
15647283 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15647309 C
1 C
15647310 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15647658 original size:184 final size:183
Alignment explanation
Indices: 15647468--15647833 Score: 499
Period size: 184 Copynumber: 2.0 Consensus size: 183
15647458 TGACTGGGGC
* * * *
15647468 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCGTTCA-AC
1 TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGAC
* * *
15647532 AGGCC-GA-AGAGCCAGAATGAGCGAGTCAGGG-ATCGGCCC-GATCCCCCCTGCGTGCTGTCGA
66 -GGCCAGAGA-AG-CAGAATGAGCAAG-CAGGGAATCGGCCCAG-TCCCCCCTACGTGCTGTCAA
*
15647593 TCCTGCTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGA
126 TCCTGC-ACCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGA
* * *
15647652 TTAGACATGGAATGAACTCTGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGAC
* * *
15647717 GGCCAGAGAAGCAGAATGTGCAAGCCGGGAATCGGCCCAGTCCCTCCTACGTGCTGTCAATCCTG
66 GGCCAGAGAAGCAGAATGAGCAAGCAGGGAATCGGCCCAGTCCCCCCTACGTGCTGTCAATCCTG
* *
15647782 CACCGTAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATATG
131 CACCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
15647834 CCTAAGTCAA
Statistics
Matches: 161, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
183 52 0.32
184 102 0.63
185 6 0.04
186 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (183 bp):
TTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGAC
GGCCAGAGAAGCAGAATGAGCAAGCAGGGAATCGGCCCAGTCCCCCCTACGTGCTGTCAATCCTG
CACCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGA
Found at i:15649587 original size:317 final size:317
Alignment explanation
Indices: 15648868--15650007 Score: 1186
Period size: 317 Copynumber: 3.6 Consensus size: 317
15648858 AACTCCATAT
* * * * * *
15648868 GCTTAGA-ATGGAATTAAACTCCGTATGCGTAAGCCAA-ACACGAAGCGAGGTCGT--GGGCGCT
1 GCTTAGACATGGAA-TGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGG-CGTGCGGGCACT
* * * * * **
15648929 CAGCCGGCCCGAAGAGGTAGAATGCGCAAGCCGGGGGATCGGCCCGATCCCCCCTTCGTGCTGTC
63 CAGTCGG-CCGGAGAGGCAGAATGCGCAAGCC-GGGGATCGGCTCGATCCCCCCTACGTGCTACC
* * * * * *
15648994 GATCTTGCTAG-CACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
126 GATCCTGCT-GTCACAACCCTCAGTCCGATCCGATCTTAGACTAGAAATGAACTCCGTATGCATA
** * *
15649058 AG-CAACCCACAAAACGAGCGTGCAGGCGCTGAGCTGACCGAAGAGGCATAAATGCGCAAGTCGG
190 AGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGCTGACCGAAGAGGCAT-AATGCGCAAGCCAG
* * * *
15649122 GGATCGACCCCGGTTCCCCCTTTGCGGTCTGCTGCCGATCGCCGCCTGCCACAACCCTCGATCCG
254 GGATCG-GCCCGG-TCCCCCTCTGC-G--TGCTGTCGGTC-CCG-CTGCCACAACCCTCGATCCG
*
15649187 GCTGGG
312 GATGGG
* ** ** * ** *
15649193 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCACCCCATTAAATTGACGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
* * * * * * *
15649258 CCAGCCGGAGAGGCAGAATGCTCAAACCAGGGATCGGCTCGATCCCCACTGCGTGCTACCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTACCGATCC
* * *
15649323 TGCTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTAGAAATGAACTCCGTACGCATAAGTCAA
131 TGCTGTCACAACCCTCAGTCCGATCCGATCTTAGACTAGAAATGAACTCCGTATGCATAAGTCAA
* * * * * *
15649388 CCCATGAAACAAGAGTGCGGGCACTGAGCTGGCCGAAGAGGCATAATACGCAAGCCAGGGATCGG
196 CCCATGAAACGAGCGTGCAGGCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
* * *
15649453 CCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTTGATCCGGTTGGG
261 CCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGATGGG
* *
15649510 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACAGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
** * * * * *
15649575 TCGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATCGAC-CCAGTCCCCCCTACGTACTATCGATC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGA-TCCCCCCTACGTGCTACCGATC
* * *** * * *
15649639 CTACTATTGTAACCCTC-GATCCGAACTGATCTTAGACTA-AGATTGAACTCCGTATGCATAAGT
130 CTGCTGTCACAACCCTCAG-TCCGATCCGATCTTAGACTAGA-AATGAACTCCGTATGCATAAGT
* *
15649702 CAACCCATGAAACGAGCGTGCAGGTGCTGAGCTGACCAAAGAGGCATAATGCGCAAGCCAGGGAT
193 CAACCCATGAAACGAGCGTGCAGGCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCCAGGGAT
* * * * *
15649767 CGGCTCGGTCCCCC-CTTCATGCTGTCGGTCCCACTACCACAACCCTCGATCCGGATGGG
258 CGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGATGGG
* * **
15649826 GCTTAGACATGGAATGAACTCCCTAGGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTTTG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
* * * *
15649891 TCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGAT-CCCCCTACGTGCTGCCAATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTACCGATCC
* ** * * * * *
15649955 TGCTGCCGTAACCCTCAGTTCAATCCAATCTTAGACTGGGAATGAACTCCGTA
131 TGCTGTCACAACCCTCAGTCCGATCCGATCTTAGACTAGAAATGAACTCCGTA
15650008 GGCTTAGATT
Statistics
Matches: 677, Mismatches: 126, Indels: 34
0.81 0.15 0.04
Matches are distributed among these distances:
315 55 0.08
316 135 0.20
317 246 0.36
318 3 0.00
319 9 0.01
321 1 0.00
322 10 0.01
323 6 0.01
324 103 0.15
325 87 0.13
326 22 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTACCGATCC
TGCTGTCACAACCCTCAGTCCGATCCGATCTTAGACTAGAAATGAACTCCGTATGCATAAGTCAA
CCCATGAAACGAGCGTGCAGGCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
CCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGATGGG
Found at i:15649811 original size:158 final size:157
Alignment explanation
Indices: 15648937--15649947 Score: 696
Period size: 158 Copynumber: 6.3 Consensus size: 157
15648927 CTCAGCCGGC
* * * **
15648937 CCGAAGAGGTAGAATGCGCAAGCCGGGGGATCGGCCCGATCCCCCCTTCGTGCTGTCGATCTTGC
1 CCGAAGAGGCAGAATGCGCAAGCC-AGGGATCGGCCCGGTCCCCCCTTCGTGCTGTCGATCCCGC
* * * *
15649002 TAGCACAACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACC
65 TACCACAACCCTCGA-TCCGG-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
**
15649065 CACAAAACGAGCGTGCAGGCGCTGAGCTGA
128 CATGAAACGAGCGTGCAGGCGCTGAGCTGA
* * * * * *
15649095 CCGAAGAGGCATAAATGCGCAAGTCGGGGATCGACCCCGGTTCCCCCTTTGCGGTCTGCTGCCGA
1 CCGAAGAGGCA-GAATGCGCAAGCCAGGGATCG-GCCCGG-TCCCCCCTT-C-G--TGCTGTCGA
* ** *
15649160 TCGCCGCCTGCCACAACCCTCGATCCGGCTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTA
59 TC-CCG-CTACCACAACCCTCGATCCGGCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTA
* * * * * *
15649224 AGCCACCCCATTAAATTGA-CGTGTAGGCGCTCAGC-CA
120 AGCCAACCCATGAAA-CGAGCGTGCAGGCGCTGAGCTGA
* * * * * * * ** *
15649261 GCCGGAGAGGCAGAATGCTCAAACCAGGGATCGGCTCGATCCCCACTGCGTGCTACCGATCCTGC
1 -CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTTCGTGCTGTCGATCCCGC
** * * * *
15649326 TGTCACAACCCTC-AGTCCGGTCTGATCTTAGACTAGAAATGAACTCCGTACGCATAAGTCAACC
65 TACCACAACCCTCGA-TCCGG-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
15649390 CATGAAACAAGAGTGCGGGCACTGAGCTGG
128 CATGAAACGAGCGTGCAGGCGCTGAGCTGA
* * * *
15649420 CCGAAGAGGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGC
1 CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTTCGTGCTGTCGATCCCGC
* * * * ** * *
15649485 TGCCACAACCTTTGATCCGGTTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACG
65 TACCACAACCCTCGATCCGGCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
15649549 CACGAAAC-AGGCGTACGGGCACTCAG-TCGG
128 CATGAAACGA-GCGTGCAGGCGCTGAGCT-GA
** * ** * * * * * **
15649579 TTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCTACGTACTATCGATCCTACT
1 CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTTCGTGCTGTCGATCCCGCT
**** * * * * *
15649644 ATTGTAACCCTCGATCCGAACTGATCTTAGACTAAGATTGAACTCCGTATGCATAAGTCAACCCA
66 ACCACAACCCTCGATCCG-GCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCA
*
15649709 TGAAACGAGCGTGCAGGTGCTGAGCTGA
130 TGAAACGAGCGTGCAGGCGCTGAGCTGA
* * * * * *
15649737 CCAAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTTCATGCTGTCGGTCCCACT
1 CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTTCGTGCTGTCGATCCCGCT
* ** * *
15649802 ACCACAACCCTCGATCCGGATGGGGCTTAGAC-ATGGAATGAACTCCCTAGGCCTAAGCCAACCC
66 ACCACAACCCTCGATCCGGCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * ** *
15649866 ACGAAACGGGCGTGCGGGCACTTTG-TCGG
129 ATGAAACGAGCGTGCAGGCGCTGAGCT-GA
* * * * *
15649895 CCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGAT-CCCCCTACGTGCTG
1 CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTTCGTGCTG
15649948 CCAATCCTGC
Statistics
Matches: 651, Mismatches: 169, Indels: 67
0.73 0.19 0.08
Matches are distributed among these distances:
157 17 0.03
158 348 0.53
159 143 0.22
160 19 0.03
161 1 0.00
162 2 0.00
163 1 0.00
164 16 0.02
165 5 0.01
166 63 0.10
167 34 0.05
168 2 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTTCGTGCTGTCGATCCCGCT
ACCACAACCCTCGATCCGGCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCAGGCGCTGAGCTGA
Found at i:15650020 original size:26 final size:26
Alignment explanation
Indices: 15649984--15650033 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15649974 TCAATCCAAT
15649984 CTTAGACTGGGAATGAACTCCGTAGG
1 CTTAGACTGGGAATGAACTCCGTAGG
* *
15650010 CTTAGATTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15650034 TGCCTAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:15650874 original size:26 final size:26
Alignment explanation
Indices: 15650839--15650889 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15650829 GTGTGCTCTT
* * *
15650839 AGACTGGGAATGAACTTCGTATGCTC
1 AGACTAGGAATGAACTCCATATGCTC
15650865 AGACTAGGAATGAACTCCATATGCT
1 AGACTAGGAATGAACTCCATATGCT
15650890 TAGATTGGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCATATGCTC
Found at i:15651928 original size:25 final size:26
Alignment explanation
Indices: 15651894--15651945 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
15651884 CCAGTTCAAT
15651894 CTTAGACTGG-GAATGAACTCC-TATG
1 CTTAGACTGGTG-ATGAACTCCATATG
15651919 CTTAGACTGGTGATGAACTCCATATG
1 CTTAGACTGGTGATGAACTCCATATG
15651945 C
1 C
15651946 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCATATG
Found at i:15652653 original size:26 final size:26
Alignment explanation
Indices: 15652615--15652667 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15652605 GGCTCAAAAT
15652615 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15652641 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15652667 C
1 C
15652668 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15654205 original size:26 final size:26
Alignment explanation
Indices: 15654168--15654218 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15654158 GCTCAAAATC
15654168 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
15654194 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
15654219 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:15654608 original size:159 final size:158
Alignment explanation
Indices: 15654194--15654608 Score: 404
Period size: 159 Copynumber: 2.6 Consensus size: 158
15654184 CTCCGTATGT
* * **
15654194 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGTT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * * * *
15654259 GGCCGGAGAGGCAAAATGCGCAAGCTGAGAATCAGCCCAGTCCCCCCTGCGTGCTGTCGATCCTG
66 GACCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCCTACGTGCTGTCGATCCCG
* * * * *
15654324 CTACCGTAATCCTTGGTCCGATCCAATC
131 CTACCGCAACCCTCGGTCCGAGCCAAGC
* * ** * * * * * *
15654352 TTAAAC-TGGGAATGAACTCCGTATGCATAAGTGAACCCACGGAACAAGTGAGCGAGCACTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* * * * * * * *
15654416 CGACTGAAGAGGCATAATACGTAAGCCGAGGATCAGCTCAGTCCCCCTTTACGTGCTGTCGGTCC
65 CGACCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCAGTCCCCC-CTACGTGCTGTCGATCC
* * *
15654481 CGCTA-TGACAACCCTCGGTCC-AGCTAGGGC
129 CGCTACCG-CAACCCTCGGTCCGAGCCA-AGC
* * *
15654511 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * *
15654576 GACCGGAGAGGCAGAATGCACAAGCCGGGGATC
66 GACCGGAGAGGCAAAATGCGCAAGCCGAGGATC
15654609 GACCTGGTCC
Statistics
Matches: 198, Mismatches: 54, Indels: 9
0.76 0.21 0.03
Matches are distributed among these distances:
157 1 0.01
158 91 0.46
159 105 0.53
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
GACCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCCTACGTGCTGTCGATCCCG
CTACCGCAACCCTCGGTCCGAGCCAAGC
Found at i:15654697 original size:26 final size:26
Alignment explanation
Indices: 15654668--15654720 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15654658 CCGGTTTGAT
15654668 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
15654694 CTTATACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15654720 C
1 C
15654721 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15655429 original size:26 final size:26
Alignment explanation
Indices: 15655391--15655443 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15655381 GGCCCAAAAT
*
15655391 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15655417 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15655443 C
1 C
15655444 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15655824 original size:158 final size:158
Alignment explanation
Indices: 15655416--15655824 Score: 444
Period size: 158 Copynumber: 2.6 Consensus size: 158
15655406 AAGTCCATAT
*
15655416 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
15655481 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTATCGATCC
66 CCGGCCGAAGAGGCAAAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGCATGCTATCGATCC
* ** ** * *
15655546 TGCTGCTGCAACCCTTTATCCAGTTTGA
131 CGCTGCCACAACCCTCGATCCAGCTGGA
* * * * * * *
15655574 TCTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * * *
15655638 GCTGGCCGAAGAGGCATAATGCGCAAGCTGGGGATC-GGTCGGTCCCCCTCTGCATGTTGTCGGT
65 GCCGGCCGAAGAGGCAAAATGCGCAAGCTGGGGATCAGCCCGATCCCCC-CTGCATGCTATCGAT
* * ** *
15655702 CCCGCTGCCATAACCCTCGGTCTGGCTGGG
129 CCCGCTGCCACAACCCTCGATCCAGCTGGA
* * * **
15655732 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTATGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
15655797 CCGACCGAAGAGGCAGAATGCGGAAGCT
66 CCGGCCGAAGAGGCAAAATGCGCAAGCT
15655825 CGACATCGGC
Statistics
Matches: 202, Mismatches: 46, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
157 10 0.05
158 192 0.95
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAAAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGCATGCTATCGATCC
CGCTGCCACAACCCTCGATCCAGCTGGA
Found at i:15655833 original size:158 final size:157
Alignment explanation
Indices: 15655416--15655915 Score: 434
Period size: 158 Copynumber: 3.2 Consensus size: 157
15655406 AAGTCCATAT
*
15655416 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
15655481 CCGGCCGGAGAGGCAAAATGCGCAAGC-CGGGGATCAGCCCGATCCCCCCTGCATGCTATCGATC
66 CCGGCCGAAGAGGCAAAATGCGCAAGCTC-GGGATC-GGCCGATCCCCCCTGCATGCTATCGATC
* ** ** * *
15655545 CTGCTGCTGCAACCCTTTATCCAGTTTGA
129 CCGCTGCCACAACCCTCGATCCAGCTGGA
* * * * * * *
15655574 TCTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
15655638 GCTGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGGTCGGTCCCCCTCTGCATGTTGTCGGTC
65 GCCGGCCGAAGAGGCAAAATGCGCAAGCTCGGGATCGGCCGATCCCCC-CTGCATGCTATCGATC
* * ** *
15655703 CCGCTGCCATAACCCTCGGTCTGGCTGGG
129 CCGCTGCCACAACCCTCGATCCAGCTGGA
* * * **
15655732 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTATGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * **
15655797 CCGACCGAAGAGGCAGAATGCGGAAGCTCGACATCGGCCCAGTTCCCCCTGCGTGCTGCCGATCC
66 CCGGCCGAAGAGGCAAAATGCGCAAGCTCGGGATCGGCCGA-TCCCCCCTGCATGCTATCGATCC
* * * *
15655862 TGCTGTCGCAACCCTC-AGTCCAGTCT-AA
130 CGCTGCCACAACCCTCGA-TCCAG-CTGGA
* *
15655890 TCTTAGAT-TGGGAATGAACTCTGTAT
1 GCTTAGATAT-GGAATGAACTCCGTAT
15655916 CCTTAGACTA
Statistics
Matches: 265, Mismatches: 69, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 11 0.04
158 247 0.93
159 7 0.03
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAAAATGCGCAAGCTCGGGATCGGCCGATCCCCCCTGCATGCTATCGATCCC
GCTGCCACAACCCTCGATCCAGCTGGA
Found at i:15656198 original size:196 final size:197
Alignment explanation
Indices: 15655850--15656237 Score: 509
Period size: 196 Copynumber: 2.0 Consensus size: 197
15655840 TCCCCCTGCG
* * *
15655850 TGCTGCCGATCCTGCTGTCGCAACCCTCAGTCCAGTCTAATCTTAGATTGGGAATGAACTCTGTA
1 TGCTGCCGATCCTACTGTCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTA
* * * **
15655915 TCCTTAGACTAGGGATGAACTTCATATTCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTAT
66 TCCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAT
*
15655980 GCCTGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCC-AGTC-CCCCCTGCGTGCTGTCG
131 GCCTGCCGGAGAGGCAGAATGCGCAAGACGGGGA-CAGACCCGA-TCGCCCCCTGCGTGCTGTCG
15656042 ATCT
194 ATCT
* * ** * *
15656046 TGCTGCTGGTCCTACTGTCGCAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCCGATCCTACTGTCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTA
* * *
15656111 TGCTTAGACATA-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC
66 TCCTTAGAC-TAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-
* *
15656175 A-GCC-GACCGGAGAGGTAGAATGCGCAAGACGGGGACCGACCCGATCGCCCCCTGCGTGCTGTC
129 ATGCCTG-CCGGAGAGGCAGAATGCGCAAGACGGGGACAGACCCGATCGCCCCCTGCGTGCTGTC
15656238 AGTCCTGCTG
Statistics
Matches: 166, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
195 3 0.02
196 143 0.86
197 20 0.12
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (197 bp):
TGCTGCCGATCCTACTGTCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTA
TCCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAT
GCCTGCCGGAGAGGCAGAATGCGCAAGACGGGGACAGACCCGATCGCCCCCTGCGTGCTGTCGAT
CT
Found at i:15656580 original size:158 final size:155
Alignment explanation
Indices: 15656113--15656606 Score: 482
Period size: 158 Copynumber: 3.1 Consensus size: 155
15656103 ACTCCGTATG
* * *
15656113 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
* * * *
15656178 CGACCGGAGAGGTAGAATGCGCAAGACGGGGACCGACCCGATCGCCCCCTGCGTGCTGTCAGTCC
66 CGGCCGGAGAGGTAGAATGCGCAAG-CGAGGATCGACCCGATC-CCCCCTGCGTGCTGCCA-TCC
* * * *
15656243 TGCTGTCGTAACCCTCGGTCCGGTCTATT
128 T-CTATTGCAACCCTCGGTCCGGTCTAGT
* ** * *
15656272 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAGGCATGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * * *
15656336 CCGGCCGGAGCGGCATAACGCGCAAGCCAGGGATCGGCCC-AGTCCCCCACTGCGTGCTACCTAT
65 CCGGCCGGAGAGGTAGAATGCGCAAGCGA-GGATCGACCCGA-TCCCCC-CTGCGTGCTGCC-AT
*
15656400 CC-C-ATTCCACAACCCTCGGTCCGG-CTAGGGT
126 CCTCTATT--GCAACCCTCGGTCCGGTCTA--GT
* *
15656431 -TTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG-GACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCG-CTCAG
* * *
15656494 CTGGCCAGAGAGGTAGAATTCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
65 CCGGCCGGAGAGGTAGAATGCGCAAG-CGAGGATCGACCCGATCCCCCCTGCGTGCTGCC-ATCC
* * * *
15656559 TACTATTGCAACTCTCAGTCCGGTCCAAT
128 T-CTATTGCAACCCTCGGTCCGGTCTAGT
15656588 CTTAGAC-TGGAATGAACTC
1 CTTAGACATGGAATGAACTC
15656607 TGCATGCTTA
Statistics
Matches: 269, Mismatches: 48, Indels: 38
0.76 0.14 0.11
Matches are distributed among these distances:
156 1 0.00
157 32 0.12
158 126 0.47
159 106 0.39
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGTAGAATGCGCAAGCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCATCCTCT
ATTGCAACCCTCGGTCCGGTCTAGT
Found at i:15657785 original size:26 final size:26
Alignment explanation
Indices: 15657734--15657786 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15657724 CCGGTCTGAT
* *
15657734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
15657760 CTTAGACTGGGGATAAACTTCATATG
1 CTTAGACTGGGAATAAACTCCATATG
15657786 C
1 C
15657787 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15658130 original size:26 final size:26
Alignment explanation
Indices: 15658101--15658153 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15658091 CTGATCCAAT
*
15658101 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15658127 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15658153 C
1 C
15658154 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15658678 original size:158 final size:158
Alignment explanation
Indices: 15658127--15658681 Score: 508
Period size: 158 Copynumber: 3.5 Consensus size: 158
15658117 ACTCTGTATG
* * * * * *
15658127 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGTGCTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * *
15658192 CGACTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCATGCGTGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * **
15658257 GCTGCCGCTACCCTCGATCC-AGTCCAAT
131 GCTGCCGCAACCCTCGGTCCGA-TCTGAT
** * * *
15658285 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * * **
15658349 TCGATCGAAGAGGCATAATGTGTAAGTCAAGGATCGGCCTGGTCCCCCTCTATGTGCTGCC-AGT
65 CCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGA-T
* * **
15658413 CCCGCTGCCACAACCCTCGGTCCGA-CTGGGG
128 CCTGCTGCCGCAACCCTCGGTCCGATCT-GAT
* * * * * * * *
15658444 CTTAGACATGGAATGAACTCCCTATGCCTAATTCAAGCCATGAAACAAGTGTGCGGGCACTCGGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * *
15658509 CGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGATGCCGATCCT
66 CGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
* **
15658574 ACTATCGCAACCCTCGGTCCGATCTGAT
131 GCTGCCGCAACCCTCGGTCCGATCTGAT
* * * * *
15658602 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCCTACGGACGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
*
15658666 CCGACCAGAGAGGCAG
65 CCGACCGGAGAGGCAG
15658682 GGTAAGCAAG
Statistics
Matches: 307, Mismatches: 81, Indels: 18
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 185 0.60
159 118 0.38
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCGGTCCGATCTGAT
Found at i:15659534 original size:26 final size:26
Alignment explanation
Indices: 15659496--15659548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15659486 CTGATCCGAT
15659496 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15659522 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15659548 C
1 C
15659549 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15659777 original size:159 final size:158
Alignment explanation
Indices: 15659521--15659830 Score: 410
Period size: 159 Copynumber: 2.0 Consensus size: 158
15659511 AACTCCATAT
*
15659521 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * *
15659586 CCGAACGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTTTGCGTCCTGCCGATC
66 CCGAACGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCAGTCCCCC-CTACGTCCTGCCGATC
15659651 CCACTACCACAACCCTCGGTCCGGCTAGG
130 CCACTACCACAACCCTCGGTCCGGCTAGG
* * *
15659680 GCTTAGACATGGAATGAGCTCAC-TATGCCTTAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGGCGCTC
* * * * * *
15659743 AATCGATCGGAGAGGCAGAATGCGCAA-ATCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGA
64 AACCGAACGGAGAGGCAAAATGCGCAAGCT-GGGGATCGACCCAGTCCCCCCTACGTCCTGCCGA
** *
15659807 TCCTGCTGCCACAACCCTCGGTCC
128 TCCCACTACCACAACCCTCGGTCC
15659831 AGTCCTATCT
Statistics
Matches: 131, Mismatches: 17, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
158 33 0.25
159 97 0.74
160 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.16
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
CCGAACGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCTACGTCCTGCCGATCC
CACTACCACAACCCTCGGTCCGGCTAGG
Found at i:15659875 original size:26 final size:26
Alignment explanation
Indices: 15659839--15659891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15659829 CCAGTCCTAT
15659839 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
15659865 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15659891 C
1 C
15659892 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15661317 original size:171 final size:170
Alignment explanation
Indices: 15661032--15661427 Score: 433
Period size: 171 Copynumber: 2.3 Consensus size: 170
15661022 TGCCGATCCC
* * * * **
15661032 GCTACCACAACCCTCGGTCTGGTTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTTAGCCAAC
1 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
* * * * *
15661097 CCACGCAACGGGCGTGCAGGCGCTCAGCAGGCTGGAGACATAGAATGCGCAAACCCGGGATCAGC
66 CCACGAAACGAGCGTGCAGGCGCTCAGCAGACCGGAGACACAGAATGCGCAAACCCGGGATC-GC
* *
15661162 CCA-ATCCCCCTCTGCGTGCTGCCGAT-CTCGCTGCTGGTCCT
130 CCAGATCCCCC-CTGCATGCTGCCGATCCT-GCTACTGGTCCT
*
15661203 GCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
1 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
* * * * ** ** * *
15661268 CCACGAAATGAGCGTGCGGGGGTTCAGTC-GACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG
66 CCACGAAACGAGCGTGCAGGCGCTCAG-CAGACCGGAGACACAGAATGCGCAAACCCGGGATCGC
* *
15661332 CCAGGTCCCCCCTGCATGCTGTCGATCCTGCTACTGGTCCT
130 CCAGATCCCCCCTGCATGCTGCCGATCCTGCTACTGGTCCT
* * **
15661373 GCTACCGCAACCCTCGATCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTACCACAACCCTCGGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGC
15661428 TTAGACATGG
Statistics
Matches: 189, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
169 1 0.01
170 73 0.39
171 114 0.60
172 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (170 bp):
GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
CCACGAAACGAGCGTGCAGGCGCTCAGCAGACCGGAGACACAGAATGCGCAAACCCGGGATCGCC
CAGATCCCCCCTGCATGCTGCCGATCCTGCTACTGGTCCT
Found at i:15661430 original size:26 final size:26
Alignment explanation
Indices: 15661401--15661453 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15661391 CCGGTCTGAT
15661401 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15661427 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15661453 C
1 C
15661454 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15661794 original size:26 final size:26
Alignment explanation
Indices: 15661742--15661794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15661732 CTGGTTCGAT
*
15661742 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
15661768 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15661794 C
1 C
15661795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15662392 original size:11 final size:11
Alignment explanation
Indices: 15662373--15662405 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15662363 CGGTTAGGCT
*
15662373 CTCCGGCGATG
1 CTCCAGCGATG
15662384 CTCCAGCGATG
1 CTCCAGCGATG
15662395 CTCCAGCGATG
1 CTCCAGCGATG
15662406 GTGCCCCGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCAGCGATG
Found at i:15663723 original size:26 final size:26
Alignment explanation
Indices: 15663672--15663724 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15663662 CCGATCTGAT
* *
15663672 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTACATATG
**
15663698 CTTAGACTGGGGATGAACTACATATG
1 CTTAGACTGGAAATGAACTACATATG
15663724 C
1 C
15663725 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACATATG
Found at i:15665596 original size:159 final size:159
Alignment explanation
Indices: 15665298--15665605 Score: 399
Period size: 159 Copynumber: 1.9 Consensus size: 159
15665288 CTCTGTATGC
* * *
15665298 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACC
* * * * *
15665363 GGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGTTGTCGGTCCC
66 GGCCAGAGAGGAAGAATGCACAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATCCC
15665428 GCTACCATAACCCTCGGTCTGGCTGGGGA
131 GCTACCATAACCCTCGGTCTGGCTGGGGA
* * * *
15665457 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACC
* * *
15665522 GGTCAGGAGAGGAAGAATGCATAAGTCAG-GGATC-AGCCCGGTCCCCCT-TGCGTGCTG-CTGA
66 GGCCA-GAGAGGAAGAATGCACAAG-CAGAGGATCGA-CCCAGTCCCCCTCTGCGTGCTGTC-GA
* *
15665583 TCCTGCTATCATAACCCTCGGTC
127 TCCCGCTACCATAACCCTCGGTC
15665606 CAATCTGATC
Statistics
Matches: 128, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
158 1 0.01
159 93 0.73
160 32 0.25
161 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACC
GGCCAGAGAGGAAGAATGCACAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATCCC
GCTACCATAACCCTCGGTCTGGCTGGGGA
Found at i:15665620 original size:159 final size:159
Alignment explanation
Indices: 15665296--15665641 Score: 389
Period size: 159 Copynumber: 2.2 Consensus size: 159
15665286 AACTCTGTAT
* *
15665296 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * *
15665361 CCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGTTGTCGGTC
66 CCGGCCAGAGAGGAAGAATGCACAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATC
** *
15665426 CCGCTACCATAACCCTCGGTCTGGCTGGG
131 CCGCTACCATAACCCTCGGTCAAGCTGGA
* * * * *
15665455 GATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * *
15665520 CTGGTCAGGAGAGGAAGAATGCATAAGTCAG-GGATC-AGCCCGGTCCCCCT-TGCGTGCTG-CT
66 CCGGCCA-GAGAGGAAGAATGCACAAG-CAGAGGATCGA-CCCAGTCCCCCTCTGCGTGCTGTC-
* * *
15665581 GATCCTGCTATCATAACCCTCGGTCCAATCT-GA
127 GATCCCGCTACCATAACCCTCGGT-CAAGCTGGA
*
15665614 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15665642 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
158 2 0.01
159 117 0.75
160 35 0.22
161 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCGGCCAGAGAGGAAGAATGCACAAGCAGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATC
CCGCTACCATAACCCTCGGTCAAGCTGGA
Found at i:15665810 original size:26 final size:26
Alignment explanation
Indices: 15665772--15665824 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15665762 GGCTCAAACT
*
15665772 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15665798 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15665824 C
1 C
15665825 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15666737 original size:26 final size:26
Alignment explanation
Indices: 15666699--15666751 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15666689 GGCTCAAACT
15666699 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
15666725 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
15666751 C
1 C
15666752 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15667235 original size:26 final size:26
Alignment explanation
Indices: 15667197--15667249 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15667187 GGCTCAAACT
15667197 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15667223 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15667249 C
1 C
15667250 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15673247 original size:26 final size:26
Alignment explanation
Indices: 15673211--15673261 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15673201 CTGATTCGAT
15673211 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
15673237 CTTATACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
15673262 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:15673629 original size:26 final size:26
Alignment explanation
Indices: 15673591--15673643 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15673581 CCTATCTGAT
15673591 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15673617 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15673643 C
1 C
15673644 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15674236 original size:354 final size:351
Alignment explanation
Indices: 15673589--15674238 Score: 754
Period size: 354 Copynumber: 1.8 Consensus size: 351
15673579 GTCCTATCTG
* * **
15673589 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAAACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACACCTAAGCCAAC
* ** * * ** *
15673654 CCACGAATTGAGCATGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAAC
66 CAACGAAACGAGCATGCGGGCGCTCAGTCAGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAAC
*
15673719 CTGTCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTTTGATCCAATCTTAGACAAGG
131 CTGTCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTTAGATCCAATCTTAGACAAGG
* * * **
15673784 AATGAACTCTGTATGCCTAAGTCAACTAATGAAACAAGCACACGGGTGCTAAACCGACTGGAGAG
196 AATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCACACGGGCACTAAACCGACTGGAGAG
*
15673849 GCATAATGCGCAAGTTGAGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCTGCTACTGGTTC
261 GCATAATGCGCAAGTAGAGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCTGCTACTGGTTC
15673914 TCTATCGCAACCATCAGTCCCGTCCA
326 TCTATCGCAACCATCAGTCCCGTCCA
* *
15673940 ATCTTAAACTAGGAATGAACTCTGA-ATGCTTAGACATGGAATGAACTCCGTACACTTAAGCCAA
1 ATCTTAAACTAGGAATGAACTC-CATATGCTTAGACATGGAATGAACTCCGTACACCTAAGCCAA
** * * * *
15674004 CCAACGAAACGAGTGTGCGGGCGTTCAG-CTAGCCGGAGAGGCAGAATGCACAAGCTGGGGACC-
65 CCAACGAAACGAGCATGCGGGCGCTCAGTC-AGCCAGAGAGGCAGAATGCACAAGCCGAGGACCA
** * * * **
15674067 GTCTCGATCCCCCACTGTGTGCTGTCGATCCTACTGGCACAACCCTTGGTTCAG-TCTGATCTTA
129 ACCT-G-T-CCCC-CTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTT-AGATCCAATCTTA
** * * * **** * *
15674131 GACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGTGTTCGGGCACTGAGCCGA-
189 GACAAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCACACGGGCACTAAACCGAC
* *
15674195 TCGGAGAGGCATAATGCGCAAGTCAG-GGATTAGCTCGATCCCCC
254 T-GGAGAGGCATAATGCGCAAGT-AGAGGATCAGCCCGATCCCCC
15674239 TCTGCATGCT
Statistics
Matches: 243, Mismatches: 47, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
350 3 0.01
351 104 0.43
352 2 0.01
353 5 0.02
354 127 0.52
355 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.21
Consensus pattern (351 bp):
ATCTTAAACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACACCTAAGCCAAC
CAACGAAACGAGCATGCGGGCGCTCAGTCAGCCAGAGAGGCAGAATGCACAAGCCGAGGACCAAC
CTGTCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTTAGATCCAATCTTAGACAAGG
AATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCACACGGGCACTAAACCGACTGGAGAG
GCATAATGCGCAAGTAGAGGATCAGCCCGATCCCCCCTACGTGCTATCAATCCTGCTACTGGTTC
TCTATCGCAACCATCAGTCCCGTCCA
Found at i:15674948 original size:26 final size:26
Alignment explanation
Indices: 15674910--15674962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15674900 TGCTGCTGGT
*
15674910 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15674936 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15674962 C
1 C
15674963 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15675042 original size:166 final size:165
Alignment explanation
Indices: 15674747--15675049 Score: 394
Period size: 166 Copynumber: 1.8 Consensus size: 165
15674737 ATCCGATCTC
* *
15674747 AGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTCAGCTAACCCATG
1 AGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
*** ** * * * * *
15674812 AAACGAGCGTGTGGGCACTCAGTCGACTGGAGAGGCAGAATGCATAAGTCGGGGATCGACCCGAT
66 AAACGAGCGTACAGGCACTCAACCGACTGGAGAGGCAGAATACACAAGCCGAGGATCAACCCGAT
15674877 CCCTCCCTGTGTGCTTCCAATCCTGCTGCTGGTCTT
131 CCC-CCCTGTGTGCTTCCAATCCTGCTGCTGGTCTT
*
15674913 AGACTGGGAATGAACTCCTTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 AGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
* ** ** *
15674978 AATCGAGCGTACAGGTGCTCAACC-AGCTGGAGAGGTGGAATACGCAAGCCGAGGA-CTAACCCG
66 AAACGAGCGTACAGGCACTCAACCGA-CTGGAGAGGCAGAATACACAAGCCGAGGATC-AACCCG
15675041 ATCCCCCCT
129 ATCCCCCCT
15675050 ACGTGCTGCC
Statistics
Matches: 116, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
165 6 0.05
166 110 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (165 bp):
AGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTACAGGCACTCAACCGACTGGAGAGGCAGAATACACAAGCCGAGGATCAACCCGAT
CCCCCCTGTGTGCTTCCAATCCTGCTGCTGGTCTT
Found at i:15675350 original size:159 final size:157
Alignment explanation
Indices: 15674935--15675436 Score: 426
Period size: 159 Copynumber: 3.2 Consensus size: 157
15674925 AACTCCTTAT
* *
15674935 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATCGAGCGTACAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCGA
* * * * * *
15675000 CCAGCTGGAGAGGTGGAATACGCAAGCCGAGGA-CTAACCCGATCCCCCCTACGTGCTGCCGAAC
66 CCAGCCGGAGAGGTAGAATGCGCAAGCCG-GGATC-AGCCCGATCCCCCCTACGTGCTACAGAAC
* *
15675064 CTGCTACCACAACCCTTGGTCTGGTCTGA
129 CTACTACCACAACCCTTGATCTGGTCTGA
* * * * * ** * * **
15675093 TCATAGAC-TGGGGATGAACTCCGTATGCCCAAGTCAACCCACAAAATGAGCGTACAAGCACT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCG
* * * * * *
15675156 AACCAGTCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACAG-
65 -ACCAGCCGGAGAGGTAGAATGCGCAAG-CCGGGATCAGCCCGATCCCCC-CTACGTGCTACAGA
** * *
15675220 GTCTCACTGCCACAACCCTTGATCTGG-CTGGG
127 ACCT-ACTACCACAACCCTTGATCTGGTCT-GA
* * * *
15675252 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCGA
* * * * * *
15675317 CCAGCCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCTTACGTGCTGTC-GATC
66 CCAGCCGGAGAGGTAGAATGCGCAAGCC-GGGATCAGCCCGATCCCCCCTACGTGCT-ACAGAAC
* ** * *
15675380 CTACTGCTGCAACCCTCGATCTGATCTGA
129 CTACTACCACAACCCTTGATCTGGTCTGA
*
15675409 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15675437 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 66, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 52 0.20
158 97 0.37
159 112 0.42
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCGA
CCAGCCGGAGAGGTAGAATGCGCAAGCCGGGATCAGCCCGATCCCCCCTACGTGCTACAGAACCT
ACTACCACAACCCTTGATCTGGTCTGA
Found at i:15675446 original size:26 final size:26
Alignment explanation
Indices: 15675410--15675462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15675400 CTGATCTGAT
15675410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15675436 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15675462 C
1 C
15675463 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15676452 original size:26 final size:26
Alignment explanation
Indices: 15676423--15676472 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15676413 CCAATCTGAT
15676423 CTTAGACTGGGAATGAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
* *
15676449 CTTAGATTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
15676473 TGGCAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:15677205 original size:158 final size:158
Alignment explanation
Indices: 15676597--15677196 Score: 582
Period size: 158 Copynumber: 3.8 Consensus size: 158
15676587 GTCCTACTGC
* * * *
15676597 CGCAACCCTCGGTCCAGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * ** * * *
15676662 AAATGAGCTTGTGGGTGCTTAGCCTATCGAAGAGGC-TGAATACGCAAGTCGA-GATCGGCCCGA
66 AAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCAT-AATACGCAAGCCGAGGATCGGCCCGA
* * *
15676725 TCACCCCCTGCATGCTGTCGA-TCTTGCTAT
130 TC-CCCTCTGCGTGCTGTCGATTC-TGCTGT
* * *
15676755 CGCAACCCTCGGTCAGGTCCTATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
15676820 AAATGAGCGTACGGGCATTGAGCC-AGTCGAAGAGGCATAATACGTAAGTCGAGGATTGACCCGA
66 AAATGAGCGTGCGGGCACTGAGCCGA-TCGAAGAGGCATAATACGCAAGCCGAGGATCGGCCCGA
* * *
15676884 TCCCCCTCTGCGTGCTATCGATCCTGCTGC
130 T-CCCCTCTGCGTGCTGTCGATTCTGCTGT
* * * * * ** *
15676914 CACAACCCTCGATTC-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCA
1 CGCAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * * *
15676977 CGAAATGGGCATGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGTCCG
64 CGAAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATACGCAAGCCGAGGATCGGCCCG
* * *
15677042 GTCCCCTCTACGTGCTGTCAATTCTGCTGT
129 ATCCCCTCTGCGTGCTGTCGATTCTGCTGT
* * * * *
15677072 CGCAACCTTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
15677137 AAACGAGCGTGCGGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAAGGATCGGC
66 AAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATACGCAAGCCGAGGATCGGC
15677197 TTGGTCCCCC
Statistics
Matches: 352, Mismatches: 80, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 220 0.62
159 126 0.36
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATACGCAAGCCGAGGATCGGCCCGAT
CCCCTCTGCGTGCTGTCGATTCTGCTGT
Found at i:15677207 original size:317 final size:317
Alignment explanation
Indices: 15676629--15677241 Score: 739
Period size: 317 Copynumber: 1.9 Consensus size: 317
15676619 TCTTAGGCTG
* * * * * * * *
15676629 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTGTGGGTGCTTAGCCTATCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGAAG
* * *
15676694 AGGCTGAATACGCAAGTCGAGATCGGCCCGATCACCCCCTGCATGCTGTCGATCTTGCTATCGCA
66 AGGCTGAATACGCAAGCCGAGATCGGCCCGATCACCCCCTACATGCTGTCAATCTTGCTATCGCA
* * *
15676759 ACCCTCGGTCAGGTCCTATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
131 ACCCTCAGTCAGGTCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
15676824 GAGCGTACGGGCATTGAGCCAGTCGAAGAGGCATAATACGTAAGTCGAGGATTGACCCGATCCCC
196 GAGCGTACGGGCACTGAGCCAGTCGAAGAGGCATAATACGCAAGCCAAGGATCGACCCGATCCCC
* * * *
15676889 CTCTGCGTGCT-ATCGATCCTGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACAT
261 CTCTGCATGCTGCT-GATCCCGCTACCACAACCCTCGATTCGACTGGGGCTTAGACAT
* * *
15676946 GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAATGGGCATGCGGGCGCTCAGCCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGAAG
* * * * * *
15677011 AGG-TAGAATGCGCAAGCCGAGGATCGGTCCGGTC-CCCTCTACGTGCTGTCAAT-TCTGCTGTC
66 AGGCT-GAATACGCAAGCCGA-GATCGGCCCGATCACCCCCTACATGCTGTCAATCT-TGCTATC
* * * * * *
15677073 GCAACCTTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGA
128 GCAACCCTCAGTCAGGTCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * ** *
15677138 AACGAGCGTGCGGGCACTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAAGGATCGGCTTGGTC
193 AACGAGCGTACGGGCACTGAGCCAGTCGAAGAGGCATAATACGCAAGCCAAGGATCGACCCGATC
*
15677203 CCCCTTTGCATGCTGCTGATCCCGCTACCACAACCCTCG
258 CCCCTCTGCATGCTGCTGATCCCGCTACCACAACCCTCG
15677242 GTCCGGCTCA
Statistics
Matches: 245, Mismatches: 47, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
316 2 0.01
317 231 0.94
318 12 0.05
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (317 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGAAG
AGGCTGAATACGCAAGCCGAGATCGGCCCGATCACCCCCTACATGCTGTCAATCTTGCTATCGCA
ACCCTCAGTCAGGTCCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTACGGGCACTGAGCCAGTCGAAGAGGCATAATACGCAAGCCAAGGATCGACCCGATCCCC
CTCTGCATGCTGCTGATCCCGCTACCACAACCCTCGATTCGACTGGGGCTTAGACAT
Found at i:15677924 original size:26 final size:26
Alignment explanation
Indices: 15677886--15677936 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15677876 GGCTTAAACT
15677886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15677912 CTTAGACAT-GGAATGAAGTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
15677937 CCATAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15678056 original size:26 final size:26
Alignment explanation
Indices: 15678020--15678072 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15678010 CTAGTCCGAT
15678020 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
15678046 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15678072 C
1 C
15678073 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15678259 original size:26 final size:26
Alignment explanation
Indices: 15678230--15678282 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15678220 CCAATCCGAT
15678230 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
15678256 CTTAGACATGTAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15678282 C
1 C
15678283 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15678559 original size:26 final size:26
Alignment explanation
Indices: 15678523--15678577 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
15678513 TTCTACGTGC
15678523 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
*
15678549 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
15678575 TGC
1 TGC
15678578 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:15678660 original size:137 final size:137
Alignment explanation
Indices: 15678414--15678739 Score: 580
Period size: 137 Copynumber: 2.4 Consensus size: 137
15678404 CTGGTCCGAT
* * * *
15678414 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGACC
15678479 CAACTGGAGTGGCATAATGCCAAGCCCGGTCCCCTTCTACGTGCTGCTTAGACTGGGAATGAACT
66 CAACTGGAGTGGCATAATGCCAAGCCCGGTCCCCTTCTACGTGCTGCTTAGACTGGGAATGAACT
15678544 CCGTATG
131 CCGTATG
15678551 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGACC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGACC
* * *
15678616 CAGCTGGAGTGGCATAATGCCAAGCTCGGTCCCCTTCTGCGTGCTGCTTAGACTGGGAATGAACT
66 CAACTGGAGTGGCATAATGCCAAGCCCGGTCCCCTTCTACGTGCTGCTTAGACTGGGAATGAACT
15678681 CCGTATG
131 CCGTATG
*
15678688 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
15678740 GCAGGCACTC
Statistics
Matches: 181, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 181 1.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.22
Consensus pattern (137 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGACC
CAACTGGAGTGGCATAATGCCAAGCCCGGTCCCCTTCTACGTGCTGCTTAGACTGGGAATGAACT
CCGTATG
Found at i:15678696 original size:26 final size:26
Alignment explanation
Indices: 15678660--15678714 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
15678650 TTCTGCGTGC
15678660 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
*
15678686 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
15678712 TGC
1 TGC
15678715 CTAAGTCAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:15679579 original size:158 final size:158
Alignment explanation
Indices: 15679076--15679641 Score: 522
Period size: 158 Copynumber: 3.6 Consensus size: 158
15679066 GCTTAGATAT
* * * * * * *
15679076 GGAATGAACTCCGTATTCCTAAGCCAACCCACGGAACGAGTGTACGGGCGCTCAATCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGTCGGCTGGAG
* ** * * *
15679141 AGGCAGAATGCGCATGCCAAGGA-CTGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCTAC
66 AGGCAGAATGCGCAAGCCTGGGATC-GGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCAC
*
15679205 AACCCTCAGTC-CGATCTGATCTTAGACTG
130 AACCCTTAGTCTCG-TCTGATCTTAGACTG
** * * * * *
15679234 GGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCATGCAGGCGCTAAG-CTGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGTC-GGCTGGA
* * * ** * *
15679298 GAGGCATAATGCGTAAG-CTGCGGATCGGTTCGGTCCTCTTCTGCGTGCTGCCGATCCCGCTGCC
65 GAGGCAGAATGCGCAAGCCTG-GGATCGGCTCGGTCC-CCCCTGCGTGCTGTCGATCCTGCTGCC
* * **
15679362 ACAACCC-TCGAT-TCGACTGGGGCTTAGACAT-
128 ACAACCCTTAG-TCTCGTCT-GATCTTAGAC-TG
* * *
15679393 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGCGCTCAGTCGGCTAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGTCGGCTGGAG
* * * *
15679458 AGGCAGAATACGCAAGCCTGGGATCAGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACA
66 AGGCAGAATGCGCAAGCCTGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
* *
15679523 ACCCTTAGTCTAGTCTGATCTTCGACTG
131 ACCCTTAGTCTCGTCTGATCTTAGACTG
* * * * * * *
15679551 GGAATGAACTCTGTATGCTTAAGTCAACCCATGAAACGAGCGTGC-GAACGCTCAGCCGACCT-G
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAG-GCGCTCAGTCG-GCTGG
*
15679614 AGAGGCA-AGATGCGCAAGCCGGGGATCG
64 AGAGGCAGA-ATGCGCAAGCCTGGGATCG
15679642 AACGGGTGGT
Statistics
Matches: 321, Mismatches: 71, Indels: 32
0.76 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 184 0.57
159 127 0.40
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAGTCGGCTGGAG
AGGCAGAATGCGCAAGCCTGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
ACCCTTAGTCTCGTCTGATCTTAGACTG
Found at i:15680752 original size:158 final size:156
Alignment explanation
Indices: 15680265--15680765 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 156
15680255 ACTTCGTATG
* * * *
15680265 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAACGTGAGGGCGCTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCACTCAGC
* * * * *
15680330 CGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCTT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATACGTGCTGTCGATCCT
* *
15680395 GCTGCCGTAACCCTCGGTCCGGTCTGTT
130 GCTGCCGCAACCCTCGGTCC-GTCTGAT
* * * * * *
15680423 CTTAGACTCAGAATGAACTTCGTATGCATAAGTCAACCCATGAAA-CGAGCGTGC-GGCAC-CGA
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGA-CGTGCGGGCACTC-A
* * * * * ** *
15680485 GCCGATCGGAGAGGCACAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCTTTGTGTGCTGTCGGT
63 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-ATACGTGCTGTCGAT
* * * *
15680550 CCCGCTGCCACAACCCTCGGTCCGGCTGGGGT
127 CCTGCTGCCGCAACCCTCGGTCCGTCT--GAT
* * *
15680582 -TTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGACGTGCGGGCACTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCACTCAGC
* * * * ** **
15680646 TGGCCGGAGAGGCAGAATGGGCAAGCCGGGGATCAGCTTGGTCCCCCATACGTGCTACCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATACGTGCTGTCGATCCT
* *
15680711 ACTACCGCAACCCTCGGTCCGATCTGAT
130 GCTGCCGCAACCCTCGGTCCG-TCTGAT
* *
15680739 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGAAT-GGAATGAACTCCGTATGC
15680766 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 59, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 161 0.59
159 52 0.19
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCACTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATACGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGTCTGAT
Found at i:15680775 original size:26 final size:26
Alignment explanation
Indices: 15680739--15680791 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680729 CCGATCTGAT
*
15680739 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15680765 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15680791 C
1 C
15680792 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15680928 original size:21 final size:21
Alignment explanation
Indices: 15680902--15680947 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
15680892 CCTATTTCTG
*
15680902 GTCCTGCTGCCGCAACCCCTA
1 GTCCTGCTACCGCAACCCCTA
*
15680923 GTCCTGCTACCGCAACCCCTG
1 GTCCTGCTACCGCAACCCCTA
15680944 GTCC
1 GTCC
15680948 GCTCTGATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.48, G:0.20, T:0.20
Consensus pattern (21 bp):
GTCCTGCTACCGCAACCCCTA
Found at i:15681507 original size:26 final size:26
Alignment explanation
Indices: 15681456--15681508 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15681446 TCAGTCCGAT
*
15681456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15681482 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
15681508 C
1 C
15681509 CCAAGTCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15682362 original size:26 final size:26
Alignment explanation
Indices: 15682333--15682385 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15682323 CCGGTCTGAT
15682333 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15682359 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15682385 C
1 C
15682386 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15683095 original size:26 final size:26
Alignment explanation
Indices: 15683057--15683109 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15683047 GGCTCAAAAT
15683057 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15683083 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15683109 C
1 C
15683110 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15683466 original size:159 final size:159
Alignment explanation
Indices: 15683082--15683520 Score: 447
Period size: 159 Copynumber: 2.8 Consensus size: 159
15683072 AACTCCGTAT
* *
15683082 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGAGTACGGGCGCTCAG
* * * * * * ***
15683147 CCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCC-CTACGTTCTGTTGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
** * *** *
15683211 CTGCTGCTGTAACCCTAGGTCCGGTCTGA
131 CCACTACCACAACCCTAGGTCCGGACTGA
* * * * * * *
15683240 TCTTAGA-ATGGGAATGAACTCTGTATG-CAATAGTCAACCCACAAAACGAGTGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTA-AGCCAACCCACAAAACGAGAGTACGGGCGCTC
* * * * *
15683303 AGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGG
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGA
* * *
15683368 TCCCATTACCACAACCCTCGGTCC-GACTGGG
129 TCCCACTACCACAACCCTAGGTCCGGACT-GA
* * * *
15683399 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCACAAAACGGGAGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGAGTACGGGCGCTCAG
* * * *
15683464 CCGACCGGAGAGGCAGAATGCGCAAGCCTGGGATCGGCCCTGTCCCCCT-TGTGTGCT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCT
15683521 GCCGTAACCC
Statistics
Matches: 225, Mismatches: 50, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
157 4 0.02
158 101 0.45
159 116 0.52
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGAGTACGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTACCGATC
CCACTACCACAACCCTAGGTCCGGACTGA
Found at i:15683942 original size:26 final size:26
Alignment explanation
Indices: 15683913--15683963 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15683903 CCATCCGATC
15683913 TTAGAC-TGGGAATGAACTCCGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
15683939 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
15683964 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:15684901 original size:322 final size:318
Alignment explanation
Indices: 15684252--15685342 Score: 1136
Period size: 322 Copynumber: 3.4 Consensus size: 318
15684242 AACTCCATAT
* ** *
15684252 GCTTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGC-ACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCG-GCGCCTCA
* * * * * * *
15684316 GCCGGA-TGGAGAGGCAGAATACGTAAGCCGGGGATCGACCC-AGTCCCTCCTACGTGCTATCGA
65 GCC-GACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGA-TCCCCCCTGCGTGCTGTCGA
** * *
15684379 TCCTACTGTTGCAACCCTCGGTCTGGT--T-CGATCTTAGACTGGGAATGAACTCTGTATGCCTA
128 TCCTACTGCCGCAACCCTCGATC-GGTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * * * * * *
15684441 AGTCAAACCACGAAATAAGTGTACGGGCGTTGAGCC-AGCC-AGAGAGGCATAATGTGCAAGCCG
192 AGTCAACCCACGAAACGAGCGTGCGGGTGATAAGCCGA-CCGA-AGAGGCATAATGCGCAAGCCG
* * * * * *
15684504 GGGATGGGCTCGGTCTCCCTCTACCTGCTGCCGATCCCGCTGCCACAACCCTCAGTCTGGCTGGG
255 GGGATCGACTCGGTC-CCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGG
*
15684569 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCTTGCAGGCGCCT-A
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCGCCTCA
* * * *
15684633 GCCGACCGAAAAGGCAGAATACGCAAGTCGAGGATCGACCCGATCCCCCCTGCATGGTGTCGATC
65 GCCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* * *
15684698 CTACTGCCGTAACCCTCAGATCGGTACGATCCGATCTTAGACTAGGAATGAACTCCGTATGCGTA
130 CTACTGCCGCAACCCTC-GATCGGT--GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * **
15684763 AGTCAACCCATGAAACGAGCGTGCGGGTGCTAAGCCGACCGAAGGGGCATAATGCGCAAGCCGAC
192 AGTCAACCCACGAAACGAGCGTGCGGGTGATAAGCCGACCGAAGAGGCATAATGCGCAAGCCGGG
* * ** *
15684828 GATCGACCCGGTTCCCCTCTGCATGCTGCTGGTCCCATTGCCACAACCCTCGGTCCGGCTGGG
257 GATCGACTCGG-TCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGG
* *
15684891 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CAGGCGTGCGG-GCACTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGCGC-CTC
* * * * * * * *
15684954 AGTCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCCCTGCGTGCTGTCGAT
64 AGCCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
* * * * *
15685019 CCTGCTGTCGCAACCCTCGATC--TGATCCGATCCTAGATTGGGAATGAACTTCGTATGCCTAAG
129 CCTACTGCCGCAACCCTCGATCGGTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** *
15685082 TCAACCCACCAAACGAGCGTGCGGGTGATCAA-TTGGCCTG-AGAGGCATAATGCGCAAGCCGGG
194 TCAACCCACGAAACGAGCGTGCGGGTGAT-AAGCCGACC-GAAGAGGCATAATGCGCAAGCCGGG
* * * * *
15685145 GATC-AGCTCGATCCCCGCTGCGTGCTGCCGGCCCCGCTGCCACAACCTTCGGTCTGGCTGGG
257 GATCGA-CTCGGTCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGG
* * * *
15685207 GCTTAGAAATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGG-GTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCG-CCTCA
* * * * * * * *
15685271 GCCCACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCTGCTTGCTGTAGATC
65 GCCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
*
15685336 CTGCTGC
130 CTACTGC
15685343 TTGTCCTACC
Statistics
Matches: 647, Mismatches: 106, Indels: 43
0.81 0.13 0.05
Matches are distributed among these distances:
316 162 0.25
317 212 0.33
318 10 0.02
319 1 0.00
320 2 0.00
321 10 0.02
322 246 0.38
323 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCGCCTCAG
CCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TACTGCCGCAACCCTCGATCGGTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGTGATAAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATC
GACTCGGTCCCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGG
Found at i:15685102 original size:158 final size:157
Alignment explanation
Indices: 15684252--15685342 Score: 732
Period size: 158 Copynumber: 6.9 Consensus size: 157
15684242 AACTCCATAT
* * *
15684252 GCTTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCACTCAG
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * ** * *
15684317 CCGGA-TGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCAG-TCCCTCCTACGTGCTATCGAT
65 CC-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTTCCC-CCTGCGTGCTGTCGAT
* *** * *
15684380 CCTACTGTTGCAACCCTCGGTCTGGTTCGA
128 CCTGCTGCCACAACCCTCGATCTGGCTCGA
* * * * * * * * ** *
15684410 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAACCACGAAATAAGTGTACGGGCGTTGAG
1 GCTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * ** * * * *
15684475 CC-AGCCAGAGAGGCATAATGTGCAAGCCGGGGAT-GGGCTCGGTCTCCCTCTACCTGCTGCCGA
65 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCT-GGT-TCCCCCTGCGTGCTGTCGA
* * *
15684538 TCCCGCTGCCACAACCCTC-AGTCTGGCTGGG
127 TCCTGCTGCCACAACCCTCGA-TCTGGCTCGA
* *
15684569 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCTTGCAGGCGC-CT-
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GG-GCACTC
* * * * * * * * * *
15684632 AGCCGACCGAAAAGGCAGAATACGCAAGTCGAGGATCGACCCGATCCCCCCTGCATGGTGTCGAT
63 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCCCTGCGTGCTGTCGAT
* **
15684697 CCTACTGCCGTAACCCTCAGATC-GGTACGATCCGA
128 CCTGCTGCCACAACCCTC-GATCTGG--C--T-CGA
* * * * * * ** *
15684732 TCTTAGACTAGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAG
1 GCTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * ** * * *
15684797 CCGACCGAAGGGGCATAATGCGCAAGCCGACGATCGACCCGGTTCCCCTCTGCATGCTG-CTGGT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCC-CTGCGTGCTGTC-GAT
*** * * * *
15684861 CCCATTGCCACAACCCTCGGTCCGGCTGGG
128 CCTGCTGCCACAACCCTCGATCTGGCTCGA
* * *
15684891 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CAGGCGTGCGGGCACTCA
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCACTCA
* *
15684955 GTCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCCCTGCGTGCTGTCGATC
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCCCTGCGTGCTGTCGATC
* * *
15685020 CTGCTGTCGCAACCCTCGATCT-GATCCGA
129 CTGCTGCCACAACCCTCGATCTGGCT-CGA
* * * * * * * *
15685049 TCCTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACCAAACGAGCGTGCGGGTGA-TCA
1 GCTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-CACTCA
*** * * * * * * * **
15685113 ATTGGCCTGAGAGGCATAATGCGCAAGCCGGGGATC-AGCTCGATCCCCGCTGCGTGCTGCCGGC
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCC-CTGCGTGCTGTCGAT
* * * * *
15685177 CCCGCTGCCACAACCTTCGGTCTGGCTGGG
128 CCTGCTGCCACAACCCTCGATCTGGCTCGA
* * * **
15685207 GCTTAGAAATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
1 GCTTAG-AATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * * * *
15685272 CCCACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCTGCTTGCTGTAGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCCCTGCGTGCTGTCGATCC
15685337 TGCTGC
130 TGCTGC
15685343 TTGTCCTACC
Statistics
Matches: 708, Mismatches: 188, Indels: 74
0.73 0.19 0.08
Matches are distributed among these distances:
156 1 0.00
157 15 0.02
158 336 0.47
159 212 0.30
160 15 0.02
161 3 0.00
162 7 0.01
163 92 0.13
164 27 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTTCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCTGGCTCGA
Found at i:15685413 original size:26 final size:26
Alignment explanation
Indices: 15685375--15685427 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15685365 CCAGACCGAT
15685375 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15685401 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15685427 C
1 C
15685428 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15685759 original size:159 final size:160
Alignment explanation
Indices: 15685400--15686203 Score: 540
Period size: 159 Copynumber: 5.2 Consensus size: 160
15685390 AACTCCGTAT
* * * * *
15685400 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAACGTGCGGGCGTTGAG
* * * * ** *
15685465 CCGGCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCCT-TGGGTGCTGTCGATC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
** * * *
15685529 CTACTGCCAGAACCCTCGGTCCTG-TCCGA
131 CCGCTACCACAACCCTCGGTCCGGCTCCGA
* * * * *
15685558 TCTTAGAC-TGGGAATGAACTCTGTATGCGTAAGTCAACCCATGAAAGGAATGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAACGTGCGGGCGTTGA
* * * * * * **
15685622 GCCAGCCGAAAAGGCATAATGCGCAAGCTAGGGATTGGCCCGGTCCCCCTCTGTGTGCTACCGAT
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
* * * *
15685687 CCCGCTACCACAACCCTCGATTCGGCT-AGG
130 CCCGCTACCACAACCCTCGGTCCGGCTCCGA
*
15685717 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG--A--AA----CGGGCG-T---
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAACGTGCGGGCGTTGAG
* * * *
15685770 CC-G--G-AGAGGCAGAATGCGTAAGCCAGGGATTGACCCGATCCCTGC-CTGCGTGCTGTCGAT
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCC-CCTCTGCGTGCTGTCGAT
* * * * * *
15685830 CCTGCTATCGCAACCCGCGGT-CTGATCCGA
130 CCCGCTACCACAACCCTCGGTCCGGCTCCGA
* * * * **
15685860 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAACGTGCGGGCGTTGA
* * * * * *
15685924 GCCTA-CC-AGAGAGGCATAATGCGCAAGCCGGGGATCAGCCC-AGTCCCCTTCTACCTGCTGTC
65 GCC-AGCCGA-AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCTCTGCGTGCTGTC
* * * * *
15685986 GGTCCCGCTGCCACAATCCTCGGTCCGGCT-GGG
127 GATCCCGCTACCACAACCCTCGGTCCGGCTCCGA
* * * * *
15686019 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG-ACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GGAACGTGCGGGCGTTGA
* * * * * * * * *
15686083 GTC-GATCGGAGAGGCAGAATGCGCAACCCGGGGATCGACCCGGT-CCCC-CTGCGTGTTATCGA
65 GCCAG-CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGA
* * * * *
15686145 TCCTGCTGCCACAACCCTTGATCCGG-TCTGA
129 TCCCGCTACCACAACCCTCGGTCCGGCTCCGA
* * *
15686176 TCTTGGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15686204 TTAGACGGGG
Statistics
Matches: 497, Mismatches: 113, Indels: 73
0.73 0.17 0.11
Matches are distributed among these distances:
142 4 0.01
143 98 0.20
144 2 0.00
145 1 0.00
146 1 0.00
147 3 0.01
150 1 0.00
151 12 0.02
152 1 0.00
155 4 0.01
156 1 0.00
157 56 0.11
158 99 0.20
159 208 0.42
160 6 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAACGTGCGGGCGTTGAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
CCGCTACCACAACCCTCGGTCCGGCTCCGA
Found at i:15686067 original size:302 final size:301
Alignment explanation
Indices: 15685471--15686067 Score: 781
Period size: 302 Copynumber: 2.0 Consensus size: 301
15685461 TCAGCCGGCT
* ** * * *
15685471 GGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCCTTGGGTGCTGTCGATCCTACTGC
1 GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTGCGTGCTGTCGATCCTACTAC
* * * *
15685536 CAGAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCTGTATGCGTAAGTCAACCCATG
66 CAGAACCCGCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* ** *
15685601 AAAGGAATGTGCGGGCGTTGAGCCAGCCGAAAAGGCATAATGCGCAAGCTAGGGATTGGCCCGGT
131 AAAGGAATGTGCGGGCGTTGAGCCAGCCGAAAAGGCATAATGCGCAAGCCAGGGATCAGCCCAGT
*** * *
15685666 CCCCCTCTGTGTGCTACCGATCCCGCTACCACAACCCTCGATTCGGCTAGGGCTTAGACATGGAA
196 CCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACAAGGAA
*
15685731 TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTCC
261 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTCC
* * *
15685772 GGAGAGGCAGAATGCGTAAGCCAGGGATTGACCCGATCCCTGCC-TGCGTGCTGTCGATCCTGCT
1 GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC--CCTTGCGTGCTGTCGATCCTACT
*
15685836 ATC-GCAACCCGCGGT-CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
64 ACCAG-AACCCGCGGTCCTG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
15685899 CACGAAATGAGTGTGCGGGCGTTGAGCCTA-CC-AGAGAGGCATAATGCGCAAGCCGGGGATCAG
127 CACGAAAGGAATGTGCGGGCGTTGAGCC-AGCCGA-AAAGGCATAATGCGCAAGCCAGGGATCAG
* ** * * * * *
15685962 CCCAGTCCCCTTCTACCTGCTGTCGGTCCCGCTGCCACAATCCTCGGTCCGGCTGGGGCTTAGAC
190 CCCAGTCCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGAC
15686027 AAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
255 AAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
15686068 ACGTGCGGGC
Statistics
Matches: 254, Mismatches: 36, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
301 39 0.15
302 212 0.83
303 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (301 bp):
GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTGCGTGCTGTCGATCCTACTAC
CAGAACCCGCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAAGGAATGTGCGGGCGTTGAGCCAGCCGAAAAGGCATAATGCGCAAGCCAGGGATCAGCCCAGT
CCCCCTCTACCTGCTACCGATCCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACAAGGAA
TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTCC
Found at i:15687084 original size:159 final size:159
Alignment explanation
Indices: 15686787--15687127 Score: 454
Period size: 159 Copynumber: 2.1 Consensus size: 159
15686777 ACGAGCGTGC
*
15686787 GGGAGTTCATTCCATCTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACTGACAGCACG
1 GGGAGTTCATTCCATCTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACAGACAGCACG
* * ** * *
15686852 CAAAGGGGGACCGAGCTGATCGTCGGCTTGGGCATTATGCCTCTCCGACCGACTGAGTGCCCCCA
66 CAAAGGGGGACCGAGATGATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTAAGCGCCCCCA
* *
15686917 CGCCCGTTTCGTGGGTTTGCTTAGGCATA
131 CGCCCGTTTCATGGGTTGGCTTAGGCATA
*
15686946 GGGAGTTCATTCCATCTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCAG-CAGCAC
1 GGGAGTTCATTCCATCTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGA-CAGACAGCAC
* * **
15687010 GCAGAA-GGGGACC-AGGATGATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGTTAAGCGCCC
65 GCA-AAGGGGGACCGA-GATGATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTAAGCGCCC
** *
15687073 GTACGCTCGTTTCATGGGTTGGCTTAGGCATA
128 CCACGCCCGTTTCATGGGTTGGCTTAGGCATA
* * *
15687105 CGAAGTTCATTCCATGTCTAAGC
1 GGGAGTTCATTCCATCTCTAAGC
15687128 ATACGGAGTT
Statistics
Matches: 159, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
158 1 0.01
159 154 0.97
160 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GGGAGTTCATTCCATCTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACAGACAGCACG
CAAAGGGGGACCGAGATGATCCTCGGCTTACGCATTATGCCTCTCCGACCGACTAAGCGCCCCCA
CGCCCGTTTCATGGGTTGGCTTAGGCATA
Found at i:15687130 original size:26 final size:26
Alignment explanation
Indices: 15687100--15687152 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15687090 GTTGGCTTAG
15687100 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15687126 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15687152 G
1 G
15687153 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15687339 original size:26 final size:26
Alignment explanation
Indices: 15687309--15687361 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15687299 GTTGACTTAG
15687309 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15687335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15687361 G
1 G
15687362 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15687683 original size:26 final size:26
Alignment explanation
Indices: 15687647--15687698 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15687637 TTGGCTTAGA
* *
15687647 CATACAGAGTTCATTCCATGTTTAAG
1 CATACAGAGTTCATTCAATGTGTAAG
*
15687673 CATACGGAGTTCATTCAATGTGTAAG
1 CATACAGAGTTCATTCAATGTGTAAG
15687699 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACAGAGTTCATTCAATGTGTAAG
Found at i:15687929 original size:547 final size:546
Alignment explanation
Indices: 15686891--15688250 Score: 1533
Period size: 547 Copynumber: 2.5 Consensus size: 546
15686881 GGGCATTATG
* * * *
15686891 CCTCTCCGACCGACTGAGTGCCCCCACGCCCGTTTCGTGGGTTTGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * * * *
15686956 TCCATCTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACC-AGCAGCACGCAGAA-GGG
66 TCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGCA-AAGGGG
* * * * * * *
15687019 GACCAGGAT-GATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGTTAAGCGCCCGTACGCTCGT
129 GACC-GGGTCGATCCT-GGCTTATGCATTCT-ACTCTTCGGCCGGCTGAGCGCCCGCACGCTCGT
* *
15687083 TTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
191 TTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CAAGT
* * * * *
15687148 CTAAGATAGGACCGGACCCAAGGCTACGGCAGTAGGACCAACAACATGATCTGCATCACGAAAGG
254 CTAAGATAGGACCGGACCCAAGGCTACAGAAGCAGGACCAACAACAGGATCTGCAGCACGAAAGG
* * * * *
15687213 GGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCTGACCTCTCCGGTCGGCTGAGC
319 GGGATCAGGCCGATCCCTGACTTACACATTCTGCCTCTCCGACCGACCTCTCCGGTCGGCTGAGC
** * *
15687278 AGTCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGG
384 ACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGA
* * *
15687343 AGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCGGCAGTAGGATCGACAGCA-C-GT
449 AGTTCACTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAGCAGTAGGATCGACAGCACCAGG
*
15687406 A-GACC-GGACCGATCCCC-AGCTTGCTCATTCTA
514 AGGACCAGG-CCGATCCCCGA-CTTGCGCATTCTA
* * *
15687438 CCTCTCCGACCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * *
15687503 TCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGTAGCGGGACCGACAACATGCAAAGGGGGA
66 TCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGA
* * * *
15687568 CCGGGTCGATCCTGGCTTATGCATTCTACTTCTTCGGTCGGCTGAGCACCTGCACGTTCGTTTCG
131 CCGGGTCGATCCTGGCTTATGCATTCTAC-TCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
15687633 TGGGTTGGCTTAGACATACAGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCAATGTGTAA
195 TGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCAA-GTCTAA
* * ** * * * * ** * *
15687698 GATCGGATCGGACTGAGGGTTGCAGAAGCAGGACTAGTAGCAGGATC-GACAGCACGTAAGGGGG
258 GATAGGACCGGACCCAAGGCTACAGAAGCAGGACCAACAACAGGATCTG-CAGCACG-AAAGGGG
* ** * * *
15687762 GATCAGGCTGAT-CCTCGACTTATGCATTCTGCCTCTCTGACCGGCCTCTTCGGTCAGG-TGAGC
321 GATCAGGCCGATCCCT-GACTTACACATTCTGCCTCTCCGACCGACCTCTCCGGTC-GGCTGAGC
* *
15687825 ACCCGAACGCTCGTTTGATGGGTTGACTTCGGCATACGGAGTTCAT-CCTCAGTCTAAGCATACG
384 ACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCT-AGTCTAAGCATACG
** * *** *
15687889 AAGTTTGCTCCCAGTCTAAGATCGAACCGGATTGAGGGTTGCAGCAGTAGGATCGGCAGCACGCA
448 AAGTTCACTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAGCAGTAGGATCGACAGCAC-CA
* *
15687954 GGAGGGACCAGGCTGATCCTCGACTTGCGCATTCTA
512 GGA-GGACCAGGCCGATCCCCGACTTGCGCATTCTA
**
15687990 CCTCTCCGACCGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * * ** * * *
15688055 TCCAAGTCTAAGACCCAACTGGATCGAGGGTTGTGCCAATGGGACAG-CAGCACGTAGAGGGGGA
66 TCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGA
* *** * * *
15688119 TCGGGTCGATCCCCAACTTGAT-CATTCGACTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTC
131 CCGGGTCGAT-CCTGGCTT-ATGCATTCTACTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
15688183 GTGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTA
194 GTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CAAGTCTA
15688248 AGA
257 AGA
15688251 GTTTTAGCCA
Statistics
Matches: 680, Mismatches: 112, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
545 4 0.01
546 144 0.21
547 276 0.41
548 3 0.00
549 1 0.00
550 2 0.00
551 108 0.16
552 137 0.20
553 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (546 bp):
CCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGA
CCGGGTCGATCCTGGCTTATGCATTCTACTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCAAGTCTAAGAT
AGGACCGGACCCAAGGCTACAGAAGCAGGACCAACAACAGGATCTGCAGCACGAAAGGGGGATCA
GGCCGATCCCTGACTTACACATTCTGCCTCTCCGACCGACCTCTCCGGTCGGCTGAGCACCCGAA
CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCAC
TCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAGCAGTAGGATCGACAGCACCAGGAGGACCA
GGCCGATCCCCGACTTGCGCATTCTA
Found at i:15688234 original size:26 final size:26
Alignment explanation
Indices: 15688197--15688249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15688187 GTTCGCTTAG
*
15688197 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15688223 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15688249 G
1 G
15688250 AGTTTTAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15688928 original size:26 final size:26
Alignment explanation
Indices: 15688898--15688950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15688888 GTTGACTTAG
*
15688898 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15688924 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15688950 G
1 G
15688951 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15689438 original size:26 final size:26
Alignment explanation
Indices: 15689402--15689452 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15689392 TGGCTTAGGT
*
15689402 ATACGGAGTTCA-TTCCATGTCTAAGC
1 ATACGGAGTTCAGTACCA-GTCTAAGC
*
15689428 ATACTGAGTTCAGTACCAGTCTAAG
1 ATACGGAGTTCAGTACCAGTCTAAG
15689453 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCAGTACCAGTCTAAGC
Found at i:15690591 original size:26 final size:26
Alignment explanation
Indices: 15690562--15690614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15690552 GTTGACTTAG
* *
15690562 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
*
15690588 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
15690614 G
1 G
15690615 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:15691643 original size:26 final size:26
Alignment explanation
Indices: 15691614--15691664 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15691604 TTGACTTAGG
*
15691614 CATACGGAGTTCA-TCCCTAGTCTAAA
1 CATACAGAGTTCATTCCC-AGTCTAAA
15691640 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
15691665 GATTAGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:15691992 original size:26 final size:26
Alignment explanation
Indices: 15691956--15692008 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15691946 GTTGGCTTAG
15691956 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
15691982 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
15692008 G
1 G
15692009 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:15692719 original size:26 final size:26
Alignment explanation
Indices: 15692690--15692742 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15692680 GTTGACTTGG
15692690 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15692716 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15692742 G
1 G
15692743 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15693060 original size:26 final size:26
Alignment explanation
Indices: 15693031--15693083 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693021 GTTGGCTTAG
15693031 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15693057 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15693083 G
1 G
15693084 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15693786 original size:26 final size:26
Alignment explanation
Indices: 15693755--15693807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693745 GTTGACTTAG
15693755 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15693781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15693807 G
1 G
15693808 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15694395 original size:26 final size:26
Alignment explanation
Indices: 15694317--15694395 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15694307 GTTGACTTAG
*
15694317 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15694343 CCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15694369 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
15694395 G
1 G
15694396 ATCAAACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:15694692 original size:26 final size:26
Alignment explanation
Indices: 15694662--15694714 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15694652 GTTGGCTTAG
15694662 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
15694688 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15694714 G
1 G
15694715 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15694907 original size:26 final size:26
Alignment explanation
Indices: 15694871--15694923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15694861 GTTGACTTAG
15694871 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15694897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15694923 G
1 G
15694924 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15695250 original size:26 final size:26
Alignment explanation
Indices: 15695214--15695266 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15695204 GTTGGCTTAG
*
15695214 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTTCATTCCTA-GTCTAA
15695240 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
15695266 G
1 G
15695267 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:15696266 original size:159 final size:158
Alignment explanation
Indices: 15695986--15696283 Score: 382
Period size: 159 Copynumber: 1.9 Consensus size: 158
15695976 ATCGGACTGG
* * * ** *
15695986 ACCGAGGGTTGTGGCAGCAGGATTGATAGCACGCAGGGGGTACCGGGCCGATCCTTGGCTTGCAC
1 ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTACAC
* * * * * * **
15696051 ATTCTACCTCTTCGGTCGGCTGAGCGCTCTCACGCCCATTTCATGGGTTAGCTTAGGCATAGGGA
66 ATTATACCTCTCCGATCGGCTCAGCGCCCACACGCCCATTTCATGGGTTAGCTTAGGCATACAGA
15696116 GTTCATTCCATGTCTAAGCCCCAGTTGA
131 GTTCATTCCATGTCTAAGCCCCAGTTGA
* * * *
15696144 ACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTACG
1 ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTACA
* * *
15696209 CATTATGCCTCTCCGATCGGCTCAGCGCCCACACGCTCATTTCGTGGGTT-GACTTAGGCATACA
65 CATTATACCTCTCCGATCGGCTCAGCGCCCACACGCCCATTTCATGGGTTAG-CTTAGGCATACA
15696273 GAGTTCATTCC
129 GAGTTCATTCC
15696284 CAGTAGCAAG
Statistics
Matches: 117, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 34 0.29
159 83 0.71
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTACAC
ATTATACCTCTCCGATCGGCTCAGCGCCCACACGCCCATTTCATGGGTTAGCTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAGTTGA
Found at i:15696772 original size:26 final size:26
Alignment explanation
Indices: 15696735--15696787 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15696725 GTTGGCTTAG
15696735 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15696761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15696787 G
1 G
15696788 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15697129 original size:26 final size:26
Alignment explanation
Indices: 15697099--15697166 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
15697089 GGCATAGGAA
*
15697099 TTCATTCCATGTCTAAGCATATAGAG
1 TTCATTCCATGTCTAAGCATACAGAG
*
15697125 TTCATTCCATGTCTAAGCATACGGAG
1 TTCATTCCATGTCTAAGCATACAGAG
15697151 TTCATTCCATGTCTAA
1 TTCATTCCATGTCTAA
15697167 AAGTTTAAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (26 bp):
TTCATTCCATGTCTAAGCATACAGAG
Found at i:15697877 original size:26 final size:26
Alignment explanation
Indices: 15697848--15697897 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15697838 GTTGACTTAG
*
15697848 GCATACAGATTTTATCCCCAGTCTAA
1 GCATACAGAGTTTATCCCCAGTCTAA
*
15697874 GCATACAGAGTTTATTCCCAGTCT
1 GCATACAGAGTTTATCCCCAGTCT
15697898 CACATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTTATCCCCAGTCTAA
Found at i:15698468 original size:26 final size:26
Alignment explanation
Indices: 15698439--15698489 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15698429 GTTGACTTAG
15698439 GCATACGAAGTTCA-TCTCTAGTCTAA
1 GCATACGAAGTTCATTC-CTAGTCTAA
15698465 GCATACGAAGTTCATTCCTAGTCTA
1 GCATACGAAGTTCATTCCTAGTCTA
15698490 GGATCAGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15698975 original size:26 final size:26
Alignment explanation
Indices: 15698935--15698992 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
15698925 CTTGGGTTGG
15698935 CTAAGGCATACGGAGTTCATTCC-ATGT
1 CTAA-GCATACGGAGTTCATTCCTA-GT
*
15698962 CTAAGCATATGGAGTTCATTCCTAGT
1 CTAAGCATACGGAGTTCATTCCTAGT
15698988 CTAAG
1 CTAAG
15698993 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCTAGT
Found at i:15700818 original size:26 final size:26
Alignment explanation
Indices: 15700788--15700837 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15700778 GGCTTAGGCA
*
15700788 TACGGAGTTCGTTC-CATGTCTAAGCG
1 TACGGAGTTCATTCTCA-GTCTAAGCG
15700814 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCTCAGTCTAAG
15700838 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCTCAGTCTAAGCG
Found at i:15701219 original size:26 final size:26
Alignment explanation
Indices: 15701141--15701209 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
15701131 GTTGGCTTAG
*
15701141 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15701167 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15701193 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
15701210 TCAATCTAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15701399 original size:26 final size:27
Alignment explanation
Indices: 15701358--15701412 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
15701348 TGTGGGTTGA
*
15701358 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
*
15701385 CTTA-GCATACAGAGTTCATTCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
15701411 CT
1 CT
15701413 AAGATCGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATCCCCAGT
Found at i:15701968 original size:24 final size:24
Alignment explanation
Indices: 15701940--15701994 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
15701930 TGAGGGTTAT
15701940 GATAGCAGGACTAGCAATAGGATC
1 GATAGCAGGACTAGCAATAGGATC
15701964 GATAGCAGGACTAGCAATAGGATC
1 GATAGCAGGACTAGCAATAGGATC
15701988 GATAGCA
1 GATAGCA
15701995 CGCAAGAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.29, T:0.16
Consensus pattern (24 bp):
GATAGCAGGACTAGCAATAGGATC
Found at i:15702237 original size:26 final size:26
Alignment explanation
Indices: 15702207--15702258 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15702197 GTTGACTTAG
15702207 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15702233 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15702259 TATCGAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15702968 original size:159 final size:158
Alignment explanation
Indices: 15702478--15703087 Score: 512
Period size: 159 Copynumber: 3.8 Consensus size: 158
15702468 AGTAGGACCA
* * * ** * * *
15702478 GCAGCAGGATCGACAGCACATAGGGGCAGATCGGGCCGATCTTCGGCTTGTGCATTTTGCCCCTC
1 GCAGCAGGATCGACAGCACGTAGGGG-GGATCAGGCCGATCCCCGACTTGTGCATTATGCCTCTC
* * *
15702543 TGG-CTGGCTGAGCGGCCGCACGCTCATTTTGTTGGTTGGCTTAGGCATATGGAGTTCATTCCAT
65 TGGTC-GGCTGAGCGGCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * *
15702607 GTCTAAGATTGGACCAGACTAAGGGTTGCA
129 GTCTAAGATCGGACCGGACTGAGGGTTGCG
* * * * * * * *
15702637 GTAGTAGGATCGATAGTACGCAGGGGGG-TCAGGGCCGATCCCCAACTTGTGCATTCTGTCTCTC
1 GCAGCAGGATCGACAGCACGTAGGGGGGATCA-GGCCGATCCCCGACTTGTGCATTATGCCTCTC
** * * * * * *
15702701 CAGTCGACTGAGTGGCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 TGGTCGGCTGAGCGGCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* ** * *
15702766 TCTAAG-CCCTAGCCGGACCGAGGGTTGTG
130 TCTAAGATCGGA-CCGGACTGAGGGTTGCG
* * * * *
15702795 GCAACGGGACCGACAGCACGTAGAGGGGGATCAAGCCCATCCCCGACTTGTGCATTATGCCTCTC
1 GCAGCAGGATCGACAGCACGTAG-GGGGGATCAGGCCGATCCCCGACTTGTGCATTATGCCTCTC
* * * *
15702860 TGGTCGGCTCAGCGCCCGTC-CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
65 TGGTCGGCTGAGCGGCCG-CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
* *
15702924 -GTCTAAGATCGGATCGGACTGAGGGTTGGG
128 TGTCTAAGATCGGACCGGACTGAGGGTTGCG
* * * * * * * * * * * * *
15702954 GCAGCAGGATCGACAACATGCTTGCGGGGACCGGGTCGGTCCTCGGCTTGCGTATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACG-TAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTATGCCTCTC
* * ** * *
15703019 TGGTCGGTTAAGCACCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCAT-CGGAGTTCATTCCATG
65 TGGTCGGCTGAGCGGCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
15703083 TCTAA
130 TCTAA
15703088 TCATACGGAG
Statistics
Matches: 350, Mismatches: 90, Indels: 23
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 130 0.37
159 203 0.58
160 11 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GCAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCGACTTGTGCATTATGCCTCTCT
GGTCGGCTGAGCGGCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGATCGGACCGGACTGAGGGTTGCG
Found at i:15703458 original size:26 final size:25
Alignment explanation
Indices: 15703429--15703480 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15703419 GTTGACTTAG
* *
15703429 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCC-GTCTAA
*
15703455 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACGGAGTTCATCCCCGTCTAA
15703480 G
1 G
15703481 ATCGAAACGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCGTCTAA
Found at i:15703945 original size:26 final size:26
Alignment explanation
Indices: 15703915--15703967 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15703905 ATTGGCTTAG
15703915 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15703941 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15703967 G
1 G
15703968 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Done.