Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 127 of 402
Found at i:15704981 original size:26 final size:26
Alignment explanation
Indices: 15704952--15705002 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15704942 GTTGACTTAT
* *
15704952 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
15704978 GCATACGGAGTTAATTCCCAGTCTA
1 GCATACGGAGTTAATCCCCAGTCTA
15705003 GGATCGAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:15705960 original size:26 final size:26
Alignment explanation
Indices: 15705930--15705982 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15705920 TATGGCTTAG
15705930 GCATACGGAGTTCA-TCCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15705956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15705982 G
1 G
15705983 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15706157 original size:26 final size:26
Alignment explanation
Indices: 15706128--15706180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706118 GTTGACTTAG
15706128 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
15706154 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15706180 G
1 G
15706181 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15706470 original size:159 final size:157
Alignment explanation
Indices: 15706290--15706655 Score: 407
Period size: 157 Copynumber: 2.3 Consensus size: 157
15706280 CACCCACACA
* * * * * *
15706290 CTCATTTCGTGGTTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAG
1 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAG
* * *
15706355 GGGTGTGGCAGC-GAGATCTACAGCACGTAGAGGGGGATCGAGTCGATCCCCAGCTTGCG-TATT
66 GGGTATAGCAGCAG-GATCGACAGCACGTAGA--GGGATCGAGTCGATCCCCAGCTTGCGCT-TT
*
15706418 ATGCCTCTCC-AGTCGGCTCAACGCCCGAACG
127 ATGCCTCTCCGA-ACGGCTCAACGCCCGAACG
* * ** *
15706449 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCA-GTCTAAGATCGAACCGAACCGA
1 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCGA
* * * * *
15706513 GGGTTATAGCAGCAGGATCGACAGCACGTAGAGGGATCGAGTCGGTCCCCGGCTTGTGCTTTCTG
65 GGGGTATAGCAGCAGGATCGACAGCACGTAGAGGGATCGAGTCGATCCCCAGCTTGCGCTTTATG
* * * *
15706578 CCTCTCCGAACGGCTGAGCGCCTGCACG
130 CCTCTCCGAACGGCTCAACGCCCGAACG
** *
15706606 CTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15706656 ATACGGAGTT
Statistics
Matches: 172, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 3 0.02
157 88 0.51
158 2 0.01
159 75 0.44
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAG
GGGTATAGCAGCAGGATCGACAGCACGTAGAGGGATCGAGTCGATCCCCAGCTTGCGCTTTATGC
CTCTCCGAACGGCTCAACGCCCGAACG
Found at i:15706621 original size:157 final size:157
Alignment explanation
Indices: 15706154--15706654 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
15706144 CCTAGTCTAA
* *
15706154 GCATACGGAGTTCATTCC-TAGTCTAAGATCAAACC-AGATCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGA-ACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * * * * *
15706217 CACCACGCAGGGGGGACCGGGTCGATCCCTGACTTATGCATTCTGCCTCTCTGGTCGGCTGAGCA
64 CAGCACGTA-GAGGGATCGAGTCGATCCCCGGCTTGTGCTTTCTGCCTCTCCGATCGGCTGAGCG
* * * *
15706282 CCCACACACTCATTTCGTGGTTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * * * *
15706312 ACATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGGTGTGGCAGC-GAGATCTAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGAACCGAGGGTTGTGGCAGCAG-GATCGAC
* * * * *
15706376 AGCACGTAGAGGGGGATCGAGTCGATCCCCAGCTTGCG-TATTATGCCTCTCC-AGTCGGCTCAA
65 AGCACGTAGA--GGGATCGAGTCGATCCCCGGCTTGTGCT-TTCTGCCTCTCCGA-TCGGCTGAG
* *
15706439 CGCCCGAACGCTCATTTCATGGGTTGACTTAG
126 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * *
15706471 GCATACGGAGTTTATTCCCA-GTCTAAGATCGAACCGAACCGAGGGTTATAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGAACCGAGGGTTGTGGCAGCAGGATCGAC
* *
15706535 AGCACGTAGAGGGATCGAGTCGGTCCCCGGCTTGTGCTTTCTGCCTCTCCGAACGGCTGAGCGCC
65 AGCACGTAGAGGGATCGAGTCGATCCCCGGCTTGTGCTTTCTGCCTCTCCGATCGGCTGAGCGCC
* **
15706600 TGCACGCTTGTTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
*
15706628 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15706655 CATACGGAGT
Statistics
Matches: 271, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 90 0.33
158 56 0.21
159 118 0.44
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGAACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGAGGGATCGAGTCGATCCCCGGCTTGTGCTTTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:15706658 original size:26 final size:26
Alignment explanation
Indices: 15706628--15706680 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706618 GTTGGCTTAG
15706628 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15706654 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15706680 G
1 G
15706681 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15706861 original size:26 final size:26
Alignment explanation
Indices: 15706825--15706877 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706815 ATTGACTTAG
* *
15706825 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15706851 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15706877 G
1 G
15706878 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15707153 original size:26 final size:26
Alignment explanation
Indices: 15707116--15707168 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15707106 GTTGGCTTAG
15707116 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15707142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15707168 G
1 G
15707169 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15708320 original size:159 final size:159
Alignment explanation
Indices: 15708031--15708326 Score: 339
Period size: 159 Copynumber: 1.9 Consensus size: 159
15708021 ACCAAGACCA
* ** * *
15708031 GTAGCAGGATCGACAGCACGCAGGGGGGGATCGGGCTGATCCTCGGCTTACGCATTATGCCTCTC
1 GTAGCAGGATCGACAGCACACAGAAGGGGATCGGGCAGATCCCCGGCTTACGCATTATGCCTCTC
* * **
15708096 CAGTCGGCTCAGCGCCCAAATGCTCGTTTCATGGATTGACTTCAGCATACGGAGTTCATTCCCAG
66 CAGCCGGCTCAGCGCCCAAATGCTCGTTTCATGGATTGACTTCAGCATACGGAGCTCAACCCCAG
*
15708161 TGTAAGATCCGATCGGATCGAGGGTTGCG
131 TCTAAGATCCGATCGGATCGAGGGTTGCG
* * *
15708190 GTAGCAGGATCGATAGCACACAGAAGGGGATCGGGTCAG-TCCCCGGCTTGCGCATTCA-GCCTT
1 GTAGCAGGATCGACAGCACACAGAAGGGGATCGGG-CAGATCCCCGGCTTACGCATT-ATGCCTC
** * * * * * *
15708253 TCTGGCCGGCTGAGCGCCCGCACT-CTCGTTTCGTGGGTTGGCTT-AGGCATACGGAGCTCAACC
64 TCCAGCCGGCTCAGCGCCC-AAATGCTCGTTTCATGGATTGACTTCA-GCATACGGAGCTCAACC
15708316 CCAGTCTAAGA
127 CCAGTCTAAGA
15708327 ATACCGAGTT
Statistics
Matches: 112, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
158 1 0.01
159 106 0.95
160 5 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
GTAGCAGGATCGACAGCACACAGAAGGGGATCGGGCAGATCCCCGGCTTACGCATTATGCCTCTC
CAGCCGGCTCAGCGCCCAAATGCTCGTTTCATGGATTGACTTCAGCATACGGAGCTCAACCCCAG
TCTAAGATCCGATCGGATCGAGGGTTGCG
Found at i:15709208 original size:26 final size:26
Alignment explanation
Indices: 15709168--15709220 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15709158 ATTGACTTAG
*
15709168 GCATACGTAGCTCATTTCC-AGTCTAA
1 GCATACGGAGCTCA-TTCCTAGTCTAA
*
15709194 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
15709220 G
1 G
15709221 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:15709903 original size:196 final size:196
Alignment explanation
Indices: 15709561--15709936 Score: 459
Period size: 196 Copynumber: 1.9 Consensus size: 196
15709551 AGGGTTGCTG
* * * * *** *
15709561 TAGCAGGATCGATAGCACACAGGGGGGATTGGGCCGGTCCCCGACTTTTGCATTCTACCTCTCCA
1 TAGCAGGATCGATAGCACACAGAGGGGATCGGACCGATCCCCGACTTACACATTCAACCTCTCCA
* * * * **
15709626 GCCGACTGAGTGCCCACACGCTTGTATCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTC
66 GCCGACTGAGCGCCCACACGCTCGTATCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* ** *
15709691 TAAGTATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAAGGTTACGACAGTAGGACC
131 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGAATCGAAGGTTACGACAGTAGGACC
15709755 AA
195 AA
* ** * *
15709757 TAGCAGGATCGGTAGCACGTAGAGGGGATCGGACTGATCCCCGACTTACACATTCAACCTCTCCG
1 TAGCAGGATCGATAGCACACAGAGGGGATCGGACCGATCCCCGACTTACACATTCAACCTCTCCA
* * *
15709822 GCC-AGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
66 GCCGA-CTGAGCGCCCACACGCTCGTATCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * *
15709886 CTAAGCATACAGAGTTCATTCCTAGTTTAAGATCAGACCGAATCGAGGGTT
130 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTT
15709937 GCGATAGCAG
Statistics
Matches: 149, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
195 1 0.01
196 147 0.99
197 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (196 bp):
TAGCAGGATCGATAGCACACAGAGGGGATCGGACCGATCCCCGACTTACACATTCAACCTCTCCA
GCCGACTGAGCGCCCACACGCTCGTATCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTTACGACAGTAGGACCA
A
Found at i:15711245 original size:26 final size:26
Alignment explanation
Indices: 15711215--15711267 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15711205 GTTGACTTAG
15711215 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15711241 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15711267 G
1 G
15711268 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15712492 original size:26 final size:26
Alignment explanation
Indices: 15712463--15712515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15712453 GTTTACGTAG
15712463 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
* * *
15712489 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
15712515 G
1 G
15712516 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:15712840 original size:197 final size:195
Alignment explanation
Indices: 15712413--15712976 Score: 610
Period size: 197 Copynumber: 2.9 Consensus size: 195
15712403 CTGCATCCTG
* * * * * * * *
15712413 CCTCTCTGGTCGGCTGAGCACCCGTACGGTCGTTTCGTGGGTTTACGTAGGCATACGAAGTTCAT
1 CCTCTCTGGCCGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCAT
* * * * *
15712478 CCCTAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAG
65 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAG
** * * *
15712543 CAGGATCGGTAGAACGCAAGGGGGATTGGG-TCGATCCCCGACGTGCGTATTCTACCTCTCCGAC
130 CAGGATCGACAGCACGC-AGGGGGATCGGGCT-GATCCCCGACGTGCGCATTCTACCTCTCCGAC
15712607 CGA
193 CGA
* * *
15712610 CCTCTCTGGCCGGCTAAGTGCCTGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCTCTGGCCGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCAT
* * * ***
15712675 CCCCAGTCTAAGCATGTGGAGTTCATTCCCAGTCTAAGATCGAATCGGACAGAGGGTTGTAATAG
65 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAG
* * * ** * *
15712740 CAGGATCGACAGCACGCAGGAGGGATCGGGCTGATCCCTGACTTGCGCATTTTGTCTTTCCGATC
130 CAGGATCGACAGCACGCAGG-GGGATCGGGCTGATCCCCGACGTGCGCATTCTACCTCTCCGACC
*
15712805 GG
194 GA
* * * *
15712807 CCTCT-TCGGTCGGCTGAGCGCTTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
1 CCTCTCT-GGCCGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCA
* * * **
15712871 TACCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTGCGGTA
64 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTA
* * * *
15712936 GCAGGATTGACAACATGTAGGGGGGATCGGGCTGATCCCCG
129 GCAGGATCGACAGCACGCA-GGGGGATCGGGCTGATCCCCG
15712977 GCTTGCACAT
Statistics
Matches: 303, Mismatches: 59, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
196 4 0.01
197 295 0.97
198 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (195 bp):
CCTCTCTGGCCGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATC
CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGC
AGGATCGACAGCACGCAGGGGGATCGGGCTGATCCCCGACGTGCGCATTCTACCTCTCCGACCGA
Found at i:15712893 original size:26 final size:26
Alignment explanation
Indices: 15712857--15712909 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15712847 GTTGACTTAG
*
15712857 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAATCTAA
* *
15712883 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATACCCAATCTAA
15712909 G
1 G
15712910 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAATCTAA
Found at i:15713213 original size:155 final size:154
Alignment explanation
Indices: 15713023--15713313 Score: 338
Period size: 155 Copynumber: 1.9 Consensus size: 154
15713013 CGTTCGCCCA
* * * *
15713023 TTTCGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCCAAGCCTCA-ACCGGACAGAGGGT
1 TTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCAAGTCCAAG-CTCAGACCAGACAGAGGGT
** * * *
15713087 TGTGGTAGCGGGACCG--GTAGCACTCA-GAGAGGGACCGGGTCGATCCCCGACTTGCGCATTAT
65 TGCAGTAGCAGGACCGACG-A-CACGCATG-G-GGGACCAGGTCGATCCCCGACTTGCGCATTAT
15713149 GCCTCTCCGACTCAGCGCCCATGCTGTCG
126 GCCTCTCCGACTCAGCGCCCATGCTGTCG
* * * * * *
15713178 TTTCGTGGGTTGACTTATGCATACGGAGTTGATTCCAAGTCTAAGGTCAGACCAGACCGAGGGTT
1 TTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCAAGTCCAAGCTCAGACCAGACAGAGGGTT
* * * *
15713243 GCAGTAGCAGGATCGACGACACGCATGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTT
66 GCAGTAGCAGGACCGACGACACGCATGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTC
15713308 TCCGAC
131 TCCGAC
15713314 CGGCTGAGTG
Statistics
Matches: 113, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
154 42 0.37
155 68 0.60
156 2 0.02
157 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (154 bp):
TTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCAAGTCCAAGCTCAGACCAGACAGAGGGTT
GCAGTAGCAGGACCGACGACACGCATGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTC
TCCGACTCAGCGCCCATGCTGTCG
Found at i:15713379 original size:158 final size:155
Alignment explanation
Indices: 15712883--15713382 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 155
15712873 CCCAGTCTAA
* * * * *
15712883 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTGCGGTAGCAGGATTGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACG
* * * * * * * * *
15712948 ACATGTAGGGGGGATCGGGCTGATCCCCGGCTTGCACATTCTGCATCTCCTG-CCAGTTGGGCAC
66 ACACGCA-GGGGGACCGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCC-GACC-GCTGAGCGC
** * * *
15713012 CCGTTCGCCCATTTCGTGGGTTGGCCTAG
127 CCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * * * *
15713041 GCATAGGGAGTTCATT-CCATGTCCAAGCCTCA-ACCGGACAGAGGGTTGTGGTAGCGGGACCG-
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA
* * * *
15713103 -GTAGCACTCAGAGAGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGA---CTCAG
64 CG-A-CACGCAG-G-GGGACC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTGAG
* * *
15713164 CG-CC-CATGCTGTCGTTTCGTGGGTTGACTTAT
124 CGCCCGCACGC--TCATTTCGTGGGTTGACTTAG
* * * * *
15713196 GCATACGGAGTTGATTCCAAGTCTAAGGTCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACG
* *
15713261 ACACGCATGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGACCGGCTGAGTGCC
66 ACACGCA-GGGGGACC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCTGAGCGCC
*
15713326 CGCACGCTCATTTCGTGGGTTAACTTAG
128 CGCACGCTCATTTCGTGGGTTGACTTAG
15713354 GCATATGGAGTTCATTCCCAGTCTAAGAT
1 GCATATGGAGTTCATTCCCAGTCTAAGAT
15713383 TTTGAGCCAC
Statistics
Matches: 261, Mismatches: 60, Indels: 42
0.72 0.17 0.12
Matches are distributed among these distances:
153 2 0.01
154 43 0.16
155 69 0.26
156 4 0.02
157 6 0.02
158 96 0.37
159 34 0.13
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACG
ACACGCAGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGACTTAG
Found at i:15714081 original size:26 final size:26
Alignment explanation
Indices: 15714051--15714103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15714041 GTTGACTTAG
15714051 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15714077 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15714103 G
1 G
15714104 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15714584 original size:26 final size:26
Alignment explanation
Indices: 15714547--15714599 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15714537 GTTAGGTTAG
15714547 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCAT-TCTAA
15714573 GCATAC-GAAGTTCATTCCCATTCTAA
1 GCATACAG-AGTTCATTCCCATTCTAA
15714599 G
1 G
15714600 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:15716190 original size:26 final size:26
Alignment explanation
Indices: 15716154--15716204 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15716144 TTGACTTAGG
*
15716154 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACAGAGTTCATCCCCAGTCTAAT
*
15716180 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
15716205 GATCTAACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAT
Found at i:15716734 original size:26 final size:26
Alignment explanation
Indices: 15716704--15716756 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15716694 GTTGACTTAG
*
15716704 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
15716730 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
15716756 G
1 G
15716757 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:15717078 original size:26 final size:26
Alignment explanation
Indices: 15717048--15717100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15717038 GTTGGCTTAG
*
15717048 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15717074 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15717100 G
1 G
15717101 AGTTTGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15717813 original size:26 final size:26
Alignment explanation
Indices: 15717777--15717855 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15717767 GTTGACTTAG
15717777 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15717803 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15717829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15717855 G
1 G
15717856 ATCGGATCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15718762 original size:158 final size:156
Alignment explanation
Indices: 15718498--15719281 Score: 516
Period size: 159 Copynumber: 5.0 Consensus size: 156
15718488 GATCAAACCG
* * ** * * * *
15718498 GACTGAGGGTTACGGCAGTAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCTCAGCTTGCA
1 GACTGAGGGTTATGGCAGTAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCG
* * * * * ** *
15718563 CATTCTGCCTCTTCGA-CTGGCTAAGTGCCCACACGCCCGTTTTGTGGGTTGGCTTAGGCATAGG
66 CATTATG-CTCTTCGATC-GACTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAG
15718627 GAGTTCATTCCATGTCTAAGCCCCAGCAA
129 GAGTTCATTCCATGTCTAAGCCCCAGC-A
*
15718656 GACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCTCGGCTTGC
1 GACTGAGGGTTATGGCAGTAGGACCGACAGCACGCAG-AGGGGACCGGGCCGATCCTCGGCTTGC
* * * * * * *
15718721 GTATTATGCTCTTCGATCGATTCAGTGCTCGCACACTCGTTTCATAGGTTGACTTCA-GCATACG
65 GCATTATGCTCTTCGATCGACTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTT-AGGCATAAG
* * ** *
15718785 AACTTCATTCCCA-GTCTAAG-ATCAGACCG
129 GAGTTCATT-CCATGTCTAAGCCCCAG--CA
* * * * * *
15718814 GACAGAGGGTTGCT-GTAGTAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGC
1 GACTGAGGGTT-ATGGCAGTAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGC
* * * *
15718878 GCATTCTAC-CTCTCAGGTCGACTGAA-TGCCCGCACA-TCCGTTTCATGGGTTAGCTTAGGCAT
65 GCATTATGCTCT-TC-GATCGACT-AAGTGCCCGCACACT-CGTTTCATGGGTTGGCTTAGGCAT
* *
15718940 AAGGAGTTCATTCCATGTCTAAGCCCCAACC
126 AAGGAGTTCATTCCATGTCTAAGCCCCAGCA
* * * * ** * * *
15718971 GAACCGAGGGTTGTGGTAGTGGGACCGACAGCACTTAAAGGGGGACCGGGTCGATCC-CTGACTT
1 G-ACTGAGGGTTATGGCAGTAGGACCGACAGCACGCAGA-GGGGACCGGGCCGATCCTC-GGCTT
* * * ** * ** *
15719035 GCGCATTATGCCTTTTCGA-CCAGCTCAGTGCCCTTACGCTCGTTTCATGGGTTGATTTAGTCAT
63 GCGCATTATG-CTCTTCGATCGA-CTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCAT
* * ** * *
15719099 ACA-GAGTTCACTCCCA-GTCTAAGATCGAATCG
126 A-AGGAGTTCA-TTCCATGTCTAAG-CCCCAGCA
* * * * * * *
15719131 GA-TCGAGGGTTATGGTAGCAGGATCGACAGCACACAG-GGAAGGATCGGGCCAATCCTCGGGTT
1 GACT-GAGGGTTATGGCAGTAGGACCGACAGCACGCAGAGG--GGACCGGGCCGATCCTCGGCTT
* * * * * * * *
15719194 GCGCATTCTACCTCTTTGATCGACTGAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGCCATA
63 GCGCATTAT-GCTCTTCGATCGACTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA
*
15719259 CGGAGTTCATTCCATGTCTAAGC
127 AGGAGTTCATTCCATGTCTAAGC
15719282 ATATGGAGTT
Statistics
Matches: 481, Mismatches: 111, Indels: 68
0.73 0.17 0.10
Matches are distributed among these distances:
156 2 0.00
157 46 0.10
158 201 0.42
159 215 0.45
160 16 0.03
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GACTGAGGGTTATGGCAGTAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCG
CATTATGCTCTTCGATCGACTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAGGA
GTTCATTCCATGTCTAAGCCCCAGCA
Found at i:15719045 original size:316 final size:310
Alignment explanation
Indices: 15718459--15719281 Score: 879
Period size: 316 Copynumber: 2.6 Consensus size: 310
15718449 ATCCCCAATC
* * * * *
15718459 TCAGCATACGGAGTTAATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTACGGCAGTAGGATCG
1 TCAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTT-CTGTAGTAGGATCG
** * * * *
15718524 GTAGCACGCAGGGGGGACCGGGCCAATCCTCAGCTTGCACATTCTGCCTCT-TCGACTGGCTAAG
64 ACAGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTGCGCATTCTACCTCTGTCGACT-G--AA-
* ** * *
15718588 TGCCCACACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
125 TGCCCGCAC-CCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAC
* *
15718653 CAAGACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCTCGGCT
189 CAAGACCGAGGGTTATGGCAGTGGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCTCGACT
* * * *
15718718 TGCGTATTATG-CTCTTCGATC-GATTCAGTGCTCGCACACTCGTTTCATAGGTTGACT
254 TGCGCATTATGCCTCTTCGACCAG-CTCAGTGCCCGCACACTCGTTTCATAGGTTGA-T
*
15718775 TCAGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCTGTAGTAGGATCG
1 TCAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTT-CTGTAGTAGGATCG
*
15718840 ACAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCAGGTCGACTGAAT
64 ACAGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTGCGCATTCTACCTCT---GTCGACTGAAT
* *
15718905 GCCCGCACATCCGTTTCATGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAAC
126 GCCCGCAC-CCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC-AC
* * * ** *
15718970 CGA-ACCGAGGGTTGTGGTAGTGGGACCGACAGCACTTA-AAGGGGGACCGGGTCGATCC-CTGA
189 CAAGACCGAGGGTTATGGCAGTGGGACCGACAGCACGCAGAA-GGGGACCGGGCCGATCCTC-GA
* ** * *
15719032 CTTGCGCATTATGCCTTTTCGACCAGCTCAGTGCCCTTACGCTCGTTTCATGGGTTGAT
252 CTTGCGCATTATGCCTCTTCGACCAGCTCAGTGCCCGCACACTCGTTTCATAGGTTGAT
* * * * *
15719091 TTAGTCATAC-AGAGTTCACTCCCAGTCTAAGATC-GAATCGGATCGAGGGTTATGGTAGCAGGA
1 TCAG-CATACGA-AGTTCATTCCCAGTCTAAGATCAG-ACCGGA-CGAGGGTTCT-GTAGTAGGA
* * *
15719154 TCGACAGCACACAGGGAAGGATCGGGCCAATCCTCGGGTTGCGCATTCTACCTCTTTGATCGACT
61 TCGACAGCACGCAGGG-GGGATCGGGCCAATCCTCGGCTTGCGCATTCTACCTC--TG-TCGACT
** * * * *
15719219 GAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGC
122 GAATGCCCGCAC-CCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
15719282 ATATGGAGTT
Statistics
Matches: 430, Mismatches: 59, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
315 3 0.01
316 223 0.52
317 100 0.23
318 96 0.22
319 1 0.00
320 7 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (310 bp):
TCAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTCTGTAGTAGGATCGAC
AGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTGCGCATTCTACCTCTGTCGACTGAATGCCCG
CACCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCACCAAGACC
GAGGGTTATGGCAGTGGGACCGACAGCACGCAGAAGGGGACCGGGCCGATCCTCGACTTGCGCAT
TATGCCTCTTCGACCAGCTCAGTGCCCGCACACTCGTTTCATAGGTTGAT
Found at i:15719284 original size:26 final size:26
Alignment explanation
Indices: 15719255--15719306 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15719245 TTGGCTTAGC
15719255 CATACGGAGTTCATTC-CATGTCTAAG
1 CATACGGAGTTCATTCTCA-GTCTAAG
*
15719281 CATATGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCTCAGTCTAAG
15719307 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCTCAGTCTAAG
Found at i:15719759 original size:157 final size:158
Alignment explanation
Indices: 15719340--15719794 Score: 459
Period size: 157 Copynumber: 2.9 Consensus size: 158
15719330 GTAGTAGTAC
*
15719340 CAACAGCAGGATCGGCAGCACACAGGGGGGA-TCGAGCCGATCCCCGGTTTGCGCATTCTGCCTC
1 CAACAGCAGGATCGACAGCACACAGGGGGGACT-GAGCCGATCCCCGGTTTGCGCATTCTGCCTC
** * * * *
15719404 TCTAGCCGGCTGAATGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CC
65 TCCGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * *
15719468 ATGTCTAAGCCCCAGCTGGACCGAGGGTTG
130 A-GTCTAAGCACCAGATCGACCGAGGGTTG
*** * * * * ** * *
15719498 TGGCAGC-GAGACCGACAGCACACAGAGGGTGACCGGGCCGATCCCCGACTTGCGCATTTTACCT
1 CAACAGCAG-GATCGACAGCACACAG-GGGGGACTGAGCCGATCCCCGGTTTGCGCATTCTGCCT
* * * * * * * * *
15719562 TTTCGACCGGCTCAACGCCCGCCCGCTCGTTTTGTGGGTTGACTTAGTCATACGGAGTTCATTCC
64 CTCCGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
15719627 CAGTCTAAG-ATCAGATCGATCGAGGGTTG
129 CAGTCTAAGCACCAGATCGACCGAGGGTTG
* * * *
15719656 CAACAGCAGGATCGACAGCACGCAGGGGGGACTGAGTCGATCCTCGGTTTACGCATTCTGCCTCT
1 CAACAGCAGGATCGACAGCACACAGGGGGGACTGAGCCGATCCCCGGTTTGCGCATTCTGCCTCT
* * * * * **
15719721 CCGGCTGGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTT
66 CCGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
15719786 GTCTAAGCA
131 GTCTAAGCA
15719795 TACGGAGTTC
Statistics
Matches: 228, Mismatches: 63, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
157 87 0.38
158 52 0.23
159 86 0.38
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
CAACAGCAGGATCGACAGCACACAGGGGGGACTGAGCCGATCCCCGGTTTGCGCATTCTGCCTCT
CCGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCACCAGATCGACCGAGGGTTG
Found at i:15719802 original size:26 final size:25
Alignment explanation
Indices: 15719766--15719817 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15719756 GTTGGCTTAG
*
15719766 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
*
15719792 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
15719817 G
1 G
15719818 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:15719932 original size:183 final size:183
Alignment explanation
Indices: 15719610--15720331 Score: 509
Period size: 183 Copynumber: 4.0 Consensus size: 183
15719600 TTGACTTAGT
* *
15719610 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGATCGAGGGTTGCAACAGCAGGATCGACAGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCAACAGCAGGATCGACAGC
* ** * * * *
15719675 ACGCAGGGGGGACTGAGTCGATCCTCGGTTTACGCATTCTGCCTCTCCGGCTGGTTGAGCGCCCG
66 ACGCAGGGGGGACCGAACCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCG
* * *
15719740 TACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAG
131 CAAGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* ** *
15719793 CATACGGAGTTCATT-CCAGTCTAAGATC-GAACCGGACCGAGTGTTGTGACAGCAGGATCGGCA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACC-GACCGAGGGTTGCAACAGCAGGATCGACA
** * *
15719856 GCACGCAGGGGGGACCGAACCGATCC-CTGGCTTGTGCATTTTACCTCTCCGGCCGGCTGAGTGC
64 GCACGCAGGGGGGACCGAACCGATCCTC-GGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGC
15719920 CCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
128 CCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
** * * * * * * * *
15719976 C---CCCAG-CCGA-ACCGAGGGT-TACG-GCA-ACAGGACC----G--G---CAGCGGGATTGA
1 CATACGGAGTTC-ATTCCCA--GTCTAAGATCAGAC-CGACCGAGGGTTGCAACAGCAGGATCGA
* * * * * * * * * **
15720024 CAGCACGTAGAGGGGGACC-AGGCTGATCCCCGGCTTGCGTATTATGCCTCTCAGGTTGGCTGAG
62 CAGCACGCAG-GGGGGACCGA-ACCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAG
* * * * ** *
15720088 CGCCCGCATGCTCGTTTCATGGTTTAACTTAGGCATAC-GAAGTTCATCCCCA-GTCTAAG
125 CGCCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACAG-AGTTCAT-TCCATGTCTAAG
* * ***** *
15720147 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGAGTTGTTTTTGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCAACAGCAGGATCGACAG
**** * * ** * * *
15720212 CACGCAGGGGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTCCAGCCGGTTGAGCGCCC
65 CACGCAGGGGGGACCGAACCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCC
* * ** ** *
15720277 GCACGCCCATTTCGTGGGTTGGCTTACTCATAGGGAGTTAATTCCATGTCTAAG
130 GCAAGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
15720331 C
1 C
15720332 CATAGTCAGA
Statistics
Matches: 417, Mismatches: 87, Indels: 69
0.73 0.15 0.12
Matches are distributed among these distances:
170 20 0.05
171 86 0.21
172 4 0.01
173 3 0.01
174 7 0.02
175 7 0.02
176 5 0.01
179 7 0.02
180 8 0.02
181 4 0.01
182 19 0.05
183 147 0.35
184 83 0.20
185 17 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (183 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCAACAGCAGGATCGACAGC
ACGCAGGGGGGACCGAACCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCG
CAAGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
Found at i:15720150 original size:26 final size:26
Alignment explanation
Indices: 15720120--15720172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15720110 TTTAACTTAG
15720120 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15720146 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15720172 G
1 G
15720173 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15720366 original size:355 final size:354
Alignment explanation
Indices: 15719714--15720489 Score: 846
Period size: 355 Copynumber: 2.2 Consensus size: 354
15719704 TTACGCATTC
* * * * **
15719714 TGCCTCTCCGGCTGGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTC
1 TGCCTCTCAGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAGAGTTC
* ** * *
15719779 ATTCCTTGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAACCGGACCGAGTGTTGTGACA
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAACCGGACAGAGAGTTGTGACA
* * * * *
15719844 GCAGGATCGGCAGCACGCAGGGGGGACCGAACCGATCCCTGGCTTGTGCATTTTACCTCTCCGGC
131 GCAGGATCGACAGCACGCAGGGGGGACCGAACCGATCCCCGACTTGTGCATTCTACCTCTCCAGC
* * * *
15719909 CGGCTGAGTGCCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
196 CGGCTGAGCGCCCGCAAGCCCATTTCGTGGGTTGGCTTACGCATACAGAGTTAATTCCATGTCTA
* *
15719974 AGCCCCAGCCGAACCGAGGGTTACGGCAACAGGACCGGCAGCGGGATTGACAGCACGTAGAGGGG
261 AGCCACAGCAGAACCGAGGGTTACGGCAACAGGACCGGCAGCGGGATTGACAGCACGTAGAGGGG
15720039 GACCAGGCTGATCCCCGGCTTGCGTATTA
326 GACCAGGCTGATCCCCGGCTTGCGTATTA
* * * *
15720068 TGCCTCTCAGGTTGGCTGAGCGCCCGCATGCTCGTTTCATGGTTTAACTTAGGCATAC-GAAGTT
1 TGCCTCTCAGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAG-AGTT
*
15720132 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACAGAGAGTTGTT
65 CATCCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGA-ACCGGACAGAGAGTTGTG
*** * **** *
15720196 TTTGTAGGATCGACAGCACGCAGGGGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTCC
128 ACAGCAGGATCGACAGCACGCAGGGGGGACCGAACCGATCCCCGACTTGTGCATTCTACCTCTCC
* * * **
15720261 AGCCGGTTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTACTCATAGGGAGTTAATTCCATGT
193 AGCCGGCTGAGCGCCCGCAAGCCCATTTCGTGGGTTGGCTTACGCATACAGAGTTAATTCCATGT
* ** * * * *
15720326 CTAAGCCATAGTCAG-ACCGAGGGTTGTGG---TA-G--CGGGA-CCGG-TAG-CA-CAC--AGA
258 CTAAGCCACAG-CAGAACCGAGGGTTACGGCAACAGGACCGGCAGCGGGATTGACAGCACGTAGA
* * * * ** *
15720378 GGGGGATCGGGCTAATCCCCTGCCAGCGCATTA
322 GGGGGACCAGGCTGATCCCCGGCTTGCGTATTA
* * * * *
15720411 TGCCTCTTCA-GCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTT
1 TGCCTC-TCAGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAGAGTT
*
15720475 CATTCCCAGTCTAAG
65 CATCCCCAGTCTAAG
15720490 ATCGGACCGG
Statistics
Matches: 352, Mismatches: 64, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
343 93 0.26
344 4 0.01
345 3 0.01
346 2 0.01
347 2 0.01
348 3 0.01
349 4 0.01
351 1 0.00
352 1 0.00
353 1 0.00
354 80 0.23
355 156 0.44
356 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (354 bp):
TGCCTCTCAGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACAGAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAACCGGACAGAGAGTTGTGACA
GCAGGATCGACAGCACGCAGGGGGGACCGAACCGATCCCCGACTTGTGCATTCTACCTCTCCAGC
CGGCTGAGCGCCCGCAAGCCCATTTCGTGGGTTGGCTTACGCATACAGAGTTAATTCCATGTCTA
AGCCACAGCAGAACCGAGGGTTACGGCAACAGGACCGGCAGCGGGATTGACAGCACGTAGAGGGG
GACCAGGCTGATCCCCGGCTTGCGTATTA
Found at i:15720510 original size:159 final size:156
Alignment explanation
Indices: 15720146--15720647 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 156
15720136 CCCAGTCTAA
** * *
15720146 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACAGAGAGTTGTTTTTGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGAC-GAG-GTTGTAGTAGCAGGATCGAC
* * * * * *
15720210 AGCACGCAGGGGGGACCGGGTTGATCCCC-GACTTGTGCATTCTGCCTCTCCAGCCGGTTGAGCG
63 AGCACACAGGGGGGATCGGGATGATCCCCTG-CTAGCGCATTCTGCCTCTCCAGCCGGCTGAGCG
*
15720274 CCCGCACGCCCATTTCGTGGGTTGGCTTACT
127 CCCGCACGCTCATTTCGTGGGTTGGCTTA-T
* * * * *
15720305 -CATAGGGAGTTAATTCCATGTCTAAGCCATAGTCAGACC-GA-G-GGTTGTGGTAGCGGGACCG
1 GCATACGGAGTTCATTCCATGTCTAAG----A-TCAGACCGGACGAGGTTGTAGTAGCAGGATCG
** * * * * * *
15720366 GTAGCACACAGAGGGGGATCGGGCTAATCCCCTGCCAGCGCATTATGCCTCTTCAGCCGGCTCAG
61 ACAGCACACAG-GGGGGATCGGGATGATCCCCTGCTAGCGCATTCTGCCTCTCCAGCCGGCTGAG
* *
15720431 CGCCCGCACGCTCATTTCATGGGTTGACTTAT
125 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAT
* *
15720463 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGATGGTTGTAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGA-CGA-GGTTGTAGTAGCAGGATCGAC
* * * *
15720527 AGCATACAGGGGGGAT-TGGATCGAT-CCTTAGCTTA-CGCATTCTGCCTCTCCGGCCGGCTGAG
63 AGCACACAGGGGGGATCGGGAT-GATCCCCT-GC-TAGCGCATTCTGCCTCTCCAGCCGGCTGAG
* * *
15720589 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
125 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAT
15720621 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15720648 CATACGGAGT
Statistics
Matches: 276, Mismatches: 48, Indels: 39
0.76 0.13 0.11
Matches are distributed among these distances:
154 6 0.02
155 3 0.01
157 13 0.05
158 125 0.45
159 114 0.41
160 5 0.02
162 3 0.01
163 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACGAGGTTGTAGTAGCAGGATCGACAGC
ACACAGGGGGGATCGGGATGATCCCCTGCTAGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAT
Found at i:15720657 original size:26 final size:26
Alignment explanation
Indices: 15720621--15720673 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15720611 GTTGGCTTAG
15720621 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
15720647 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15720673 G
1 G
15720674 ATTTCAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15721380 original size:26 final size:26
Alignment explanation
Indices: 15721344--15721396 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15721334 GTTGACTTAG
*
15721344 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15721370 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15721396 G
1 G
15721397 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15727390 original size:26 final size:26
Alignment explanation
Indices: 15727354--15727406 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15727344 GTTGACTTAG
15727354 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15727380 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15727406 G
1 G
15727407 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15727599 original size:26 final size:26
Alignment explanation
Indices: 15727550--15727602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15727540 GTTGGCTTAG
* *
15727550 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15727576 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
15727602 G
1 G
15727603 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15727766 original size:26 final size:26
Alignment explanation
Indices: 15727737--15727789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15727727 GTTGACTTAG
*
15727737 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15727763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15727789 G
1 G
15727790 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15727852 original size:187 final size:186
Alignment explanation
Indices: 15727537--15727876 Score: 418
Period size: 187 Copynumber: 1.8 Consensus size: 186
15727527 ACTTGTTTCA
* * *
15727537 TGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * ** *
15727602 GATCAGACCGAACCGAGGGTTGCAACAGCAGGATCGATAGCACGTAAGGGGGATCGGGCCGATCT
66 GATCAGACCGAACCAAAGGTT-CAACAACAGGATCGACAGCACGCAAGGGGGACCAAGCCGATCC
* * *
15727667 CTGACTTGTGCATTTTGCCTCTCTAGCTGGCCTCTCCAGCTTGCGCACGTCGTTCTG
130 CCGACTTGCGCATTCTGCCTCTCTAGCTGGCCTCTCCAGCTTGCGCACGTCGTTCTG
* *
15727724 TGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTTTAAGCATACGGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTA
** *
15727788 AGATC-GAATTGGAA-CAAAGGTT-AAGGCAACAGGATCGACAGCACGCAGGGGGGACCAAGCCG
65 AGATCAG-A-CCGAACCAAAGGTTCAA--CAACAGGATCGACAGCACGCAAGGGGGACCAAGCCG
15727850 ATCCCCGACTTGCGCATTCTGCCTCTC
126 ATCCCCGACTTGCGCATTCTGCCTCTC
15727877 CGGCCGGCTG
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
185 2 0.02
186 1 0.01
187 120 0.94
188 5 0.04
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (186 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
GATCAGACCGAACCAAAGGTTCAACAACAGGATCGACAGCACGCAAGGGGGACCAAGCCGATCCC
CGACTTGCGCATTCTGCCTCTCTAGCTGGCCTCTCCAGCTTGCGCACGTCGTTCTG
Found at i:15728835 original size:26 final size:26
Alignment explanation
Indices: 15728799--15728848 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15728789 TGACTTAGGG
15728799 ATACGGAGTTCATCCCCAATCTAAGC
1 ATACGGAGTTCATCCCCAATCTAAGC
* *
15728825 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATCCCCAATCTAA
15728849 AATCAGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGC
Found at i:15729128 original size:157 final size:158
Alignment explanation
Indices: 15728967--15729321 Score: 432
Period size: 158 Copynumber: 2.3 Consensus size: 158
15728957 GCCCGTTTTG
* * **
15728967 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-TTCCCAGCCGGTC-GAGGGTTGTGG
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGATCCCA-CCGGACTGAGGGTTGCAG
** *
15729030 CAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCC-TGGCTTGCGCATTATGCCTCTCC
65 CAGCAAGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCTTGCGCATTATGCCTCT-C
* * **
15729094 GATCGGCTCAGCGCCCGCATGCTCATTTCA
129 GACCGACTCAGCGCCCGCACACTCATTTCA
* * ** *
15729124 TGGGTTGACTTAGGCAT-GCAGAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAGGGTTGCA
1 TGGGTTGGCTTAGGCATAG-GGAGTTCATT-CCATGTCTAAGATCCCACCGGACTGAGGGTTGCA
* *
15729187 GCAGCAAGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTC
64 GCAGCAAGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTC
* * * *
15729252 GGCCGACTGAGCGCCCGCACACTCGTTTCG
129 GACCGACTCAGCGCCCGCACACTCATTTCA
*
15729282 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
15729322 CATACGGAGT
Statistics
Matches: 166, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
156 1 0.01
157 38 0.23
158 107 0.64
159 20 0.12
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGATCCCACCGGACTGAGGGTTGCAGC
AGCAAGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCGA
CCGACTCAGCGCCCGCACACTCATTTCA
Found at i:15729331 original size:26 final size:26
Alignment explanation
Indices: 15729295--15729347 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15729285 GTTGGCTTAG
15729295 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15729321 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15729347 G
1 G
15729348 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15729465 original size:21 final size:21
Alignment explanation
Indices: 15729439--15729492 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
15729429 CATACGAAGG
15729439 CTTGCCACGAAAACGGGTCGT
1 CTTGCCACGAAAACGGGTCGT
15729460 CTTGCCACGAAAACGGGTCGT
1 CTTGCCACGAAAACGGGTCGT
*
15729481 CTTGCCATGAAA
1 CTTGCCACGAAA
15729493 CTTCACATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (21 bp):
CTTGCCACGAAAACGGGTCGT
Found at i:15729894 original size:26 final size:26
Alignment explanation
Indices: 15729858--15729910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15729848 GTTGACTTAG
15729858 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15729884 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15729910 G
1 G
15729911 ATGTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15730250 original size:171 final size:169
Alignment explanation
Indices: 15729918--15730250 Score: 375
Period size: 171 Copynumber: 2.0 Consensus size: 169
15729908 AAGATGTGAC
* ** ** *
15729918 CGGACCGAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCGGTAGCATGCAAGGGGAACAGGCCGA
1 CGGACCGAAGGTTGCAGCAGCAGGACCAACAGCAGGATCGACAGCACGCAAGGGGAACAGGCCGA
* * * * * * * *
15729983 TCCCCGGCTTGCGCATTCTGCCTCTCTGATCGACTGAGTGCCTGCACGCTCGTTTCGTGGATTGG
66 TCCCCGACTTGCGCATTATGCCTCTCTGACCGACTCAGTGCCCGCACGCTCATTTCATGGATTGA
15730048 CGTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGA
131 CGTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGA
** * *
15730087 CGGACCGAAGGTTGTGGCAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGGGGATCAGGCT
1 CGGACCGAAGGTTGCAGCAGCAGGACCAACAGCAGGATCGACAGCACGCA-A-GGGGAACAGGCC
* * * * *
15730152 GATCCTCGACTTGTGCATTATGCCTCT-TCGGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGT
64 GATCCCCGACTTGCGCATTATGCCTCTCT-GACCGACTCAGTGCCCGCACGCTCATTTCATGGAT
* *
15730216 TGACTTATGCATA-AGAAGTTCATTCC-TAGTCTAAG
128 TGACGTAGGCATACA-AAGTTCATTCCAT-GTCTAAG
15730251 ATCAGACCAG
Statistics
Matches: 134, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
169 42 0.31
170 4 0.03
171 88 0.66
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (169 bp):
CGGACCGAAGGTTGCAGCAGCAGGACCAACAGCAGGATCGACAGCACGCAAGGGGAACAGGCCGA
TCCCCGACTTGCGCATTATGCCTCTCTGACCGACTCAGTGCCCGCACGCTCATTTCATGGATTGA
CGTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGA
Found at i:15731415 original size:158 final size:157
Alignment explanation
Indices: 15731101--15731521 Score: 414
Period size: 158 Copynumber: 2.7 Consensus size: 157
15731091 CCCAGTCTAA
* * ** * * *
15731101 GCATATGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGTAGGATCGCAG
1 GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGCAG
* * * * *
15731166 CACGTAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCT
66 CACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGCCC
* ** * *
15731231 GTATGCCCATTTCATGGTTTGGCTTAG
131 GAACACCCATTTCATGGGTTGACTTAG
* * * *
15731258 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGCGGCAGCAGGACC-GC
* * * *
15731322 AGCATGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGTATTATGCCTCTCCAGTCGGCTCAGTGC
64 AGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGC
* * *
15731387 CCGAACACTCGTTTCGTGGGTTGACTTAG
129 CCGAACACCCATTTCATGGGTTGACTTAG
* * * * * *
15731416 GCATACGGAGTTCATTCCCA-GTGTAAGATCAGACCAGACTGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCG-C
* * ** * * *
15731480 AGCATGCAGAGGAGGATCGACCCGGTCCCCGACTTGCACATT
64 AGCACGCA-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
15731522 TTACCGCTCG
Statistics
Matches: 213, Mismatches: 45, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 51 0.24
158 134 0.63
159 28 0.13
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGCAG
CACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGCGCCC
GAACACCCATTTCATGGGTTGACTTAG
Found at i:15731579 original size:26 final size:26
Alignment explanation
Indices: 15731550--15731602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15731540 GTTGGATTAG
*
15731550 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15731576 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15731602 G
1 G
15731603 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15732120 original size:26 final size:26
Alignment explanation
Indices: 15732091--15732143 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15732081 GTTGCTTTAG
15732091 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15732117 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15732143 G
1 G
15732144 GGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15732826 original size:26 final size:26
Alignment explanation
Indices: 15732790--15732842 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15732780 GTTGACTTAG
*
15732790 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
15732816 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15732842 G
1 G
15732843 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15733836 original size:26 final size:26
Alignment explanation
Indices: 15733806--15733858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15733796 GATGACTTAG
15733806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15733832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15733858 G
1 G
15733859 ATCTGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15734196 original size:159 final size:158
Alignment explanation
Indices: 15733833--15734218 Score: 361
Period size: 159 Copynumber: 2.4 Consensus size: 158
15733823 CCAGTCTAAG
* * * *
15733833 CATACGGAGTTCATTCCCAGTCTAAGATCT-GATCGAACTGAGGGTTGCGGTAGCAGGATCGATA
1 CATACGGAGTTCATTCCCAGTCTAAGAT-TAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
15733897 GCACGTAAGGGGGACCGGGCTGATCCCTAACTTGCGCATTTTGACACTCCGATCGGCTGAGCGCC
65 GCACGCAAGAGGGACCGGGCCGATCCCTAACTTGCGCATTATGACACTCCGATCAGCTCAACGCC
* * *
15733962 CGCACGCCTGTTTCATGGGTTGGCTTAGG
130 CGAACGCCTGTTTCATGGGTTGACTTAGC
* * *** * * *
15733991 CATAGGGAGTTCATT-CCATATCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGA-CTGA
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACCGGACCGAGGGTTGCGGTAGCAGGATC-GA
* * * *
15734053 CAGCACGCAGAGAGGGACCGGGCCGAT-CCTCGACTTGCGCATTATGCCTCTCC-AGCTAGCTCA
63 CAGCACGCA-AGAGGGACCGGGCCGATCCCT-AACTTGCGCATTATGACACTCCGATC-AGCTCA
* ** * *
15734116 ATGTTCGAACGCTTGTTTCGTGGGTTGACTTAGC
125 ACGCCCGAACGCCTGTTTCATGGGTTGACTTAGC
** *
15734150 CATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
15734215 CACG
66 CACG
15734219 TAGGGGGGAT
Statistics
Matches: 176, Mismatches: 42, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.02
158 56 0.32
159 112 0.64
160 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAAGAGGGACCGGGCCGATCCCTAACTTGCGCATTATGACACTCCGATCAGCTCAACGCCC
GAACGCCTGTTTCATGGGTTGACTTAGC
Found at i:15734336 original size:26 final size:26
Alignment explanation
Indices: 15734307--15734359 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15734297 GTTGGCTTAG
15734307 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15734333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15734359 G
1 G
15734360 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15735548 original size:26 final size:26
Alignment explanation
Indices: 15735512--15735566 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
15735502 GTTGACTTAG
*
15735512 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTAATTCCT-AGTCTAA
15735538 GCATACAGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCTAGTCTAA
15735564 GCA
1 GCA
15735567 CGCAAGGGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCTAGTCTAA
Found at i:15736036 original size:158 final size:156
Alignment explanation
Indices: 15735563--15736038 Score: 383
Period size: 158 Copynumber: 3.0 Consensus size: 156
15735553 TCCTAGTCTA
* * * * * * * *
15735563 AGCACGCA-AGGGGGAC-CAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCAGCTAAGC
1 AGCACGCAGAGGGGGACTC-GGGTGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGC
* * * * *
15735626 ACCCGCACAC-CTATTTTGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCTCCAC
65 ACCCGCACGCTC-GTTTCGTGGGTT-GCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
15735690 CGGACTGAGAGTTGTGGCAGC-GGACCGAC
127 CAGACCGAGGGTTGTGGTAGCAGGACCGAC
* * * **
15735719 AGCACGCAGAGGGGGACTGGGGTGATCCTCGACTTGCACTTTATGCCTCTCCGGCCGGCTCAGTG
1 AGCACGCAGAGGGGGACTCGGGTGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCA
* * * * **
15735784 CCCGCACGCTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCCTTCC-TAGTCTAAGATCATAG
66 CCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATA-CGAGTTCATTCCAT-GTCTAAG-CCCCAG
** * *
15735848 CAGACCGAGGGTTGCAGTAGTAGGATCGAC
127 CAGACCGAGGGTTGTGGTAGCAGGACCGAC
* * ** * * * *
15735878 AGCACGTAG-GGGGGAC-CGGGTCGGTCCCC-AGCTTGTGCATTCTGCCTCTCTGGCCGGTTGAG
1 AGCACGCAGAGGGGGACTCGGGT-GATCCCCGA-CTTGCACATTATGCCTCTCCGGCCGGCTCAG
*
15735940 CACCCTCACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG
64 CACCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCCCCAG
* * *
15736005 CTAAACCAAGGGTTGTGGTAGCAAGACCGAC
127 C-AGACCGAGGGTTGTGGTAGCAGGACCGAC
15736036 AGC
1 AGC
15736039 GGGATCGACA
Statistics
Matches: 247, Mismatches: 60, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 10 0.04
157 95 0.38
158 125 0.51
159 17 0.07
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
AGCACGCAGAGGGGGACTCGGGTGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTCAGCA
CCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGCAGA
CCGAGGGTTGTGGTAGCAGGACCGAC
Found at i:15736679 original size:25 final size:25
Alignment explanation
Indices: 15736650--15736697 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
15736640 GGCTTAAGCA
15736650 TACGGAGTTCATT-CCATGTCTAACG
1 TACGGAGTTCATTCCCA-GTCTAACG
15736675 TACGGAGTTCATTCCCAGTCTAA
1 TACGGAGTTCATTCCCAGTCTAA
15736698 GATCAGACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (25 bp):
TACGGAGTTCATTCCCAGTCTAACG
Found at i:15737188 original size:26 final size:26
Alignment explanation
Indices: 15737138--15737190 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15737128 GTTGGCTTAG
*
15737138 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
15737164 GCATATGGAGTTCATTCCGA-ATCTAA
1 GCATACGGAGTTCATTCC-ATATCTAA
15737190 G
1 G
15737191 AGTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15738606 original size:26 final size:26
Alignment explanation
Indices: 15738576--15738628 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15738566 GTTGGCTTAG
15738576 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15738602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15738628 G
1 G
15738629 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15739478 original size:158 final size:158
Alignment explanation
Indices: 15739051--15739478 Score: 457
Period size: 157 Copynumber: 2.7 Consensus size: 158
15739041 GATAGCATGT
* * * * * * *
15739051 AGGGTGGACCGGGCTGATCCTCGGCTTGTGCATTTTGCCTCTTCGGCCGACTGAGCGCCTGCACG
1 AGGGGGGACTGGGTTGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACG
* * *
15739116 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTGCCAGTCGGACTGAG
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTGCCAGCCGGACTGAG
** *** *
15739181 GGTTGTGGCAGTGGGACCGACAGCACGC
131 GGTTGCAGCAACAGGACCGACAGCACAC
* * * * ** * * *
15739209 AGAGGGGACTGAGTCGAT-CCCAGCTTACGCATTATGCCTCTTTGACCGGCTCAGCGCCCGCACG
1 AGGGGGGACTGGGTTGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACG
* * * * *
15739273 TTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCATGTCTAAGATTG-GA-CCGGACTG
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG--TGCCAGCCGGACTG
** *
15739336 AGGGTTGCAGCAACAGGATTGACAGCATAC
129 AGGGTTGCAGCAACAGGACCGACAGCACAC
* * * * * *
15739366 AGGGGGGACTGGGTTGATCCCCGGCTTGTTCATTCTACCTCTCCGGCTGGCTGAGCCCCCGCACG
1 AGGGGGGACTGGGTTGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACG
*
15739431 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15739479 ACATACAGAG
Statistics
Matches: 214, Mismatches: 53, Indels: 6
0.78 0.19 0.02
Matches are distributed among these distances:
157 122 0.57
158 90 0.42
159 2 0.01
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (158 bp):
AGGGGGGACTGGGTTGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTGCCAGCCGGACTGAG
GGTTGCAGCAACAGGACCGACAGCACAC
Found at i:15741064 original size:26 final size:26
Alignment explanation
Indices: 15741028--15741080 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15741018 GTTGGCTTAG
15741028 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15741054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15741080 G
1 G
15741081 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15742065 original size:26 final size:25
Alignment explanation
Indices: 15742029--15742080 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15742019 TTTGGCTTAG
15742029 GCATACGGAGTTAATTCCATGTCTAA
1 GCATACGGAGTTAATTCCA-GTCTAA
* *
15742055 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTAATTCCAGTCTAA
15742080 G
1 G
15742081 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTAATTCCAGTCTAA
Found at i:15742258 original size:354 final size:342
Alignment explanation
Indices: 15741651--15742622 Score: 878
Period size: 354 Copynumber: 2.7 Consensus size: 342
15741641 TCCGGTCGAT
* * * *
15741651 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCAAGTCTAAGCG
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTAATCCCAAGTCTAAGCA
*
15741716 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGCA
* * * *
15741781 CGTATGAGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTAAGCACCCAC
131 CGCATGAGGGACCGAGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGGATAAGCACCCAC
* *
15741846 ACACCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
196 ACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
15741911 GAGGGTTGTGGTAACGGGACTGGCAGCACGCAGAGGGGACCGAACCGATCCCCAGCTTGCGCATT
261 GAGGGTTGTGGTAACGGGACTGGCAGCACGCAGAGGGGACCGAACCGATCCCCAGCTTGCGCATT
15741976 ATGCCTTTCCGATAGGC
326 ATGCCTTTCCGATAGGC
* * * * * *
15741993 TGAGTGCCCGCACGCTCGTTTCATGGTTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTAATCCCAAGTCTAAGCA
*
15742058 TATGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGTAGGTCCAGCAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA-GG----G-T--T--G--CAGCAGCA
* ** **
15742122 GGATCGGTAGCACGCA-GAGGGGGACCGGGTTGATCCTCGACTTGCACATTCTGCCTCTCCGGTC
119 GGATCGGTAGCACGCATGA--GGGACCGAGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACC
* ** * * *
15742186 -GATAGCGCACCCGTACGCTC-TATTCATGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCT
182 GGATA-AGCACCCACACACCCGT-TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
15742249 AAGCCCCAGCTGGACCGAGGGTTGTGGTAGCAGGACCGGTGACGGGATTGACAGCACGCAAAGGG
245 AAGCCCCAGCCGGACCGAGGGTTGTGGT---A--A-CGG-GAC-----TGGCAGCACGCAGA-GG
* ** ** * * * * *
15742314 GGACTGGGCTAATCCCCGGTTTACGCATTATGCCTCTCCAGTCGGCCTCTCCAATCA-GT
297 GGACCGAACCGATCCCCAGCTTGCGCATTATG-----CC--T-----T-TCCGAT-AGGC
* * * * ** *
15742373 TGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTTAGTCTAACCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTAATCCCAAGTCTAAGCA
** * * **
15742438 TACAAAGTTCATTCCCAGTCTAAAATCGGACCAAACCGAGGGTTGC-GACAGCAGGATCGACAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAG-CAGCAGGATCGGTAGC
* * * * ** * * * * *
15742502 ACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGTATTCTACCTCTCTGGCC-GACTGAGCGCCC
130 ACGCATGAGGGACCGAGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGGA-TAAGCACCC
* *
15742566 ACACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
194 ACACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
15742623 TAATCGGATT
Statistics
Matches: 506, Mismatches: 76, Indels: 70
0.78 0.12 0.11
Matches are distributed among these distances:
341 24 0.05
342 69 0.14
346 1 0.00
347 1 0.00
349 1 0.00
351 1 0.00
352 2 0.00
353 27 0.05
354 112 0.22
357 1 0.00
359 1 0.00
360 3 0.01
361 3 0.01
366 12 0.02
367 26 0.05
368 93 0.18
369 22 0.04
370 1 0.00
371 1 0.00
372 2 0.00
373 1 0.00
374 1 0.00
375 1 0.00
376 1 0.00
379 1 0.00
380 74 0.15
381 24 0.05
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (342 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTAATCCCAAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGCA
CGCATGAGGGACCGAGCCGATCCTCGACTTGCACATTCTGCCTCTCCGACCGGATAAGCACCCAC
ACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
GAGGGTTGTGGTAACGGGACTGGCAGCACGCAGAGGGGACCGAACCGATCCCCAGCTTGCGCATT
ATGCCTTTCCGATAGGC
Found at i:15747977 original size:162 final size:160
Alignment explanation
Indices: 15747664--15748151 Score: 416
Period size: 162 Copynumber: 3.1 Consensus size: 160
15747654 TTCATCCCCA
* * * * * * * *
15747664 GTCTAAG-ATCAGACCGGATCGAGGGTTACGACAGTAGGATTGACAGCACACAAGGGGGACCAGG
1 GTCTAAGCACCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGG
* ** * * ** *** * * *
15747728 -CCAATCCCC-GACTTGTGCATTCTGCCTATCC-GACTGACTGAGTGCCCGCACGCCCGTTTCAT
66 ACCGATCCCCAG-CTTGCACATTATGCCTCTCCAG-CCAACTGACCACCCGAACGCTCATTTCAT
* *
15747790 GGGTTGGCTTAGGCATAGGGAGTTCACTCCAT
129 GGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * * **
15747822 GTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCTGCGGGATCGGTAGCACGCAGAGGGGGACC-G
1 GTCTAAGCACCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAG-GGGGGACCAG
* * * * * * *
15747885 GGCCGATCCGCAGCTTGCATATTATTCCTCTCCGGCCAGCTCAGCACCACCCGAATGCTCATTTC
65 GACCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCAACT--G-ACCACCCGAACGCTCATTTC
* *
15747950 ATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-
127 ATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
* * *
15747984 GTCTAAG-ATCGGACTGGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGG
1 GTCTAAGCACCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGG
** * * * * *
15748048 ACCGATCCCCAGCTTGTGCATTCTGCCTCTCCAGCCAACTGAGCACCCGCACGCTCGTTTCGTGG
66 ACCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCAACTGACCACCCGAACGCTCATTTCATGG
*
15748113 GTGGGCTTAGGCATACGGAGTTCATTCCAT
131 GTTGGCTTAGGCATACGGAGTTCATTCCAT
15748143 GTCTAAGCA
1 GTCTAAGCA
15748152 TACGGAGTTC
Statistics
Matches: 255, Mismatches: 62, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
158 40 0.16
159 84 0.33
160 4 0.02
161 11 0.04
162 113 0.44
163 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (160 bp):
GTCTAAGCACCAGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGG
ACCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCAACTGACCACCCGAACGCTCATTTCATGG
GTTGGCTTAGGCATACGGAGTTCATTCCAT
Found at i:15748159 original size:26 final size:26
Alignment explanation
Indices: 15748123--15748175 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15748113 GTGGGCTTAG
15748123 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15748149 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15748175 G
1 G
15748176 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15748321 original size:195 final size:191
Alignment explanation
Indices: 15747964--15748529 Score: 613
Period size: 195 Copynumber: 3.0 Consensus size: 191
15747954 GTTGACTTAG
* * * ** * *
15747964 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGACCGACA
* * * **
15748029 -G--C-AC-GCA-G-GGGGGACCAGGACCGATCCCCAGCTTGTGCATTCTGCCTCTCCAGCCAAC
66 GGATCGACAGCACGCAGGGGACC-GGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGC
* * *
15748087 TGAGCACCCGCACGCTCGTTTCGTGGGTGGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
15748149 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGACC-G--
* * * *
15748214 ACAGGATCGACAGCACGCAGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC
63 ACAGGATCGACAGCACGCAG-GGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCC
* * * *
15748279 GGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTA
127 GGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTA
15748343 A
191 A
* * * **
15748344 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGACCGACA
* * ** * * *
15748409 GCAT-G-CAG---G--GGGGATCGGGCCGATCCTTAGCTTGTGCATTCTGCCTCTCCGACAGGCA
66 GGATCGACAGCACGCAGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCT
* * *
15748467 GAGCGCCCGCGCGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 GAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15748528 GC
1 GC
15748530 CCCAACCGGA
Statistics
Matches: 320, Mismatches: 48, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
183 3 0.01
184 90 0.28
185 55 0.17
186 1 0.00
187 1 0.00
188 3 0.01
189 1 0.00
190 3 0.01
191 2 0.01
192 6 0.02
193 3 0.01
194 2 0.01
195 141 0.44
196 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (191 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGACCGACA
GGATCGACAGCACGCAGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGCT
GAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15748354 original size:26 final size:26
Alignment explanation
Indices: 15748318--15748370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15748308 GTTGACTTAG
15748318 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15748344 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15748370 G
1 G
15748371 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15750060 original size:26 final size:26
Alignment explanation
Indices: 15750024--15750076 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15750014 GTTGGCTTAG
15750024 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
* *
15750050 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15750076 G
1 G
15750077 ATGGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15750551 original size:158 final size:159
Alignment explanation
Indices: 15750112--15750562 Score: 414
Period size: 159 Copynumber: 2.9 Consensus size: 159
15750102 AGCAAGACTA
* * * ** * * ** *
15750112 GCAGCAGGATCGACAGCACGCAG--GGGGATCGGGTCGATCCTCGGCTTACGTGTTCTACCTCTC
1 GCAGCAGGACCGACAGCACGTAGAAGGGGACCAAGCCGATCCCCGGCTTACGAATTCTAGCTCTC
* * * *
15750175 CGATTGACTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTGGGCATAGGGAGTTCATTCCATG
66 CGATTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * *
15750240 TCTAAGCTCCAGCCAGACTGAGGGTTGTG
131 TCTAAGATCCAGCCAAACCGAGGGTTATG
* * * ** * *
15750269 GCAGCTGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCGGCTTACGAATTAT-GCCTCT
1 GCAGCAGGACCGACAGCACGTAGAAGGGGACCAAGCCGATCCCCGGCTTACGAATTCTAG-CTC-
* *** * * * * ** * *
15750333 TCGGCCCG-CTCAACGCTCGCACGCTCATTTCATGGGTTTACTTAAGCATACAGAGTTCATTCCC
64 TCCGATTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CC
*
15750397 A-GTCTAAGAT-CGGACCAAACCGAGGGTTATG
128 ATGTCTAAGATCCAG-CCAAACCGAGGGTTATG
* * *
15750428 GCAGCAGGATCGATAGCACGTA-AAGGGGACCAAGCCGATCCCCGGCTTGC-ACATTCTAGCTCT
1 GCAGCAGGACCGACAGCACGTAGAAGGGGACCAAGCCGATCCCCGGCTTACGA-ATTCTAGCTCT
* *
15750491 CCGATTGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CCGATTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
15750556 GTCTAAG
130 GTCTAAG
15750563 CATACGAAGT
Statistics
Matches: 231, Mismatches: 53, Indels: 19
0.76 0.17 0.06
Matches are distributed among these distances:
157 28 0.12
158 81 0.35
159 115 0.50
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
GCAGCAGGACCGACAGCACGTAGAAGGGGACCAAGCCGATCCCCGGCTTACGAATTCTAGCTCTC
CGATTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGATCCAGCCAAACCGAGGGTTATG
Found at i:15750573 original size:26 final size:26
Alignment explanation
Indices: 15750536--15750588 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15750526 GTTGGCTTAG
*
15750536 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
15750562 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15750588 G
1 G
15750589 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15750587 original size:512 final size:514
Alignment explanation
Indices: 15749600--15750641 Score: 1414
Period size: 512 Copynumber: 2.0 Consensus size: 514
15749590 GGGTTACGGT
* * * *
15749600 AGCAAGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACACATTCTACCTCTCCGA
* *
15749665 CCGACTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 CCGACTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * *
15749730 AAGCCCCAGCCAGACCCAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGATGGGGATCGGGCCAA
131 AAGCCCCAGCCAGACCCAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAA
* * * * ** *
15749795 CCCCCCGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGTGCCCGCACGCTCATTTTATGGGTTG
196 CCCCCCGGCTTACGAATTATGCCTCTCTGACCCGCTCAACGCCCGCACGCTCATTTCATGGGTTG
* * * * * * *
15749860 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTGCGATAACAGGA
261 ACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAACAGGA
* ** * * *
15749925 TCGATAGCACGAAGGGGGAGCCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACTGGCTG
326 TCGATAGCACGAAAGGGGAGCCAAGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACTGACTG
*
15749990 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATA
391 AGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATA
* * * * *
15750055 TGGAGTTCATTCCCAGTCTAAGATGGGATTGGACCGAGGGTTGCGATAGCAAG-ACTAGC
456 CGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGATAGCAAGAAC-AGC
* ***
15750114 AGCAGGATCGACAGCACGCA-GGGGGATCGGGTCGAT-CCTCGGCTTACGTGTTCTACCTCTCCG
1 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCT-GGCTTACACATTCTACCTCTCCG
** *
15750177 ATTGACTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTC
65 ACCGACTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* ** * * *
15750242 TAAGCTCCAGCCAGACTGAGGGTTGTGGCAGCTGGACCGACAGCACGTAGAGGGGGATCGGGCCG
130 TAAGCCCCAGCCAGACCCAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCA
* * * *
15750307 A-TCCTCGGCTTACGAATTATGCCTCT-TCGGCCCGCTCAACGCTCGCACGCTCATTTCATGGGT
195 ACCCCCCGGCTTACGAATTATGCCTCTCT-GACCCGCTCAACGCCCGCACGCTCATTTCATGGGT
* * * *
15750370 TTACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTATGGCAGCAG
259 TGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAACAG
* *
15750435 GATCGATAGCACGTAAAGGGGA-CCAAGCCGATCCCCGGCTTGCACATTCTAG-CTCTCCGATTG
324 GATCGATAGCACG-AAAGGGGAGCCAAGCCGATCCCCGGCTTACACATTCT-GCCTCTCCGACTG
* *
15750498 ACTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
387 ACTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAG
* * *
15750563 CATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGAACAGC
452 CATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGATAGCAAGAACAGC
*
15750626 AACAGGATCGACAGCA
1 AGCAGGATCGACAGCA
15750642 GGATCAGTAG
Statistics
Matches: 459, Mismatches: 64, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
511 1 0.00
512 280 0.61
513 160 0.35
514 18 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (514 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACACATTCTACCTCTCCGA
CCGACTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGACCCAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAA
CCCCCCGGCTTACGAATTATGCCTCTCTGACCCGCTCAACGCCCGCACGCTCATTTCATGGGTTG
ACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAACAGGA
TCGATAGCACGAAAGGGGAGCCAAGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACTGACTG
AGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATA
CGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGATAGCAAGAACAGC
Found at i:15750975 original size:26 final size:26
Alignment explanation
Indices: 15750927--15750979 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15750917 GTTGACTTAG
*
15750927 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
* * *
15750953 GCATATGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
15750979 G
1 G
15750980 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:15751333 original size:157 final size:156
Alignment explanation
Indices: 15751001--15751757 Score: 499
Period size: 157 Copynumber: 4.8 Consensus size: 156
15750991 TGGAGGGTTG
* * * * * ** *
15751001 CGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGATTGA
1 CGACAGCACGTA-AGGGGACCGGGCCGATCCCCGGCTTGCGCATTATTCCTCTCCGGTAGGCTCA
* * * * * * **
15751066 GTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCC-ATGTCTAAGCCCC
65 GCG-CCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCTA-GTCTAAG-ATC
* * * * * *
15751130 AG-CCAGATCGA-GGTTG-TGCAACGGGAC
127 AGATCAGACCGAGGGTTGCGGCAGCAGGAT
* * *
15751157 CGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATTCCTCTCCGGTAGGCTC
1 CGACAGCACGTA-A-GGGGACCGGGCCGATCCCCGGCTTGCGCATTATTCCTCTCCGGTAGGCTC
* * **
15751222 AGCGCTCGAAGGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGATTG
64 AGCGC-CGCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
* *
15751287 GATCGGACCGAGGGTTGCGACAGCAGGAT
128 GATCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * ** * *
15751316 CGACAGCACGTAAGGGGACCGGGTCGATCCCCGGCTTACGCATT-TTGCATCTCTGACCA-TCTG
1 CGACAGCACGTAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATT-CCTCTCCG-GTAGGCTC
* ** * * * * **
15751379 AGCGCCTGCACGCCCGTTTTGTATGTTGGCTTAGGCATAAGGAGTTCATTCC-ATGTCTAGGCCC
64 AGCGCC-GCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCTA-GTCTAAG-AT
* * * * * * *
15751443 CAG-CCAGATCGAGGATTGTGGCAACGGGAC
126 CAGATCAGACCGAGGGTTGCGGCAGCAGGAT
* * * *
15751473 CGACAGCACATAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGGTTGGCTC
1 CGACAGCACGT--AAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATTCCTCTCCGGTAGGCTC
* * * *
15751538 AGCGCCCGCACGTTCATTTCGTGGGTTGAC-TAAGGCATACAGAGTTCATTCCTAGTCTAAGATC
64 AGCG-CCGCACGCTCGTTTTGTGGGTTGACTTAA-GCATACGGAGTTCATTCCTAGTCTAAGATC
** * *
15751602 AGATCAGACTAAGGGTTGCGGTAGCATGAT
127 AGATCAGACCGAGGGTTGCGGCAGCAGGAT
** * * * * * * ** * *
15751632 CGACAGCACGTAGGAGGGGACTAGGTCGGTCCTCGGCTTGCGCATTCTACCTCTCTGGCCGACTA
1 CGACAGCACGTA--AGGGGACCGGGCCGATCCCCGGCTTGCGCATTATTCCTCTCCGGTAGGCTC
* ** * * *
15751697 AGCACCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAAG
64 AGC-GCCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCTA-GTCTAAG
15751758 CATACGGGGT
Statistics
Matches: 457, Mismatches: 120, Indels: 45
0.73 0.19 0.07
Matches are distributed among these distances:
156 17 0.04
157 210 0.46
158 15 0.03
159 209 0.46
160 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
CGACAGCACGTAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATTCCTCTCCGGTAGGCTCAG
CGCCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGAT
CAGACCGAGGGTTGCGGCAGCAGGAT
Found at i:15751597 original size:316 final size:315
Alignment explanation
Indices: 15751001--15751758 Score: 984
Period size: 316 Copynumber: 2.4 Consensus size: 315
15750991 TGGAGGGTTG
* * * *
15751001 CGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGAT-TG
1 CGACAGCACGTAGAGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT-CTGACCATCTG
* * *
15751065 AGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCCCC
65 AGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
** *
15751130 AGCCAGATCGAGGTTGTGCAACGGGACCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCT
130 AGCCAGATCGAGGTTGTGCAACGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCT
* * * * * *
15751195 TGTGCATTATTCCTCTCCGGTAGGCTCAGCGCTCGAAGGCTCGTTTTGTGGGTTGACTTAAGCAT
195 TGCGCATTATGCCTCTCCGGTAGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAAGCAT
* ** * *
15751260 ACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGACAGCAGGAT
260 ACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCAGGAT
* * *
15751316 CGACAGCACGTA-AGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCATCTCTGACCATCTGA
1 CGACAGCACGTAGAGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCATCTGA
* ** *
15751380 GCGCCTGCACGCCCGTTTTGTATGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAGGCCCCA
66 GCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
*
15751445 GCCAGATCGAGGATTGTGGCAACGGGACCGACAGCACATAGAAGGGGACCGGGCCGATCCCCGGC
131 GCCAGATCGAGG-TTGT-GCAACGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGC
* * * *
15751510 TTGCGCATTATGCCTTTCCGGTTGGCTCAGCGCCCGCACGTTCATTTCGTGGGTTGAC-TAAGGC
194 TTGCGCATTATGCCTCTCCGGTAGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAA-GC
* ** *
15751574 ATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACTAAGGGTTGCGGTAGCATGAT
258 ATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCAGGAT
** * * * *
15751632 CGACAGCACGTAGGAGGGGACTAGGTCGGTCCTCGGCTTGCGCATTCTACCTCTCTGGCCGA-CT
1 CGACAGCACGTA-GAGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACC-ATCT
* * *** * *
15751696 AAGCACCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 GAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
15751759 ATACGGGGTT
Statistics
Matches: 379, Mismatches: 57, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
313 5 0.01
314 109 0.29
315 19 0.05
316 154 0.41
318 91 0.24
319 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (315 bp):
CGACAGCACGTAGAGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCATCTGA
GCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
GCCAGATCGAGGTTGTGCAACGGGACCGACAGCACACAGAAGGGGACCGGGCCGATCCCCGGCTT
GCGCATTATGCCTCTCCGGTAGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAAGCATA
CAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTGCGACAGCAGGAT
Found at i:15751636 original size:159 final size:159
Alignment explanation
Indices: 15751001--15751757 Score: 532
Period size: 159 Copynumber: 4.8 Consensus size: 159
15750991 TGGAGGGTTG
* * * * ** *
15751001 CGACAGCACGTAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGATTG
1 CGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
* * * * * * ** * **
15751065 AGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAGCCCC
66 AGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCATGTCTAAG-ATC
* * * * *
15751130 AG-CCAGA-TCGA-GGTTG-TGCAACGGGAC
130 AGATCAGACT-GAGGGTTGCGGCAGCAGGAT
* * * * * **
15751157 CGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATTCCTCTCCGGTAGGCTC
1 CGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
* * * * * *
15751222 AGCGCTCGAAGGCTCGTTTTGTGGGTTGACTTAA-GCATACGGAGTTCATTCC-TAGTCTAAGAT
66 AGCGCCCGCACGCTCATTTCGTGGGTTGAC-TAAGGCATACAGAGTTCATTCCAT-GTCTAAGAT
** * * *
15751285 TGGATCGGACCGAGGGTTGCGACAGCAGGAT
129 CAGATCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * ** *
15751316 CGACAGCACGT--AAGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCATCTCTGACCATCTG
1 CGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
* * * * ** * * * **
15751379 AGCGCCTGCACGCCCGTTTTGTATGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAGGCCC
66 AGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACA-GAGTTCATTCCATGTCTAAG-AT
* * * * * *
15751443 CAG-CCAGA-TCGAGGATTGTGGCAACGGGAC
129 CAGATCAGACT-GAGGGTTGCGGCAGCAGGAT
* * **
15751473 CGACAGCACATAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTCCGGTTGGCTC
1 CGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
*
15751538 AGCGCCCGCACGTTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCC-TAGTCTAAGATC
66 AGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCAT-GTCTAAGATC
* * *
15751602 AGATCAGACTAAGGGTTGCGGTAGCATGAT
130 AGATCAGACTGAGGGTTGCGGCAGCAGGAT
* ** * * * * * * * *
15751632 CGACAGCACGTAGGAGGGGACTAGGTCGGTCCTCGGCTTGCGCATTCTACCTCTCTGGCCGACTA
1 CGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
* * * * *
15751697 AGCACCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 AGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCATGTCTAAG
15751758 CATACGGGGT
Statistics
Matches: 456, Mismatches: 126, Indels: 35
0.74 0.20 0.06
Matches are distributed among these distances:
156 15 0.03
157 204 0.45
158 13 0.03
159 221 0.48
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTC
AGCGCCCGCACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCATGTCTAAGATCA
GATCAGACTGAGGGTTGCGGCAGCAGGAT
Found at i:15751769 original size:26 final size:26
Alignment explanation
Indices: 15751731--15751783 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15751721 GTTGGCTTAG
15751731 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15751757 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15751783 G
1 G
15751784 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15752319 original size:26 final size:26
Alignment explanation
Indices: 15752283--15752334 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15752273 GTTGGCTTAG
*
15752283 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15752309 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15752335 CAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15753033 original size:26 final size:26
Alignment explanation
Indices: 15753004--15753056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15752994 GTTAACTTAG
15753004 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15753030 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15753056 G
1 G
15753057 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15753223 original size:26 final size:26
Alignment explanation
Indices: 15753187--15753239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753177 GTTGGCTTAG
15753187 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15753213 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15753239 G
1 G
15753240 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15753946 original size:26 final size:26
Alignment explanation
Indices: 15753910--15753960 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753900 TTGACTTAGG
* *
15753910 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAATCTAAA
*
15753936 CATACAGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATCCCCAATCTAA
15753961 GATCAGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAA
Found at i:15753982 original size:905 final size:904
Alignment explanation
Indices: 15752233--15754120 Score: 2899
Period size: 905 Copynumber: 2.1 Consensus size: 904
15752223 GCACATTCTG
* * *
15752233 CCTCTCCGGCCGGCTGAGCACCCGTACG-CTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCA
1 CCTCTCCGGCCGGCTGAGCGCCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * *
15752297 TTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAACAGTTTGAGCCATGGTGCACATGATGG
65 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACAGTTTGAGCCACGGTCCACATGATGG
* *
15752362 GCTCGGGCATATGCTGGTGCTGCATTTTTTTCACCTGGGGCACCATCACCGGAGCATCATCGGAG
130 GCTCGGGCATATGCTGGTGCTGCATTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAG
* *
15752427 AGCCTAACCGACGGCATTGGGGTTTCGATGATTGGGGGGCCGGGGGGGTGTGCACACATGATGTG
195 AGCCCAACCGACGCCATTGGGGTTTCGATGATTGGGGGGCC-GGGGGGTGTGCACACATGATGTG
* * * *
15752492 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC
259 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCAC
*
15752557 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAAT
324 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCAATAAAGTGTCTGAAAT
* * *
15752622 GGGGGCACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTAGCTAAATTATTTTGT
389 GGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACATCGAGTTTTAGCTAAATTATTTTAT
15752687 GCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAA
454 GCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAA
* *
15752752 TTTTAAAAAATCTCGAAGCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCGTCTTG
519 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCATCTTG
*
15752817 CCACGAAACTTCACGTGAAGGCGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
584 CCACGAAACTTCACATGAAGGCGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15752882 TGGCATGGTAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTACG
649 TGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCACGGCTTACG
* *
15752947 CAGCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTCTGTGGGTTAACTTAGGCATACGG
714 CAGCCTGCCTCTCTGGCCGACTGAGCGTCCGCACGCTCGTTCTGTGGGTTAACTTAGGCATACGG
* ** * * * *
15753012 AGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTT
779 AGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGGGTT
* * * * *
15753077 GCGACAGCAGGATCGGCAGCTTGTAGGGGGGACAGGGCAGATCCCCGTATTACGCA-TTTA
844 GCGACAGCAGGATCGGCAGCATGCAAGGGGGACAGAGCAGATCCCCGGATTACGCATTTTA
* * * *
15753137 CCTCTCCGACCGACTGAGCGCCTGCACGCCTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * *
15753202 TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTCCACATGCTGGG
66 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACAGTTTGAGCCACGGTCCACATGATGGG
* * ** *
15753267 CTTGGGCATGTGCTGGTG-TCGCATTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGCCGGAG
131 CTCGGGCATATGCTGGTGCT-GCATTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAG
* * *
15753331 AGCCCAATCGACGCCATTGGTGGTTTCGGTGATTGGGGGGGCC-GGGGGTGTGCGCACATGATGT
195 AGCCCAACCGACGCCATTGG-GGTTTCGATGATT-GGGGGGCCGGGGGGTGTGCACACATGATGT
*
15753395 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTTAAGAACTCA
258 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCA
*
15753460 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACT-CTCAGTAGCC-ATCAAAGTGTCTGG
323 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGC-CAGTAGCCAAT-AAAGTGTCTGA
* * * *
15753523 AATGGGGACACTTTTTTCAAATGGTCACGAAATCTTCTCCACATCGAGTTTTTAGCTTAATTTTT
386 AATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACATCGAG-TTTTAGCTAAATTATT
* *
15753588 TTATGCATGCCAACGAAAATACAAGGATCACCTCTACCAAATTTGGGGACAATACTCTTTCTAAA
450 TTATGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAA
* * *
15753653 AAGATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCAT
515 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCAT
* * *
15753718 CTTGCCATGAAACTTCACATGAAGGTGTAGGGGACCATTGTATGAATTTACAAGTCATAAAAATG
580 CTTGCCACGAAACTTCACATGAAGGCGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
15753783 GCATTGGCATGGCAGAAATATGCCGATGTGCTTGAACCTACCTACCACCCGTTCGATCCACGGCT
645 GCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCACGGCT
* *
15753848 TACGCATCCTGCCTCTCTGGCCGACTGAGCGTCCGCACGCTCGTT-TCGTGGGTTGACTTAGGCA
710 TACGCAGCCTGCCTCTCTGGCCGACTGAGCGTCCGCACGCTCGTTCT-GTGGGTTAACTTAGGCA
15753912 TACGGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCAA
774 TACGGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCAA
* * * * *
15753977 GGGTTGCGACAGCAGGATCGGCCGCATGCAAGGGGGACCGAGCCGATCCCCGGCTTTCGCATTTT
839 GGGTTGCGACAGCAGGATCGGCAGCATGCAAGGGGGACAGAGCAGATCCCCGGATTACGCATTTT
*
15754042 G
904 A
* * * * *
15754043 CCTCTCCGGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
*
15754108 TCCATTTCTAAGC
66 TCCATGTCTAAGC
15754121 CCCAACCGGA
Statistics
Matches: 888, Mismatches: 87, Indels: 16
0.90 0.09 0.02
Matches are distributed among these distances:
903 4 0.00
904 367 0.41
905 438 0.49
906 79 0.09
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (904 bp):
CCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACAGTTTGAGCCACGGTCCACATGATGGG
CTCGGGCATATGCTGGTGCTGCATTTTTTTCACCCGGGGCACCATCACCGGAGCATCACCGGAGA
GCCCAACCGACGCCATTGGGGTTTCGATGATTGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCAATAAAGTGTCTGAAATGG
GGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACATCGAGTTTTAGCTAAATTATTTTATGC
ATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCC
ACGAAACTTCACATGAAGGCGTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCACGGCTTACGCA
GCCTGCCTCTCTGGCCGACTGAGCGTCCGCACGCTCGTTCTGTGGGTTAACTTAGGCATACGGAG
TTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGGGTTGC
GACAGCAGGATCGGCAGCATGCAAGGGGGACAGAGCAGATCCCCGGATTACGCATTTTA
Found at i:15754420 original size:158 final size:157
Alignment explanation
Indices: 15753936--15754436 Score: 533
Period size: 158 Copynumber: 3.2 Consensus size: 157
15753926 CCAGTCTAAA
* * * * * *
15753936 CATACAGAGTTCATTCCCA-ATCTAAGATCAGACTGGACCAAGGGTTGCGACAGCAGGATCGGCC
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
15754000 GCATGCAAGGGGGACCGAGCCGATCCCCGGCTTTCGCATTTTGCCTCTCCGGTCGGCTGAGCGCC
65 GCATGCAAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCC
* * *
15754065 CGCATGCCCGTTTCATGGGTTGGCTTAGG
129 CGCACGCTCGTTTAATGGGTTGGCTTAGG
* * ** *
15754094 CATAGGGAGTTCATTCCATTTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
1 CATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
15754158 GCACGCAAAGGGAGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
65 GCATGC-AAGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
* * ** * *
15754223 TCGTACGCTCGTTTTGTGGGTTGACTCAGG
128 CCGCACGCTCGTTTAATGGGTTGGCTTAGG
* * ***
15754253 CATATGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAATA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * *
15754317 GCATGC-AGGGGGTACAGGGCCGGTCCTCAGCTTGCTCATTCTGCCTCTCCGATCGGTTGAGCAC
65 GCATGCAAGGGGG-AC-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
15754381 CCGCACGCTCGTTTAATGGGTTGGCTTAGG
128 CCGCACGCTCGTTTAATGGGTTGGCTTAGG
*
15754411 CATACGGAGTTAATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
15754437 CATACAAAGT
Statistics
Matches: 280, Mismatches: 55, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
157 12 0.04
158 138 0.49
159 127 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CATGCAAGGGGGACGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTAATGGGTTGGCTTAGG
Found at i:15754745 original size:13 final size:13
Alignment explanation
Indices: 15754727--15754753 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15754717 TACGCATTAT
15754727 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
15754740 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
15754753 G
1 G
15754754 TTGAGCGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.44, G:0.33, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:15755092 original size:159 final size:158
Alignment explanation
Indices: 15754740--15755294 Score: 517
Period size: 159 Copynumber: 3.5 Consensus size: 158
15754730 TCTCCGGTCG
** * * * * * *
15754740 GCCTCTCCGGTCGGTTGAGCGCTCGCATGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * ** * * * * * * *
15754805 TCCCAAGTCTAAGATCGAATCGAACCGAGGGTTACAAG-ATCAGGATCGGCAGCATGA-A-AGGG
66 TTCCATGTCTAAGCCCCAATCAAACCGAGGGTTGC-AGCAACAGAATCGACAGCA-CACAGAGGG
* * *
15754867 GGATCGGGCCGATCCCCGGTTTATGCATTTT
129 GGATCGGG-CGATCCCCGGCTTACGCATTAT
* * *
15754898 GCCTCTCCGACCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* ** * ** *
15754963 TTCCATGTCTAAGCCCCAGTCGGACCGATGGTTGTGGCAGCAGAATCGACAGCACACAGAGGGGG
66 TTCCATGTCTAAGCCCCAATCAAACCGAGGGTTGCAGCAACAGAATCGACAGCACACAGAGGGGG
* *
15755028 ATCGGGTCGATCCCCGGCTTGCGCATTAG
131 ATCGGG-CGATCCCCGGCTTACGCATTAT
* * * *
15755057 GCCTCTCCGACCGGCTCAGCGCTCC-AACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCCGACCGGCTGAGCGC-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
** * * * * *
15755121 ATTCCCA-GTCTAAGATCGAATCAAACTGAGGGTTGCAGCAACAGGATCGACAGCACGCAGGGGG
65 ATT-CCATGTCTAAGCCCCAATCAAACCGAGGGTTGCAGCAACAGAATCGACAGCACACAGAGGG
* * *
15755185 GGATCGGGCCAGTCCCCAGCTTACGCATTCT
129 GGATCGGGCGA-TCCCCGGCTTACGCATTAT
* ** * * *
15755216 GCCTCTCTGGTCGGCTGAGCGCCCGCATGCTTGTTTCGTGGGTTGGCTTCGGCATACGGAGTTCA
1 GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*
15755281 TTCAATGTCTAAGC
66 TTCCATGTCTAAGC
15755295 ATACGGAGTT
Statistics
Matches: 321, Mismatches: 68, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 101 0.31
159 213 0.66
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCAATCAAACCGAGGGTTGCAGCAACAGAATCGACAGCACACAGAGGGGG
ATCGGGCGATCCCCGGCTTACGCATTAT
Found at i:15756518 original size:26 final size:26
Alignment explanation
Indices: 15756489--15756540 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15756479 GTTGACTTAG
* *
15756489 GCATACGGAGTTCATACCCCGTCTAA
1 GCATACGGAGTTAATACCCAGTCTAA
*
15756515 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATACCCAGTCTAA
15756541 AATCGGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATACCCAGTCTAA
Found at i:15757004 original size:26 final size:26
Alignment explanation
Indices: 15756953--15757005 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15756943 GTTGGCTTAG
*
15756953 GCATACAGAGTTCAGTCCATGTCTAA
1 GCATACAGAGTTCAGTCCATGACTAA
* *
15756979 GCATACGGAGTTCATTCCCA-GACTAA
1 GCATACAGAGTTCAGT-CCATGACTAA
15757005 G
1 G
15757006 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCATGACTAA
Found at i:15757345 original size:171 final size:169
Alignment explanation
Indices: 15756979--15757347 Score: 418
Period size: 171 Copynumber: 2.2 Consensus size: 169
15756969 CCATGTCTAA
* *
15756979 GCATACGGAGTTCATTCCCAGACTAAG-ATCAGACCAGACCGAGGGTTGCGACAGCAGGACCAAA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAGGACCAAA
** * *
15757043 GCAGGATCGACAACACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTTTTCCTCTCCGAC
65 GCAGGATCGACAACACGCAGGGGGGACCAGGCTGATCCCCAACTTGCGCATTATGCCTCTCCGAC
* * * * *
15757108 AGACTGAGCCCCCGCACGCTCATTTCGTGGGTTGGCTTAG
130 AGACTAAGCACCCACACGCTCATTTCATGGGTTGACTTAG
* * * * * * * * **
15757148 GCGTACAGAGTTCATTCAATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGCAGGACCGGC
1 GCATACGGAGTTCATCCCA-GTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAGGACC-AA
* * * * *
15757212 AGCAGGATCGACAGCACGTAGAGGGGGACCTGGCTGATCCCTAACTTGCGCATTATGCCTCTCTG
64 AGCAGGATCGACAACACGCAG-GGGGGACCAGGCTGATCCCCAACTTGCGCATTATGCCTCTCCG
* * *
15757277 GCCGACTAAGCACCCACACGCTCGTTTCATGGGTTGACTTAG
128 ACAGACTAAGCACCCACACGCTCATTTCATGGGTTGACTTAG
15757319 GCATACGGAGTTCATCCGCAGTCTAAGCA
1 GCATACGGAGTTCATCC-CAGTCTAAGCA
15757348 TACGGAATTC
Statistics
Matches: 161, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
168 3 0.02
169 43 0.27
170 22 0.14
171 92 0.57
172 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (169 bp):
GCATACGGAGTTCATCCCAGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAGGACCAAAG
CAGGATCGACAACACGCAGGGGGGACCAGGCTGATCCCCAACTTGCGCATTATGCCTCTCCGACA
GACTAAGCACCCACACGCTCATTTCATGGGTTGACTTAG
Found at i:15757349 original size:26 final size:26
Alignment explanation
Indices: 15757319--15757371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15757309 GTTGACTTAG
*
15757319 GCATACGGAGTTCA-TCCGCAGTCTAA
1 GCATACGGAATTCATTCC-CAGTCTAA
15757345 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15757371 G
1 G
15757372 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15757373 original size:366 final size:355
Alignment explanation
Indices: 15756881--15757564 Score: 852
Period size: 355 Copynumber: 1.9 Consensus size: 355
15756871 GGATCGGGTC
* * * * * * *
15756881 GATCCCTAGCTTGCGCATTCTGCCTCTCCGCTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCTAACTTGCGCATTATGCCTCTCCGCTCGACTAAGCACCCACACGCTCGTTTCATGGGTT
* *
15756946 GGCTTAGGCATACAGAGTTCAGTCCATGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAG
66 GACTTAGGCATACAGAGTTCAGTCCATGTCTAAGCATACGGAATTCATTCCCAGACTAAGATCAG
* *
15757011 ACCAGACCGAGGGTTGCGACAGCAGGACCAAAGCAGGATCGACAACACGCAGGGGGGACCAGGCT
131 ACCAGACCAAGGGTT-----A-C--G---AAAGCAGGATCGACAACACGCAGGGGGGACCAGGCC
* *
15757076 GATCCCCGGCTTGCGCATTTTTCCTCTCCGACAGACTGAGCCCCCGCACGCTCATTTCGTGGGTT
185 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACAGACTGAGCCCCCGCACGCTCATTTCGTGGGTT
* * * ** *
15757141 GGCTTAGGCGTACAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAGG
250 GCCTTAGACATACAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCAAGGGATGTGGCAGCAGG
15757206 ACCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCTGGCT
315 ACCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCTGGCT
*
15757247 GATCCCTAACTTGCGCATTATGCCTCTCTGGC-CGACTAAGCACCCACACGCTCGTTTCATGGGT
1 GATCCCTAACTTGCGCATTATGCCTCTC-CGCTCGACTAAGCACCCACACGCTCGTTTCATGGGT
* *
15757311 TGACTTAGGCATACGGAGTTCA-TCCGCA-GTCTAAGCATACGGAATTCATTCCCAGTCTAAGAT
65 TGACTTAGGCATACAGAGTTCAGT-C-CATGTCTAAGCATACGGAATTCATTCCCAGACTAAGAT
* * * * * * *
15757374 CGGACCGGACCAAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTG
128 CAGACCAGACCAAGGGTTACGAAAGCAGGATCGACAACACGCAGGGGGGACCAGGCCGATCCCCG
* * * * * * *
15757439 GCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGCCTTAGA
193 GCTTGCGCATTCTGCCTCTCCGACAGACTGAGCCCCCGCACGCTCATTTCGTGGGTTGCCTTAGA
** * * *
15757504 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGATGTGGCAGCGGGACCG
258 CATACAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCAAGGGATGTGGCAGCAGGACCG
15757565 ACAGTACGTA
Statistics
Matches: 274, Mismatches: 41, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
355 144 0.53
358 1 0.00
360 1 0.00
361 1 0.00
365 1 0.00
366 122 0.45
367 4 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (355 bp):
GATCCCTAACTTGCGCATTATGCCTCTCCGCTCGACTAAGCACCCACACGCTCGTTTCATGGGTT
GACTTAGGCATACAGAGTTCAGTCCATGTCTAAGCATACGGAATTCATTCCCAGACTAAGATCAG
ACCAGACCAAGGGTTACGAAAGCAGGATCGACAACACGCAGGGGGGACCAGGCCGATCCCCGGCT
TGCGCATTCTGCCTCTCCGACAGACTGAGCCCCCGCACGCTCATTTCGTGGGTTGCCTTAGACAT
ACAGAGTTCATTCAATGTCTAAGCCCCAGCCAGACCAAGGGATGTGGCAGCAGGACCGGCAGCAG
GATCGACAGCACGTAGAGGGGGACCTGGCT
Found at i:15757809 original size:157 final size:154
Alignment explanation
Indices: 15757344--15757844 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 154
15757334 CCGCAGTCTA
* ** **
15757344 AGCATACGGAATTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGATAGCAGGATCGAC
1 AGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * *
15757409 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGCCGAT-CCTGACTTGCGCATTATGCCTCTTCGGCCGGCTGAGC-A
* *
15757474 CCGTACGCTCGTTTCGTGGGTTGCCTT
128 CCGCACGCTCGTTTCGTGGGTTGACTT
* * ** * * *
15757501 AGACATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCAAGGGATGTGGCAGCGGGACCG
1 AG-CATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCAAGGGTTGTGGCAGCAGGATCG
* * * * * * * * *
15757565 ACAGTACGTAGAGGGGGACCAGGTCGAACCTCGCCTTGCGCATTATGCCTCTTCGGCCAGCTCAG
63 ACAGCACGCAG-GGGGGATCGGGCCGATCCT-GACTTGCGCATTATGCCTCTTCGGCCGGCTGAG
* * *
15757630 TACCGCACGCTCATTTCGTGGGTTAACTT
126 CACCGCACGCTCGTTTCGTGGGTTGACTT
* * * * * * *
15757659 ATGCATATGGAGTTCATTCCAGTGTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAAGATCGGC
1 A-GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * *
15757724 AGCACACAGGGGGGATCGGGCCTATCTCTGACTTGCACATTTTGCCTCTCCGGCCGGCTGAGCAC
65 AGCACGCAGGGGGGATCGGGCCGATC-CTGACTTGCGCATTATGCCTCTTCGGCCGGCTGAGCAC
* *
15757789 CTGCACGCTCGTTACGTGGGTTGGCTT
129 C-GCACGCTCGTTTCGTGGGTTGACTT
*
15757816 AGGCATACGGAGTTCATTCAATGTCTAAG
1 A-GCATACGGAGTTCATTCCA-GTCTAAG
15757845 CGTACGGAGT
Statistics
Matches: 270, Mismatches: 64, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
156 42 0.16
157 83 0.31
158 103 0.38
159 42 0.16
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (154 bp):
AGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTGAGCACCG
CACGCTCGTTTCGTGGGTTGACTT
Found at i:15757896 original size:26 final size:26
Alignment explanation
Indices: 15757821--15757886 Score: 132
Period size: 26 Copynumber: 2.5 Consensus size: 26
15757811 GGCTTAGGCA
15757821 TACGGAGTTCATTCAATGTCTAAGCG
1 TACGGAGTTCATTCAATGTCTAAGCG
15757847 TACGGAGTTCATTCAATGTCTAAGCG
1 TACGGAGTTCATTCAATGTCTAAGCG
15757873 TACGGAGTTCATTC
1 TACGGAGTTCATTC
15757887 CCAGTCTAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCAATGTCTAAGCG
Found at i:15758596 original size:26 final size:26
Alignment explanation
Indices: 15758567--15758619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15758557 GTTGACTTAG
* *
15758567 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
*
15758593 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
15758619 G
1 G
15758620 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:15759643 original size:26 final size:26
Alignment explanation
Indices: 15759607--15759657 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15759597 TTGACTTAGG
* *
15759607 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAATCTAAA
*
15759633 CATACAGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATCCCCAATCTAA
15759658 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAA
Found at i:15761403 original size:26 final size:26
Alignment explanation
Indices: 15761367--15761419 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15761357 GTTGGCTTAG
15761367 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
* *
15761393 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15761419 G
1 G
15761420 ATGGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15761810 original size:512 final size:512
Alignment explanation
Indices: 15760791--15761984 Score: 1307
Period size: 512 Copynumber: 2.3 Consensus size: 512
15760781 ACCACCCGTT
* * * * * * * *
15760791 CGATCCTCGGCTTGCACATCCTGCCTCTCTGGCCGACTGAGCGTCTGCATGCTCGTTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * *
15760856 TGACTTAGGCATACGGAAGTTCATCCCCA-GTCTACGCATACGGAGCTCAATCCCAGTATAAGA-
66 TGGCTTAGGCATACGG-AGTTCA-CTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
*
15760919 GCGGACTGGATCGAGGGTTGCGT-------TAGCA--A-GATCGACAGCACGCAGGGGGATCGGG
129 G-GGACTGGACCGAGGGTTGCGTAGCAGACTAGCAGCAGGATCGACAGCACGCAGGGGGATCGGG
* * *
15760974 CCGATCCCTGGCTTGCACATTCTACCTCTCGCCGGACTGAGTGCCCGCACGCCCGTTCAATGGGT
193 CCGATCCCTGGCTTACACATTCTACCTCTCGACGGACTGAGTGCCCGCACGCCCGTTCAATAGGT
*
15761039 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCCAGGGTATGTGGCAGCT
258 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCCAGGGTATGTGGCAGCT
* * * * *
15761104 GGGACTGGCAGCACGCAGAGGGGGGATCGGGCCAACCCCCGGCTTGCGCATTATGCCTCTCTGAT
323 GGGACCGACAGCACGCAGAGGGGGGATCGGGCCAACCCCCGGCTTACGAATTATGCCTCTCTGAC
* ** * * ** ** *
15761169 CGGCTCAGTGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATATGGAGTTCATTTTCGGTCTA
388 CCGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTA
* * * * * * * * * **
15761234 AGATCGGATCGAACTGAGGGTTGTGGTAACAGGATCGATAGCATGAAGGGGGAGCCGGGC
453 AGATCGGACCAAACCGAGGGTTGCGGCAACAGGATCAACAACACGAAGGGGGAGCCAAGC
* * *
15761294 CGATCCTCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
15761359 TGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATGG
66 TGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGG
* *
15761424 GATTGGACCGAGGGTTGCGATAGCAAGACTAGCAGCAGGATCGATAGCACGCAGGGGGGATCGGG
131 GACTGGACCGAGGGTTGCG-TAGC-AGACTAGCAGCAGGATCGACAGCACGCA-GGGGGATCGGG
* *** **
15761489 TC-AT-CCTCGGCTTACGTGTTCTACCTCTTCGATTGACTGAGTGCCCGCACGCCCGTTTC-ATA
193 CCGATCCCT-GGCTTACACATTCTACCTC-TCGACGGACTGAGTGCCCGCACGCCCG-TTCAATA
* * **
15761551 GGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCTCCACCCAGACTGAGGGT-TGTGGCA
255 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCCAGGGTATGTGGCA
* * * * *
15761615 GCT-GGACCGATAGCACGTAGA-GGGGGATCGGGCCGATCCTCGGCTTACGAATTATGCCTCT-T
320 GCTGGGACCGACAGCACGCAGAGGGGGGATCGGGCCAACCCCCGGCTTACGAATTATGCCTCTCT
* * * *
15761677 CGGCCCGCTCAACGCTCGCACGCTCATTTCGTGGGTTTACTTAAGCATACAGAGTTCATTCCCAG
385 -GACCCGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAG
** * *
15761742 TCTAAGATCGGACCAAACCGAGGGTTGCGGCAGTAGGATCAACAACACGTAGGGGG-GACTAAGC
449 TCTAAGATCGGACCAAACCGAGGGTTGCGGCAACAGGATCAACAACACGAAGGGGGAG-CCAAGC
* * * * * * *
15761806 CGATCCCCGACTTGCGCATTCTGGCTCTCCGA-TCAACTGATCGCCCGCACACTCGTTTCGGGGG
1 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGACT-GACTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *
15761870 TTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATC
65 TTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATG
* *
15761935 GGACCGGACCGAGGGTTACGGTAGCAGGAAC-AGCAGCAGGATCGACAGCA
130 GGACTGGACCGAGGGTTGC-GTAGCA-G-ACTAGCAGCAGGATCGACAGCA
15761985 GGATCAGTAG
Statistics
Matches: 573, Mismatches: 94, Indels: 39
0.81 0.13 0.06
Matches are distributed among these distances:
501 4 0.01
502 53 0.09
503 71 0.12
511 9 0.02
512 281 0.49
513 21 0.04
514 41 0.07
515 90 0.16
516 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (512 bp):
CGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGG
GACTGGACCGAGGGTTGCGTAGCAGACTAGCAGCAGGATCGACAGCACGCAGGGGGATCGGGCCG
ATCCCTGGCTTACACATTCTACCTCTCGACGGACTGAGTGCCCGCACGCCCGTTCAATAGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCCAGGGTATGTGGCAGCTGGG
ACCGACAGCACGCAGAGGGGGGATCGGGCCAACCCCCGGCTTACGAATTATGCCTCTCTGACCCG
CTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGA
TCGGACCAAACCGAGGGTTGCGGCAACAGGATCAACAACACGAAGGGGGAGCCAAGC
Found at i:15761974 original size:12 final size:12
Alignment explanation
Indices: 15761957--15762008 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
15761947 GGGTTACGGT
*
15761957 AGCAGGAACAGC
1 AGCAGGATCAGC
15761969 AGCAGGATC-GAC
1 AGCAGGATCAG-C
*
15761981 AGCAGGATCAGT
1 AGCAGGATCAGC
*
15761993 AGCAGGACCAGC
1 AGCAGGATCAGC
15762005 AGCA
1 AGCA
15762009 TGCAGGGGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
11 1 0.03
12 32 0.94
13 1 0.03
ACGTcount: A:0.37, C:0.25, G:0.33, T:0.06
Consensus pattern (12 bp):
AGCAGGATCAGC
Found at i:15763105 original size:26 final size:26
Alignment explanation
Indices: 15763067--15763119 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15763057 GTTGGCTTAG
15763067 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15763093 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15763119 G
1 G
15763120 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15763648 original size:26 final size:26
Alignment explanation
Indices: 15763619--15763671 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15763609 GTTGGCTTAG
15763619 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15763645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15763671 G
1 G
15763672 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15765275 original size:26 final size:26
Alignment explanation
Indices: 15765245--15765295 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15765235 ATGACTTAGG
15765245 CATACGGAGTTCA-TCCCTAGTCTAAA
1 CATACGGAGTTCATTCCC-AGTCTAAA
*
15765271 CATACGGAGTTTATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15765296 GATCAGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:15765410 original size:904 final size:903
Alignment explanation
Indices: 15763534--15765456 Score: 2876
Period size: 904 Copynumber: 2.1 Consensus size: 903
15763524 AGCACACAGA
* * * * * *
15763534 GGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCT
1 GGGGGA-CGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCC
15763599 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * *
15763664 AGTCTAAGAGTTTGAGCCATGGTGCACATGCTGGGCTCGGGGCATATGCTGGTGCTGCATTTTTT
130 AGTCTAAGAGTTTGAGCCACGGTCCACATGCTGGGCTCGGGGCATATGCTGGTGCTACATTTTTT
** * * *
15763729 CACCTGGGGCACCATCACCGGAGCATTGTCGGAGAGCCTAACCGACGGCATTGGGGTTTCTGGCG
195 CACCCAGGGCACCATCACCGGAGCATCGTCGGAGAGCCCAACCGACGCCATTGGGGTTTCTGGCG
*
15763794 ATTGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
260 ATTGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTG
* *
15763859 GCCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTATAG
325 GCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
* * *
15763924 GTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGGCACTTTTTTCAAACGGTCACAAAATC
390 GTTTACTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACCTTTTTCAAACGGTCACAAAATC
*
15763989 TTCTCCACTACGAGTTTTAGCTAAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACCTCT
455 TTCTCCACTACGAGTTTTAGCTAAATTATTTTATGCATGCCAACAAAAATACAAGGATCACCTCT
* *
15764054 ACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAAGCGTAAAAAGTTTT
520 ACCAAATTTGGCGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTT
* * *
15764119 AAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACGTGAAGGCGTAGGGGAC
585 AAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCGTAGGGAAC
* *
15764184 CATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCTTGA
650 CATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCTTGA
* * * *
15764249 ACCCACCTACCACCCGTTCGATCCCCGGCTTACGCAGCCTGCCTCTCTGGTCGGCTGAGCGTCCG
715 ACCCACCTACCACCCGTTCGATCCACGGCTTACGCAGCCTGCCTCTCTAGCCGACTGAGCGTCCG
* * *
15764314 CACGCTCGTTCTATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
780 CACGCTCGTTCTATGGGATAACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTC
* * * * *
15764379 ATTCTAGTCTAAGATCAGATTGGATCAAGGGTTGCGATAGCAGGATCGACAGCATGTAG
845 ATTCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGACAGCAGGATCGACAGCATGCAG
* ** * * *
15764438 GGGGGACAGGGCAGATCCCCGTATTACGCATTCTGCCTTTCCGATCGACTGAGCGCCCGCACGCC
1 GGGGGAC-GGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCC
* * *
15764503 CGTTTTGTGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCC
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
*
15764568 AGTCTAAGAGTTTGAGCCACGGTCCACATGCTGGGCTC-GGGCATGTGCTGGTG-TCACATTTTT
130 AGTCTAAGAGTTTGAGCCACGGTCCACATGCTGGGCTCGGGGCATATGCTGGTGCT-ACA-TTTT
** * *
15764631 TTCACCCAGGGCACCATCGTCGGAGCATCGTCGGAGAGCCCAATCGACGCCATTGGTGTTTC-GG
193 TTCACCCAGGGCACCATCACCGGAGCATCGTCGGAGAGCCCAACCGACGCCATTGGGGTTTCTGG
* * *
15764695 TGATTGGGGGGGCC-GGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATA
258 CGATT-GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATA
15764759 TTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
322 TTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
15764824 TAGGTTTACT-CTCAGTAGCC-ATCAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACG
387 TAGGTTTACTGC-CAGTAGCCAAT-AAAGTGTCTGAAATGGGGACACCTTTTTCAAACGGTCACA
* * *
15764887 AAATCTTCTCCAC-ATCGAATTTTTAGCTTAATTTTTTTATGCATGCCAACAAAAATACAAGGAT
450 AAATCTTCTCCACTA-CG-AGTTTTAGCTAAATTATTTTATGCATGCCAACAAAAATACAAGGAT
* *
15764951 CACCTCTACCAAATTTGGCGACAATACTCTTTCTAAAAAGATTTTAAAAAATCTCGAACCGTAAA
513 CACCTCTACCAAATTTGGCGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAA
* * * *
15765016 AAGTTTTAAAAATCGTGAAAAATAGAAAATGGGTCATCTTGCCATGAAACTTCACATGAAGGTGT
578 AAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCGT
* * **
15765081 AGGGAACCATTATATGAATTTACAAGTCATAAAAATGGCATTGTCATGGTAGAAATATGCCGATG
643 AGGGAACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATG
* *
15765146 TGCTTGAACCTACCTACCACCCGTTCGATCCACGGCTTACGCATCCTGCCTCTCTAGCCGACTGA
708 TGCTTGAACCCACCTACCACCCGTTCGATCCACGGCTTACGCAGCCTGCCTCTCTAGCCGACTGA
* *
15765211 GCGTCCGCACGCTCGTT-TCATGGGATGACTTAGGCATACGGAGTTCATCCCTAGTCTAAACATA
773 GCGTCCGCACGCTCGTTCT-ATGGGATAACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATA
* * * *
15765275 CGGAGTTTATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGCAGGATCGGCCGCATG
837 CGGAGTTCATT-CCAGTCTAAGATCAGACTGGACCAAGGGTTGCGACAGCAGGATCGACAGCATG
15765340 CAG
901 CAG
* * * *
15765343 GGGGGATCGAGCCGATCCCCGGCTT-CGCATTTTGCCTCTCCGGTCGGCTGA-CACTCCGCATGC
1 GGGGGA-CGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCAC-CCGCACGC
*
15765406 CCGTTTCGTGGGTTTGGCTTAGGCATAGGGAGTTCATGTCCATGTCTAAGC
64 CCGTTTCGTGGG-TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
15765457 CTCTTTATAA
Statistics
Matches: 912, Mismatches: 93, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
902 5 0.01
903 204 0.22
904 600 0.66
905 89 0.10
906 14 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (903 bp):
GGGGGACGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCCC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGAGTTTGAGCCACGGTCCACATGCTGGGCTCGGGGCATATGCTGGTGCTACATTTTTTC
ACCCAGGGCACCATCACCGGAGCATCGTCGGAGAGCCCAACCGACGCCATTGGGGTTTCTGGCGA
TTGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
TTTACTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACCTTTTTCAAACGGTCACAAAATCT
TCTCCACTACGAGTTTTAGCTAAATTATTTTATGCATGCCAACAAAAATACAAGGATCACCTCTA
CCAAATTTGGCGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTA
AAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCGTAGGGAACC
ATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCTTGAA
CCCACCTACCACCCGTTCGATCCACGGCTTACGCAGCCTGCCTCTCTAGCCGACTGAGCGTCCGC
ACGCTCGTTCTATGGGATAACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCA
TTCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGACAGCAGGATCGACAGCATGCAG
Found at i:15765597 original size:167 final size:158
Alignment explanation
Indices: 15765271--15765781 Score: 512
Period size: 157 Copynumber: 3.2 Consensus size: 158
15765261 CTAGTCTAAA
* * * *
15765271 CATACGGAGTTTATTCCCA-GTCTAAG-ATCAGACTGGACCAAGGGTTGCGGCAGCAGGATCGGC
1 CATACGGAGTTCATT-CCATGTCTAAGCATCATACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
15765334 CGCATGCAGGGGGGATCGAGCCGATCCCCGGCTTCGCATTTTGCCTCTCCGGTCGGCTGA-CACT
65 AGCATGCAAGGGGGATCGGGTCGATCCCCGGCTTCGCATTATGCCTCTCCGGTCGGCTGAGCGC-
* * *
15765398 CCGCATGCCCGTTTCGTGGGTTTGGCTTAGG
129 CCGCACGCTCGTTTAGTGGG-TTGGCTTAGG
* * *
15765429 CATAGGGAGTTCATGTCCATGTCTAAGCCTCTTTATAAGCCGGACCGAGGGTTGTGGCGAGCAGG
1 CATACGGAGTTCAT-TCCATGTCTAAGCATC---AT-A-CCGGACCGAGGGTTGCGGC-AGCAGG
* * * *
15765494 ATCGGTAGCACGCAAAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCTGATCGGC
59 ATCGGCAGCATGC-AAGGGGGATCGGGTCGATCCCCGGCTT-CGCATTATGCCTCTCCGGTCGGC
* * * * * *
15765559 TCAGCGCCCGTACACTCATTTTGTGGGTTGACTTAGG
122 TGAGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGG
* ** * * *
15765596 CATACGGAATTCATTCCCGGTCTAAG-ATCATACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
1 CATACGGAGTTCATTCCATGTCTAAGCATCATACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
15765660 GCATGC-AGGGGGA-CAGGGTCGATCCTCGGCTTGCTCATTCTGCCTCTCCGGTCAGCTGAGCGC
66 GCATGCAAGGGGGATC-GGGTCGATCCCCGGCTT-CGCATTATGCCTCTCCGGTCGGCTGAGCGC
*
15765723 CCGCACGCTCGTTTAATGGGTTGGCTTAGG
129 CCGCACGCTCGTTTAGTGGGTTGGCTTAGG
*
15765753 CATACGGAGTTAATTCCATGTCTAAGCAT
1 CATACGGAGTTCATTCCATGTCTAAGCAT
15765782 ACAAAGTTCA
Statistics
Matches: 285, Mismatches: 54, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 93 0.33
158 17 0.06
159 24 0.08
160 18 0.06
161 1 0.00
162 2 0.01
163 1 0.00
164 1 0.00
165 18 0.06
166 26 0.09
167 45 0.16
168 36 0.13
169 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CATACGGAGTTCATTCCATGTCTAAGCATCATACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCATGCAAGGGGGATCGGGTCGATCCCCGGCTTCGCATTATGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTAGTGGGTTGGCTTAGG
Found at i:15766571 original size:159 final size:157
Alignment explanation
Indices: 15766082--15766625 Score: 479
Period size: 159 Copynumber: 3.4 Consensus size: 157
15766072 TCTCCGATCG
* * * *
15766082 GCCTCTCCGGTCGGTTGAGTGCTCGCATGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCAGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
15766147 -TCCCAAGTCTAAGATCGAATTGAACCGAGGGTTGCA-AGATCAGGATCGGCAGCACGAAAGG-G
66 TTCCC-AGTCTAAGATCGAATCGAACCGAGGGTTGCAGAG-T-AGGATCGACAGCACG-CAGGAG
* * * *
15766209 GGATCGGGCCGATCCCTGGCTTACGCATTTT
127 GGATCGGGCCGATCCCCGACTTAGGCATTAT
* ** * * * *
15766240 GCCTTTCCAACCGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCAGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
** * * * ** ** * * * *
15766305 TT-CCATGTCTAAGCCCCAGTCGGACCGATAGTTGTGGCAGCAGAATCGACAGCACACAGAAGGG
66 TTCCCA-GTCTAAGATCGAATCGAACCGAGGGTTGCAG-AGTAGGATCGACAGCACGCAGGA-GG
* *
15766369 GATCGGGTCGATCCCCGACTT-GCGCATTAG
128 GATCGGGCCGATCCCCGACTTAG-GCATTAT
* * * *
15766399 GCCTCTTCAGTCGGCTCAGTGCTCC-AACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCCAGTCGGTTGAGTGC-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * *
15766463 ATTCCCAGTCTAAGATCGAATCAAATCGAGGGTTGCAGTAGTAGGATCGACAGCATGCTAGGAGG
65 ATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCAG-AGTAGGATCGACAGCACGC-AGGAGG
* * *
15766528 GATCGGGCCGGTCCCCAACTTAGGCATTCT
128 GATCGGGCCGATCCCCGACTTAGGCATTAT
** * * * ** * *
15766558 GCCTCTCTGGTCGGTTGAGCGCCCGCATGCTTGTTTTGTGGGTTGGCTTCGGCATACGGAGTTCA
1 GCCTCTCCAGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
15766623 TTC
66 TTC
15766626 AATGTCTAAG
Statistics
Matches: 295, Mismatches: 79, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 90 0.31
159 191 0.65
160 11 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCCTCTCCAGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCAGAGTAGGATCGACAGCACGCAGGAGGGAT
CGGGCCGATCCCCGACTTAGGCATTAT
Found at i:15766856 original size:26 final size:26
Alignment explanation
Indices: 15766820--15766870 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15766810 TGACTTAGGC
*
15766820 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
*
15766846 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
15766871 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:15768272 original size:159 final size:159
Alignment explanation
Indices: 15767963--15768323 Score: 426
Period size: 159 Copynumber: 2.3 Consensus size: 159
15767953 TGTGCATTCG
* * * *
15767963 TGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCTCAGTCGGACCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATCAGACGGACCGAGGGTTGCGGC
*
15768028 AGCAGGACCGACAGCACGCAAAGGGGGACCAGGCCGATCCCCGACTCGCGCATTATGCCTCTCCA
66 AGCAGGACCGACAGCACGCAAAGGGGAACCAGGCCGATCCCCGACTCGCGCATTATGCCTCTCCA
*
15768093 GCAAGCTCAGCGCCCACACGCTCATTTCA
131 GCAAGCTCAGCGACCACACGCTCATTTCA
*
15768122 TGGGTTGACTTAGGCATACGGAGTTCT-TTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGC
1 TGGGTTGGCTTAGGCATACGGAGTT-TATT-CCATGTCTAAGCATCAGAC-GGACCGAGGGTTGC
* * ** * * * * *
15768184 GGCAGCAGGATCGACAGCATGCAGTGGGGAATCGGGTCGATCCCC-AGCTTGCGCATTCTGCCTC
63 GGCAGCAGGACCGACAGCACGCAAAGGGGAACCAGGCCGATCCCCGA-CTCGCGCATTATGCCTC
** * * *
15768248 TCC-GCCTGGCTGAGCGACCGCACGCTCATTTCG
127 TCCAG-CAAGCTCAGCGACCACACGCTCATTTCA
** *
15768281 TGGGTTGGCTTAGGCATACATAGTTCATTCCATGTCTAAGCAT
1 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCAT
15768324 ACGGAGTTCA
Statistics
Matches: 169, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
158 10 0.06
159 153 0.91
160 6 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATCAGACGGACCGAGGGTTGCGGC
AGCAGGACCGACAGCACGCAAAGGGGAACCAGGCCGATCCCCGACTCGCGCATTATGCCTCTCCA
GCAAGCTCAGCGACCACACGCTCATTTCA
Found at i:15768699 original size:26 final size:26
Alignment explanation
Indices: 15768660--15768712 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15768650 GTTGACTTAG
*
15768660 GCATACAGAGTTCA-TCCGCAGTCTAA
1 GCATACAGAATTCATTCC-CAGTCTAA
*
15768686 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15768712 G
1 G
15768713 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15768714 original size:366 final size:343
Alignment explanation
Indices: 15768028--15769017 Score: 931
Period size: 355 Copynumber: 2.8 Consensus size: 343
15768018 GGGTTGTGGC
* * * *
15768028 AGCAGGACCGACAGCACGCAAAGGGGGACCAGGCCGATCCCCGACTCGCGCATTATGCCTCTCCA
1 AGCAGGATCGACAGCACGC-AGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCA
* * * * * * *
15768093 GCA-AGCTCAGCGCCCACACG-CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCTTTCCCA-
65 GCAGA-CTGAGCGCCCGCACGTC-CATTTCGTGGGTTGCCTTAGACATACAGAGTTCATT-CCAT
** * * * * * * * * * * *
15768155 GTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGTGGGGAATC-G
127 GTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGACCAG
* * * * * * * *
15768218 GGTCGATCCCCAGCTTGCGCATTCTGCCTCTC-CGCCTGGCTGAGCGACCGCACGCTCATTTCGT
191 GCT-GATCCCCAACTTGCGCATTATGCCTCTCTGGCC-GACTGAGCGCCCGTACGCTCGTTTCGT
* * * *
15768282 GGGTTGGCTTAGGCATACATAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGACTAAG
254 GGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGAATTCATTCCCAGACTAAG
* *
15768347 ATCGGACCAGACCGAGGGTTGCGACAGCAGGACCAA
319 ATCAGACCAGACCAAGGGTT------GC--G---AA
* * * *
15768383 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCCGACTTGCGTATTTTTCCTCTCCAG
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAG
* * *
15768448 CAGACTGAGCGCCCGCACG-CTCATTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCATGTC
66 CAGACTGAGCGCCCGCACGTC-CATTTCGTGGGTTGCCTTAGACATACAGAGTTCATTCCATGTC
*
15768512 TAAGCCCCAGCC-AGACTGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAG
130 TAAGCCCCAGCCGA-ACCGAGGGTTGTGGTAGC--G---GG-A-C-----CGACAGCACGTAGAG
* *
15768576 GGGGACCTGGCTGATCTCCAACTTGCGCATTATGCCTCTCTGGCCGACTGAGCGCCCGTACGCTC
182 GGGGACCAGGCTGATCCCCAACTTGCGCATTATGCCTCTCTGGCCGACTGAGCGCCCGTACGCTC
15768641 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCGCA-GTCTAAGCATACGGAATTCATTCCC
247 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCC-CATGTCTAAGCATACGGAATTCATTCCC
* * *
15768705 AGTCTAAGATCAGACCGGACCAAGGGTTGCGAT
311 AGACTAAGATCAGACCAGACCAAGGGTTGCGAA
* * *
15768738 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAG
* ** * * * **
15768803 CCGGTTGAGCTCCCGTACGTCCGTTTCGTGGGTTGCCTTAGACATAGGGAGTTCATTCCATGTCT
66 CAGACTGAGCGCCCGCACGTCCATTTCGTGGGTTGCCTTAGACATACAGAGTTCATTCCATGTCT
*
15768868 AAGCCCCAGCCGAACCGAGGGTTGTGGTAGCGGGACCGACAGTACGTAGAGGGGGACCAGGCTGA
131 AAGCCCCAGCCGAACCGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGACCAGGCTGA
** * * * *
15768933 TCCCCGCCTTGCACTTTATGCCTCT-TCGGCC-AGCTCAGTGCCCGTACGCTCGTTTCGTGGGTT
196 TCCCCAACTTGCGCATTATGCCTCTCT-GGCCGA-CTGAGCGCCCGTACGCTCGTTTCGTGGGTT
* * **
15768996 AACTTATGCATATGGAGTTCAT
259 GACTTAGGCATACAGAGTTCAT
15769018 TCCAGTGTAA
Statistics
Matches: 534, Mismatches: 78, Indels: 58
0.80 0.12 0.09
Matches are distributed among these distances:
342 2 0.00
343 97 0.18
348 1 0.00
349 1 0.00
350 2 0.00
353 4 0.01
354 111 0.21
355 161 0.30
356 2 0.00
358 1 0.00
359 2 0.00
360 3 0.01
366 139 0.26
367 8 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (343 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAG
CAGACTGAGCGCCCGCACGTCCATTTCGTGGGTTGCCTTAGACATACAGAGTTCATTCCATGTCT
AAGCCCCAGCCGAACCGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGACCAGGCTGA
TCCCCAACTTGCGCATTATGCCTCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA
CTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACGGAATTCATTCCCAGACTAAGATCAGAC
CAGACCAAGGGTTGCGAA
Found at i:15769911 original size:26 final size:26
Alignment explanation
Indices: 15769882--15769934 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15769872 GTTGACTTAG
* *
15769882 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
*
15769908 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
15769934 G
1 G
15769935 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:15771212 original size:29 final size:29
Alignment explanation
Indices: 15771176--15771237 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
15771166 GCTGGATCGA
** *
15771176 CAGCACGCAGGGGGGACCGGGTCGATCCC
1 CAGCACGCAGAAGGGACCGGGCCGATCCC
15771205 CAGCACGCAGAAGGGACCGGGCCGATCCC
1 CAGCACGCAGAAGGGACCGGGCCGATCCC
15771234 CAGC
1 CAGC
15771238 TTGCGCATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.21, C:0.37, G:0.37, T:0.05
Consensus pattern (29 bp):
CAGCACGCAGAAGGGACCGGGCCGATCCC
Found at i:15771507 original size:26 final size:26
Alignment explanation
Indices: 15771471--15771523 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15771461 GTTGACTTAG
15771471 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15771497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15771523 G
1 G
15771524 ATCGGATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15771940 original size:355 final size:349
Alignment explanation
Indices: 15771205--15771947 Score: 752
Period size: 355 Copynumber: 2.1 Consensus size: 349
15771195 GGTCGATCCC
** * * *
15771205 CAGCACGCAGAAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGACCGACTGAGTG
1 CAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCACTCTGACCGACTGAGTG
* ** *
15771270 CCCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
66 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTC
* ** *
15771335 AGACCGAGGGTTGTGGCAGCAGGATAGGCAGCGGGATCAACAGCACGCAGAGGGGGATTGGGCTG
131 AGACCAAGGGTTGTGGCAGCA-GA-AGGCAGC--G--CAACAGCACGCAGAGGGGGACCGGGCCG
* * ** * * *
15771400 ATCCTCGACTTGCGTATTATGCCTCTCCGGTCGACTGAGCGCCCGTACGCTCGTTTCGTAAGTTG
190 ATCCCCGACTTGCGCATTACACCTCTCCGGTCGACCGAGCGCCCGCACGCTCATTTCGTAAGTTG
* *
15771465 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
255 ACGTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGA
** * *
15771530 TTGAACCAAAGGTTGTGGCAGTAGGATCGG
320 CCGAACCAAAGGTTGAGGCAGTAGGATCGA
* * * * * * * *
15771560 CAGCACGTATGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCACTCT-AGTCGGCTGGGT
1 CAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCACTCTGA-CCGACTGAGT
* ** *
15771624 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTGTTCGATGTCTAAGCACCAG-
65 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGT
* *
15771688 CTATACCAAGGGTTGTGGCAGC-G-A-G-A-C-CGACAGCACGCAGAGGGGGACCGGGCCGATCC
130 C-AGACCAAGGGTTGTGGCAGCAGAAGGCAGCGCAACAGCACGCAGAGGGGGACCGGGCCGATCC
* * * * *
15771747 CCTG-CTTGCGCATTCCACCTCTTCGG-CTGGCCGAGGGCCCGCACGCTCATTTCGTAGGTTGAC
194 CC-GACTTGCGCATTACACCTCTCCGGTC-GACCGAGCGCCCGCACGCTCATTTCGTAAGTTGAC
* * *
15771810 GTAGGCATACATAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGAC
257 GTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGAC
* *
15771874 CGAACCGAGGGCTGTGGCAGCAAGACCAGTAGCTGGATCGA
321 CGAACCAAAGG-T-T-G-AG---G--CAGTA---GGATCGA
15771915 CAGCACGCAGGGGGGACCGGGTCGATCCCCAGC
1 CAGCACGCAGGGGGGACCGGGTCGATCCCCAGC
15771948 ACGCAGAGGG
Statistics
Matches: 317, Mismatches: 54, Indels: 34
0.78 0.13 0.08
Matches are distributed among these distances:
342 4 0.01
343 137 0.43
344 2 0.01
345 1 0.00
346 1 0.00
347 1 0.00
348 1 0.00
349 1 0.00
350 2 0.01
351 1 0.00
352 5 0.02
353 1 0.00
354 2 0.01
355 158 0.50
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (349 bp):
CAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCACTCTGACCGACTGAGTG
CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTC
AGACCAAGGGTTGTGGCAGCAGAAGGCAGCGCAACAGCACGCAGAGGGGGACCGGGCCGATCCCC
GACTTGCGCATTACACCTCTCCGGTCGACCGAGCGCCCGCACGCTCATTTCGTAAGTTGACGTAG
GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGAAC
CAAAGGTTGAGGCAGTAGGATCGA
Found at i:15771951 original size:29 final size:29
Alignment explanation
Indices: 15771915--15771976 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
15771905 GCTGGATCGA
* *
15771915 CAGCACGCAGGGGGGACCGGGTCGATCCC
1 CAGCACGCAGAGGGGACCGGGCCGATCCC
15771944 CAGCACGCAGAGGGGACCGGGCCGATCCC
1 CAGCACGCAGAGGGGACCGGGCCGATCCC
15771973 CAGC
1 CAGC
15771977 TTGCGCATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.19, C:0.37, G:0.39, T:0.05
Consensus pattern (29 bp):
CAGCACGCAGAGGGGACCGGGCCGATCCC
Found at i:15772209 original size:26 final size:26
Alignment explanation
Indices: 15772159--15772211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15772149 GTTGGCTTAG
*
15772159 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
15772185 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15772211 G
1 G
15772212 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15778799 original size:26 final size:26
Alignment explanation
Indices: 15778762--15778813 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15778752 GTTGACTTAG
*
15778762 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15778788 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15778814 TATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15779245 original size:157 final size:158
Alignment explanation
Indices: 15778788--15779279 Score: 571
Period size: 158 Copynumber: 3.1 Consensus size: 158
15778778 CCCAGTCTAA
* * *
15778788 GCATACGAAGTTCATTCCCAGTCTAATATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * **
15778853 GCACGCAGGAGGGACCGGGCCAATCCCCGGCTTGCGCAATCTACCTCTCCGACCGATTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
15778918 CGCACGC-CTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * *
15778946 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCTG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * *
15779009 -TAGCACGTAAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCCCCGACCGGCTCAG
63 ATAGCACG-CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAG
* * *
15779073 TGCCCGCACGTTCGTTTCGTGGGTTGACTT-G
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
15779104 GGATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * *
15779169 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCTCATTTTGCGTCTCCAATCGGCTGAGCCCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
*
15779234 CGCACGCTCGTTTTGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
15779262 GCATACGAAGTTCATTCC
1 GCATACGAAGTTCATTCC
15779280 ATGTTTAAGC
Statistics
Matches: 273, Mismatches: 52, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 77 0.28
158 119 0.44
159 76 0.28
160 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15779314 original size:26 final size:26
Alignment explanation
Indices: 15779262--15779314 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15779252 GTTGGCTTAG
*
15779262 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
15779288 GCATAC-AGAGTTCATTCCCA-GTCTAA
1 GCATACGA-AGTTCATT-CCATGTCTAA
15779314 G
1 G
15779315 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:15779547 original size:26 final size:26
Alignment explanation
Indices: 15779511--15779563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15779501 GTTGACTTAG
15779511 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
15779537 GCATACGAAGTTCATTCCCAATTTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15779563 G
1 G
15779564 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15779890 original size:26 final size:26
Alignment explanation
Indices: 15779854--15779906 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15779844 GTTGGCTTAG
15779854 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15779880 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15779906 G
1 G
15779907 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15780614 original size:26 final size:26
Alignment explanation
Indices: 15780575--15780627 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15780565 GTTGACTTAG
*
15780575 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
15780601 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
15780627 G
1 G
15780628 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:15780891 original size:159 final size:159
Alignment explanation
Indices: 15780676--15781105 Score: 485
Period size: 159 Copynumber: 2.7 Consensus size: 159
15780666 GCGCACAGGG
* * * * *
15780676 GGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCGCCCGCACAGC-C
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGAGCCCGCAC-GCTC
* * * * *
15780740 GTTTCTTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACAGAGGG
65 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACAGACGG
* * * *
15780804 TTGTGGCAGCGAGACCGACAGCACGCAGAAA
130 TTGCGGCAGCAAGACCAACAGCACGAAG-AA
** * * *
15780835 GGGACCGGGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCA
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGAGCCCGCACGCTCG
** * * * * * *
15780900 TTTCGTGGGTTAACTTAAGCATACGAAGTTCATTACCA-GTCTAAG-ATCGGACCGGACTGACGG
66 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACAGACGG
* **
15780963 TTGCGGCAGCAAGATCAACAGCACGAAGGG
130 TTGCGGCAGCAAGACCAACAGCACGAAGAA
*
15780993 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCTGC-CAGAGCGCCTGCACGC
1 GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTCAGAGC-CC-GCACGC
15781056 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
63 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15781106 TACGGAGTTC
Statistics
Matches: 224, Mismatches: 39, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 6 0.03
158 50 0.22
159 164 0.73
160 4 0.02
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (159 bp):
GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGAGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACAGACGGT
TGCGGCAGCAAGACCAACAGCACGAAGAA
Found at i:15781113 original size:26 final size:26
Alignment explanation
Indices: 15781077--15781129 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15781067 GTTGGCTTAG
15781077 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15781103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15781129 G
1 G
15781130 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15781476 original size:26 final size:26
Alignment explanation
Indices: 15781440--15781492 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15781430 TTTGACTTAG
15781440 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15781466 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15781492 G
1 G
15781493 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15781503 original size:363 final size:353
Alignment explanation
Indices: 15780991--15781669 Score: 898
Period size: 351 Copynumber: 1.9 Consensus size: 353
15780981 CAGCACGAAG
* *
15780991 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCTGCCAGAGCGCCTGCACGC
1 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCTGCCAGAGCGCCCGCACGC
* * *
15781056 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
66 TCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCC
* *
15781121 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGGAGGACCAACAGCAGGATTGGCAGCACAT
131 CAGTCTAAGATCAGACCGGACCGAGGGTT---AC-----G----ACAGCAGGATCGGCAGCACAT
* *
15781186 AGGGGGGATTGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACG
184 AGGGGGGATTGGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACG
* **
15781251 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTTGGACCGAG
249 CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTCAGACCGAG
15781316 GGTGGTAGCAGGACCAGCAGTTGGATCGGCAGCATACAGA
314 GGTGGTAGCAGGACCAGCAGTTGGATCGGCAGCATACAGA
* * * * *
15781356 GGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCT-TCCGGCC-GGCTGAGCGCCCGCACGC
1 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCTGCCAGAGCGCCCGCACGC
*
15781419 TCGTTTCGTGATTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCA-TC
66 TCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTC
* * * **
15781482 TCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGCAGGATCGGTAGCATGTAGGGGGGATT
130 -CCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACATAGGGGGGATT
* * * * * * *
15781547 GGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGGGTGCCCGCACGCCCGTTTCGT
194 GGGCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCATTTCAT
* * * *
15781612 GGGTTGGCTTAGGCGTAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
259 GGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTCAGACCGAGGGT
15781670 TGTGGCAACG
Statistics
Matches: 278, Mismatches: 34, Indels: 18
0.84 0.10 0.05
Matches are distributed among these distances:
351 133 0.48
355 1 0.00
360 2 0.01
362 2 0.01
363 96 0.35
364 9 0.03
365 35 0.13
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (353 bp):
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCTGCCAGAGCGCCCGCACGC
TCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGGCAGCACATAGGGGGGATTGG
GCCAATCCCCAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCATTTCATGG
GTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGTCAGACCGAGGGTGGTAGCAGG
ACCAGCAGTTGGATCGGCAGCATACAGA
Found at i:15781945 original size:158 final size:158
Alignment explanation
Indices: 15781466--15781967 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 158
15781456 CCCAGTCTAA
* * * * ** *
15781466 GCATACGGAGTTCA-TCTCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGCAGGATCGGT
1 GCATACGGAGTTCATTC-CCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * * * * * *
15781530 AGCATGTAGGGGGGATTGGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGGGTGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
* *
15781595 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * *
15781624 GCGTAGGGATTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAACGGGACCTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * * * *
15781687 CAGCACGCAGAGGGGGACCGGGTTGATCCCCGACTTGCGCATTATGTCTCTTCGGATGACTCAAC
64 TAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGC
* * * * *
15781752 GCCCGCACTCTCATTTTGTGGGTTGACTTAT
128 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
** * *
15781783 GCATACAAAGTTCATTCCCAGACTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGATA
* * *
15781848 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGGCTCTCCGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCC
15781913 CGCACACTCGTTTCGTGGGTTGGCTTAG
131 CGCACACTCGTTTCGTGGGTTGGCTTAG
15781941 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15781968 CATATGGAGT
Statistics
Matches: 258, Mismatches: 79, Indels: 14
0.74 0.23 0.04
Matches are distributed among these distances:
157 6 0.02
158 133 0.52
159 116 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCC
CGCACACTCGTTTCGTGGGTTGGCTTAG
Done.