Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 128 of 402
Found at i:15781977 original size:26 final size:26
Alignment explanation
Indices: 15781941--15781993 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15781931 GTTGGCTTAG
*
15781941 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTACCA-GTCTAA
*
15781967 GCATATGGAGTTCACTACCAGTCTAA
1 GCATACGGAGTTCACTACCAGTCTAA
15781993 G
1 G
15781994 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTACCAGTCTAA
Found at i:15782526 original size:368 final size:354
Alignment explanation
Indices: 15782030--15782922 Score: 970
Period size: 355 Copynumber: 2.5 Consensus size: 354
15782020 AGTAGGACTA
** * * * *
15782030 GTAGCAGGATCGACAGCACGCAGGGAGGGATCGGGTCGATCCTCGGCTTGGCGCATTCTGCCTCT
1 GTAGCAGGATCGGTAGCAAGCA-GG-GGGATCGGGCCGATCCCCGGCTT-GTGCATTCTGCCTCT
*
15782095 CCGGCCGGCTGAGCTCCCGCACGCTCGTTTCAG-GGGTTGGCTTAGGCATACGGAGTTCATTCCA
63 CCGGCCGGCTGAGCACCCGCACGCTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* **
15782159 TGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGGTAACAGGATTAG-CAGCATGC
127 TGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACAGGA-TAGACAGCATGC
* *
15782223 AGAGAGGGATCGGGCTGATCC-CTGGCTTGCGTATTATACCTCTCCGGCCGACCTCTCTGGTCGG
191 AGAGAGGGATCGAGCTGATCCTC-GGCTTGCGCATTATACCTCT----CCGA----T-TGG-C--
* * * *
15782287 TTGAGC-ACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCGAAGTTCATCCCCAATCTAAG
243 -TGAGCGACC-GCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAG
* *
15782351 CATACGGATTTCATTCCTAG-TCTAAGATCGATCCAAATCGAGGGCTACG
306 CATACGGAGTTCATT-CTAGATCTAAGATCGAACCAAATCGAGGGCTACG
* * *
15782400 GTAGCAGGATCGGTAGCATGCAGGGGGAATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTC
1 GTAGCAGGATCGGTAGCAAGCAGGGGG-ATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC
* * * *
15782465 AGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
65 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * * * * *
15782530 CTAAGCCTTAGTCGGACCGAGGGTTGTGGTAACAGGACCGACAGCGGGATCGACAGCATGCAGAG
130 CTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACAGGATAGACAGCATGCAGAG
* * * * *
15782595 GGGGATCGAGCTGATCCTCGGCTTGCGCATTATGCGTCTCCGATTGGCTGAGCGTCCGCACATTC
195 AGGGATCGAGCTGATCCTCGGCTTGCGCATTATACCTCTCCGATTGGCTGAGCGACCGCACACTC
* ** * *
15782660 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCTCG
260 ATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTAG
** *
15782725 ATCTAAGATCGAACCGGATCGAGGGTTACG
325 ATCTAAGATCGAACCAAATCGAGGGCTACG
** * * * * *
15782755 ACAGCAAGATCGGTAGCAAGCAGGAGGGACCGAGCC-AGTCCCCGGCTTATGCATTTTGCCTCTC
1 GTAGCAGGATCGGTAGCAAGCAGG-GGGATCGGGCCGA-TCCCCGGCTTGTGCATTCTGCCTCTC
* ** * * * *
15782819 CGGTCGTTTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATG
64 CGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* *
15782884 TCTAAGCCCTAGCCAAACCGAGGGTTGTGGCAGCGGGAC
129 TCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCAGGAC
15782923 TTGCAGCACG
Statistics
Matches: 443, Mismatches: 72, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
354 4 0.01
355 223 0.50
356 5 0.01
358 1 0.00
359 3 0.01
360 1 0.00
364 4 0.01
367 3 0.01
368 159 0.36
369 21 0.05
370 19 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (354 bp):
GTAGCAGGATCGGTAGCAAGCAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCG
GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAACAGGATAGACAGCATGCAGAGA
GGGATCGAGCTGATCCTCGGCTTGCGCATTATACCTCTCCGATTGGCTGAGCGACCGCACACTCA
TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTAGA
TCTAAGATCGAACCAAATCGAGGGCTACG
Found at i:15783232 original size:26 final size:26
Alignment explanation
Indices: 15783180--15783232 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15783170 GTTGACTTAG
*
15783180 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTATAA
15783206 GCATATGGAGTTCATTCCCA-GTATAA
1 GCATATGGAGTTCATT-CCATGTATAA
15783232 G
1 G
15783233 ATCGGGTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTATAA
Found at i:15783876 original size:159 final size:158
Alignment explanation
Indices: 15783693--15784076 Score: 473
Period size: 158 Copynumber: 2.4 Consensus size: 158
15783683 CTCTCCGACT
* *
15783693 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** *
15783758 GCCCCAGCTGGACCGAGGGTTGT-GGCAGCAGGACCGACAGCATGCAGAGGGGGACCAGACCGAT
66 GCCCCAGCCAGACCGAGGGTT-TCGACAGCAGGACCGACAGCATGCAG-GGGGGACCAGACCGAT
*
15783822 CCCCGTCTTGTGCATGATGCCTCTTCAGCC
129 CCCCGACTTGTGCATGATGCCTCTTCAGCC
* * * * * ** *
15783852 GGCTCAGCTCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACAAAGTTCATTCCCTGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * * ** * ***
15783917 GATCGAGCCAGACCGAGGGTTTCGATAGTAGGATTGACAGCATGCAGGGGGGACCGGGTTGATCC
66 GCCCCAGCCAGACCGAGGGTTTCGACAGCAGGACCGACAGCATGCAGGGGGGACCAGACCGATCC
** * *
15783982 CCGACTTGTGCATTCTGCCTCTTCGGTC
131 CCGACTTGTGCATGATGCCTCTTCAGCC
*
15784010 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15784075 GC
66 GC
15784077 ATATGGAGTT
Statistics
Matches: 185, Mismatches: 39, Indels: 3
0.81 0.17 0.01
Matches are distributed among these distances:
158 95 0.51
159 90 0.49
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTTCGACAGCAGGACCGACAGCATGCAGGGGGGACCAGACCGATCC
CCGACTTGTGCATGATGCCTCTTCAGCC
Found at i:15784040 original size:158 final size:158
Alignment explanation
Indices: 15783652--15784075 Score: 494
Period size: 159 Copynumber: 2.7 Consensus size: 158
15783642 CGTAAGAGGC
* * * *
15783652 ACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTC-TCCGACTGGCTGAGCGCCCGCACGCCCGTT
1 ACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCAGAC-GGCTGAGCGCCCGCACGCTCGTT
* * **
15783716 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGT
65 TCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTGT
*
15783781 GGCAGCAGGACCGACAGCATGCAGAGGGGG
129 GACAGCAGGACCGACAGCATGCAGAGGGGG
* * * * ** * * * *
15783811 ACCAGACCGATCCCCGTCTTGTGCATGATGCCTCTTCAGCCGGCTCAGCTCCCGCACACTCGTTT
1 ACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCAGACGGCTGAGCGCCCGCACGCTCGTTT
* ** * * *
15783876 CGTGGGTTGACTTATGCATACAAAGTTCATTCCCTGTCTAAGATCGAGCCAGACCGAGGGTT-TC
66 CGTGGGTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTGT-
* * **
15783940 GATAGTAGGATTGACAGCATGCAG-GGGGG
129 GACAGCAGGACCGACAGCATGCAGAGGGGG
* * *
15783969 ACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTT
1 ACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCAGACGGCTGAGCGCCCGCACGCTCGTTT
15784034 CGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 CGTGGG-TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15784076 CATATGGAGT
Statistics
Matches: 217, Mismatches: 44, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
158 94 0.43
159 119 0.55
160 4 0.02
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.25
Consensus pattern (158 bp):
ACCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTTCAGACGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTGTGA
CAGCAGGACCGACAGCATGCAGAGGGGG
Found at i:15784085 original size:26 final size:26
Alignment explanation
Indices: 15784049--15784101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15784039 GTTTGCTTAG
15784049 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15784075 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15784101 G
1 G
15784102 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15784720 original size:881 final size:877
Alignment explanation
Indices: 15782405--15785670 Score: 3699
Period size: 881 Copynumber: 3.7 Consensus size: 877
15782395 CTACGGTAGC
* * * * * *
15782405 AGGATCGGTAGCATGCAGG-GGGAATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTTCAGCC
1 AGGATAGGCAGCATCCAGGAGGG-ATCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGGCC
* * * ** *
15782469 GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTA
65 GACTGAGCACCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTA
** * * * * *
15782533 AGCCTTAGTCGGACCGAGGGTTGTGGTAACAGGACCGACAGCGGGATCGACAGCATGCAGAGGGG
129 AGCCCCAGTCGGACCGAGGGTTGTCGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGG
* * * * * * * * * *
15782598 GATCGAGCTGATCCTCGGCTTGCGCATTATGCGTCTCCGAT----T----GGCTGAGCGTCCGCA
194 GACCGGGCTAATCCCCGTCTTACGCATTATGCCTCTCCGGTCGGCTGACCGGCTGAGCGCCCACA
** ** * * * *
15782655 CATTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCGTAGTCTAAGCATACGGAGTTCA
259 CGCTCATTTCATGGGTTGACTTAGGCATACAAAGCTCATCCCG-AATCCAAGCATACAGAGTTCA
* * ** * * *
15782719 TTCTC-GATCTAAGATCGAAC-CGGATCGAGGGTTACGACAGCAAGATCGGTAGCAAGCAGGAGG
323 TTCCCAG-TCTAAGATCG-ACTCGGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGAAGGAGG
* * * * * *
15782782 GACCGAGCCAGTCCCCGGCTTATGCATTTTGCCTCTCCG-GTCGTTTGAGCACCCGCATGCCCGT
386 GACCGAGCCAATCCCCGGCTTATGCATTCTGCCTCTCCGACTCGGTTGAGCACCCGAACGCCCGT
* * * * ***
15782846 TTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGGTTG
451 TTCGAGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTG
* * * * ** * * * *
15782911 TGGCAGCGGGACTTG-CAGCACGCAAAGGGGGATCAGGTCGATCCTCGCCTTACGCATTATGCCT
516 TGGCAGCAGGAC-CGACAGCACGCAGAGGGGGACCAGACCGATCCCCGTCTTGCGCATGATGCCT
** * **
15782975 CTTCGATCGACTCAG-TGCCCGCACACTCGTTTCATGGGCTGACTTATGCATACGGAGTTCATTC
580 CTTCGGCCGACTCAGCT-CCCGCACACTCGTTTCATGGGTTGACTTATGCATACAAAGTTCATTC
* ** * * * * * *
15783039 CCAGAGTAAGATCG-GACCGGACCGAAGGTTGC-AGTAGTAGGATTGACAGCACGTAGGGGGGAT
644 CCTGTCTAAGATCGAG-CCAGACCGAGGGTTTCGA-TAGTAGGATTGACAGCATGCAGGGGGGAC
* ** * * * * * * *
15783102 CAGGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCTGGCCGGCTGAACGCCCGTACGCTCTTTTC
707 CGGGTTGATCCCCGACTTGTGCATTCTGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCTCGTTTC
* *
15783166 GTGGG-TTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTAT
771 GTGGGTTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCT
* * * * * * **
15783230 AAGATCGGGTCAGATCGAGGGTTGTGGCAGTAGGACCAGCAAC
835 AAGATCAGATCAGACCGAAGGTTGTGACGGTAGGACCAGCAGT
* * ** * * * *
15783273 AGGATCGACAGCATGGAGGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTC
1 AGGATAGGCAGCATCCA-GGAGGGATCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGGCC
* * * ** * **
15783338 GACGGAGCGCCCGTACGCTCGTTTCAGGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAA
65 GACTGAGCACCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
** * * * * * * * *
15783403 GCCCCAACCGGACTGAGGGTTGTGGTAGCAGAACCGGTAGCAGGATCGACAGCACGCAGAGGGGG
130 GCCCCAGTCGGACCGAGGGTTGTCGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGG
* * * * * * * *
15783468 ATCGGGTTGATCCTCGACTTACGCATTATGCCTCT----TC-G--G-CCGGTTGAACGCCCGCAC
195 ACCGGGCTAATCCCCGTCTTACGCATTATGCCTCTCCGGTCGGCTGACCGGCTGAGCGCCCACAC
* * * * ** * * * *
15783525 GTTCATTTCGTGGGTTGACTT-GTGTAGATGAAGTTCATCCCCAATCTAAGCATACGGAGTTCAT
260 GCTCATTTCATGGGTTGACTTAG-GCATACAAAGCTCATCCCGAATCCAAGCATACAGAGTTCAT
** * * * * * * *
15783589 TCTTAGTCTAAGATC-AATCCAGACCAAGGGTTGCGGGAGCAAGATCGGTAGCACGTAA-GAGGC
324 TCCCAGTCTAAGATCGACT-CGGACCGAGGGTTACGGTAGCAAGATCGGCAGCACG-AAGGAGGG
* ** * * * * *
15783652 ACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCCCGTT
387 ACCGAGCCAATCCCCGGCTTATGCATTCTGCCTCTCCGACTCGGTTGAGCACCCGAACGCCCGTT
* *
15783716 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGT
452 TCGAGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGT
* *
15783781 GGCAGCAGGACCGACAGCATGCAGAGGGGGACCAGACCGATCCCCGTCTTGTGCATGATGCCTCT
517 GGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGTCTTGCGCATGATGCCTCT
* * *
15783846 TCAGCCGGCTCAGCTCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACAAAGTTCATTCCCT
582 TCGGCCGACTCAGCTCCCGCACACTCGTTTCATGGGTTGACTTATGCATACAAAGTTCATTCCCT
15783911 GTCTAAGATCGAGCCAGACCGAGGGTTTCGATAGTAGGATTGACAGCATGCAGGGGGGACCGGGT
647 GTCTAAGATCGAGCCAGACCGAGGGTTTCGATAGTAGGATTGACAGCATGCAGGGGGGACCGGGT
15783976 TGATCCCCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
712 TGATCCCCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
15784041 TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
777 TTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
*
15784106 GATCAGACCGAAGGTTGTGATGGTAGGACCAGCAGT
842 GATCAGACCGAAGGTTGTGACGGTAGGACCAGCAGT
* *
15784142 AGGATAGGCAGCATCCAGGAGGGATCGGGCC-AGTCCCCGGCTTATGTATTCTGCCTCTTTGGCC
1 AGGATAGGCAGCATCCAGGAGGGATCGGGCCGA-TCCCCGGCTTATGCATTCTGCCTCTTCGGCC
15784206 GACTGAGCACCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
65 GACTGAGCACCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * **
15784271 GCCCCAGTTGGACCGAGGGTTGTCGCAGTAGGACTGGCAGCGGGATCGGTAGCATGCAAAGGGGG
130 GCCCCAGTCGGACCGAGGGTTGTCGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGG
*
15784336 ACCGGGCTAATCCCCGTCTTGCGCATTATGCCTCTCCGGTCGGCCTCTCCGACCGGCTGAGCGCC
195 ACCGGGCTAATCCCCGTCTTACGCATTATGCCTCTCCGGTCGG---CT--GACCGGCTGAGCGCC
* * *
15784401 TACACGCTCATTTTATGGGTTGACTTGGGCATACAAAGCTCATCCCGAATCCAAGCATACAGAGT
255 CACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGCTCATCCCGAATCCAAGCATACAGAGT
* * * * *
15784466 TCATTCCCAGTTTAAGATCGACTCGGACCGAGGGTTACGGTAGTAGGATTGGCAGCACGAAGGGG
320 TCATTCCCAGTCTAAGATCGACTCGGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGAAGGAG
** * * * *
15784531 GGACCGAGCCAATCCCCGGCTTGCGTATTCTACCTCTCCGACT-GGTTGAGCACCCGAACGTCTG
385 GGACCGAGCCAATCCCCGGCTTATGCATTCTGCCTCTCCGACTCGGTTGAGCACCCGAACGCCCG
* *
15784595 TTTTGAGGGTTGGCTGAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
450 TTTCGAGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
* * *
15784660 GTGGCAGCAGGACCGACAGCATGCAGAGGGGGACCAGACCAATCCCCGTCTTGGGCATGATGCCT
515 GTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGTCTTGCGCATGATGCCT
* * * *
15784725 CTTCGGTCGGCTCAGCTCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCC
580 CTTCGGCCGACTCAGCTCCCGCACACTCGTTTCATGGGTTGACTTATGCATACAAAGTTCATTCC
*
15784790 ATGTCTAAGATCGAGCCAGACCGAGGGTTTCGATAGTAGGATTGACAGCATGCAGGGGGGACCGG
645 CTGTCTAAGATCGAGCCAGACCGAGGGTTTCGATAGTAGGATTGACAGCATGCAGGGGGGACCGG
* * *
15784855 GTTGATCCCCGACTTGTGCATTCTGCCTTTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGG
710 GTTGATCCCCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
15784920 GTTTGTTTAGGCATACGGAGTTCATTCCATGTCTAACCATATAGAGTTCATTCCCAGTCTAAGAT
775 GTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
* *
15784985 CAGATCAAACCGAAGGTTGTGACGGTAGGACTAGCAGT
840 CAGATCAGACCGAAGGTTGTGACGGTAGGACCAGCAGT
* ** * * *
15785023 AGGATAGGCAGTATCCAGGAGGGATCGATCC-AGTCCCCGGCTTATGTATTCTGCCTTTTTGGCC
1 AGGATAGGCAGCATCCAGGAGGGATCGGGCCGA-TCCCCGGCTTATGCATTCTGCCTCTTCGGCC
15785087 GACTGAGCACCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
65 GACTGAGCACCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * **
15785152 GCCCCAGTTGGACCGAGGGTTGTCGCAGTAGGACTGGCAGCGGGATCGGTAGCATGCAAAGGGGG
130 GCCCCAGTCGGACCGAGGGTTGTCGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGG
* * **
15785217 ACCGGGCTAATCCCCGTTTTACGCATTATGCCTCTCCGGCCGGCCTCTCCGACCGATTGAGCGCC
195 ACCGGGCTAATCCCCGTCTTACGCATTATGCCTCTCCGGTCGG---CT--GACCGGCTGAGCGCC
** * *** *
15785282 CGTACGCTCATTTTATGGGTTGACTTAGGCATACAAAGCTCATCTAAAATCCAAGCATACAAAGT
255 CACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGCTCATCCCGAATCCAAGCATACAGAGT
* * * * * * *
15785347 TCATTCCCAATCTAAGATCGACCCGGACCGAGGGTTGCGGTAGTAGGATTGGCAGCACGAAGGGG
320 TCATTCCCAGTCTAAGATCGACTCGGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGAAGGAG
* * * * *
15785412 GGACCGAGCCGATCCCCGGCTTATGTATTCTGCCTCTCCGA-TCGGTTGAGCACCCGACCGTCTG
385 GGACCGAGCCAATCCCCGGCTTATGCATTCTGCCTCTCCGACTCGGTTGAGCACCCGAACGCCCG
*
15785476 TATT-AAGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGT
450 T-TTCGAGGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGT
* * * * * * *
15785540 TGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCTGATCCTCGTCTTGCGCATTATGCC
514 TGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGTCTTGCGCATGATGCC
* * * ** *
15785605 TCTTCGGCCGACTGAGCGCCCGTACGTTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTC
579 TCTTCGGCCGACTCAGCTCCCGCACACTCGTTTCATGGGTTGACTTATGCATACAAAGTTCATTC
15785670 C
644 C
15785671 TAGGCTCGGC
Statistics
Matches: 2091, Mismatches: 267, Indels: 67
0.86 0.11 0.03
Matches are distributed among these distances:
865 1 0.00
867 2 0.00
868 191 0.09
869 707 0.34
870 16 0.01
872 2 0.00
873 1 0.00
880 4 0.00
881 1162 0.56
882 5 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (877 bp):
AGGATAGGCAGCATCCAGGAGGGATCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTTCGGCCG
ACTGAGCACCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
CCCCAGTCGGACCGAGGGTTGTCGCAGCAGGACCGGCAGCGGGATCGACAGCATGCAAAGGGGGA
CCGGGCTAATCCCCGTCTTACGCATTATGCCTCTCCGGTCGGCTGACCGGCTGAGCGCCCACACG
CTCATTTCATGGGTTGACTTAGGCATACAAAGCTCATCCCGAATCCAAGCATACAGAGTTCATTC
CCAGTCTAAGATCGACTCGGACCGAGGGTTACGGTAGCAAGATCGGCAGCACGAAGGAGGGACCG
AGCCAATCCCCGGCTTATGCATTCTGCCTCTCCGACTCGGTTGAGCACCCGAACGCCCGTTTCGA
GGGTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCA
GCAGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGTCTTGCGCATGATGCCTCTTCGG
CCGACTCAGCTCCCGCACACTCGTTTCATGGGTTGACTTATGCATACAAAGTTCATTCCCTGTCT
AAGATCGAGCCAGACCGAGGGTTTCGATAGTAGGATTGACAGCATGCAGGGGGGACCGGGTTGAT
CCCCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATC
AGACCGAAGGTTGTGACGGTAGGACCAGCAGT
Found at i:15784934 original size:158 final size:158
Alignment explanation
Indices: 15784455--15784955 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 158
15784445 CCGAATCCAA
* *
15784455 GCATAC-AGAGTTCATTCCCA-GTTTAAGATCGA-CTCGGACCGAGGGTTACGGTAGTAGGATTG
1 GCATACGA-AGTTCATT-CCATGTCTAAGATCGAGC-CGGACCGAGGGTTTCGGTAGTAGGATTG
* * * * * * * * *
15784517 GCAGCACGAAGGGGGGACCGAGCCAATCCCCGGCTTGCGTATTCTACCTCTCCGA-CTGGTTGAG
63 ACAGCATGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTTCGATC-GGCTGAG
* * * *
15784581 CACCCGAACG-TCTGTTTTGA-GGGTTGGCTGAG
127 CACCCGCACGCTC-G-TTTCATGGGTTTGCTTAG
* * ** * * * * **
15784613 GCATAGGCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGT-GGCAGCAGGACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAGATCGAGCCGGACCGAGGGTT-TCGGTAGTAGGATTGAC
* * * * ** * * *
15784677 AGCATGCAGAGGGGGACCAGACCAATCCCCGTCTTGGGCATGATGCCTCTTCGGTCGGCTCAGCT
65 AGCATGCAG-GGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCA
* * *
15784742 CCCGCACACTCGTTTCGTGGG-TTGACTTAT
129 CCCGCACGCTCGTTTCATGGGTTTG-CTTAG
* *
15784772 GCATACGAAGTTCATTCCATGTCTAAGATCGAGCCAGACCGAGGGTTTCGATAGTAGGATTGACA
1 GCATACGAAGTTCATTCCATGTCTAAGATCGAGCCGGACCGAGGGTTTCGGTAGTAGGATTGACA
*** * * *
15784837 GCATGCAGGGGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTTTTCGATCGGCTGAGCGCC
66 GCATGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACC
*
15784902 CGCACGCTCGTTTCATGGGTTTGTTTAG
131 CGCACGCTCGTTTCATGGGTTTGCTTAG
*
15784930 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
15784956 CCATATAGAG
Statistics
Matches: 266, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 145 0.55
159 115 0.43
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCGAGCCGGACCGAGGGTTTCGGTAGTAGGATTGACA
GCATGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTTGCTTAG
Found at i:15786322 original size:26 final size:26
Alignment explanation
Indices: 15786282--15786334 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15786272 GTTGACTTAG
15786282 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* * *
15786308 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
15786334 G
1 G
15786335 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:15786811 original size:26 final size:26
Alignment explanation
Indices: 15786782--15786834 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15786772 GTTGGCTTAG
*
15786782 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15786808 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15786834 G
1 G
15786835 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15787165 original size:26 final size:26
Alignment explanation
Indices: 15787129--15787203 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
15787119 GTTGACTTAG
15787129 GCATATGGAGTTCATCCCCAGTCCAA
1 GCATATGGAGTTCATCCCCAGTCCAA
15787155 GCATATGGAGTTCATCCCCAGTCCAA
1 GCATATGGAGTTCATCCCCAGTCCAA
*
15787181 GCATATGGAGTTCATTCCCAGTC
1 GCATATGGAGTTCATCCCCAGTC
15787204 TAAGATCGGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCCAA
Found at i:15787648 original size:158 final size:158
Alignment explanation
Indices: 15787181--15787682 Score: 534
Period size: 158 Copynumber: 3.2 Consensus size: 158
15787171 CCCAGTCCAA
* * * * * *
15787181 GCATATGGAGTTCATTCC-CAGTCTAAGATCGGACTGGACGGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * *
15787245 AGCATGCAGGGGGGACCGGGCCGGT-CCTCGGCTTACGCATTCTACCTC-TCTGGCCGGTTGAGC
65 AGCATGCAGGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTACCTCTTC-GGCCGGCTAAGC
*
15787308 -ACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 GA-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
15787339 GCATAGGGAGTTCATTCCACGTCTAAGCCCCAG-TCGGACCGAAGGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCACGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAG-GATCGA
* ** * * * *
15787402 CAGCATGCAGAGGTGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTTTGGTCGGCTCAGC
64 CAGCATGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGGCCGGCTAAGC
* * * * *
15787467 GCCCGTACGCTCGTTTCATGGGTTGACTTAT
128 GACCGCACGCTCGTTTCGTGGGTTGGCTTAG
15787498 GCATACGGAGTTCATTCTCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CACGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * *
15787562 AAG-ACGTAGGGGGGATTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTAAGCG
65 -AGCATGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGGCCGGCTAAGCG
15787626 ACCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 ACCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15787656 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCACGTCTAAG
15787683 CATACAGAGT
Statistics
Matches: 279, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 150 0.54
159 118 0.42
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCACGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCATGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGGCCGGCTAAGCGAC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15787692 original size:26 final size:26
Alignment explanation
Indices: 15787656--15787708 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15787646 GTTGGCTTAG
*
15787656 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15787682 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15787708 G
1 G
15787709 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15788392 original size:26 final size:26
Alignment explanation
Indices: 15788356--15788408 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15788346 GTTGACTTAG
15788356 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15788382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15788408 G
1 G
15788409 ATTGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15789131 original size:26 final size:26
Alignment explanation
Indices: 15789102--15789154 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15789092 GTTGACTTAG
15789102 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15789128 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15789154 G
1 G
15789155 ATTGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15789737 original size:746 final size:747
Alignment explanation
Indices: 15788305--15790221 Score: 2982
Period size: 746 Copynumber: 2.6 Consensus size: 747
15788295 TGCGCATCCT
* *
15788305 GCCTCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
15788370 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAAATCAAGGGTTACGGCA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATTGAACCAAATCAAGGGTTACGGCA
* *
15788435 GTAGGATTGGCAGCACCCAGGGGGGACTAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGC
131 GTAGGATTGACAGCACCCAGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGC
15788500 CCGCTGAGTGCCTGCACGCCTGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
196 CCGCTGAGTGCCTGCACGCCTGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*
15788565 AGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCGACAACACGTAGAGGGGGATCGAGCCGAT
261 AGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGAACCGACAACACGTAGAGGGGGATCGAGCCGAT
15788630 CTCAGTTTGCACATTTTGCCTCTCTGACCAGTTGAACGACCGCACGCTCGTTTCGTGGGTTGACT
326 CTCAGTTTGCACATTTTGCCTCTCTGACCAGTTGAACGACCGCACGCTCGTTTCGTGGGTTGACT
* * *
15788695 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGTATCG
391 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTGCGATAGTAGTATCG
*
15788760 AAGCACGCAGGAGGGGACCGGAGTTCATTCCTGTGTGCTTCGATACTGCTGTCGCAACCCTCGAT
456 AAGCACGCAAGAGGGGACCGGAGTTCATTCCTGTGTGCTTCGATACTGCTGTCGCAACCCTCGAT
15788825 CCAGTCCGATCTTACACTGGCAGGTCCCCGGCTTGCTTATTCTGCCTCTCTGGCCAGCTGAGTGC
521 CCAGTCCGATCTTACACTGGCAGGTCCCCGGCTTGCTTATTCTGCCTCTCTGGCCAGCTGAGTGC
* *
15788890 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGGGTTTATTCCATGTCTAAGGCTCAGTCG
586 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGGGTTTATTCCATGTCTAAGCCCCAGTCG
* * *
15788955 GATCGAGGGTTGTGGCAGCAGGATCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCG-GCAGC
651 GATCGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCAG-
*
15789019 A-CGCCGGCTTGTGCATTATGCCTCTCTGGCCG
715 ATCCCCGGCTTGTGCATTATGCCTCTCTGGCCG
* *
15789051 GCCTCTCCAGTCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
15789116 TCCCCAGTCTAAGCATACTGAGTTCATTCCTAGTCTAAGATTGAACCAAATCAAGGGTTACGGCA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATTGAACCAAATCAAGGGTTACGGCA
15789181 GTAGGATTGACAGCACCCAGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGC
131 GTAGGATTGACAGCACCCAGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGC
* *
15789246 CCGCTGAGCGCTTGCACGCCTGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
196 CCGCTGAGTGCCTGCACGCCTGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*
15789311 AGCCCCAGTCAGACAGAGGGTTGTGGCAGCGGAACCGACAACACGTAGAGGGGGATCGAGCCGAT
261 AGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGAACCGACAACACGTAGAGGGGGATCGAGCCGAT
15789376 CTCAGTTTGCACATTTTGCCTCTCTGACCAGTTGAACGACCGCACGCTCGTTTCGTGGGTTGACT
326 CTCAGTTTGCACATTTTGCCTCTCTGACCAGTTGAACGACCGCACGCTCGTTTCGTGGGTTGACT
15789441 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTGCGATAGTAGTATCG
391 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTGCGATAGTAGTATCG
*
15789506 AAGCACGTAAGAGGGGACCGGAGTTCATTCCTGTGTGCTTCGATACTGCTGTCGCAACCCTCGAT
456 AAGCACGCAAGAGGGGACCGGAGTTCATTCCTGTGTGCTTCGATACTGCTGTCGCAACCCTCGAT
15789571 CCAGTCCGATCTTACACTGGCAGGTCCCCGGCTTGCTTATTCTGCCTCTCTGGCCAGCTGAGTGC
521 CCAGTCCGATCTTACACTGGCAGGTCCCCGGCTTGCTTATTCTGCCTCTCTGGCCAGCTGAGTGC
15789636 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGGGTTTATTCCATGTCTAAGCCCCAGTCG
586 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGGGTTTATTCCATGTCTAAGCCCCAGTCG
** *
15789701 GATCGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGGTAGCACGCAGAGGGGGACCGAGCTGA
651 GATCGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCAGA
15789766 TCCCCGGCTTGTGCATTATGCCTCTCTGGCCG
716 TCCCCGGCTTGTGCATTATGCCTCTCTGGCCG
* *
15789798 GCCTCTCCGGTCGGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * ** * * * *
15789863 TCCGCAGTCTAACCATACAGAGTTCATT-CTCAGTCCAAGATCGGATTAGA-CTGAGGGTTGCAG
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCT-AGTCTAAGATTGAACCAAATC-AAGGGTTACGG
* * * *** * * * ** * *
15789926 CAGCAGGATCAGCCA-CAAGAAAGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCC
129 CAGTAGGAT-TGACAGCACCCAGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * * * * *
15789990 AGTCGGCTGAGTGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGAGAGTTCATTCCATGT
193 AGCCCGCTGAGTGCCTGCACGCCTGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * * *
15790055 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGAAACGACAGCACGTAGAGGGGGACCGGGTC
258 CTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGAACCGACAACACGTAGAGGGGGATCGAGCC
* * * * * * * * * **** * * *
15790120 GGTCCCCGACTTGCGCATTATT-ACTCTCTGACCGGCTCAGTTCCCGCACACTCATTTCATGGGT
323 GATCTCAG-TTTGCACATT-TTGCCTCTCTGACCAGTTGAACGACCGCACGCTCGTTTCGTGGGT
15790184 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
386 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
15790222 GGATCGGATC
Statistics
Matches: 1075, Mismatches: 89, Indels: 12
0.91 0.08 0.01
Matches are distributed among these distances:
746 689 0.64
747 304 0.28
748 80 0.07
749 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (747 bp):
GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATTGAACCAAATCAAGGGTTACGGCA
GTAGGATTGACAGCACCCAGGGGGGACCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGC
CCGCTGAGTGCCTGCACGCCTGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGAACCGACAACACGTAGAGGGGGATCGAGCCGAT
CTCAGTTTGCACATTTTGCCTCTCTGACCAGTTGAACGACCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTGCGATAGTAGTATCG
AAGCACGCAAGAGGGGACCGGAGTTCATTCCTGTGTGCTTCGATACTGCTGTCGCAACCCTCGAT
CCAGTCCGATCTTACACTGGCAGGTCCCCGGCTTGCTTATTCTGCCTCTCTGGCCAGCTGAGTGC
CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGGGTTTATTCCATGTCTAAGCCCCAGTCG
GATCGAGGGTTGTGGCAGCAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCAGA
TCCCCGGCTTGTGCATTATGCCTCTCTGGCCG
Found at i:15791088 original size:26 final size:26
Alignment explanation
Indices: 15791058--15791110 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15791048 GTTGACTTAG
* *
15791058 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
*
15791084 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
15791110 G
1 G
15791111 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGACTTCATCCCCAGTCTAA
Found at i:15791401 original size:159 final size:159
Alignment explanation
Indices: 15791084--15791588 Score: 545
Period size: 159 Copynumber: 3.2 Consensus size: 159
15791074 CCCAGTCTAA
* * ** ** * * *
15791084 GCATACAGACTTCATTCCCA-GTCTAAG-ATTAGACCGGACCGAGGGTTGCCGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAACAGGACCGA
* * * * * * * ** *
15791147 CAGCACGCAGGAGGGACCGAGCCGATCCTCGGCTTACGCATTCTACCACTCCGGTCGGCTGAGTG
65 CAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCG
* *
15791212 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15791242 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAACGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAACAGGACCGAC
* * * *
15791306 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTAGCCGGCTCAGCA
66 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCG
* * *
15791371 CCCGCACGCTCATTTTGTGGGTTGACTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15791401 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAACAGGACCGA
** * * *
15791464 CAGCACATAGGGGGCGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCT-TCGATCGGCTGAG
65 CAGCACGCAGGGGG-GATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAG-TCGGCTGAG
*
15791528 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15791560 GCATACGAAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
15791589 TACAGAGTTC
Statistics
Matches: 285, Mismatches: 53, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 65 0.23
159 213 0.75
160 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAACAGGACCGAC
AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15791597 original size:26 final size:26
Alignment explanation
Indices: 15791560--15791612 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15791550 GTTGGCTTAG
15791560 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15791586 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
15791612 G
1 G
15791613 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15791896 original size:13 final size:13
Alignment explanation
Indices: 15791878--15791902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15791868 GCACATTATG
15791878 CCTCTCCGACCGA
1 CCTCTCCGACCGA
15791891 CCTCTCCGACCG
1 CCTCTCCGACCG
15791903 GCTGAGCGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.56, G:0.16, T:0.16
Consensus pattern (13 bp):
CCTCTCCGACCGA
Found at i:15791977 original size:26 final size:26
Alignment explanation
Indices: 15791941--15791991 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15791931 GATGACTTAG
*
15791941 GCATACGGAGTTCATCCCCAATCTAC
1 GCATACAGAGTTCATCCCCAATCTAC
*
15791967 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
15791992 AGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAC
Found at i:15792427 original size:26 final size:26
Alignment explanation
Indices: 15792391--15792443 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15792381 GTTGGCTTAC
*
15792391 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
15792417 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15792443 G
1 G
15792444 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15793144 original size:26 final size:26
Alignment explanation
Indices: 15793114--15793166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15793104 GTCGACTTAG
*
15793114 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15793140 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15793166 G
1 G
15793167 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15793433 original size:158 final size:158
Alignment explanation
Indices: 15793211--15794270 Score: 1109
Period size: 158 Copynumber: 6.7 Consensus size: 158
15793201 GATAGCACAT
* * ** *
15793211 AGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGC
* * *
15793276 TCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGAACCGAGGG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGG
* *
15793341 TTGTGGCAGCGGGACCAGCAGCACGCAG
131 TTGTAGCAGCAGGACCAGCAGCACGCAG
* * * * * * * *
15793369 AGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCTACACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGC
* ** * *
15793434 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-TCGGACCGAG
* * *
15793498 GGTTGTAGCTA-CAAGATCAACAGCACGCAG
129 GGTTGTAGC-AGCAGGACCAGCAGCACGCAG
* * * ** * * * * *
15793528 -GGGGGACCGGGCTGATCCCTGGTTTATGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCATGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGC
* * *
15793592 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCAGTCGGACCGAGGG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGG
* *
15793657 TTGTGGCAGCGGGACCAGCAGCACGCAG
131 TTGTAGCAGCAGGACCAGCAGCACGCAG
* * * * * *
15793685 AGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGGCCAGTTCAGCGCCTGCACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGC
* * ** * *
15793750 TCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACTGAG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGTC-GGACCGAG
*
15793814 GGTTGTAGCAGCAGGATC-GACAGCACGCAG
129 GGTTGTAGCAGCAGGACCAG-CAGCACGCAG
* * * * *
15793844 -GGGGGACCGAG-CAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGC
* * * *
15793907 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGATGG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGG
* ** *
15793972 TTGTGGCAGTGGGACCAGCAGCATGCAG
131 TTGTAGCAGCAGGACCAGCAGCACGCAG
** ** * * * *
15794000 AGGGGGACTAGGCCGATCCTTGACTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCTGCACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGC
* * ** * * *
15794065 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-TCGGACCGAG
* * * *
15794129 GGTTGTAGCAGCAAGATC-GATAGCA--CAT
129 GGTTGTAGCAGCAGGACCAG-CAGCACGCAG
* * * * *
15794157 AGGGGGACCGAGCCGATCCCCGGCTTGTGTATTCTGCCTCTCCGACCGCCTGAGCG-CTCGCACG
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCT-GCACG
* *
15794221 CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15794271 ATATGGAGTT
Statistics
Matches: 732, Mismatches: 152, Indels: 37
0.79 0.17 0.04
Matches are distributed among these distances:
156 38 0.05
157 220 0.30
158 378 0.52
159 95 0.13
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCTGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGG
TTGTAGCAGCAGGACCAGCAGCACGCAG
Found at i:15794017 original size:315 final size:315
Alignment explanation
Indices: 15793140--15794270 Score: 1631
Period size: 315 Copynumber: 3.6 Consensus size: 315
15793130 CCCAGTCTAA
* * * * * *
15793140 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTG-CGATAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAG-CAGCAAGATCGAC
* * *
15793204 AGCACATAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCC
65 AGCACACAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
15793269 CGCACGCTCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGAA
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
* *
15793334 CCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGA-TCGGGTCGATCCCCGACTTGCG
195 CCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACT-GGGCCGATCCCTGACTTGCG
* * *
15793398 CATTATGCCTCTCCGGTCGGCTCAACGCCTACACGCTCGTTTCGTGGGTTGACTTAG
259 CATTATGCCTCTCCGGCCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15793455 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCTA-CAAGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGC-AGCAAGATCGAC
* * * * * ** * *
15793519 AGCACGCAGGGGGGACCGGGCTGATCCCTGGTTTATGCATTCTGCCTCTCCGACCGGTTGAGCAC
65 AGCACACA-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
15793584 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCAGTCGG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGG
*
15793649 ACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCG
194 ACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACTGGGCCGATCCCTGACTTGCG
* *
15793714 CATTATGCCTCTCCGGCCAGTTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
259 CATTATGCCTCTCCGGCCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * *
15793771 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAAGATCGACA
* * ** *
15793836 GCACGCAGGGGGGACCGAG-CAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACACA-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
15793900 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
* * * * *
15793965 CCGATGGTTGTGGCAGTGGGACCAGCAGCATGCAGAGGGGGACTAGGCCGATCCTTGACTTGCGC
195 CCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACTGGGCCGATCCCTGACTTGCGC
*
15794030 ATTATGCCTCTCTGGCCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
260 ATTATGCCTCTCCGGCCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15794086 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAAGATCGACA
* * * * *
15794151 GCACATAGGGGGACCGAGCCGATCCCCGGCTTGTGTATTCTGCCTCTCCGACCGCCTGAGCGCTC
66 GCACACAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
* * * *
15794216 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
131 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15794271 ATATGGAGTT
Statistics
Matches: 725, Mismatches: 85, Indels: 12
0.88 0.10 0.01
Matches are distributed among these distances:
314 11 0.02
315 418 0.58
316 296 0.41
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAGCAGCAAGATCGACA
GCACACAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGAC
CGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACTGGGCCGATCCCTGACTTGCGCA
TTATGCCTCTCCGGCCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15794273 original size:26 final size:26
Alignment explanation
Indices: 15794243--15794295 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15794233 GTTGGCTTAG
15794243 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
* *
15794269 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15794295 G
1 G
15794296 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15794932 original size:158 final size:158
Alignment explanation
Indices: 15794465--15794966 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 158
15794455 CCTAGTCTAA
* * * * * **
15794465 GCATACGAAGTTCATTCCCTGTCTAAGATCGGACCGGTCTGAGGGTTG-CAGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGA-CAGTAGGATCGAC
* * * * * * * * * *
15794529 AGCACGCAGTGGGGACCGAGCCTATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGTGC
65 AGCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
* *
15794594 CCGCACGAC-AGTTTCGTGGGTTGGCTTAG
130 CTGCAC-ACTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
15794623 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGTGACAGTAGGATCGAC
* * * * * * * *
15794687 AGCACGCAGAGGGGCATTAGGTCGATCCCTGGCTTACGCATTATGCCTCTCCGGGCAGCTCAACG
65 AGCACGCAG-GGGGGACTGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCG
* * * * * *
15794752 CCTGTACGCTCATTTTGTGGGTTGACTTAT
129 CCTGCACACTCGTTTCGTGGGTTGGCTTAG
* * *
15794782 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGTGACAGTAGTATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGTAGGATCGAC
* *** *
15794846 AGCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGTGCATTATGCCTCTCCTTTCGGTTGAGCGC
65 AGCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
15794911 CTGCACACTCGTTTCGTGGGTTGGCTTAG
130 CTGCACACTCGTTTCGTGGGTTGGCTTAG
*
15794940 GCGTACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15794967 CATACAGAGT
Statistics
Matches: 264, Mismatches: 73, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 3 0.01
158 146 0.55
159 112 0.42
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGTAGGATCGACA
GCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
TGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:15795753 original size:159 final size:157
Alignment explanation
Indices: 15795347--15795847 Score: 381
Period size: 159 Copynumber: 3.2 Consensus size: 157
15795337 CCCAGTCTAA
* * * ** *
15795347 GCATAC-AGAGTTTATTCCCAATCTAAGATCAGATCGGACTGAGGGTTACGGTAGCAGGATCGGT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * * * * *
15795411 AGCACGA-GGGGGATCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTTCGATCGGCTAAGCGCC
65 AGCACCAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTTCGACCGACTAAGCACC
** *
15795475 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCAATTTCGTGGGTTGACTTAG
* * ** * * * * * * *
15795503 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTA-ACCGGACCGAAGTTTGTGGCAACGGGATTGG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGTAGCAGGATCGG
** * *
15795566 CAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTATGCCTC-TCTGGCCGACTCAG
64 CAGCAC-CAG-GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTTC-GACCGACTAAG
* *
15795630 CACCCGCACGCTAATTTTGTGGGTTGACTTAG
126 CACCCGCACGCCAATTTCGTGGGTTGACTTAG
*
15795662 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
* * * * * * * *** *
15795727 GCACATAGGGGGCGACCGGG-TCGATCCTCGACTTACGCATTCTACCTC-TCCAATTAGCTGAGC
66 GCAC-CAGGGGG-GATCGGGCT-GATCCCCGGCTTACGCATTATGCCTCTTCGACCGA-CTAAGC
* * * *
15795790 GCCTGCACACTC-ATTTCGTGGGTTGGCTTAG
127 ACCCGCACGC-CAATTTCGTGGGTTGACTTAG
*
15795821 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
15795848 CATACAGAGT
Statistics
Matches: 264, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
155 3 0.01
156 45 0.17
157 2 0.01
158 12 0.05
159 199 0.75
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
GCACCAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTTCGACCGACTAAGCACCC
GCACGCCAATTTCGTGGGTTGACTTAG
Found at i:15795857 original size:26 final size:26
Alignment explanation
Indices: 15795821--15795873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15795811 GTTGGCTTAG
*
15795821 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15795847 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15795873 G
1 G
15795874 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15796017 original size:880 final size:878
Alignment explanation
Indices: 15794412--15796755 Score: 2801
Period size: 880 Copynumber: 2.7 Consensus size: 878
15794402 TTGGGCACCC
* * *
15794412 GCACGCTCGTTTCGTGGGTTGACATAGG-TATAAGGAGTTCATCCCTAGTCTAAGCATAC-GAAG
1 GCACGCTCGTTTCGTGGGTTGACTTAGGAT-TACGGAGTTCATCCCCAGTCTAAGCATACAG-AG
** * * * * *
15794475 TTCATTCCCTGTCTAAGATCGGACCGGTCTGAGGGTTGCAGCAACAGGATCGACAGCACGCAGTG
64 TTCATTCCCAATCTAAGATC-GAACGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACG-AG-G
* * ** * * *
15794540 GGGACCGAGCCT-ATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGACA
126 GGGACC-AGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCC
* *
15794604 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCGGACCGAGGGT
190 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGT
* * ** * *
15794669 TGTGGCAGTGGGACCGACAGCACGCAGAGGGGCATTAGGTCGATCCCTGGCTTACGCATTATGCC
255 TGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCC
* * * * *
15794734 TCTCCGGGC-AGCTCAACGCCTGTACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATT
320 TCTCTGGCCGA-CTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATT
* * * * * * * * *
15794798 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGTAGTATCGATAGCACGCAGGGGGGACT
384 CCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACC
* * * * *
15794863 GGGTCGATCC-CTGGCTTGTGCATTATGCCTCTCCTTTCGGTTGAGCGCCTGCACACTCGTTTCG
449 GGGTCGATCCTC-GGCTTGCGCATTCTACCTCTCCATT-GGCTGAGCGCCTGCACACTCGTTTCG
* * *
15794927 TGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCTAATCTAA
512 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * ** * * *
15794992 GATCGGACCGGACCAAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGACAGCATGCAGAGGGGG
577 GATCAGACCGAACCAAGGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * * * *
15795057 ACCAGGCCGATCCCCGACTTACTCATTCTACCTCTCTGATCGGCTGAGCGCCCGCATGCTCGTTT
642 ACCAAGCCGATCCCCGACTTACACATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCTCATTT
**
15795122 CATGGGTTGGCTTAGGCAT-ACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGATTGTTCT
707 CATGGGTTGGCTTAGGC-TGACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTCT
* ** * * * * * *
15795186 TGCAGTACGACCGGTAGCTGGATTGACAGCACGCAG-AGGGAGACCGGGCTGATCCTCGGCTTTC
771 GGCAGTACGACCGACAACGGGATCGACAACACACAGAAGGG-GACCGGGCTGATCCTCGGCTTGC
**
15795250 GTATTATGCCTCT-TCGACCGGCCTCTCCGATCGACTGAGCGCCT
835 ACATTATGCCTCTCT-GACCGGCCTCTCCGATCGACTGAGCGCCT
*
15795294 GCACGCTCCTTTCGTGGGTTGACTTAGGATTACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGATTACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* * * **
15795359 TATTCCCAATCTAAGATCAGATCGGACTGAGGGTTACGGTAGCAGGATCGGTAGCACGAGGGGGA
66 CATTCCCAATCTAAGATC-GAACGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGAGGGGGA
* * * * * *
15795424 TCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTTCGATCGGCTAAGCGCCCGCACGCCCGTTTC
130 CCAGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTC
** * *
15795489 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCGAAGTTTGTGG
195 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGG
* ** * *
15795554 CAACGGGATTGGCAGCACGCAGAGGGGGATCGGG-CTGATCCCCGGCTTGTGCATTATGCCTCTC
260 CAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTC
* * * *
15795618 TGGCCGACTCAGCACCCGCACGCTAATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
324 TGGCCGACTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAG
* *
15795683 TCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACATAGGGGGCGACCGGGT
389 TCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGG-GACCGGGT
* * * *
15795748 CGATCCTCGACTTACGCATTCTACCTCTCCAATTAGCTGAGCGCCTGCACACTCATTTCGTGGGT
453 CGATCCTCGGCTTGCGCATTCTACCTCTCC-ATTGGCTGAGCGCCTGCACACTCGTTTCGTGGGT
15795813 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
517 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
15795878 GACCGAACCGAGGGTTACGGCAGCAAGACCAGTAGTAGGATCTACAGTACG-A-AGTGGGGATCA
582 GACCGAACCAAGGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAGCACGCAGAG-GGGGACCA
* ** * * **
15795941 AGCCGCTCGTCGGCTTGCACATTCTACCTCTCCGA-CTGGCTGAGCACCCGCACGCTCATTTTGT
646 AGCCGATCCCCGACTTACACATTCTACCTCTCCGATC-GGCTGAGCACCCGCACGCTCATTTCAT
* * * *
15796005 GGGTTGGCTTAGGCTGACGGAGTTCATTCCATGTCTAAGTCCCAACCTGACTGAGGGTTGTGGTA
710 GGGTTGGCTTAGGCTGACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTCTGGCA
* * *
15796070 GTAGGACTGACAACGGGATCGGCAACACACAGAAGGGGACCGGGCTGATCCTCGGCTTGCACATT
775 GTACGACCGACAACGGGATCGACAACACACAGAAGGGGACCGGGCTGATCCTCGGCTTGCACATT
* * * *
15796135 ATGCCTCTCTGGCTGGCCTCTCTGATCGGCTGAGCGCCT
840 ATGCCTCTCTGACCGGCCTCTCCGATCGACTGAGCGCCT
* * * *
15796174 GCACGCTCGTTTTGTGGGATGACTTAGGCA-TACGAAGTTCATCCCCAGTCTACGCATACAGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGG-ATTACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
* * *
15796238 TCATTCCCAATCTAAGATCGAACAGGACCGAGGGTTGCGGTAGCTGGATCGACAGCATGAGGGGG
65 TCATTCCCAATCTAAGATCGAAC-GGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGA-GGGG
* * * ** *
15796303 GACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCACCCGCATACCCATT
128 GACCAGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTT
* * *
15796368 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAG-CCTCAGTCAGACTGAGGGTTG
193 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT-AGTCGGACCGAGGGTTG
* *
15796432 TGGCAGCGGGACCGATAGCACACAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTC
257 TGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTC
* * * * * *
15796497 T-TCGGTCGGCTCAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCC
322 TCT-GGCCGACTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCC
* * * * * * * *
15796561 CAGACTAAGATCAAATTGGACCGAGGGTTGTGGCAACAGGATCGACAGCATGTAGAGGGGAGCTG
386 CAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGG
* * * * * * * * * *
15796626 GCCGATCCTTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGTACGCTGGTTTCATCG
451 GTCGATCCTCGGCTTGCGCATTCTACCTCTCC-ATTGGCTGAGCGCCTGCACACTCGTTTCGTGG
* * * *
15796691 GTTGGCTTAGGCATATGGAGTTTATTCCATGTCTAAGCATACGGAGCTCATTCCCAGTCTAAGAT
515 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
15796756 TTTTAGCCAC
Statistics
Matches: 1237, Mismatches: 206, Indels: 40
0.83 0.14 0.03
Matches are distributed among these distances:
879 12 0.01
880 679 0.55
881 437 0.35
882 107 0.09
883 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (878 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGATTACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
CATTCCCAATCTAAGATCGAACGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGAGGGGGAC
CAGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGC
AGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTG
GCCGACTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTC
TAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGA
TCCTCGGCTTGCGCATTCTACCTCTCCATTGGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
GAACCAAGGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCAAGCCG
ATCCCCGACTTACACATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTG
GCTTAGGCTGACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTCTGGCAGTACGA
CCGACAACGGGATCGACAACACACAGAAGGGGACCGGGCTGATCCTCGGCTTGCACATTATGCCT
CTCTGACCGGCCTCTCCGATCGACTGAGCGCCT
Found at i:15796238 original size:26 final size:26
Alignment explanation
Indices: 15796201--15796251 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15796191 GATGACTTAG
*
15796201 GCATACGAAGTTCATCCCCAGTCTAC
1 GCATACGAAGTTCATCCCCAATCTAC
*
15796227 GCATAC-AGAGTTCATTCCCAATCTA
1 GCATACGA-AGTTCATCCCCAATCTA
15796252 AGATCGAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAC
Found at i:15796680 original size:158 final size:156
Alignment explanation
Indices: 15796234--15796718 Score: 467
Period size: 159 Copynumber: 3.1 Consensus size: 156
15796224 TACGCATACA
* * * *
15796234 GAGTTCATTCCCA-ATCTAAGATCGAACAGGACCGAGGGTTGCGGTAGCTGGATCGACAGCATGA
1 GAGTTCATTCCCAGA-CTAAGATC-AATAGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGA
* * * * *
15796298 GGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCACCCGCATAC
64 GAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG--TAC
* *
15796363 -C-CATTTCGTGGGTTGGCTTAGGCATAGG
127 GCTCGTTTCGTGGGTTGGCTTAGGCATATG
* * * * * * * * *
15796391 GAGTTCATT-CCATGTCAAAGCCTCAGTCA-GACTGAGGGTTGTGGCAGCGGGACCGATAGCACA
1 GAGTTCATTCCCA-GACTAAG-ATCAAT-AGGACCGAGGGTTGTGGCAGCAGGATCGACAGCA-T
* * * * * * * *
15796454 CAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGGA
62 GAGA-GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTA
* *
15796519 CGCTCGTTTCGTGGGTTGACTTATGCATATG
126 CGCTCGTTTCGTGGGTTGGCTTAGGCATATG
* *
15796550 GAGTTCATTCCCAGACTAAGATCAAATTGGACCGAGGGTTGTGGCAACAGGATCGACAGCATGTA
1 GAGTTCATTCCCAGACTAAGATC-AATAGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATG-A
* * ** *
15796615 GAGGGGAGCTGGCCGATCCTTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGTACGC
64 GAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGC
* * *
15796680 TGGTTTCATCGGTTGGCTTAGGCATATG
129 TCGTTTCGTGGGTTGGCTTAGGCATATG
*
15796708 GAGTTTATTCC
1 GAGTTCATTCC
15796719 ATGTCTAAGC
Statistics
Matches: 259, Mismatches: 57, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 42 0.16
158 94 0.36
159 117 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GAGTTCATTCCCAGACTAAGATCAATAGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGAGA
GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTC
GTTTCGTGGGTTGGCTTAGGCATATG
Found at i:15798137 original size:26 final size:26
Alignment explanation
Indices: 15798108--15798160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15798098 GTTGGCTTGG
15798108 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
15798134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15798160 G
1 G
15798161 ATCTGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15798368 original size:25 final size:26
Alignment explanation
Indices: 15798317--15798368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15798307 GTTGACTTAG
15798317 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15798343 GCATACGGAGTTTATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15798368 G
1 G
15798369 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15798822 original size:158 final size:155
Alignment explanation
Indices: 15798343--15798843 Score: 475
Period size: 158 Copynumber: 3.2 Consensus size: 155
15798333 CCCAGTCTAA
* * * * *
15798343 GCATACGGAGTTTATTCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCAAGATCGACAG
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGAC-CGACCGAGGGTTACGGCAG-AGGATCGACAG
* * * * * * * * ** *
15798408 CACGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCTTTTTGCCTCTCCGACTGGCTGAGCACCT
64 CATGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCTGGCTAAGTGCCC
15798473 GCACGC-CTGTTTCATGGGTTGGCTTAG
129 GCACGCTC-GTTTCATGGGTTGGCTTAG
* ** ** ** * *
15798500 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTCGACCGAGGGTTGTGGCAGCGGGTCTGACA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGACCGAGGGTTACGGCAGAGGATC-GACA
** * * * *
15798565 GCATGCAGAGGGGGACCATGTTGATCGCTGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGC
63 GCATGCAG-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCTGGCTAAGTGC
* * * **
15798630 CCGAACGCTCGTTTCGTTGGTTAACTTAG
127 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
15798659 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACC-GACCGAGGGTTACGGCAG-AGGATCGACA
* * * *
15798724 GCATGCAGGGGGGATCGGGTCGGTCCCTGGCTTGTGCATTCTGCCTCTTCGG-TCGGCTAAGTGC
63 GCATGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCT-GGCTAAGTGC
*
15798788 CCGCACGCTCATTTCATGGGTTGGCTTAG
127 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
15798817 GCATACAGAATTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
15798844 CGTATGGAGT
Statistics
Matches: 272, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 24 0.09
158 124 0.46
159 116 0.43
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGACCGAGGGTTACGGCAGAGGATCGACAGCA
TGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCTGGCTAAGTGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15799063 original size:26 final size:26
Alignment explanation
Indices: 15799027--15799078 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15799017 GTTGACTTAG
15799027 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15799053 GCATAGGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15799079 CATCGAATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15799343 original size:712 final size:709
Alignment explanation
Indices: 15798097--15799397 Score: 1698
Period size: 712 Copynumber: 1.8 Consensus size: 709
15798087 TCATTTCGGA
* * *
15798097 GGTTGGCTTGGGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACAGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
15798162 TCTGATCGGACCAAGGATTACGATCGCAGGACCAGCACCAGGACCGATAGCACATAGGAGGGACC
66 TCAGACCAGACCAAGCATTACGATCACAGGACCAGCACCAGGACCGATAGCACATAGGAGGGACC
* * * * ** **
15798227 GGGTCGATCCCCGGCTTGCACATTCTGCCTCACCGGTTGGCCTCTCCGACCGGTTGAACATCCGC
131 GGGCCAATCCCCAGCTTACACATTCTGCCTCACCGACTGGCCTCTCCGACCGACTGAACATCCGC
* * *
15798292 GCGATCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTTA
196 ACGATCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* *
15798357 TTCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAGGAGGGAC
261 TTCCAGTCTAACATCGAACTGGACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAGGAGGGAC
* * * * * * * * *
15798422 CGGGTCGATCCCCGGCTTGCGCTTTTTGCCTCTCCGACTGGCTGAGCACCTGCACGCCTGTTTCA
326 CGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCCGAGCACCCGCACGCCCGTTTCA
* **
15798487 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTCGACCGAGGGTTGTGGC
391 TGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAACTCGACCGAGGGTTGTGGC
* * * * *
15798552 AGCGGGTCTGACAGCATGCAGAGGGGGACCATGTTGATCGCTGGCTTGCGCATTATGCCTCTCCG
456 AGCGGGACCGACAGCATGCAGAGGGGGACCAGGTTGATCCCCGGCTTGCGCATTATGCCTCTCCG
* *** * *
15798617 GCTGGCTCAGTGCCCGA-ACGCTCGTTTCGTTGGTTAACTTAGGCATACGGAGTTCATTCCCA-G
521 ACCAACTCAGTGCCC-ACACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATT-CCATG
15798680 TCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCATGCAGGGGGGATCGGGTC
584 TCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCATGCAGGGGGGATCGGGTC
15798745 GGTCCCTGGCTTGTGCATTCTGCCTCTTCGGTCGGCTAAGTGCCCGCACGCTCATTTCATG
649 GGTCCCTGGCTTGTGCATTCTGCCTCTTCGGTCGGCTAAGTGCCCGCACGCTCATTTCATG
* * * * * *
15798806 GGTTGGCTTAGGCATACAGAATTTATTCCATGTCTAAGCGTATGGAGTTCATTCCTATTCTATGA
1 GGTTGGCTTAGGCATACAGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
15798871 TCAGACCAGACCGAGCATTAC-AGCTACAGGACCAGCAGCAGGATCGGTAGCACATAAGGGGGGA
66 TCAGACCAGACCAAGCATTACGATC-ACAGGACCAGCACCAGGACCGATAGCACAT-AGGAGGGA
* * * * * * *
15798935 CTGGGCCAATCCTCAGCTTACGCATTCTGCCTCACCGACTGGCCTCTCTGATCGACTGAGC-GCT
129 CCGGGCCAATCCCCAGCTTACACATTCTGCCTCACCGACTGGCCTCTCCGACCGACTGAACATC-
* * *
15798999 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAGGGAGT
193 CGCACGATCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * *
15799064 TCATTCCCGGTCTAACATCGAA-TCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGG-
258 TCATT-CCAGTCTAACATCGAACT-GGACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAGGA
* * * *
15799127 GGTGACCGAGCCGATGCCTGGCTTACGCATTCTGCCTTTTCGACCGGCCGAGTGC-CCCGCACGC
321 GG-GACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCCGA--GCACCCGCACGC
** *
15799191 CCGTTTTGTGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGG
383 CCGTTTCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAACTCGACCGAGG
* *
15799256 GTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTG
448 GTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACCAGGTTGATCCCCGGCTTGCGCATTATG
* * * **
15799321 CCTCTCTGACCAACTGAGTGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
513 CCTCTCCGACCAACTCAGTGCCCACACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCAT
15799386 TCCATGTCTAAG
578 TCCATGTCTAAG
15799398 CATACAGAGT
Statistics
Matches: 497, Mismatches: 85, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
708 2 0.00
709 99 0.20
710 121 0.24
711 89 0.18
712 184 0.37
713 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (709 bp):
GGTTGGCTTAGGCATACAGAATTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCAGACCAAGCATTACGATCACAGGACCAGCACCAGGACCGATAGCACATAGGAGGGACC
GGGCCAATCCCCAGCTTACACATTCTGCCTCACCGACTGGCCTCTCCGACCGACTGAACATCCGC
ACGATCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCAGTCTAACATCGAACTGGACCAAGGGTTACGGCAGCAAGATCGACAGCACGCAGGAGGGAC
CGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCCGAGCACCCGCACGCCCGTTTCA
TGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAACTCGACCGAGGGTTGTGGC
AGCGGGACCGACAGCATGCAGAGGGGGACCAGGTTGATCCCCGGCTTGCGCATTATGCCTCTCCG
ACCAACTCAGTGCCCACACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCATGTC
TAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCATGCAGGGGGGATCGGGTCGG
TCCCTGGCTTGTGCATTCTGCCTCTTCGGTCGGCTAAGTGCCCGCACGCTCATTTCATG
Found at i:15799349 original size:159 final size:159
Alignment explanation
Indices: 15799088--15799398 Score: 383
Period size: 159 Copynumber: 2.0 Consensus size: 159
15799078 ACATCGAATC
* * * * *
15799088 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGTGACCGAGCCGATGCCTGGCTTAC
1 GGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTAC
* ** * ** *
15799153 GCATTCTGCCTTTTCGACCGGCCGAGTGCCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCACAG
66 GCATTCTGCCTTCTCGACCAACCGAGTGCCCCACACGCCCGTTTCATGGGTTGGCTTAGGCACAC
15799218 GGAGTTCATTCCATGTCTAAGCCCCAACT
131 GGAGTTCATTCCATGTCTAAGCCCCAACT
* * * * ** *
15799247 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACCGGGTTGATCCCCGGCTTG
1 GGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTA
* ** *
15799312 CGCATTCTGCC-TCTCTGACCAACTGAGTG-CCCACACGCTTGTTTCATGGGTTGGCTTAGGCAT
65 CGCATTCTGCCTTCTC-GACCAACCGAGTGCCCCACACGCCCGTTTCATGGGTTGGCTTAGGCAC
15799375 ACGGAGTTCATTCCATGTCTAAGC
129 ACGGAGTTCATTCCATGTCTAAGC
15799399 ATACAGAGTT
Statistics
Matches: 127, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
159 87 0.69
160 40 0.31
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (159 bp):
GGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTAC
GCATTCTGCCTTCTCGACCAACCGAGTGCCCCACACGCCCGTTTCATGGGTTGGCTTAGGCACAC
GGAGTTCATTCCATGTCTAAGCCCCAACT
Found at i:15800627 original size:26 final size:26
Alignment explanation
Indices: 15800598--15800676 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15800588 CCGGTCCGAT
*
15800598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
15800624 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
15800650 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
15800676 C
1 C
15800677 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:15801678 original size:159 final size:159
Alignment explanation
Indices: 15801377--15801679 Score: 357
Period size: 159 Copynumber: 1.9 Consensus size: 159
15801367 TCCGTATGCT
* *
15801377 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAGCTA
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAGCTA
* * *
15801442 GCCGAAGAGACAGAATATGCAAGCGTGGGATCAGTCCGATCCTCCTCTGCATGCTGTCGGTCCCA
66 GCCGAAGAGACAGAATACGCAAGCGTAGGATCAGTCCGATCCTCCTCTGCATGCTGTCGATCCCA
15801507 CTGCCACAACCCTCCGTCTGACTGAGGCC
131 CTGCCACAACCCTCCGTCTGACTGAGGCC
* * *
15801536 TAGACATGGAATGAACTCCCTATGCCTAAGCTAACTCACAAAAC-AGGTGTGGCGGGCAG-TCAG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGA-GTGT-GCAGGC-GCTCAG
* * * * * *
15801599 -TCGGCCGAAGAGGCAGAATGCGCAAGCCG-AGGATC-GGCTCGATCC-CCTCTGCGTGCTGTTG
63 CT-AGCCGAAGAGACAGAATACGCAAG-CGTAGGATCAGTC-CGATCCTCCTCTGCATGCTGTCG
** *
15801660 ATCCTGCTGCCGCAACCCTC
125 ATCCCACTGCCACAACCCTC
15801680 GGTCCGATCC
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
158 1 0.01
159 77 0.64
160 40 0.33
161 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAGCTA
GCCGAAGAGACAGAATACGCAAGCGTAGGATCAGTCCGATCCTCCTCTGCATGCTGTCGATCCCA
CTGCCACAACCCTCCGTCTGACTGAGGCC
Found at i:15801699 original size:159 final size:159
Alignment explanation
Indices: 15801374--15801711 Score: 350
Period size: 159 Copynumber: 2.1 Consensus size: 159
15801364 AACTCCGTAT
* *
15801374 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAG
* * *
15801439 CTAGCCGAAGAGACAGAATATGCAAGCGTGGGATCAGTCCGATCCTCCTCTGCATGCTGTCGGTC
66 CTAGCCGAAGAGACAGAATACGCAAGCGTAGGATCAGTCCGATCCTCCTCTGCATGCTGTCGATC
* *
15801504 CCACTGCCACAACCCTCCGTCTGACTGAG
131 CCACTGCCACAACCCTCCGTCCGACCGAG
* * * *
15801533 GCCTAGACATGGAATGAACTCCCTATGCCTAAGCTAACTCACAAAAC-AGGTGTGGCGGGCAG-T
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGA-GTGT-GCAGGC-GCT
* * * * *
15801596 CAG-TCGGCCGAAGAGGCAGAATGCGCAAGCCG-AGGATC-GGCTCGATCC-CCTCTGCGTGCTG
63 CAGCT-AGCCGAAGAGACAGAATACGCAAG-CGTAGGATCAGTC-CGATCCTCCTCTGCATGCTG
* ** * *
15801657 TTGATCCTGCTGCCGCAACCCTCGGTCCGATCCGA-
125 TCGATCCCACTGCCACAACCCTCCGTCCGA-CCGAG
*
15801692 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
15801712 ATGTATGCTT
Statistics
Matches: 148, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
158 2 0.01
159 100 0.68
160 43 0.29
161 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTCAG
CTAGCCGAAGAGACAGAATACGCAAGCGTAGGATCAGTCCGATCCTCCTCTGCATGCTGTCGATC
CCACTGCCACAACCCTCCGTCCGACCGAG
Found at i:15801940 original size:26 final size:26
Alignment explanation
Indices: 15801902--15801953 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15801892 CTGATCTGGT
15801902 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15801928 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15801954 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15802183 original size:158 final size:158
Alignment explanation
Indices: 15801928--15802263 Score: 417
Period size: 158 Copynumber: 2.1 Consensus size: 158
15801918 ACTCCATATG
* * * *
15801928 CTTAGACAT-GGAATGAACTTCATATGTCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATACGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAA
* * *
15801992 CCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCCTT-TATGCTAATGATC
65 CAAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCATGGT-CCCCCTTGCATGCTAATGATC
*
15802056 TTGCTACCACAACCCTTGGTCCAGTCT-GAT
129 CTGCTACCACAACCCTTGGTCCAGT-TAGAT
* * *
15802086 CTTAGACTGGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCTCTCAAC
1 CTTAGACTGGGAATGAACTCCATACGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAAC
* * * * * * **
15802151 AAGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCATGGTCCCCGTTGCGTGCTGCTGATCCT
66 AAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCATGGTCCCCCTTGCATGCTAATGATCCT
* ***
15802216 GCTGCTGTAACCCTTGGTCCAGTTAGAT
131 GCTACCACAACCCTTGGTCCAGTTAGAT
15802244 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
15802264 TGTATGCTTA
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 8 0.05
158 144 0.95
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATACGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAAC
AAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCATGGTCCCCCTTGCATGCTAATGATCCT
GCTACCACAACCCTTGGTCCAGTTAGAT
Found at i:15802280 original size:26 final size:26
Alignment explanation
Indices: 15802244--15802296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15802234 CCAGTTAGAT
*
15802244 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15802270 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15802296 C
1 C
15802297 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15803458 original size:26 final size:26
Alignment explanation
Indices: 15803429--15803478 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15803419 TGATCCGATT
*
15803429 TTAGACT-GGGAATGAACTCTGTATGC
1 TTAGACTAGGG-ATGAACTCCGTATGC
*
15803455 TTAGACTATGGATGAACTCCGTAT
1 TTAGACTAGGGATGAACTCCGTAT
15803479 CCCTAAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCCGTATGC
Found at i:15803833 original size:26 final size:26
Alignment explanation
Indices: 15803795--15803847 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15803785 CCAGTCTGAT
15803795 CTTAGAATGGGAATGAACT-TCGTATG
1 CTTAGAATGGGAATGAACTCT-GTATG
15803821 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGA-ATGGGAATGAACTCTGTATG
15803847 C
1 C
15803848 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:15804319 original size:26 final size:26
Alignment explanation
Indices: 15804290--15804342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15804280 CTGGTCCGAT
15804290 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15804316 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15804342 C
1 C
15804343 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15805524 original size:26 final size:26
Alignment explanation
Indices: 15805488--15805540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15805478 TTGGTCTGAT
*
15805488 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15805514 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15805540 C
1 C
15805541 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15805742 original size:197 final size:195
Alignment explanation
Indices: 15805407--15805947 Score: 577
Period size: 197 Copynumber: 2.7 Consensus size: 195
15805397 GCAGGAGATG
* * * * **
15805407 CAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTACATGCTGTCAATCCCACTACTGCAACC
1 CAGAATGCGCAAG-CAGGGATCGACCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTACTGCAACC
* * *
15805472 CT-AGGTTTG-GTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
64 CTCA-GTTCGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
** * *
15805535 GTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCACTCAGCTGGCC-GAAGAGGCCGATCGG
127 GTATGCCTAAGTCAACCCACAAAACGAGCATGCAGGCACTCAGCCGGCCAG-AGAGGCCGATCGG
15805599 AGAGA
191 AGAGA
* * *
15805604 CAGAATGCGCAAGTCAGGGATCGGCCTGGTCCCTCCTGCGTGCTGTCGATCCTGCTATTGCAACC
1 CAGAATGCGCAAG-CAGGGATCGACCCGGTCCC-CCTGCGTGCTGTCGATCCTGCTACTGCAACC
* * * * *
15805669 CTCTGTTCGATTCGATCTTAGACCGGGAATGAACTCTGCATGCTTAAACTGGGGATGAACTCCGT
64 CTCAGTTCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
** * * ** *
15805734 ATGCCTAAGTCAACCCATGAAACGAGCATGCAGGCGCTTAGCCGGCCAGAGAGGTTGGTCGGAGA
129 ATGCCTAAGTCAACCCACAAAACGAGCATGCAGGCACTCAGCCGGCCAGAGAGGCCGATCGGAGA
*
15805799 GG
194 GA
* * * * ** * * *
15805801 CAAAATGCGCACGCTGGGGATCGACCCGATCCCCCTTGCGTGCTACCGATCCTGCTGCCGTAACC
1 CAGAATGCGCAAGC-AGGGATCGACCCGGTCCCCC-TGCGTGCTGTCGATCCTGCTACTGCAACC
* * * *
15805866 CTCAG-TCTGATCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTAGGGATGAACTTCG
64 CTCAGTTC-GATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
*
15805930 TATGCCTACGTCAACCCA
128 TATGCCTAAGTCAACCCA
15805948 TGAAACGACC
Statistics
Matches: 285, Mismatches: 52, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
196 8 0.03
197 274 0.96
198 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (195 bp):
CAGAATGCGCAAGCAGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCT
CAGTTCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAT
GCCTAAGTCAACCCACAAAACGAGCATGCAGGCACTCAGCCGGCCAGAGAGGCCGATCGGAGAGA
Found at i:15805911 original size:26 final size:26
Alignment explanation
Indices: 15805882--15805934 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15805872 CTGATCCGAT
15805882 CTTAGACT-GGGAATAAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
* *
15805908 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
15805934 C
1 C
15805935 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:15807039 original size:158 final size:157
Alignment explanation
Indices: 15806632--15807058 Score: 362
Period size: 158 Copynumber: 2.7 Consensus size: 157
15806622 AACTTCATAT
* * *
15806632 GCTTAGAA-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
1 GCTTA-AACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
15806696 ACCGACTAGAGAGGCAAAATGTGCAAGCCAGGGATCAGCTCGGTCCCCCCTAGGTGCTATCAATC
65 GCCGACTAGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCCACCTAGGTGCTACCAATC
* * * *
15806761 TTGATGCCGCAACCCTCGGTCTGATCCGA
130 -TCATGCCACAACCCTCGATCTGATCAGA
* * * ** * * * * *
15806790 TCCTAGAC-TGGGAATGAACTCCGTATGTATAAGTCAACCCACAAAATGAGAGTGCGGGCGCTGA
1 GCTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * *
15806854 GCC-AATCGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCTCATCT-GAGTGCTGCCA
65 GCCGACTAG-AGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCC-CACCTAG-GTGCTACCA
* * * *
15806917 GTC-CACTGCCATAACCCTCGATCTG-GCTAGG
127 ATCTCA-TGCCACAACCCTCGATCTGATC-AGA
* * *
15806948 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAG
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
15807013 CCGACTAGAGAGGCAGAATGTGCAAGCTGAGGATCGACCCGATCCC
66 CCGACTAGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCC
15807059 CCCTGCATGC
Statistics
Matches: 204, Mismatches: 56, Indels: 19
0.73 0.20 0.07
Matches are distributed among these distances:
157 8 0.04
158 180 0.88
159 16 0.08
ACGTcount: A:0.27, C:0.28, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACTAGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCCACCTAGGTGCTACCAATCT
CATGCCACAACCCTCGATCTGATCAGA
Found at i:15807157 original size:26 final size:26
Alignment explanation
Indices: 15807119--15807171 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15807109 CTGATCCGAT
15807119 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15807145 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15807171 C
1 C
15807172 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15808707 original size:26 final size:26
Alignment explanation
Indices: 15808678--15808728 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15808668 CCGGTTCGAT
**
15808678 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACAAGGAATGAACTCCGTATA
15808704 CTTAGACAAGGAATGAACTCCGTAT
1 CTTAGACAAGGAATGAACTCCGTAT
15808729 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATA
Found at i:15809219 original size:26 final size:26
Alignment explanation
Indices: 15809179--15809231 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15809169 CCGGTCCGAT
* *
15809179 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTACGTATG
*
15809205 CTTAGACTGGAAATGAGCTACGTATG
1 CTTAGACTGGAAATGAACTACGTATG
15809231 C
1 C
15809232 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTACGTATG
Found at i:15811293 original size:26 final size:26
Alignment explanation
Indices: 15811242--15811294 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15811232 CCGATCCGAT
*
15811242 CTTCGACTGGGAATGAACTCCGTATG
1 CTTCGACTGGGAATGAACTCCATATG
*
15811268 CTTCGACAT-GGAATGAACTTCATATG
1 CTTCGAC-TGGGAATGAACTCCATATG
15811294 C
1 C
15811295 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTCGACTGGGAATGAACTCCATATG
Found at i:15811561 original size:26 final size:26
Alignment explanation
Indices: 15811532--15811584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15811522 CCGATTCGAT
* *
15811532 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15811558 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15811584 C
1 C
15811585 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15812262 original size:26 final size:26
Alignment explanation
Indices: 15812226--15812278 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15812216 CTGGTTCGAT
15812226 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15812252 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15812278 C
1 C
15812279 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15812451 original size:26 final size:26
Alignment explanation
Indices: 15812422--15812474 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15812412 CTGGTCCGAT
15812422 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACATGGG-ATGAACTCCGTATG
15812448 CTTAGACATGGGATGAACTCCGTATG
1 CTTAGACATGGGATGAACTCCGTATG
15812474 C
1 C
15812475 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGGATGAACTCCGTATG
Found at i:15812516 original size:196 final size:197
Alignment explanation
Indices: 15812161--15812518 Score: 483
Period size: 196 Copynumber: 1.8 Consensus size: 197
15812151 GCATAAGTCA
* * ** * * *
15812161 GGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCCTAGTGTCGTAACCCTTGATCTGGTTCGAT
1 GGGATCAACCCGATCCCCCCTACGTGCTACCGATCCTAGTGTCGCAACCCTCGATCTGGTCCGAT
* *
15812226 CTTAGACTAGGGATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
66 CTTAGACTAGGGATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCA
* * * * *
15812291 TCGAAATGAGCGTATGGGTGCTTAGTCGGTCGGGGAGACCGGTCGGAGAGGCAGAATGTGCAAGC
131 TCGAAACGAACGTACGGGCGCTCAGTCGGTCGGGGAGACCGGTCGGAGAGGCAGAATGTGCAAGC
15812356 TG
196 TG
* * *
15812358 GGGATCAGCCCGAT-CCCCCTACGTGCTACCGATCCT-GCTGTGGCAACCCTCGGTCTGGTCCGA
1 GGGATCAACCCGATCCCCCCTACGTGCTACCGATCCTAG-TGTCGCAACCCTCGATCTGGTCCGA
15812421 TCTTAGACT-GGGAATGAACTCCGTATGCTTAGAC-ATGGGATGAACTCCGTATGCCTAAGCCAA
65 TCTTAGACTAGGG-ATGAACTCCGTATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGCCAA
*
15812484 CGCAT-GAAACGAACGTGCGGGCGCTCAGTCGGTCG
128 C-CATCGAAACGAACGTACGGGCGCTCAGTCGGTCG
15812519 AAGAGGCATA
Statistics
Matches: 139, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
195 5 0.04
196 120 0.86
197 14 0.10
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (197 bp):
GGGATCAACCCGATCCCCCCTACGTGCTACCGATCCTAGTGTCGCAACCCTCGATCTGGTCCGAT
CTTAGACTAGGGATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCA
TCGAAACGAACGTACGGGCGCTCAGTCGGTCGGGGAGACCGGTCGGAGAGGCAGAATGTGCAAGC
TG
Found at i:15812768 original size:694 final size:691
Alignment explanation
Indices: 15811332--15812788 Score: 1648
Period size: 694 Copynumber: 2.1 Consensus size: 691
15811322 GGGCACTCAG
* * * * *
15811332 CGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATAGAATGAACTCCC
1 CGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCC
* * * *
15811397 TATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTTAGCCGATCGGAGAGCCAGAATGCGC
66 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGCCAGAATGCAC
* ** * * *
15811462 AAGCCGAGGATCGGCCGATCCCTCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGAT
131 AAGCAGAGGATCACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGAT
* *
15811527 TCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTC
196 TCGATCTTAGATAGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTC
* * * * *
15811592 AATCCACAAAACGAGTGTGCGGGTGCTCAGTTGGCCGGAGAGGCCGGTCAGAGAGGCAGAATGCG
261 AACCCACAAAACGAGCGTACGGGTGCTCAGTCGGCCGGAGAGACCGGTCAGAGAGGCAGAATGCG
* * ** *
15811657 CAAGCGGGCATCGACCTGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCTCAACCCTCGGTCCGG
326 CAAGCGGGCATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGG
* * *
15811722 TCCGATCTTAGACTAGGAATGCACTTCGTATGCTTAGACATGGAATGAACTCTGAATGCTAAGCC
391 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGAATGCTAAGCC
* * * *
15811787 ACCCATGAAACAAGCATGCAGGCGCTCAGCCGTTCGGAGAGGTAGAACGCGTAAGCCAGGGACCG
456 ACCCATGAAACAAGCATGCAGGCGCTCAGCCGGTCGAAGAGGCAGAACGCGCAAGCCAGGGACCG
* * * * *
15811852 ACTCGATCCCCATGCGTGCTGTCGATCCTGCTGCTGTAACCCTTGGTTCAGTCTGATCTTAGACT
521 ACCCGATCCCCATGCGTGCTGTCGATCCTGCTGCTGCAACCCTTCGATCAGGCTGATCTTAGACT
* * ** * * * * *
15811917 GGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGTTGAGCCGACTGGA
586 GGGAATAAACTCCCTATG-C-AAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
* *
15811982 GAGGCATAATACGCAAGCCGGGGATCGGCTCGATCCCCCTCTA
649 GAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCTA
* * * * * *
15812025 CGTGCTGTCGATCTTGCTGCCACACCCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCC
1 CGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCC
* * ** * *
15812090 TATGCCTAAGCCGAA-CCACGAAATGAGTGTGTGGGTGCTCAACCGATCGGAGAGGCAGAATGCA
66 TATGCCTAAGCC-AACCCACGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGCCAGAATGCA
* * * * * *
15812154 TAAGTCAG-GGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCCTAG-TGTCGTAACCCTTGATC
130 CAAG-CAGAGGATC-ACCCGATCCCCCCTACGTGCTGTCGATCCT-GCTGCCGCAACCCTCGATC
* * *
15812217 TGGTTCGATCTTAGACTAGGG-ATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCT
192 CGATTCGATCTTAGA-TAGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCT
* * * * * * * *
15812281 AAGTCAACCCTCGAAATGAGCGTATGGGTGCTTAGTCGGTCGGGGAGACCGGTCGGAGAGGCAGA
256 AAGTCAACCCACAAAACGAGCGTACGGGTGCTCAGTCGGCCGGAGAGACCGGTCAGAGAGGCAGA
* * **
15812346 ATGTGCAAGCTGGGGATC-AGCCCGAT-CCCCCTACGTGCTACCGATCCTGCTGTGGCAACCCTC
321 ATGCGCAAGC-GGGCATCGA-CCCGATCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTC
* * * *
15812409 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATG
384 GGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGAATG
* * * * * *
15812474 CCTAAGCCAACGCATGAAACGAA-CGTGCGGGCGCTCAGTCGGTCGAAGAGGCATAATGCGCAAG
449 -CTAAGCC-ACCCATGAAAC-AAGCATGCAGGCGCTCAGCCGGTCGAAGAGGCAGAACGCGCAAG
* * * * *
15812538 CCGGGGACCGGCCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGC-GACAACCC-TCGATCTGG
511 CCAGGGACCGACCCGAT--CCCCATGCGTGCTGTCGATCCTGCTGCTG-CAACCCTTCGATCAGG
* * *
15812601 CTGGTGCTTAGACAT-GGAATGAACTCCCTATG-AAGCCAACCCACAAAACGGGCGTGCGGGCGC
573 CTGAT-CTTAGAC-TGGGAATAAACTCCCTATGCAAGCCAACCCACAAAACGAGCGTGCGGGCGC
* * * *
15812664 TCAGCTGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCC-CTG
636 TCAGCCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCTA
* * *
15812719 GGTGCTATCGATCCTGCTACCGCAACCCTC-GATCCGGTCT-GATCTTAGAC-TGGGAATGAACT
1 CGTGCTATCGATCCTGCTACCACAACCCTCAG-TCCGG-CTGGAGCTTAGACAT-GGAATGAACT
*
15812781 CCGTATGC
63 CCCTATGC
15812789 TTAGACTGGG
Statistics
Matches: 635, Mismatches: 111, Indels: 35
0.81 0.14 0.04
Matches are distributed among these distances:
693 119 0.19
694 302 0.48
695 93 0.15
696 55 0.09
697 12 0.02
698 53 0.08
699 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (691 bp):
CGTGCTATCGATCCTGCTACCACAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCC
TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGATCGGAGAGCCAGAATGCAC
AAGCAGAGGATCACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGAT
TCGATCTTAGATAGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTC
AACCCACAAAACGAGCGTACGGGTGCTCAGTCGGCCGGAGAGACCGGTCAGAGAGGCAGAATGCG
CAAGCGGGCATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGG
TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGAATGCTAAGCC
ACCCATGAAACAAGCATGCAGGCGCTCAGCCGGTCGAAGAGGCAGAACGCGCAAGCCAGGGACCG
ACCCGATCCCCATGCGTGCTGTCGATCCTGCTGCTGCAACCCTTCGATCAGGCTGATCTTAGACT
GGGAATAAACTCCCTATGCAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
GGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCTA
Found at i:15812791 original size:26 final size:26
Alignment explanation
Indices: 15812762--15812814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15812752 CCGGTCTGAT
15812762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15812788 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15812814 C
1 C
15812815 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15812945 original size:536 final size:531
Alignment explanation
Indices: 15811909--15812923 Score: 1218
Period size: 536 Copynumber: 1.9 Consensus size: 531
15811899 TCAGTCTGAT
* * * * * *
15811909 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCGTTGAGC
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAGC
* * * * *
15811974 CGACTGGAGAGGCATAATACGCAAGCCGGGGATCGGCTCGATCCCCCTCTACGTGCTGTCGATCT
66 CGACTGAAGAGGCATAATACGCAAGCCGGGGACCGGCCCGATCCCCCCCTACGTGCTGTCGATCC
*
15812039 TGCTGCCACACCCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGA
131 TGCTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATG-C-AAGCCGA
* * * * * * *
15812104 ACCACGAAATGAGTGTGTGGGTGCTCAACCGATCGGAGAGGCAGAATGCATAAGTCAGGGATCAA
194 ACCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCAA
* * ** * * *
15812169 CCCGGTCCCCCCTGCGTGCTGTCGATCCTAGTGTCGTAACCCTTGATCTGGTTCGATCTTAGACT
259 CCCGATCCCCCCTGCGTGCTATCGATCCTAGTACCGCAACCCTCGATCCGGTTCGATCTTAGACT
*
15812234 AGGGATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCTCGAAATG
324 AGGGATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCTCGAAACG
** * * * *
15812299 AGCGTATGGGTGCTTAGTCGGTCGGGGAGACCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATC
389 AGCGTATGGGTGC-T-GTC-GTC---GAGACCGACCGGAGAGGCACAATGAGCAAGCCGAGGATC
* *
15812364 AGCCCGATCCCCCTACGTGCTACCGATCCTGCTGTGGCAACCCTCGGTCTGGTCCGATCTTAGAC
448 AGCCCGATCCCCCTACGTGCTACCGATCCCGCTATGGCAACCCTCGGTCTGGTCCGATCTTAGAC
15812429 TGGGAATGAACTCCGTATG
513 TGGGAATGAACTCCGTATG
* *
15812448 CTTAGACATGGG-ATGAACTCCGTATGCCTAAGCCAACGCATGAAACGAACGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAG
* * * * *
15812512 TCG-GTCGAAGAGGCATAATGCGCAAGCCGGGGACCGGCCCGGTCCCCCCCTGCGTGCTGTCGAT
65 CCGACT-GAAGAGGCATAATACGCAAGCCGGGGACCGGCCCGATCCCCCCCTACGTGCTGTCGAT
* *
15812576 CCTGCTGCGACAACCCTC-GATCTGGCTGGTGCTTAGACATGGAATGAACTCCCTATG-AAGCC-
129 CCTGCTGCCACAACCCTCAG-TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCAAGCCG
* * * * *
15812638 AACCCACAAAACGGGCGTGCGGGCGCTCAGCTGACCGGAGAGGCAGAATGCGCAAG-CTGGGGAT
193 AA-CCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTC-AGGGAT
** *
15812702 CGGCCCGATCCCCCCTGGGTGCTATCGATCCT-GCTACCGCAACCCTCGATCCGG-TCTGATCTT
256 CAACCCGATCCCCCCTGCGTGCTATCGATCCTAG-TACCGCAACCCTCGATCCGGTTC-GATCTT
* *
15812765 AGACT-GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCCAT
319 AGACTAGGG-ATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC-T
* *
15812829 -GAAACGAGCGTGT-GG-GC-G-C-TC-AG-CCGACCGGAGAGGTACAATGAGCAAGCCGAGGAT
382 CGAAACGAGCGTATGGGTGCTGTCGTCGAGACCGACCGGAGAGGCACAATGAGCAAGCCGAGGAT
**
15812886 CAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTAT
447 CAGCCCGAT-CCCC-CTACGTGCTACCGATCCCGCTAT
15812924 CGGTCCTACA
Statistics
Matches: 407, Mismatches: 58, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
523 36 0.09
524 6 0.01
525 19 0.05
528 2 0.00
530 1 0.00
531 1 0.00
534 2 0.00
535 11 0.03
536 167 0.41
537 1 0.00
538 2 0.00
539 155 0.38
540 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (531 bp):
CTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAGC
CGACTGAAGAGGCATAATACGCAAGCCGGGGACCGGCCCGATCCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCAAGCCGAAC
CACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCAACC
CGATCCCCCCTGCGTGCTATCGATCCTAGTACCGCAACCCTCGATCCGGTTCGATCTTAGACTAG
GGATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAG
CGTATGGGTGCTGTCGTCGAGACCGACCGGAGAGGCACAATGAGCAAGCCGAGGATCAGCCCGAT
CCCCCTACGTGCTACCGATCCCGCTATGGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
AACTCCGTATG
Found at i:15813478 original size:26 final size:26
Alignment explanation
Indices: 15813442--15813494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15813432 TCGTTTCGAT
* *
15813442 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
15813468 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
15813494 C
1 C
15813495 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15814386 original size:158 final size:158
Alignment explanation
Indices: 15813835--15814408 Score: 487
Period size: 159 Copynumber: 3.6 Consensus size: 158
15813825 CTCCGTATGA
* ** * * *
15813835 TTAGACATGGAATGAACTCCGAATGCCTAAGCCAACCCACAAAACGAGCGCGCGGGA-GCTTAAC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGACGCTCAGC
* * * * * * * *
15813899 TGGCCAGAGAGACAGAATGCGCAAGCCAGGGA-CCGACCCGGTCCCCTCCAGCATGCTGTCGATC
65 CGGCCAAAGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCCGACCCC-CCTGCGTGCTGTCGATC
* * * *
15813963 CTGCTACCCCAACCCTCAGTCCGATCCGATC
128 CTGCTACCACAACCCTCAGTCTGGTCCAATC
* * * * *
15813994 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATC-AACGGGCGGGCGCTGAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CGAGCGTGCGGACGCTCAG
* * * * * ** * * *
15814057 CCGGCTAAAGAGGCATAATGCGCAAGCCGGGGAT-GGGCTTGATCCCCCTCTACGTGCTATCGGT
64 CCGGCCAAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCCGA-CCCCC-CTGCGTGCTGTCGAT
* * * **
15814121 CCCGCTACCACAACCCTCGGTCCT-G-CTAGGGC
127 CCTGCTACCACAACCCTCAGT-CTGGTCCA-ATC
* * * * * *
15814153 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGCCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCC
** * * * *
15814218 GGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCCGACCCCCCTGCGTCCTGCCGATCTTG
66 GGCCAAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCCGACCCCCCTGCGTGCTGTCGATCCTG
* * *
15814283 CTGCCGCAACCCTTAGTCTGGTCCAATC
131 CTACCACAACCCTCAGTCTGGTCCAATC
*
15814311 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCC
** * * *
15814376 AACTAAAGAGGCAGGATGCGCAAGCCGGGGATC
66 GGCCAAAGAGGCAGAATGCGCAAGCCAGGGATC
15814409 GAACGGGTGG
Statistics
Matches: 319, Mismatches: 83, Indels: 27
0.74 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 118 0.37
159 192 0.60
160 7 0.02
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGCC
GGCCAAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCCGACCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCAGTCTGGTCCAATC
Found at i:15815213 original size:26 final size:26
Alignment explanation
Indices: 15815177--15815229 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15815167 CCAATCTGAT
15815177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15815203 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15815229 C
1 C
15815230 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15815796 original size:159 final size:159
Alignment explanation
Indices: 15815334--15815839 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 159
15815324 TACCGATCCC
* * *
15815334 ACTGTCGGTCCTGCTGCCACAACCCTCGGTTTGA-TCGGGGCTTAGAAATGGAATGAACTTCGTA
1 ACTGTCGATCCTGCTGCCACAACCCTCGGTCTGACT-GGGGCTTAGACATGGAATGAACTTCGTA
* * *
15815398 TGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGTCAGAGAGGTAGAATGTGCAA
65 TGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATGTGCAA
* *
15815463 GTCGAGGATTAGCCCGGTCCCCCT-TGCAT
130 GTCGAGGATTGGCCCGGTCCCCCTCTGCGT
* * ** ** * **
15815492 GCTGTTGATTATGCTGCCGTAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTTCGT
1 ACTGTCGATCCTGCTGCCACAACCCTCGGTCT-GACTGGGGCTTAGACAT-GGAATGAACTTCGT
* * * * * * * * * * *
15815555 ATACATAAGTCAACCCATGAAACAAGTGTACGGGCACTGAGCCGATCGAAGAGGCATAATGCGCA
64 ATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATGTGCA
* * * *
15815620 AGCCAAGAATTGACCCGGTCCCCCTCTGCGT
129 AGTCGAGGATTGGCCCGGTCCCCCTCTGCGT
* * * * * *
15815651 ACTGTCGGTCTTGCTGCCACAACCCTTGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 ACTGTCGATCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTAT
* * * * *
15815716 GTATAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGTGCAAA
66 GCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATGTGCAAG
* *
15815781 TCGGGGATTGGCCCGGTCCCTC-CTGCGT
131 TCGAGGATTGGCCCGGTCCCCCTCTGCGT
* *
15815809 GCTG-CTGATCCTGCTGCCGCAACCCTCGGTC
1 ACTGTC-GATCCTGCTGCCACAACCCTCGGTC
15815840 CGGTCTGATC
Statistics
Matches: 267, Mismatches: 74, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 148 0.55
159 115 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (159 bp):
ACTGTCGATCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTAT
GCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATGTGCAAG
TCGAGGATTGGCCCGGTCCCCCTCTGCGT
Found at i:15819573 original size:18 final size:18
Alignment explanation
Indices: 15819550--15819591 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
15819540 TGCTGCCCTT
*
15819550 GACTCTGGCTCCTCGTCA
1 GACTCTGGCTCCTCATCA
15819568 GACTCTGGCTCCTCATCA
1 GACTCTGGCTCCTCATCA
15819586 GACTCT
1 GACTCT
15819592 TTGTCTACAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.38, G:0.19, T:0.29
Consensus pattern (18 bp):
GACTCTGGCTCCTCATCA
Found at i:15822622 original size:26 final size:26
Alignment explanation
Indices: 15822584--15822636 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15822574 GGCTCAAAAT
15822584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15822610 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15822636 C
1 C
15822637 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15822928 original size:196 final size:196
Alignment explanation
Indices: 15822581--15822936 Score: 502
Period size: 196 Copynumber: 1.8 Consensus size: 196
15822571 CATGGCTCAA
* *
15822581 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAA
1 AATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *** *
15822646 CCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCGGAGAGGTAGAATGTGTAAGTCGAGGATCGA
66 CCCACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCGAGGACCGA
* *
15822711 CCCGGTCCCCCTTGCGTGCTGTCAATCTTGATGCTGGTCCTGCTATCGTAACCCTCAGTCAGGTC
131 CCCGATCCCCCCTGCGTGCTGTCAATCTTGATGCTGGTCCTGCTATCGTAACCCTCAGTCAGGTC
15822776 C
196 C
* *
15822777 AATCTTAGACTAGGAATGAACTCCGTATGCTTATACATGTAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
*
15822842 CCCACGAAACGAGCGTG-AGG-GCACTCAGCCGACCGGAGAGGCAGAATGCACAAG-CTGGGGAC
66 CCCACGAAACGAGCGTGCAGGTG--CTCAGCCGACCGGAGAGGCAGAATGCACAAGTC-GAGGAC
*** * *
15822904 CGGTTCGATCCCCCCTGTGTGCTGTCGATCTTG
128 CGACCCGATCCCCCCTGCGTGCTGTCAATCTTG
15822937 CTACCGCAAC
Statistics
Matches: 139, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
194 1 0.01
195 4 0.03
196 134 0.96
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
AATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCGAGGACCGA
CCCGATCCCCCCTGCGTGCTGTCAATCTTGATGCTGGTCCTGCTATCGTAACCCTCAGTCAGGTC
C
Found at i:15823154 original size:159 final size:158
Alignment explanation
Indices: 15822805--15823301 Score: 401
Period size: 158 Copynumber: 3.1 Consensus size: 158
15822795 AACTCCGTAT
* * * *
15822805 GCTTATACATGTAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGACACTCAG
* * * * *
15822870 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGACCGGTTCGATCCCCCCTGTGTGCTGTCGATCT
66 CAGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGTCCGATCCCCCCTGCGTGCTGTCGATCC
* *
15822935 TGCTACCGCAACCCTCGGTCCGATCCGA
131 CGCTACCACAACCCTCGGTCCGATCCGA
* * * * ** *
15822963 TCTTAGAC-TGTGAATGAACTCCGTATGACTAAGTCAACCCACAAAACGAGCGTGTGGACGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGACACTCA
* * * ** * * * *
15823027 GTAGGCCGGAGAGGCATAATGTGCCAGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GCAGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGTCCGATCCCCC-CTGCGTGCTGTCGAT
* * * *
15823092 CCCGCTGCCACAACCCTCGGTCTGA-CTGGG
129 CCCGCTACCACAACCCTCGGTCCGATC-CGA
* * * * * * *
15823122 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGACACTCAG
* *** ** * * * * * **
15823187 CCGGTTGGAGAGGCAGAATGCGTAAGCCGAGGATC-GACTTGGTCCCCCCTGCGTGCTACCGATC
66 CAGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGTC-CGATCCCCCCTGCGTGCTGTCGATC
** * *
15823251 TTGCTACCGCAACCCTCGGTCC-AGTTCGA
130 CCGCTACCACAACCCTCGGTCCGA-TCCGA
*
15823280 TCTTAGAC-TAGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
15823302 ATATACTTAG
Statistics
Matches: 265, Mismatches: 66, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 141 0.53
159 118 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGACACTCAG
CAGACCGGAGAGGCAGAATGCACAAGCCGGGGACCGGTCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCCGATCCGA
Found at i:15823346 original size:343 final size:343
Alignment explanation
Indices: 15822976--15823701 Score: 981
Period size: 343 Copynumber: 2.1 Consensus size: 343
15822966 TAGACTGTGA
* * * * * *
15822976 ATGAACTCCGTATGACTAAGTCAACCCACAAAACGAGCGTG-TGG-ACGTTGAGTAGGCCGGAGA
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCAC--TCAGTAGACCAGAGA
** * ** * * *
15823039 GGCATAATGTGCCAGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
64 GGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCACA
* * *
15823104 ACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT
129 ACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACAAGAAAC
* ** *
15823169 GGGCATGTGGGCACTCAGCCGGTTGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTTGGTCCCC
194 GGGCATGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTTGGTCCCC
* *
15823234 CCTGCGTGCTACCGATCTTGCTACCGCAACCCTCGGTCC-AGTTCGATCTTAGACTAGGAATGAA
259 CCTACGTGCTACCGATCTTGCTACCGCAACCCTCAGTCCGA-TTCGATCTTAGACTAGGAATGAA
15823298 CTCCATATACTTAGACTAGGG
323 CTCCATATACTTAGACTAGGG
* * *
15823319 ATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCAGGCACTCAGTCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCACTCAGTAGACCAGAGAGG
* * * **
15823384 CATAATGCATAAGCCTGGGATCGACCCGATCCCTCTCTACGTGCTGTCGATCGTGCTGCCACAAC
66 CATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAAC
* *
15823449 CCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACACAAGAAACGG
131 CCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACAAGAAACGG
* * * * * *
15823514 GCGTGCGGGCACTCAGTCGGCCGGAGATGTAGAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCC
196 GCATGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTTGGTCCCCCC
** *
15823579 TACGTGCTACCGATCTTGCTGTCGCAACCCTCAGTCCGATTCGATCTTAGACTGGGAATGAACTC
261 TACGTGCTACCGATCTTGCTACCGCAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTC
* * *
15823644 CGTATGCTTAGACTGGGG
326 CATATACTTAGACTAGGG
* *
15823662 TTGAACTCCGTATGCCTAAATCAACCCACAAAATGAGCGT
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
15823702 ACGGTCGCTT
Statistics
Matches: 331, Mismatches: 49, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
343 326 0.98
344 3 0.01
345 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (343 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCACTCAGTAGACCAGAGAGG
CATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAAC
CCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACAAGAAACGG
GCATGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTTGGTCCCCCC
TACGTGCTACCGATCTTGCTACCGCAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAACTC
CATATACTTAGACTAGGG
Found at i:15823609 original size:501 final size:508
Alignment explanation
Indices: 15822609--15823650 Score: 1094
Period size: 501 Copynumber: 2.1 Consensus size: 508
15822599 AACTCCGTAT
* * **
15822609 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
* * * *
15822674 CCGGCCGGAGAGGTAGAATGTGTAAGTCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCAATCT
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGC-GT-AATCT
* * * *
15822739 TGATGCTGGTCCTGCTATCGTAACCCTCAGTCAGGTCCAATCTTAGACTAGGAATGAACTCCGTA
129 CGATGC--GT-CTGCTACCGCAACCCTCAGTCAGGTCCAATCTTAGACTAGGAATGAACTCCATA
* * * *
15822804 TGCTTATACATGTAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCACTCA
191 TACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCA
* *** **
15822869 GCCGACCGGAGAGGCAGAATGCACAAGCTGGGGACCGGTTCGATCCCCCCTGTGTGCTGTCGATC
256 GCCGACCAGAGAGGCAGAATGCACAAGCTGGGGACCGACCCGATCCCCCCTACGTGCTGTCGATC
* * * *
15822934 TTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGTGAATGAACTCCGTATGACTAAGTCA
321 GTGCTACCACAACCCTCGGTCCGATCCGAGCTTAGACTGTGAATGAACTCCGTATGACTAAGCCA
* * ** * * * *
15822999 ACCCACAAAACGAGCGTGTGGACGTTGAGTAGGCCGGAGAGGCATAATGTGCCAGCCGGGGATCG
386 ACACACAAAACGAGCGTGCGGACACTCAGTAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* ** * * * * *
15823064 GTCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGACTGGG
451 GTCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACTCGA
* * * **
15823122 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
** **
15823187 CCGGTTGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTTGGTCCCCCCTGCGTGC-T-A-C-CG
66 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCGTAATCTCG
* * *
15823248 AT-C-T-TGCTACCGCAACCCTCGGTCCA-GTTCGATCTTAGACTAGGAATGAACTCCATATACT
131 ATGCGTCTGCTACCGCAACCCTCAGT-CAGGTCCAATCTTAGACTAGGAATGAACTCCATATACT
* * * *
15823309 TAGAC-TAGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCA-GGCACTCAGT
195 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTG-AGGGCACTCAGC
* * * *
15823372 CGACCAGAGAGGCATAATGCATAAGCCT-GGGATCGACCCGATCCCTCTCTACGTGCTGTCGATC
258 CGACCAGAGAGGCAGAATGCACAAG-CTGGGGACCGACCCGATCCC-CCCTACGTGCTGTCGATC
* * * * * *
15823436 GTGCTGCCACAACCCTCGGTCTG-GCTGGGGCTTAGACATG-GAATGAACTTCC-TATGCCTAAG
321 GTGCTACCACAACCCTCGGTCCGATC-CGAGCTTAGAC-TGTGAATGAAC-TCCGTATGACTAAG
* * * * *
15823498 CCAACACA-AGAAACGGGCGTGCGGGCACTCAGTCGGCCGGAGATGTAGAATGCGCAAGCCGGGG
383 CCAACACACA-AAACGAGCGTGCGGACACTCAGTAGGCCGGAGAGGCAGAATGCGCAAGCCGGGG
* ** * * *
15823562 ATCGG-CTTGGTCCCCC-CTACGTGCTACCGATCTTGCTGTCGCAACCCTCAGTCCGATTCGA
447 ATCGGTC-CGGTCCCCCTCTACGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACTCGA
*
15823623 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
15823651 TTAGACTGGG
Statistics
Matches: 437, Mismatches: 81, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
500 2 0.00
501 193 0.44
502 125 0.29
503 6 0.01
506 1 0.00
507 3 0.01
508 1 0.00
509 1 0.00
511 1 0.00
513 104 0.24
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (508 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCGTAATCTCG
ATGCGTCTGCTACCGCAACCCTCAGTCAGGTCCAATCTTAGACTAGGAATGAACTCCATATACTT
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCACTCAGCCGA
CCAGAGAGGCAGAATGCACAAGCTGGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCGTGCT
ACCACAACCCTCGGTCCGATCCGAGCTTAGACTGTGAATGAACTCCGTATGACTAAGCCAACACA
CAAAACGAGCGTGCGGACACTCAGTAGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTCCG
GTCCCCCTCTACGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACTCGA
Found at i:15823653 original size:26 final size:26
Alignment explanation
Indices: 15823624--15823676 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15823614 CCGATTCGAT
15823624 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
15823650 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15823676 C
1 C
15823677 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15824681 original size:26 final size:26
Alignment explanation
Indices: 15824652--15824704 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15824642 CTGATCTAAT
*
15824652 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGAG-ATCAACTCTGTATG
15824678 CTTAGACTGGAGATCAACTCTGTATG
1 CTTAGACTGGAGATCAACTCTGTATG
15824704 C
1 C
15824705 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATCAACTCTGTATG
Found at i:15825425 original size:26 final size:26
Alignment explanation
Indices: 15825387--15825439 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15825377 GGCTCAAACT
*
15825387 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15825413 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15825439 C
1 C
15825440 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15827528 original size:26 final size:26
Alignment explanation
Indices: 15827492--15827544 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15827482 GTTGCTTTAG
15827492 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15827518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15827544 G
1 G
15827545 GGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15828227 original size:26 final size:26
Alignment explanation
Indices: 15828191--15828243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15828181 GTTGACTTAG
*
15828191 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
15828217 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15828243 G
1 G
15828244 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15828731 original size:26 final size:24
Alignment explanation
Indices: 15828702--15828751 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
15828692 GCATATGGAG
15828702 TTCATTCC-ATGTCTAAGCATACAGAC
1 TTCATTCCTA-GTCTAAG-AT-CAGAC
15828728 TTCATTCCTAGTCTAAGATCAGAC
1 TTCATTCCTAGTCTAAGATCAGAC
15828752 CGGACTGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 15 0.65
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (24 bp):
TTCATTCCTAGTCTAAGATCAGAC
Found at i:15829235 original size:26 final size:26
Alignment explanation
Indices: 15829205--15829257 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15829195 GATGACTTAG
15829205 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15829231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15829257 G
1 G
15829258 ATCTGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15829716 original size:158 final size:155
Alignment explanation
Indices: 15829231--15829721 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 155
15829221 CCCAGTCTAA
* * *
15829231 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
15829296 GCACGTA-GGGGGACCGGGCTGATCCCCGACTTGCGCATTTTGACACTCTGATCGGCTG--AGCA
66 GCACGCAGGGGGGACCGGGCAGATCCCCGACTTGCGCATTATG--ACTCT--TCGGCTGTAAG-T
* * *
15829358 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CCCGAACGCTCGTTTTGTGGGTTGGCTTAG
* * ** * * * *
15829388 GCATAGGGAGTTCATT-CCATATCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * *
15829450 ACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAA
63 ACAGCACGCAG-GGGGGACCGGGCAGATCCCCGACTTGCGCATTATGACTCTTCGG-CTG-T-AA
* *
15829515 CGT-CTGAACGCTCGTTTTGTGGGTTGACTTAG
124 -GTCCCGAACGCTCGTTTTGTGGGTTGGCTTAG
*
15829547 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
15829612 GCACGCAGGGGGGATCGGGTCAG-TCCCTGGCTTGCGTATTCTGTCTCTTCGGCTGATTAAGTGC
66 GCACGCAGGGGGGACCGGG-CAGATCCCCGACTTGCGCATTATGACTCTTCGGCTG--TAAGT-C
*
15829676 CCGTACGCTCGTTTTGTGGGTTGGCTTAG
127 CCGAACGCTCGTTTTGTGGGTTGGCTTAG
15829705 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
15829722 TATGCTTAGG
Statistics
Matches: 269, Mismatches: 47, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
155 3 0.01
156 8 0.03
157 59 0.22
158 81 0.30
159 112 0.42
160 5 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCAGATCCCCGACTTGCGCATTATGACTCTTCGGCTGTAAGTCCCGA
ACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:15830213 original size:26 final size:26
Alignment explanation
Indices: 15830184--15830236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15830174 GTTGGCTTAG
15830184 GCATACGAAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
*
15830210 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
15830236 G
1 G
15830237 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:15830944 original size:26 final size:26
Alignment explanation
Indices: 15830908--15830962 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
15830898 GTTGACTTAG
*
15830908 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTAATTCCT-AGTCTAA
15830934 GCATACAGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCTAGTCTAA
15830960 GCA
1 GCA
15830963 CGCAAGGGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCTAGTCTAA
Found at i:15831394 original size:158 final size:157
Alignment explanation
Indices: 15830989--15831396 Score: 362
Period size: 159 Copynumber: 2.6 Consensus size: 157
15830979 CTGATCCCTG
* * * *
15830989 GCTTGCGCATTCTGCCTCTCCGACCAGCTAAGCACCCGCACGC-CTATTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCCGCACGCTC-GTTTCGTGGGTT-GCTTAG
* * * ** *
15831053 GCATAGGGAGTTCATTCCATGTCTAAGCTCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCAACA
64 GCATACGGAGTTCATTCCATGTCTAAGATCCAGTCAGACTGAGGGTTGCAGCAGCAGGACCAACA
** *
15831118 GCACGTAGAGGGGGACTGGGTTGATCCTC
129 GCACGTAGAGGGGGACTGGGCCGATCCCC
* * * * ** *
15831147 GACTTGCACTTTATGCCTCT-TCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACATA
1 G-CTTGCGCATTCTGCCTCTCT-GGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTG-CTTA
* * * * * * * *
15831211 GGCTTATGGAGTTCCTTTC-TAGTCTAAGATCGTAG-CAGA-TCGAGGGTTGCAGTAGTAGGATC
63 GGCATACGGAGTTCATTCCAT-GTCTAAGATC-CAGTCAGACT-GAGGGTTGCAGCAGCAGGACC
* * *
15831273 GACAGCACGTAG-TGGGGA-TCGGGCCGGTCCCC
125 AACAGCACGTAGAGGGGGACT-GGGCCGATCCCC
* * *
15831305 AGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTAGCTTAG
1 -GCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT-GCTTAG
15831370 GCATACGGAGTTCATTCCATGTCTAAG
64 GCATACGGAGTTCATTCCATGTCTAAG
15831397 CCCCAGCTAA
Statistics
Matches: 195, Mismatches: 43, Indels: 24
0.74 0.16 0.09
Matches are distributed among these distances:
157 1 0.01
158 88 0.45
159 103 0.53
160 3 0.02
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.26
Consensus pattern (157 bp):
GCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGATCCAGTCAGACTGAGGGTTGCAGCAGCAGGACCAACAGC
ACGTAGAGGGGGACTGGGCCGATCCCC
Found at i:15831434 original size:158 final size:157
Alignment explanation
Indices: 15830989--15831436 Score: 388
Period size: 158 Copynumber: 2.8 Consensus size: 157
15830979 CTGATCCCTG
* * * *
15830989 GCTTGCGCATTCTGCCTCTCCGACCAGCTAAGCACCCGCACGC-CTATTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCCGCACGCTC-GTTTCGTGGGTT-GCTTAG
* * * * * * *
15831053 GCATAGGGAGTTCATTCCATGTCTAAGCTCCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCAAC
64 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGACCGAGGGTTGTGGTAGCAGGACCGAC
** *
15831117 AGCACGTAGAGGGGGACTGGGTTGATCCTC
128 AGCACGTAGAGGGGGACTGGGCCGATCCCC
* * * * ** *
15831147 GACTTGCACTTTATGCCTCT-TCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACATA
1 G-CTTGCGCATTCTGCCTCTCT-GGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTG-CTTA
* * * * * ** * ** * *
15831211 GGCTTATGGAGTTCCTTTC-TAGTCTAAGATCGTAGC-AGATCGAGGGTTGCAGTAGTAGGATCG
63 GGCATACGGAGTTCATTCCAT-GTCTAAG-CCCCAGCTAGACCGAGGGTTGTGGTAGCAGGACCG
* *
15831274 ACAGCACGTAG-TGGGGA-TCGGGCCGGTCCCC
126 ACAGCACGTAGAGGGGGACT-GGGCCGATCCCC
* * *
15831305 AGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTAGCTTAG
1 -GCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT-GCTTAG
* *
15831370 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAAACCGAGGGTTGTGGTAGCAAGACCGACA
64 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGTAGCAGGACCGACA
15831435 GC
129 GC
15831437 GGGATTGACA
Statistics
Matches: 220, Mismatches: 57, Indels: 26
0.73 0.19 0.09
Matches are distributed among these distances:
157 5 0.02
158 112 0.51
159 100 0.45
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
GCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGTAGCAGGACCGACAGC
ACGTAGAGGGGGACTGGGCCGATCCCC
Found at i:15832583 original size:26 final size:26
Alignment explanation
Indices: 15832533--15832585 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15832523 GTTGGCTTAG
*
15832533 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
15832559 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15832585 G
1 G
15832586 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15833293 original size:26 final size:26
Alignment explanation
Indices: 15833255--15833307 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15833245 GTTGACTTAG
15833255 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15833281 GCATACGGTGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15833307 G
1 G
15833308 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15833739 original size:11 final size:11
Alignment explanation
Indices: 15833720--15833752 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15833710 CTCGGGGCAC
15833720 CATCATCGGAG
1 CATCATCGGAG
*
15833731 CATCGTCGGAG
1 CATCATCGGAG
15833742 CATCATCGGAG
1 CATCATCGGAG
15833753 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.18
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:15833998 original size:26 final size:26
Alignment explanation
Indices: 15833968--15834020 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15833958 GTTGGCTTAG
*
15833968 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15833994 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15834020 G
1 G
15834021 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15834679 original size:157 final size:155
Alignment explanation
Indices: 15834459--15834870 Score: 470
Period size: 157 Copynumber: 2.6 Consensus size: 155
15834449 GAACCGGGCT
* * * * *
15834459 GATCCTCGACTTGCGCATTTTGCCTCTTCGGCCGGCTGAGCGCCTGCACGCCCGTTTTATGGGTT
1 GATCCTAG-CTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * **
15834524 GGCTTAGGTATAGGGAGTTCATTCCATGTCTAAG-TGCCAGCCGGATCGAGGGTTGTGGCAGTGG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATG-CA-CCGGA-CGAGGGTTGTAGCAGCAG
15834588 GA-CTGACAGCA-AGCAGAGGGGACCGAGTC
127 GATC-GACAGCATA-CAGAGGGGACCGAGTC
* * * *
15834617 GATCCTAGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTG
1 GATCCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
15834682 ACTTATGCATACGGAGTTCATTCCATGTCTAAGATTGGACCGGACGAGGGTTGTAGCAGCAGGAT
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGA-TGCACCGGACGAGGGTTGTAGCAGCAGGAT
* * * *
15834747 CGACAGCATACAGGGGGGACTGGGTT
130 CGACAGCATACAGAGGGGACCGAGTC
** * * * * * *
15834773 GATCCCCGGCTTGTGCATTCTACCTCTCCGGCTGGCTGAGCCCCCGCACGCTCGTTTCATGGGTT
1 GAT-CCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
15834838 GGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15834871 ACATACAGAG
Statistics
Matches: 214, Mismatches: 35, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
156 39 0.18
157 165 0.77
158 8 0.04
159 2 0.01
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.26
Consensus pattern (155 bp):
GATCCTAGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGATGCACCGGACGAGGGTTGTAGCAGCAGGATC
GACAGCATACAGAGGGGACCGAGTC
Found at i:15836206 original size:158 final size:155
Alignment explanation
Indices: 15835763--15836209 Score: 406
Period size: 158 Copynumber: 2.8 Consensus size: 155
15835753 CCCAGACTAA
* * * * * *
15835763 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCCAATCGAGGGTTACGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCCGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * *
15835828 GCACGCAAGAGGGACCGGGTCGAT-CCCGGCTT-ACGCATTCTGCCTCTCTGGGCGACTGAGCTC
66 GCACGTAGGGGGGA-CGGGCCGATCCCCGGCTTGA-GCATTCTGCCTCTCT--GCGGCTGAGCGC
**
15835891 CCGCACGCTCATTTCATGGGTTGGTTTAG
127 CCGCACGCTCATTTCATGGGTTGACTTAG
* * ** * * *
15835920 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGTTATGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGAGCC-GACCGAGGGTTACGGCAGCAGGATCGA
* * *
15835983 C--CACGTGCAGAGGGGGACGGGCCGATCCTCGGCTTGAGCATTATGCCTCT-TCGACCGGCTCA
64 CAGCACGT--AG-GGGGGACGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCT-G--CGGCTGA
* * *
15836045 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
123 GCGCCCGCACGCTCATTTCATGGGTTGACTTAG
*
15836078 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-CCGGACCGAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCC-GACCGAGGGTTACGGCAGCAGGATCGAC
* ** *
15836142 AGCACGTAGGGGGGACTAGGCCGATCCCCAACTTGTGCATTCTGCCTCTCCTGCTGGCTGAGCGC
65 AGCACGTAGGGGGGAC-GGGCCGATCCCCGGCTTGAGCATTCTGCCTCT-CTGC-GGCTGAGCGC
15836207 CCG
127 CCG
15836210 TTTCGTGGGT
Statistics
Matches: 229, Mismatches: 44, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
155 4 0.02
156 7 0.03
157 61 0.27
158 144 0.63
159 7 0.03
160 6 0.03
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGAGCCGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGTAGGGGGGACGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCTGCGGCTGAGCGCCCGC
ACGCTCATTTCATGGGTTGACTTAG
Found at i:15836455 original size:26 final size:26
Alignment explanation
Indices: 15836419--15836471 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15836409 GTTGGCTTAG
15836419 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15836445 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15836471 G
1 G
15836472 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15837116 original size:26 final size:26
Alignment explanation
Indices: 15837080--15837129 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15837070 GACTTAGGCA
15837080 TACGGAGTTCA-TCCCAAGTCTAAGCG
1 TACGGAGTTCATTCCC-AGTCTAAGCG
15837106 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15837130 ATCGGACGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:15837402 original size:158 final size:158
Alignment explanation
Indices: 15837136--15837445 Score: 410
Period size: 158 Copynumber: 2.0 Consensus size: 158
15837126 TAAGATCGGA
* *
15837136 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGAGGGACCGAGCCGATCCTCGACTTG
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGAGGGACCGAGCCGATCCTCGACTTG
* * * *
15837201 CGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCACACGCCCGTTTCATTGG-TTGGCTTAGGCATA
66 CGCATTATGCCTCTCCGACAGGCTAAGCGCCCACACGCCCGTTTCA-TGGTTTGGCTTAGGCATA
* *
15837265 GGGAGTTCATTCCATGTCTAAGCCCCAGC
130 CGGAGTTAATTCCATGTCTAAGCCCCAGC
* * * *
15837294 CGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCA-GAGGGGACCGAGCCGATCC-CTGACT
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGA-GGGACCGAGCCGATCCTC-GACT
* * * * **
15837357 TGCGCATTATGCCTCTCCGATAGGCTGAGTGCCCGCACGTTCGTTTCATGGTTTGGCTTAGGCAT
64 TGCGCATTATGCCTCTCCGACAGGCTAAGCGCCCACACGCCCGTTTCATGGTTTGGCTTAGGCAT
15837422 ACGGAGTTAATTCCATGTCTAAGC
129 ACGGAGTTAATTCCATGTCTAAGC
15837446 ATATGGAGTT
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
157 6 0.05
158 125 0.95
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGAGGGACCGAGCCGATCCTCGACTTG
CGCATTATGCCTCTCCGACAGGCTAAGCGCCCACACGCCCGTTTCATGGTTTGGCTTAGGCATAC
GGAGTTAATTCCATGTCTAAGCCCCAGC
Found at i:15837454 original size:26 final size:25
Alignment explanation
Indices: 15837418--15837469 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15837408 TTTGGCTTAG
15837418 GCATACGGAGTTAATTCCATGTCTAA
1 GCATACGGAGTTAATTCCA-GTCTAA
* *
15837444 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTAATTCCAGTCTAA
15837469 G
1 G
15837470 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTAATTCCAGTCTAA
Found at i:15837661 original size:354 final size:341
Alignment explanation
Indices: 15837041--15838010 Score: 926
Period size: 354 Copynumber: 2.7 Consensus size: 341
15837031 TTCGGTCGGT
* * *
15837041 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCG
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATCCCAAGTCTAAGCA
* *
15837106 TACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
66 TACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* *
15837171 GTAGGAGGGACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCACA
131 GCAGGAGGGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCACA
* * * *
15837236 CGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
196 CGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCG
*
15837301 AGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGACCGAGCCGATCCCTGACTTGCGCATTA
261 AGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGGGGACCGAGCCGATCCCTGACTTGCGCATTA
15837366 TGCCTCTCCGATAGGC
326 TGCCTCTCCGATAGGC
* * * * * *
15837382 TGAGTGCCCGCACGTTCGTTTCATGGTTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATCCCAAGTCTAAGCA
*
15837447 TATGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGTCCAGCAGTA
66 TACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTT--G-C----GG--CAGC---A
** * * * * *
15837511 GGATCGGTAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCG
118 GGATCGACAGCACGCAG-GAGGGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCG
** *
15837576 G-T-AGCGCACC-CGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCGTTCCATGTCT
182 GTTAAGCGC-CCAC--ACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
15837638 AAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGGACCGATGACGGGATTGACAGCACGCAGAGGG
244 AAGCCCCAACCAGACCGAGGGTTGTGGTAGCAGGA-C-----C--G---G-CAGCACGCAGA-GG
* * * * * * *
15837703 GGACTGGGCTGATCCC-CAGCTTGTGCATTATGCCTCTCCAGTCGGCCTCTCCGATCGGT
296 GGACCGAGCCGATCCCTGA-C-T-TGC-----GCAT-T--A-T--GCCTCTCCGATAGGC
* * * * ** *
15837762 TGAGTGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTTAGTCTAACCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATCCCAAGTCTAAGCA
* * * * *
15837827 TACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATC-AAAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * * * * * * ** * *
15837891 CGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTACCTCTCTGGCCGACTGAGCGCCCGC
130 CGCAGGAGGGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCAC
* * *
15837956 ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
195 ACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
15838011 TATTCAGATT
Statistics
Matches: 513, Mismatches: 68, Indels: 70
0.79 0.10 0.11
Matches are distributed among these distances:
340 15 0.03
341 80 0.16
343 1 0.00
344 1 0.00
348 2 0.00
350 4 0.01
352 6 0.01
353 18 0.04
354 118 0.23
355 1 0.00
360 1 0.00
362 1 0.00
365 1 0.00
366 12 0.02
367 105 0.20
368 13 0.03
369 15 0.03
372 4 0.01
374 4 0.01
375 1 0.00
377 1 0.00
378 2 0.00
379 1 0.00
380 78 0.15
381 28 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (341 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATCCCAAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
GCAGGAGGGACCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGTTAAGCGCCCACA
CGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCG
AGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGGGGACCGAGCCGATCCCTGACTTGCGCATTA
TGCCTCTCCGATAGGC
Found at i:15837829 original size:26 final size:26
Alignment explanation
Indices: 15837799--15837849 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15837789 TTGACTTAGG
*
15837799 CATACGGAGTTCA-TCCTTAGTCTAAC
1 CATACGAAGTTCATTCC-TAGTCTAAC
15837825 CATACGAAGTTCATTCCTAGTCTAA
1 CATACGAAGTTCATTCCTAGTCTAA
15837850 GATCGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAC
Found at i:15843483 original size:158 final size:158
Alignment explanation
Indices: 15843039--15843520 Score: 574
Period size: 158 Copynumber: 3.0 Consensus size: 158
15843029 TTCATCCCCA
* * * *
15843039 GTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATTGACAGCACACAAGGGGGACCAGGC
1 GTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGGGGGGACCGGGC
* * * * *
15843104 CAATCCCCGGCTTGTGCATTCTGCCTATCCGGCCGACTGAGTGCCCGCACGCCCGTTTCATGTGT
66 CAATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
15843169 TGGCTTAGGCATAGGGAGTTCACTCCAT
131 TGGCTTAGGCATACGGAGTTCATTCCAT
** ** * ** * *
15843197 GTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGTGGACCGG
1 GTCTAAG-ATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAG-GGGGGACCGG
** *** * * * *
15843261 GCTGATCCCCAGCTTGCATATTATGCCTCTCCGGCC-AGCTCAACGCCCGAACGCTCGTTTCATG
64 GCCAATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGA-CTGAGCGCCCGCACGCTCGTTTCATG
* *
15843325 GGTTGACTTAGGCATACAGAGTTCATTCCCA-
128 GGTTGGCTTAGGCATACGGAGTTCATT-CCAT
* * *
15843356 GTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCAGGATCGACAGTACACAGGGGGGACCGGGC
1 GTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGGGGGGACCGGGC
* * *
15843421 CAATCCCCAGCTTGTGGATTCTGTCTCTCCAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
66 CAATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
15843486 TGGCTTAGGCATACGGAGTTCATTCCAT
131 TGGCTTAGGCATACGGAGTTCATTCCAT
15843514 GTCTAAG
1 GTCTAAG
15843521 CATACGGAGT
Statistics
Matches: 261, Mismatches: 56, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 133 0.51
159 122 0.47
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
GTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGGGGGGACCGGGC
CAATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCAT
Found at i:15843524 original size:26 final size:26
Alignment explanation
Indices: 15843494--15843546 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15843484 GTTGGCTTAG
15843494 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15843520 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15843546 G
1 G
15843547 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15843726 original size:26 final size:26
Alignment explanation
Indices: 15843690--15843742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15843680 GTTGACTTAG
15843690 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15843716 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15843742 G
1 G
15843743 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15845281 original size:159 final size:155
Alignment explanation
Indices: 15844959--15845421 Score: 437
Period size: 159 Copynumber: 2.9 Consensus size: 155
15844949 TAGACTGGAT
* * * * * *
15844959 CGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGACGGGTCGATCCCTGGCTTGCACACT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCA-GCAAGGGGGACGGGCCGATCCCCGGCTTGCACATT
* * * *
15845024 CTGCCTCTCCGGCCGACTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
65 CTGCCTCTCC-GACGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
*
15845089 CATTCCATGTCTAAGCCCCAGCCAGAC
129 CATTCCATATCTAAGCCCCAGCCAGAC
* * * * *
15845116 CCAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGATCGGGCCAACCCCCGGCTTGCACA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCA-GC-AAGGGGGA-CGGGCCGATCCCCGGCTTGCACA
* * * * * *
15845181 TTATGCCTCTCTGATCGACTTAGTGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAG
63 TTCTGCCTCTCCGA-CGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* ** * *
15845246 TTCATTCCCA-ATCTAAGATCGGATCGA-AC
127 TTCATT-CCATATCTAAG-CCCCAGCCAGAC
* * * * * * *
15845275 TGAGGGTTGTGGTAACAGGATCGACAGCA-CGAAGGGGGAGCTGGGCCGATCCTCGACTTACGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCAGC-AAGGGGGA-C-GGGCCGATCCCCGGCTTGCACA
* ** *
15845339 TTCTGCCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAG
63 TTCTGCCTCTCCGAC-GACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* *
15845404 TTCACTCCATGTCTAAGC
127 TTCATTCCATATCTAAGC
15845422 ATATGGAGTT
Statistics
Matches: 243, Mismatches: 55, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 40 0.16
158 88 0.36
159 108 0.44
160 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (155 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCAGCAAGGGGGACGGGCCGATCCCCGGCTTGCACATTC
TGCCTCTCCGACGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATATCTAAGCCCCAGCCAGAC
Found at i:15845423 original size:26 final size:26
Alignment explanation
Indices: 15845394--15845446 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15845384 GTTGGCTTAG
15845394 GCATACGGAGTTCACTC-CATGTCTAA
1 GCATACGGAGTTCACTCGCA-GTCTAA
* *
15845420 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCACTCGCAGTCTAA
15845446 G
1 G
15845447 ATGGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCGCAGTCTAA
Found at i:15845942 original size:26 final size:26
Alignment explanation
Indices: 15845906--15845958 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15845896 GTTGGCTTAG
15845906 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
15845932 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15845958 G
1 G
15845959 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15845999 original size:12 final size:12
Alignment explanation
Indices: 15845982--15846026 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
15845972 GAGGGTTGTG
*
15845982 GTAGCAGGAACA
1 GTAGCAGGATCA
15845994 GTAGCAGGATC-
1 GTAGCAGGATCA
*
15846005 GACAGCAGGATCA
1 G-TAGCAGGATCA
15846018 GTAGCAGGA
1 GTAGCAGGA
15846027 CCAGCAGCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 1 0.04
12 26 0.93
13 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.36, T:0.11
Consensus pattern (12 bp):
GTAGCAGGATCA
Found at i:15846035 original size:12 final size:12
Alignment explanation
Indices: 15845984--15846035 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
15845974 GGGTTGTGGT
* *
15845984 AGCAGGAACAGT
1 AGCAGGATCAGC
15845996 AGCAGGATC-GAC
1 AGCAGGATCAG-C
*
15846008 AGCAGGATCAGT
1 AGCAGGATCAGC
*
15846020 AGCAGGACCAGC
1 AGCAGGATCAGC
15846032 AGCA
1 AGCA
15846036 TGCAGGGGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
11 1 0.03
12 31 0.94
13 1 0.03
ACGTcount: A:0.37, C:0.23, G:0.33, T:0.08
Consensus pattern (12 bp):
AGCAGGATCAGC
Found at i:15846326 original size:26 final size:26
Alignment explanation
Indices: 15846278--15846330 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15846268 GTTGACTTAG
*
15846278 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
* * *
15846304 GCATATGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
15846330 G
1 G
15846331 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:15846739 original size:29 final size:29
Alignment explanation
Indices: 15846697--15846760 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
15846687 TCAGATCAGA
15846697 CTAAGAGGCATACAGAGTTCATTCCTAGT
1 CTAAGAGGCATACAGAGTTCATTCCTAGT
15846726 CTAAGAGGCATACAGAGTTCATTCCTAGT
1 CTAAGAGGCATACAGAGTTCATTCCTAGT
15846755 CTAAGA
1 CTAAGA
15846761 TCAGATCGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (29 bp):
CTAAGAGGCATACAGAGTTCATTCCTAGT
Found at i:15846930 original size:26 final size:26
Alignment explanation
Indices: 15846892--15846944 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15846882 GTTGGCTTAG
15846892 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15846918 GCATACAGG-GTTCATTCCCAGTCTAA
1 GCATAC-GGAGTTCATTCCCAGTCTAA
15846944 G
1 G
15846945 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15847341 original size:26 final size:26
Alignment explanation
Indices: 15847305--15847355 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15847295 TTGACTTAGG
15847305 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
*
15847331 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
15847356 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:15847821 original size:158 final size:155
Alignment explanation
Indices: 15847331--15847830 Score: 529
Period size: 159 Copynumber: 3.2 Consensus size: 155
15847321 CCAGTCTAAA
* *
15847331 CATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCC
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
15847395 GCATGCAGGGGGACCGAGCCGATCCCCGGCTTTCACATTTTGCCTCTCCGGTCGGCTGAGCACCC
64 GCATGCAGGGGGATCGGGCCGAT-CCCAGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCACCC
* * *
15847460 GCATGCCCGTTTCATGGGTTGGCTTAGG
128 GCACGCTCGTTTAATGGGTTGGCTTAGG
* ** * *
15847488 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCAGGATCGGTA
1 CATACGGAGTTCATTCCATGTCTAAG-ATCAGACCG-ACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
15847552 GCATGCAAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
64 GCATGC--AGGGGGATCGGGCCGATCCCAG-CTTGCACATTATGCCTCTCCGGTCGGCTGAGCAC
* * * ** *
15847617 CTGTACGCTTGTTTTGTGGGTTGACTTAGG
126 CCGCACGCTCGTTTAATGGGTTGGCTTAGG
*
15847647 CATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * ** * * *
15847711 GCATGCAGGGGGGATAGGGCCGGTCCTTAGCTGGCTTATTCTGCATCTCCGGTCAGCTGAGCACC
64 GCATGCA-GGGGGATCGGGCCGATCC-CAGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCACC
*
15847776 CGCACGCTCATTTAATGGGTTGGCTTAGG
127 CGCACGCTCGTTTAATGGGTTGGCTTAGG
*
15847805 CATACGGAGTTAATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
15847831 CATACAAAGT
Statistics
Matches: 280, Mismatches: 51, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
156 4 0.01
157 57 0.20
158 95 0.34
159 120 0.43
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
ATGCAGGGGGATCGGGCCGATCCCAGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCACCCGCA
CGCTCGTTTAATGGGTTGGCTTAGG
Found at i:15848139 original size:13 final size:13
Alignment explanation
Indices: 15848121--15848147 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15848111 TAAGCATTAT
15848121 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
15848134 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
15848147 G
1 G
15848148 TTGAGCGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.44, G:0.33, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:15848580 original size:159 final size:159
Alignment explanation
Indices: 15848133--15848583 Score: 502
Period size: 159 Copynumber: 2.8 Consensus size: 159
15848123 CTCTCCGGTC
* * *
15848133 GGCCTCTCCGGTCGGTTGAGCGCTCGC-ATGCTCGTTTCATAGGTTGACTTAGGCATATGGAGTT
1 GGCCTCTCCGATCGGTTGAGCGCTC-CAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * *
15848197 TA-TCCCAAGTCTGAGATCGAATCGAACCGAGGGTTGCA--AGATCAGGATCGACAGCACG-AAG
65 CATTCCC-AGTCTAAGATCGAATCGAACCGAGGGTTGCAGCAG-T-AGGATCGACAGCACGCAGG
* *
15848258 GGGGGATCGGGACGGTCCCCGGCTTACGCATTT
127 GGGGGATCGGGACGATCCCCGGCTTACGCATTA
* * ** * * *
15848291 TGCCTCTCCGATCGGTTGAGCAC-CCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
1 GGCCTCTCCGATCGGTTGAGCGCTCCA-ATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
** * * * * ** * * * *
15848355 CATT-CCATGTCTAAGCCCCAGTCGGACCGATGGTTGTGGCAGCAGAATCGACAGCACACAGAGG
65 CATTCCCA-GTCTAAGATCGAATCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGG
* *
15848419 GGGATCGGGTCGATCCCCGGCTTGCGCATTA
129 GGGATCGGGACGATCCCCGGCTTACGCATTA
* *
15848450 GGCCTCTCCGACCGGTTCAGCGCTCCAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GGCCTCTCCGATCGGTTGAGCGCTCCAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* *
15848515 ATTCCCAGTCTAAGATCGAATCAAACCGAGGGTTGCAGCAGTAGGATCGATAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGG
15848580 GATC
131 GATC
15848584 ATTCCAGTCC
Statistics
Matches: 233, Mismatches: 51, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 88 0.38
159 134 0.58
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
GGCCTCTCCGATCGGTTGAGCGCTCCAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGG
GATCGGGACGATCCCCGGCTTACGCATTA
Found at i:15848615 original size:159 final size:159
Alignment explanation
Indices: 15848134--15848677 Score: 485
Period size: 159 Copynumber: 3.4 Consensus size: 159
15848124 TCTCCGGTCG
* * * *
15848134 GCCTCTCCGGTCGGTTGAGCGCTCGC-ATGCTCGTTTCATAGGTTGACTTAGGCATATGGAGTTT
1 GCCTCTCCGATCGGTTGAGCGCTC-CAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* *
15848198 A-TCCCAAGTCTGAGATCGAATCGAACCGAGGGTTGCA--AGATCAGGATCGACAGCACG-AAGG
65 ATTCCC-AGTCTAAGATCGAATCGAACCGAGGGTTGCAGCAG-T-AGGATCGACAGCACGCAGGG
** * *
15848259 GGGGATCGGGACGGTCCCCGGCTTACGCATTTT
127 GGGGATCGGTCCAGTCCCCGGCTTACGCATTAT
* ** * * *
15848292 GCCTCTCCGATCGGTTGAGCAC-CCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
1 GCCTCTCCGATCGGTTGAGCGCTCCA-ATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
** * * * * ** * * * *
15848356 ATT-CCATGTCTAAGCCCCAGTCGGACCGATGGTTGTGGCAGCAGAATCGACAGCACACAGAGGG
65 ATTCCCA-GTCTAAGATCGAATCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGG
* * *
15848420 GGATCGGGTCGA-TCCCCGGCTTGCGCATTAG
129 GGATC-GGTCCAGTCCCCGGCTTACGCATTAT
* *
15848451 GCCTCTCCGACCGGTTCAGCGCTCCAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGGTTGAGCGCTCCAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
15848516 TTCCCAGTCTAAGATCGAATCAAACCGAGGGTTGCAGCAGTAGGATCGATAGCACGCAGGGGGGG
66 TTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGG
** * * *
15848581 ATCATTCCAGTCCCCAGCTTACGTATTCT
131 ATCGGTCCAGTCCCCGGCTTACGCATTAT
* * * * * * ** * * * *
15848610 ACCTCTCTGGTCGGCTGAGCTC-CCGCATGCTTATTTCGTGGGTTGGCTTCGGCATACAGAGTTC
1 GCCTCTCCGATCGGTTGAGCGCTCC-AATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
15848674 ATTC
65 ATTC
15848678 AATGTCTAAG
Statistics
Matches: 300, Mismatches: 74, Indels: 23
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 93 0.31
159 194 0.65
160 10 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCCTCTCCGATCGGTTGAGCGCTCCAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGG
ATCGGTCCAGTCCCCGGCTTACGCATTAT
Found at i:15848902 original size:26 final size:26
Alignment explanation
Indices: 15848872--15848922 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15848862 TGACTTAGGC
15848872 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
15848898 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
15848923 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:15849271 original size:28 final size:28
Alignment explanation
Indices: 15849218--15849274 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
15849208 GTTGGCTCAG
*
15849218 GCATACGGACGTTCATTCCAATGTCTAA
1 GCATACGGACGTTCATTCCAAGGTCTAA
* *
15849246 GCATATGGA-GTTCATTCCCTAGGTCTAA
1 GCATACGGACGTTCATT-CCAAGGTCTAA
15849274 G
1 G
15849275 AAGTTTGAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (28 bp):
GCATACGGACGTTCATTCCAAGGTCTAA
Found at i:15850402 original size:26 final size:26
Alignment explanation
Indices: 15850351--15850403 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850341 GTTGGCATAG
*
15850351 GCATACAGAGTTCAGTCCATGTCTAA
1 GCATACAGAGTTCAGTCCATGACTAA
* *
15850377 GCATACGGAGTTCATTCCCA-GACTAA
1 GCATACAGAGTTCAGT-CCATGACTAA
15850403 G
1 G
15850404 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCATGACTAA
Found at i:15850753 original size:26 final size:26
Alignment explanation
Indices: 15850717--15850769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850707 GTTGACTTAG
* *
15850717 GCATACGGAGTTCATACCCCGTCTAA
1 GCATACGGAGTTAATACCCAGTCTAA
*
15850743 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATACCCAGTCTAA
15850769 G
1 G
15850770 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATACCCAGTCTAA
Found at i:15851603 original size:26 final size:26
Alignment explanation
Indices: 15851556--15851608 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15851546 GTTGACTTAG
* * *
15851556 GCATACGGAGTTCATCCGCAGTGTAA
1 GCATACGAAATTCATCCGCAGTCTAA
15851582 GCATACGAAATTCATTCC-CAGTCTAA
1 GCATACGAAATTCA-TCCGCAGTCTAA
15851608 G
1 G
15851609 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCGCAGTCTAA
Found at i:15851883 original size:158 final size:158
Alignment explanation
Indices: 15851615--15852081 Score: 381
Period size: 158 Copynumber: 3.0 Consensus size: 158
15851605 TAAGATCAGA
* * * * *
15851615 CCGGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTT
1 CCGGACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGCCTT
* * * * **
15851680 GCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGCCTTA-GACAT
66 GCGCATTATGCCTCTCCGGCCGGCTCAGCGACCGCACGCCCGTTTCATGGGTTAACTTATG-CAT
15851744 AAGGAGTTCATTCCATGTCTAAGCCCCAG
130 AAGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * *
15851773 CCGGACCAAGGGTTGTGGCAGCGGGACCGACAGTACGTAGAGGGGGACCAGGCCGATCCCCGCCT
1 CCGGACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAG-GGGGGACCAGGCCGATCCCCGCCT
* * * ** *
15851838 TGCGCATTATGCCTCTTCGGTCGGCTCAG-TACCGCACGCTTGTTTCGTGGGTTAACTTATGCAT
65 TGCGCATTATGCCTCTCCGGCCGGCTCAGCGACCGCACGCCCGTTTCATGGGTTAACTTATGCAT
* ** *
15851902 AAGGAGTTCATTCCA-GTGTAAG-ATCGG
130 AAGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * * * * * * * * * *
15851929 ATCAGATCAAGGGTTGTGGCAGCAAGATC-AGCAGCACACA-GGGGGATCGGGCCTATCTCTGAC
1 -CCGGACCAAGGGTTGCGACAGCAGGACCGA-CAGCACGCAGGGGGGACCAGGCCGATCCCCGCC
* * * * * * ** *
15851992 TTACGCATTTTGCCTCTCCGGCCGGCTGAGC-ACCTGCACGCTCGTTACGTGGGTTGGCTTAGGC
64 TTGCGCATTATGCCTCTCCGGCCGGCTCAGCGACC-GCACGCCCGTTTCATGGGTTAACTTATGC
* *
15852056 ATACGGAGTTCATTCAATGTCTAAGC
128 ATAAGGAGTTCATTCCATGTCTAAGC
15852082 ATATGGAGTT
Statistics
Matches: 247, Mismatches: 54, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
155 45 0.18
156 42 0.17
157 40 0.16
158 73 0.30
159 47 0.19
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
CCGGACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGACCAGGCCGATCCCCGCCTT
GCGCATTATGCCTCTCCGGCCGGCTCAGCGACCGCACGCCCGTTTCATGGGTTAACTTATGCATA
AGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:15852805 original size:26 final size:26
Alignment explanation
Indices: 15852776--15852828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15852766 GTTGACTTAG
* *
15852776 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
*
15852802 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
15852828 G
1 G
15852829 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:15861469 original size:26 final size:26
Alignment explanation
Indices: 15861432--15861484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15861422 GTTGACTTAG
*
15861432 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15861458 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15861484 G
1 G
15861485 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.