Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 129 of 402
Found at i:15861841 original size:159 final size:157
Alignment explanation
Indices: 15861458--15862129 Score: 559
Period size: 159 Copynumber: 4.2 Consensus size: 157
15861448 CCCAGTCTAA
* * *
15861458 GCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGCAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGCAG
* * * * * *
15861523 CACGTA-AGGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGCGCC
66 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGCTC-AGCGCC
* *
15861587 CGCATGCCCGTTTCGTGGGTTGACTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * * *
15861615 GGATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAG-ACAGAAGGTTGTGGTAGCGGGACCG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGAAC-GAGGGTTGCGGCAGCAGGATC-
* * * * *
15861677 GCAGCACACAGAGGGAGACCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCTGCTCAA
62 GCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-GCTCAG
* * **
15861742 CGGCCGCACGCTCATTTCGTACGTTGACTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * *
15861774 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAACGAGGGTTACGGCAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCG-CA
* * * * * *
15861839 GCACGCAG-GGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGATCGATTGAGCG
65 GCACGCAGAGG-GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG-CTCAGCG
* *
15861903 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15861933 GCATACGAAGTTCATTCCCAGTCTAAG-TCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCAGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCAGAACGAGGGTT------GC--G----GC
* * * * * *
15861997 AGCAGGATCGATAGCACACAG-GGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCG
53 AGCAGGATCG-CAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * *
15862061 ACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
117 ATCG-CTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
15862103 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
15862130 CCCCAGTCGG
Statistics
Matches: 409, Mismatches: 80, Indels: 39
0.77 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 40 0.10
158 19 0.05
159 217 0.53
160 8 0.02
165 1 0.00
167 1 0.00
169 3 0.01
170 95 0.23
171 22 0.05
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGCAG
CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGCTCAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15862148 original size:170 final size:169
Alignment explanation
Indices: 15861824--15865939 Score: 753
Period size: 159 Copynumber: 23.9 Consensus size: 169
15861814 GAGGGTTACG
* * * * * *
15861824 GCAGCAGGATTGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTT
1 GCAGCAGGATCGACAGCACGCAGGG-GGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTC
* * * * *
15861889 CGATCGATTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
* ** *
15861953 GTCTAAG-TCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCA
129 GTCTAAGCCCCAG-CCAGACCGAGGGTTGCGAAAGCAGGA-CA
* * *
15861995 GCAGCAGGATCGATAGCACACAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCC
15862060 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
15862125 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGACCGGCAATGAGATCG
131 CTAAGCCCCAGCCAGACCGAGGG-T-T-GC-G-A--A--AGC-A-G-GA-CA
* * * ** *
15862177 GTAGCAGGATCGGCAGCACGCAGAGGGGGATCGGG-CTGATCCTCGGTTTGTGCATTATGCCTCT
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTC-GATCCTCGACTTGCGC---AT---TCT
* * * * * *
15862241 CCAACCGGCCTCTCCGATCGGCTGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTAGGCAGACG
58 ---A----CCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * ** * ** * ** * *
15862306 AAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGG
116 GAGTTCAT-TCCATGTCTAAGC---CCCAG-CCAGACCGAGGGT-TG--C-GA--AAG-C-A-GG
**
15862370 TTGA
167 -ACA
* ** * * * * * *
15862374 GGTAGCAGGATCGGTAGCATGCA-GGGGGACCGAGTCGATCCTCGGCTTGTGTATTCTGCCTCTC
1 -GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTC
* * ** * * * * * *
15862438 TGGCCTG-CTGAATGCCCTGCATGCCCATTTTATGGGTTGGCTTAGTCATAGGGAGTTCATTCCA
65 CGACC-GACTGAGCGCCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * *
15862502 TGTCTACGCCCCAGCCGGACCGAGGGTT------G-TGG-TA
128 TGTCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
** * *
15862536 GC-G--GGATCGACATG-ATACAGGGGGGACTGGGTCGATCCTCGACTTTCGCATT-TAACCTCT
1 GCAGCAGGATCGACA-GCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCT-ACCTCT
*** * * * * *
15862596 CCGGTTGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
64 CCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
**
15862661 GTCTAAGCCCCAGCCAGACCGAGGGTT-------TTGG-CA
129 GTCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
** * * * * * ** * * *
15862694 GC-G--GGATCGGTAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCATATTATGCCTATC
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTC
* *** * * * ** * *
15862756 TGGTTGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CTTA
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-
** * * *
15862820 GTCTAAGATCAAACCGGACCGAGGGTT-C-----C--G---
129 GTCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
* * * * * * *
15862850 GCAGTAGGATCGACAGCACGCAAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCC
* * * * *
15862915 GACCGGCTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTCAGGCATACAGAGTTCATTCCATGT
66 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
** * ** * * * *
15862980 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG-GACCGGACCGAGGGTTAC-
131 CTAAGC---CCCAG-CCA-GACC-G---AGGGTTGCGA---AAGC-A-GG--ACA
* * * ** * **
15863033 GACAGCAGGA-CTAGCAGCAGGACTGGTAGCACGCAGGGGGGGA-CCGGGTCGATCCCCAGCTTG
1 G-CAGCAGGATCGA-CAGCACG-CAGGGGGGAC-C--GGGTCGATCC---TCGA-------CTTG
* * * * * * ** * *
15863096 TGCATTCTGCCTTTCTGACCCACTGAGCACTTGCACGCTTGTTTTATGGGTTGGCTTAGGCATAC
50 CGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * * * ** * *
15863161 AGAGTTCATTCCATGTCTAATCCCCAACCAGACTGAAGGTTGTGGCAGTAGGATCG
115 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGA-CA
* * * * * * * * *
15863217 GCAGCAGGATTGGCAGCATGTAGAGGGGGACCGGG-CTGATCCCCGACTTACGTATTATTCCTCT
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTC-GATCCTCGACTTGCGCATTCTACCTCT
* * * * * * *
15863281 CCGGCTGGCTGAGCGCCTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
64 CCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCA
** * ** * ** * * * *
15863346 -GTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTGCG
128 TGTCTAAGC---CCCAG-CCAGACCGAGGGT-TG--CGAA--AG--C-A-GG--ACA
* * * * * * * *
15863402 GCAGCAGGATCG-CAGCACGTAAGGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCC
* * * * * * *
15863466 GACCG-GTCGAGCGCCCGCATGCCCGTTTCGTGGGTTGACTTAGGGATAAGGAGTTCATTCCATG
66 GACCGACT-GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * ** *
15863530 TCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGGGAC-
130 TCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
* * * * *
15863569 -CGGCA-G--C-ACA-CA-G-A-GGGAGACCGGGTCGATCC-CCAGCTTGCGCATTATGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGA-CTTGCGCATTCTACCTCTC
* * * * * * ** *
15863624 CGATCTG-CTCAACGGCCGCACGCTCATTTCGTACGTTGACTTAGGCATACGGAGTTCATTCCCA
65 CGA-CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
** ** *
15863688 -GTCTAAG-ATCAGACTGGAACGAGGGTT-----A-C--G---
128 TGTCTAAGCCCCAG-CCAGACCGAGGGTTGCGAAAGCAGGACA
* * * * * *
15863718 GCAGCAGGATTGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTT
1 GCAGCAGGATCGACAGCACGCAGGG-GGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTC
* * * * *
15863783 CGATCGATTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
* ** *
15863847 GTCTAAG-TCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCA
129 GTCTAAGCCCCAG-CCAGACCGAGGGTTGCGAAAGCAGGA-CA
* * *
15863889 GCAGCAGGATCGATAGCACACAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCC
15863954 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
15864019 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCGGCAATGAGATCG
131 CTAAGCCCCAGCCAGACCGAGGG-T-T-GC-G-A--A--AGC-A-G-GA-CA
* * * ** *
15864071 GTAGCAGGATCGGCAGCACGCAGAGGGGGATCGGG-CTGATCCTCGGTTTGTGCATTATGCCTCT
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTC-GATCCTCGACTTGCGC---AT---TCT
* * * * * * *
15864135 CCAACCGGCCTCTCCGGCCGGCTGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTAGGCAGATG
58 ---A----CCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * ** * ** * ** * *
15864200 AAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGG
116 GAGTTCAT-TCCATGTCTAAGC---CCCAG-CCAGACCGAGGGT-TG--C-GA--AAG-C-A-GG
**
15864264 TTGA
167 -ACA
* ** * * * * * *
15864268 GGTAGCAGGATCGGTAGCATGCA-GGGGGACCGAGTCGATCCTCGGCTTGTGTATTCTGCCTCTC
1 -GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTC
* * ** * * * * * *
15864332 TGGCCTG-CTGAATGCCCTGCATGCCCATTTTATGGGTTGGCTTAGTCATAGGGAGTTCATTCCA
65 CGACC-GACTGAGCGCCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * *
15864396 TGTCTACGCCCCAGCCGGACCGAGGGTT------G-TGG-TA
128 TGTCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
** * *
15864430 GC-G--GGATCGACATG-ATACAGGGGGGACTGGGTCGATCCTCGACTTTCGCATT-TAACCTCT
1 GCAGCAGGATCGACA-GCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCT-ACCTCT
*** * * * * *
15864490 CCGGTTGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
64 CCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * **
15864555 GTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGAC-
129 GTCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
* * * * * * * * *
15864595 -CGGCA-G--C-AC-GTA-G-AGGGGGGACCGGGCCAATCC-CTAGCTTGTGCATTATGCCTCTT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGA-CTTGCGCATTCTACCTCTC
** * * * **
15864651 CGACCGGTTCAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCA-
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
**** * * *
15864715 GTCTAAG-ATTGGATCAGACAGAGGGTT-----A-CA--A-T
129 GTCTAAGCCCCAG-CCAGACCGAGGGTTGCGAAAGCAGGACA
* * * * * * *
15864747 TC--CAGGATCGACAACATGTAGGGGGGACCAGGTCGATCAC-CGACTTGTGCATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATC-CTCGACTTGCGCATTCTACCTCTC
* ** * * * ** **
15864809 CGACTGGTTGAGCACCTGCACACTCGTTTTGTAAGTTGGCTTAGGCATACGGAGTTCATTCCATG
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
** * ** * * * *
15864874 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG-GACCGGACCGAGGGTTAC-
130 TCTAAGC---CCCAG-CCA-GACC-G---AGGGTTGCGA---AAGC-A-GG--ACA
* * * ** * **
15864928 GACAGCAGGA-CTAGCAGCAGGACTGGTAGCACGCAGGGGGGGA-CCGGGTCGATCCCCAGCTTG
1 G-CAGCAGGATCGA-CAGCACG-CAGGGGGGAC-C--GGGTCGATCC---TCGA-------CTTG
* * * * * * ** * *
15864991 TGCATTCTGCCTTTCTGACCCACTGAGCACTTGCACGCTTGTTTTATGGGTTGGCTTAGGCATAC
50 CGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * * * ** * *
15865056 AGAGTTCATTCCATGTCTAATCCCCAACCAGACTGAAGGTTGTGGCAGTAGGATCG
115 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGA-CA
* * * * * * * * ** * *
15865112 GCAACAGGATTGGCAGCATGTAGAGGGGGACCGGG-CTGATCCCCGGCTTACATATTATTCCTCT
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTC-GATCCTCGACTTGCGCATTCTACCTCT
* * * * *
15865176 CCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
64 CCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCA
** * ** * ** * * * *
15865241 -GTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTGCG
128 TGTCTAAGC---CCCAG-CCAGACCGAGGGT-TG--CGAA--AG--C-A-GG--ACA
* * * * * * * *
15865297 GCAGCAGGATCG-CAGCACGTAAGGGGGACTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCC
* * * * * * *
15865361 GACCG-GTCGAGCGCCCGCATGCCCGTTTCGTGGGTTGACTTAGGGATAAGGAGTTCATTCCATG
66 GACCGACT-GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * ** *
15865425 TCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGGGAC-
130 TCTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
* * * * *
15865464 -CGGCA-G--C-ACA-CA-G-A-GGGAGACCGGGTCGATCC-CCAGCTTGCGCATTATGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGA-CTTGCGCATTCTACCTCTC
* * * * * * ** *
15865519 CGATCTG-CTCAACGGCCGCACGCTCATTTCGTACGTTGACTTAGGCATACGGAGTTCATTCCCA
65 CGA-CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
** ** *
15865583 -GTCTAAG-ATCAGACTGGAACGAGGGTT-----A-C--G---
128 TGTCTAAGCCCCAG-CCAGACCGAGGGTTGCGAAAGCAGGACA
* * * * * *
15865613 GCAGCAGGATTGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTT
1 GCAGCAGGATCGACAGCACGCAGGG-GGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTC
* * * * *
15865678 CGATCGATTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-
65 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
* ** *
15865742 GTCTAAG-TCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCA
129 GTCTAAGCCCCAG-CCAGACCGAGGGTTGCGAAAGCAGGA-CA
* * *
15865784 GCAGCAGGATCGATAGCACACAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCC
15865849 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
**
15865914 CTAAGCCCCAGCTGGACCGAGGGTTG
131 CTAAGCCCCAGCCAGACCGAGGGTTG
15865940 TGGCAGTAGG
Statistics
Matches: 2870, Mismatches: 747, Indels: 657
0.67 0.17 0.15
Matches are distributed among these distances:
150 8 0.00
151 6 0.00
152 2 0.00
153 3 0.00
154 11 0.00
155 7 0.00
156 5 0.00
157 8 0.00
158 369 0.13
159 592 0.21
160 114 0.04
161 10 0.00
162 12 0.00
163 11 0.00
164 11 0.00
165 7 0.00
166 9 0.00
167 10 0.00
168 4 0.00
169 9 0.00
170 319 0.11
171 207 0.07
172 10 0.00
173 4 0.00
174 11 0.00
175 14 0.00
176 3 0.00
177 2 0.00
178 7 0.00
179 15 0.01
180 34 0.01
181 13 0.00
182 61 0.02
183 306 0.11
184 129 0.04
185 37 0.01
186 9 0.00
187 3 0.00
188 19 0.01
189 8 0.00
190 12 0.00
191 2 0.00
192 4 0.00
193 8 0.00
194 4 0.00
196 175 0.06
197 170 0.06
198 48 0.02
199 12 0.00
200 16 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (169 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACCTCTCC
GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCAGACCGAGGGTTGCGAAAGCAGGACA
Found at i:15862810 original size:159 final size:158
Alignment explanation
Indices: 15862325--15862985 Score: 539
Period size: 158 Copynumber: 4.2 Consensus size: 158
15862315 CCCAATCTAA
** * * * * *
15862325 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGGCCGAGGGTTGAGGTAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * ** * * **
15862388 TAGCATGC-AGGGGGACCGAGTCGATCCTCGGCTTGTGTATTCTGCCTCTCTGGCCT-GCTGAAT
64 CAGCATGCAAGGGGGACCGAGCCAATCCTCGACTTGCATATTATGCCTCTCCGG-CTGGCTGAGC
*
15862451 GCCCTGCATGCCCATTTTATGGGTTGGCTTAG
128 GCCC-GCACGCCCATTTTATGGGTTGGCTTAG
* * * * * *
15862483 TCATAGGGAGTTCATTCCATGTCTACGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
15862548 TG-ATACAGGGGGGACTGGGTCGATCCTCGACTTTCGCAT-TTA-ACCTCTCCGGTTGGCTGAGC
66 -GCATGCAAGGGGGACCGAGCCAATCCTCGAC-TT-GCATATTATGCCTCTCCGGCTGGCTGAGC
* * **
15862610 GCCCGCACACCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCCCATTTTATGGGTTGGCTTAG
* * * **
15862641 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTTTGGCAGCGGGATCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
15862706 GCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCATATTATGCCTATCTGGTTGGCTCAGCGC
66 GCATGCA-AGGGGGACCGAGCCAATCCTCGACTTGCATATTATGCCTCTCCGGCTGGCTGAGCGC
* * *
15862771 CCGCACGCTCATTTTGTGGGTTGACTTAG
130 CCGCACGCCCATTTTATGGGTTGGCTTAG
* ** * * * ** *
15862800 GCATACGGAGTTCATT-CTTAGTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * *
15862864 AGCACGCAAGGGGGACC-AGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCATGCAAGGGGGACCGA-GCCAATCCTCGACTTGCATATTATGCCTCTCCGGCTGGCTGAGCG
* * * *
15862928 CCCGTACGCTCGTTTTATGGGTTGGCTCAG
129 CCCGCACGCCCATTTTATGGGTTGGCTTAG
*
15862958 GCATACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15862986 ATACGGAGTT
Statistics
Matches: 403, Mismatches: 86, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
157 9 0.02
158 231 0.57
159 157 0.39
160 4 0.01
161 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCATGCAAGGGGGACCGAGCCAATCCTCGACTTGCATATTATGCCTCTCCGGCTGGCTGAGCGCC
CGCACGCCCATTTTATGGGTTGGCTTAG
Found at i:15862994 original size:26 final size:26
Alignment explanation
Indices: 15862958--15863010 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15862948 GTTGGCTCAG
15862958 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15862984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15863010 G
1 G
15863011 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15863356 original size:26 final size:26
Alignment explanation
Indices: 15863326--15863378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15863316 GTTGACTTAG
*
15863326 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15863352 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15863378 G
1 G
15863379 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15863620 original size:868 final size:865
Alignment explanation
Indices: 15862602--15864722 Score: 2226
Period size: 868 Copynumber: 2.4 Consensus size: 865
15862592 CTCTCCGGTT
**
15862602 GGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * * * *
15862667 GCCCCAGCCAGACCGAGGGTTTTGGCAGCGGGATCGGTAGCATGCAGAGGGGGACCGAGCCAATC
66 GCCCCAGCCAGACCGAGGGTTGTGGTAGCGGGATCGGCAGCATACAGAGGGGGACCGGGTCGATC
** * * *
15862732 CCCGACTTGCATATTATGCCTATCTGGTTGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACT
131 CCCGACTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACT
* * *
15862797 TAGGCATACGGAGTTCATTCTTAGTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGTAGGATCG
196 TAGGCATACGGAGTTCATTC-CAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAGGATCG
* * *
15862862 ACAGCACGCAAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
260 ACAGCACGCAAGGGGGACCGGGCCAATCC-CGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGC
* *
15862927 GCCCGTACGCTCGTTTTATGGGTTGGCTCAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
324 GCCCGCACGCTCGTTTCATGGGTTGGCT-AGGCATACAGAGTTCATTCCA-GTCTAAG---A---
* * *
15862992 AGTTCATTCCCAGTCTAAGAT-TGGACCGGACCGAGGGTTACGACAGCAGGACTAGCAGCAGGA-
381 AGTTCATTCCCAGTCTAAG-TCTGGACCAGACCGAGGGTTACGAAAGCAGGACCAGCAGCAGGAT
* * * * *
15863055 CTGGTAGCACGCAGGGGGGGACCGGGTCGATCCCC-AGCTTGTGCATTCTGCCTTTCTGACCCAC
445 C-GATAGCACACA-GGGGGGACCGGGTCGATCCCCGA-CTTGTGCATTCTACCTCTCCGACCCAC
** * * *
15863119 TGAGCACTTGCACGCTTGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAATCC
507 TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
* * * *
15863184 CCAACCAGACTGAAGGTTGTGGCAGTAGGAT-C-G-G-C-AGCAGGATTGGCAGCATGTAGAGGG
572 CCAACCAGACCGAAGGTTGTGGCAGTAGGATGCAGAGACGAGCAGGATCGGCAGCACGCAGAGGG
* * * *
15863244 GGACCGGGCTGATCCCCGACTTACGTATTA-T-T-CCTCTCCGGCTGGCTGAGCGCCTGCACACT
637 GGACCGGGCTGATCCCCGACTTACGCATTACTCTCCCTCTCCGGCCGGCTGAGCCCCCGCACACT
* * * *
15863306 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCT
702 CGTTTCATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCC
* * *
15863371 AGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATC-GCAGCACGTAAGGGGGACTGGG
767 AGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGGCAGCACG-AAGGGGGACCGAG
15863435 CCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
831 CCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * *
15863470 GG-TCGAGCGCCCGCATGCCCGTTTCGTGGGTTGACTTAGGGATAAGGAGTTCATTCCATGTCTA
1 GGCT-GAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * *
15863534 AGCCCCAGCCAGACAGAAGGTTGTGGTAGCGGGACCGGCAGCACACAGAGGGAGACCGGGTCGAT
65 AGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGGATCGGCAGCATACAGAGGGGGACCGGGTCGAT
* * * **
15863599 CCCC-AGCTTGCGCATTATGCCTCTCCGATCT-GCTCAACGGCCGCACGCTCATTTCGTACGTTG
130 CCCCGA-CTTGCGCATTATGCCTCTCCGGT-TGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTG
* * *
15863662 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAACGAGGGTTACGGCAGCAGGA
193 ACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAGGA
* * * * * * * * *
15863727 TTGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTTCGATCGATT
257 TCGACAGCACGCAAGG-GGGACCGGGCCAAT-CCCGGCTTGCGCATTCTGCCTCTTCGACCGGTT
* *
15863792 GAGCGCCCGCACACTCGTTTCGTGGGTTGGCT-----T--AG-G--CA-T--A--C---GAAGTT
320 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTAGGCATACAGAGTTCATTCCAGTCTAAGAAGTT
* *
15863839 CATTCCCAGTCTAAGTCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCAGCAGCAGGATCGATA
385 CATTCCCAGTCTAAGTCTGGACCAGACCGAGGGTTACGAAAGCAGGACCAGCAGCAGGATCGATA
* * *
15863904 GCACACAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGACCGACTGAGCGCC
450 GCACACAGGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTACCTCTCCGACCCACTGAGCACC
* ** *
15863969 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
515 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAG
*
15864034 ACCGAGGGTTGTGGCAGTAGGATCGGCAATGAGATCGGTAGCAGGATCGGCAGCACGCAGAGGGG
580 ACCGAAGGTTGTGGCAGTAGGAT--GC-A-GAGA-C-G-AGCAGGATCGGCAGCACGCAGAGGGG
* * ** **
15864099 GATCGGGCTGATCCTCGGTTTGTGCATTATGCCTCTCCAACCGGCCTCTCCGGCCGGCTGAGCCC
638 GACCGGGCTGATCCCCGACTTACGCATTA---CTCT-----C--CCTCTCCGGCCGGCTGAGCCC
* * * *
15864164 CCGTACGCTCGTTTCATGGGTTGACTTAGGCAGATGAAGTTCATCCCCAATCTAAGCATACGGAG
693 CCGCACACTCGTTTCATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATCTAAGCATACGAAG
** * * * * *
15864229 TTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGAGGTAGCAGGATCGGTAGCATGCAGGG
758 TTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGGCAGCACGAAGGG
* * * * * * *
15864294 GGACCGAGTCGATCCTCGGCTTGTGTATTCTGCCTCTCTGGCC
823 GGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* ** * ** *
15864337 TGCTGAATGCCCTGCATGCCCATTTTATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTA
1 GGCTGAGCGCCC-GCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
15864402 CGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGATCGACATG-ATACAG-GGGGGACTGGGTCGA
65 AGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGGATCGGCA-GCATACAGAGGGGGACCGGGTCGA
* * * * * * *
15864465 TCCTCGACTTTCGCATT-TAACCTCTCCGGTTGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTG
129 TCCCCGACTTGCGCATTAT-GCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTG
* * ** * * * * **
15864529 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGA
193 ACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAGGA
* * * * * *
15864594 CCGGCAGCACGTAGAGGGGGGACCGGGCCAATCCCTAGCTTGTGCATTATGCCTCTTCGACCGGT
257 TCGACAGCACGCA-A-GGGGGACCGGGCCAATCCC-GGCTTGCGCATTCTGCCTCTTCGACCGGT
* * * *
15864659 TCAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGA
319 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGC-TAGGCATACAGAGTTCATT-CCAGTCTAAGA
15864723 TTGGATCAGA
Statistics
Matches: 1012, Mismatches: 176, Indels: 110
0.78 0.14 0.08
Matches are distributed among these distances:
842 128 0.13
843 66 0.07
844 1 0.00
845 1 0.00
846 1 0.00
848 1 0.00
849 2 0.00
851 1 0.00
852 1 0.00
854 45 0.04
855 1 0.00
857 1 0.00
858 3 0.00
859 1 0.00
860 1 0.00
861 2 0.00
863 1 0.00
866 5 0.00
867 287 0.28
868 382 0.38
869 69 0.07
870 2 0.00
874 1 0.00
876 1 0.00
877 1 0.00
879 2 0.00
880 1 0.00
883 1 0.00
885 1 0.00
888 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (865 bp):
GGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTGTGGTAGCGGGATCGGCAGCATACAGAGGGGGACCGGGTCGATC
CCCGACTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAGGATCGA
CAGCACGCAAGGGGGACCGGGCCAATCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTAGGCATACAGAGTTCATTCCAGTCTAAGAAGTTCATTCC
CAGTCTAAGTCTGGACCAGACCGAGGGTTACGAAAGCAGGACCAGCAGCAGGATCGATAGCACAC
AGGGGGGACCGGGTCGATCCCCGACTTGTGCATTCTACCTCTCCGACCCACTGAGCACCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAA
GGTTGTGGCAGTAGGATGCAGAGACGAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATC
CCCGACTTACGCATTACTCTCCCTCTCCGGCCGGCTGAGCCCCCGCACACTCGTTTCATGGGTTG
ACTTAGGCAGACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAA
CCAGACCGAGGGTTGAGGCAGCAGGATCGGCAGCACGAAGGGGGACCGAGCCAATCCCCGGCTTG
CGCATTCTGCCTCTCCGACC
Found at i:15864464 original size:867 final size:839
Alignment explanation
Indices: 15862984--15864880 Score: 1984
Period size: 867 Copynumber: 2.2 Consensus size: 839
15862974 CCATGTCTAA
* * * *
15862984 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAGGACTAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGA-CGAGGGTTACGAAAGCAGGACCAGCA
* * * *
15863049 GCAGGACTGGTAGCACGCAGGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTTTCTGA
65 GCAGGAC-GATAGCAC-CA-GGGGGGACCGGGTCGATCCCGA-CTTGTGCATTCTGCCTCTCCGA
* * * *
15863114 CCCACTGAGCACTTGCACGCTTGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
126 CCGACTGAGCACCTGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * *
15863179 AATCCCCAACCAGACTGAAGGTTGTGGCAGTAGGATCGGCAGCAGGATTGGCAGCATGTAGAGGG
191 AAGCCCCAACCAGACCGAAGGTTGTGGCAGTAGGATCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * *
15863244 GGACCGGGCTGATCCCCGACTTACGTATTATTCCTCTCCGGCTGGCTGAGCGCCTGCACACTCGT
256 GGACCGGGCTGATCCCCGACTTACGCATTATTCCTCTCCGGCCGGCTGAGCCCCCGCACACTCGT
* * * *
15863309 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGT
321 TTCATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGT
* * *
15863374 CTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGCAGCACGTAAGGGGGACTGGGCCAA
386 CTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGCAGCACGTAAGGGGGACCGAGCCAA
* * * *
15863439 TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGCGCCCGCATGCCCGTTTCGTGGGTTGA
451 TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTCGAACGCCCGCATGCCCATTTCATGGGTTGA
*
15863504 CTTAGGGATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGGGAC
516 CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGGGAC
* *
15863569 CGGCAGCACACAGAGGGAGACCGGGTCGATCCCC-AGCTTGCGCA-TTATGCCTCTCCGATCT-G
581 CGACAGCACACAGAGGGAGACCGGGTCGATCCCCGA-CTTGCGCATTTA-ACCTCTCCGAT-TGG
* * *
15863631 CTCAACGGCCGCACGCTCATTTCGTACGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
643 CTCAACGCCCGCACACCCATTTCGTACGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* ** * ** * * *
15863695 -ATCAGACTGGAACGAGGGTTACGGCAGCAGGATTGACAGCACGCAG-GGAGGGATCGGGTCGAT
707 CACCAG-CCAGAACAAGGGTTACGGCAGCAGGACCGACAGCACGCAGAGGAGGGACCGGGCCAAT
* * * * * *
15863758 CCCCGGCTTACGCATTCTACCTCTTCGATCGATTGAGCGCCCGCACACTCGTTTCGTGGGTTGGC
771 CCCCAGCTTACGCATTATACCTCTTCGACCGATTCAGCGCCCGCACACTCGTTTCATGGGTTGAC
15863823 TTAG
836 TTAG
*
15863827 GCATACGAAGTTCATTCCCAGTCTAAG-TCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCAGC
1 GCATACGAAGTTCATTCCCAGTCTAAGAT-TGGACCAGA-CGAGGGTTACGAAAGCAGGACCAGC
*
15863891 AGCAGGATCGATAGCACACAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGA
64 AGCAGGA-CGATAGCAC-CAGGGGGGACCGGGTCGATCC-CGACTTGTGCATTCTGCCTCTCCGA
* * *
15863956 CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
126 CCGACTGAGCACCTGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
** * *
15864021 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCGGCAATGAGATCGGTAGCAGGATCGGCA
191 AAGCCCCAACCAGACCGAAGGTTGTGGCAGTAGGAT---C---G-G--C---AGCAGGATCGGCA
* * ** **
15864086 GCACGCAGAGGGGGATCGGGCTGATCCTCGGTTTGTGCATTATGCCTCTCCAACCGGCCTCTCCG
244 GCACGCAGAGGGGGACCGGGCTGATCCCCGACTTACGCATTA----T-T--------CCTCTCCG
* * *
15864151 GCCGGCTGAGCCCCCGTACGCTCGTTTCATGGGTTGACTTAGGCAGATGAAGTTCATCCCCAATC
296 GCCGGCTGAGCCCCCGCACACTCGTTTCATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATC
* ** * *
15864216 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGAGGTAGCAGGATCG
361 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATC-
* * * * * * * * * *
15864281 GTAGCATG-CAGGGGGACCGAGTCGATCCTCGGCTTGTGTATTCTGCCTCTCTGGCCTGCT-GAA
425 GCAGCACGTAAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCTCGAA
* * * * * *
15864344 TGCCCTGCATGCCCATTTTATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTACGCCCCA
489 CGCCC-GCATGCCCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * * *
15864409 GCCGGACCGAGGGTTGTGGTAGCGGGATCGACATG-ATACAG-GGGGGACTGGGTCGATCCTCGA
553 GCCAGACAGAAGGTTGTGGTAGCGGGACCGACA-GCACACAGAGGGAGACCGGGTCGATCCCCGA
* * * * * ** *
15864472 CTTTCGCATTTAACCTCTCCGGTTGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGC
617 CTTGCGCATTTAACCTCTCCGATTGGCTCAACGCCCGCACACCCATTTCGTACGTTGACTTAGGC
* * * ** *
15864537 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACCGGCAGC
682 ATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGAACAAGGGTTACGGCAGCAGGACCGACAGC
* * * ** * *
15864602 ACGTAGAGGGGGGACCGGGCCAATCCCTAGCTTGTGCATTATGCCTCTTCGACCGGTTCAGCGCC
747 ACGCAGAGGAGGGACCGGGCCAATCCCCAGCTTACGCATTATACCTCTTCGACCGATTCAGCGCC
* *
15864667 CGCACGCTTGTTTCATGGGTTGACTTAG
812 CGCACACTCGTTTCATGGGTTGACTTAG
* * ** *
15864695 GCATACAAAGTTCATTCCCAGTCTAAGATTGGATCAGACAGAGGGTTAC-AATTCCAGGATC-G-
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGAC-GAGGGTTACGAA-AGCAGGACCAGC
* * *
15864757 A-CA--AC-AT-G---TAGGGGGGACCAGGTCGATCACCGACTTGTGCATTCTGCCTCTCCGACT
64 AGCAGGACGATAGCACCAGGGGGGACCGGGTCGATC-CCGACTTGTGCATTCTGCCTCTCCGACC
** * * **
15864814 GGTTGAGCACCTGCACACTCGTTTTGTAAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GACTGAGCACCTGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15864879 GC
193 GC
15864881 ATACGGAGTT
Statistics
Matches: 868, Mismatches: 144, Indels: 71
0.80 0.13 0.07
Matches are distributed among these distances:
842 127 0.15
843 74 0.09
844 1 0.00
845 1 0.00
848 1 0.00
849 1 0.00
851 1 0.00
854 45 0.05
856 101 0.12
857 1 0.00
858 1 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 1 0.00
863 1 0.00
865 2 0.00
866 5 0.01
867 283 0.33
868 216 0.25
869 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (839 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACGAGGGTTACGAAAGCAGGACCAGCAG
CAGGACGATAGCACCAGGGGGGACCGGGTCGATCCCGACTTGTGCATTCTGCCTCTCCGACCGAC
TGAGCACCTGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAACCAGACCGAAGGTTGTGGCAGTAGGATCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC
GGGCTGATCCCCGACTTACGCATTATTCCTCTCCGGCCGGCTGAGCCCCCGCACACTCGTTTCAT
GGGTTGACTTAGGCAGACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAG
ATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGCAGCACGTAAGGGGGACCGAGCCAATCCCC
GGCTTGCGCATTCTGCCTCTCCGACCGCTCGAACGCCCGCATGCCCATTTCATGGGTTGACTTAG
GCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGGGACCGACA
GCACACAGAGGGAGACCGGGTCGATCCCCGACTTGCGCATTTAACCTCTCCGATTGGCTCAACGC
CCGCACACCCATTTCGTACGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCA
GAACAAGGGTTACGGCAGCAGGACCGACAGCACGCAGAGGAGGGACCGGGCCAATCCCCAGCTTA
CGCATTATACCTCTTCGACCGATTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
Found at i:15864889 original size:26 final size:26
Alignment explanation
Indices: 15864853--15864905 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15864843 GTTGGCTTAG
15864853 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15864879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15864905 G
1 G
15864906 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15865251 original size:26 final size:26
Alignment explanation
Indices: 15865221--15865273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15865211 GTTGACTTAG
*
15865221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15865247 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15865273 G
1 G
15865274 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15865956 original size:170 final size:171
Alignment explanation
Indices: 15865613--15865939 Score: 435
Period size: 170 Copynumber: 1.9 Consensus size: 171
15865603 GAGGGTTACG
* * * * *
15865613 GCAGCAGGATTGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTT
1 GCAGCAGGATCGACAGCACACAGGGAGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTC
* * *
15865678 CGATCGATTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
66 CGACCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
* ** *
15865743 TCTAAGTCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCA
131 TCTAAGCCCAGACCAGACCGAGGGTTGCGAAAGCAGGACCA
* * **
15865784 GCAGCAGGATCGATAGCACACAGGG-GGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTC
1 GCAGCAGGATCGACAGCACACAGGGAGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTC
* *
15865848 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
66 CGACCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-
**
15865912 GTCTAAGCCCCAG-CTGGACCGAGGGTTG
130 GTCTAAG-CCCAGACCAGACCGAGGGTTG
15865940 TGGCAGTAGG
Statistics
Matches: 134, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
169 3 0.02
170 107 0.80
171 24 0.18
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (171 bp):
GCAGCAGGATCGACAGCACACAGGGAGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTC
CGACCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
TCTAAGCCCAGACCAGACCGAGGGTTGCGAAAGCAGGACCA
Found at i:15866359 original size:867 final size:840
Alignment explanation
Indices: 15864879--15866774 Score: 1934
Period size: 867 Copynumber: 2.2 Consensus size: 840
15864869 CCATGTCTAA
15864879 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCGGACCGAGGGTTACGACAGCAGGACTAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGGACCGAGGGTT-CGA-AGCAGGAC-AGC
* * *
15864943 AGCAGGA-CTGGTAGCACGCAGGGGGGGACCGGGTCGATCC-CCAGCTTGTGCATTCTGCCTTTC
63 AGCAGGATC-GATAGCACGCA-GGGGGGACCGGGTCGATCCTCGA-CTTGTGCATTCTGCCTCTC
* * * ** *
15865006 TGACCCACTGAGCACTTGCACGCTTGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
125 CGACCGACTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
* * * * * *
15865071 TCTAATCCCCAACCAGACTGAAGGTTGTGGCAGTAGGATCGGCAACAGGATTGGCAGCATGTAGA
190 TCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGTAGGATCGGCAACAGGATCGCCAGCACGCAGA
* * *
15865136 GGGGGACCGGGCTGATCCCCGGCTTACATATTATTCCTCTCCGGCTGGCTGAGCGCCCGCACGCT
255 GGGGGACCGGGCTGATCCCCGGCTTACACATTATGCCTCTCCGGCTGGCTGAGCCCCCGCACGCT
* * * *
15865201 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCT
320 CGTTTCATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCC
* * *
15865266 AGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGCAGCACGTAAGGGGGACTGGGC
385 AGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGCAGCACGTAAGGGGGACCGAGC
* * * *
15865331 CAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGCGCCCGCATGCCCGTTTCGTGGGT
450 CAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTCGAACGCCCGCATGCCCATTTCATGGGT
*
15865396 TGACTTAGGGATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGG
515 TGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGG
* *
15865461 GACCGGCAGCACACAGAGGGAGACCGGGTCGATCCCC-AGCTTGCGCA-TTATGCCTCTCCGATC
580 GACCGACAGCACACAGAGGGAGACCGGGTCGATCCCCGA-CTTGCGCATTTA-ACCTCTCCGAT-
* * *
15865524 T-GCTCAACGGCCGCACGCTCATTTCGTACGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
642 TGGCTCAACGCCCGCACACCCATTTCGTACGTTGACTTAGGCATACGGAGTTCATT-CCATGTCT
* ** * * * *
15865587 AAG-ATCAGACTGGAACGAGGGTTACGGCAGCAGGATTGACAGCACGCAG-GGAGGGATCGGGTC
706 AAGCACCAG-CCAGAACGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGG-GGGACCGAGCC
* * * * * * * *
15865650 GATCCCCGGCTTACGCATTCTACCTCT-TCGATCGATTGAGCGCCCGCACACTCGTTTCGTGGGT
769 AATCCCCGACTTACACATTATACCTATCT-GATCGACTCAGCGCCCGCACACTCATTTCGTGGGT
*
15865714 TGGCTTAG
833 TGACTTAG
* * *
15865722 GCATACGAAGTTCATTCCCAGTCTAAG-TCTGGACCAGATCGAGGGTTGCGAAAGCAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGGACCGAGGGTT-CG-AAGCAGGA-CAGC
* *
15865786 AGCAGGATCGATAGCACACAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGA
63 AGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGA
* *
15865851 CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
128 CCGACTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
* ** * * *
15865916 AAGCCCCAGCTGGACCGAGGGTTGTGGCAGTAGGACCAGCAATGAGATCGGCAGCGGGATCGCCA
193 AAGCCCCAACCAGACCGAAGGTTGTGGCAGT----------A-G-GATCGGCAACAGGATCGCCA
* * * * ***
15865981 GCACGCAGAGGGGGATCGGGTTGATCCTCGGTTTGTGCATTATGCCTCTCCAACCGGCCTCTCCA
246 GCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTACACATTATGCCTCT----CCGG------C-
* *
15866046 ATCGGCTGAGCCCCCGTATGCTCGTTTCATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATC
300 -T-GGCTGAGCCCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATC
* ** * *
15866111 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGGCCGAGGGTTGAGGTAGCAGGATCG
363 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATC-
* * * * * * * * * *
15866176 GTAGCATG-CAGGGGGACCGAGTCGATCCTCGGCTTGTGTATTCTGCCTCTCTGGCCTGCT-GAA
427 GCAGCACGTAAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACC-GCTCGAA
* * * * * *
15866239 TGCCCTGCATGCCCATTTTATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTACGCCCCA
491 CGCCC-GCATGCCCATTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * * *
15866304 GCCGGACCGAGGGTTGTGGTAGCGGGATCGACATG-ATACAG-GGGGGACTGGGTCGATCCTCGA
555 GCCAGACAGAAGGTTGTGGTAGCGGGACCGACA-GCACACAGAGGGAGACCGGGTCGATCCCCGA
* * * * * ** *
15866367 CTTTCGCATTTAACCTCTCCGGTTGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGC
619 CTTGCGCATTTAACCTCTCCGATTGGCTCAACGCCCGCACACCCATTTCGTACGTTGACTTAGGC
* * * ** * **
15866432 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTTTGGCAGCGGGATCGGTAGC
684 ATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGAACGAGGGTTACGGCAGCAGGATCGACAGC
* * * * * * *
15866497 ATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCATATTATGCCTATCTGGTTGGCTCAGCGCCC
749 ACGCAGAGGGGGACCGAGCCAATCCCCGACTTACACATTATACCTATCTGATCGACTCAGCGCCC
* *
15866562 GCACGCTCATTTTGTGGGTTGACTTAG
814 GCACACTCATTTCGTGGGTTGACTTAG
** ** *
15866589 GCATACGGAGTTCATTCTTAGTCTAAGATC-AAACCGGACCGAGGGTTC----C--G---GCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGGACCGAGGGTTCGAAGCAGGACAGCAGC
* * * * * * *
15866644 AGGATCGACAGCACGCAAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCG
66 AGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCG
* * *
15866709 GCTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTCAGGCATACAGAGTTCATTCCATGTCTAAG
131 ACTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
15866774 C
196 C
15866775 ATACGGAGTT
Statistics
Matches: 861, Mismatches: 150, Indels: 72
0.80 0.14 0.07
Matches are distributed among these distances:
842 122 0.14
843 72 0.08
844 3 0.00
852 1 0.00
853 1 0.00
854 54 0.06
855 121 0.14
858 4 0.00
859 1 0.00
861 1 0.00
864 1 0.00
866 6 0.01
867 369 0.43
868 104 0.12
869 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (840 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGGACCGAGGGTTCGAAGCAGGACAGCAGC
AGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCG
ACTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
CCCCAACCAGACCGAAGGTTGTGGCAGTAGGATCGGCAACAGGATCGCCAGCACGCAGAGGGGGA
CCGGGCTGATCCCCGGCTTACACATTATGCCTCTCCGGCTGGCTGAGCCCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCAGACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTA
AGATCAAACCAGACCGAGGGTTGAGGCAGCAGGATCGCAGCACGTAAGGGGGACCGAGCCAATCC
CCGGCTTGCGCATTCTGCCTCTCCGACCGCTCGAACGCCCGCATGCCCATTTCATGGGTTGACTT
AGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGTAGCGGGACCGA
CAGCACACAGAGGGAGACCGGGTCGATCCCCGACTTGCGCATTTAACCTCTCCGATTGGCTCAAC
GCCCGCACACCCATTTCGTACGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGC
CAGAACGAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCCCGACTT
ACACATTATACCTATCTGATCGACTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAG
Found at i:15866599 original size:159 final size:158
Alignment explanation
Indices: 15866114--15866774 Score: 539
Period size: 158 Copynumber: 4.2 Consensus size: 158
15866104 CCCAATCTAA
** * * * * *
15866114 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGGCCGAGGGTTGAGGTAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * ** * * **
15866177 TAGCATGC-AGGGGGACCGAGTCGATCCTCGGCTTGTGTATTCTGCCTCTCTGGCCT-GCTGAAT
64 CAGCATGCAAGGGGGACCGAGCCAATCCTCGACTTGCATATTATGCCTCTCCGG-CTGGCTGAGC
*
15866240 GCCCTGCATGCCCATTTTATGGGTTGGCTTAG
128 GCCC-GCACGCCCATTTTATGGGTTGGCTTAG
* * * * * *
15866272 TCATAGGGAGTTCATTCCATGTCTACGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
15866337 TG-ATACAGGGGGGACTGGGTCGATCCTCGACTTTCGCAT-TTA-ACCTCTCCGGTTGGCTGAGC
66 -GCATGCAAGGGGGACCGAGCCAATCCTCGAC-TT-GCATATTATGCCTCTCCGGCTGGCTGAGC
* * **
15866399 GCCCGCACACCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCCCATTTTATGGGTTGGCTTAG
* * * **
15866430 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTTTGGCAGCGGGATCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
15866495 GCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCATATTATGCCTATCTGGTTGGCTCAGCGC
66 GCATGCA-AGGGGGACCGAGCCAATCCTCGACTTGCATATTATGCCTCTCCGGCTGGCTGAGCGC
* * *
15866560 CCGCACGCTCATTTTGTGGGTTGACTTAG
130 CCGCACGCCCATTTTATGGGTTGGCTTAG
* ** * * * ** *
15866589 GCATACGGAGTTCATT-CTTAGTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * *
15866653 AGCACGCAAGGGGGACC-AGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCATGCAAGGGGGACCGA-GCCAATCCTCGACTTGCATATTATGCCTCTCCGGCTGGCTGAGCG
* * * *
15866717 CCCGTACGCTCGTTTTATGGGTTGGCTCAG
129 CCCGCACGCCCATTTTATGGGTTGGCTTAG
*
15866747 GCATACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15866775 ATACGGAGTT
Statistics
Matches: 403, Mismatches: 86, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
157 9 0.02
158 231 0.57
159 157 0.39
160 4 0.01
161 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCATGCAAGGGGGACCGAGCCAATCCTCGACTTGCATATTATGCCTCTCCGGCTGGCTGAGCGCC
CGCACGCCCATTTTATGGGTTGGCTTAG
Found at i:15866783 original size:26 final size:26
Alignment explanation
Indices: 15866747--15866799 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15866737 GTTGGCTCAG
15866747 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15866773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15866799 G
1 G
15866800 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15867510 original size:26 final size:26
Alignment explanation
Indices: 15867480--15867532 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15867470 GTTGACTTAG
*
15867480 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15867506 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15867532 G
1 G
15867533 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15867983 original size:158 final size:156
Alignment explanation
Indices: 15867506--15868007 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 156
15867496 CCTAGTCTAA
* * * * *
15867506 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGAGTTGCGGTAGCAAGATCGACA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGCAGGATCGACA
* * * * * *
15867571 GCACG-TAGGAGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTTCGACCTGCTAAGGGC
65 GCACGCAAGG-GGGACC-GGCCAATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGC
** *
15867635 CTACACGC-CTGTTTTGTGGATTGGCTTAG
128 CCGCACGCTC-GTTTTGTGGGTTGGCTTAG
** ** * * * ** * **
15867664 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTTTGGCAGCGGGATCGGTA
1 GCATACAGAGTTCATTCCA-GTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGCAGGATCGACA
* * * * * * * *** *
15867729 GCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCATATTATGCCTATCTGGTTGGCTCAGCGC
65 GCACGCA-AGGGGGACCG-GCCAATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGC
* *
15867794 CCGCACGCTCATTTTGTGGGTTGACTTAG
128 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * *
15867823 GCATACGGAGTTCATTCTTAGTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTC-CAGTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGCAGGATCGACA
* *
15867888 GCACGCAAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 GCACGCAAGGGGGACC-GGCCAATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCC
* * *
15867953 CGTACGCTCGTTTTATGGGTTGGCTCAG
129 CGCACGCTCGTTTTGTGGGTTGGCTTAG
15867981 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
15868008 CATACGGAGT
Statistics
Matches: 266, Mismatches: 70, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 4 0.02
158 141 0.53
159 116 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAAACCGGACCGAGGGTTCCGGCAGCAGGATCGACAG
CACGCAAGGGGGACCGGCCAATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCCCG
CACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:15868017 original size:26 final size:26
Alignment explanation
Indices: 15867981--15868033 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15867971 GTTGGCTCAG
15867981 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15868007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15868033 G
1 G
15868034 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15868378 original size:26 final size:26
Alignment explanation
Indices: 15868348--15868400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15868338 GTTGACTTAG
*
15868348 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15868374 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15868400 G
1 G
15868401 ATCAGGACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15868398 original size:367 final size:343
Alignment explanation
Indices: 15867810--15868718 Score: 869
Period size: 367 Copynumber: 2.6 Consensus size: 343
15867800 GCTCATTTTG
* * ** * * * **
15867810 TGGGTT-GACTTAGGCATACGGAGTTCATT-CTTAGTCTAAGATCAAACCGGACCGAGGGTTCCG
1 TGGGTTAG-CTTAGGCATACAGAGTTCATTACAT-GTCTAAGCCCCAACCAGACCGAAGGTTGTG
* * * ** * * *
15867873 GCAGTAGGA-TCGACAGCACGCA-AGGGGGACCAGGCCAATCCTCGGCTTGCGCATTCTGCCTCT
64 GCAGTGGGACTAG-CAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGTATTATGCCTCT
* * * * * * * *
15867936 CCGACCGGCTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTCAGGCATACAGAGTTCATTCCAT
128 CCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-
* * *
15868001 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCGGACCGAGGGTTACGACAGCAGG
192 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGGACCGAACCGAGGGTTACGACAGCAGG
*
15868065 ACTAGCAGCAGGACTGGTAGCACGCAGGGGGGACCGGG-TCGATCCCCAGCTTGCGCATTCTGCC
257 A-T-----CA--A----TAGCACGCAGGGGGGACCGGGCT-GATCCCCAGCTTGCGCATTCTACC
* * * * ** *
15868129 TTTCTGACCCACTGAGCACTTGCACGCTTGTTTTA
309 TCTCCGACCCACTGAGCACCTGCACACTCCTTTCA
* * * *
15868164 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAATCCCCAACCAGACTGAAGGTTGTGGC
1 TGGGTTAGCTTAGGCATACAGAGTTCATTACATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGC
* * * *
15868229 AGTAGGATCGGCAGCAGGATTGGCAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTACGTAT
66 AGT--G---GG-A-C-----TAGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGTAT
*
15868294 TATTCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
119 TATGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
15868359 TCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGGACCGAACCGAGGGTTAC
184 TCAT-CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGGACCGAACCGAGGGTTAC
* * * * *
15868424 GGCAGCAGGATCAATAGCATGCAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTACCTCTC
248 GACAGCAGGATCAATAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTC
** ** **
15868489 CGGTCGGCTGAGTGCCTGCACACTCCTTTCA
313 CGACCCACTGAGCACCTGCACACTCCTTTCA
* ** * *
15868520 TGGGTTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
1 TGGGTTAGCTTAGGCATACAGAGTTCATTACATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGC
* * *
15868585 AGTGGGACTAGCAGCACGCAGAGGGGGACCGAG-TCGATCCCCGGCTTGCGTATTATGCCCCTCT
66 AGTGGGACTAGCAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTTGCGTATTATGCCTCTCC
* * * *
15868649 GGCTAGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCTAGT
130 GGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGT
15868714 CTAAG
194 CTAAG
15868719 ATCGGGCCGG
Statistics
Matches: 460, Mismatches: 74, Indels: 52
0.78 0.13 0.09
Matches are distributed among these distances:
343 1 0.00
344 110 0.24
345 1 0.00
349 1 0.00
350 1 0.00
351 2 0.00
354 53 0.12
355 3 0.01
356 121 0.26
357 1 0.00
359 2 0.00
360 2 0.00
362 2 0.00
366 7 0.02
367 123 0.27
368 30 0.07
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
TGGGTTAGCTTAGGCATACAGAGTTCATTACATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGC
AGTGGGACTAGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGTATTATGCCTCTCCG
GCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGGACCGAACCGAGGGTTACGACAGCAGGATCA
ATAGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCCGACCCACTGAGC
ACCTGCACACTCCTTTCA
Found at i:15868678 original size:159 final size:152
Alignment explanation
Indices: 15868448--15868873 Score: 370
Period size: 159 Copynumber: 2.7 Consensus size: 152
15868438 TAGCATGCAG
* * * * * ** * ** * *
15868448 GGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCTGCACACT
1 GGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCCCTCCGACCAGCTGAGCACCCGCACGCT
* *
15868513 CCTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGTCGGACCGAGGG
66 CGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATT-CATGTCTAAGCCCCAGCCGGACCGAGGG
* *
15868578 TTGTGGCAGTGGGACTAG-CAGCACGCAGA
129 -T-T-ACAGTAGGA-TAGACAGCACG--GA
* * * * * * *
15868607 GGGGGACCGAG-TCGATCCCCGGCTTGCGTATTATGCCCCTCTGGCTAGCTTAGCGCCCGCACGC
1 GGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCCCTCCGACCAGCTGAGCACCCGCACGC
* * ** **
15868671 TCGTTTCATGGGTTGACTTAGGCATACGGATTTCATTCCTAGTCTAAGATCGGGCCGGACCGAGG
65 TCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCATTCAT-GTCTAAGCCCCAGCCGGACCGAGG
* *
15868736 GTTACAGTAGGATTGACAGCACGTA
128 GTTACAGTAGGATAGACAGCACGGA
* * * * *
15868761 GGGGGACCGGGCTGATCCTCGGCTTTCGCATTTTGCCTCTCCGACCGGCTGAGCACCCGCACGCT
1 GGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCCCTCCGACCAGCTGAGCACCCGCACGCT
* * *
15868826 AGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATT-CATGTCTAAGC
15868874 ATACGGAGTT
Statistics
Matches: 215, Mismatches: 45, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
154 89 0.41
155 6 0.03
156 14 0.07
157 1 0.00
158 5 0.02
159 100 0.47
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.25
Consensus pattern (152 bp):
GGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCCCTCCGACCAGCTGAGCACCCGCACGCT
CGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCATGTCTAAGCCCCAGCCGGACCGAGGGTT
ACAGTAGGATAGACAGCACGGA
Found at i:15868875 original size:26 final size:26
Alignment explanation
Indices: 15868846--15868924 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
15868836 GTTGGCTTAG
15868846 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15868872 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15868898 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15868924 G
1 G
15868925 ATCAAACCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 49 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15869260 original size:26 final size:26
Alignment explanation
Indices: 15869224--15869276 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15869214 GTTGACTTAG
15869224 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15869250 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15869276 G
1 G
15869277 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15869543 original size:159 final size:156
Alignment explanation
Indices: 15869321--15869911 Score: 466
Period size: 159 Copynumber: 3.7 Consensus size: 156
15869311 GACAGCACGC
* * * * * * * *
15869321 AGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCTCCCGCACC
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACG
* * * *
15869386 CCCATTTCGTGGGGTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAG
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAG
15869451 GGTTGTGGTAAAGGGACCGGCAGCGCA
131 GGTTGTGGTAAA-GGACCGGCAGCGCA
* * *
15869478 TAGAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCGATCGGCTTAGCGCCCGCA
1 -AG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCA
* * * * ** * *
15869543 CGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCTGATCGGAC
64 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GGAC
* * * * * *
15869606 CGAGAGTTATGGCAGTAGGATCGACAGCATGCA
127 CGAGGGTTGTGGTA-AAGGACCGGCAGC--GCA
* * * ** * * * * *
15869639 AGGGTGGACCGGGTCGATCCTCGATTTTCGCATTTTGCCTCTCCGATTGGCCGAGTGCCCGCACG
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACG
* * * *
15869704 CTTGTTTCGTGGGTTGGCTTAGGAATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAG
**
15869769 GGTTGTGGCTGCAGGACCGGCAGCGAGATCGACA
131 GGTTGTGG-TAAAGGACC-G--GC-AG--CG-CA
* * * ** *
15869803 GCATGCAGAAGGGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTAAGCGC
1 --A-G--G--GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
* * * *
15869868 CCGTACGTTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
59 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
15869912 CCCCAATCTA
Statistics
Matches: 329, Mismatches: 81, Indels: 33
0.74 0.18 0.07
Matches are distributed among these distances:
158 8 0.02
159 220 0.67
160 9 0.03
161 3 0.01
162 1 0.00
163 3 0.01
164 2 0.01
165 1 0.00
166 1 0.00
167 1 0.00
169 1 0.00
171 79 0.24
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (156 bp):
AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAG
GGTTGTGGTAAAGGACCGGCAGCGCA
Found at i:15869583 original size:875 final size:885
Alignment explanation
Indices: 15867981--15869753 Score: 2288
Period size: 875 Copynumber: 2.0 Consensus size: 885
15867971 GTTGGCTCAG
*** *
15867981 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAC
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
* * * *
15868046 CGAGGGTTACGACAGCAGGACTAGCAGCAGGACTGGTAGCACGCAGGGGGGACCGGGTCGATCCC
66 CGAGGGTTACGACAGCAGGACCAGCAGCAGGACTGGCAGCACGCAAGGGGGACCGGGCCGATCCC
* ** *
15868111 CAGCTTGCGCATTCTGCCTTTCTGACCCACTGAGCACTTGCACGCTTGTTTTATGGGTTGGCTTA
131 CAGCTTGCGCATTCTGCCTTTCAGACCCACTGAGCACCCGCACGCTCGTTTTATGGGTTGGCTTA
* * * *
15868176 GGCATACAGAGTTCATTCCATGTCTAATCCCCAACCAGACTGAAGGTTGTGGCAGTAGGATCGGC
196 AGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCAGGATCGGC
* * * *
15868241 AGCAGGATTGGCAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTACGTATTATTCCTCTCCG
261 AGCAGGATTGGCA-CA-GCACAGCGGG--CGGGC-GA---CC-GCTTACGTATTATGCCTCTCCG
* * *
15868306 GCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
317 ACCGGCTGAGCGCCCGCACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* **
15868371 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGGACCGAACCGAGGGTTACGGCAGCAGGATC
382 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAACCGAACCGAGGGTTACAACAGCAGGATC
* * * * * ** *
15868436 AATAGCATGCAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAG
447 AACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAG
* * *
15868501 TGCCTGCACACTCCTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAG
512 TGCCCGCACACCCCTTTCATGGGGTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAG
** * * *
15868566 TCGGACCGAGGGTTGTGGCAGTGGGACTAGCAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCT
577 TCGGACCGAGGGTTGTGGCAAAGGGACCAGCAGCACACAGAGGGGGACCGAGCCGATCCCCGGCT
* *
15868631 TGCGTATTATGCCCCTCTGGCTAGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
642 TGCGTATTATGCCCCTCTCGATAGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* * * * * *
15868696 ACGGATTTCATTCCTAGTCTAAGATCGGGCCGGACCGAGGGTTA-CAGTAGGATTGACAGCACG-
707 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTAGCAGTAGGATCGACAGCACGC
* * *
15868759 TAGGG-GGACCGGG-CTGATCCTCGGCTTTCGCATTTTGCCTCTCCGACCGGCTGAGCACCCGCA
772 AAGGGTGGACCGGGTC-GATCCTCGACTTTCGCATTTTGCCTCTCCGACCGGCCGAGCACCCGCA
*
15868822 CGCTAGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
836 CGCTAGTTTCGTGAGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAA
*
15868872 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
* * * * *
15868937 TGAGGGTTGCGATAGCAGGACCAGCAGCAGGA-TCGGCAGCACGTAAGGGGGACCGGGCCGATTC
66 CGAGGGTTACGACAGCAGGACCAGCAGCAGGACT-GGCAGCACGCAAGGGGGACCGGGCCGATCC
* * * * * *
15869001 CCGGCTTGCGTATTTTGCCTTTCCAG-TCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCT
130 CCAGCTTGCGCATTCTGCCTTT-CAGACCCACTGAGCACCCGCACGCTCGTTTTATGGGTTGGCT
* *
15869065 TAAGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGGTTGTGGCAGCAGGA-C
194 TAAGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGA-AGGTTGTGGCAGCAGGATC
* * * * *
15869129 GGACAGCGGGA-TGGCA-A-CCCCGCGGG-GGG-GA-C-CTTGCGTATTATGCCTCTCTGACCGG
258 GG-CAGCAGGATTGGCACAGCACAGCGGGCGGGCGACCGCTTACGTATTATGCCTCTCCGACCGG
**
15869187 CTGAGCGCCCGCACGCTCGTTTTGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
322 CTGAGCGCCCGCACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * *
15869252 ATACGGAGTTCATTCCTAGTCTAAGATC-GAACCGGACTGAGGGTTGCAACAGTAGGATCGACAG
387 ATACGAAGTTCATTCCCAGTCTAAGATCAGAACCGAACCGAGGGTTACAACAGCAGGATCAACAG
15869316 CACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCT-CC
452 CACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAG-TGCC
* * * *
15869380 CGCAC-CCCCATTTCGTGGGGTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CT
516 CGCACACCCC-TTTCATGGGGTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGTC-
* * * * *
15869443 GGACCGAGGGTTGTGGTAAAGGGACCGGCAGCGCATAGAGGGGGACCGGGCCGATCCCCGGCTTG
579 GGACCGAGGGTTGTGGCAAAGGGACCAGCAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTG
* * *
15869508 CGTATTATGCCTCT-TCGATCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATA
644 CGTATTATGCCCCTCTCGAT-AGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * *
15869572 CAGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGAGTTATGGCAGTAGGATCGACAGCATG
708 CAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTA--GCAGTAGGATCGACAGCACG
* ** **
15869637 CAAGGGTGGACCGGGTCGATCCTCGATTTTCGCATTTTGCCTCTCCGATTGGCCGAGTGCCCGCA
771 CAAGGGTGGACCGGGTCGATCCTCGACTTTCGCATTTTGCCTCTCCGACCGGCCGAGCACCCGCA
* * *
15869702 CGCTTGTTTCGTGGGTTGGCTTAGGAATATGGAGTTCATTCCATGTCTAA
836 CGCTAGTTTCGTGAGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAA
15869752 GC
1 GC
15869754 CCCAGCCGGA
Statistics
Matches: 763, Mismatches: 105, Indels: 39
0.84 0.12 0.04
Matches are distributed among these distances:
874 7 0.01
875 278 0.36
876 110 0.14
878 18 0.02
879 4 0.01
880 97 0.13
881 1 0.00
882 2 0.00
884 3 0.00
887 4 0.01
889 1 0.00
890 1 0.00
891 213 0.28
892 24 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (885 bp):
GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
CGAGGGTTACGACAGCAGGACCAGCAGCAGGACTGGCAGCACGCAAGGGGGACCGGGCCGATCCC
CAGCTTGCGCATTCTGCCTTTCAGACCCACTGAGCACCCGCACGCTCGTTTTATGGGTTGGCTTA
AGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCAGGATCGGC
AGCAGGATTGGCACAGCACAGCGGGCGGGCGACCGCTTACGTATTATGCCTCTCCGACCGGCTGA
GCGCCCGCACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GAAGTTCATTCCCAGTCTAAGATCAGAACCGAACCGAGGGTTACAACAGCAGGATCAACAGCACG
CAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGTGCCCGCAC
ACCCCTTTCATGGGGTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGTCGGACCGA
GGGTTGTGGCAAAGGGACCAGCAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGTATTA
TGCCCCTCTCGATAGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACCGAGAGTTAGCAGTAGGATCGACAGCACGCAAGGGTGGA
CCGGGTCGATCCTCGACTTTCGCATTTTGCCTCTCCGACCGGCCGAGCACCCGCACGCTAGTTTC
GTGAGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAA
Found at i:15870267 original size:343 final size:349
Alignment explanation
Indices: 15869567--15870451 Score: 1022
Period size: 343 Copynumber: 2.5 Consensus size: 349
15869557 GTTGACTTAT
* * * * * *** * *
15869567 GCATACAGAGTTCATTCCCAGTCTAAGATCTGATCGGACCGAGAGTTATGGCAGTAGGATCGACA
1 GCATACAAAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTCCAGCAGCAGGATTGACA
* * * * * *
15869632 GCATGCAAGGGTGG-ACCGGGTCGATCCTCGAT-TTTCGCATTTTGCCTCTCCGATTGGCCGAGT
66 GCACGC-AGGG-GGAACCAGGTCGATCCTCG-TCTTGCGCATTATGCCTCTCCGGTTGGCTGAGT
* * *
15869695 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGAATATGGAGTTCATTCCATGTCTAAGCCCCAGC
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
15869760 CGGACCGAGGGTTGTGGCTGCAGGACCGGCAGCGAGATCGACAGCATGCAGAAGGGGACCGGGCT
193 CAGACCAAGGGTTGTGGCT----GA-C-GCAGCGAGATCGACAGCATGCAGAAGGGGACCGGGCT
* * **
15869825 GATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTAAGCGCCCGTACGTTCGTTTTGTGGGTT
252 GATCCCCGACTTACGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGTACGCTCGTTTCATGGGTT
*
15869890 GACTTAGGCATACGGAGTTCATCCCCAATCTAA
317 GACTTAGGCATACAGAGTTCATCCCCAATCTAA
* * * * *
15869923 GCATACAAAGTTCATTCCTAGTCTAAGAAT-AGA-CTGGATCGAGGGTTGCGGCAGCATG-TTCG
1 GCATACAAAGTTCATTCCTAGTCTAAG-ATCAGATC-AGACCGAGGGTTCCAGCAGCAGGATT-G
* * * * *
15869985 ACAGCACGTAGGGGGGATCAGGTCGATCCCCGTCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGT
63 ACAGCACGCAGGGGGAACCAGGTCGATCCTCGTCTTGCGCATTATGCCTCTCCGGTTGGCTGAGT
* *
15870050 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
15870115 CAGACCAAGGGTTGTGG-T-A-GC-G-G-GATC-AGCAGCATGTAGAGGGGGATCGGGCTGATCC
193 CAGACCAAGGGTTGTGGCTGACGCAGCGAGATCGA-CAGCATGCAGAAGGGGACCGGGCTGATCC
*
15870173 CC-AGCTTACGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACT
257 CCGA-CTTACGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGTACGCTCGTTTCATGGGTTGACT
* *
15870237 TAGGCGTACAGAGTTCATCCCCAGTCTAA
321 TAGGCATACAGAGTTCATCCCCAATCTAA
** * *
15870266 GCATACGGAGTTCATTCTTAGTCTAAGATCATATCAGACCGAGGGTTCCAGCAGCAGGATTGACA
1 GCATACAAAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTCCAGCAGCAGGATTGACA
* * ** * * * * *
15870331 GCACGCAGGGGGAACCAGGCCGGTTGTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCT
66 GCACGCAGGGGGAACCAGGTCGATCCTCGTCTTGCGCATTATGCCTCTCCGGTTGGCTGAGTGCC
* *
15870396 CGCACGCTCGTTTCGTGGGTTGGATTAGGCATACAGAGTTCATTCCATGTCTAAGC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15870452 ATACGGAGTT
Statistics
Matches: 456, Mismatches: 63, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
342 4 0.01
343 264 0.58
344 4 0.01
345 1 0.00
346 2 0.00
349 1 0.00
354 4 0.01
355 122 0.27
356 52 0.11
357 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (349 bp):
GCATACAAAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTCCAGCAGCAGGATTGACA
GCACGCAGGGGGAACCAGGTCGATCCTCGTCTTGCGCATTATGCCTCTCCGGTTGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCAAGGGTTGTGGCTGACGCAGCGAGATCGACAGCATGCAGAAGGGGACCGGGCTGATCCCCGA
CTTACGCATTATGCCTCTCCAGCCGGCTAAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGC
ATACAGAGTTCATCCCCAATCTAA
Found at i:15870460 original size:26 final size:26
Alignment explanation
Indices: 15870424--15870476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15870414 GTTGGATTAG
15870424 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
15870450 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15870476 G
1 G
15870477 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15871140 original size:26 final size:26
Alignment explanation
Indices: 15871104--15871154 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15871094 GTTGACTTAG
*
15871104 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15871130 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
15871155 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15871593 original size:158 final size:158
Alignment explanation
Indices: 15871130--15871632 Score: 555
Period size: 159 Copynumber: 3.2 Consensus size: 158
15871120 CCCAGTCTAA
* * *
15871130 GCATACGGAGTTCATTCCCA-GTCTATGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * *
15871194 AGCACATAGGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTTCGTCCAGCTGAGCG
65 AGCACATA-GGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* *
15871259 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * ** *
15871289 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGTAGCAGGATC-GA
* * * * * * * *
15871352 CAGCACATAGAGGGGGACTAGGCCGATCCCCGGCTTGCACATTATGTCTCTTCGGCTGGCTCAGC
64 CAGCACATAG-GGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
* *
15871417 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** ** * *
15871448 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGACCAGATTGATGGTTGTGGTAGCAGGATCAAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * *
15871512 AGTACGTAGGGGGGACCAGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACATAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
*
15871577 CCACACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
15871606 GCATATGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15871633 CATACGGAGT
Statistics
Matches: 279, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
158 100 0.36
159 175 0.63
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACATAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15871636 original size:26 final size:26
Alignment explanation
Indices: 15871606--15871658 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15871596 GTTGGCTTAG
* *
15871606 GCATATGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
15871632 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
15871658 G
1 G
15871659 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:15872353 original size:26 final size:26
Alignment explanation
Indices: 15872316--15872368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15872306 GGGGACTTAG
15872316 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
15872342 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15872368 G
1 G
15872369 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15874549 original size:159 final size:159
Alignment explanation
Indices: 15874241--15874686 Score: 442
Period size: 159 Copynumber: 2.8 Consensus size: 159
15874231 TTACGGTAGT
* * *
15874241 AGGATCGACAGCACGCAGA-GGGGACCGAGCTGATCCCTGACTTGTGCATTCTGCCTCTCCGACC
1 AGGACCGACAGCAAGCAGAGGGGGACCGAGC-GATCCCTGACTTGTGCATTCTGCCTCTCCGATC
** * * * * *
15874305 GGTTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTGTA
65 GACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTA
* *
15874369 ATCCCCAGTCGGACCGAGGGTTGTGGCAGC
130 ATCCCCAGTCGGACCAAGGGTTGTAGCAGC
* * * *
15874399 -GGAACCGACAGCAAGCAGAGGGGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGT
1 AGG-ACCGACAGCAAGCAGAGGGGGACCGAG-CGATCCCTGACTTGTGCATTCTGCCTCTCCGAT
* * * *
15874463 CGCCTCAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
64 CGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCT
** * *
15874527 AAGAT-CGGATTC-GACCAAGGGTTGTAGTAGC
129 -A-ATCCCCAGTCGGACCAAGGGTTGTAGCAGC
* * * * * * * *
15874558 AGGATCGATAGC-A-CATAGGGGGGATCGCACCGATCTCTGGCTTATGCATTCTGCCTCTCCGAT
1 AGGACCGACAGCAAGCAGA-GGGGGACCG-AGCGATCCCTGACTTGTGCATTCTGCCTCTCCGAT
* * * *
15874621 CGACTAAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CAATGTCT
64 CGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCT
15874685 AA
129 AA
15874687 GCATACGAAG
Statistics
Matches: 236, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 103 0.44
159 111 0.47
160 11 0.05
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
AGGACCGACAGCAAGCAGAGGGGGACCGAGCGATCCCTGACTTGTGCATTCTGCCTCTCCGATCG
ACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAA
TCCCCAGTCGGACCAAGGGTTGTAGCAGC
Found at i:15874899 original size:183 final size:185
Alignment explanation
Indices: 15874503--15875250 Score: 576
Period size: 183 Copynumber: 4.0 Consensus size: 185
15874493 GTTGACTTAG
* * * *
15874503 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTCGACCA-AGGGTTG-TAGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTAGAGGGTTGCCAGTAACAGGATCGA
* * * *
15874566 TAGCACATAGGGGGGATCGCACCGATCTCTGGCTTATGCATTCTGCCTCTCCGATCGACTAAGCG
65 TAGCACACAGGGGGGACCGCACCGATCTCCGGCTTATGCATTCTGCCTCTCCGACCGACTAAGCG
*
15874631 CCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAA
130 ACCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAA
* *
15874687 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGA-TAGAGGGTTGCCA-TAACAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTAGAGGGTTGCCAGTAACAGGATCGA
* * * **
15874750 TAGCACGCAGGGGGGACCGCACTGATCTCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAA-C
65 TAGCACACAGGGGGGACCGCACCGATCTCCGGCTTATGCATTCTGCCTCTCCGACCGACT-AAGC
* * * * * **
15874814 -ATCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATTCTGAGTTCATTCCTTGTCTAA
129 GACCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAA
* *
15874870 GCATACGGAGTTGATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCAGCAGCAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTAGAGGGTT---GC--CA-G--TA--
* * * * *
15874934 AGCAGGATCGATAGCACACAGGAGGGACC-AAGCTGATCTCTGGC-TAGTGCATTCTGCCTCTTC
55 A-CAGGATCGATAGCACACAGGGGGGACCGCA-CCGATCTCCGGCTTA-TGCATTCTGCCTCTCC
* ** * * * * * *
15874997 GGCCGACTGGGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-G
117 GACCGACTAAGCGACCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCAATG
15875061 TCTAA
181 TCTAA
* * * * * * * * *
15875066 GCATACGAAGTTCACTT-TCAGTCTAAGATCAGACTGGAC-CGAGGGTT-ACGGTAGCAAGATCG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGAC-CGACTAGAGGGTTGCCAGTAACAGGATCG
* * * * * * * * * *
15875128 ACAGCACGCA-GGGGAATCGAATCGATCCCCGGCTTACGCATTCTACCTCTCC-AGCCGACTGAG
64 ATAGCACACAGGGGGGACCGCACCGATCTCCGGCTTATGCATTCTGCCTCTCCGA-CCGACTAAG
* * * * * * * *
15875191 TGCCCGA-ACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGCGTTCATTCCATGTGTAA
128 CGACC-ACACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAA
15875249 GC
1 GC
15875251 CCCAGCCGGA
Statistics
Matches: 451, Mismatches: 82, Indels: 63
0.76 0.14 0.11
Matches are distributed among these distances:
182 4 0.01
183 168 0.37
184 123 0.27
185 3 0.01
186 2 0.00
187 1 0.00
188 2 0.00
189 1 0.00
190 1 0.00
192 1 0.00
194 3 0.01
195 57 0.13
196 81 0.18
197 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTAGAGGGTTGCCAGTAACAGGATCGAT
AGCACACAGGGGGGACCGCACCGATCTCCGGCTTATGCATTCTGCCTCTCCGACCGACTAAGCGA
CCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAA
Found at i:15875090 original size:196 final size:195
Alignment explanation
Indices: 15874741--15875112 Score: 462
Period size: 196 Copynumber: 1.9 Consensus size: 195
15874731 GTTGCCATAA
* * * *
15874741 CAGGATCGATAGCACGCAGGGGGGACCGCACTGATCTCCGGCTTGTGCATTCTGCCTCTCCGACC
1 CAGGATCGATAGCACACAGGAGGGACCGAACTGATCTCCGGCTAGTGCATTCTGCCTCTCCGACC
** * * * * * **
15874806 GGTTGAACATCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATTCTGAGTTCATTCCTTGTCTAAG
66 GACTGAACACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAG
* * * *
15874871 CATACGGAGTTGATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGACCAGCAG
131 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGACCAGCAG
* * *
15874936 CAGGATCGATAGCACACAGGAGGGACC-AAGCTGATCTCTGGCTAGTGCATTCTGCCTCTTCGGC
1 CAGGATCGATAGCACACAGGAGGGACCGAA-CTGATCTCCGGCTAGTGCATTCTGCCTCTCCGAC
** *
15875000 CGACTGGGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCAGTCT
65 CGACTGAAC-ACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTG-AGTTCATCCCCAGTCT
* *
15875064 AAGCATACGAAGTTCACTT-TCAGTCTAAGATCAGACTGGACCGAGGGTT
128 AAGCATACGAAGTTCA-TTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
15875113 ACGGTAGCAA
Statistics
Matches: 148, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
194 1 0.01
195 61 0.41
196 84 0.57
197 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (195 bp):
CAGGATCGATAGCACACAGGAGGGACCGAACTGATCTCCGGCTAGTGCATTCTGCCTCTCCGACC
GACTGAACACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAG
CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGACCAGCAG
Found at i:15875238 original size:379 final size:379
Alignment explanation
Indices: 15874555--15875250 Score: 845
Period size: 379 Copynumber: 1.8 Consensus size: 379
15874545 GGGTTGTAGT
* *
15874555 AGCAGGATCGATAGCACATAGGGGGGATCGCACCGATCTCTGGCTTATGCATTCTGCCTCTCCGA
1 AGCAGGATCGATAGCACACAGGAGGGATCGCACCGATCTCTGGCTTATGCATTCTGCCTCTCCGA
* * * *
15874620 TCGACTAAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCT
66 CCGACTAAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCAATGTCT
* * *
15874685 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCCATAACAGGATCGA
131 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACCATAACAAGATCGA
* * * * ** * **
15874750 TAGCACGCAGGGGGGACCGCACTGATCTCCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAACA
196 CAGCACGCAGGGGGAACCGAACTGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAACA
* * * * * *
15874815 TCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATTCTGAGTTCATTCCTTGTCTAAGCATACGGAG
261 CCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
15874880 TTGATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGACCAGC
326 TTGATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGACCAGC
* *
15874934 AGCAGGATCGATAGCACACAGGAGGGA-C-CAAGCTGATCTCTGGC-TAGTGCATTCTGCCTCTT
1 AGCAGGATCGATAGCACACAGGAGGGATCGC-A-CCGATCTCTGGCTTA-TGCATTCTGCCTCTC
* ** * *
15874996 CGGCCGACTGGGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-
63 CGACCGACTAAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCAAT
* ** * ** *
15875060 GTCTAAGCATACGAAGTTCACTT-TCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAAG
127 GTCTAAGCATACGAAGTTCA-TTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACCATAACAAG
*
15875124 ATCGACAGCACGCA-GGGGAATCGAA-TCGATCCCCGGCTTACGCATTCTACCTCTCC-AGCCGA
191 ATCGACAGCACGCAGGGGGAACCGAACT-GATCCCCGGCTTACGCATTCTACCTCTCCGA-CCGA
* * * *
15875186 CTGAGTGC-CCGAACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGCGTTCATTCCATGTGTAA
254 CTGA--ACACCGAACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15875249 GC
316 GC
15875251 CCCAGCCGGA
Statistics
Matches: 264, Mismatches: 43, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
377 3 0.01
378 44 0.17
379 212 0.80
380 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (379 bp):
AGCAGGATCGATAGCACACAGGAGGGATCGCACCGATCTCTGGCTTATGCATTCTGCCTCTCCGA
CCGACTAAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCAATGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTACCATAACAAGATCGA
CAGCACGCAGGGGGAACCGAACTGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAACA
CCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
TTGATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGACCAGC
Found at i:15875411 original size:26 final size:26
Alignment explanation
Indices: 15875381--15875433 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15875371 GTTGACTTAG
15875381 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
15875407 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15875433 G
1 G
15875434 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15875579 original size:184 final size:183
Alignment explanation
Indices: 15875257--15875592 Score: 419
Period size: 184 Copynumber: 1.8 Consensus size: 183
15875247 AAGCCCCAGC
* *
15875257 CGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACTGAGGGGGATCGACCGATCCCCAGGTTG
1 CGGACAGAGGGTTGTGGCAGCAGGACCGGCAGCACAC-GAGGGGGATCGACCGATCCCCAGGTTG
* * * *
15875322 CGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
65 CGCATTATGCCTCTCCGACCAGCTGAGCACCCACACGCCCATTTCATGGATTGACTTAGGCATAC
15875387 GGAGTTCATCCC-TAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT
130 GGAGTTCATCCCAT-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * *
15875441 CGGACAGAGGGTTGTGGCAGTAGGATCGGCATCACGC-AGGTGGGATCGAGCCGATCCCC-GGCT
1 CGGACAGAGGGTTGTGGCAGCAGGACCGGCAGCACACGAGG-GGGATCGA-CCGATCCCCAGG-T
* * * * * * *
15875504 TGTGCATTTTGCCTTTCTGACCAGCTGAGCGCCCACACGCCCATTTCATGGATTGGCTTATGCAT
63 TGCGCATTATGCCTCTCCGACCAGCTGAGCACCCACACGCCCATTTCATGGATTGACTTAGGCAT
* *
15875569 A-GATAGTTCATTCCATGTCTAAGC
128 ACG-GAGTTCATCCCATGTCTAAGC
15875593 CCCAGTCGGA
Statistics
Matches: 128, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
182 3 0.02
183 11 0.09
184 113 0.88
185 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (183 bp):
CGGACAGAGGGTTGTGGCAGCAGGACCGGCAGCACACGAGGGGGATCGACCGATCCCCAGGTTGC
GCATTATGCCTCTCCGACCAGCTGAGCACCCACACGCCCATTTCATGGATTGACTTAGGCATACG
GAGTTCATCCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT
Found at i:15875696 original size:159 final size:157
Alignment explanation
Indices: 15875482--15875845 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 157
15875472 TCACGCAGGT
* * * ** * *
15875482 GGGATCGAGCCGATCCCCGGCTTGTGCATTTTGCCT-TTCTGACCAGCTGAGCGCCCACACGCCC
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGTCGGCTCAGCGCCCACACGCCC
* * * *
15875546 ATTTCATGGATTGGCTTATGCATA-GATAGTTCATTCC-ATGTCTAAGCCCCAG-TCGGACCCAG
65 ATTTCATGGATTGACTTATGCATACGA-AGTTCATTCCTA-GTCTAAG-ACCAGACCGAACCCAG
* *
15875608 GGTTGGGGCAGCAGGACAAG-CAGCACATAAAGG
127 GGTTGCGACAGCAGGA-AAGACAGCAC--AAAGG
** *
15875641 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTCA
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCACACGCCCA
** * * **
15875706 TTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTT
66 TTTCATGGATTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGACCAGACCGAACCCAGGGTT
* ** *
15875771 GCGATAGCAGGATTGACAGCACACAGG
131 GCGACAGCAGGAAAGACAGCACAAAGG
* * * *
15875798 GGGATCAGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCT
1 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCT
15875846 GAGCACCTGC
Statistics
Matches: 170, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
157 48 0.28
158 4 0.02
159 112 0.66
160 6 0.04
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCACACGCCCA
TTTCATGGATTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGACCAGACCGAACCCAGGGTT
GCGACAGCAGGAAAGACAGCACAAAGG
Found at i:15876826 original size:158 final size:157
Alignment explanation
Indices: 15876490--15876852 Score: 428
Period size: 158 Copynumber: 2.3 Consensus size: 157
15876480 TTGGTACACC
* * * ** *
15876490 CGTTTCGTGGGTTGGCTTAGGCACAGGGAGTTTATTCCATGTCTAAGCCTCATTCGGGCCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGACGGACCGAGGG
* * * **
15876555 TTGTGGTAGCAGGACCGACAGCACGCAGCGGGATCGGCTCTATCCCCGACTTACGCATTATGCCT
66 TTGTGGCAGCAGGACCGACAACACGCAGCGGGACCGGCTAGATCCCCGACTTACGCATTATGCCT
** *
15876620 CTTCGACTGGTTCAGCACCCGTACGCT
131 CCCCGACTGGTTCAGCACCCGCACGCT
* ** *
15876647 CGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCA-GTCTAAG-TTCAGACTGGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCTCAGAC-GGACCGAG
* * * * *
15876710 GGTTGTGGCATCAGGATCGACAACACGCAAGGGGGACCGGGC-AGATCCCCGGCTTACGCATTCT
64 GGTTGTGGCAGCAGGACCGACAACACGC-AGCGGGACC-GGCTAGATCCCCGACTTACGCATTAT
*
15876774 GCCTCCCCGA-TCGGTTTAGCACCCGCACGCT
127 GCCTCCCCGACT-GGTTCAGCACCCGCACGCT
*
15876805 CGTTTCGTGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15876853 ATACGGAGTT
Statistics
Matches: 171, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
156 4 0.02
157 72 0.42
158 92 0.54
159 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGACGGACCGAGGG
TTGTGGCAGCAGGACCGACAACACGCAGCGGGACCGGCTAGATCCCCGACTTACGCATTATGCCT
CCCCGACTGGTTCAGCACCCGCACGCT
Found at i:15876861 original size:26 final size:26
Alignment explanation
Indices: 15876825--15876877 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15876815 GTAGGCTTAG
15876825 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15876851 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15876877 G
1 G
15876878 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15877305 original size:355 final size:341
Alignment explanation
Indices: 15876548--15877431 Score: 862
Period size: 355 Copynumber: 2.5 Consensus size: 341
15876538 CTCATTCGGG
* * * * *
15876548 CCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGCGGGATCGGCTCTATCCCCGACTTACGCAT
1 CCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTACGCAT
* * **
15876613 TATGCCTCTTCGACTGGTTCAGCACCCGTACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGT
66 TATGCCTCTTCGACTGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
** * * *
15876678 TCATTCCCA-GTCTAAG-TTCAGACTGGACCGAGGGTTGTGGCATCAGGATCGACAACACGCAAG
131 TCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACGCAAG
* * * * * *
15876741 GGGGACCGGGCAGATCCCCGGCTTACGCATTCTGCCTCCCCGATCGGTTTAGCACCCGCACGCTC
194 GGAGACCGGGCAGATCCCCGACTTACGCATTATGCCTCCCCGACCGGCTGAGCACCCGCACGCTC
* * * *
15876806 GTTTCGTGGGTAGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTA
259 GTTTCATGGGTAGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCA
*
15876871 GTCTAAGATCAGATCAGA
324 GTCTAAGATCAAATCAGA
* * * ** *
15876889 CTGAGGGTTATGGCAGTAGGACCAGTAGTAGGATCCACAGCACATATGAGGGGACCGGGTCGATC
1 CCGAGGG-T-T----GT--G----GTAGCAGGATCGACAGCACGCA-G-GGGGATCGGGTCGATC
* * * * * *
15876954 CCCGGCTTGCGTATTTTGCCTCTTCGACTGGCTGGGCACCCGTATGCTCATTTCATGGGTTGGCT
52 CCCGGCTTACGCATTATGCCTCTTCGACTGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCT
* * *
15877019 TAGGCATACGGAGTTCATTCCATGTCTAAGCCGCAGCCAGATCGTGGGTTGTGGCAGCAGGA-CT
117 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGGATC-
* * *
15877083 GACAACGGGATCGACAGCATGTAAAAGGAGACCGGGCTGATCCTCGACTTACGCATTATGCCTCT
181 GACAAC---A-CG-CA--A-G-----GGAGACCGGGCAGATCCCCGACTTACGCATTATGCCTCC
* * ** * *
15877148 CTGGCCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
233 CCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCAT-CCCA
* * *
15877213 -GTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCAAA-CTTGA
297 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATC-AGA
*
15877257 CCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGCGATCGGGTCGATCCCCAGCTTACGCA
1 CCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGG-GATCGGGTCGATCCCCGGCTTACGCA
* * ** * * * *
15877322 TTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGA
65 TTATGCCTCTTCGACTGGCTGAGCACCCGTACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGA
*
15877386 GTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGC
129 GTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGC
15877432 GAGACCTACA
Statistics
Matches: 434, Mismatches: 75, Indels: 54
0.77 0.13 0.10
Matches are distributed among these distances:
341 6 0.01
342 1 0.00
343 1 0.00
347 2 0.00
349 1 0.00
353 17 0.04
354 9 0.02
355 235 0.54
356 21 0.05
358 1 0.00
359 2 0.00
360 3 0.01
362 3 0.01
363 1 0.00
366 1 0.00
367 2 0.00
368 125 0.29
369 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (341 bp):
CCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTACGCAT
TATGCCTCTTCGACTGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGGATCGACAACACGCAAGGG
AGACCGGGCAGATCCCCGACTTACGCATTATGCCTCCCCGACCGGCTGAGCACCCGCACGCTCGT
TTCATGGGTAGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCAAATCAGA
Found at i:15877602 original size:159 final size:159
Alignment explanation
Indices: 15877222--15877720 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 159
15877212 AGTCTAAGCG
*
15877222 TATGGAGTTCATTCCCAGTCTAAGATCAAACTTGACCGAGGGTTGTGGTAGCAGGATCGACAGCA
1 TATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAG-AGGATCGACAGCA
* * * * * * * *
15877287 CGCAG-GGGCGATCGGGTCGATCCCCAGCTTACGCATTCTGCC-TCTCCGACCAGCTGAGCGCCC
65 CGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTTATCAGACCAACTCAGCGCCC
*
15877350 GCACGCCTGTTTCGTGGGTTGGCTTAGGCA
130 GCACGCCTGTTTCGTGGGTTGACTTAGGCA
* * ** * * * * * *
15877380 TAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCAGCGAGACCTACAG
1 TATGGAGTTCATTCCCA-GTCTAAGATCAAACT-GGACCGAGGGTTGTGGTAGAG-GATCGACAG
* * * *
15877443 CACACAGAGGGGGATCAGGTCGATCCCCGGCTTGCGCATTATGCCTTATCAG-CTAACTCAGTGC
63 CACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTTATCAGACCAACTCAGCGC
* *
15877507 CCGCATG-CTCGTTTCGTGGGTTGACTTATGCA
128 CCGCACGCCT-GTTTCGTGGGTTGACTTAGGCA
* ** * *
15877539 TATGGAGTGCATTCCCAGTCTAAGATCGGACTGGGCCGAGGGTTATGGTAGTAGGATCGACAGCA
1 TATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAG-AGGATCGACAGCA
* * * * * * * * * *
15877604 TGCA-AGGTGGGATCGGGCCGATCCCCGACTTGCGTATTTTGCC-TCTCCGGCCGACTAAGCGCC
65 CGCAGAGG-GGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTTATCAGACCAACTCAGCGCC
* *
15877667 TGCACGCTCAT-TTT--TGGGTTGGCTTAGGCA
129 CGCACGC-C-TGTTTCGTGGGTTGACTTAGGCA
*
15877697 TACGGAGTTCATT-CCATGTCTAAG
1 TATGGAGTTCATTCCCA-GTCTAAG
15877721 CATATGGAGT
Statistics
Matches: 268, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
157 10 0.04
158 89 0.33
159 153 0.57
160 14 0.05
161 1 0.00
162 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
TATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGAGGATCGACAGCAC
GCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTTATCAGACCAACTCAGCGCCCG
CACGCCTGTTTCGTGGGTTGACTTAGGCA
Found at i:15877772 original size:26 final size:26
Alignment explanation
Indices: 15877694--15877763 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
15877684 GTTGGCTTAG
15877694 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15877720 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15877746 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
15877764 CAATCTAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15879353 original size:26 final size:26
Alignment explanation
Indices: 15879305--15879355 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15879295 TGGCTTAGGC
* *
15879305 ATACGGAGTTCATTCCATTTCTAAGT
1 ATACAGAGTTCATTCCATGTCTAAGT
15879331 ATACAGAGTTCATTCCCA-GTCTAAG
1 ATACAGAGTTCATT-CCATGTCTAAG
15879356 AATTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATGTCTAAGT
Found at i:15880368 original size:159 final size:157
Alignment explanation
Indices: 15880088--15880554 Score: 490
Period size: 159 Copynumber: 2.9 Consensus size: 157
15880078 CATCGGACCA
* * * **
15880088 GATCAAGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGATCGAGCTGATCCCTAGCTTATG
1 GATCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATCCCTAGCTTGCG
* * ** * * *
15880153 CATTCTGCCTCTTCGGCCAGCTGAGCGCTCGCACACCCGTTTCGTAGGTTGGCTTAGGCATAGGG
66 CATTATGCCTCTTCGGCC-GCTGAGCGCCCGCATGCTC-TTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
15880218 GGTTCATTCGATGTCAAAGCCCCAGCT-G
129 AGTTCATTCCATGTCTAAGCACCAGATCG
* * * * *
15880246 GATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGC
1 GATCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGAGCTGATCCCTAGCTTGC
* * * * * * *
15880311 ACATTATGCCTCTCCGGCCTGCTCAGCGCCCGAATGCTCATTTCATGGGTTGACTTAGGCATACA
65 GCATTATGCCTCTTCGGCC-GCTGAGCGCCCGCATGCTC-TTTCGTGGGTTGGCTTAGGCATACG
* *
15880376 GAGTTCATTCCCA-GTCTTAG-ATCAGATCG
128 GAGTTCATT-CCATGTCTAAGCACCAGATCG
* * * *
15880405 GATTAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCTGGTCCCCAGCTTGCG
1 GATCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATCCCTAGCTTGCG
* * ** *
15880470 TATTTTGCCTCTTCGATCGACTGAGCGCCCGCATGCTCGTTCGTGGGTTGGCTTAGGCATACGGA
66 CATTATGCCTCTTCGGCCG-CTGAGCGCCCGCATGCTCTTTCGTGGGTTGGCTTAGGCATACGGA
15880535 GTTCATTCCATGTCTAAGCA
130 GTTCATTCCATGTCTAAGCA
15880555 TACGGAGTTC
Statistics
Matches: 248, Mismatches: 55, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
156 3 0.01
157 37 0.15
158 87 0.35
159 119 0.48
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GATCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATCCCTAGCTTGCG
CATTATGCCTCTTCGGCCGCTGAGCGCCCGCATGCTCTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCACCAGATCG
Found at i:15880555 original size:26 final size:26
Alignment explanation
Indices: 15880526--15880578 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15880516 GTTGGCTTAG
15880526 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15880552 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15880578 G
1 G
15880579 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15880761 original size:26 final size:26
Alignment explanation
Indices: 15880731--15880786 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
15880721 TGGGTTGACT
15880731 TAAGCATAC-GAGGTTCA-TCCTCAGTC
1 TAAGCATACGGA-GTTCATTCC-CAGTC
*
15880757 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15880783 TAAG
1 TAAG
15880787 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15881265 original size:26 final size:26
Alignment explanation
Indices: 15881235--15881287 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15881225 GTTGGCTTAG
*
15881235 GCATACCGTGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
15881261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15881287 G
1 G
15881288 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15882131 original size:881 final size:866
Alignment explanation
Indices: 15880683--15882720 Score: 2233
Period size: 881 Copynumber: 2.3 Consensus size: 866
15880673 TCTTCGGCCA
* * *
15880683 GCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGAGGTTCA
1 GCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGA-GTTCA
* *
15880748 TCCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTA
65 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTA
* * * * * * *
15880813 GCAGGATCGGCAGCACACAGGGTGGATCGGGCCGATCCCTGACTTGCACATTCTGTCTCT-TCGG
130 GCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCC-GGCTTGCGCATTCTGCCTCTCT-GG
* * * *
15880877 TCGGCTGAGCGCCCGCATGCCCATTTTGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCT
193 TCGGCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
* * * * * * * * *
15880942 AAGCCCCAGCCGGACCGAGGGTTGTGGCAATGGGTTTGGCAGCACGCAGAGGGGGATCGGGTAGA
258 AAGCCCCAG-TGGACTGAGGGTTGTGGCAATAGGATCGGCAGCACACAGAGAGGGACCGGGCAGA
** * * * * * * ** * *
15881007 TCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTCAGCTCCCACACTCTTGTTTTGTGGGTTAA
322 TCCCCGACTTACGCATTATGCCTCCCCGATCGACTCAACGCCCAAACTCTCATTTCGTAGGTTAA
* ** *
15881072 CTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCGGATCAGACCGAGCATTGTGACAGCAGGGT
387 CTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAGATCAGACCGAGCATTACGACAGCAGGAT
** * * * * ** * **
15881137 TGACAGCATGCAGTGGGGACCGGGCCGATCCCCAGCTTATGCATTCTGCCTTTTCGACCGACTTT
452 CAACAACATGCAGGGGGGACCGAGCCGATCCCCAGCATATGCATTCTAACTTTCCGACCGACTGA
* ** * * * *
15881202 GTGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACCGTGTTCATTCCATGTCTAAGCATAC
517 GTGCCCGCACACTCATTTCATGGGTTGGCGTAGGCATACAGAGTTCATTCCATGTCTAAGCATAC
* * * *
15881267 GGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCAACAGCAGGACCAGTAGCTA-G
582 AGAGTTCATTCCCAATCTAAGATCAGACCGAATCAAGGGTTACAACAGCAGGACCAGTAGC-AGG
* * * * *
15881331 ATCGGTAGCACGCAATGAGGGATCGGGCCGATCCCCAGCTTACCCATTCTACCTCTCT-GGTCGG
646 ATCGATAGCACGCAAGGAGGGACCGGGCCGATCCCCAACTTACCCATTCTACCTCTCTAGCT-GG
* * *
15881395 CTGAGCACCCGCACGTTCCTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
710 CTGAGCACCCGCACGCTCCTTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
* * *
15881460 CCCAGTCGGACTGAGGGTTCTGGCAGCAGGACCGACAGCGGGATCGACAGCACGTAGAAGGGGAC
775 CCCAGCCGGACTAAAGGTTCTGGCAGCAGGA---ACAGC---A--G-CA-CA--TAGAA-GGGAC
* * * *
15881525 CGGGCTT-ATCCCCGATTTACGCATTATGCCTCTCTGACCG
827 CGGG-TTGATCCCCGACTTACACATTATACCTCTCCGACCG
* * * * *
15881565 GCCTCTCTGGCCGGCTGAGCGCCCACGCGCTCATTTCATGGGTTGACTTAGGCAAACAGAGTTCA
1 GCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATAC-GAGTTCA
*
15881630 TCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTC-GT
65 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTG-CGGT
* * * *
15881694 AGCAGGATCGGCAGCACGTAGGGGGGACCGAGCCGATCCTC-GCGTACGCATTTTGCCTCTCTGG
129 AGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCC-CGGCTTGCGCATTCTGCCTCTCTGG
* * * * * * * *
15881758 CCGGTTTAGCACCCACACGCCCGTTTCATTGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
193 TCGGCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
* * * *
15881823 AAGCCCCAGTAGGATTGAAGGTTGTGGCAATAGGATCGGTAGCACACAGAGAGGGACCGGGCCGA
258 AAGCCCCAGT-GGACTGAGGGTTGTGGCAATAGGATCGGCAGCACACAGAGAGGGACCGGGCAGA
* *
15881888 TCCTCGACTTACGCATTATGCCTCCCCGATCGACTCAACGCCCAAACGT-TCATTTCGTAGGTTG
322 TCCCCGACTTACGCATTATGCCTCCCCGATCGACTCAACGCCCAAAC-TCTCATTTCGTAGGTTA
* * * * * * ** **
15881952 AGTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGA-CCGCACCGAGGGTTACGGTAGCAGG
386 ACTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAGATCAG-ACCGAGCATTACGACAGCAGG
* * * *
15882016 ATCAACAACATGCAGGGGGGACTGAGCCGATCCTCGGCATGTGCATTCTAACTTTCC-AGCCTG-
450 ATCAACAACATGCAGGGGGGACCGAGCCGATCCCCAGCATATGCATTCTAACTTTCCGA-CC-GA
* *
15882079 CTGAGTGCCCGCACACTCATTTCGTGGGTTGGCGTAGGCATACAGAGTTCATTCCTTGTCTAAGC
513 CTGAGTGCCCGCACACTCATTTCATGGGTTGGCGTAGGCATACAGAGTTCATTCCATGTCTAAGC
* * * ** ** *
15882144 ATACAGAGTTCATTCCTAATCTAAGATCGGATCGGTTCAAGGGTTACGGCAGTAGGACCAGTAGC
578 ATACAGAGTTCATTCCCAATCTAAGATCAGACCGAATCAAGGGTTACAACAGCAGGACCAGTAGC
* * * * * *
15882209 AGGATCGATAGCACGTAAGGGGGGACCGGGCTGATCCCCAACTTACGCATTTTGCCTCTCTAGCT
643 AGGATCGATAGCACGCAAGGAGGGACCGGGCCGATCCCCAACTTACCCATTCTACCTCTCTAGCT
** * * * *
15882274 GGCTGAGTGCTCGTACGCTCGTTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
708 GGCTGAGCACCCGCACGCTCCTTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
* * * * *
15882339 GCCCCAGCCGGACTAAAGGTTGTGGTAGCAGGATCAGCAGCACATAGTAGGGACTGGGTTGATCC
773 GCCCCAGCCGGACTAAAGGTTCTGGCAGCAGGAACAGCAGCACATAGAAGGGACCGGGTTGATCC
* * * ***
15882404 TCGGCTTGCACATTATACCTCTCCGGTTG
838 CCGACTTACACATTATACCTCTCCGACCG
* *
15882433 GCCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCA
1 GCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATAC-GAGTTCA
* * ** ** *
15882498 TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGACTAGATCGAGGGTTGCGGCA
65 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTA
* * * * *
15882563 GTAGGATCGGTAGGACGCAGGGGGGACCGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGT
130 GCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCTGGT
* *
15882628 CGGCTGAGCATCCGCATGCCCTTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
194 CGGCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
*
15882693 AGCCCTAGCTGGACTGAGGGTTGTGGCA
259 AGCCCCAG-TGGACTGAGGGTTGTGGCA
15882721 GCGAAACCGG
Statistics
Matches: 954, Mismatches: 186, Indels: 45
0.81 0.16 0.04
Matches are distributed among these distances:
867 3 0.00
868 175 0.18
869 105 0.11
870 1 0.00
871 2 0.00
872 2 0.00
873 1 0.00
875 1 0.00
878 4 0.00
880 4 0.00
881 500 0.52
882 152 0.16
883 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (866 bp):
GCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACGAGTTCAT
CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTAG
CAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCGGCTTGCGCATTCTGCCTCTCTGGTCG
GCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
CCCCAGTGGACTGAGGGTTGTGGCAATAGGATCGGCAGCACACAGAGAGGGACCGGGCAGATCCC
CGACTTACGCATTATGCCTCCCCGATCGACTCAACGCCCAAACTCTCATTTCGTAGGTTAACTTA
AGCATACGGAGTTCAATCCCAGTCTAAGATCAGATCAGACCGAGCATTACGACAGCAGGATCAAC
AACATGCAGGGGGGACCGAGCCGATCCCCAGCATATGCATTCTAACTTTCCGACCGACTGAGTGC
CCGCACACTCATTTCATGGGTTGGCGTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAG
TTCATTCCCAATCTAAGATCAGACCGAATCAAGGGTTACAACAGCAGGACCAGTAGCAGGATCGA
TAGCACGCAAGGAGGGACCGGGCCGATCCCCAACTTACCCATTCTACCTCTCTAGCTGGCTGAGC
ACCCGCACGCTCCTTCCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGC
CGGACTAAAGGTTCTGGCAGCAGGAACAGCAGCACATAGAAGGGACCGGGTTGATCCCCGACTTA
CACATTATACCTCTCCGACCG
Found at i:15882166 original size:26 final size:26
Alignment explanation
Indices: 15882116--15882168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15882106 GTTGGCGTAG
**
15882116 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
15882142 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
15882168 G
1 G
15882169 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:15882511 original size:26 final size:26
Alignment explanation
Indices: 15882481--15882536 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
15882471 TGGGTTGACT
15882481 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
15882507 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15882533 TAAG
1 TAAG
15882537 ATCTGACTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15882899 original size:26 final size:26
Alignment explanation
Indices: 15882863--15882915 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15882853 GTTGGCTTAG
15882863 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15882889 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15882915 G
1 G
15882916 ATTCTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15883620 original size:26 final size:26
Alignment explanation
Indices: 15883583--15883635 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15883573 GTTGACTTAG
*
15883583 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15883609 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15883635 G
1 G
15883636 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15884059 original size:158 final size:156
Alignment explanation
Indices: 15883609--15884110 Score: 544
Period size: 158 Copynumber: 3.2 Consensus size: 156
15883599 CCCAGTCTAA
*
15883609 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTACGGCAGTAGGATC-GCA
* * * *
15883674 GCATGCAG-GCGGGATCGGGCCGATCGCCGGCTTACGCATTTTGCCTCTCCGGCCGGCTGAGCAC
64 GCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCC-GCTGGCTGAGCAC
* * *
15883738 CCACACGCCCGTTTCGTGGGTTAGCGTAG
128 CCACACGCTCGTTTCATGGGTTAGCTTAG
* ** * * ** * *
15883767 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTGGGACCTGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GGACGGACCGAGGGTTACGGCAGTAGGATC-GC
* * * * * *
15883831 AGCATGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
63 AGCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGCT-GGCTGAGCA
*
15883896 CCCACACGCTTGTTTCATGGGTT-GACTTAG
127 CCCACACGCTCGTTTCATGGGTTAG-CTTAG
* * *
15883926 GCATACAGAGTTCATTCCCAGTCTAAGATCGGTTCGGA-CGAGGGTTACAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-ACGGACCGAGGGTTACGGCAGTAGGATCG-CA
* * * * * * *
15883990 GCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCACTCCAGCTGGCTGAGTAC
64 GCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCC-GCTGGCTGAGCAC
15884055 CCACACGCTCGTTTCATGGGTTAGCTTAG
128 CCACACGCTCGTTTCATGGGTTAGCTTAG
* **
15884084 GCATACGGAGTTCGTTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
15884111 CATACAAAGT
Statistics
Matches: 280, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 175 0.62
159 98 0.35
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTACGGCAGTAGGATCGCAGC
ATGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGCTGGCTGAGCACCCA
CACGCTCGTTTCATGGGTTAGCTTAG
Found at i:15884832 original size:153 final size:152
Alignment explanation
Indices: 15884559--15884841 Score: 356
Period size: 153 Copynumber: 1.9 Consensus size: 152
15884549 ATGGGGGATC
* * *
15884559 GGCCTGATCCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCGCCCACGCCCGTTTCATGG
1 GGCCTGATCCCCGGCTTACGCATTATACCTCTTCGGTCGGCTCAGCGCCCACGCCCGTTCCATGG
* * * ** *
15884624 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGC
66 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCTGGACCAAGGGTTGCGGCAGC
15884689 GACAGCACGCAGAGAGGGATTG
131 GACAGCACGCAGAGAGGGATTG
* * * * *
15884711 GGCC-GATCCCCGGCTTACGCGTTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCTCGTTCCGT
1 GGCCTGATCCCCGGCTTACGCATTATACCTCTTCGGTCGGCTCAGCG-CC-CACGCCCGTTCCAT
* * *
15884775 GGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGACCGAATC-GGACCAAGGGTTGCGG
64 GGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCAAGCTGGACCAAGGGTTGCGG
15884838 CAGC
127 CAGC
15884842 AGGATCGACA
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
151 37 0.34
152 6 0.05
153 60 0.55
154 7 0.06
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (152 bp):
GGCCTGATCCCCGGCTTACGCATTATACCTCTTCGGTCGGCTCAGCGCCCACGCCCGTTCCATGG
GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCTGGACCAAGGGTTGCGGCAGC
GACAGCACGCAGAGAGGGATTG
Found at i:15884936 original size:159 final size:157
Alignment explanation
Indices: 15884478--15884972 Score: 492
Period size: 159 Copynumber: 3.2 Consensus size: 157
15884468 CCCAGTCTAA
* * * * *
15884478 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCGAACCAAGGGTTGCGATAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCA-ATCGGACCAAGGGTTGCG-GAGCAGGATCGAC
*
15884542 AGCACACATG-GG-GGATCGGCCTGATCCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGC
63 AGCACACA-GAGGAGGATCGGGCTGATCCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGC
* *
15884605 G-CC-CACGCCCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** *
15884634 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTG-TG-GCA-G--CGACAG
1 GCATACGGAGTTCATTCCATGTCTAAGACCAATC-GGACCAAGGGTTGCGGAGCAGGATCGACAG
* * * * * * * *
15884694 CACGCAGA-GAGGGATTGGGCCGATCCCCGGCTTACGCGTTATGCCTCTTCGGTCGGCTCAGTGC
65 CACACAGAGGA-GGATCGGGCTGATCCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCGC
* * *
15884758 CCGCACGCTCGTTCCGTGGGTTGACTTAT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
15884787 GCATACGGAGTTCATTCCCA-GTCTAAGACCGAATCGGACCAAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACC-AATCGGACCAAGGGTTGCGG-AGCAGGATCGAC
* * * * * ***
15884851 AGCACATAGAGGAGGATCGGGCTAATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAAATGAGCG
63 AGCACACAGAGGAGGATCGGGCTGATCCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCG
* *
15884916 CCCGCACGCTCATTTGGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15884946 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15884973 CATATGGAGT
Statistics
Matches: 268, Mismatches: 54, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
149 2 0.01
150 11 0.04
151 44 0.16
152 3 0.01
153 58 0.22
154 6 0.02
155 5 0.02
156 36 0.13
157 1 0.00
158 3 0.01
159 97 0.36
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAATCGGACCAAGGGTTGCGGAGCAGGATCGACAGC
ACACAGAGGAGGATCGGGCTGATCCCCGGCTTACGCATTCTACCTCTTCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15885708 original size:26 final size:26
Alignment explanation
Indices: 15885679--15885731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15885669 GTTGACTTAG
* *
15885679 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15885705 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15885731 G
1 G
15885732 ATCATACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15885992 original size:159 final size:157
Alignment explanation
Indices: 15885705--15886208 Score: 536
Period size: 159 Copynumber: 3.2 Consensus size: 157
15885695 CCCAGTCTAA
* * * *
15885705 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCATACCGGA-CGAGGGTTGTGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * *
15885767 CAGCACGCAGGGGGAACCGGACCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTCAGCG
65 CAGCACGCAGGGGG-ACCGGGCCGATCCC-CGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCG
* *
15885832 CCCGTACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
15885862 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-GG
* * *
15885925 CAGCACGTAGAAGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
65 CAGCACGCAG--GGGGACCGGGCCGATCCCCG-CTTGTGCATTATGCCTCTCCGACCGGCTCAGC
* *
15885990 GCCCGCACGCTTGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
15886021 GCATACGGAATTCATTGCCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * * * *
15886084 TAGCACACAGGGGGGGATCAGGTCGATCCCCGGTTCGTGCATTTTGCCTTTCCGACCGACTGAGC
65 CAGCACGCA--GGGGGACCGGGCCGATCCCCGCTT-GTGCATTATGCCTCTCCGACCGGCTCAGC
* *
15886149 TCCCGCACGCTCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
15886180 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
15886209 TACAGAATTC
Statistics
Matches: 287, Mismatches: 45, Indels: 27
0.80 0.13 0.08
Matches are distributed among these distances:
156 3 0.01
157 27 0.09
158 39 0.14
159 208 0.72
160 9 0.03
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
AGCACGCAGGGGGACCGGGCCGATCCCCGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15886560 original size:513 final size:503
Alignment explanation
Indices: 15885642--15886939 Score: 1574
Period size: 513 Copynumber: 2.6 Consensus size: 503
15885632 CTCTGGTTGG
* * * *
15885642 CTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCA-GTCTAAG
1 CTGAGC-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* *
15885706 CATACGGAGTTCATTCCCAATCTAAGATCATACCGGACGAGGGTTGTG--GCAG------TAGGA
64 CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACGAGGGTTG-GAAGCAGACCACACAGGA
* * * * * *
15885763 TCGGCAGCACGCAGGGGGAACCGGACCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTC
128 TC-GTAGCACGCAGGGGGGACCGG-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATC-GCTG
*
15885828 AGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
190 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* *
15885893 AGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGTAGAAGGGGACCGGGCCGATCCCCGA
255 AGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGCCGATCCCAGA
* * * *
15885958 CTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGC
320 CTTGCGCATTATGCCTCTCCAGCCGGATCAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* ** * * *
15886023 ATACGGAATTCATTGCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGATCGATAG
385 ATACGGAATTCATTCCCAGTCTAAGATCACACT-GGACCAAGGGTTGCAGCAGCAGGATCGACAG
* *
15886087 CACACAGGGGGGGATCAGGTCGATCCCCGG-TT-CGTGCATTTTGCCTTTCCGACCGA
449 CACACA-GGGGGGATCAGGTCGATCCCCGGCTTAC--GCATTCTGCCTCTCCGACCGA
15886143 CTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGC-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
15886208 ATACAGAATTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCAACAAC
65 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGA-CGAGGGTTG-GA-AGCA-GACC-AC-AC
*
15886273 AGGATCAGTAGCACACAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC-AGTC
124 AGGATC-GTAGCACGCAGGGGGGACC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-TC
*
15886337 AGCTGAGCGCCCGCATGCCCGTTTCG-GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
186 -GCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * *
15886401 GCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACTGGGCCGATC
250 GCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGCCGATC
* *
15886466 CCTAG-CTTGCGCATTATGCCTTTCCAGCCGGATCAGAGCTCGCACGCTCGTTTCGTGGGTTGAC
315 CC-AGACTTGCGCATTATGCCTCTCCAGCCGGATCAGAGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
15886530 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACTGGGCCAAGGGTTGCAGTAGCAGGATC
379 TTAGGCATACGGAATTCATTCCCAGTCTAAGATCACACTGGACCAAGGGTTGCAGCAGCAGGATC
* ** * * * *
15886595 GACAGTACGTAGGGGGGATCGGGTCGATCCCCGGCTTACGCGTTCTGCCTCTCCGACTGG
444 GACAGCACACAGGGGGGATCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGA
* * * **
15886655 CTGAGCACCGACACGCTCGTTTCATTGGTTGGCTTTGGCATACAAAGTTCATTCCATGTCTAAGC
1 CTGAGCCCCG-CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * *
15886720 ATACGGAGTTCATTCCCAGTCTAAGAT-AGGATC-GACGATGGTT-GATAGTAGACCAGCAGCA-
65 ATACGGAGTTCATTCCCAATCTAAGATCA-GACCGGACGAGGGTTGGA-AGCAGACCA-CA-CAG
* * * *
15886781 GATCGTAGCACGCA-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGGCTCTCCGATCGACT
126 GATCGTAGCACGCAGGGGGGA-CCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCG-CT
* * * * * * *
15886845 GACCACCTGCACACTCGTTGCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
189 GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * *
15886910 CAGTCGGACCGAGGGTTGTGCCAGCAGGAC
254 CAGCCGGACCGAGGGTTGTGGCAGCGGGAC
15886940 GCAGCGGGCG
Statistics
Matches: 690, Mismatches: 79, Indels: 52
0.84 0.10 0.06
Matches are distributed among these distances:
500 3 0.00
501 89 0.13
502 10 0.01
503 1 0.00
504 55 0.08
505 81 0.12
506 7 0.01
507 7 0.01
508 5 0.01
510 7 0.01
511 6 0.01
512 121 0.18
513 219 0.32
514 77 0.11
515 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (503 bp):
CTGAGCCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACGGAGTTCATTCCCAATCTAAGATCAGACCGGACGAGGGTTGGAAGCAGACCACACAGGATCG
TAGCACGCAGGGGGGACCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGCCGATCCCAGACTTGCG
CATTATGCCTCTCCAGCCGGATCAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AATTCATTCCCAGTCTAAGATCACACTGGACCAAGGGTTGCAGCAGCAGGATCGACAGCACACAG
GGGGGATCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGA
Found at i:15886611 original size:158 final size:157
Alignment explanation
Indices: 15886282--15886720 Score: 343
Period size: 158 Copynumber: 2.8 Consensus size: 157
15886272 CAGGATCAGT
* ** * * * * * *
15886282 AGCACACAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGTCAGCTGAGCGC
1 AGCACGCAGGGGGGACTGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCAGCCAGATCAGAGC
* * * *
15886347 CCGCATGCCCGTTTCGGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
66 CCGCACGCCCGTTTCGGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCGG
* ** * *
15886412 ACCGAGGGTTGTGGCAGCGGGACTGGC
131 ACCAAGGGTTGCAGCAGCAGGACTGAC
* *
15886439 AGCACGCAGAGGGGGACTGGGCCGATCCCTAGCTTGCGCATTATGCCTTTCCAGCCGGATCAGAG
1 AGCACGCAG-GGGGGACTGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCAGCCAGATCAGAG
* *
15886504 CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAC-A
65 CCCGCACGCCCGTTTCG-GGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG--CACTA
* * *
15886567 -CTGGGCCAAGGGTTGCAGTAGCAGGA-TCGAC
126 GCCGGACCAAGGGTTGCAGCAGCAGGACT-GAC
* * * ** * * * * * * *
15886598 AGTACGTAGGGGGGA-TCGGGTCGATCCCCGGCTTACGCGTTCTGCCTCTCC-GACTG-GCTGAG
1 AGCACGCAGGGGGGACT-GGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCAGCCAGATCAGAG
* ** * * **
15886660 CACCGACACGCTCGTTTCATTGGTTGGCTTTGGCATACAAAGTTCATTCCATGTCTAAGCA
65 C-CCG-CACGCCCGTTTC-GGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15886721 TACGGAGTTC
Statistics
Matches: 226, Mismatches: 45, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
156 7 0.03
157 17 0.08
158 135 0.60
159 61 0.27
160 4 0.02
161 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGGGGACTGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCAGCCAGATCAGAGC
CCGCACGCCCGTTTCGGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCGG
ACCAAGGGTTGCAGCAGCAGGACTGAC
Found at i:15886723 original size:26 final size:26
Alignment explanation
Indices: 15886692--15886744 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15886682 GTTGGCTTTG
15886692 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
15886718 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15886744 G
1 G
15886745 ATAGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15888807 original size:170 final size:171
Alignment explanation
Indices: 15888481--15888809 Score: 432
Period size: 170 Copynumber: 1.9 Consensus size: 171
15888471 CCGAGGGTTA
* * *
15888481 CAGCAGCAGGATCGATAGCACGCAGGGAAGGATTGGGCCGATCCCCGGCTTACGCATTCTACCTC
1 CAGCAGCAGGATCGATAGCACACAGGGAAGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTC
* ** * * *
15888546 TCCAGTCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCC
66 TCCAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTACGCATACGAAGTTCATTCCC
* ** *
15888611 AGTCTAAGTCTGGACCGGATCGAGGGTTGCGATAGCAGGAC
131 AGTCTAAGCCCAGACCGGACCGAGGGTTGCGATAGCAGGAC
* * * * *
15888652 CAGCAGCAGGATCGTTAGCACACAGGG-GGGGTCGAGCCGATCCCCGGCTTGCGCATTCTGCCTC
1 CAGCAGCAGGATCGATAGCACACAGGGAAGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTC
*
15888716 TCC-GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTACGCATACGGAGTTCATT-C
66 TCCAG-CCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTACGCATACGAAGTTCATTCC
15888779 CATGTCTAAGCCCCAG-CCGGACCGAGGGTTG
130 CA-GTCTAAG-CCCAGACCGGACCGAGGGTTG
15888810 TGGCAGTAGG
Statistics
Matches: 136, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
169 4 0.03
170 105 0.77
171 27 0.20
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (171 bp):
CAGCAGCAGGATCGATAGCACACAGGGAAGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTC
TCCAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTACGCATACGAAGTTCATTCCC
AGTCTAAGCCCAGACCGGACCGAGGGTTGCGATAGCAGGAC
Found at i:15889653 original size:26 final size:26
Alignment explanation
Indices: 15889617--15889669 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15889607 GTTGGCTTAG
15889617 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15889643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15889669 G
1 G
15889670 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15890838 original size:158 final size:155
Alignment explanation
Indices: 15890377--15890878 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 155
15890367 TCTAGTCTAA
* * * * * *
15890377 GCATACAGAGTTCATTCCCAATCTAAGATCAAACTGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
* * * * *
15890442 GCACGCAGGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGGGCC
65 GCACGAAGG-GGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCC
* ** *
15890507 TGCACGC-CTGTTTCATGGATTGGCTTAG
128 CGCACGCTC-GTTTTGTGGGTTGGCTTAG
* ** * ** * *
15890535 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAAGGTTTTGGCAGCGGGATC-AG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGA-
* * * * * * * *
15890598 CAGCATGCAGAGGGGGACCGAGCCGATCCCCGTCTTGCGTATTATGCCTAT-CTAGTTGGCTCAG
63 CAGCACG-A-AGGGGGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CTGGCTAAG
* *
15890662 CGCCCGCACGCTCATTTTGTGGGTTGACTTAG
124 CGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * *
15890694 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
* * *
15890759 GCACGTAAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCGCC
65 GCACG-AAGGGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCC
* *
15890824 CGTACGCTCGTTTTGTGGGTTGGCTCAG
128 CGCACGCTCGTTTTGTGGGTTGGCTTAG
15890852 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
15890879 CATACGAAGT
Statistics
Matches: 271, Mismatches: 59, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 145 0.54
159 115 0.42
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACAG
CACGAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCCCGC
ACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:15890881 original size:26 final size:26
Alignment explanation
Indices: 15890852--15890904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15890842 GTTGGCTCAG
*
15890852 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15890878 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15890904 G
1 G
15890905 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15891248 original size:26 final size:26
Alignment explanation
Indices: 15891218--15891271 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15891208 TGGGTTGACT
15891218 TAGGCATACGAAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
* * *
15891244 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
15891270 TA
1 TA
15891272 AGATCGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:15891749 original size:26 final size:26
Alignment explanation
Indices: 15891719--15891771 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15891709 GTTGGCTTAG
15891719 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15891745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15891771 G
1 G
15891772 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15892100 original size:26 final size:26
Alignment explanation
Indices: 15892071--15892123 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15892061 GTTGACTTAG
15892071 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15892097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15892123 G
1 G
15892124 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15892113 original size:352 final size:340
Alignment explanation
Indices: 15891661--15892301 Score: 870
Period size: 352 Copynumber: 1.9 Consensus size: 340
15891651 CTCGGCTTTG
* * *
15891661 GCATTTTGCCTCTCCGACCGACTGAGTGCTCGCACGCTAGTTTCATGAGTTGGCTTAGGCATACG
1 GCATTATGCCTCTCCGACCGACTGAGTGCCCGCACGCTAGTTTCATGAGTTGACTTAGGCATACG
*
15891726 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGT
66 GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGT
* * * *
15891791 TGCGACAGCAGGACCAGCAGCAGGATCGGCAGCACGTAAAGGGGACCGGGCCGATTCTCGGCTTG
131 TGCAACAGCAGGACC-G-A-CAGCA-C-GCAG---G----GGGGACCGGGCCGATCCCCGGCTTG
* * * *
15891856 CACATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAC
184 CACATTCTACCTCTCCGATCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAC
* *
15891921 AAATTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACAGCGGGA
249 AAAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACAGCGGGA
15891986 TCGACAGCACGTAGAGGGGGACCTTGC
314 TCGACAGCACGTAGAGGGGGACCTTGC
* * * * ** *
15892013 GCATTATGCCTCTCCGATCGGCTGAGTGCCCGCATGCTCGTTTTGTGCGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGACCGACTGAGTGCCCGCACGCTAGTTTCATGAGTTGACTTAGGCATACG
15892078 GAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGG
66 GAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGG
* *
15892142 TTGCAACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACC
130 TTGCAACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTACC
* * * * ***
15892207 TTTCCGGTCGGCTGAGCTCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
195 TCTCCGATCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTC
* *
15892272 CATGTCTAAACCCCAGCTGGACCGAGGGTT
260 CATGTCTAAACCCCAACCGGACCGAGGGTT
15892302 ATGGTAGCGG
Statistics
Matches: 256, Mismatches: 32, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
340 113 0.44
344 1 0.00
347 4 0.02
348 1 0.00
349 4 0.02
350 1 0.00
351 1 0.00
352 128 0.50
353 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (340 bp):
GCATTATGCCTCTCCGACCGACTGAGTGCCCGCACGCTAGTTTCATGAGTTGACTTAGGCATACG
GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGT
TGCAACAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCT
CTCCGATCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCC
ATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCAGTAGGACCGACAGCGGGATCGACAGCACGT
AGAGGGGGACCTTGC
Found at i:15892245 original size:850 final size:852
Alignment explanation
Indices: 15890314--15892600 Score: 2705
Period size: 850 Copynumber: 2.7 Consensus size: 852
15890304 CTTTGGTCGA
* * * *
15890314 CTGAGTGCTCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCTAGTCTAAGC
1 CTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * *
15890379 ATACAGAGTTCATTCCCAATCTAAGATC-AAACTGGACCGAGGGTTGCGGTAGCAAGATCGACAG
66 ATACGGAGTTCATTCCCAGTCTAAGATCGAAAC-GGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * *
15890443 CACGCAGGAGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGGGCCT
130 CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGA-GTCCT
** * *
15890508 GCACGCCTGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
194 GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGA
* * * * *
15890573 CCGAAGGTTTTGGCAGCGGGA-TCAGCAGCATGCAGAGGGGGACCGAGCCGATCCCCGTCTTGCG
258 CCGAGGGTTATGGCAGCGGGACT-AGCAGCACGTAGAGGGGGACCGAGCCGATCCCCGGCTTGCG
* * * ** *
15890637 TATTATGCCTATCTAGTTGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGG
322 TATTATGCCTCTCTAGATGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * *
15890702 AGTTCATTCTTAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGTAGGATCGACAGCACGTAA
387 AGTTCATTCCTAGTCTAAGATCAGACCGGAC-GAGGGTT--GGTAGTAGGATCGACAGCACGCAG
** * * * * * *
15890767 GGGGGACCAGGCCAATCCCCGGC-TTGCGCATTCTACCTCTCCGACTGGCTGAGCGCCCGTACGC
449 GGGGGACC-GGCTGAT-CCCGGCTTTG-GCATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGC
* ** *
15890831 TCGTTTTGTGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCC
511 TAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCC
* * * *
15890896 CAGTCTAAGATTGGACCGGACCGAGGGTTGCGATAGCAGGACTAGCAGCAGGACTGGCAGCACGC
576 CAGTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGACTGGCAGCACGC
*** * ** * * *
15890961 TGGGGGGGGACCGGGTCGATCCCCAGCTTGCGTATTCTGCCTTTCTGACCCACTGAGCACCTGCA
641 TGAAAGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCCACTGAGCACCCGCA
* * * *
15891026 CGCTTGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAATCCCCAACCAGACTG
706 CGCTCGTTTTATGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAACCAGACCG
* ** * * *
15891091 AAGGTTGTGGCAGTAGGATCGGTAGCAGGATTGGCAGCATGTAGAGGGGGACTGGGCTGATCCCC
771 AAGGTTGTGGCAGTAGGACCGACAGCAGGATCGACAGCACGTAGAGGGGGAC---GCT-AT---C
* *
15891156 GGCTTACGTATTATTCCTCTCCGGCTGG
829 -G--T-CGCATTATGCCTCTCCGGCTGG
** * * *
15891184 CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAGGC
1 CTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * *
15891249 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCAGGATCGACAAC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * *
15891314 ATGCAGGGGGAACCGGGCTGATCCCCGGCTTGTGGATTCTACCTCTCCGGCCGACTGAGTGCCTG
131 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGT-CCTG
* * * * * * * *
15891379 CACACTCTTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTACATCTCTAAGCCCCAGTCGGAT
195 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGAC
* * * *
15891444 CGAGGGTTGTGGCAGTGGGACTAGCAGCACGTAGAGGGGGACCGAGTCGATCCCTGGCTTGCGTA
259 CGAGGGTTATGGCAGCGGGACTAGCAGCACGTAGAGGGGGACCGAGCCGATCCCCGGCTTGCGTA
* * * * *
15891509 TTATGCCCCTCTGGCTAGCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAT
324 TTATGCCTCTCTAGATGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAG
*
15891574 TTCATTCCTAGTCTAAGATC-GAGCCAGATCGAGGGTT-GTAGTAGGATCGACAGCACGCAGGGG
389 TTCATTCCTAGTCTAAGATCAGA-CCGGA-CGAGGGTTGGTAGTAGGATCGACAGCACGCAGGGG
*
15891637 GGACCGGACTGATCCTCGGCTTTGGCATTTTGCCTCTCCGACCGACTGAGTGCTCGCACGCTAGT
452 GGACCGG-CTGATCC-CGGCTTTGGCATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGCTAGT
* *
15891702 TTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
515 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGT
* *
15891767 CTAAGATCGAATCGGACTGAGGGTTGCGACAGCAGGACCAGCAGCAGGA-TCGGCAGCACG-T-A
580 CTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGACT-GGCAGCACGCTGA
* * * * *
15891829 AAGGGGACCGGGCCGATTCTCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCACCCGCACGC
644 AAGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCCACTGAGCACCCGCACGC
* * * * *
15891894 TCGTTTTGTGGGTTGGCTTAGGCATACAAATTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
709 TCGTTTTATGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAG
*
15891959 GTTGTGGCAGTAGGACCGACAGCGGGATCGACAGCACGTAGAGGGGGAC-CT-T-G-CGCATTAT
774 GTTGTGGCAGTAGGACCGACAGCAGGATCGACAGCACGTAGAGGGGGACGCTATCGTCGCATTAT
*
15892020 GCCTCTCC-GATCGG
839 GCCTCTCCGGCT-GG
** *
15892034 CTGAGTGCCCGCATGCTCGTTTTGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * **
15892099 ATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCAACAGCAGGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * *
15892164 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTCCGGTCGGCTGAGCTCCCG
131 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAG-TCCTG
*
15892229 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCTGGAC
195 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-GGAC
* ** * * *
15892294 CGAGGGTTATGGTAGCGGGACCGGCAGCGCGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCA
259 CGAGGGTTATGGCAGCGGGACTAGCAGCACGTAGAGGGGGACCGAGCCGATCCCCGGCTTGCGTA
* * * *
15892359 TTATGCCTCT-TCGATCGGCTTAGCGCCCGCACACTCATTTCATGGGTTGACTTATGCATACAAA
324 TTATGCCTCTCTAGAT-GGCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAA
* * * * *
15892423 GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGAGTTATGGCAGTAGGATCGACAGCATGCAGG
388 GTTCATTCCTAGTCTAAGATCAGACCGGA-CGAG-GGT-TGGTAGTAGGATCGACAGCACGCAGG
* ** * * *
15892488 GGTGGACCGGGTCGATCCCTGATTTTTGCATTTTGCCTCTCCGGCTGGA-TGAGTGCCCGCACGC
450 GG-GGACCGGCT-GATCCC-GGCTTTGGCATTTTGCCTCTCCGAC-CGACTGAGTGCCCGCACGC
* * *
15892552 TTGTTTCATGGGTTGGCTTAGGAATATGGAGTTCATTCCATGTCTAAGC
511 TAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15892601 CCCAGCCGGA
Statistics
Matches: 1205, Mismatches: 191, Indels: 58
0.83 0.13 0.04
Matches are distributed among these distances:
849 6 0.00
850 371 0.31
851 5 0.00
852 1 0.00
853 26 0.02
854 93 0.08
855 2 0.00
859 1 0.00
861 2 0.00
865 150 0.12
866 6 0.00
867 181 0.15
868 3 0.00
869 3 0.00
870 351 0.29
871 4 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (852 bp):
CTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGTCCTGC
ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGACCG
AGGGTTATGGCAGCGGGACTAGCAGCACGTAGAGGGGGACCGAGCCGATCCCCGGCTTGCGTATT
ATGCCTCTCTAGATGGCTTAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT
CATTCCTAGTCTAAGATCAGACCGGACGAGGGTTGGTAGTAGGATCGACAGCACGCAGGGGGGAC
CGGCTGATCCCGGCTTTGGCATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGCTAGTTTCATG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCGAACCGGACCGAGGGTTGCGACAGCAGGACCAGCAGCAGGACTGGCAGCACGCTGAAAGGGGA
CCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCCACTGAGCACCCGCACGCTCGTTTT
ATGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGG
CAGTAGGACCGACAGCAGGATCGACAGCACGTAGAGGGGGACGCTATCGTCGCATTATGCCTCTC
CGGCTGG
Found at i:15892388 original size:159 final size:157
Alignment explanation
Indices: 15892148--15892758 Score: 474
Period size: 159 Copynumber: 3.8 Consensus size: 157
15892138 AGGGTTGCAA
* * *
15892148 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCT-TTCC
1 CAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT-C
* * * *
15892212 GGTCGGCTGAGCTCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 -GTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
15892277 CTAAACCCCAGCTGGACCGAGGGTTATGG
129 CTAAACCCCAGCTGGACCGAGGGTTATGG
* * * * *
15892306 TAGCGGGACCGGCAGCGCGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
1 CAGCAGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
* * * * **
15892371 GATCGGCTTAGCGCCCGCACACTCATTTCATGGGTTGACTTATGCATACAAAGTTCATTCCCA-G
65 G-TCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* * *
15892435 TCTAAGA--TCAGATCGGACCGAGAGTTATGG
128 TCTAA-ACCCCAGCT-GGACCGAGGGTTATGG
* * * * * ** ** * *
15892465 CAGTAGGATCGACAGCATGCAGGGGTGGACCGGGTCGATCCCTGATTTTTGCATTTTGCCTCTCC
1 CAGCAGGACCGACAGCACGCAGGGG-GGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC
* * * ** * *
15892530 GGCTGGATGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGAATATGGAGTTCATTCCATGT
65 GTC-GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
15892595 CTAAGCCCCAGCCGGACCGAGGGCTGTGGCTGCAGG
129 CTAAACCCCAGCTGGACCGAGGG-T-T--AT---GG
* ** * * * *
15892631 ATCAGCAGCGAGATCGACAGCACGCAAAAGGGGATCGGGCTGATCCCTGACTTGCGCATTATGCC
1 --CAGCA--G-GACCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCC
* * * ** * * *
15892696 TCTCCGGCCGGCTAAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
60 TCTTC-GTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
15892759 CCCCAATCTA
Statistics
Matches: 350, Mismatches: 78, Indels: 37
0.75 0.17 0.08
Matches are distributed among these distances:
158 28 0.08
159 209 0.60
160 10 0.03
161 1 0.00
163 1 0.00
166 2 0.01
168 4 0.01
170 1 0.00
171 89 0.25
172 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
CAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCG
TCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAACCCCAGCTGGACCGAGGGTTATGG
Found at i:15893114 original size:343 final size:349
Alignment explanation
Indices: 15892414--15893298 Score: 1016
Period size: 343 Copynumber: 2.5 Consensus size: 349
15892404 GTTGACTTAT
* * * * * *
15892414 GCATACAAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGAGTTATGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGTTCGACA
* * * * ** * *
15892479 GCATGCAGGGGTGGACCGGGTCGATCCCTGAT-TT-TTGCATTTTGCCTCTCCGGCTGGATGAGT
66 GCACGCAGGGG-GGACCGGGTCGATCCCCG-TCTTGCT-CATTATGCCTCTCCGATTGGCTGAGC
* * *
15892542 GCCCGCACGCTTGTTTCATGGGTTGGCTTAGGAATATGGAGTTCATTCCATGTCTAAGCCCCAGC
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * **
15892607 CGGACCGAGGGCTGTGGCTGCAGGATCAGCAGCGAGATCGACAGCACGCAAAAGGGGATCGGGCT
193 CAGACCAAGGGCTGTGGCAACAGGATCAGCAGC--GATCGACAGCACG----AGGGGATCGGGCT
* * * *
15892672 GATCCCTGACTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCCATACGCTCGTTTCGTGGGTT
252 GATCCCAGACTTGCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCATACGCTCATTTCATGGGTT
*
15892737 GACTTAGGCATACGGAGTTCATCCCCAATCTAA
317 GACTTAGGCATACAGAGTTCATCCCCAATCTAA
* * * *
15892770 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCATGTTCGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGTTCGACA
* * *
15892835 GCACGTAGGGGGGATCGGGTCGATCCCCGTCTTGCTCATTCTGCCTCTCCGATTGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGTCTTGCTCATTATGCCTCTCCGATTGGCTGAGCGCC
* * * * *
15892900 CGCACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * *
15892965 ACCAAGGGTTGTGGCAACGGGATCAGCAGC-AT-G-TAG-A-G-GGGGATCGGGCTGATCCCCAG
196 ACCAAGGGCTGTGGCAACAGGATCAGCAGCGATCGACAGCACGAGGGGATCGGGCTGAT-CCCAG
* * * *
15893024 -CTTGCGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAGG
260 ACTTGCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCATACGCTCATTTCATGGGTTGACTTAGG
* *
15893088 CGTACAGAGTTCATCCCCAGTCTAA
325 CATACAGAGTTCATCCCCAATCTAA
* * * * * * *
15893113 GCATACGGAGTGCATTCCTAGTCTAAGATCATATCAGACCGAGGGTTCCAGCAGCAGGATT-GAT
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGG-TTCGAC
* * * * *** * * *
15893177 AGCACGCAGGGGGAACCAGGCCGGTTGTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCCGTCTTGCTCATTATGCCTCTCCGATTGGCTGAGCGC
*
15893242 CCGCACGCTCGTTTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15893299 AAACAGAGTT
Statistics
Matches: 452, Mismatches: 73, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
343 249 0.55
344 6 0.01
348 1 0.00
349 1 0.00
350 2 0.00
351 1 0.00
352 2 0.00
354 1 0.00
355 124 0.27
356 65 0.14
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (349 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGTTCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGTCTTGCTCATTATGCCTCTCCGATTGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCAAGGGCTGTGGCAACAGGATCAGCAGCGATCGACAGCACGAGGGGATCGGGCTGATCCCAGA
CTTGCGCATTATGCCTCTCCAGCCGGCTAAGCGCCCATACGCTCATTTCATGGGTTGACTTAGGC
ATACAGAGTTCATCCCCAATCTAA
Found at i:15894297 original size:159 final size:157
Alignment explanation
Indices: 15894017--15894319 Score: 351
Period size: 159 Copynumber: 1.9 Consensus size: 157
15894007 AGACCAGATC
* * *
15894017 GAGGGTTGTGGCAGCAGGATTGACAGCACATAGGGGGGACCGAGCCGATCCCCGACTGCGCATTC
1 GAGGGTTGTGGCAGCAGGACTGACAGCACATAGGGGGGACCGAGCCGATCCCCGACTGCACATTA
* * * ** * *
15894082 TGCCTCTTCGTCCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTC
66 TGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTAATGGGTTGACTTTGGCATACGGAGTTC
15894147 AGT-CCATGTCTAAGCCCCAGCCGGACT
131 AGTCCCA-GTCTAAGCCCCAGCCGGACT
** * * *
15894174 GAGGGTTGTGGCAGTGGGACTGGCAGCACATAGAGGGGGACC-AGGTCGATCCCCGGCTTGCACA
1 GAGGGTTGTGGCAGCAGGACTGACAGCACATAG-GGGGGACCGA-GCCGATCCCCGAC-TGCACA
* ** * *
15894238 TTATGTCTCTTCGGCTGGCTCAGCGCCCGCACGCTCATTTAATGGGTTGACTTAT-GCATACGGA
63 TTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTAATGGGTTGACTT-TGGCATACGGA
*
15894302 GTTCATTCCCAGTCTAAG
127 GTTCAGTCCCAGTCTAAG
15894320 ATTGGACCAG
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
157 30 0.25
158 19 0.16
159 67 0.56
160 4 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGGGTTGTGGCAGCAGGACTGACAGCACATAGGGGGGACCGAGCCGATCCCCGACTGCACATTA
TGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTAATGGGTTGACTTTGGCATACGGAGTTC
AGTCCCAGTCTAAGCCCCAGCCGGACT
Found at i:15894340 original size:159 final size:157
Alignment explanation
Indices: 15893977--15894477 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 157
15893967 CCTAGTCTAA
* * *
15893977 GCATACGGAGTTCATTTCCA-ATCTATGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATTGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGA-TGAC
* * * *
15894041 AGCACATAGGGGGGACC-GAGCCGATCCCCGAC-TGCGCATTCTGCCTCTTCGTCCAGCTGAGCA
64 AGCACATAGGGGGGACCAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
* **
15894104 CCCGCACGCCCGTTTCGTGGGTTGGCTT-T
128 CCCGCACGCTCGTTTAATGGGTTGGCTTAT
* * ** * * ** *
15894133 GGCATAGGGAGTTCAGTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGTGGGACTGG
1 -GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGATTGAGGGTTGTGGCAGCAGGA-TGA
* * * * * * *
15894197 CAGCACATAGAGGGGGACCAGGTCGATCCCCGGCTTGCACATTATGTCTCTTCGGCTGGCTCAGC
63 CAGCACATAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
* *
15894262 GCCCGCACGCTCATTTAATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTAATGGGTTGGCTTAT
** * * *
15894293 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGATTGATGGTTGTGGTAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGAT-GAC
* * * * * *
15894357 AGTACATAGGGGGGACCAGGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
64 AGCACATAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* *
15894422 CCGCACGCTCGTTTTATGGGTTGGCTTAG
129 CCGCACGCTCGTTTAATGGGTTGGCTTAT
* *
15894451 GCATATGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15894478 GGTACGGAGT
Statistics
Matches: 273, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 54 0.20
158 114 0.42
159 97 0.36
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATGACAG
CACATAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
GCACGCTCGTTTAATGGGTTGGCTTAT
Found at i:15895197 original size:26 final size:26
Alignment explanation
Indices: 15895161--15895213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15895151 GGGGACTTAG
*
15895161 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15895187 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15895213 G
1 G
15895214 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15896264 original size:158 final size:157
Alignment explanation
Indices: 15895904--15896288 Score: 367
Period size: 158 Copynumber: 2.4 Consensus size: 157
15895894 GTAGGGGACT
*
15895904 TGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 TGGTTGAGTGCCCGCACACTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCA-GTCTA
* * * * **
15895969 AG--CCCCAGTTGGACTGAGGGTTGTGGCAGCAGGACTGGCAGCACGTAGAGGGGCACCGGGCTG
64 AGATCACCAGAT-G-CTGAGGGTTGTGGCAGAAGGACTGACAGCACACAGAGGGGCACCGGGCTG
* * *
15896032 GTCCCTAGCTTGCGCATTATGCCTCTTTGGC
127 ATCCCTAGCTTGCGAATTATGCCTCTCTGGC
* * * * * *
15896063 TGGCTCAATGCCCGCACACTAGTTTCAT-GGTTGACTTATGCATACGGAGTTCATTCCTAGTCTA
1 TGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCC-AGTCTA
* *
15896127 AGATCGGACCAGAT-C-GAGGGTTGTGGTAGAAGGA-TCGACAGCACACAGAGGGG-ACCGAG-T
64 AGATC--ACCAGATGCTGAGGGTTGTGGCAGAAGGACT-GACAGCACACAGAGGGGCACCGGGCT
*
15896187 CGAT-CCTCAGCTTGCGAATTCTGCCTCTCTGG-
126 -GATCCCT-AGCTTGCGAATTATGCCTCTCTGGC
* * * *
15896219 TAGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCCAATCT
1 T-GGTTGAGTGCCCGCACACTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATT-CCAGTCT
15896284 AAGAT
63 AAGAT
15896289 TTTGAGCCAC
Statistics
Matches: 184, Mismatches: 29, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
156 5 0.03
157 50 0.27
158 95 0.52
159 28 0.15
160 1 0.01
162 5 0.03
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (157 bp):
TGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCAGTCTAAG
ATCACCAGATGCTGAGGGTTGTGGCAGAAGGACTGACAGCACACAGAGGGGCACCGGGCTGATCC
CTAGCTTGCGAATTATGCCTCTCTGGC
Found at i:15897450 original size:158 final size:157
Alignment explanation
Indices: 15896984--15897475 Score: 516
Period size: 158 Copynumber: 3.1 Consensus size: 157
15896974 CCCAATCTAA
* * *
15896984 GCATAC-GATGTTCATT-CTCAGTCTAAGATCGGACCGAACCGAGGGTTACGGTAGTAGGATCGA
1 GCATACGGA-GTTCATTCCT-AGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGATCGA
* * **
15897047 TAGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCG
64 TAGCACACAGGGGGGACCGAGTCGATCCT-GGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCG
* * * *
15897112 CCCGCATGCCCATTTCGTGGGTTGGTTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
15897142 GCATAGGGAGTTCATTCC-ATGTCT-A-ATCCCCAGTCGGACCGAGGGTTGTC-GTAGC-GAGAC
1 GCATACGGAGTTCATTCCTA-GTCTAAGAT-CGGA-TCGAACCGAGGGTTG-CGGTAGCAG-GAT
** * * * * *
15897202 CGGCAGCA-AGCAGAGGGGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGCCT
61 CGATAGCACA-CAG-GGGGGACCGAGTCGAT-CCTGGCTTGTGCATTCTGCCTCTCCGGTCGACT
* * *
15897266 CAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
123 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
15897301 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATTC-AACTGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGAACCGAGGGTTGCGGTAGCAGGATCGAT
* * * *
15897365 AGCACACAGGGGGGATCGCGTCGATCTCTGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGAGC
65 AGCACACAGGGGGGACCGAGTCGATC-CTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGC
15897430 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
15897459 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
15897476 AATGTCTAAG
Statistics
Matches: 271, Mismatches: 46, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 133 0.49
159 118 0.44
160 10 0.04
161 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGAACCGAGGGTTGCGGTAGCAGGATCGATA
GCACACAGGGGGGACCGAGTCGATCCTGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15897691 original size:183 final size:183
Alignment explanation
Indices: 15897301--15898042 Score: 739
Period size: 183 Copynumber: 4.0 Consensus size: 183
15897291 GTTGACTTAG
* * * * *
15897301 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATTC-AACTGAGGGTTGCGG-TAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACTGAGGGTTGCGGATAACAGGATCGA
* * ** * ** *
15897364 TAGCACACAGGGGGGATCGCGTCGATCTCTGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGA-
65 CAGCACACA-GGGGGACCGCACCGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGA-AC
*
15897428 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAA
* *
15897485 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCGGACAGAGGGTTGTC-G-TAACAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTG-CGGATAACAGGATCGA
* *
15897548 CAGCACGCAGGGGCGACCGCACTGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAACG
65 CAGCACACAGGGG-GACCGCACCGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAACG
* * *
15897613 -TCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATCCTGAGTTCATTCCTTGTCTAA
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAA
* * *
15897668 GCATACGGAGTTGATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT------GC-GGA-TA--A
* * * * * *
15897733 GCAGGATCGATAGCACACAGGAGGGACCG-AGCCGATCTCTGGCTAGCGTATTCTGCCTCTTCGG
56 -CAGGATCGACAGCACACAGG-GGGACCGCA-CCGATCTCCGGCTTGTGCATTCTGCCTCTCCGG
* * * *
15897797 CCGGCTGACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTC
118 CCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCAT-TCCATGTC
15897861 TAA
181 TAA
* * * *
15897864 GCATACGAAGTTCACTT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GATAGCAAGATCGA
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGATAACAGGATCGA
* * * * * * **
15897927 CAGCACGCAGGGGAACCGAACCGATCCCCGGCTTATGCATTCTGCCTCTCCAGCCGGCTGAGTGC
65 CAGCACACAGGGGGACCGCACCGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAACGC
* * * * *
15897992 CCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGCGTTCATTCCATGT
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGT
15898043 GTAAACCCCA
Statistics
Matches: 462, Mismatches: 70, Indels: 53
0.79 0.12 0.09
Matches are distributed among these distances:
182 3 0.01
183 177 0.38
184 119 0.26
185 1 0.00
187 1 0.00
188 3 0.01
189 1 0.00
190 3 0.01
192 1 0.00
194 2 0.00
195 61 0.13
196 86 0.19
197 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGATAACAGGATCGAC
AGCACACAGGGGGACCGCACCGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAA
Found at i:15897874 original size:26 final size:26
Alignment explanation
Indices: 15897838--15897890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15897828 GTTGACTTAG
15897838 GCATACGAAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCACT-CCCAGTCTAA
*
15897864 GCATACGAAGTTCACTTCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
15897890 G
1 G
15897891 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:15897887 original size:196 final size:195
Alignment explanation
Indices: 15897539--15897910 Score: 491
Period size: 196 Copynumber: 1.9 Consensus size: 195
15897529 GTTGTCGTAA
* * * *
15897539 CAGGATCGACAGCACGCAGGGGCGACCGCACTGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCC
1 CAGGATCGACAGCACACAGGGGCGACCGCACCGATCTCCGGCTAGCGCATTCTGCCTCTCCGGCC
* * * * * **
15897604 GGCTGAACGTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATCCTGAGTTCATTCCTTGTCTAAG
66 GGCTGAACGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAG
* * *
15897669 CATACGGAGTTGATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCAGGACCAGCAG
131 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAG
* * * *
15897734 CAGGATCGATAGCACACAGGAGG-GACCG-AGCCGATCTCTGGCTAGCGTATTCTGCCTCTTCGG
1 CAGGATCGACAGCACACAGG-GGCGACCGCA-CCGATCTCCGGCTAGCGCATTCTGCCTCTCCGG
*
15897797 CCGGCTGACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCAGTC
64 CCGGCTGAACG-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTG-AGTTCATCCCCAGTC
*
15897861 TAAGCATACGAAGTTCACTT-CCAGTCTAAGATCGGACCGGACCGAGGGTT
127 TAAGCATACGAAGTTCA-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
15897911 GCGATAGCAA
Statistics
Matches: 152, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
194 1 0.01
195 61 0.40
196 88 0.58
197 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (195 bp):
CAGGATCGACAGCACACAGGGGCGACCGCACCGATCTCCGGCTAGCGCATTCTGCCTCTCCGGCC
GGCTGAACGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAG
CATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAG
Found at i:15898154 original size:159 final size:157
Alignment explanation
Indices: 15897896--15898194 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 157
15897886 CTAAGATCGG
* *
15897896 ACCGGACCGAGGGTTGCGATAGCAAGATCGACAGCACGCAGGGGAACCGAACCGATCCCCGGCTT
1 ACCGGACCGAGGGTTGCGACAGCAAGACCGACAGCACGCAGGGGAACCGAACCGATCCCCGGCTT
* * ** * *
15897961 ATGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATA
66 ACGCATTATGCCTCTCCAGCCGGCTGAGCACCCGCACGCCCATTTCATAGGTTGACTTAGGCATA
* *
15898026 GGGCGTTCATTCCATGTGTAAACCCCA
131 CGGAGTTCATTCCATGTGTAAACCCCA
* * ** * * *
15898053 ACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCTGAGGGGGATCGGACCGATCCCCAGG
1 ACCGGACCGAGGGTTGCGACAGCAAGACCGACAGCACGC--AGGGGAACCGAACCGATCCCC-GG
* * * *
15898118 -TTGCGCATTATGCCTCTCC-GACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
63 CTTACGCATTATGCCTCTCCAG-CCGGCTGAGCACCCGCACGCCCATTTCATAGGTTGACTTAGG
15898181 CATACGGAGTTCAT
127 CATACGGAGTTCAT
15898195 CCCTAGTCTA
Statistics
Matches: 117, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 33 0.28
158 1 0.01
159 81 0.69
160 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (157 bp):
ACCGGACCGAGGGTTGCGACAGCAAGACCGACAGCACGCAGGGGAACCGAACCGATCCCCGGCTT
ACGCATTATGCCTCTCCAGCCGGCTGAGCACCCGCACGCCCATTTCATAGGTTGACTTAGGCATA
CGGAGTTCATTCCATGTGTAAACCCCA
Found at i:15898216 original size:26 final size:26
Alignment explanation
Indices: 15898180--15898232 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15898170 GTTGACTTAG
15898180 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15898206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15898232 G
1 G
15898233 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15898378 original size:184 final size:184
Alignment explanation
Indices: 15898055--15898391 Score: 428
Period size: 184 Copynumber: 1.8 Consensus size: 184
15898045 AAACCCCAAC
* * * *
15898055 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCTGAGGGGGATCGGACCGATCCCCAGGTT
1 CGGACAGAGGGTTGTGGCAGCAGGACCGACAGCACGC-GAGGGGGATCGGACCAATCCCCAGCTT
* * * *
15898120 GCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
65 GCGCATTATGCCTCTCCGACCGGCTGAGCACCCACACGCCCATTTCATGGATTGACTTAGGCATA
15898185 CGGAGTTCATCCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
130 CGGAGTTCATCCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * * *
15898240 CGGACAGAGGGTTGTGGCAGTAGGATCGGCATCACGC-AGGTGGGATCGGGCCAATCCCCAGCTT
1 CGGACAGAGGGTTGTGGCAGCAGGACCGACAGCACGCGAGG-GGGATCGGACCAATCCCCAGCTT
* * * * * *
15898304 GCGCATTTTGCCTCTCCGACCGGCTGAGCGCCTACACGCCCGTTTCATGGATTGTCTTATGCATA
65 GCGCATTATGCCTCTCCGACCGGCTGAGCACCCACACGCCCATTTCATGGATTGACTTAGGCATA
* *
15898369 -GATAGTTCATTCCATGTCTAAGC
130 CG-GAGTTCATCCCATGTCTAAGC
15898392 CCCAGTCGGA
Statistics
Matches: 128, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
183 4 0.03
184 92 0.72
185 32 0.25
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
CGGACAGAGGGTTGTGGCAGCAGGACCGACAGCACGCGAGGGGGATCGGACCAATCCCCAGCTTG
CGCATTATGCCTCTCCGACCGGCTGAGCACCCACACGCCCATTTCATGGATTGACTTAGGCATAC
GGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
Found at i:15898504 original size:343 final size:342
Alignment explanation
Indices: 15897786--15898549 Score: 980
Period size: 343 Copynumber: 2.2 Consensus size: 342
15897776 TAGCGTATTC
* *
15897786 TGCCTCTTCGGCCGGCTGACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
1 TGCCTCTTCGACCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * *
15897851 ATCCCCAGTCTAAGCATACGAAGTTCACTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGAT
66 ATCCCTAGTCTAAGCATACGAAGTTCACTTCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGAC
* * *
15897916 AGCAAGATCGACAGCACGCAGGGGAACCGAACCGATCCCCGGCTTATGCATTCTGCCTCTCCAGC
131 AGCAAGATCGACAGCACGCAGGGGAACCGAACCAATCCCCAGCTTACGCATTCTGCCTCTCCAGC
* * * * *
15897981 CGGCTGAGTGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGCGTTCATTCCATGTGTA
196 CGGCTGAGCGCCCACACGCCCGTTTCATAGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTA
* * * * *
15898046 AACCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCTGAGGGGGATCGGACCGAT
261 AACCCCAACCGGACCGAGGGTTGGGGCAGCAGGACAGACAGCACACAGAGGGGGATCGGACCGAT
*
15898111 CCCCAGGTTGCGCATTA
326 CCCCAGGTTGCACATTA
* * * *
15898128 TGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTTCGACCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * * *
15898193 ATCCCTAGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGTGG
66 ATCCCTAGTCTAAGCATACGAAGTTCACTT-CCAGTCTAAGATCGGACCGGACAGAGGGTTGCGA
* * * * * * ** * *
15898257 CAGTAGGATCGGCATCACGCAGGTGGGATCGGGCCAATCCCCAGCTTGCGCATTTTGCCTCTCC-
130 CAGCAAGATCGACAGCACGCAGG-GGAACCGAACCAATCCCCAGCTTACGCATTCTGCCTCTCCA
* * * *
15898321 GACCGGCTGAGCGCCTACACGCCCGTTTCAT-GGATTGTCTTATGCATAGATAGTTCATTCCATG
194 G-CCGGCTGAGCGCCCACACGCCCGTTTCATAGG-TTGGCTTAGGCATAGAGAGTTCATTCCATG
* ** *
15898385 TCTAAGCCCCAGTCGGACCGAGGGTTGGGGCAGCAGGACA-AGCAGCACACAGAGGGGGATCGGG
257 TCTAAACCCCAACCGGACCGAGGGTTGGGGCAGCAGGACAGA-CAGCACACAGAGGGGGATCGGA
15898449 CCGATCCCC-GGCTTGCACATTA
321 CCGATCCCCAGG-TTGCACATTA
* * * * *
15898471 TGCCTCTTCGATCGGCTTAACGCCCGTACGCTCATTTTGTGGGTTGACTTATGCATACGAAGTTC
1 TGCCTCTTCGACCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
*
15898536 ATTCCTAGTCTAAG
66 ATCCCTAGTCTAAG
15898550 ATCAGATCGG
Statistics
Matches: 362, Mismatches: 54, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
341 2 0.01
342 139 0.38
343 221 0.61
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (342 bp):
TGCCTCTTCGACCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
ATCCCTAGTCTAAGCATACGAAGTTCACTTCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGAC
AGCAAGATCGACAGCACGCAGGGGAACCGAACCAATCCCCAGCTTACGCATTCTGCCTCTCCAGC
CGGCTGAGCGCCCACACGCCCGTTTCATAGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTA
AACCCCAACCGGACCGAGGGTTGGGGCAGCAGGACAGACAGCACACAGAGGGGGATCGGACCGAT
CCCCAGGTTGCACATTA
Found at i:15898684 original size:157 final size:156
Alignment explanation
Indices: 15898206--15898704 Score: 536
Period size: 159 Copynumber: 3.2 Consensus size: 156
15898196 CCTAGTCTAA
* * * * *
15898206 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGAAGTTCATT-CCAGTCTAAGATCAGATCGGACAGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
15898271 TCACGCAGGTGGGATCGGGCCAATCCCCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCC
65 GCACACAGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCC
* * * * *
15898336 TACACGCCCGTTTCATGGATTGTCTTAT
129 CACACGCTCGTTTCGTGGGTTGACTTAT
** * * *
15898364 GCATA-GATAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGGGGCAGCAGGA-CAA
1 GCATACGA-AGTTCATTCCA-GTCTAAG-ATCAGATCGGACAGAGGGTTGCGGCAGCAGGATCGA
* * *
15898426 GCAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGATCGGCTTAA
63 -CAGCACAC--AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAG
** * *
15898491 CGCCCGTACGCTCATTTTGTGGGTTGACTTAT
125 CGCCCACACGCTCGTTTCGTGGGTTGACTTAT
* *
15898523 GCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATTGACA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGATCGGACAGAGGGTTGCGGCAGCAGGATCGACA
* * * *
15898588 GCACACAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCC
65 GCACACAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCC
* *
15898653 ACACGCTCGTTTCGTGGGTTGGCTTAG
130 ACACGCTCGTTTCGTGGGTTGACTTAT
* *
15898680 GCATACGGAGTTCAATCCATGTCTA
1 GCATACGAAGTTCATTCCA-GTCTA
15898705 CACATACGGA
Statistics
Matches: 281, Mismatches: 49, Indels: 23
0.80 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 99 0.35
158 52 0.19
159 122 0.43
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGATCGGACAGAGGGTTGCGGCAGCAGGATCGACAG
CACACAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCCA
CACGCTCGTTTCGTGGGTTGACTTAT
Found at i:15899641 original size:26 final size:26
Alignment explanation
Indices: 15899612--15899664 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15899602 GTAGGCTTAG
15899612 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15899638 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15899664 G
1 G
15899665 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15899994 original size:159 final size:159
Alignment explanation
Indices: 15899705--15899995 Score: 406
Period size: 159 Copynumber: 1.8 Consensus size: 159
15899695 GACCAACAGT
*** * * *
15899705 AGGATCGACAGCACATATGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTTTGCCTCTCCGACT
1 AGGATCGACAGCACATAAAAGGAGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGACC
* * * *
15899770 GGCTGAGCACCCGTATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
15899835 GCCCCAGCCGAACCTAGGGTTGTGGCAGC
131 GCCCCAGCCGAACCTAGGGTTGTGGCAGC
* * *
15899864 AGGATCGACAGCACGTAAAAGGAGATCGGG-CTGATCCTCGGCTTGCGCATTATGCCTCTCTGGC
1 AGGATCGACAGCACATAAAAGGAGATCGGGTC-GATCCTCGGCTTGCGCATTATGCCTCTCCGAC
* **
15899928 CGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
65 CGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCT
15899992 AAGC
129 AAGC
15899996 ATACGGAGTT
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
158 1 0.01
159 110 0.96
160 3 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
AGGATCGACAGCACATAAAAGGAGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGACC
GGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCCCCAGCCGAACCTAGGGTTGTGGCAGC
Found at i:15899998 original size:26 final size:26
Alignment explanation
Indices: 15899968--15900020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15899958 GTTGACTTAG
*
15899968 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15899994 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15900020 G
1 G
15900021 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15900251 original size:343 final size:346
Alignment explanation
Indices: 15899420--15900337 Score: 908
Period size: 343 Copynumber: 2.6 Consensus size: 346
15899410 CGACTGGTTC
* ** **
15899420 AGCACCCGTACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCA-GTCTAAG-TT
1 AGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
** * * * * * * * * *
15899483 TGGACTGGACCGAAGGTTGCGACATCAGGATCAACAACACGCAG-GGGGGACCGGGCCGATCCCC
65 CAG-CCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGG-CGATCCCC
* * * * * * * * *
15899547 GGCTTACGCATTCTGCCTCCCCGACCGGTTGAGCGCCCGTACGCTTGTTTCGTGGGTAGGCTTAG
128 GGCTTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
* * * *
15899612 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGAC
193 GCATACGGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGAC
* * * *
15899677 TGAGGGTTACGGTAGCAGGACCAACAGTAGGATCGACAGCACATATGGGGGGATCGGGTCGATCC
257 CGAGGGTTACGGTAGCAGG----A-AGT---ATCGACAGCACACATGGGGCGATCGGCTCGATCC
* * * * **
15899742 TCGGCTTGCGCATTTTGCCTCTCCGACTGGCTG
314 CCAGCTTACGCATTCTGCCTCTCCGACCAGCTG
*
15899775 AGCACCCGTATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * * * * * *
15899840 AGCCGAACCTAGGGTTGTGGCAGCAGGATCGACAGCACGTAAAAGGAGATCGGGCTGATCCTCGG
66 AGCCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGC-GATCCCCGG
*
15899905 CTTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGC
130 CTTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGC
15899970 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAA-CTGGACC
195 ATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAATC-GGACC
** * *
15900034 GAGGGTTGTGGTAGCAGG-A-T-T-GACTGCACGCA-GGGGCGATCGGCTCGATCCCCAGCTTAC
258 GAGGGTTACGGTAGCAGGAAGTATCGACAGCACACATGGGGCGATCGGCTCGATCCCCAGCTTAC
*
15900094 GCATTCTGCCTCTCCGGCCAGCTG
323 GCATTCTGCCTCTCCGACCAGCTG
* * * *
15900118 AGCGCCCGTACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
1 AGCACCCGTACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * *
15900182 CAGTCGGATCGAGGGTTGTGGCAGC-GAGACCCG-CAGCACGCAGAGGGGGACCGGGTCGATCCC
65 CAGCCGAACCGAGGGTTGTGGCAGCAG-GA-CCGACAGCACGCAGAGGGGGACCGGG-CGATCCC
* * * * * * *
15900245 CGGCTTGCGCATTATGCCT-TATCAGCTGACTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTT
127 CGGCTTGCGCATTATGCCTCTCT-GGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTT
** * *
15900309 ATACATATGGAGTGCATTCCCAGTCTAAG
191 AGGCATACGGAGTTCA-TCCCAGTCTAAG
15900338 ATCGGACTGG
Statistics
Matches: 471, Mismatches: 80, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
342 4 0.01
343 221 0.47
344 12 0.03
345 1 0.00
349 1 0.00
350 1 0.00
354 3 0.01
355 84 0.18
356 141 0.30
357 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (346 bp):
AGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGCCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCGATCCCCGGC
TTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAAATCGGACCGAG
GGTTACGGTAGCAGGAAGTATCGACAGCACACATGGGGCGATCGGCTCGATCCCCAGCTTACGCA
TTCTGCCTCTCCGACCAGCTG
Found at i:15900547 original size:26 final size:26
Alignment explanation
Indices: 15900469--15900538 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
15900459 GTTGGCTTAG
15900469 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15900495 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15900521 GCATACGAAGTTCATTCC
1 GCATACGGAGTTCATTCC
15900539 CAATCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15901924 original size:184 final size:184
Alignment explanation
Indices: 15901464--15901949 Score: 519
Period size: 180 Copynumber: 2.7 Consensus size: 184
15901454 CGGGACCAGT
* * *
15901464 AGAATGCT-GGGGGGACCAGGCCGATCCCCAGCTT-GCGCATTCTGCCTCTCTGGCCGACTGAGC
1 AGAATG-TAGGGGGGACCAGGCCGATCCCCGGCTTAGCGCATTCTGCCTCTCTGACCGGCTGAGC
* * * * *
15901527 GCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGGA-TTCATT-CCATGTCTCAGCATAC
65 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCCATATCTAAGCATAC
* ** * *
15901590 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGTAGGACCA
129 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGACAA
* * * ** * **
15901646 A-CA-GCAGGGGGGATCAGATCGATCCCCGGC-TAGTGCATTCTGCCTCT-TCGACTAGCTGAGC
1 AGAATGTAGGGGGGACCAGGCCGATCCCCGGCTTAGCGCATTCTGCCTCTCT-GACCGGCTGAGC
* * *
15901707 GCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGCATACA
65 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCATACA
* * *
15901771 GAGTTCATTCCCAGTTTAAGATCTA-ACTAGACCAAGGGTTGCGGCAGCAGGATCGAA
130 GAGTTCATTCCCAGTCTAAGATC-AGACCAGACCAAGGGTTACGGCAGCAGGA-C-AA
* * * *
15901828 AGAATGTAGGGGGGACCGGGCCGATCCTCGGCTTAG-GCATTCTGCCTCTCTGACCGGCTAACCG
1 AGAATGTAGGGGGGACCAGGCCGATCCCCGGCTTAGCGCATTCTGCCTCTCTGACCGGCTGAGCG
* * * *
15901892 CCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGC
66 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGC
15901950 CCCAGCTTGA
Statistics
Matches: 246, Mismatches: 45, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
179 5 0.02
180 134 0.54
181 6 0.02
182 3 0.01
183 4 0.02
184 90 0.37
185 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
AGAATGTAGGGGGGACCAGGCCGATCCCCGGCTTAGCGCATTCTGCCTCTCTGACCGGCTGAGCG
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGACAA
Found at i:15903253 original size:158 final size:158
Alignment explanation
Indices: 15902833--15903253 Score: 405
Period size: 158 Copynumber: 2.7 Consensus size: 158
15902823 CTAAGGATAT
* * * * * * *
15902833 AGAGTTCATTCCCAGTCTAACATCGGACCGGATCAAGGGTTGCGGTAGCAGGATCGGTAGCACGA
1 AGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
* * * * * *
15902898 AAGGGGGATCGAGCTGATCCCTGGCTTACGTATTCTGCCTCTTCGGCCAGCTGAGCGCTCGCACA
66 AGGGGGGATCGAGCTGATCCCTGGCTTACGTATTATGCCTCTCCGGCCAGCTCAGCGCCCGAACA
* * * *
15902963 CCCGTTTCGTGGGTTGCCTTAGGCATAG
131 CCCATTTCATGGGTTGACTTAGGCATAC
* * * ** * * * * *
15902991 GGAGTTCATT-CAATGTCAAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGACAGCAC
1 AGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGCAC
* * * * ** *
15903054 GCAGAGGGGATCGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGGCCTGCTCAGCGCCCGAA
64 GCAGGGGGGATCGAGCTGATCCCTGGCTTACGTATTATGCCTCTCCGGCCAGCTCAGCGCCCGAA
** *
15903119 TGCTCATTTCATGGGTTGACTTAGGCATAC
129 CACCCATTTCATGGGTTGACTTAGGCATAC
* * *
15903149 AGAGTTCATTCCCAGTCTTAGATCAGACCGGATCGAGGGTTATGGCAGTAGGATCGATAGCACGC
1 AGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
* * * * *
15903214 AGGGGGGACCGAGTTGGTCCCCGGCTTACGTATTTTGCCT
66 AGGGGGGATCGAGCTGATCCCTGGCTTACGTATTATGCCT
15903254 TTTCGATCGA
Statistics
Matches: 198, Mismatches: 61, Indels: 8
0.74 0.23 0.03
Matches are distributed among these distances:
157 5 0.03
158 189 0.95
159 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
AGGGGGGATCGAGCTGATCCCTGGCTTACGTATTATGCCTCTCCGGCCAGCTCAGCGCCCGAACA
CCCATTTCATGGGTTGACTTAGGCATAC
Found at i:15903535 original size:26 final size:26
Alignment explanation
Indices: 15903505--15903560 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
15903495 TAGGTTGACT
15903505 TAAGCATAC-GAGGTTCA-TCCTTAGTC
1 TAAGCATACGGA-GTTCATTCC-TAGTC
*
15903531 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCTAGTC
15903557 TAAG
1 TAAG
15903561 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCTAGTC
Found at i:15903900 original size:159 final size:158
Alignment explanation
Indices: 15903589--15904036 Score: 364
Period size: 159 Copynumber: 2.8 Consensus size: 158
15903579 TTGCGGTAGC
* * * * * * * *
15903589 AGGATCGGCAGCACACAGGGTGGATCGGGCCGATCCCTGACTTGCGCATTCTGTCTCTTCGGTCG
1 AGGATTGGCAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCG
* ** * * *
15903654 GCTGAGCGCCCGCATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GCTCAGCGCCCGCATGCCCATTTTGTGGGTTAACTTAAGCATACGGAGTTCATCCCATGTCTAAG
* ** *
15903719 CCCCAGCCGGACCGAGGGTTGTGGCAAT
131 CCCCAGCCAGACCGAGCATTGTGACAAT
* * * *
15903747 GGGTTTGGCAGCACGCAGAGGGGGATCGGGTAGATCCCCGACTTGTGCATTATGCCTCTCCGGTC
1 AGGATTGGCAGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTC
* * *
15903812 GGCTCAGCTCCCGCACT-CTCGTTTTGTGGGTTAACTTAAGCATACGGAGTTCAATCCCA-GTCT
65 GGCTCAGCGCCCGCA-TGCCCATTTTGTGGGTTAACTTAAGCATACGGAGTTC-ATCCCATGTCT
** * * *
15903875 AAG-ATCGGATCAGACCGAGCATTGTGACAGT
128 AAGCCCCAG-CCAGACCGAGCATTGTGACAAT
* * * * * * *
15903906 AGGATTGACAGCATGCAGTGGGGATCGGGTCGGTCCCC-AGCTTATGCATTCTGCCTTTCCGGCC
1 AGGATTGGCAGCACGCAGGGGGGATCGGGTCGATCCCCGA-CTTGTGCATTCTGCCTCTCCGGTC
* ** * * * * ** ** * * *
15903970 GACTTTGTGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAA
65 GGCTCAGCGCCCGCATGCCCATTTTGTGGGTTAACTTAAGCATACGGAGTTCATCCCATGTCTAA
15904035 GC
130 GC
15904037 ATACGGAGTT
Statistics
Matches: 228, Mismatches: 54, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 98 0.43
159 117 0.51
160 6 0.03
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (158 bp):
AGGATTGGCAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCG
GCTCAGCGCCCGCATGCCCATTTTGTGGGTTAACTTAAGCATACGGAGTTCATCCCATGTCTAAG
CCCCAGCCAGACCGAGCATTGTGACAAT
Found at i:15904039 original size:26 final size:26
Alignment explanation
Indices: 15904009--15904061 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15903999 GTTGGCTTAG
15904009 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
15904035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15904061 G
1 G
15904062 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15904594 original size:882 final size:867
Alignment explanation
Indices: 15903445--15905495 Score: 2265
Period size: 882 Copynumber: 2.3 Consensus size: 867
15903435 GCGTATTCTG
* * * * * *
15903445 CCTCTCCGACCAGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATAGGTTGACTTAAGC
1 CCTCT-CGACCGGCCTCTCCGGCCGGCTGAACGCCCACACGCTCATTTCATGGGTTGACTTAAGC
* * * *
15903510 ATACGAGGTTCATCCTTAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCG
65 ATACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCG
** * * * *
15903575 AGGGTTGCGGTAGCAGGATCGGCAGCACACAGGGTGGATCGGGCCGATCC-CTGACTTGCGCATT
130 AGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCTC-GACTTGCGCATT
* * *
15903639 CTGTCTCT-TCGGTCGGCTGAGCGCCCGCATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGT
194 CTGCCTCTCT-GGCCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * ** * * * *
15903703 TCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAATGGGTTTGGCAGCACGCAGAGG
258 TCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGA
* * ** * * * **
15903768 GGGATCGGGTAGATCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTCAGCTCCCGCAC-TCTC
323 GGGACCGGGCAGATCCCCGACTTACGCATTATGCCTCCCCGATCGGCTCAGCACCCAAACGT-TC
* * *
15903832 GTTTTGTGGGTTAACTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCGGATCAG-ACCGAGCA
387 ATTTCGTGGGTTAACTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAGA-CAGCACCGAG--
* ** * ** * * *
15903896 TTGTGACAGT-AGGATTGACAGCATGCAGTGGGGA-TCG-GGTCGGTCCCCAGCTTATGCATTCT
449 -GGTGACAGTAAGGATCAACAACACACAGGGGGGACT-GAGCT-GGTCCCCAGCATATGCATTCT
** * * * * *
15903958 GCCTTTCCGGCC-GACTTTGTGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTC
511 GCCTTTCCGGCCTG-CTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTC
* *
15904022 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCAAC
575 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTACAAC
* * *
15904087 AGCAAGACCAGTAGCAAGATC-AGCAGTACGCAAGGAGGGATCGGGCCGATCCCCAGCTTACCCA
640 AGCAAGACCAGTAACAAGATCGA-CAGCACGCAAGGAGGGACCGGGCCGATCCCCAGCTTACCCA
*
15904151 TTCTACCTCTCTGG-TCGGCTGAGCACCCGCACGCTCCTTTCTTGGGTTGGCTTAGGCATACGGA
704 TTCTACCTCTCTGGCT-GGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGA
* * * * *
15904215 GTTCATTCCATGTCTAAGCCCTAGTCAGA-TCGAGGGTTCTAGTAGTAGGACCGACAGCGGGATC
768 GTTCATTCCATGTCTAAGCCCCAGCCAGACT-AAAGG---T--T-GT--G---G-CAGCAGGATC
*
15904279 GACAGCACGTAGAAGGGGACCGAGCTGATCCCCGACTTACACATTATG
820 GACAGCACGTAGAAGGGGACCGAGCTGATCCCCGACTTACACATTATA
* * * * *
15904327 CCTCTCTGACCGGCTTCTCCGGCCGGTTGAATGCCCACGCGCTCATTTCATGGGTTGACTTAGGC
1 CCTCTC-GACCGGCCTCTCCGGCCGGCTGAACGCCCACACGCTCATTTCATGGGTTGACTTAAGC
* * *
15904392 AAACAAAGTTCATCCCCT-GTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAAACCGGACC
65 ATACGAAGTTCAT-CCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACC
* *
15904456 GAGGGTTGTC-GTAGCAGGATCGATAGCACGTAGGGGGGACCGAGCCGATCCTCGACTTACGCAT
129 GAGGGTTG-CGGTAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCAT
* ** * * * ** * * *
15904520 TTTGCCTCTCTGGCCGATTTAGTGCCCACACACCCGTTTCGTTGGTTGGCTTAGGCATAAGGAGT
193 TCTGCCTCTCTGGCCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * * * *
15904585 TCATTCCATGTCTAAGCCCCAGTAGGATTGAAGGCTGTGGCAACAGGATCGGTAGCACACAGAGA
258 TCATTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGA
* * *
15904650 GGGACCGGGCCGATCCCTGACTTACGCATTATGCCTCCCCGATCGGTTCAGCACCCAAACGTTCA
323 GGGACCGGGCAGATCCCCGACTTACGCATTATGCCTCCCCGATCGGCTCAGCACCCAAACGTTCA
* * * * * * * *
15904715 TTTCGTGGGTTGAGTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGCACTGAGGGTT
388 TTTCGTGGGTTAACTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAGACAGCACCGAGGGTG
* * *
15904780 ACAGTAGCAGGATCAACAACACACAGGGGGGACTGAGCTGGTCCTCGGCATGTGCATTCTGCCTT
453 ACAGTA--AGGATCAACAACACACAGGGGGGACTGAGCTGGTCCCCAGCATATGCATTCTGCCTT
* *
15904845 TCCGGCCTGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCT
516 TCCGGCCTGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCA
* * * ** *** *
15904910 TGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGATCGGTTCGAGGGTTACGGTAGCAGG
581 TGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTACAACAGCAAG
* * *** * * *
15904975 ACCAGTAACAGGATCGACAGCACGCAAGGGGGGACCGGGCCGATCCGTGGCTTACGCATTTTGCC
646 ACCAGTAACAAGATCGACAGCACGCAAGGAGGGACCGGGCCGATCCCCAGCTTACCCATTCTACC
** * * *
15905040 TCTCTGGCTGGCTGAGTGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
711 TCTCTGGCTGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* **
15905105 CATGTCTAAGCCCCAGCCGGACTAAAGGTTGTGGCAGCAGGATCGACAGCACGTAGTGGGGGACC
776 CATGTCTAAGCCCCAGCCAGACTAAAGGTTGTGGCAGCAGGATCGACAGCACGTAGAAGGGGACC
* * * * * *
15905170 GGGTTGATCCTCGGCTTGCGCATTATA
841 GAGCTGATCCCCGACTTACACATTATA
** * * * *
15905197 CCTCTCGGTCGGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCA
1 CCTCTCGACCGGCCTCTCCGGCCGGCTGAACGCCCACACGCTCATTTCATGGGTTGACTTAAGCA
* * * ** *
15905262 TACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGA
66 TACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCGA
* * * * *
15905327 GGGTTGCGGCAGTAGGATCGATAGGACGCAGGGGGGACCGAACCGATCCTCGACTTGCACATTCT
131 GGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCT
* * ** *
15905392 GCCTCTCCGACCGGCTGAGCATCCGCATGCCCTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
196 GCCTCTCTGGCCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
*
15905457 TTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCA
261 TTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCA
15905496 GCGAGACCGG
Statistics
Matches: 964, Mismatches: 187, Indels: 49
0.80 0.16 0.04
Matches are distributed among these distances:
868 5 0.01
869 239 0.25
870 54 0.06
871 1 0.00
874 1 0.00
876 2 0.00
877 1 0.00
879 8 0.01
881 3 0.00
882 636 0.66
883 14 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (867 bp):
CCTCTCGACCGGCCTCTCCGGCCGGCTGAACGCCCACACGCTCATTTCATGGGTTGACTTAAGCA
TACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCGA
GGGTTGCGGTAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCT
GCCTCTCTGGCCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGGCAACAGGATCGGCAGCACACAGAGAGGG
ACCGGGCAGATCCCCGACTTACGCATTATGCCTCCCCGATCGGCTCAGCACCCAAACGTTCATTT
CGTGGGTTAACTTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAGACAGCACCGAGGGTGACA
GTAAGGATCAACAACACACAGGGGGGACTGAGCTGGTCCCCAGCATATGCATTCTGCCTTTCCGG
CCTGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAATCGAGGGTTACAACAGCAAGACCAG
TAACAAGATCGACAGCACGCAAGGAGGGACCGGGCCGATCCCCAGCTTACCCATTCTACCTCTCT
GGCTGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGCCAGACTAAAGGTTGTGGCAGCAGGATCGACAGCACGTAGAAGGGGACCGAGCT
GATCCCCGACTTACACATTATA
Found at i:15904941 original size:26 final size:26
Alignment explanation
Indices: 15904891--15904943 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15904881 GTTGGCTTAG
**
15904891 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
*
15904917 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
15904943 G
1 G
15904944 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:15905286 original size:26 final size:26
Alignment explanation
Indices: 15905256--15905311 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
15905246 TGGGTTGACT
15905256 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
15905282 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15905308 TAAG
1 TAAG
15905312 ATCAGACTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15905775 original size:11 final size:11
Alignment explanation
Indices: 15905759--15905791 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15905749 ACCCAGGGCA
15905759 CATCGTCGGAG
1 CATCGTCGGAG
15905770 CATCGTCGGAG
1 CATCGTCGGAG
*
15905781 CATCGCCGGAG
1 CATCGTCGGAG
15905792 AGCCTAACAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15906405 original size:26 final size:26
Alignment explanation
Indices: 15906368--15906420 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15906358 GTTGACTTAG
*
15906368 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15906394 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15906420 G
1 G
15906421 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15906688 original size:158 final size:158
Alignment explanation
Indices: 15906429--15906895 Score: 514
Period size: 158 Copynumber: 3.0 Consensus size: 158
15906419 AGATTGGACT
* * * * *
15906429 GGACCGAGGGTTACGGCAGTAGGATCGACAGCATGCAG-GCGGGATCGGGCCGATCCCCGACTTA
1 GGACTGAGGGTTACAGCAGCAGGACCGACAGCATGCAGAGGGGGATCGGGCCGATCCCCGACTTA
* * * *
15906493 CGCATTTTGCCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAG
66 CGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATAC
15906558 GGAGTTCATTCCATGTCTAAGCCCTAG-TC
130 GGAGTTCATTCCATGTCTAAGCCC-AGTTC
*** * * * *
15906587 GGACTGAGGGTTGTGGCAGCGGGACCTG-CAGCATGCAGAGGGGGA-CCGGCCGATCCCTGGCTT
1 GGACTGAGGGTTACAGCAGCAGGACC-GACAGCATGCAGAGGGGGATCGGGCCGATCCCCGACTT
* * * ** * *
15906650 GCGCATTATGCCTCTCCGACCGGCTCAGTGCCCACACGCTTGTTTCATGGGTTGACTTAGGCATA
65 ACGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTG-CTTAGGCATA
* ** *
15906715 CAGAGTTCATTCCCA-GTCTAAGATCGGTTC
129 CGGAGTTCATT-CCATGTCTAAGCCCAGTTC
* * * * *
15906745 GGACTGAGGGTTACAGCAGTAGGATCGACAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTA
1 GGACTGAGGGTTACAGCAGCAGGACCGACAGCATGCAGAGGGGGATCGGGCCGATCCCCGACTTA
* **
15906810 CGCATTCTGCCTCT-CGGCTAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
66 CGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATAC
*
15906874 GGAGTTCATTCCTTGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
15906896 ATACGGAGTT
Statistics
Matches: 250, Mismatches: 50, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 208 0.83
159 37 0.15
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GGACTGAGGGTTACAGCAGCAGGACCGACAGCATGCAGAGGGGGATCGGGCCGATCCCCGACTTA
CGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCAGTTC
Found at i:15906898 original size:26 final size:26
Alignment explanation
Indices: 15906868--15906920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15906858 GTTGGCTTAG
**
15906868 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15906894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15906920 G
1 G
15906921 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15907192 original size:171 final size:171
Alignment explanation
Indices: 15906894--15907264 Score: 412
Period size: 171 Copynumber: 2.2 Consensus size: 171
15906884 CCTTGTCTAA
* *
15906894 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTTGCGACAGCAGGACTAGC
1 GCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCGGACCGAGGGTTGCGACAGCAGGACTAGC
* * * * *
15906958 AGCAGGATCGATAGCACGCACGGGGGGACCGGATCGATCCCTGGCTTACGAATTCTCCCTCTCCG
65 AGCAGGATCGACAGCACGCACGAGGGGACCGGATCGATCCCAGGCTTACGAATTATCCCTCTCCA
* * *
15907023 A-CTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGG-GTTAG
130 ATC-GACTGAGCGCCCGCACGCACATTTCATGGG-TGGACTTAG
* * * * *
15907065 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTAGGACTGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCGGACCGAGGGTTGCGACAGCAGGACTAGC
* * * * * *
15907129 AGCGGGATCGACAGCACGCA-GAAGGGGATCGG-GCTGATCCCAGGCTTGCGCATTATGCCTCTC
65 AGCAGGATCGACAGCACGCACG-AGGGGACCGGATC-GATCCCAGGCTTACGAATTATCCCTCTC
* * *
15907192 CAATCGACTGAGCGCCTGCACGCACGTTTCGTGGGTGGACTTAG
128 CAATCGACTGAGCGCCCGCACGCACATTTCATGGGTGGACTTAG
*
15907236 GCATACGGAGTTCATCCCCAGTCTAAGCA
1 GCATACGGAGTTCAT-TCCAGTCTAAGCA
15907265 TATGGAGTTC
Statistics
Matches: 167, Mismatches: 26, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
170 8 0.05
171 153 0.92
172 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCAGTCTAAGCACCAGACCGGACCGAGGGTTGCGACAGCAGGACTAGCA
GCAGGATCGACAGCACGCACGAGGGGACCGGATCGATCCCAGGCTTACGAATTATCCCTCTCCAA
TCGACTGAGCGCCCGCACGCACATTTCATGGGTGGACTTAG
Found at i:15907272 original size:26 final size:26
Alignment explanation
Indices: 15907236--15907288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15907226 GTGGACTTAG
15907236 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15907262 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15907288 G
1 G
15907289 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15907421 original size:354 final size:360
Alignment explanation
Indices: 15906766--15907473 Score: 882
Period size: 354 Copynumber: 2.0 Consensus size: 360
15906756 TACAGCAGTA
* * * * ***
15906766 GGATCGACAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCGGCTAG
1 GGATCGACAGCACGCAGAAGGGGATCGGGTCGATCCCAGACTTACGCATTATGCCTCTCCAATAG
* * **
15906831 CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGC
66 CTGAGCACCCGCACGCACGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* *
15906896 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGACTAGCAGC
131 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT----CAGCA-GACTA--AGC
* * * * * *
15906961 AGGATCGATAGCACGCACGGGGGGACCGGATCGATCCCTGGCTTACGAATTCTCCCTCTCCGACT
189 AGGATCGACAGCACACACGGGGGGACCAGACCGATCCCAGGCTTACGAATTCTACCTCTCCGACT
*
15907026 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGGTTAGGCATACGGAGTTCATTCCATGTCTAA
254 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15907091 GCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACTGGCAGCG
319 GCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACTGGCAGCG
* * *
15907133 GGATCGACAGCACGCAGAAGGGGATCGGG-CTGATCCCAGGCTTGCGCATTATGCCTCTCCAATC
1 GGATCGACAGCACGCAGAAGGGGATCGGGTC-GATCCCAGACTTACGCATTATGCCTCTCCAATA
* * *
15907197 GACTGAGCGCCTGCACGCACGTTTCGTGGG-TGGACTTAGGCATACGGAGTTCATCCCCAGTCTA
65 G-CTGAGCACCCGCACGCACGTTTCATGGGTTGG-CTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
15907261 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGATC-AACCGAGGGTT-A-C-GA-T-AGTAGGA
128 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCAGCAGACTAAGCAGGA
* * * * *
15907320 TCGACAGCACACA-TGGGGGATCAGCCCGATCCCCAGG-TTACGCATTCTACCTCTCC-AGTTGG
193 TCGACAGCACACACGGGGGGACCAGACCGAT-CCCAGGCTTACGAATTCTACCTCTCCGA-CTGG
* *
15907382 CTGAGCGCCCGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
256 CTGAGCGCCCGCACGCT-CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
*
15907446 CCCCAGCTGGACCGAGGGTTGTGGCAGT
320 CCCCAGCCGGACCGAGGGTTGTGGCAGT
15907474 GACAGCACAC
Statistics
Matches: 298, Mismatches: 37, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
353 2 0.01
354 118 0.40
355 22 0.07
358 1 0.00
359 2 0.01
361 1 0.00
362 1 0.00
366 1 0.00
367 66 0.22
368 84 0.28
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (360 bp):
GGATCGACAGCACGCAGAAGGGGATCGGGTCGATCCCAGACTTACGCATTATGCCTCTCCAATAG
CTGAGCACCCGCACGCACGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTCAGCAGACTAAGCAGGATCG
ACAGCACACACGGGGGGACCAGACCGATCCCAGGCTTACGAATTCTACCTCTCCGACTGGCTGAG
CGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
CCGGACCGAGGGTTGTGGCAGTAGGACTGGCAGCG
Found at i:15908379 original size:26 final size:26
Alignment explanation
Indices: 15908350--15908402 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15908340 GTTGACTTAG
* *
15908350 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15908376 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15908402 G
1 G
15908403 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15908716 original size:158 final size:156
Alignment explanation
Indices: 15908376--15908868 Score: 425
Period size: 158 Copynumber: 3.1 Consensus size: 156
15908366 CCCAGTCTAA
* *
15908376 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACGAGGGTTGTGGCAGTAGGATCGGCAG
1 GCATACGGAGTTCATT-CCAATCTAAGACCAAACCGGACGAGGGTTGTGGCAGCAGGATCGGCAG
* * * * * *
15908441 CACGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTCAGCGCCC
65 CACGCAGAGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCC
* * *
15908506 GTACGCCCGTTTTGTGGGTTGGCTTAG
130 GCACGCCCGTTTCGTGGGTTGACTTAG
* * * * * *
15908533 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA-GGTTGTGGCAGCGGGA-CTGGC
1 GCATACGGAGTTCATTCCA-ATCTAAGACCAAACCGGA-CGAGGGTTGTGGCAGCAGGATC-GGC
* * * * *
15908596 AGTACGTAGAAGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCG
63 AGCACGCAG-AGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
**
15908661 CCCGCACGCTTGTTTCGTGGGTTGACTTAG
127 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* ** * ** * **
15908691 GCATACGGAGTTCATTGCCAATCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATT-CCAATCTAAGACCAAACCGGA-CGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * **** * * * *
15908756 GCACACAGGGGGGGATCAGG-TCGGTCCCCGACTCATACATTTTGCCTCTCCGGCCGGCTGAGCT
64 GCACGCA-GAGGGGA-CCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
* * * * *
15908820 CCCGCACGCTCATTTCATCGGTTGGCTTAG
127 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
15908850 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
15908869 TGTCTAAGCA
Statistics
Matches: 267, Mismatches: 60, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 52 0.19
158 107 0.40
159 99 0.37
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAATCTAAGACCAAACCGGACGAGGGTTGTGGCAGCAGGATCGGCAGC
ACGCAGAGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCG
CACGCCCGTTTCGTGGGTTGACTTAG
Found at i:15908880 original size:26 final size:26
Alignment explanation
Indices: 15908850--15908902 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15908840 GTTGGCTTAG
* *
15908850 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
15908876 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15908902 G
1 G
15908903 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15909046 original size:184 final size:184
Alignment explanation
Indices: 15908691--15909060 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 184
15908681 GTTGACTTAG
* * * * ** *
15908691 GCATACGGAGTTCATTGCCAATCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGATA
1 GCATACAGAATTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACA
* * * * * *
15908756 GCACACAGGGGGGGATCAGGTCGGTCCCCGACTCATACATTTTGCCTCTCCGGCCGGCTGAGCTC
66 GCACACAGGGGGGGAGCAGGCCGATCCCCGACTCATACATTCTGCCTCTCCGGCCAGCTGAGCGC
*
15908821 CCGCACGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACGCCCATTT-ATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
15908876 GCATACAGAATTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGCAGGATCGGC
1 GCATACAGAATTCATTCCCAATCTAAGATCAGATC-GGACCGAGGGTTACGACAGCAGGATCGAC
** * ** * *
15908940 AGCACACA-GGGGGGAGCAGGCCGATCCTTGGCTTGTGCATTCTGCCTCTCCGGTCAGCTGAGCG
65 AGCACACAGGGGGGGAGCAGGCCGATCCCCGACTCATACATTCTGCCTCTCCGGCCAGCTGAGCG
* * *
15909004 CCCGCATGCCCGTTT-TGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCCGCACGCCCATTTAT-C-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15909060 G
1 G
15909061 ACCTAGTCGG
Statistics
Matches: 155, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 1 0.01
183 1 0.01
184 93 0.60
185 60 0.39
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACAGAATTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACA
GCACACAGGGGGGGAGCAGGCCGATCCCCGACTCATACATTCTGCCTCTCCGGCCAGCTGAGCGC
CCGCACGCCCATTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15909380 original size:26 final size:26
Alignment explanation
Indices: 15909350--15909402 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15909340 GTTGGCTTTG
15909350 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15909376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15909402 G
1 G
15909403 ATAGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15909757 original size:26 final size:26
Alignment explanation
Indices: 15909728--15909780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15909718 GTTGACTTAG
15909728 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15909754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15909780 G
1 G
15909781 ATCGGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15910218 original size:158 final size:156
Alignment explanation
Indices: 15909754--15910255 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 156
15909744 CCCAGTCTAA
* * *
15909754 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATTGAACCAAAGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-TGGACCAAGGGTTGCGGCAGC-GGATCGAC
* * * * * * * *
15909818 AGCACGTATG-GGGGATCGGGTCGATCCCCGCCTTGCGCATTCTGCCACTCTGGCCGGTTGGGTG
63 AGCACGCA-GAGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCG
* *
15909882 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * ** * * * *
15909912 GCATAGGGAGTTTGTTCGATGTCTAAGCGCCAGCTAGACCAAGGGTTGTGGCAGCGAGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATGGACCAAGGGTTGCGGCAGCG-GATCGACA
* * * *
15909977 GCACGCAGAGGGGGACCGGGCCGATCCCCT-GCTTGCGCATTATGCCTCTTTGGCCGGCTCAGCG
64 GCACGCAGA-GGGGACCGGGTCGAT-CCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCG
* * *
15910041 CCCGCACGCTTGTTTCGTGGGTTGACTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
15910071 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCGGCACCTGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAT-GGACCAAGGGTTGCGGCAGC-GGATCGAC
* * ** *
15910135 AGCACGCAGAGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGC
63 AGCACGCAGAGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGC
*
15910200 CCGCACGCTCGTTGCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
15910229 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15910256 CATACGGAGT
Statistics
Matches: 276, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 11 0.04
158 143 0.52
159 116 0.42
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATGGACCAAGGGTTGCGGCAGCGGATCGACAGC
ACGCAGAGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15910279 original size:26 final size:26
Alignment explanation
Indices: 15910229--15910281 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15910219 GTTGGCTTAG
*
15910229 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15910255 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15910281 G
1 G
15910282 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15916902 original size:26 final size:26
Alignment explanation
Indices: 15916865--15916916 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15916855 GTTGACTTAG
*
15916865 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
15916891 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
15916917 TATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15917371 original size:158 final size:158
Alignment explanation
Indices: 15916891--15917382 Score: 499
Period size: 158 Copynumber: 3.1 Consensus size: 158
15916881 CCCAATCTAA
* * *
15916891 GCATACGAAGTTCATTCCCAGTCTAATATCAGATCGGACAGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGATA
** * * * * * *
15916956 GCACGCAGGACGGACCGGGCCAATCCCCGGCTTGCGCAATCTACCTCTCCGACCGATTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGACTGAGTGCC
15917021 CGCACGC-CTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * * * *
15917049 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCAGGACCTG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACAGAGGGTTGCGGCAGCAGGATC-G
* * * * * * *
15917112 -TAGCACGTAAAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCCCCAACCGGCTCAG
63 ATAGCACG-CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGACTGAG
* * *
15917176 TGCCCACACGTTCGTTTCGTGGGTTGACTT-G
127 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * **
15917207 GGATACGGACTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAACAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGATA
* * * * * **
15917272 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCTCATTTTGCGTCTCCAATCGACTGAGCCCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGACTGAGTGCC
*
15917337 CGCACGCTCGTTTTGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
15917365 GCATACGAAGTTCATTCC
1 GCATACGAAGTTCATTCC
15917383 ATGTTTAAGC
Statistics
Matches: 261, Mismatches: 64, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 74 0.28
158 113 0.43
159 73 0.28
160 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGACTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15917417 original size:26 final size:26
Alignment explanation
Indices: 15917365--15917417 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15917355 GTTGGCTTAG
*
15917365 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
15917391 GCATAC-AGAGTTCATTCCCA-GTCTAA
1 GCATACGA-AGTTCATT-CCATGTCTAA
15917417 G
1 G
15917418 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:15917666 original size:26 final size:26
Alignment explanation
Indices: 15917614--15917666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15917604 GTTGACTTAG
*
15917614 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCAAATCTAA
* *
15917640 GCATACGAAGTTCATTCCAAATTTAA
1 GCATACGAAGTTCATCCCAAATCTAA
15917666 G
1 G
15917667 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAATCTAA
Found at i:15917992 original size:26 final size:26
Alignment explanation
Indices: 15917956--15918008 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15917946 GTTGGCTTAG
*
15917956 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15917982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15918008 G
1 G
15918009 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15918721 original size:26 final size:26
Alignment explanation
Indices: 15918682--15918734 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15918672 GTTGACTTAG
*
15918682 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
15918708 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
15918734 G
1 G
15918735 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:15919017 original size:159 final size:158
Alignment explanation
Indices: 15918847--15919210 Score: 382
Period size: 158 Copynumber: 2.3 Consensus size: 158
15918837 CGTACAGCCG
* * *
15918847 TTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGT
** * *
15918911 TGTGGCAGC-GAGA-CTGACAGCACGTAGAAAGGGACCAGGCCGATCCCCAACTTGCGCATTATG
66 TGCAGCAGCAG-GATC-AACAGCACGCAG-AAGGGACCAGGCCGATCCCCAACTTGCGCATTATG
*
15918974 CATCT-CTGACCAGCTC-AGCGCCCGCACGCTCA
128 CATCTCCAG-CC-GC-CAAGCGCCCGCACGCTCA
* * * * * *
15919006 TTTCGTGGGTTGACTTAAGCATACGAAGTTCATTACCA-GTCTAAG-ATCGGACCGGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGG
* * ** * ** * *
15919069 TTGCAGTAGCAGGATCAACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCC
65 TTGCAGCAGCAGGATCAACAGCACGCAGAAGGGACCAGGCCGATCCCCAACTTGCGCATTATGCA
* *
15919134 TCTCCAGCCGCCAGAGCGCCTGCACGCTCG
130 TCTCCAGCCGCCA-AGCGCCCGCACGCTCA
15919164 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15919211 TACGGAGTTC
Statistics
Matches: 168, Mismatches: 28, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
156 1 0.01
157 5 0.03
158 89 0.53
159 68 0.40
160 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGT
TGCAGCAGCAGGATCAACAGCACGCAGAAGGGACCAGGCCGATCCCCAACTTGCGCATTATGCAT
CTCCAGCCGCCAAGCGCCCGCACGCTCA
Found at i:15919218 original size:26 final size:26
Alignment explanation
Indices: 15919182--15919234 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15919172 GTTGGCTTAG
15919182 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15919208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15919234 G
1 G
15919235 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15919576 original size:26 final size:26
Alignment explanation
Indices: 15919546--15919598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15919536 TTTGACTTAG
15919546 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15919572 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15919598 G
1 G
15919599 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Done.