Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 130 of 402
Found at i:15920084 original size:27 final size:26
Alignment explanation
Indices: 15920046--15920099 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
15920036 GTTGGCTTAG
* *
15920046 GCATACGGAGTTCATTCCCATGTCTAA
1 GCATACGGAGTTCACTACCA-GTCTAA
*
15920073 GCATATGGAGTTCACTACCAGTCTAA
1 GCATACGGAGTTCACTACCAGTCTAA
15920099 G
1 G
15920100 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTACCAGTCTAA
Found at i:15920954 original size:356 final size:360
Alignment explanation
Indices: 15920137--15921020 Score: 980
Period size: 356 Copynumber: 2.4 Consensus size: 360
15920127 TAAGACTAGT
* * * * * **
15920137 AGCAGGATCGATAGCACGCAGGGAGGGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCAGGCA-GGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * **
15920202 ATCGGCTGAGCTCCCGCACGCTCGTTTCAAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 GTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
15920267 TAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCAGGACCGGTAACAGGATTAGCAGCATGCAGAGA
130 TAAGCCCTAGCCAGATCGAGGGTTGTGGCAACAGGACCGATAACAGGATGAGCAGCATGCAGAGA
* * * *
15920332 GGGACTGGGCTGATCCTTGGCTTGCGTATTATACCTCTCCGGCCGACCTCTTTGGTCGGTTGAGC
195 GGGACCGGGCTGATCCTCGGCTTGCGCATTATACATCT-C--CCGA---C-TTGGTCGG-TGAGC
* * *
15920397 ACCAGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGAAGTTCATCCCCAATCTAAGCATACGG
252 ACCAGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGG
15920462 AGTTCATTCCCAGTCTAAGATCGGTCCAAATCGAGGGCTACGAC
317 AGTTCATTCCCAGTCTAAGATCGGTCCAAATCGAGGGCTACGAC
* * * * *
15920506 AGCAGGATTGACAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
1 AGCAGGATCGACAGCAGGCAGGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* ** *
15920571 TAGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
66 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * *
15920636 AAGCCTTAGCCGGATCGACGGGTTGTGGCAACAGGACCGATAGCGGGATCGA-CAGCATGCAGAG
131 AAGCCCTAGCCAGATCGA-GGGTTGTGGCAACAGGACCGATAACAGGAT-GAGCAGCATGCAGAG
* * * *
15920700 AGGGACCGGGTTGATCCTCGGCTTGCGCATTATGCATCT-CCGA-TTGG-C--TGGGCGTCC-GC
194 AGGGACCGGGCTGATCCTCGGCTTGCGCATTATACATCTCCCGACTTGGTCGGTGAGC-ACCAGC
* * * * ** * * *
15920759 ACATTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATCCGTAGTCTAAGCATATGGATTTCA
258 ACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCA
* ** * *
15920824 TTCTC-GATCTAAGATCGGAT-CGGATCGAGGGTTGCGAC
323 TTCCCAG-TCTAAGATCGG-TCCAAATCGAGGGCTACGAC
* * * *
15920862 AGCAGGATCGGCAGCAGGCAGGAGGGACCGAGCC-AGTCCCCGGCTTACGCATTTTGCCTTTCCG
1 AGCAGGATCGACAGCAGGCAGGAGGGACCGAGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * *
15920926 GTCGGTTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTGT
65 GTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-TGT
* * *
15920991 CTAAGCCCCAGCCA-ACCAAGGGTTGTGGCA
129 CTAAGCCCTAGCCAGATCGAGGGTTGTGGCA
15921021 GCGGGACTTG
Statistics
Matches: 440, Mismatches: 68, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
355 13 0.03
356 197 0.45
357 17 0.04
359 1 0.00
360 4 0.01
365 4 0.01
368 115 0.26
369 88 0.20
370 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (360 bp):
AGCAGGATCGACAGCAGGCAGGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCTAGCCAGATCGAGGGTTGTGGCAACAGGACCGATAACAGGATGAGCAGCATGCAGAGAG
GGACCGGGCTGATCCTCGGCTTGCGCATTATACATCTCCCGACTTGGTCGGTGAGCACCAGCACA
CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGTCCAAATCGAGGGCTACGAC
Found at i:15921313 original size:26 final size:26
Alignment explanation
Indices: 15921284--15921336 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15921274 GGTTGACTTG
15921284 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15921310 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15921336 G
1 G
15921337 ATCGGGTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15922191 original size:26 final size:26
Alignment explanation
Indices: 15922155--15922207 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15922145 GTTTGCTTAG
15922155 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15922181 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15922207 G
1 G
15922208 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15922483 original size:869 final size:868
Alignment explanation
Indices: 15920582--15922484 Score: 2025
Period size: 869 Copynumber: 2.2 Consensus size: 868
15920572 AGGCTGAGTG
** * **
15920582 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCTTAGC
1 CCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCCAGC
* * * * *
15920646 CGGATCGACGGGTTGTGGCAACAGGACCGATAGCGGGATCGACAGCATGCAGAGAGGGACCGGGT
65 CGGACCGA-GGGTTGTGGCAGCAGGACTGGTAGCGGGATCGACAGCATGCAGAGGGGGACCGGGT
* * *** * ** * * *
15920711 TGATCCTCGGCTTGCGCATTATGCATCTCCGATTGGCTGGGCGTCCGCACATTCGTTTCATGGGT
129 TGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCACACACTCATTTCATGGGT
** * * * *
15920776 TGACTTAGGCGTACGGAGTTCATCCGTAGTCTAAGCATATGGATTTCATTCTCGATCTAAGATCG
194 TGACTTAGGCGTACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTAGATCTAAGATCG
* * * * * * *
15920841 GATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCAGGCAGGAGGGACCGAGCCAGTCCCCGGC
259 GATCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAAGAGGCACCGAGCCAGTCCCCGGC
* * * * * *
15920906 TTACGCATTTTGCCTTTCCGGTCGGTTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCA
324 TTACGCATTCTGCCTCTCCGCTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
* * *
15920971 TAGGGAGTTCATTCCATTGTCTAAGCCCCAGCCAACCAAGGGTTGTGGCAGCGGGACTTGCAGCA
389 TAGGGAGTTCATTCCATTGTCTAAGCCCCAGCCAACCAAGGGTTGTGGCAGCAGGACTCGAAGCA
* * ** * *
15921036 CGGAAAGGGGGACCGGGTCGATCCTCGCCTTACGCATTATGCCTCTTCGACCCACTCAGTGCCCA
454 CGCAAAGGGGGACCAGACCGATCCCCGCCTTACGCATGATGCCTCTTCGACCCACTCAGTGCCCA
* * * * * *
15921101 CACGCTCGTTTCATGGGCTGACTTATGCATACGGAGTTCATTCCCAAAGTAAGATTGGATCGGAC
519 CACACTCGTTTCATGGGCTGACTTATGCATACGAAGTTCATTCCCAAACTAAGATCGGACCAGAC
* * * * *
15921166 CAAAGGTTGCGGTAGCAGGATTGACAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTACGCAT
584 CAAAGGTTCCGATAGCAGGATTGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTACACAT
* * *
15921231 TTTGCCTCTCCGGGCGGCTGAACGCCCGCACGCTTTTTTCATGGGTTGACTTGGCATACGGAGTT
649 TCTGCCTCTCCGGGCGGCTGAACGCCCGCACGATTGTTTCATGGGTTGACTTGGCATACGGAGTT
* * * *
15921296 CATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGGTCAGATAGAGGGTTGTGG
714 CATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGTGA
* * * * * * *
15921361 CAGTAGGACCAGCAACAGGATCGATAGCATGGAAAAAGGGACCGGGCTGATCCTCGGCTTGCGCA
779 CAGTAGGACCAGCAACAGGATAGATAGCATGCAAAAAGGGACCGGCCAGATCCCCAGCTTACGCA
*
15921426 TTCTGCCTTTTCGGTCGACGGAGCA
844 TTCTGCCTTTTCGGCCGACGGAGCA
* * * * ** * *
15921451 CCCGTACGCTCA-TTTCAGGGGTTGGCTCAGGCATACGGTGTTCATTCCATATCTAAGCCCCAAC
1 CCCGCACGC-AAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * *
15921515 CGGACTGAGGGTTGTGGTAGCA-GAATCGGTAGCAGGATCGACAGCACGCAGAGGGGGATCGGGT
65 CGGACCGAGGGTTGTGGCAGCAGGACT-GGTAGCGGGATCGACAGCATGCAGAGGGGGACCGGGT
* * *
15921579 TGATCCTCGACTTGCAG-ATTATGCCTCTTCGGCCGGCTGAGCACCCACACGCTCATTTCGTGGG
129 TGATCCTCGACTTGC-GCATTATGCCTCTCCGGCCGGCTGAGCACCCACACACTCATTTCATGGG
15921643 TTGACTT-GG-GTA-GATGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTTAG-TCTAA
193 TTGACTTAGGCGTACG--G-AGTTCATCCCCAATCTAAGCATACGGAGTTCATTC-TAGATCTAA
** * * * *
15921704 GATCGG-TCCAGACCAAGGGTTGCGGGAGCAGGATCGACAGCACGTAAGAGGCATCG-GGCTGAT
254 GATCGGAT-CAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAAGAGGCACCGAGCCAG-T
* ** *
15921767 CCTCGGCTTGTGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGG
317 CCCCGGCTTACGCATTCTGCCTCTCCG-CTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGG
** *
15921831 CTTAGGCATAGGGAGTTCATTCCA-TGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAAGG
381 CTTAGGCATAGGGAGTTCATTCCATTGTCTAAGCCCCAGC-CAACCAAGGGTTGTGGCAGC-AGG
* * * ** *
15921895 AC-CGAAAGCATGCAGAGGGGGACCAGACCGATCCCCGTCTTGGGCATGATGCCTCTTC-AGCCG
444 ACTCG-AAGCACGCAAAGGGGGACCAGACCGATCCCCGCCTTACGCATGATGCCTCTTCGA-CCC
* * * * ***
15921958 GCTCAGCT-CCCGCACACTCGTTTCGTGGGTTGACTTATGCATACGAAAGTTCATTCCCTGTCTA
507 ACTCAG-TGCCCACACACTCGTTTCATGGGCTGACTTATGCATACG-AAGTTCATTCCCAAACTA
* * * * *
15922022 AGATC-GAGCCAGACCGAGGGTTCCGATAGTAGGATTGACAGCATGCAGGGGGGACCGGGTTGAT
570 AGATCGGA-CCAGACCAAAGGTTCCGATAGCAGGATTGACAGCACGCAGGGGGGACCGGGTCGAT
** * * * * *
15922086 CC-CTGACTTGTACATTCTGCCTCTGCGGTCGGCTGAGCGTCCGCAC-ATTCGTTTCGTGGGTTT
634 CCTC-GACTTACACATTCTGCCTCTCCGGGCGGCTGAACGCCCGCACGATT-GTTTCATGGG-TT
15922149 G-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
696 GACTT-GGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
* * ** * * ** *
15922213 ATCAGACCGA-GGTTGTGACGGTAGGACCAGCAGTAGGATAGGTAGCAT-CCAGGAGGGATCGAG
760 ATCAGACAGAGGGTTGTGACAGTAGGACCAGCAACAGGATAGATAGCATGCAAAAAGGGACCG-G
* * * *
15922276 CCAG-TCCCCAGCTTATGTATTTTGCCTCTTT-GGCCGACTGAGCA
824 CCAGATCCCCAGCTTACGCATTCTGCCT-TTTCGGCCGACGGAGCA
*
15922320 CCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCT
1 CCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC
* * ** * * *
15922385 GGACCGAGGGTTGTGGCAGTAGGACTGGCAGCGGGATCGGTAGCATGCAAAGGGGGACCGGGCTA
66 GGACCGAGGGTTGTGGCAGCAGGACTGGTAGCGGGATCGACAGCATGCAGAGGGGGACCGGGTTG
* ** *
15922450 ATCCCCGTTTTACGCATTATGCCTCTCCGGCCGGC
131 ATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGC
15922485 CTCTCCGACC
Statistics
Matches: 838, Mismatches: 169, Indels: 54
0.79 0.16 0.05
Matches are distributed among these distances:
865 1 0.00
866 3 0.00
867 24 0.03
868 275 0.33
869 316 0.38
870 151 0.18
871 68 0.08
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (868 bp):
CCCGCACGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC
GGACCGAGGGTTGTGGCAGCAGGACTGGTAGCGGGATCGACAGCATGCAGAGGGGGACCGGGTTG
ATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCACACACTCATTTCATGGGTTG
ACTTAGGCGTACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTAGATCTAAGATCGGA
TCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAAGAGGCACCGAGCCAGTCCCCGGCTT
ACGCATTCTGCCTCTCCGCTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATTGTCTAAGCCCCAGCCAACCAAGGGTTGTGGCAGCAGGACTCGAAGCACG
CAAAGGGGGACCAGACCGATCCCCGCCTTACGCATGATGCCTCTTCGACCCACTCAGTGCCCACA
CACTCGTTTCATGGGCTGACTTATGCATACGAAGTTCATTCCCAAACTAAGATCGGACCAGACCA
AAGGTTCCGATAGCAGGATTGACAGCACGCAGGGGGGACCGGGTCGATCCTCGACTTACACATTC
TGCCTCTCCGGGCGGCTGAACGCCCGCACGATTGTTTCATGGGTTGACTTGGCATACGGAGTTCA
TTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGGGTTGTGACA
GTAGGACCAGCAACAGGATAGATAGCATGCAAAAAGGGACCGGCCAGATCCCCAGCTTACGCATT
CTGCCTTTTCGGCCGACGGAGCA
Found at i:15924618 original size:26 final size:26
Alignment explanation
Indices: 15924588--15924640 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15924578 GTTGACTTAG
15924588 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15924614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15924640 G
1 G
15924641 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15924913 original size:158 final size:158
Alignment explanation
Indices: 15924751--15925116 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 158
15924741 CCCGCATGTC
* * * * *
15924751 TGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCG-TCGGATCGAGGG
1 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGATCGAGGG
*** * * * *
15924815 TTGTGGTAGCGGGACCGATAGCACACAGAGGGGGA-TCGAGCCA-ATCCCTGGCTTGCGCATTAT
66 TTACAGTAGCAGGACCGACAGCACACAG-GGGAGACT-GAGCCAGATCCC-GACTTGCGCATTAT
*
15924878 GCCTCTTCGACCGACTCA-ATGCCTGCACGCT
128 GCCTCTTCGACCGACTCAGAT-CCCGCACGCT
* * * **
15924909 TGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCAGATCGAGG
1 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCAGATCGAGG
* ** * * *
15924973 GTTACAGTAGCAGGATCGACAGCACGTAGGGGAGACTGGGCCAGTTCCCGACTTGCGCATTCTGC
65 GTTACAGTAGCAGGACCGACAGCACACAGGGGAGACTGAGCCAGATCCCGACTTGCGCATTATGC
* * * *
15925038 CTCTTCGATCGACTGAGCTCCCGTACGCT
130 CTCTTCGACCGACTCAGATCCCGCACGCT
*
15925067 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATTGTCTTAAGC
1 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-TGTC-TAAGC
15925117 ATATGGAGTT
Statistics
Matches: 167, Mismatches: 33, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.01
158 122 0.73
159 39 0.23
160 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (158 bp):
TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGATCGAGGG
TTACAGTAGCAGGACCGACAGCACACAGGGGAGACTGAGCCAGATCCCGACTTGCGCATTATGCC
TCTTCGACCGACTCAGATCCCGCACGCT
Found at i:15925857 original size:26 final size:26
Alignment explanation
Indices: 15925828--15925877 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15925818 GTTGACTTAG
15925828 GCATACGGAGTTCACCCCCAGTCTCA
1 GCATACGGAGTTCACCCCCAGTCTCA
**
15925854 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCACCCCCAGTCT
15925878 AAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTCA
Found at i:15926226 original size:26 final size:26
Alignment explanation
Indices: 15926195--15926247 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15926185 GTTGACTTAG
*
15926195 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
15926221 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
15926247 G
1 G
15926248 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:15926927 original size:26 final size:26
Alignment explanation
Indices: 15926890--15926942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15926880 GTCGACTTAG
*
15926890 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAAAGTTCATACCCAGTCTAA
*
15926916 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATACCCAGTCTAA
15926942 G
1 G
15926943 ATTGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATACCCAGTCTAA
Found at i:15926935 original size:196 final size:196
Alignment explanation
Indices: 15926601--15926966 Score: 493
Period size: 196 Copynumber: 1.9 Consensus size: 196
15926591 AAAATCAATA
* * * **
15926601 GCACGTAGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTACCTCTTCGGTCGGCTGAACACC
1 GCACGTAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAATCGGCTGAACACC
* * * * *
15926666 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
66 CGCACGCTCGTTTCGTGGGTCGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAAAGT
* *
15926731 TCATTCCCAGTCTTAGATCGGACCAGACCGAGGCTTGCGATAGCAGCACTAGCAGCAGGATCGTC
131 TCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGATAGCAGCACTAGCAGCAGGATCGTC
15926796 T
196 T
* * * * * * *
15926797 GCACGTAGGAGGGACCGGGTCGATCCCCGGCTTGCGTATTTTGCTTCTCCAATCGGCTTAAC-CC
1 GCACGTAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAATCGGCTGAACACC
*
15926861 TCGCACGCTTGTTTCGTGGGTCGACTTAGGCATACAGAGTTCATACCCA-GTCTAAGCATACAAA
66 -CGCACGCTCGTTTCGTGGGTCGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATACAAA
* * *
15926925 GTTCATTCCCAGTCTAAGATTGAATCAGACCGAGGGTTGCGA
129 GTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGA
15926967 CAAAAGGATC
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
195 2 0.01
196 140 0.97
197 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (196 bp):
GCACGTAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAATCGGCTGAACACC
CGCACGCTCGTTTCGTGGGTCGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAAAGT
TCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGATAGCAGCACTAGCAGCAGGATCGTC
T
Found at i:15927263 original size:26 final size:26
Alignment explanation
Indices: 15927233--15927285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15927223 GTTGGCTTAG
*
15927233 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15927259 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15927285 G
1 G
15927286 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15927986 original size:26 final size:26
Alignment explanation
Indices: 15927956--15928008 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15927946 GTTGACTTAG
*
15927956 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
* * *
15927982 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
15928008 G
1 G
15928009 ATGGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:15928348 original size:26 final size:26
Alignment explanation
Indices: 15928298--15928350 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15928288 GTTGGCTTAG
* *
15928298 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
15928324 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15928350 G
1 G
15928351 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15929061 original size:26 final size:26
Alignment explanation
Indices: 15929025--15929077 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15929015 GTTGACTTAG
15929025 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15929051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15929077 G
1 G
15929078 ATTGGGTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15929343 original size:159 final size:160
Alignment explanation
Indices: 15929108--15929554 Score: 510
Period size: 159 Copynumber: 2.8 Consensus size: 160
15929098 GCGACAGTAG
* * ***
15929108 GATCGACAGCCCGCA-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGG
1 GATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGG
*
15929172 CTGAGCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 CTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * ** *
15929236 CCCCAG-TCAGACCGTGGGTTGTGGCAGCGA
130 CACCAGACCAGACCGAGGGTTACGGCAGCAA
* * * * * *
15929266 GATCGGCAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTGGCACATTATGCCTCTCCGGTCGA
1 GATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGG
* * * * * *
15929331 CTCAACGTCCGCACACTCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCACA-GTCTAA-
66 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAG
* *** * *
15929394 AATTGGACCGGACCGAGGGTTACGGTAGCAA
130 CACCAGACCAGACCGAGGGTTACGGCAGCAA
** * *
15929425 GATCGACAGCACGCAG-GGGGGACCGAACCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGG
1 GATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGG
* *
15929489 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGC
66 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15929554 A
131 A
15929555 TACGGCGTTC
Statistics
Matches: 234, Mismatches: 49, Indels: 11
0.80 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 105 0.45
159 124 0.53
160 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (160 bp):
GATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGG
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGACCAGACCGAGGGTTACGGCAGCAA
Found at i:15929525 original size:158 final size:156
Alignment explanation
Indices: 15929051--15929544 Score: 524
Period size: 158 Copynumber: 3.1 Consensus size: 156
15929041 CCCAGTCTAA
* * * * * * *
15929051 GCATACGGAGTTCATTCCCAGTCTAAGATTGGGTTGGACTGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAAATTGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * ***
15929116 GCCCGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAACCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
15929181 CGCACGC-CTGTTTCGTGGGTTGGCTTAG
129 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ***** * * * * *
15929209 GCATAGGGAGTTCATTCCATGTCT-AAGCCCCAGTCAGACCGTGGGTTGTGGCAGCGAGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAAATTGGA-TCGGACCGAGGGTTGCGGCAGCAAGATCGAC
* * * * * * *
15929273 AGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTGGCACATTATGCCTCTCCGGTCGACTCAACG
64 AGCACGCAG-GGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
15929338 TCCGCACACTCGTTTCGTGGGTTGACTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15929368 TCATACGGAGTTCATTCACAGTCTAAAATTGGACCGGACCGAGGGTTACGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAAATTGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACA
** *
15929433 GCACGCAGGGGGGACCGAACCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
15929498 CGCACGCTCATTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
15929526 GCATACGGAGTTCATTCCA
1 GCATACGGAGTTCATTCCA
15929545 TGTATAAGCA
Statistics
Matches: 265, Mismatches: 64, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 6 0.02
158 133 0.50
159 119 0.45
160 7 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAAATTGGATCGGACCGAGGGTTGCGGCAGCAAGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15930299 original size:26 final size:26
Alignment explanation
Indices: 15930248--15930300 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15930238 GTTGACTTAG
*
15930248 GCATACAGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAACCTAA
* *
15930274 GCATATAGAGTTCAAT-CCCAATCTAA
1 GCATACAGAGTTC-ATCCCCAACCTAA
15930300 G
1 G
15930301 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAACCTAA
Found at i:15930620 original size:26 final size:26
Alignment explanation
Indices: 15930590--15930642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15930580 GTTGACTTAG
15930590 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15930616 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15930642 G
1 G
15930643 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15936245 original size:26 final size:26
Alignment explanation
Indices: 15936216--15936278 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
15936206 GTTGACTTAG
15936216 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTTTAA
15936242 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTTTAA
15936268 GCATACGGAGT
1 GCATACGGAGT
15936279 CAATTCCCAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTTTAA
Found at i:15936809 original size:158 final size:157
Alignment explanation
Indices: 15936299--15936809 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 157
15936289 TCCAAGATTA
* * * * * * * * *
15936299 GATCGGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAAGAGGGACCAGGCCAATCC-CCAG
1 GATCGAACCGAGGGTTGTGGCAGCAGGACCAACAGCATGC-AGGGGGACCGGGCTAATCCTCGA-
* * * *
15936363 CTTGCACATTCTACCTCTCTGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTATAC
64 CTTGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTATGC
* * *
15936428 ATAAGGAGTTCATTTCATGTCTAAGCCCC
129 ATAAGAAGTTCATTCCATATCTAAGCCCC
* * * * * * *
15936457 -AGTCGGATCAAGGGTTGTGGCAGC-GAGACCAACAGTATGCAGAGAGCGACCGGG-TCGATTCT
1 GA-TCGAACCGAGGGTTGTGGCAGCAG-GACCAACAGCATGCAG-G-GGGACCGGGCT-AATCCT
* * * * * * * * * *
15936519 TGGCTTGCGCATTATGCCTCT-TCGATCGGCTCAGTGCCCGTACGCTTGTTTCATGGGTTGACTT
61 CGACTTGCACATTCTGCCTCTCT-GACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* ** *
15936583 ATGCATACGAAGTTCATTCCCA-ATCTAAGATCA
125 ATGCATAAGAAGTTCATT-CCATATCTAAGCCCC
* * * *
15936616 GA-CCAGACCGAGGG-TGATGGTAGCAGAATCAACAGCATGCACGGGGGACCGGGCTAATCCTCG
1 GATCGA-ACCGAGGGTTG-TGGCAGCAGGACCAACAGCATGCA-GGGGGACCGGGCTAATCCTCG
* *
15936679 ACTTGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
63 ACTTGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTATG
* * *
15936744 CATATGAAGTTCATTCCATTTGTAAGCCCC
128 CATAAGAAGTTCATTCCATATCTAAGCCCC
* *
15936774 GATCGAACCGAGGGCTGTGGCAGCAGGACCGACAGC
1 GATCGAACCGAGGGTTGTGGCAGCAGGACCAACAGC
15936810 GGGATCGGTA
Statistics
Matches: 266, Mismatches: 69, Indels: 36
0.72 0.19 0.10
Matches are distributed among these distances:
157 7 0.03
158 143 0.54
159 111 0.42
160 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GATCGAACCGAGGGTTGTGGCAGCAGGACCAACAGCATGCAGGGGGACCGGGCTAATCCTCGACT
TGCACATTCTGCCTCTCTGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCAT
AAGAAGTTCATTCCATATCTAAGCCCC
Found at i:15936950 original size:26 final size:26
Alignment explanation
Indices: 15936914--15936966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15936904 GTTGACATAG
15936914 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
**
15936940 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
15936966 G
1 G
15936967 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:15938126 original size:158 final size:159
Alignment explanation
Indices: 15937950--15938345 Score: 431
Period size: 158 Copynumber: 2.5 Consensus size: 159
15937940 CCGCACGCCT
* * *
15937950 ATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGTACCGAGGGT
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
* * * **
15938015 TGTGGCAGTAGGACCCG-CAGCAAGCAGAGGGGGATCGGGTCGATCCCCG-GTTGTGCATTATGC
66 TGTGGCAGTAGGACCCGACAGCAAGCAG-GGGGGACCGGGTCAATCCCCGACTTACGCATTATGC
** *
15938078 CTCTCCGGTTGGCTCAATGCCCGAACGCTC
130 CTCTCCGGCCGACTCAATGCCCGAACGCTC
* * * ** ** * *
15938108 ATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCAAGTG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGATCATT-CCATGTCTAAGCCCCAACCGGACCGAGGG
* * * * * *
15938172 TTGCGACAGTAAGA-TCGACAGCACGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTCTGC
65 TTGTGGCAGTAGGACCCGACAGCAAGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTATGC
* ** * * *
15938236 CTTTTTGGCCGACTGAGTGCCCGCACGCTC
130 CTCTCCGGCCGACTCAATGCCCGAACGCTC
*
15938266 ATTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAATCGGACCGAGGGT
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
* *
15938331 TATGGCAGCAGGACC
66 TGTGGCAGTAGGACC
15938346 AACAGTGGGA
Statistics
Matches: 186, Mismatches: 47, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
157 24 0.13
158 159 0.85
159 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
ATTTCGTGGGTTGGCTTAGGCATACGGAGATCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
TGTGGCAGTAGGACCCGACAGCAAGCAGGGGGGACCGGGTCAATCCCCGACTTACGCATTATGCC
TCTCCGGCCGACTCAATGCCCGAACGCTC
Found at i:15938486 original size:26 final size:26
Alignment explanation
Indices: 15938456--15938508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15938446 GTTGACTTAG
*
15938456 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15938482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15938508 G
1 G
15938509 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15938992 original size:26 final size:26
Alignment explanation
Indices: 15938955--15939007 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15938945 CTTGGCTTAG
*
15938955 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGAAGTTAATTCCCA-GTCTAA
*
15938981 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
15939007 G
1 G
15939008 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:15939544 original size:682 final size:682
Alignment explanation
Indices: 15938482--15939752 Score: 1632
Period size: 682 Copynumber: 1.9 Consensus size: 682
15938472 CCCAGTCTAA
* * * * * * *
15938482 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAACAGAATCGATA
* * * * * *
15938547 GTACGTAGGGGGGACCGGACTGATCCCCGGCTTGTACATTCTGCCTCTCCAACTGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGACCGATCCCCGGATTGTACATTATGCCTCTCCAACCGGCTGAGCGCC
* ** * * * *
15938612 CGTACGTCCGTTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAACCCTAGTCGGA
131 CGCACACCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAACCCTAGACAGA
* * * *
15938677 TCGAGGGTTGTGGCAGTCGGACCGGTAACACGAAGAGGCGGATCGGACCGATGCCCGGCTTGTGC
196 CCGAGGGTTGTGGAAGTCGGACCGGTAACACGAAGAGGCGGATCGGACCGATGCCCGACTTATGC
* *
15938742 ATTATGCCTCTCCGACCGGCTCTGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
261 ATTATGCCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
* *
15938807 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGTGTTGCAGCAGCAGTATCGACAGCACG-TGG
326 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGTATCGACAGCACGCAGG
* * * * * * *
15938871 GGGGACC-GAGTCGGTCCCCGACTTATGTATTCTGCCTCTCCGGCCGACAGAGTGCCTGCACGTT
391 GGGGACCAG-GCCAGTCCCCGACTTATGCATTCTGCCTCTCCGACCGACAGAGAGCCCGCACGCT
* * * * * * *
15938935 CGTTTCGTGGCTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATACGAAGTTCATTCCC
455 CGTTTCGTGGCTTAGCTTAGACATACAGAATTAATTCCATGTCTAACCATACAAAGTTCATTACC
* * * * *
15939000 AGTCTAAGATCAGATCGGACTGAGGGTTACGGTAGTAGGACCAGCAACAGGATCGGCAGCACGTA
520 AGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAACAGGATCGGCAGCACGTA
15939065 GGGGGAACAGGCCAATCCCCAGCTTGTGTGTTCTACCTCTCTGGCCGGCCTCTTCGGTCGGCTGA
585 GGGGGAACAGGCCAATCCCCAGCTTGTGTGTTCTACCTCTCTGGCCGGCCTCTTCGGTCGGCTGA
15939130 GTGCCCGCATGCTCATTTCGTAGGTTGACTTAG
650 GTGCCCGCATGCTCATTTCGTAGGTTGACTTAG
* *
15939163 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAACAGAATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAACAGAATCGATA
* * * * * **
15939228 GCACGCAGGGGGGATCGGGCCGATCCCCGGATTGTGCATTATGCCTTTTCGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGACCGATCCCCGGATTGTACATTATGCCTCTCCAACCGGCTGAGCGCC
* *
15939293 CGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCTAGACAG
131 CGCACACCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAA-CCCTAGACAG
* * * * * * *
15939358 ACCGAGGGTTGTGGAAGTGGGATCGGTAGCACGCAGAGGGGGATCGGGCTGAT-CCTCGACTTAT
195 ACCGAGGGTTGTGGAAGTCGGACCGGTAACACGAAGAGGCGGATCGGACCGATGCC-CGACTTAT
* *** * *
15939422 GCATTATGCCTCTCTGGTTGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
259 GCATTATGCCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * *
15939487 AAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCTGCAGCA-TGATCGACATCACGC
324 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGT-ATCGACAGCACGC
* * * * * *** *
15939551 AGGGGGGATCAGGCCAGTCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGAGCCCGCATG
388 AGGGGGGACCAGGCCAGTCCCCGACTTATGCATTCTGCCTCTCCGACCGACAGAGAGCCCGCACG
* *
15939616 CTCGTTTCGTGGTTTAGCTTAGACATACAGAATTCATTCCATGTCTAACCATACAAAGTTCATTA
453 CTCGTTTCGTGGCTTAGCTTAGACATACAGAATTAATTCCATGTCTAACCATACAAAGTTCATTA
** * * * * * *
15939681 CTTGTCTAAGATCAGACCAGACCGAGGTTTACGGCAGCAGGAGCTGCAGCTGGATCGGTAGCACG
518 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAACAGGATCGGCAGCACG
15939746 TAGGGGG
583 TAGGGGG
15939753 CGATCGGGTC
Statistics
Matches: 491, Mismatches: 94, Indels: 8
0.83 0.16 0.01
Matches are distributed among these distances:
681 158 0.32
682 171 0.35
683 161 0.33
684 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (682 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAACAGAATCGATA
GCACGCAGGGGGGACCGGACCGATCCCCGGATTGTACATTATGCCTCTCCAACCGGCTGAGCGCC
CGCACACCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAACCCTAGACAGA
CCGAGGGTTGTGGAAGTCGGACCGGTAACACGAAGAGGCGGATCGGACCGATGCCCGACTTATGC
ATTATGCCTCTCCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGTATCGACAGCACGCAGG
GGGGACCAGGCCAGTCCCCGACTTATGCATTCTGCCTCTCCGACCGACAGAGAGCCCGCACGCTC
GTTTCGTGGCTTAGCTTAGACATACAGAATTAATTCCATGTCTAACCATACAAAGTTCATTACCA
GTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAACAGGATCGGCAGCACGTAG
GGGGAACAGGCCAATCCCCAGCTTGTGTGTTCTACCTCTCTGGCCGGCCTCTTCGGTCGGCTGAG
TGCCCGCATGCTCATTTCGTAGGTTGACTTAG
Found at i:15939643 original size:158 final size:156
Alignment explanation
Indices: 15939112--15939663 Score: 485
Period size: 158 Copynumber: 3.5 Consensus size: 156
15939102 TCTCTGGCCG
* * * *
15939112 GCCTCTTCGGTCGGCTGAGTGCCCGCATGCTCATTTCGTAGGTT-GACTTAGGCATACGGAGTTC
1 GCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTAG-CTTAGGCATACGAAGTTC
* * *
15939176 ATTCC-TAGTCTAAGATCGGACCAGACCAAGGGTTGC-GACAACAGAATCGATAGCACGCAGGGG
65 ATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGCTG-CAGCAG-ATCGATAGCACGCAGGGG
* *
15939239 GGATCGGGCCGATCCCCGGATTGTGCATTAT
127 GGATC-GGCCGATCCCTGGCTTGTGCATTAT
* * * * * * * * *
15939270 GCCTTTTCGGCCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGAAGTTCA
* ** * ** *
15939335 TTTCATGTCTAAGCCCTAGA-CAGACCGAGGGTTG-TGGAAGTGGGATCGGTAGCACGCAGAGGG
66 TTCCATGTCTAAGATC-AGACCAGACCGAGGGTTGCT-GCAG-CAGATCGATAGCACGCAG-GGG
* * *
15939398 GGATCGGGCTGAT-CCTCGACTTATGCATTAT
127 GGATC-GGCCGATCCCT-GGCTTGTGCATTAT
* * * * *
15939429 GCCTCTCTGGTTGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTT-GACTTAGGCATACGAAGTTC
1 GCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTAG-CTTAGGCATACGAAGTTC
* * *
15939493 ATTCGCA-GTCTAAGATCAGACCGGACCGAGGGTTGCTGCAGCATGATCGACATCACGCAGGGGG
65 ATTC-CATGTCTAAGATCAGACCAGACCGAGGGTTGCTGCAGCA-GATCGATAGCACGCAGGGGG
*
15939557 GATCAGGCC-AGTCCCTGGCTTGTGCATTCT
128 GATC-GGCCGA-TCCCTGGCTTGTGCATTAT
* * * * * * *
15939587 GCCTCTCCGATCGGTTGAGAGCCCGCATGCTCGTTTCGTGGTTTAGCTTAGACATACAGAA-TTC
1 GCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATAC-GAAGTTC
15939651 ATTCCATGTCTAA
65 ATTCCATGTCTAA
15939664 CCATACAAAG
Statistics
Matches: 315, Mismatches: 61, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.01
158 181 0.57
159 128 0.41
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACGAAGTTCA
TTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCTGCAGCAGATCGATAGCACGCAGGGGGGAT
CGGCCGATCCCTGGCTTGTGCATTAT
Found at i:15939677 original size:26 final size:26
Alignment explanation
Indices: 15939639--15939689 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15939629 TTAGCTTAGA
*
15939639 CATACAGAATTCATTCCATGTCTAAC
1 CATACAGAATTCATTACATGTCTAAC
*
15939665 CATACA-AAGTTCATTACTTGTCTAA
1 CATACAGAA-TTCATTACATGTCTAA
15939690 GATCAGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
CATACAGAATTCATTACATGTCTAAC
Found at i:15940052 original size:158 final size:155
Alignment explanation
Indices: 15939757--15940175 Score: 464
Period size: 158 Copynumber: 2.7 Consensus size: 155
15939747 AGGGGGCGAT
* * * * * *
15939757 CGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCTGTACGCTCGTTTCA
1 CGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACACCCGCACGCTCGTTTCA
* * * *
15939822 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGT
66 TGGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACTAGACCAAGGGTTACGGC
** *
15939887 AGTAGGATC-GACAGCACATAGGGGGGAC
130 ACCAGGATCAG-CAGCACACA--GGGGAC
* * * * * *
15939915 TGGGCCGAT-CTCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCACACGCCCGTTTC
1 CGGGCCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACACCCGCACGCTCGTTTC
* *
15939979 ATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTGGACTAAGGGTTACGG
65 ATGGGTTGGCTTAGGCATACAGAGTTCATTCC-AGTCTAAGATCAGACTAGACCAAGGGTTACGG
*
15940044 CACCAGGATCAGCAGCACGCAGGGGAC
129 CACCAGGATCAGCAGCACACAGGGGAC
* * * * * ** ** *
15940071 CGGGTCGGTCCTCGGCTTGTGCTTTCTGCCTCTCCGATTGGTTGATTACCCGCACGCTCGTTTCG
1 CGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACACCCGCACGCTCGTTTCA
*
15940136 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TGGGTTGGCTTAGGCATACAGAGTTCATTCCA-GTCTAAG
15940176 CATACAGAGT
Statistics
Matches: 217, Mismatches: 39, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
155 1 0.00
156 88 0.41
157 7 0.03
158 120 0.55
159 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (155 bp):
CGGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACACCCGCACGCTCGTTTCA
TGGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACTAGACCAAGGGTTACGGCA
CCAGGATCAGCAGCACACAGGGGAC
Found at i:15940063 original size:672 final size:674
Alignment explanation
Indices: 15938482--15940175 Score: 1736
Period size: 672 Copynumber: 2.5 Consensus size: 674
15938472 CCCAGTCTAA
* * *
15938482 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTACGACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTACGACAGCAGGATCGAT
* * * * * ** *
15938546 AGTACGTAGGGGGGACCGGACTGATCCCCGGCTTGTACATTCTGCCTCTCCAACTGGCTGAGCGC
65 AGCACGTAGGGGGGACTGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * *
15938611 CCGTACGTCCGTTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAA-CCCTAGTCG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCTAGACG
* * * * * * *
15938675 GA-TCGAGGGTTGTGGCAGTCGGACCGGTAACACGAAGAGGCGGATCGGACCGATGCC-CGGCTT
195 GACT-GAGGGTTGTGGCA-CCGGATCGGTAGCACGCAGAGGGGGATCGGGCTGAT-CCTCGGCTT
** * *
15938738 GTGCATTATGCCTCTCCGACCGGCTCTGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATA
257 GTGCATTATGCCTCTCCGATTGGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
15938803 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGTGTTGCAGCAGCAGTATCGACAGCACG
322 CGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGTATCGACAGCACG
* * * * * * * *
15938868 TGGGGGGACCGAGTCGGTCCCCGACTTATGTATTCTGCCTCTCCGGCCGACAGAGTGCCTGCACG
386 AGGGGGGACAGAGCCAGTCCCCGACTTATGCATTCTGCCTCTCCGACCGACAGAGAGCCCGCACG
* * * * * * * *
15938933 TTCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATACGAAGTTCATTC
451 CTCGTTTCGTGGCTTAGCTTAGACATACAGAATTAATTCCATGTCTAACCATACAAAGTTCATTA
* * * * *
15938998 CCAGTCTAAGATCAGATCGGACTGAGGGTTACGGTAGTAGGACCAGCAACAGGATCGGCAGCACG
516 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAACAGGATCGGCAGCACG
* * * **
15939063 TAGGGGGAACAGGCCAATCCCCAGCTTGTGTGTTCTACCTCTCTGGCCGGCCTCTTCGGTCGGCT
581 TAGGGGGAACAGGCCAATCCCCAACTTGTGCG-TCTA-CTCTCT----GGCCTCTCCGACCGGCT
** * *
15939128 GAGTGCCCGCATGCTCATTTCGTAGGTTGACTTAG
640 GAGCACCCGCACGCTCATTTCATAGGTTGACTTAG
* * * * * *
15939163 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAACAGAATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCAGGATCGATA
* * * * *
15939228 GCACGCAGGGGGGA-TCGGGCCGATCCCCGGATTGTGCATTATGCCTTTTCGGCCGGCTGAGCGC
66 GCACGTAGGGGGGACT-GGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * * *
15939292 CCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCTAGACA
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCTAGACG
* * ** * *
15939357 GACCGAGGGTTGTGGAAGTGGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTAT
195 GACTGAGGGTTGTGGCA-CCGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGT
* * *
15939422 GCATTATGCCTCTCTGGTTGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
259 GCATTATGCCTCTCCGATTGGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
15939487 AAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCTGCAGCA-TGATCGACATCACGC
324 GAGTTCATTC-CAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGT-ATCGACAGCACG-
* * * * *** *
15939551 AGGGGGGATCAG-GCCAGTCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGAGCCCGCAT
386 AGGGGGGA-CAGAGCCAGTCCCCGACTTATGCATTCTGCCTCTCCGACCGACAGAGAGCCCGCAC
* *
15939615 GCTCGTTTCGTGGTTTAGCTTAGACATACAGAATTCATTCCATGTCTAACCATACAAAGTTCATT
450 GCTCGTTTCGTGGCTTAGCTTAGACATACAGAATTAATTCCATGTCTAACCATACAAAGTTCATT
** * * * * * *
15939680 ACTTGTCTAAGATCAGACCAGACCGAGGTTTACGGCAGCAGGAGCTGCAGCTGGATCGGTAGCAC
515 ACCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAACAGGATCGGCAGCAC
* * * * *
15939745 GTAGGGGGCGATCGGGTCGATCCCCAAC-T-TGCG-C-A-T-TCT-GCCTCTCCGACCGGTTGAG
580 GTA-GGGG-GAACAGGCCAATCCCCAACTTGTGCGTCTACTCTCTGGCCTCTCCGACCGGCTGAG
* * * *
15939803 CACCTGTACGCTCGTTTCATGGGTTGACTTAG
643 CACCCGCACGCTCATTTCATAGGTTGACTTAG
* ** * *
15939835 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCAGGATCGATA
* * ** * *
15939900 GCACATAGGGGGGACTGGGCCGATCTCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCC
66 GCACGTAGGGGGGACTGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * * **
15939965 CACACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATC-AGACT
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCAT-GTCTAAGCCCTAGAC-
* ** * * * *
15940028 GGACTAAGGGTTACGGCACCAGGATCAGCAGCACGC--A-GGGGACCGGG-TCGGTCCTCGGCTT
194 GGACTGAGGGTTGTGGCACC-GGATCGGTAGCACGCAGAGGGGGATCGGGCT-GATCCTCGGCTT
* * * * * * * *
15940089 GTGCTTTCTGCCTCTCCGATTGGTTGATTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
257 GTGCATTATGCCTCTCCGATTGGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA
15940154 CGGAGTTCATTCCATGTCTAAG
322 CGGAGTTCATTCCA-GTCTAAG
15940176 CATACAGAGT
Statistics
Matches: 829, Mismatches: 167, Indels: 46
0.80 0.16 0.04
Matches are distributed among these distances:
668 3 0.00
669 91 0.11
670 1 0.00
671 5 0.01
672 217 0.26
673 1 0.00
677 3 0.00
678 1 0.00
680 1 0.00
681 158 0.19
682 169 0.20
683 158 0.19
684 7 0.01
685 14 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (674 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCAGGATCGATA
GCACGTAGGGGGGACTGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCTAGACGG
ACTGAGGGTTGTGGCACCGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGTGC
ATTATGCCTCTCCGATTGGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGTATCGACAGCACGAGGGG
GGACAGAGCCAGTCCCCGACTTATGCATTCTGCCTCTCCGACCGACAGAGAGCCCGCACGCTCGT
TTCGTGGCTTAGCTTAGACATACAGAATTAATTCCATGTCTAACCATACAAAGTTCATTACCAGT
CTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGCAACAGGATCGGCAGCACGTAGGG
GGAACAGGCCAATCCCCAACTTGTGCGTCTACTCTCTGGCCTCTCCGACCGGCTGAGCACCCGCA
CGCTCATTTCATAGGTTGACTTAG
Found at i:15940185 original size:26 final size:26
Alignment explanation
Indices: 15940149--15940201 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15940139 GTTGGCTTAG
*
15940149 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
15940175 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
15940201 G
1 G
15940202 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:15940412 original size:511 final size:512
Alignment explanation
Indices: 15939455--15940412 Score: 1173
Period size: 511 Copynumber: 1.9 Consensus size: 512
15939445 CAGTGCCCGT
* *
15939455 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGATCAGACCGGACC
1 ACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGATCAGACCGGACC
* * * * * * *
15939520 GAGGGTTGCTGCAGCATGATCGACATCACGCAGGGGGGATCAGGCCAGTCCCTGGCTTGTGCATT
66 AAGGGTTACGGCACCAGGATCGACAGCACGCA-GGGGGACCAGGCCAGTCCCTGGCTTGTGCATT
* *
15939585 CTGCCTCTCCGATCGGTTGAGAGCCCGCATGCTCGTTTCGTGGTTTAGCTTAGACATACAGAATT
130 CTGCCTCTCCGATCGGTTGAGAGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGACATACAGAATT
* *
15939650 CATTCCATGTCTAACCATACAAAGTTCATTACTTGTCTAAGATCAGACCAGACCGAGGTTTACGG
195 CATTCCATGTCTAACCATACAAAGTTCATTACTAGTCTAAGATCAGACCAGACCGAGGGTTACGG
* * * ** * * * *
15939715 CAGCAGGAGCTGCAGCTGGATCGGTAGCACGTAGGGGGCGATCGGGTCGATCCCCAACTTGCGCA
260 CAGCAGGACCAGCAGCAGGATCGACAACACGCAGGGGGCGATCAGGTCAATCCCCAACTTGCGCA
** * * *
15939780 TTCTGCCTCTCCGACCGGTTGAGCACCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAG
325 TTCTGCCTCTCCGACCGACTGAGCACCCGTAAGCTCATTTCATGGGTTGACTTAGGCATACAGAG
* * * * ** *
15939845 TTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGTAGTAGGATCGACAGCACATAGGG
390 TTCATTCCCAGTCTAAGACCAGACTAGACCAAGGGTTACGATAACAGGACCGACAGCACATAGGG
15939910 GGGACTGGGCCGATCTCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCAC
455 GGGACTGGGCCGATCTCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCAC
* *
15939968 ACGCCCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTC-CTAGTCTAAGATCAGACTGGA
1 ACGCCCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCGC-AGTCTAAGATCAGACCGGA
* * * *
15940031 CTAAGGGTTACGGCACCAGGATC-AGCAGCACGCA-GGGGACCGGGTCGGT-CCTCGGCTTGTGC
64 CCAAGGGTTACGGCACCAGGATCGA-CAGCACGCAGGGGGACCAGGCCAGTCCCT-GGCTTGTGC
* * * * * *
15940093 TTTCTGCCTCTCCGATTGGTTGATTA-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
127 ATTCTGCCTCTCCGATCGGTTGA-GAGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGACATACAG
* * * *
15940157 AGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CTCAGTCTAAGATCAGACCAGATCGAGGGT
191 AATTCATTCCATGTCTAACCATACAAAGTTCATTACT-AGTCTAAGATCAGACCAGACCGAGGGT
* * *
15940221 TGCGGCAGCAGGACCAGCAGCAGGATCGACAACGCGCAGAGGGG-GATCAGGTCAATCCCCGACT
255 TACGGCAGCAGGACCAGCAGCAGGATCGACAACACGCAG-GGGGCGATCAGGTCAATCCCCAACT
* ** *
15940285 TGCGCATTCTGCCTCTCC-AGCTGACTGAGCACCCGTAAGCTCATTTTGTGGGTTGGCTTAGGCA
319 TGCGCATTCTGCCTCTCCGA-CCGACTGAGCACCCGTAAGCTCATTTCATGGGTTGACTTAGGCA
* * * ** *
15940349 TACAGAGTTCATT-CCATGTCTAAGCCCCAGTC-GGACCAAGGGTTGTGATAACGGGACCGACAG
383 TACAGAGTTCATTCCCA-GTCTAAG-ACCAGACTAGACCAAGGGTTACGATAACAGGACCGACAG
15940412 C
446 C
15940413 GAGATCGACA
Statistics
Matches: 372, Mismatches: 63, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
510 9 0.02
511 272 0.73
512 11 0.03
513 80 0.22
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (512 bp):
ACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGATCAGACCGGACC
AAGGGTTACGGCACCAGGATCGACAGCACGCAGGGGGACCAGGCCAGTCCCTGGCTTGTGCATTC
TGCCTCTCCGATCGGTTGAGAGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGACATACAGAATTC
ATTCCATGTCTAACCATACAAAGTTCATTACTAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
AGCAGGACCAGCAGCAGGATCGACAACACGCAGGGGGCGATCAGGTCAATCCCCAACTTGCGCAT
TCTGCCTCTCCGACCGACTGAGCACCCGTAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
TCATTCCCAGTCTAAGACCAGACTAGACCAAGGGTTACGATAACAGGACCGACAGCACATAGGGG
GGACTGGGCCGATCTCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCCCAC
Found at i:15940937 original size:159 final size:158
Alignment explanation
Indices: 15940550--15940957 Score: 394
Period size: 159 Copynumber: 2.6 Consensus size: 158
15940540 TAAGCATCAA
* * * *
15940550 GAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACAGGATCGACAGCACGCA
** * * * * * ***
15940615 -GGTCGGACCAGGTCGAT-CCCGGCTTGCGCATTCTACCTCTCCGATCGGCTTAGTGTCCGCACG
66 GGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATACCTCTCCAACCAGCTCAGCACCCGCACG
* *
15940678 CCCGTTTCATGGGTTGGCTTAGGCATAG
131 CCCATTTCATGGGTTGACTTAGGCATAG
** ** * *
15940706 GTAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAACAAGA-CTGGCAGCA
1 G-AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGGCAACAGGATC-GACAGCA
* * *
15940768 CGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCAGCTCAGCACCCG
62 CGCAGGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATACCTCTCCAACCAGCTCAGCACCCG
* * ** *
15940833 CATGCTCATTTTGTGGGTTGACTTAGGCATTCG
127 CACGCCCATTTCATGGGTTGACTTAGGCA-TAG
* ** * *
15940866 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCATTAGGATCGACAGCATGGA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACAGGATCGACAGCACGCA
** *
15940931 GGGGGGGACTTGGTCGATCCCCAGCTT
66 GGGGGGGACCAGGTCGATCCCCGGCTT
15940958 ACGGTTTCTG
Statistics
Matches: 197, Mismatches: 45, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
156 4 0.02
157 47 0.24
158 16 0.08
159 123 0.62
160 7 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAACAGGATCGACAGCACGCA
GGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATACCTCTCCAACCAGCTCAGCACCCGCACG
CCCATTTCATGGGTTGACTTAGGCATAG
Found at i:15941162 original size:869 final size:870
Alignment explanation
Indices: 15939980--15941951 Score: 2344
Period size: 869 Copynumber: 2.3 Consensus size: 870
15939970 GCCCGTTTCA
* * * *
15939980 TGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTGGACTAAGGGTTACGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGC
* * *
15940045 ACCAGGATC-AGCAGCACGCA--GGGGAC-CGGGTCGGTCCTCGGCTTGTGCTTTCTGCCTCTCC
66 ACCAGGATCGA-CAGCACGCAGGGGGGACTC-GGTCGATCC-CCGCTTATGCTTTCTGCCTCTCC
** ** *
15940106 GATTGGTTGATTACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
128 GACCGACTGATTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
15940171 CTAAGCATAC-AGAGTTCATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGAC
193 CTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGAC
* * * * * * *
15940235 CAGCAGCAGGATCGACAACGCGCAGAGGGGGATCAGGTCAATCCCCGACTTGCGCATTCTGCCTC
257 CAGCAGCAGGATCGACAACCCACAGAAGAGGACCAGGCCAATCCCCGACTTACGCATTCTGCCTC
* * **
15940300 TCCAGCTGACTGAGCACCCGTAA-GCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
322 TCCAGCTGACTGAGCACCC-AAACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
** * * **
15940364 ATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGATAACGGGACCGACAGCGAGATCGACAGCACGA
386 ATGTCTAAGCCCCAACCAGACCAAGGGTTGTGACAACAAGACCGACAGCGAGATCGACAGCACGA
* * * * *
15940429 AGAGTGGGACCAGGCTGATCTTCGGCTTACGCATTA-T-GCCTCTCCGACCGGCTGAGTGCCCGC
451 AGAGGGGGACCAGGCTGATCCTCGGCTTACGCATTACTAGCCTCTCCGACCGACTGAGCGCCCAC
*
15940492 ACGCTCGTTTCATGGGTTGACGTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT-CAAGAGTTC
516 ACGCTCATTTCATGGGTTGACGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-AGAGTTC
* * * *
15940556 ATTCCTAGTCTAAGATCGGA-CTGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGTCG
580 ATTCCCAATCTAAGATCAGATC-GGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGG-CG
* * * * *
15940620 -GACCAGGTCGAT-CCCGGCTTGCGCATTCTACCTCTCCGA-TCGGCTT-AGTGTCCGCACGCCC
643 CGACCAAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACT-GG-TTGACTGCCCGCACGCCC
* *
15940681 GTTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
706 GTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGAT
* * * * * *
15940746 TGTGGCAACAAGACTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCG-GCTTGCGCATTATGC
771 TGTGGCAACAAGACCGACAGCACGCAGA-GGGGACCGAGCCGATCCCCGAGCTTACGCATTAAGC
* * *
15940810 CTCTCCAACCAGCTCAGCACCCGCATGCTCATTTTG
835 CTCTCCAACCAGCTCAGCACCCGAACGCTCATTTGG
* ** *
15940846 TGGGTTGACTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGC
** * * * * *
15940911 ATTAGGATCGACAGCATGGAGGGGGGGACTTGGTCGATCCCCAGCTTACGGTTTCTGCCTCTCCG
66 ACCAGGATCGACAGCACGCA-GGGGGGACTCGGTCGATCCCC-GCTTATGCTTTCTGCCTCTCCG
* * *
15940976 ACCGACGGATTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAATCGATGTC
129 ACCGACTGATTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
15941041 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGGCCGGA-CTGAGGGTTACGGTAGCAGGACC
194 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTACGGCAGCAGGACC
* * *
15941105 AGCAGCAGGATCGATAGCCCATAGAAGAGGACC-GAGCCAATCCCC-AGCTTACGCATTCTGCCT
258 AGCAGCAGGATCGACAACCCACAGAAGAGGACCAG-GCCAATCCCCGA-CTTACGCATTCTGCCT
* * *** * *
15941168 CTCCGGCTGGCTGAGCGTTCAAACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
321 CTCCAGCTGACTGAGCACCCAAACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
* * * * * * * * *
15941233 ATGTCTAAGCCCCAACCAGATCGAGGGTTGTGACAGCAAGATCGATAGGGAGATTGGCAGCACGC
386 ATGTCTAAGCCCCAACCAGACCAAGGGTTGTGACAACAAGACCGACAGCGAGATCGACAGCACGA
* * * *
15941298 AGAGGGGGACCGGGTTGATCCTCGGCTTGCGTATTATGCCTCTCTGGCTAGCCTCTCCGACCGAC
451 AGAGGGGGACCAGGCTGATCCTCGGCTTACGCATTA-----------CTAGCCTCTCCGACCGAC
* *
15941363 TGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
505 TGAGCGCCCACACGCTCATTTCATGGGTTGACGTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* *
15941428 TACAGAGTTTATTCCCAATCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCGACAGCA
570 TACAGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCA
*
15941493 CGCAGGGGCGACCAAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACTGGTTGACTGCCCGC
635 CGCAGGCGCGACCAAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACTGGTTGACTGCCCGC
* **
15941558 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
700 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGACC
** * *
15941623 GAGGATTGTGGCAACGGGACCGACAGCACGCAGAGGGGACCGAGCCGATCCTCGAGCTTATGCAT
765 GAGGATTGTGGCAACAAGACCGACAGCACGCAGAGGGGACCGAGCCGATCCCCGAGCTTACGCAT
* *** * *
15941688 TAAGCCTCTCCGATTTGCTCAGCGCCCGAACGCTCGTTTGG
830 TAAGCCTCTCCAACCAGCTCAGCACCCGAACGCTCATTTGG
* * ** **
15941729 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGACTGGACTGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGC
* * * * *
15941794 AGCAGGATCGACAGCACGTAGGGGGGA-TCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCG
66 ACCAGGATCGACAGCACGCAGGGGGGACTCG-GTCGATCCCCG-CTTATGCTTTCTGCCTCTCCG
** * * * * *
15941858 ACCGACTGAGCGCCCACACGCTCGTTACGTGGGTCGACTTAGGCATACAGAGTTCATTCCATGTC
129 ACCGACTGATTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
*
15941923 TAAGCATACGGAGTTCATTCCCAGTCTAA
194 TAAGCATACGAAGTTCATTCCCAGTCTAA
15941952 AATCGAATCG
Statistics
Matches: 927, Mismatches: 146, Indels: 50
0.83 0.13 0.04
Matches are distributed among these distances:
866 71 0.08
867 1 0.00
868 6 0.01
869 325 0.35
870 1 0.00
881 5 0.01
882 280 0.30
883 237 0.26
884 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (870 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGC
ACCAGGATCGACAGCACGCAGGGGGGACTCGGTCGATCCCCGCTTATGCTTTCTGCCTCTCCGAC
CGACTGATTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGACCAGC
AGCAGGATCGACAACCCACAGAAGAGGACCAGGCCAATCCCCGACTTACGCATTCTGCCTCTCCA
GCTGACTGAGCACCCAAACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
TAAGCCCCAACCAGACCAAGGGTTGTGACAACAAGACCGACAGCGAGATCGACAGCACGAAGAGG
GGGACCAGGCTGATCCTCGGCTTACGCATTACTAGCCTCTCCGACCGACTGAGCGCCCACACGCT
CATTTCATGGGTTGACGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
AATCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGCGCGACCAAG
CCGATCCCCGGCTTGCACATTCTACCTCTCCGACTGGTTGACTGCCCGCACGCCCGTTTCATGGG
TTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGATTGTGGCAACA
AGACCGACAGCACGCAGAGGGGACCGAGCCGATCCCCGAGCTTACGCATTAAGCCTCTCCAACCA
GCTCAGCACCCGAACGCTCATTTGG
Found at i:15941435 original size:26 final size:26
Alignment explanation
Indices: 15941399--15941451 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15941389 GTTGACTTAG
* *
15941399 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15941425 GCATACAGAGTTTATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15941451 G
1 G
15941452 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15941905 original size:158 final size:157
Alignment explanation
Indices: 15941425--15941917 Score: 482
Period size: 158 Copynumber: 3.1 Consensus size: 157
15941415 CCCAGTCTAA
* ** *
15941425 GCATACAGAGTTTATTCCCAATCTAAGATCAGATCGGA-TCGAGGGTTACGACAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACT-GAGGGTTGTGGCAGCAGGATCGAC
* * * *** *
15941489 AGCACGCAGGGGCGACCAAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGACTGGTTGA-CTG
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCGACT-GCTGAGC-G
* * *
15941553 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCACACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * * *
15941583 GCATA-GGAAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGATTGTGGCAACGGGACCG
1 GCATACAG-AGTTCATTCCCA-ATCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCG
* * * * *
15941645 ACAGCACGCAGAGGGGACCGAGCCGATCCTCGAGCTTATGCATT-AAGCCTCTCCGATTTGCTCA
63 ACAGCACGCAGGGGGGACCGAGCCGATCCCCGA-CTTATGCATTCTA-CCTCTCCGA-CTGCTGA
*
15941709 GCGCCCGA-ACGCTCGTTTGGTGGGTTGACTTAG
125 GCGCCC-ACACGCTCGTTTCGTGGGTTGACTTAG
**
15941742 GCATAC-GAAGTTCATTCCCAATCTAAGATTGGA-CTGGACTGAGGGTTGTGGCAGCAGGATCGA
1 GCATACAG-AGTTCATTCCCAATCTAAGATCAGATC-GGACTGAGGGTTGTGGCAGCAGGATCGA
* * *
15941805 CAGCACGTAGGGGGGATCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCGACCGACTGAGCG
64 CAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCGACTG-CTGAGCG
* *
15941870 CCCACACGCTCGTTACGTGGGTCGACTTAG
128 CCCACACGCTCGTTTCGTGGGTTGACTTAG
15941900 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
15941918 ATGTCTAAGC
Statistics
Matches: 268, Mismatches: 50, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
157 6 0.02
158 135 0.50
159 122 0.46
160 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCGACTGCTGAGCGCCC
ACACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15941925 original size:158 final size:157
Alignment explanation
Indices: 15941476--15941927 Score: 475
Period size: 159 Copynumber: 2.9 Consensus size: 157
15941466 AGGGTTACGA
* * * ***
15941476 CAGCAGGATCGACAGCACGCAGGGGCGACCAAGCCGATCCCCGGCTTGCACATTCTACCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCG
* * * * *
15941541 ACTGGTTGA-CTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGT
66 ACT-GCTGAGC-GCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGT
*
15941605 CTAAGCCCCAGTCGGACCGAGGATTGTGG
129 CTAAGCCCCACTCGGACCGAGGATTGTGG
* * * * * *
15941634 CAACGGGACCGACAGCACGCAGAGGGGACCGAGCCGATCCTCGAGCTTATGCATT-AAGCCTCTC
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGA-CTTATGCATTCTA-CCTCTC
* * *
15941698 CGATTTGCTCAGCGCCCGA-ACGCTCGTTTGGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
64 CGA-CTGCTGAGCGCCC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCA
* **** * *
15941762 -ATCTAAGATTGGACT-GGACTGAGGGTTGTGG
126 TGTCTAAG-CCCCACTCGGACCGAGGATTGTGG
* *
15941793 CAGCAGGATCGACAGCACGTAGGGGGGATCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCG
* * *
15941858 ACCGACTGAGCGCCCACACGCTCGTTACGTGGGTCGACTTAGGCATAC-AGAGTTCATTCCATGT
66 ACTG-CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCATGT
15941922 CTAAGC
129 CTAAGC
15941928 ATACGGAGTT
Statistics
Matches: 238, Mismatches: 44, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
157 6 0.03
158 107 0.45
159 118 0.50
160 7 0.03
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (157 bp):
CAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTATGCATTCTACCTCTCCG
ACTGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCT
AAGCCCCACTCGGACCGAGGATTGTGG
Found at i:15941936 original size:26 final size:26
Alignment explanation
Indices: 15941900--15941951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15941890 GTCGACTTAG
15941900 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15941926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15941952 AATCGAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15941973 original size:882 final size:868
Alignment explanation
Indices: 15940123--15941984 Score: 2238
Period size: 882 Copynumber: 2.1 Consensus size: 868
15940113 TGATTACCCG
*
15940123 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * * * *
15940188 ATTCTCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAA
66 ATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAA
* * * * * * *
15940253 CGCGCAGAGGGGGATCAGGTCAATCCCCGACTTGCGCATTCTGCCTCTCCAGCTGACTGAGCACC
130 CCCACAGAAGAGGACCAGGCCAATCCCCGACTTACGCATTCTGCCTCTCCAGCTGACTGAGCACC
* * ** ** *
15940318 CGTAAGCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGG
195 CGAAAACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAG
* ** *
15940383 ACCAAGGGTTGTGATAACGGGACCGACAGCGAGATCGACAGCACGAAGAGTGGGACCAGGCTGAT
260 ACCAAGGGTTGTGACAACAAGACCGACAGCGAGATCGACAGCACGAAGAGGGGGACCAGGCTGAT
* * * * *
15940448 CTTCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGAC
325 CCTCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCACACGCTCATTTCATGGGTTGAC
* * *
15940513 GTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCAAGAGTTCATTCCTAGTCTAAGATCGGACT
390 GTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCAAGAGTTCATTCCCAATCTAAGATCAGACT
* * * * *
15940578 GGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGTCGGACCAGGTCGATCCCGGCTTGCG
455 GGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGCGGACCAAGCCGATCCCGGCTTGCA
* * *
15940643 CATTCTACCTCTCCGATCGGCTTAGTGTCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGT
520 CATTCTACCTCTCCGATCGGCTTACTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGA
* * *
15940708 AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAAGACTGGCAGCACGCAG
585 AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGATTGTGGCAACAAGACCGACAGCACGCAG
* * * * * *
15940773 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCAGCTCAGCACCCGCATGC
650 AGGGGGACCGAGCCGATCCCCGGCTTACGCATTAAGCCTCTCCAACCAGCTCAGCACCCGAACGC
* * * *
15940838 TCATTTTGTGGGTTGACTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
715 TCATTTGGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGG
** * * * ** *
15940903 GTTACGGCATTAGGATCGACAGCATGGAGGGGGGGACTTGGTCGATCCCCAGCTTACGGTTTCTG
780 GTTACGGCAGCAGGATCGACAGCACGGAGGGGGGGACTCGGCCGATCCCCAGCTTACGCATTCTA
** *
15940968 CCTCTCCGACCGACGGATTGCCCG
845 CCTCTCCGACCGACGGAGCGCCCA
* * *
15940992 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAATCGATGTCTAAGCATACGAAGTTC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * * * *
15941057 ATTCCCAGTCTAAGATCAGGCCGGACTGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGATAG
66 ATTCCCAGTCTAAGATCA-GACGAACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAA
* * * *
15941122 CCCATAGAAGAGGACC-GAGCCAATCCCC-AGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCG
130 CCCACAGAAGAGGACCAG-GCCAATCCCCGA-CTTACGCATTCTGCCTCTCCAGCTGACTGAGCA
** * *
15941185 TTC-AAACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
193 CCCGAAA-ACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * * * * * * * *
15941249 CAGATCGAGGGTTGTGACAGCAAGATCGATAGGGAGATTGGCAGCACGCAGAGGGGGACCGGGTT
257 CAGACCAAGGGTTGTGACAACAAGACCGACAGCGAGATCGACAGCACGAAGAGGGGGACCAGGCT
* *
15941314 GATCCTCGGCTTGCGTATTATGCCTCTCTGGCTAGCCTCTCCGACCGACTGAGCGCCCACACGCT
322 GATCCTCGGCTTACGCATTA------------T-GCCTCTCCGACCGACTGAGCGCCCACACGCT
* * *
15941379 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT-ACAGAGTTTATTCC
374 CATTTCATGGGTTGACGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATCA-AGAGTTCATTCC
*
15941443 CAATCTAAGATCAGA-TCGGATCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGG-GCGACC
438 CAATCTAAGATCAGACT-GGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGCG-GACC
*
15941506 AAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGA-CTGG-TTGACTGCCCGCACGCTCGTTTC
501 AAGCCGAT-CCCGGCTTGCACATTCTACCTCTCCGATC-GGCTT-ACTGCCCGCACGCCCGTTTC
**
15941569 ATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGATTGTGG
563 ATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGATTGTGG
** * *
15941634 CAACGGGACCGACAGCACGCAGA-GGGGACCGAGCCGATCCTCGAGCTTATGCATTAAGCCTCTC
628 CAACAAGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCG-GCTTACGCATTAAGCCTCTC
* *** * *
15941698 CGATTTGCTCAGCGCCCGAACGCTCGTTTGGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAA
692 CAACCAGCTCAGCACCCGAACGCTCATTTGGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAA
** ** * ** *
15941763 TCTAAGATTGGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTA-GGGGGGA-TCGAG
757 TCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGGAGGGGGGGACTCG-G
* *
15941826 CCGATCCCC-GACTTATGCATTCTACCTCTCCGACCGACTGAGCGCCCA
821 CCGATCCCCAG-CTTACGCATTCTACCTCTCCGACCGACGGAGCGCCCA
* * * *
15941874 CACGCTCGTTACGTGGGTCGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* *
15941939 ATTCCCAGTCTAAAATC-GAATCGAACCAAGGGTTACGGTAGCAGGA
66 ATTCCCAGTCTAAGATCAG-A-CGAACCGAGGGTTACGGTAGCAGGA
15941985 TTGGCAGCAC
Statistics
Matches: 833, Mismatches: 132, Indels: 43
0.83 0.13 0.04
Matches are distributed among these distances:
868 4 0.00
869 278 0.33
870 2 0.00
880 1 0.00
881 7 0.01
882 306 0.37
883 235 0.28
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (868 bp):
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACGAACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGACAAC
CCACAGAAGAGGACCAGGCCAATCCCCGACTTACGCATTCTGCCTCTCCAGCTGACTGAGCACCC
GAAAACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGA
CCAAGGGTTGTGACAACAAGACCGACAGCGAGATCGACAGCACGAAGAGGGGGACCAGGCTGATC
CTCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCACACGCTCATTTCATGGGTTGACG
TAGGCATACGGAGTTCATCCCCAGTCTAAGCATCAAGAGTTCATTCCCAATCTAAGATCAGACTG
GACCGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGCGGACCAAGCCGATCCCGGCTTGCAC
ATTCTACCTCTCCGATCGGCTTACTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAA
GTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGATTGTGGCAACAAGACCGACAGCACGCAGA
GGGGGACCGAGCCGATCCCCGGCTTACGCATTAAGCCTCTCCAACCAGCTCAGCACCCGAACGCT
CATTTGGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGG
TTACGGCAGCAGGATCGACAGCACGGAGGGGGGGACTCGGCCGATCCCCAGCTTACGCATTCTAC
CTCTCCGACCGACGGAGCGCCCA
Found at i:15942199 original size:197 final size:197
Alignment explanation
Indices: 15941849--15942235 Score: 517
Period size: 197 Copynumber: 2.0 Consensus size: 197
15941839 TATGCATTCT
15941849 ACCTCTCCGACCGACTGAGCGCCCACACGCTCGTTACGTGGGTCGACTTAGGCATACAGAGTTCA
1 ACCTCTCCGACCGACTGAGCGCCCACACGCTCGTTACGTGGGTCGACTTAGGCATACAGAGTTCA
* ** *
15941914 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGAATCGAACCAAGGGTTACGGTA
66 TCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATCGAACCGAACCAAGGGTTACGGTA
** * *
15941979 GCAGGATTGGCAGCACACAAGGGGGACAGAGCTGATCCTCGGCTTGCACATTCTGCCTCTCCTAC
131 GCAGGATCAGCAGCACACAAGGGGGACAGAGCTAATCCTCGACTTGCACATTCTGCCTCTCCTAC
15942044 CG
196 CG
* * * * * **
15942046 ACCTCTCCGGCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
1 ACCTCTCCGACCGACTGAGCGCCCACACGCTCGTTACGTGGGTCGACTTAGGCATACAGAGTTCA
* * * * *
15942111 TCCTCA-GTCTAAGCATACAAAGTTCATTCCTAGTCTAAGATCTAACCGGACCGAGGG-TAGCGG
66 TCC-CATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATCGAACCGAACCAAGGGTTA-CGG
* ** * *
15942174 TAGCAGGATCAGTAGCATGCAAGGGGGACCGAGCTAATCCTCGATTTGCACATTCTGCCTCT
129 TAGCAGGATCAGCAGCACACAAGGGGGACAGAGCTAATCCTCGACTTGCACATTCTGCCTCT
15942236 TCGACCGGCT
Statistics
Matches: 163, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
196 2 0.01
197 159 0.98
198 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (197 bp):
ACCTCTCCGACCGACTGAGCGCCCACACGCTCGTTACGTGGGTCGACTTAGGCATACAGAGTTCA
TCCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATCGAACCGAACCAAGGGTTACGGTA
GCAGGATCAGCAGCACACAAGGGGGACAGAGCTAATCCTCGACTTGCACATTCTGCCTCTCCTAC
CG
Found at i:15944274 original size:354 final size:361
Alignment explanation
Indices: 15943626--15944276 Score: 836
Period size: 354 Copynumber: 1.8 Consensus size: 361
15943616 TCCGATCAAC
* * * * * *
15943626 TGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTTTAAGCT
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCATATCTAAGCA
* *
15943691 TACGGACTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTAGCAGGACTAGCAGCA
66 TACGGACTTCAGTCCCAATCTAAGATCAGACCGGACCAAGGGTT---GTAGCAGGA-TA--AGCA
** * *
15943756 GGATCGACAGCTTGCAGGGGGGACCGAGTCGATCCCCGACTTACGCAGTCTACCTCTTAGGCCGG
125 GGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCAGTCTACATCTTAGGCCGG
* * *
15943821 CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
190 CGGAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
*
15943886 CCCAGCCGAACCAAGGGTTGTGGCAGCAGGATCGGCAATGGGATCGACAGCACGCAGAGGGGGAT
255 CCCAGCCGAACCAAGGGTTGTGGCAACAGGATCGGCAATGGGATCGACAGCACGCAGAGGGGGAT
15943951 CGGGCTGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGT
320 CGGGCTGATCCCCGACTTGCACATTATGCCTCTCCGGCCGGT
* *
15943993 TGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-ATCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATT-CCATATCTAAGC
* * * *
15944057 ATACGGAGTTCAGTCCCAATCTAAGATCGGACCGGACCGAGGG-T-T-GC-GG-T-AGCATGATC
65 ATACGGACTTCAGTCCCAATCTAAGATCAGACCGGACCAAGGGTTGTAGCAGGATAAGCAGGATC
* * * *
15944116 GACAGCACGCA-GGGGGACCGAGCCGGTCCCC-AGCTTGCGCATTCTACATCTTTGGCCGGCGGA
130 GACAGCACGCAGGGGGGACCGAGCCGATCCCCGA-CTTACGCAGTCTACATCTTAGGCCGGCGGA
** * **
15944179 ATGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
194 ACACCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
* * **
15944243 AGCCGGACCGAGGGTTGTGGCAATGGGATCGGCA
258 AGCCGAACCAAGGGTTGTGGCAACAGGATCGGCA
15944277 GCACTCAGAG
Statistics
Matches: 246, Mismatches: 35, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
353 2 0.01
354 127 0.52
355 17 0.07
358 1 0.00
360 2 0.01
361 2 0.01
362 1 0.00
366 1 0.00
367 90 0.37
368 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (361 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCATATCTAAGCA
TACGGACTTCAGTCCCAATCTAAGATCAGACCGGACCAAGGGTTGTAGCAGGATAAGCAGGATCG
ACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCAGTCTACATCTTAGGCCGGCGGAAC
ACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGC
CGAACCAAGGGTTGTGGCAACAGGATCGGCAATGGGATCGACAGCACGCAGAGGGGGATCGGGCT
GATCCCCGACTTGCACATTATGCCTCTCCGGCCGGT
Found at i:15944520 original size:158 final size:158
Alignment explanation
Indices: 15944055--15944555 Score: 465
Period size: 159 Copynumber: 3.2 Consensus size: 158
15944045 CCCAATCTAA
* * * *
15944055 GCATACGGAGTTCAGTCCCA-ATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCATGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * * * *
15944119 AGCACGCA-GGGGGACCGAGCCGGTCCCCAGCTTGCGCATTCTACATCTTTGGCCGGCGGAATGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCAGAACGC
*
15944183 CCGCACGC-CTGTTTCATGGGTTGGCTTAG
130 CCACACGCTC-GTTTCATGGGTTGGCTTAG
* ** * * *** *
15944212 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAATGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * *
15944276 AGCACTCAGAGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGACACAGCG
65 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCAGAACG
* ** **
15944341 CCCAAAATCTCGTTTCATGGGTTAACTTAG
129 CCCACACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
15944371 GCAAACGGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCAAGGGTTGCGATAGCAGGATTGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * *
15944435 AACACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAACAC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCAGAACGC
**
15944500 CCACACGCTCGTTTTGTGGGTTGGCTTAG
130 CCACACGCTCGTTTCATGGGTTGGCTTAG
*
15944529 GCTTACGGAGGTT-ATTCCATGTCTAAG
1 GCATACGGA-GTTCATTCCATGTCTAAG
15944556 CATATGGAGT
Statistics
Matches: 263, Mismatches: 72, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
156 4 0.02
157 50 0.19
158 93 0.35
159 115 0.44
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCAGAACGCC
CACACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15945962 original size:26 final size:26
Alignment explanation
Indices: 15945927--15945979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15945917 GTTGACTTAG
*
15945927 GCATATAGAGTTCATCCCCAGTCCAA
1 GCATACAGAGTTCATCCCCAGTCCAA
*
15945953 GCATACAGAGTTCATTCCCAGTCCAA
1 GCATACAGAGTTCATCCCCAGTCCAA
15945979 G
1 G
15945980 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCCAA
Found at i:15946456 original size:26 final size:27
Alignment explanation
Indices: 15946416--15946468 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
15946406 GTTTCGTGGG
*
15946416 TTGTCTTAGGCATACGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
15946443 TTGTC-TAAGCATACGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
15946469 CAGTCTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TTGTCTTAAGCATACGGAGTTCATTCC
Found at i:15946474 original size:26 final size:26
Alignment explanation
Indices: 15946425--15946475 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15946415 GTTGTCTTAG
**
15946425 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15946451 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15946476 TGATTTTGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15947182 original size:26 final size:26
Alignment explanation
Indices: 15947146--15947198 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15947136 GTTGACTTAG
15947146 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15947172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15947198 G
1 G
15947199 ATCAAGCCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15947697 original size:26 final size:26
Alignment explanation
Indices: 15947645--15947697 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15947635 GATGGCTTAG
*
15947645 GCATACAGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15947671 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
15947697 G
1 G
15947698 ATCGGTCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15947859 original size:26 final size:26
Alignment explanation
Indices: 15947830--15947882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15947820 GTTGACTTAG
*
15947830 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15947856 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15947882 G
1 G
15947883 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15947922 original size:185 final size:181
Alignment explanation
Indices: 15947489--15947923 Score: 477
Period size: 185 Copynumber: 2.4 Consensus size: 181
15947479 GTTGACTTAC
* * * *
15947489 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTT-TTCATAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGCA-A-CAGGATCGAC
* * * *
15947553 AGCATGCAGGGGGACGGGTCGATCACTGGCTTAGGCATTCTGCCTCTCGGGCCGACTGAGTGCCC
64 AGCATGCAGGGGGACGGCTCGATCACTGACTTAGGCATTATGCCTCTCGGGCCGACTGAGCGCCC
* * * *
15947618 GCACGCTCGTTTCGTGGGATGGCTTAGGCATACAGAGTTCATTCCATGTGTAA
129 GCACGCTCGTTCCGTGGGATGACTTAGGCATACAGAGTTCATCCCATGTCTAA
** * *
15947671 GCATACAGAGTTCATTCCCAGTCTAAGATCGGTCCGGATCGAGGGTTGTGGCAGC-GAGACCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGT-GCAACAG-GATCGAC
* * * *
15947735 AGCATGCAGCGAGGGACCGAGCT-GATCCCTGACTTATGCATTATGCCTCTTC-GGTCGGCTGAG
64 AGCATGCAG-G-GGGA-CG-GCTCGATCACTGACTTAGGCATTATGCCTC-TCGGGCCGACTGAG
* * *
15947798 CGCCCTCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
124 CGCCCGCACGCTCGTTCCGTGGGATGACTTAGGCATACAGAGTTCAT-CCCATGTCTAA
* * * *
15947856 GCATA-TGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCTGCAACAGGATCGAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTG-TGCAACAGGATCGAC
15947920 AGCA
64 AGCA
15947924 CGTAAGGGGG
Statistics
Matches: 210, Mismatches: 31, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
181 1 0.00
182 58 0.28
183 2 0.01
184 7 0.03
185 133 0.63
186 9 0.04
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (181 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGCAACAGGATCGACAG
CATGCAGGGGGACGGCTCGATCACTGACTTAGGCATTATGCCTCTCGGGCCGACTGAGCGCCCGC
ACGCTCGTTCCGTGGGATGACTTAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:15948203 original size:26 final size:26
Alignment explanation
Indices: 15948173--15948225 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15948163 GTTGACTTAG
15948173 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15948199 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15948225 G
1 G
15948226 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15954789 original size:26 final size:26
Alignment explanation
Indices: 15954752--15954804 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15954742 GTTGACTTTG
15954752 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15954778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15954804 G
1 G
15954805 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15955163 original size:159 final size:158
Alignment explanation
Indices: 15954778--15955163 Score: 352
Period size: 159 Copynumber: 2.4 Consensus size: 158
15954768 CCCAGTCTAA
* * * *
15954778 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCGGCAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAG-A
* * * *
15954843 A-CACGTAGGGGTGACCGGGCCAATCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTCAGCAC
** *
15954907 CTGCACTCCCGTTTCGTGGGTTGGCTTAG
130 CTGCACTCAAGTTTCGTGGGTTGACTTAG
* * * ** ** ** *
15954936 GCATAGGGAGTTTATT-TCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATC-AG
* * * ** * * *
15954999 CAGCACGCAGAGGGGGATCGGGCCGAT-CCTCGGCTTTTGCATTATGCCTCTCCGATCGGCTCAG
64 AAGCACGCAG-GGGGGACCGGGCCAATCCCT-GGCTTGCGCATTATACCTCTCCGACCGACTCAG
** * *
15955063 TGCCTGCA-TGTAAGTTTTGTGGGTTGACTTAG
127 CACCTGCACT-CAAGTTTCGTGGGTTGACTTAG
* *
15955095 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAGGATC-GAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAGA-
15955159 AGCAC
65 AGCAC
15955164 ACTGAGTGCC
Statistics
Matches: 174, Mismatches: 45, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 55 0.32
159 112 0.64
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCAGAA
GCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATACCTCTCCGACCGACTCAGCACC
TGCACTCAAGTTTCGTGGGTTGACTTAG
Found at i:15955238 original size:26 final size:26
Alignment explanation
Indices: 15955202--15955254 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15955192 GTTGGCTTAG
15955202 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15955228 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15955254 G
1 G
15955255 AGTTTGAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15956396 original size:26 final size:26
Alignment explanation
Indices: 15956367--15956422 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15956357 GGGGTTGGCT
*
15956367 TAAGCATACGAAGTTTATT-CCATGTC
1 TAAGCATACGAAGTTCATTCCCA-GTC
*
15956393 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
15956419 TAAG
1 TAAG
15956423 ATCGGATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:15956752 original size:512 final size:513
Alignment explanation
Indices: 15955944--15956937 Score: 1320
Period size: 512 Copynumber: 1.9 Consensus size: 513
15955934 TCGAGGGTTG
* * * *
15955944 CAGCAGTAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCT
1 CAGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCT
* * *
15956009 CCTGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGCCTAGGCATAGGGAGTTCATTCCATG
66 CCAGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGCCTAGGCATAGGGAGTTCATTCCATG
** * * * *
15956074 TCTAAGCCCTGGCCGGACCGAGGGTTGGGGCAGCGGGACCCGATAGCATGCAGAGGGGGACCGGG
131 TCTAAGCCCCAGCCGAACCGAGGGTTGGGGCAGCGGGACCCGACAGCACGCAGAGGGGCACCGGG
* * * * *
15956139 TCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGGCTTAGAGCCCGTACGCTCATTTCATGGG
196 CCAATCCCCGACTTACACATTATGCCTCTCCGGTCGGCTCAGAGCCCGCACGCTCATTTCATGGG
*
15956204 TTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCA-CAGCA
261 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCATCAGCA
* * *
15956268 GGATCTACAGCACGCAGGGGGGACC-AGGCCGATCCCCAGCTTATGCTTTCTACCTC-TCTGACC
326 GGATCAACAGCACGCAGAGGGGACCGA-GCCGATCCCCAGCTTATGCATTCTACCTCTTC-GACC
* * * * *
15956331 GGTTGAGCGCCCACACATTTGTTTCAG-GGGTTGGCTTAAGCATACGAAGTTTATTCCATGTCTA
389 GGCTGAGCGCCCACACACTCGTTTC-GTGGGTTGGCCTAAGCATACGAAGTTCATTCCATGTCTA
*
15956395 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGACAGCAAGAC
453 AGAATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGACAGCAAGAC
*
15956456 CAGCAGCAGGATCGACAGCACGCAAGGGGGA-CAGGGAC-GATCCTCGACTTGCGCATTCTGCCT
1 CAGCAGCAGGATCGACAGCACGCAAGGGGGATC-GGG-CTGATCCCCGACTTGCGCATTCTGCCT
* * *
15956519 CTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTTGGCATAGGGAGTTCATTCC
64 CTCCAGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTT-GCCTAGGCATAGGGAGTTCATTCC
* * * * * *
15956584 ATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGTAGTGGGA-CTGACAGCACGCAGAGGGGCACT
128 ATGTCTAAGCCCCAGCCGAACCGAGGGTTGGGGCAGCGGGACCCGACAGCACGCAGAGGGGCACC
* * * * * ** *
15956648 GGGCCAATCCCTGGCTTACGCATTATGCCTC-CTTGGTCGGCTCAGTGCCCGCACGCTTGTTTCG
193 GGGCCAATCCCCGACTTACACATTATGCCTCTC-CGGTCGGCTCAGAGCCCGCACGCTCATTTCA
* * * * *
15956712 TGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTGCATT
257 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCATC
* * * * *
15956777 AGCAGGATCAACAGCACGTAGAGGGGATCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGG
322 AGCAGGATCAACAGCACGCAGAGGGGACCGAGCCGATCCCCAGCTTATGCATTCTACCTCTTCGA
* * * * *
15956842 CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCT
387 CCGGCTGAGCGCCCACACACTCGTTTCGTGGGTTGGCCTAAGCATACGAAGTTCATTCCATGTCT
15956907 AAGAATACGGAGTTCATTCCCAGTCTAAGAT
452 AAGAATACGGAGTTCATTCCCAGTCTAAGAT
15956938 TTTGAGCCAT
Statistics
Matches: 413, Mismatches: 61, Indels: 15
0.84 0.12 0.03
Matches are distributed among these distances:
511 2 0.00
512 216 0.52
513 192 0.46
514 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (513 bp):
CAGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCT
CCAGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGCCTAGGCATAGGGAGTTCATTCCATG
TCTAAGCCCCAGCCGAACCGAGGGTTGGGGCAGCGGGACCCGACAGCACGCAGAGGGGCACCGGG
CCAATCCCCGACTTACACATTATGCCTCTCCGGTCGGCTCAGAGCCCGCACGCTCATTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCATCAGCA
GGATCAACAGCACGCAGAGGGGACCGAGCCGATCCCCAGCTTATGCATTCTACCTCTTCGACCGG
CTGAGCGCCCACACACTCGTTTCGTGGGTTGGCCTAAGCATACGAAGTTCATTCCATGTCTAAGA
ATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGACAGCAAGAC
Found at i:15956887 original size:158 final size:158
Alignment explanation
Indices: 15956503--15956910 Score: 441
Period size: 159 Copynumber: 2.6 Consensus size: 158
15956493 CGATCCTCGA
* * * * *
15956503 CTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTTGGC
1 CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * ** ** *
15956568 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGTAGTGGGACTGACAGC
66 ATACGGAGTTCATTCCATGTCTAAG-ACCAGCAGAACCGAGGGTTGCAGTAGCAGGACTAACAGC
* **
15956633 ACGCAGAGGGGCACTGGGCCAATCCCTGG
130 ACGCAGAGGGGCACTGAGCCAATCCCCAG
* * * * * *
15956662 CTTACGCATTATGCCTCCTT-GGTCGGCTCAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTATG
1 CTTGCGCATTCTGCCT-CTTCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* *
15956726 CATACGGAGTTCATTCTCA-GTCTAAGATCAGATCAG-ACCGAGGGTTGCATTAGCAGGA-TCAA
65 CATACGGAGTTCATTC-CATGTCTAAGACCAG--CAGAACCGAGGGTTGCAGTAGCAGGACT-AA
* *
15956788 CAGCACGTAGAGGGG-A-TCGAGCCGATCCCCAG
126 CAGCACGCAGAGGGGCACT-GAGCCAATCCCCAG
* * *
15956820 CTTGTGCATTCTGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCCTAGGC
1 CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
15956885 ATACGGAGTTCATTCCATGTCTAAGA
66 ATACGGAGTTCATTCCATGTCTAAGA
15956911 ATACGGAGTT
Statistics
Matches: 205, Mismatches: 36, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
157 6 0.03
158 90 0.44
159 103 0.50
160 6 0.03
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGACCAGCAGAACCGAGGGTTGCAGTAGCAGGACTAACAGCA
CGCAGAGGGGCACTGAGCCAATCCCCAG
Found at i:15956921 original size:26 final size:26
Alignment explanation
Indices: 15956885--15956936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15956875 TGGCCTAGGC
15956885 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
15956911 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15956937 TTTTGAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:15957937 original size:159 final size:158
Alignment explanation
Indices: 15957681--15958140 Score: 581
Period size: 159 Copynumber: 2.9 Consensus size: 158
15957671 GACCGGACCA
* * *
15957681 AGGGTTGTGGCAGCAGGATCGACAGCACGA-AGGGGGACTGGGCCGATCCCTGGCTTGCGCATTC
1 AGGGTTGTGGCAGCGGGACCGACAGCACGAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTC
* * * * * * *
15957745 TGCCTCTCCGGTCGGCTGAACGTCCGCATGCCCGTTTCATGGGTTGCCTTAGACATAGGGAGTTC
66 TACCTCTCCGATCGGTTGAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
*
15957810 ATTCCATGTCTACGCCCCAGC-GAAACCG
131 ATTCCATGTCTAAGCCCCAGCTG-AACCG
* **
15957838 AGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGATTTGCGCATT
1 AGGGTTGTGGCAGCGGGACCGACAGCACG-AGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATT
* * *
15957903 CTACCTCTCCGATCGGTTGAGCACCCGCACGCCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTT
65 CTACCTCTCCGATCGGTTGAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
15957968 CATTCCATGTCTAAGCCCCAGCTGAACCG
130 CATTCCATGTCTAAGCCCCAGCTGAACCG
* * *
15957997 AGGGTTGTGGCAGTGGGACC-AGCAACACGTAGAGGGGGA-TCGGGCCGATCCCCGGCTTGCCCA
1 AGGGTTGTGGCAGCGGGACCGA-CAGCACG-AGAGGGGGACT-GGGCCGATCCCCGGCTTGCGCA
* * ** * *
15958060 TTTTACCTCTCAGGA-CGGTTGAACGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGA
63 TTCTACCTCTC-CGATCGGTTGAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
15958124 GTTCATTCCCA-GTCTAA
127 GTTCATT-CCATGTCTAA
15958141 AAGTTTGTGC
Statistics
Matches: 263, Mismatches: 33, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
157 27 0.10
158 3 0.01
159 227 0.86
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
AGGGTTGTGGCAGCGGGACCGACAGCACGAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTC
TACCTCTCCGATCGGTTGAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAGCCCCAGCTGAACCG
Found at i:15959140 original size:159 final size:159
Alignment explanation
Indices: 15958972--15959499 Score: 566
Period size: 158 Copynumber: 3.3 Consensus size: 159
15958962 GAGCACCCAT
* * * * *
15958972 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATT
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC
* * *
15959037 GAGGGTTGTGATAGCGGGACCGGTAGCACGCAGAAGGGGATCGCGTCGATCCCCAGCTTGCGCAT
66 GAGGGTTGTGGTAGCGGGATCGGTAGCACGCAGAGGGGGATCGCGTCGATCCCCAGCTTGCGCAT
* * *
15959102 TATGCCTCTCCGGCCAGCTCAGTGCCCGC
131 TCTGCCTCTCCGGCCAGCTGAGCGCCCGC
* * * * ** * * * *
15959131 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTGTAAGATCGAACCAGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGAT
* * * * **
15959195 CGAGGGTTGCGGTAGCAGGATCTGTTGCACGCA-AGGGGGATCGCGTCGATCCTTAGCTTGCGCA
65 CGAGGGTTGTGGTAGCGGGATCGGTAGCACGCAGAGGGGGATCGCGTCGATCCCCAGCTTGCGCA
* * *
15959259 TTCTGCCTCTCTGG-CAGGCTGAGCACCTGC
130 TTCTGCCTCTCCGGCCA-GCTGAGCGCCCGC
* *
15959289 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC
** * ** * * *
15959354 GAGGGTTGTGGTAGCGGTTTCGGCAGCACATAGAGGGGGAAT-G-GACCGATCCCCTGACTTTCG
66 GAGGGTTGTGGTAGCGGGATCGGTAGCACGCAGAGGGGG-ATCGCG-TCGATCCCCAG-CTTGCG
* * *
15959417 CATTCTGCCTCTCC-GCCGGCTGAGCG-TCGA
128 CATTCTGCCTCTCCGGCCAGCTGAGCGCCCGC
*
15959447 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15959500 ATACAGAGTT
Statistics
Matches: 296, Mismatches: 65, Indels: 17
0.78 0.17 0.04
Matches are distributed among these distances:
157 5 0.02
158 173 0.58
159 94 0.32
160 24 0.08
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (159 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATC
GAGGGTTGTGGTAGCGGGATCGGTAGCACGCAGAGGGGGATCGCGTCGATCCCCAGCTTGCGCAT
TCTGCCTCTCCGGCCAGCTGAGCGCCCGC
Found at i:15959499 original size:158 final size:157
Alignment explanation
Indices: 15958877--15959499 Score: 546
Period size: 158 Copynumber: 3.9 Consensus size: 157
15958867 CAGACCAGAC
* * ** * * *
15958877 CGAGGGTTGCGGTCAGCAGGATCGGCAGCACTTAGA-GGGGATTGAGCCGATCCCC-GACTTGCG
1 CGAGGGTTGTGGT-AGC-GGATCGGTAGCACGCAGAGGGGGATCGCGTCGATCCCCTGACTTGCG
* * * * * * * * *
15958940 TATTCTTCCTCTCTGATCGCCTGAGCACC-CATACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
64 CATTCTGCCTCTCCG-CCGGCTGAGCGCCGC--ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
15959004 GAGTTCATTCCATGTCTAAGCCCCAGTCGGAT
126 GAGTTCATTCCATGTCTAAGCCCCAGCCGGAT
* * * * *
15959036 TGAGGGTTGTGATAGCGGGACCGGTAGCACGCAGAAGGGGATCGCGTCGATCCCCAG-CTTGCGC
1 CGAGGGTTGTGGTAGC-GGATCGGTAGCACGCAGAGGGGGATCGCGTCGATCCCCTGACTTGCGC
* * * * * * *
15959100 ATTATGCCTCTCCGGCCAGCTCAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
65 ATTCTGCCTCTCC-GCCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* ** * * * *
15959165 GTTCATTCCCA-GTGTAAGATCGAACCAGAC
128 GTTCATT-CCATGTCTAAGCCCCAGCCGGAT
* * * *
15959195 CGAGGGTTGCGGTAGCAGGATCTGTTGCACGCA-AGGGGGATCGCGTCGAT--CCTTAGCTTGCG
1 CGAGGGTTGTGGTAGC-GGATCGGTAGCACGCAGAGGGGGATCGCGTCGATCCCCTGA-CTTGCG
* * * * *
15959257 CATTCTGCCTCTCTGGCAGGCTGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
64 CATTCTGCCTCTC-CGCCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
15959322 AGTTCATTCCATGTCTAAGCCCCAGCCGGAT
127 AGTTCATTCCATGTCTAAGCCCCAGCCGGAT
* * ** * *
15959353 CGAGGGTTGTGGTAGCGGTTTCGGCAGCACATAGAGGGGGAAT-G-GACCGATCCCCTGACTTTC
1 CGAGGGTTGTGGTAGCGG-ATCGGTAGCACGCAGAGGGGG-ATCGCG-TCGATCCCCTGACTTGC
* * *
15959416 GCATTCTGCCTCTCCGCCGGCTGAGCGTCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
63 GCATTCTGCCTCTCCGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
15959481 GTTCATTCCATGTCTAAGC
128 GTTCATTCCATGTCTAAGC
15959500 ATACAGAGTT
Statistics
Matches: 365, Mismatches: 82, Indels: 35
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 7 0.02
158 183 0.50
159 141 0.39
160 27 0.07
161 5 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (157 bp):
CGAGGGTTGTGGTAGCGGATCGGTAGCACGCAGAGGGGGATCGCGTCGATCCCCTGACTTGCGCA
TTCTGCCTCTCCGCCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGAT
Found at i:15959508 original size:26 final size:26
Alignment explanation
Indices: 15959472--15959524 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15959462 GTTGGCTTAG
* *
15959472 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCACTCCTA-GTCTAA
15959498 GCATACAGAGTTCACTCCTAGTCTAA
1 GCATACAGAGTTCACTCCTAGTCTAA
15959524 G
1 G
15959525 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCTAGTCTAA
Found at i:15960215 original size:26 final size:26
Alignment explanation
Indices: 15960179--15960231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15960169 GTTGACTTAG
15960179 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15960205 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15960231 G
1 G
15960232 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15960505 original size:157 final size:159
Alignment explanation
Indices: 15960205--15960718 Score: 402
Period size: 159 Copynumber: 3.2 Consensus size: 159
15960195 CCCAGTCTAA
* * **
15960205 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCTGGACCGTCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCTGGACCGTCA
* * * * *
15960270 GCACGCAGAGGAGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTTGATCGGCTCAGCAC
66 GCACGCAGAGGAGGACCAGGCCAATCCCCGACTTGCACATTATGCCTCTTAGATCGGCTCAGCAC
** * * *
15960335 CCGTATGCTCGTTTCATGGGTTGACTTAT
131 CCACACGCCCGTTTCATGGGTTGACTTAG
* *
15960364 GCATAC-GAAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAG-TAGGATCGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCT-GGA-CCG
* * * *
15960427 T-AGCATGCAG-GG-GGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCTAG-TCGGCTGA
63 TCAGCACGCAGAGGAGGACCAGGCCAATCCCCGACTTGCACATTATGCCTCT-TAGATCGGCTCA
*
15960488 GCACCCACACGCCCGTTTCATGGGTTGGCTTAG
127 GCACCCACACGCCCGTTTCATGGGTTGACTTAG
** * ** * * * * * **
15960521 GCATAGGGAGTTCATT-CCATATCTAAGCCCCA-ACCGGATCGAGGGTCG-AGGTAACGGGACTA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCA-GCAGCTGGACCG
* * * * * * ** * * *
15960583 ACAACACGCAGAGGGGGATCGGGCCGATCCTAGACTTGCGCATTATGCATCTCT-GA-CTGGCTT
63 TCAGCACGCAGAGGAGGACCAGGCCAATCCCCGACTTGCACATTATGCCTCT-TAGATC-GGCTC
* * * **
15960646 AGCAGCCGCACGCTCGTTTTGTGGGTTGACTTAG
126 AGCACCCACACGCCCGTTTCATGGGTTGACTTAG
* **
15960680 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
15960719 TAAAGATTGC
Statistics
Matches: 282, Mismatches: 57, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
156 5 0.02
157 109 0.39
158 13 0.05
159 149 0.53
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCTGGACCGTCA
GCACGCAGAGGAGGACCAGGCCAATCCCCGACTTGCACATTATGCCTCTTAGATCGGCTCAGCAC
CCACACGCCCGTTTCATGGGTTGACTTAG
Found at i:15961042 original size:26 final size:26
Alignment explanation
Indices: 15961006--15961058 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15960996 GTTGACTTAG
15961006 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15961032 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15961058 G
1 G
15961059 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15962204 original size:26 final size:26
Alignment explanation
Indices: 15962174--15962226 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15962164 GTTGGCTTAG
*
15962174 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15962200 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15962226 G
1 G
15962227 ATCATACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15962495 original size:13 final size:13
Alignment explanation
Indices: 15962477--15962502 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15962467 TGCACATTAT
15962477 GCCTCTCTGGTCG
1 GCCTCTCTGGTCG
15962490 GCCTCTCTGGTCG
1 GCCTCTCTGGTCG
15962503 ACTGAGCGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.31, T:0.31
Consensus pattern (13 bp):
GCCTCTCTGGTCG
Found at i:15962597 original size:24 final size:24
Alignment explanation
Indices: 15962544--15962591 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
15962534 GACTTAGGCA
15962544 TACGGAGTTCATCCCCAGTATAAG
1 TACGGAGTTCATCCCCAGTATAAG
* *
15962568 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTATAAG
15962592 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (24 bp):
TACGGAGTTCATCCCCAGTATAAG
Found at i:15963076 original size:26 final size:26
Alignment explanation
Indices: 15963040--15963092 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15963030 GTTGCCTTAG
15963040 GCATACGGAGTTCATTCC-ATATCTAA
1 GCATACGGAGTTCATTCCTA-ATCTAA
15963066 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
15963092 G
1 G
15963093 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAATCTAA
Found at i:15963703 original size:11 final size:11
Alignment explanation
Indices: 15963687--15963713 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15963677 GTCGAGGCAC
15963687 CATCGTCGGAG
1 CATCGTCGGAG
15963698 CATCGTCGGAG
1 CATCGTCGGAG
15963709 CATCG
1 CATCG
15963714 CCGAAGAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15964835 original size:26 final size:26
Alignment explanation
Indices: 15964799--15964851 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15964789 GTTGGCTTAG
15964799 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
15964825 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15964851 G
1 G
15964852 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15964988 original size:184 final size:183
Alignment explanation
Indices: 15964640--15965194 Score: 652
Period size: 184 Copynumber: 3.0 Consensus size: 183
15964630 GTTGACTTAG
* * * * * *
15964640 GCATATCGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * * * *
15964705 GCATGCAGGGAGGGACTAGGTCGATCCCCGACTTACGCATTCAGCCTCTCCGATCGACTAAGCGC
66 GCACGCAGGG-GGGACTGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGC-C
* *
15964770 CTGCACGCTCATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
129 CCGCACGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
* * * * *
15964825 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGTAGGATCGGTA
1 GCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * *
15964890 GCACGCAGGGGGGATTGGGTCGATCCCCCG-CTTACGAATTCTGCCTCTCCGACCGACTGAGCAT
66 GCACGCAGGGGGGACTGGGTCGAT-CCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGC-C
* * * * *
15964954 CCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTAATCCCCA-GTCTAA
129 CCGCACGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGTCTAA
* *
15965009 GCATACAGAGTTCATTCCCAGTCTAAGATCTA-ATCGGACTGAGGGTTGCGGCAGTAGGATCAGC
1 GCATATAGAGTTCATTCCCAGTCTAAGATC-AGATCGGACTGAGGGTTGCGGCAGTAGGATCGGC
* * * * *
15965073 AGCACGCATGGGGGACCGGG-CTGATCCCCGACTTACGCATTCTGCCTCTCTGGCCGATTGAGCG
65 AGCACGCAGGGGGGACTGGGTC-GATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGC-
* * * * *
15965137 CCCGCACGCCCATTTCGTTGGTTGGCTTAAGCATA-GAAAGTTCATTCCATATCTAA
128 CCCGCACGCTCATTTCGTCGGTTGGCTTAGGCATATG-GAGTTCATTCCATGTCTAA
15965193 GC
1 GC
15965195 CCCAGTCAGA
Statistics
Matches: 312, Mismatches: 51, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
183 10 0.03
184 229 0.73
185 73 0.23
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (183 bp):
GCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGTAGGATCGGCA
GCACGCAGGGGGGACTGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCCCC
GCACGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
Found at i:15965535 original size:26 final size:26
Alignment explanation
Indices: 15965506--15965557 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15965496 GTTGACTTAG
*
15965506 GCATAC-GAAGTTTATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
15965532 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15965558 AAGGGTTGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15966001 original size:158 final size:158
Alignment explanation
Indices: 15965609--15966019 Score: 436
Period size: 159 Copynumber: 2.6 Consensus size: 158
15965599 GCCGATCCTC
* * * *
15965609 GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCATGCACATTTCGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** ** * ** *
15965674 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGCGGGACCGACA
65 GCATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGTTGCAGCAGCAAGACCGAAA
* *
15965739 GCACGCAGAGGGGGATCGGGCCGATCCCCA
130 ACACGCAGAGGGGGATCGAGCCGA-CCCCA
* * ** * * ** * *
15965769 -ACTTGCGCATTATGCCTCTCCGGTCGGCCCAGCGCTCGGACGCTCGTTTTATTGGTTGACTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC-CGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
15965833 TCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCGA
65 GCATAGGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCAAGGGTTGCAGCAGCAAGACCGA
*
15965896 AAACACGCAG-GGTGGATCGAGCCAGA-CCCA
128 AAACACGCAGAGGGGGATCGAGCC-GACCCCA
*
15965926 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGACCGCACACTCATTTCGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG-CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
15965991 GCATAGGGAGTTAATTCCATGTCTAAGCA
65 GCATAGGGAGTTCATTCCATGTCTAAGCA
15966020 TATGGAGTTC
Statistics
Matches: 199, Mismatches: 44, Indels: 17
0.77 0.17 0.07
Matches are distributed among these distances:
157 7 0.04
158 86 0.43
159 103 0.52
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCGCACGCTCATTTCGTGGGTTGGCTTAGG
CATAGGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGTTGCAGCAGCAAGACCGAAAA
CACGCAGAGGGGGATCGAGCCGACCCCA
Found at i:15966027 original size:26 final size:26
Alignment explanation
Indices: 15965991--15966043 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15965981 GTTGGCTTAG
15965991 GCATAGGGAGTTAATTCC-ATGTCTAA
1 GCATAGGGAGTTAATTCCTA-GTCTAA
* *
15966017 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTAATTCCTAGTCTAA
15966043 G
1 G
15966044 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTAATTCCTAGTCTAA
Found at i:15966569 original size:526 final size:514
Alignment explanation
Indices: 15965589--15966616 Score: 1298
Period size: 526 Copynumber: 2.0 Consensus size: 514
15965579 GCAGCACGCA
* * * *
15965589 GGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCATGCA
1 GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCA
* *
15965654 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGG
66 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGG
* * *
15965719 TTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATTATGC
131 TTGCGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCAACTTGCGCATTATGC
* * * * * * *
15965784 CTCTCCGGTCGGCCCAGCGCTCGGACGCTCGTTTTATTGGTTGACTTAGTCATACGGAGTTCATT
196 CTCTCCGCTCGGCCCAGCGCCCGCACGCTCATTTTATGGGTTGAATTAGGCATACGGAGTTCATT
*
15965849 CCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCGAAAACACGCAGGGTGGATC
261 CCAAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCGAAAACACGCAGGGTGGATC
** *
15965914 GAGCCAGACCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGACCGCACACTCATTTCGT
326 GAGCCAGACCCAGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGACCGCACACTCATTTCGT
* * * * *
15965979 GGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAG
391 GCGTTGGCTTAGGCATACGGAGTTAATTACATGTCTAAGCATACGAAGTTCATTCCTAGTCTAAG
* * *
15966044 ATC-GAACCAGATCAAGGGTTGCGATAGCAGGACTAGCAGCAGCATCGGCTACATGCAGG
456 ATCAG-ACCAGATCAAGGGTTACGATAGCAGGACCAGCAACAGCATCGGCTACATGCAGG
* * * *
15966103 GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCTGGTCGGCTGAGTGCCCGCACGCA
1 GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCA
* * * *
15966168 CGTTTCATGGGTTGGCTTAGGCATTGGGTGTTCATTCCATGTCTAAGCCCCAATCGGA-TCGAGG
66 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACT-GAGG
* **
15966232 GTTGCGGCAGCGGGACCGACGGCGGGACCGGCAGCATGCAGAGGGGGATCAGGCTGATCCCCTGC
130 GTTGCGGCAGCGGGACCGA---C---A---GCA-C--GCAGAGGGGGATCAGGCCGATCCCCAAC
* * *
15966297 TTGCGCATTATGCCTCTCCGACT-GGCTCAGTGCCCGCATGCTCATTTTATGGGTTGAATTAGGC
183 TTGCGCATTATGCCTCTCCG-CTCGGCCCAGCGCCCGCACGCTCATTTTATGGGTTGAATTAGGC
* * ** * * * *
15966361 ATACGGAGTTCATTCCAAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGACAGC
247 ATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCGAAAAC
* * *
15966426 ACGCAGGG-GCGATCG-GACCGGTCCTCA-GCTTGCGCATTCTGCCTCTTTC-ACCGACTGAGC-
312 ACGCAGGGTG-GATCGAG-CCAGACC-CAGGCTTGCGCATTCTGCCTC-TCCGACCGACTGAGCG
* * *
15966486 ACCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATACGA
373 A-CCGCACACTCATTTCGTGCGTTGGCTTAGGCATACGGAGTTAATTACATGTCTAAGCATACGA
* *
15966551 AGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTACGGTAGCAGGACCAGCAACAGCATC
437 AGTTCATTCCTAGTCTAAGATCAGACCAGATCAAGGGTTACGATAGCAGGACCAGCAACAGCATC
15966616 G
502 G
15966617 ATAGCACACA
Statistics
Matches: 436, Mismatches: 58, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
513 1 0.00
514 130 0.30
517 1 0.00
520 1 0.00
523 3 0.01
524 1 0.00
525 3 0.01
526 290 0.67
527 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (514 bp):
GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCA
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGG
TTGCGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCAACTTGCGCATTATGC
CTCTCCGCTCGGCCCAGCGCCCGCACGCTCATTTTATGGGTTGAATTAGGCATACGGAGTTCATT
CCAAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCGAAAACACGCAGGGTGGATC
GAGCCAGACCCAGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGACCGCACACTCATTTCGT
GCGTTGGCTTAGGCATACGGAGTTAATTACATGTCTAAGCATACGAAGTTCATTCCTAGTCTAAG
ATCAGACCAGATCAAGGGTTACGATAGCAGGACCAGCAACAGCATCGGCTACATGCAGG
Found at i:15966863 original size:26 final size:26
Alignment explanation
Indices: 15966833--15966884 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15966823 TTGGCTTAGT
**
15966833 CATATGGAGTTCATTCCTTGTCTAAG
1 CATATGGAGTTCATTCCCAGTCTAAG
15966859 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATGGAGTTCATTCCCAGTCTAAG
15966885 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAGTCTAAG
Found at i:15967106 original size:26 final size:26
Alignment explanation
Indices: 15967077--15967129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15967067 CATGGCTTAG
15967077 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15967103 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15967129 G
1 G
15967130 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15967630 original size:26 final size:26
Alignment explanation
Indices: 15967600--15967652 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15967590 GTTGGCTTAG
15967600 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15967626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15967652 G
1 G
15967653 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15968352 original size:26 final size:26
Alignment explanation
Indices: 15968323--15968375 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15968313 GTTGACTTAG
15968323 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15968349 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15968375 G
1 G
15968376 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15968556 original size:160 final size:161
Alignment explanation
Indices: 15968381--15968681 Score: 358
Period size: 161 Copynumber: 1.9 Consensus size: 161
15968371 CTAAGATCGG
** * * * ** *
15968381 ACCGGACTGAGGGTTGCGACAGCAGGATCAATAGCACGTAG-GGGGGACTG-GGTCGATCCTCGG
1 ACCGGACCAAGGGTTGCGACAGCAGGACCAACAGCACGTAGAGGGGGACCGAACT-GATCCTCGA
* * * *
15968444 CTTGCGCATTCTGCCTCTCCGATCGG-TCGAGCACCCGCACGC-CTATTTCATGGGTTGGCTTAG
65 CTTGCGCATTATGCCTCTCCGACCGGCTC-AGCACCCACACGCTC-ATTTCATGGGTTGACTTAG
**
15968507 GCATAGGGAGTTCACATTCCATGTCTAAGCCCCA
128 GCATACAGAGTTCACATTCCATGTCTAAGCCCCA
* * * **
15968541 ACCGGACCAAGGGTTGTGGCAGCTGGACCGGCAGCACGTAGAGGGGGACCGAACTGATCCTCGAC
1 ACCGGACCAAGGGTTGCGACAGCAGGACCAACAGCACGTAGAGGGGGACCGAACTGATCCTCGAC
* *
15968606 TTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCATACGCTCATTTCGTGGGTTGACTTAGGCA
66 TTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCA
15968671 TACAGAGTTCA
131 TACAGAGTTCA
15968682 TTCCCAATCT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
160 32 0.28
161 80 0.69
162 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (161 bp):
ACCGGACCAAGGGTTGCGACAGCAGGACCAACAGCACGTAGAGGGGGACCGAACTGATCCTCGAC
TTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCA
TACAGAGTTCACATTCCATGTCTAAGCCCCA
Found at i:15968864 original size:26 final size:26
Alignment explanation
Indices: 15968828--15968879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15968818 TTAGCTTAGT
15968828 CATACAGAGTTCATTCC-ATGTCTAAG
1 CATACAGAGTTCATTCCTA-GTCTAAG
*
15968854 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCTAGTCTAAG
15968880 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAG
Found at i:15969245 original size:26 final size:26
Alignment explanation
Indices: 15969205--15969260 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15969195 TGGGTTGACT
15969205 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* *
15969231 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
15969257 TAAG
1 TAAG
15969261 ATCGGATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:15969686 original size:157 final size:154
Alignment explanation
Indices: 15969231--15969730 Score: 449
Period size: 157 Copynumber: 3.2 Consensus size: 154
15969221 ATCCCCAGTC
* ** * *
15969231 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTCCGATAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGAAGGATCG
* * *
15969296 ACAGCACGCAGGGGGGAC-CGGCCGATCCTC-AGCTTGCGCATTCTGCCTCTCCAACGGCTGAGT
66 ACAGCACG-A-GGGGGACTCGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACGGCTGAGC
*
15969359 GCCCGCACGTCCGTTTCGTGGGTTGGCT
128 GCCCGCACCT-CGTTTCGTGGGTTGGCT
* * * ** * * * * *
15969387 TAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGTCGGATCGAGGATTGTGGTAGTAGGAC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACT-GGACCGAGGGTTGTGGTAGAAGGAT
* * * * *
15969450 CGACAGCACACAGAGGGGGA-TCGGGCTGAT-CCCGACTTGCGCATTATTCCTCTCCGACTAGCA
64 CGACAG--CAC-GAGGGGGACTC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC-GGCT
* * *
15969513 CAGCGCCCGTC-GCTCGTTTCGTGGGTTGACT
124 GAGCGCCCG-CACCTCGTTTCGTGGGTTGGCT
* *
15969544 TAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGTAGAAGGATTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGAAGGATCG
* * * * * *
15969609 ACAGCACGTAGGGGGACTAGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCA
66 ACAGCACG-AGGGGGACTCGGCCGATCCCCGACTTGCGCATTCTGCCTC-TCCGACGGCTGAGCG
* *
15969674 CCCGCACACTCGTTTTGGGGGTTGGCT
129 CCCGCAC-CTCGTTTCGTGGGTTGGCT
* *
15969701 TAGGCATACGGAGTTAATT-CCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG
15969731 CATATGGAGT
Statistics
Matches: 269, Mismatches: 56, Indels: 37
0.74 0.15 0.10
Matches are distributed among these distances:
154 1 0.00
155 22 0.08
156 80 0.30
157 137 0.51
158 27 0.10
159 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGAAGGATCG
ACAGCACGAGGGGGACTCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACGGCTGAGCGCC
CGCACCTCGTTTCGTGGGTTGGCT
Found at i:15969954 original size:26 final size:26
Alignment explanation
Indices: 15969917--15969969 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15969907 GTTGACTTAC
15969917 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15969943 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15969969 G
1 G
15969970 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15970407 original size:709 final size:702
Alignment explanation
Indices: 15969093--15970911 Score: 1996
Period size: 709 Copynumber: 2.6 Consensus size: 702
15969083 CCAGCAACGA
* * * * * * *
15969093 GATCGACAACACGCAAAGGGGGATCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTTCGACCGG
1 GATCGACAGCACACAGAGGGGGACCGAGCTGATCCCCAGCTT-CGCATTATGCCTC-TCGACTGG
* * * *
15969158 CCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCAT
64 CCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATACG-AGTTCAT
* *
15969223 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTCCGATAG
128 CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC-GA-T-GACCGAGGGTTCCGACAG
* * **
15969288 CAGGATCGACAGCACGCAGGGGGGACCGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCAACGG
190 CAGGATCGACAGCACGCAGGGGGGACGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCGG
* * *
15969353 -CTGAGTGCCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
255 AATGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * * * *
15969417 CCCTAGTCGGATCGAGGATTGTGGTAG-TAGGACCGACAGCACACAGAGGGGGATCGGG-CTGAT
320 CCCCAGTCGGACCGAGGGTTGTGGCAGCGA-GACCGACAGCACGCAGAGGGGGACCGGGCCT-AT
* * * * * *
15969480 -CCCGACTTGCGCATTATTCCTCTCCGACTAGCACAGCGCCCGTCGCTCGTTTCGTGGGTTGACT
383 CCCCGGCTTGCGCATTATGCCTCTCCGACCAGCACAACCCCCGTCGCTCGTTTCATGGGTTGACT
* * ** * *
15969544 TAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGTAGAAGGATTG
448 TAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGTGGCAGAAGGATTG
* * * * ** * *
15969609 ACAGCACGTAGGGGGACTAGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCA
513 ACAGCACGCAGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGACTAAACA
* *
15969674 CCCGCACACTCGTTTTGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGA
578 CCCGCACACTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGA
* * * *
15969739 GTTCATTCCCAGCATACGAAGCCCCAGCCAGACCGA-GTGTTATGGCAGCAA-GACCG-GTAGCA
643 GTTCATTCCCAG--T-CGAAGACCCAGCCAGACCGAGGT-TTACGGCA-AAAGGA-CGAGCAGCA
15969801 G
702 G
* * *
15969802 GATCGGCAGCACATAGAGGGGGACCGAGCTGATCCCCAGCTTATGCATTATGCCTCTCCGACTGG
1 GATCGACAGCACACAGAGGGGGACCGAGCTGATCCCCAGCTT-CGCATTATGCCTCT-CGACTGG
* *
15969867 CCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTACGCATACAGAGTTCAT
64 CCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATAC-GAGTTCAT
* * **
15969932 CCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC-A-GACCGAGGGTTTCGACAGTTG
128 CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGATGACCGAGGGTTCCGACAGCAG
* * * *
15969995 GATCGACAGCACGCAGGGGGGATCGGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCTGGTGGAA
193 GATCGACAGCACGCAGGGGGGA-CGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCGGAA
* * * * *
15970060 TGAGCACCCGTACGCCCGTTTTGTGGGTTAGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCC
257 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* *
15970125 CCAGCCGGACCGAGGGTTATGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCTATCCCC
322 CCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCTATCCCC
* * * * *
15970190 GGCTTGCACATTATGCCTCTTCGGCCAGCTCAACCCCCGAAT-GCTCGTTTCATGGGTTGATTTA
387 GGCTTGCGCATTATGCCTCTCCGACCAGCACAACCCCCG--TCGCTCGTTTCATGGGTTGACTTA
* *
15970254 GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAA-GATTGA
450 AGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGTGGCAG-AAGGATTGA
* * * * **
15970318 CAGCACGCAGGGGAGACCGGGTCGGTCCTCGGCTTGCGCATTCTACCTCTTCGGCCGACTAAATG
514 CAGCACGCAGGGG-GACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGACTAAACA
* * * *
15970383 CCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTAATTCCATGTCTAAGCATATGGA
578 CCCGCACACTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGA
* * ** *
15970448 GTTCATTCCCAGTCTAAGATCGGGCCGGACCGAGGTTTACGGCAAAAGGACGAGCAGCAG
643 GTTCATTCCCAGTCGAAGACCCAGCCAGACCGAGGTTTACGGCAAAAGGACGAGCAGCAG
* * ** *
15970508 GATCGACAGCACACAGGGGGGGACCGAGAC-GAT---C--CTTGGC-TTGCGCAT-T---CT-GC
1 GATCGACAGCACACAGAGGGGGACCGAG-CTGATCCCCAGCTTCGCATTATGCCTCTCGACTGGC
* * *
15970561 CTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATC
65 CTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATAC-GAGTTCATC
* * *
15970626 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCTAATCGGACCGAGGGTTGC-AGCAG
129 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC-GAT--GACCGAGGGTTCCGA-CAG
* * *** ** * * * * *
15970690 CAAGATCAACAGCGTACAGGGGGGACTGGGTTGATCCCCGGTTTGCGTATTCTACCTCTCCGGCC
190 CAGGATCGACAGCACGCAGGGGGGAC-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCG
* * * **
15970755 GATTGGGCGCCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
254 GAATGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * ** *
15970820 GCCCCAGTCAGACCGAGGGTTGT-GCTAGCGGGACTGACAGCACGCAGAGGTGGACTAGGCCAAT
319 GCCCCAGTCGGACCGAGGGTTGTGGC-AGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCTAT
** *
15970884 CTTCGGCTTGCGCATTCTGCCTCTCCGA
383 CCCCGGCTTGCGCATTATGCCTCTCCGA
15970912 TCGGCTGAGC
Statistics
Matches: 933, Mismatches: 154, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
693 100 0.11
694 2 0.00
695 1 0.00
697 4 0.00
698 190 0.20
699 5 0.01
700 2 0.00
701 3 0.00
703 1 0.00
704 39 0.04
705 36 0.04
706 162 0.17
707 41 0.04
708 86 0.09
709 260 0.28
710 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (702 bp):
GATCGACAGCACACAGAGGGGGACCGAGCTGATCCCCAGCTTCGCATTATGCCTCTCGACTGGCC
TCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATACGAGTTCATCCC
CAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGATGACCGAGGGTTCCGACAGCAGGAT
CGACAGCACGCAGGGGGGACGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCGGAATGAG
CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
TCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCTATCCCCGGCT
TGCGCATTATGCCTCTCCGACCAGCACAACCCCCGTCGCTCGTTTCATGGGTTGACTTAAGCATA
CGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGTGGCAGAAGGATTGACAGCACG
CAGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGACTAAACACCCGCACA
CTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGAGTTCATTC
CCAGTCGAAGACCCAGCCAGACCGAGGTTTACGGCAAAAGGACGAGCAGCAG
Found at i:15970417 original size:158 final size:159
Alignment explanation
Indices: 15970082--15970441 Score: 377
Period size: 158 Copynumber: 2.3 Consensus size: 159
15970072 CGCCCGTTTT
* * * * * *
15970082 GTGGGTTAGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAAGGTTATGG
* * * *
15970147 CAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCTATCCCCGGCTTGCACATTATGCCTCTTC
66 CAGCAAGACCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTTC
* * *
15970212 GGCCAGCTCAACCCCCGAATGCTCGTTTC
131 GGCCAGCTAAACCCCCGAACGCTCATTTC
* ** * * *
15970241 ATGGGTTGATTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAAGGTTGT
1 GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCGAAGGTTAT
** * * * * *
15970304 GGCAGCAAGATTGACAGCACGCAG-GGGAGACCGGGTCGGTCCTCGGCTTGCGCATTCTACCTCT
64 GGCAGCAAGACCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCT
** * *
15970368 TCGGCC-GACTAAATGCCTGCACGCTCATTTC
129 TCGGCCAG-CTAAACCCCCGAACGCTCATTTC
* *
15970399 GTGGGTTGGCTTAGGCATATGGAGTTAATTCCATGTCTAAGCA
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15970442 TATGGAGTTC
Statistics
Matches: 160, Mismatches: 36, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.03
158 88 0.55
159 65 0.41
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAAGGTTATGG
CAGCAAGACCGACAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTTC
GGCCAGCTAAACCCCCGAACGCTCATTTC
Found at i:15970449 original size:26 final size:26
Alignment explanation
Indices: 15970413--15970465 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15970403 GTTGGCTTAG
15970413 GCATATGGAGTTAATT-CCATGTCTAA
1 GCATATGGAGTTAATTCCCA-GTCTAA
*
15970439 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
15970465 G
1 G
15970466 ATCGGGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTAATTCCCAGTCTAA
Found at i:15970647 original size:26 final size:26
Alignment explanation
Indices: 15970610--15970662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15970600 GTTGACTTAG
*
15970610 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15970636 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15970662 G
1 G
15970663 ATCTAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15970946 original size:698 final size:699
Alignment explanation
Indices: 15969156--15970979 Score: 1977
Period size: 698 Copynumber: 2.6 Consensus size: 699
15969146 CTCTTCGACC
* * * * *
15969156 GGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTC
1 GGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTC
* *
15969221 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTCCGAT
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC--A-TGGACCGAGGGTT-CGAC
* * *
15969286 AGCAGGATCGACAGCACGCAGGGGGGAC-CGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCC-A
127 AGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGG
** *
15969349 ACGGCTGAGTGCCCGCACG-TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
192 ACGAATGAGCGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * * ** * *
15969413 TAAGCCCTAGTCGGATCGAGGATTGTGGTAGTAGGACCGACAGCACACAGAGGGGGA-TCGGGCT
256 TAAGCCCCAGTCGGACCGAGGGTTGTGCTAGCGGGACCGACAGCACGCAGAGGGGGACT-GGGCC
* * * * *
15969477 GATCCCGACTTGCGCATTATTCCTCTCCGACTAGCACAGCGCCCGTCGCTCGTTTCGTGGGTTGA
320 AATCCCGGCTTGCGCATTATGCCTCTCCGAC-AGCTCAGCGCCCGACGCTCGTTTCGTGGGTTGA
* * * ** * *
15969542 CTTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTGGTAGAAGGAT
384 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGAAGGAT
* * * * ** * *
15969607 TGACAGCACGTAGGGGGACTAGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAG
449 TGACAGCACGCAGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGACTAAA
* *
15969672 CACCCGCACACTCGTTTTGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATG
514 CACCCGCACACTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATG
* * * *
15969737 GAGTTCATTCCCAGCATACGAAGCCCCAGCCAGACCGAGTGTTATGGCAGCAAGACCGGTAGCAG
579 GAGTTCATTCCCAG-ATACGAAGACCCAGCCAGACCGAGTGTTACGGCAGAAAGACCGGCAGCAG
* * * * *
15969802 GATCGGCAGCACATAGAGGGGGACCGAGCTGATCCCCAGCTTATGCATTATGCCTCTCCGACT
643 GATCGACAGCACACAGAGGGGGACCGAGCTGAT--CCA-CTTAGGCATTACGCATCT-C--CT
* * *
15969865 GGCCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTACGCATACAGAGTTC
1 GGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTC
* *
15969930 ATCCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA--GACCGAGGGTTTCGACAGT
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCATGGACCGAGGG-TTCGACAGC
* * * * **
15969993 TGGATCGACAGCACGCAGGGGGGA-TCGGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCTGGTG
130 AGGATCGACAGCACGCAGGGGGGACT-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGAC
* * * * * *
15970057 GAATGAGCACCCGTACGCCCGTTTTGTGGGTTAGCTTAGCCATAGGGAGTTCATTCCATGTCTAA
194 GAATGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * *
15970122 GCCCCAGCCGGACCGAGGGTTATGGC-AGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCTAT
259 GCCCCAGTCGGACCGAGGGTTGT-GCTAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCCAAT
* * * * * * * *
15970186 CCCCGGCTTGCACATTATGCCTCTTCGGCCAGCTCAACCCCCGAATGCTCGTTTCATGGGTTGAT
323 -CCCGGCTTGCGCATTATGCCTC-TCCGACAGCTCAGCGCCCG-ACGCTCGTTTCGTGGGTTGAC
*
15970251 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAA-GAT
385 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAG-AAGGAT
* * * *
15970315 TGACAGCACGCAGGGGAGACCGGGTCGGTCCTCGGCTTGCGCATTCTACCTCTTCGGCCGACTAA
449 TGACAGCACGCAGGGG-GACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGACTAA
** * * * *
15970380 ATGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTAATTCCATGTCTAAGCATAT
513 ACACCCGCACACTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATAT
* * ** *
15970445 GGAGTTCATTCCCAG-T-CTAAGATCGGGCCGGACCGAG-GTTTACGGCA-AAAGGA-CGAGCAG
578 GGAGTTCATTCCCAGATACGAAGACCCAGCCAGACCGAGTG-TTACGGCAGAAA-GACCG-GCAG
* *
15970505 CAGGATCGACAGCACACAGGGGGGGACCGAGAC-GAT-C-CTT-GGC-TTGCGCAT-T-CT
640 CAGGATCGACAGCACACAGAGGGGGACCGAG-CTGATCCACTTAGGCATTACGCATCTCCT
* * *
15970559 -GCCTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
1 GGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTC
*
15970623 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCTAATCGGACCGAGGGTT-GCAG
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC--AT-GGACCGAGGGTTCG-A-
* * *** ** * * * *
15970687 CAGCAAGATCAACAGCGTACAGGGGGGACTGGGTTGATCCCCGGTTTGCGTATTCTACCTCTCCG
126 CAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
* * * * *
15970752 GCCGATTGGGCGCCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
191 GACGAATGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * *
15970817 TAAGCCCCAGTCAGACCGAGGGTTGTGCTAGCGGGACTGACAGCACGCAGAGGTGGACTAGGCCA
256 TAAGCCCCAGTCGGACCGAGGGTTGTGCTAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCCA
* * * * *
15970882 ATCTTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTG
321 ATC-CCGGCTTGCGCATTATGCCTCTCCGA-CAGCTCAGCGCCCG-ACGCTCGTTTCGTGGGTTG
* * *
15970947 GCTTAGCCATAAGGAGTTCATT-CCATGTCTAAG
383 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
15970980 CATACGGAGT
Statistics
Matches: 926, Mismatches: 161, Indels: 67
0.80 0.14 0.06
Matches are distributed among these distances:
693 100 0.11
694 2 0.00
695 1 0.00
696 1 0.00
697 12 0.01
698 233 0.25
699 6 0.01
700 2 0.00
701 3 0.00
703 1 0.00
704 37 0.04
705 36 0.04
706 161 0.17
707 33 0.04
708 89 0.10
709 209 0.23
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (699 bp):
GGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTC
ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCATGGACCGAGGGTTCGACAGCA
GGATCGACAGCACGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGA
ATGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACCGAGGGTTGTGCTAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCCAATCCC
GGCTTGCGCATTATGCCTCTCCGACAGCTCAGCGCCCGACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGAAGGATTGACAGC
ACGCAGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGACTAAACACCCGC
ACACTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGAGTTCA
TTCCCAGATACGAAGACCCAGCCAGACCGAGTGTTACGGCAGAAAGACCGGCAGCAGGATCGACA
GCACACAGAGGGGGACCGAGCTGATCCACTTAGGCATTACGCATCTCCT
Found at i:15971965 original size:159 final size:158
Alignment explanation
Indices: 15971799--15972161 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 158
15971789 CGCACGCCCA
* *
15971799 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCTCCA-G-CCGAACAGA-AG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCT--AGGACCGAACAGAGA-
* ** * * * * *
15971861 GTTGTGGCAACGGGACCGGTAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCACATTATG
63 GTTGCGGCAACAAGACCGATAGCACGTAG-GGGGAACCGGACCGATCCCCGACTTGCACATTATG
*
15971926 ACTCTCCAGCCGGCTCAGCGCCCA-AACTCTCG
127 ACTCTCCAGCCGGCTCAGCG-CCAGAACGCTCG
* * * * * *
15971958 TTTCGTGGGTTGACTTAGGTATACGAAGTTCATTCCCA-GTCTAAGATAGGACCGGACCGAGAGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTAGGACCGAACAGAGAGT
* * * * * * *
15972022 TGCGGCAGCAAGATCGATAGTACGTAGGGGGAACCGGACCGGTCCCCGACTTGCTCATTCTGCCT
65 TGCGGCAACAAGACCGATAGCACGTAGGGGGAACCGGACCGATCCCCGACTTGCACATTATGACT
* * *
15972087 CTCCAGCTGGCTGAGCGCCAGCACGCTCG
130 CTCCAGCCGGCTCAGCGCCAGAACGCTCG
* *
15972116 TTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15972162 ATACGAAGTT
Statistics
Matches: 165, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.04
158 88 0.53
159 67 0.41
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTAGGACCGAACAGAGAGTT
GCGGCAACAAGACCGATAGCACGTAGGGGGAACCGGACCGATCCCCGACTTGCACATTATGACTC
TCCAGCCGGCTCAGCGCCAGAACGCTCG
Found at i:15972164 original size:26 final size:26
Alignment explanation
Indices: 15972134--15972186 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972124 GTTAGCTTAG
*
15972134 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
15972160 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15972186 G
1 G
15972187 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15972361 original size:26 final size:26
Alignment explanation
Indices: 15972331--15972383 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972321 GTTGACTTAG
15972331 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
15972357 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15972383 G
1 G
15972384 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15972711 original size:159 final size:159
Alignment explanation
Indices: 15972497--15972860 Score: 365
Period size: 159 Copynumber: 2.3 Consensus size: 159
15972487 AGAACGCCCG
* * *
15972497 TTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCGAAGCCCCAGTCGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAAGCCCCAGTCGGACTGAGGGTT
** * * * * *
15972562 GTGGCAGCGGGATCGACAGCACACAAATGGGGACCCGACCAATCCCCGACTTGCT-TATTATGCC
66 ACGACAGCAGGATCGACAGCACACAAAGGGGGACCCGACCAATCCCCGACTTG-TGCATTATACC
** * * * *
15972626 TCTTTGGCTAGCTCAGTGCCCGTACGCTCA
130 TCTCCGACCAGCTCAGCGCCCGCACGCTCA
* ** * *
15972656 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCAAAG-ATCGGATCGGACTGTGGG
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCAAAGCCCCAG-TCGGACTGAGGG
* * ** * ** * * *
15972719 TTACGATAGCAGGATGGACAGCACGTAAGGGGGGACTGGGCCGATCCCCGACTTGTGCATTCTAC
64 TTACGACAGCAGGATCGACAGCACACAAAGGGGGACCCGACCAATCCCCGACTTGTGCATTATAC
* *
15972784 CTCTCCGACCAGCTGAGCGCCCGCACGCTCG
129 CTCTCCGACCAGCTCAGCGCCCGCACGCTCA
* *
15972815 TTTCGTGAGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAAGC
15972861 ATACGGAGTT
Statistics
Matches: 164, Mismatches: 36, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
158 4 0.02
159 159 0.97
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAAGCCCCAGTCGGACTGAGGGTT
ACGACAGCAGGATCGACAGCACACAAAGGGGGACCCGACCAATCCCCGACTTGTGCATTATACCT
CTCCGACCAGCTCAGCGCCCGCACGCTCA
Found at i:15972869 original size:26 final size:26
Alignment explanation
Indices: 15972833--15972885 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972823 GTTGGCTTAG
15972833 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15972859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15972885 G
1 G
15972886 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15973022 original size:698 final size:698
Alignment explanation
Indices: 15971768--15973043 Score: 1565
Period size: 698 Copynumber: 1.8 Consensus size: 698
15971758 GCCATTCTGC
* * * *
15971768 CTCTCCGGCAGGCTGAGCGCACGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT
1 CTCTCCGGCAGACTGAGCGCACGAACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATT
* * * ** ** *
15971833 TCATGTCTAAGCTCCAGCCGAACAGAAGGTTGTGGCAACGGGACCGGTAGCACGTAGAGGGGGAC
66 CCATGTCGAAGCCCCAGCCGAACAGAAGGTTGTGGCAACGGGACCGACAGCACACAAAGGGGGAC
* * * * * * * *
15971898 CGGGCCGATCCTCGGCTTGCACATTATGACTCTCCAGCCGGCTCAGCGCCCAAACTCTCGTTTCG
131 CCGACCAATCCCCGACTTGCACATTATGACTCTCCAGCCAGCTCAGCGCCCAAACGCTCATTTCG
* * * *
15971963 TGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGAGTTGCGGC
196 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCAAAGATAGGACCGGACCGAGAGTTACGAC
* * * *
15972028 AGCAAGATCGATAGTACGTAGGGGGAACCGGACCGGTCCCCGACTTGCTCATTCTGCCTCTCCAG
261 AGCAAGATCGACAGCACGTAGGGGGAACCGGACCGATCCCCGACTTGCTCATTCTACCTCTCCAG
** * *
15972093 CTGGCTGAGCGCCAGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
326 CCAGCTGAGCGCCAGCACGCTCGTTTCATGAGTTAGCTTAGGCATACAGAGTTCATTCCATGTCT
* * *
15972158 AAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAACAGGACCAG
391 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAACAGGACCAG
* * * * * * *
15972223 CAGTAGGATAGGCATCACGTAGGGGGGGACCGGACCGATCCCTGGTTTACGCATTCTGCCTTTCC
456 CAGCAGGATAGACAGCACGTAGAGGGGGACCGGACCGATCCCTAGTTTACGCATTCTACCTCTCC
* * * *** *
15972288 GGTCGGCTTAGCGCTTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGT
521 AGTCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGT
15972353 CTAAGCATACGGAGTTCATTCCTAGTGTAAGATCAAACTAGACCGAGGGTTACGGCACTAGGATC
586 CTAAGCATACGGAGTTCATTCCTAGTGTAAGATCAAACTAGACCGAGGGTTACGGCACTAGGATC
15972418 GGTAGCACGTAGGGGGACCGGGCTGTCCCCAGCTTACGGATTCTACCT
651 GGTAGCACGTAGGGGGACCGGGCTGTCCCCAGCTTACGGATTCTACCT
* *
15972466 CTCTCCGGCCGACTGAGCGC-CAGAACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCAT
1 CTCTCCGGCAGACTGAGCGCAC-GAACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCAT
* * * * * * *
15972530 TCCATGTCGAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGATCGACAGCACACAAATGGGGA
65 TCCATGTCGAAGCCCCAGCCGAACAGAAGGTTGTGGCAACGGGACCGACAGCACACAAAGGGGGA
** * *** * * **
15972595 CCCGACCAATCCCCGACTTGCTTATTATGCCTCTTTGGCTAGCTCAGTGCCCGTACGCTCATTTC
130 CCCGACCAATCCCCGACTTGCACATTATGACTCTCCAGCCAGCTCAGCGCCCAAACGCTCATTTC
* * * * * *
15972660 GTGGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCAAAGATCGGATCGGACTGTGGGTTACG
195 GTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCAAAGATAGGACCGGACCGAGAGTTACG
* * * * * *
15972724 ATAGCAGGATGGACAGCACGTAAGGGGGGACTGGGCCGATCCCCGACTTG-TGCATTCTACCTCT
259 ACAGCAAGATCGACAGCACGT-AGGGGGAACCGGACCGATCCCCGACTTGCT-CATTCTACCTCT
* * *
15972788 CC-GACCAGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATACAGAGTTCATTCCA
322 CCAG-CCAGCTGAGCGCCAGCACGCTCGTTTCATGAGTTAGCTTAGGCATACAGAGTTCATTCCA
* * * **
15972852 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA-CTGGACCGAGGGTTGCGGTAGTAG
386 TGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATC-AGACCGAGGGTTGCGGCAACAG
* * * * **
15972916 GAGCAGCAGCAGGATCGACAGCACGTA-AGGGGGACCGGGCTGATCCCTAGTTTGTGCATTCTAC
450 GACCAGCAGCAGGATAGACAGCACGTAGAGGGGGACCGGACCGATCCCTAGTTTACGCATTCTAC
* * * **
15972980 CTCTCCAGTCGACTGAGCGCCCATACGCTTGTTTCGTGGGTTGGTTTAGGCATACAGAGTTCAT
515 CTCTCCAGTCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
15973044 TCCTTGTTTA
Statistics
Matches: 473, Mismatches: 99, Indels: 12
0.81 0.17 0.02
Matches are distributed among these distances:
697 2 0.00
698 305 0.64
699 166 0.35
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (698 bp):
CTCTCCGGCAGACTGAGCGCACGAACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATT
CCATGTCGAAGCCCCAGCCGAACAGAAGGTTGTGGCAACGGGACCGACAGCACACAAAGGGGGAC
CCGACCAATCCCCGACTTGCACATTATGACTCTCCAGCCAGCTCAGCGCCCAAACGCTCATTTCG
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCAAAGATAGGACCGGACCGAGAGTTACGAC
AGCAAGATCGACAGCACGTAGGGGGAACCGGACCGATCCCCGACTTGCTCATTCTACCTCTCCAG
CCAGCTGAGCGCCAGCACGCTCGTTTCATGAGTTAGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAACAGGACCAG
CAGCAGGATAGACAGCACGTAGAGGGGGACCGGACCGATCCCTAGTTTACGCATTCTACCTCTCC
AGTCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGT
CTAAGCATACGGAGTTCATTCCTAGTGTAAGATCAAACTAGACCGAGGGTTACGGCACTAGGATC
GGTAGCACGTAGGGGGACCGGGCTGTCCCCAGCTTACGGATTCTACCT
Found at i:15973249 original size:26 final size:26
Alignment explanation
Indices: 15973213--15973265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15973203 GTTGACTTAG
* *
15973213 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
15973239 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15973265 G
1 G
15973266 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15973716 original size:26 final size:26
Alignment explanation
Indices: 15973680--15973732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15973670 GTTGGCTTAG
15973680 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
15973706 GCATCCAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15973732 G
1 G
15973733 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15976051 original size:160 final size:159
Alignment explanation
Indices: 15975661--15976224 Score: 388
Period size: 160 Copynumber: 3.5 Consensus size: 159
15975651 CCTGACCTAT
* ** * *
15975661 GCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAAGC-C-CGTTTCGTGGGTTGGCTTAGGCATA
1 GCATTATGCCTCTCCGATCGGCTCAGCACCCG-AA-CACTTGTTTCGTGGGTTGGCTTAGGCATA
* * * * * * * * *
15975724 GGGAGTTGATTCCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGCAGCGGGACCGACAGCAC
64 -CGAGTTCATTCCATGTCTAAGCACCAGATCGAACAGAAGGTTGCGGCAGCAGGACCGACAGCAC
* * *
15975788 GCA-AGGGGGA-CCGGACCGATCCCC-AGCTT-A
128 GTAGAGGGGGATCAGG-CTGATCCCCGA-CTTGA
* * ** ** ** * *
15975818 CGCATTCTACCTCTCC-AGTCAACTGGGTGCCC--ACATGCTCGTTTCGTGTGTTGGCTTAGGCA
1 -GCATTATGCCTCTCCGA-TCGGCTCAGCACCCGAACA--CTTGTTTCGTGGGTTGGCTTAGGCA
* * * * * *
15975880 TACGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGACAGATGGTTGTGGTAGCAGGACCG-CAAG
62 TAC-GAGTTCATTCCATGTCTAAGCACCAGATCGAACAGAAGGTTGCGGCAGCAGGACCGAC-AG
* *
15975943 CGA-GTAGAGGGGGATCGGGGTCGATCCCCGACTTGA
125 C-ACGTAGAGGGGGATCAGGCT-GATCCCCGACTTGA
* *
15975979 GCATTATGCCTCTCC-AGTCGGCTCAGCACCCGAACGC-TGATTTCGTGGGTTGACTTAGGCATA
1 GCATTATGCCTCTCCGA-TCGGCTCAGCACCCGAACACTTG-TTTCGTGGGTTGGCTTAGGCATA
* * * * *
15976042 CGTAGTTCATTCCCA-GTGTAAG-ATCAGATCGAACTGAAGGTTGCGGCAGTAGGATCGACAGCA
64 CG-AGTTCATT-CCATGTCTAAGCACCAGATCGAACAGAAGGTTGCGGCAGCAGGACCGACAGCA
* * *
15976105 CGTAGGGGGGGATCAGGCTGGTCCCCGACTTGT
127 CGTAGAGGGGGATCAGGCTGATCCCCGACTTGA
* * * *
15976138 GCATTTTGCCTTTCCGATCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGGCTTAGGCATACA
1 GCATTATGCCTCTCCGATCGGCTCAGCACCCGAACACTTGTTTCGTGGGTTGGCTTAGGCATAC-
* *
15976203 GGGTTCATTCCATATCTAAGCA
65 GAGTTCATTCCATGTCTAAGCA
15976225 TACGGAGTTC
Statistics
Matches: 320, Mismatches: 60, Indels: 50
0.74 0.14 0.12
Matches are distributed among these distances:
154 1 0.00
155 1 0.00
157 2 0.01
158 100 0.31
159 91 0.28
160 117 0.37
161 6 0.02
162 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATTATGCCTCTCCGATCGGCTCAGCACCCGAACACTTGTTTCGTGGGTTGGCTTAGGCATACG
AGTTCATTCCATGTCTAAGCACCAGATCGAACAGAAGGTTGCGGCAGCAGGACCGACAGCACGTA
GAGGGGGATCAGGCTGATCCCCGACTTGA
Found at i:15977453 original size:26 final size:26
Alignment explanation
Indices: 15977424--15977483 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
15977414 GTTGACTTAG
15977424 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
**
15977450 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15977476 G-AT-CGGAG
1 GCATACGGAG
15977484 CAGACCGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 20 0.69
27 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15977961 original size:26 final size:26
Alignment explanation
Indices: 15977924--15977976 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15977914 GTTGGCTTAG
15977924 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
15977950 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15977976 G
1 G
15977977 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15978358 original size:158 final size:154
Alignment explanation
Indices: 15978093--15978603 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 154
15978083 CATGTCGTGT
* * *
15978093 GTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAG
1 GTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
* *
15978157 CAGGATCGA-CAGCATGCAGGGGGGACCGAGTTCGTCCCTGGCTTGCGTATTATGCCTCTTTGGC
65 CAGGATCGAGCA-CA--CAGGGGGGACCGGGTT-GTCCC-GGCTTGCGCATTATGCCTCTTTGGC
* *
15978221 TGGCTGAGCACTCGTACGCTCATTTCATGG
125 TGGCTGAGCGCCCGTACGCTCATTTCATGG
* * *
15978251 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAAC
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGC
* * * * * * *
15978316 AAGATCAGTAGCACACAGGGGGGACTGGGTTGATCCTCGGCTTGCGCATTCTACCTGTTCGACCT
66 AGGATC-G-AGCACACAGGGGGGACCGGGTTG-TCC-CGGCTTGCGCATTATGCCTCTTTG-GCT
* *
15978381 -ACTGAGCGCCCGCACGGC-CATTTCATGG
126 GGCTGAGCGCCCGTAC-GCTCATTTCATGG
* * *
15978409 GTTCG-CTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGCCAG
1 GTT-GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
* ** * *
15978473 CAGGATTGA-CAACATGCAGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTATGCCTCTCTGG-
65 CAGGATCGAGC-ACA--CAGGGGGGACCGGG-TTGT-CCCGGCTTGCGCATTATGCCTCTTTGGC
* *
15978536 TCGGCTGAGTGCCCGTACGGTCATTTCATGG
125 T-GGCTGAGCGCCCGTACGCTCATTTCATGG
* * *
15978567 ATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
15978604 CATATGGAGT
Statistics
Matches: 290, Mismatches: 45, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
155 1 0.00
156 5 0.02
157 4 0.01
158 264 0.91
159 11 0.04
160 3 0.01
161 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (154 bp):
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGC
AGGATCGAGCACACAGGGGGGACCGGGTTGTCCCGGCTTGCGCATTATGCCTCTTTGGCTGGCTG
AGCGCCCGTACGCTCATTTCATGG
Found at i:15979263 original size:26 final size:26
Alignment explanation
Indices: 15979227--15979279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15979217 GTTGACTTAG
15979227 GCATATGGAGTTCATCCCCAGTATAA
1 GCATATGGAGTTCATCCCCAGTATAA
* *
15979253 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTATAA
15979279 G
1 G
15979280 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTATAA
Found at i:15979726 original size:158 final size:156
Alignment explanation
Indices: 15979260--15979754 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 156
15979250 TAAGCATATG
* * * **
15979260 GAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAGGATCGGTAGCACGT
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCG-CAGTAGGATCGACAGCACGT
* * * * ** * *
15979324 AGGGGGGATCGGGTCGATCCTCGGCTTATGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACG
64 AGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACG
* * * *
15979389 CCCGTTTCATGGGTTGGCTTGGGCATAGG
129 CTCATTTCATGGGTTGGCTTAGGCATA-C
** * ** *
15979418 GAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGATCGACAGCACGC
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTG-CGCAGTAGGATCGACAGCACGT
* * * * *
15979482 GGAGGGGGACCGGGCCGATCCCC-AGCTTGCGCATTGTGCCTCTCCGATCGGCTCAACGCCCGTA
64 AG-GGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTA
* *
15979546 GGCTCATTTCATGGATTGGCTTAGGCATAC
127 CGCTCATTTCATGGGTTGGCTTAGGCATAC
* *
15979576 GATGTTCATTCC-TAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGATCTACAGCAAG
1 GA-GTTCATTCCAT-GTCTAAGATCAGACCGGACTGAGGGTTGC-GCAGTAGGATCGACAGCACG
* * * * *
15979640 TAGGGGGGACCGGACCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCAGCTGAGCACCCGTAC
63 TAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTAC
* ** *
15979705 GTTCATTTTGTGGGTTGGCTTAGACATAC
128 GCTCATTTCATGGGTTGGCTTAGGCATAC
15979734 GGAGTTCATTCCATGTCTAAG
1 -GAGTTCATTCCATGTCTAAG
15979755 CATACAGAGT
Statistics
Matches: 271, Mismatches: 54, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 141 0.52
159 127 0.47
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGCAGTAGGATCGACAGCACGTAG
GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCT
CATTTCATGGGTTGGCTTAGGCATAC
Found at i:15979758 original size:26 final size:26
Alignment explanation
Indices: 15979729--15979780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15979719 TTGGCTTAGA
*
15979729 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
15979755 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
15979781 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:15979905 original size:184 final size:184
Alignment explanation
Indices: 15979570--15979936 Score: 454
Period size: 184 Copynumber: 2.0 Consensus size: 184
15979560 ATTGGCTTAG
* * * *
15979570 GCATACGATGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGATCTACA
1 GCATACGATGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGATTGCAGCAGTAGGATCGACA
* ** *
15979635 GCAAGTAGGGGGGACCGGACCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCAGCTGAGCACC
66 GCAAGCAGAAGGGACCGGACCGATCCCCGACTTACGTATTCTGCCTCTCCGGCCAGCTGAGCACC
* * **
15979700 CGTACGTTCATTTTGTGGGTTGGCTTAGACATACGG-AGTTCATTCCATGTCTAA
131 CGCACGTCCATTTCATGGGTTGGCTTAGACATA-GGTAGTTCATTCCATGTCTAA
* * *
15979754 GCATACAGA-GTTCATTCCCAGTCTAAGATCAAACTGGA-TGGAGGATTGCGGTAGTAGGATCGA
1 GCATAC-GATGTTCATTCCCAGTCTAAGATCAAACCGGACT-GAGGATTGCAGCAGTAGGATCGA
* * * *
15979817 CAGCACA-CAGAAGGGACCGGGCCGATCCCCGACTTACGTATTCTGCCTCTTCGGTCGGCTGAGC
64 CAGCA-AGCAGAAGGGACCGGACCGATCCCCGACTTACGTATTCTGCCTCTCCGGCCAGCTGAGC
* * * * *
15979881 GCCTGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGTTGTTCATTCCATGTCTA
128 ACCCGCACGTCCATTTCATGGGTTGGCTTAGACATAGGTAGTTCATTCCATGTCTA
15979937 TGCCCCAACC
Statistics
Matches: 155, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
183 3 0.02
184 149 0.96
185 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (184 bp):
GCATACGATGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGATTGCAGCAGTAGGATCGACA
GCAAGCAGAAGGGACCGGACCGATCCCCGACTTACGTATTCTGCCTCTCCGGCCAGCTGAGCACC
CGCACGTCCATTTCATGGGTTGGCTTAGACATAGGTAGTTCATTCCATGTCTAA
Found at i:15980097 original size:501 final size:500
Alignment explanation
Indices: 15979155--15980256 Score: 1289
Period size: 501 Copynumber: 2.2 Consensus size: 500
15979145 CTACCCATTT
* * *
15979155 GATCCCC-AGCTTGCGCATCCTGCCTCTCTGGTAGGCTGAGCACCCGCACGCTT-GTTTCGTGGG
1 GATCCCCGA-CTTGCGCATTCTGCCTCTCCGGCA-GCTGAGCACCCGCACG-TTCGTTTCGTGGG
* * * * **
15979218 TTGACTTAGGCATATGGAGTTCATCCCCA-GTATAAGCATATGGAGTTCATTCCCAGTCTAAGAT
63 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
** * ** ** ** * * *
15979282 CGGACCGGACCGAGGGTTACGACAGTAGGATCGGTAGCACGTAGGGGGGATCGGGTCGATCCTCG
127 CAAACCGGACCGAGGATTACGACAGTAGGATCGACAGCACACAGAAGGGACCGGGCCGATCCCCG
* * *
15979347 GCTTATGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTGGG
192 ACTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
* * **
15979412 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGATCGACAG
257 CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGCAAGATCGACAG
* * * *
15979477 CACGCGGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTGTGCCTCTCCGATCGGCTCAACGCC
322 CACGCAGACGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCC
* * * *
15979542 CGTAGGCTCATTTCATGGATTGGCTTAGGCATACGATGTTCATTCCTAGTCTAAGATCAGACCGG
387 CGCAGGCTCATTTCATGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGG
** *
15979607 ACTGAGGGTTGCAG-CAGTAGGATCTACAGCAAGTAGGGGGGACCGGACC
452 ACCAAGGGTTG-AGACAGTAGGATCGACAGCAAGTAGGGGGGACCGGACC
* * * *
15979656 GATCCCCGACTTGCGTATTCTGCCTCTCCGGCCAGCTGAGCACCCGTACGTTCATTTTGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCACCCGCACGTTCGTTTCGTGGGTT
*
15979721 GGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAA
* ** * **
15979786 ACTGGATGGAGGATTGCGGTAGTAGGATCGACAGCACACAGAAGGGACCGGGCCGATCCCCGACT
130 ACCGGACCGAGGATTACGACAGTAGGATCGACAGCACACAGAAGGGACCGGGCCGATCCCCGACT
* * * ** * *
15979851 TACGTATTCTGCCTCTTCGGTCGGCTGAGCGCCTGCACGTCCGTTTCATGGGTTGGCTTAGGCAT
195 TACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
** *
15979916 AGGTTGTTCATTCCATGTCTATGCCCCAACCAGAAC-GAGGGTTGTGGCAGCAAGA-CTGACAGC
260 AGGGAGTTCATTCCATGTCTAAGCCCCAACC-GAACTGAGGGTTGTGGCAGCAAGATC-GACAGC
* * * * * * * * **
15979979 AGGCAGACGGGGATCAGGCTGATCCCCGGCTTGCGTATTATGCCTCTCTGGTCGGCTTAGTGCCC
323 ACGCAGACGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCC
* * * ** *
15980044 GCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGTTTGGATCGGA
388 GCAGGCTCATTTCATGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * *
15980109 CCAAGGGTTGTGACAGTAGGATCGACAGCACGTAGGGGGGACCGGGCC
453 CCAAGGGTTGAGACAGTAGGATCGACAGCAAGTAGGGGGGACCGGACC
* * * * * ** *
15980157 GATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCG-GCAGCTGAGCACCCGCACGTTCGTTTCGTGGGTT
*
15980222 GGCTAAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15980257 CCCAGCCGAA
Statistics
Matches: 500, Mismatches: 93, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
500 7 0.01
501 488 0.98
502 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (500 bp):
GATCCCCGACTTGCGCATTCTGCCTCTCCGGCAGCTGAGCACCCGCACGTTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAA
CCGGACCGAGGATTACGACAGTAGGATCGACAGCACACAGAAGGGACCGGGCCGATCCCCGACTT
ACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGCAAGATCGACAGCACG
CAGACGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCGCA
GGCTCATTTCATGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
AGGGTTGAGACAGTAGGATCGACAGCAAGTAGGGGGGACCGGACC
Found at i:15980231 original size:158 final size:157
Alignment explanation
Indices: 15979806--15980287 Score: 484
Period size: 158 Copynumber: 3.0 Consensus size: 157
15979796 GGATTGCGGT
* * * *
15979806 AGTAGGATCGACAGCACACAGAAGGGACCGGGCCGATCCCCGACTTACGTATTCTGCCTCTTCGG
1 AGTAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGG
* * * **
15979871 TCGGCTGAGCGCCTGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGTTGTTCATTCCATGTCT
66 TCGGCTGAGCGCCCGCACCT-CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
* * *
15979936 ATGCCCCAACCAGAACGAGGGTTGTGGC
130 AAGCCCCAACCAGAACAAGGGTTGTGAC
* * * * * * * * *
15979964 AGCAAGA-CTGACAGCAGGCAGACGGGGATCAGGCTGATCCCCGGCTTGCGTATTATGCCTCTCT
1 AGTAGGATC-GACAGCACGCAGA-GGGGACCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTCC
* * * * *
15980028 GGTCGGCTTAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-G
64 GGTCGGCTGAGCGCCCGCA-CCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATG
***** * * *
15980092 TCTAAGTTTGGATCGGACCAAGGGTTGTGAC
127 TCTAAGCCCCAACCAGAACAAGGGTTGTGAC
* * * *
15980123 AGTAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
1 AGTAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGG
* *
15980188 TCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCATGTCT
66 TCGGCTGAGCGCCCGCAC-CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
* * **
15980253 AAGCCCCAGCC-GAACCGAGGGTTGTGGT
130 AAGCCCCAACCAGAA-CAAGGGTTGTGAC
15980281 AGTAGGA
1 AGTAGGA
15980288 CTGGCAGAGG
Statistics
Matches: 251, Mismatches: 65, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 6 0.02
158 125 0.50
159 115 0.46
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGG
TCGGCTGAGCGCCCGCACCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
AGCCCCAACCAGAACAAGGGTTGTGAC
Found at i:15982085 original size:159 final size:159
Alignment explanation
Indices: 15981707--15982097 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 159
15981697 TAAGCATATA
* * ** * * *
15981707 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGTAGGATTGGTAGCATGCA
1 GAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATAGGTAGCACGCA
* * *
15981772 G-GGGGGA-CCAAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCAC
65 GAGGGGGACCCAAGCTGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGCTAAGCGCCCGCAC
* * * *
15981835 GCCCATTTTATGGGTTGGCTTAGGCATAGG
130 ACCCATTTCATGGGTTGGCTTACGCATACG
** * ** *
15981865 GAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTTGTAGC-GAGACCGGCAGCACG
1 GAGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGTAGCAG-GATAGGTAGCACG
* * * * * * *
15981928 CAGAGAGGGACCCGATC-GATCCCTGGCTTGCGCATTATGCCTCTACGACTGGTTCAGCGCCCGC
63 CAGAGGGGGACCCAAGCTGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGCTAAGCGCCCGC
* *
15981992 ACACCCGTTTCGTGGGTTGAG-TTACGCATACG
128 ACACCCATTTCATGGGTTG-GCTTACGCATACG
* *
15982024 GAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATAGATAGCACGCA
1 GAGTTCATTCC-AGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATAGGTAGCACGCA
15982089 -AGGGGGACC
65 GAGGGGGACC
15982098 GGCCCAGTCC
Statistics
Matches: 187, Mismatches: 37, Indels: 18
0.77 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 56 0.30
159 120 0.64
160 7 0.04
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (159 bp):
GAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATAGGTAGCACGCAG
AGGGGGACCCAAGCTGATCCCCGGCTTGCGCATTATGCCTCTACGACCGGCTAAGCGCCCGCACA
CCCATTTCATGGGTTGGCTTACGCATACG
Found at i:15982204 original size:26 final size:26
Alignment explanation
Indices: 15982175--15982227 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15982165 GTTGGCTTAG
15982175 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
15982201 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15982227 G
1 G
15982228 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15982933 original size:159 final size:158
Alignment explanation
Indices: 15982570--15982966 Score: 406
Period size: 159 Copynumber: 2.5 Consensus size: 158
15982560 CCAGTCTAAC
** * *
15982570 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCCGTAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCCGCAG
* * *
15982635 CACGCAGGAGGGACCGAGCCAATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
66 CACGCAGGAGGGACCGAGCCAATCCTCGGCTTGTGCATTATGCCTCTCAGATCGGCTCAGCGCCC
**
15982700 GCACACCCGTTTCATGGGTTGGCTTAGG
131 GCACACCCGTTTCATGGGTTCACTTAGG
* ** * * *
15982728 CATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATTGGACCAAGGGTTGTGGCAGCGGGA-CCGA
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCCG-
* * ** * *
15982790 CAGCACGCAGAGGGGGACCGGGCTGATCCTCGGTTTTTGCATTATGCCTCTTCAG-TCGGCTCAG
63 CAGCACGCAG-GAGGGACCGAGCCAATCCTCGGCTTGTGCATTATGCCTC-TCAGATCGGCTCAG
* * * * *
15982854 TGCCCGCACGCTCGTTTCGTGGGTTCACTTATG
126 CGCCCGCACACCCGTTTCATGGGTTCACTTAGG
* * ** * **
15982887 CATACGGAGTTCCTTCCCAGCCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCAGGATCAACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCCGCAG
* *
15982952 CACGTAGGGGGGACC
66 CACGCAGGAGGGACC
15982967 CGGCCGATCC
Statistics
Matches: 191, Mismatches: 40, Indels: 16
0.77 0.16 0.06
Matches are distributed among these distances:
157 6 0.03
158 63 0.33
159 115 0.60
160 7 0.04
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCCGCAG
CACGCAGGAGGGACCGAGCCAATCCTCGGCTTGTGCATTATGCCTCTCAGATCGGCTCAGCGCCC
GCACACCCGTTTCATGGGTTCACTTAGG
Found at i:15983081 original size:26 final size:26
Alignment explanation
Indices: 15983045--15983095 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15983035 TTGGCTTAGG
15983045 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
*
15983071 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15983096 GGATTTTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:15984100 original size:159 final size:158
Alignment explanation
Indices: 15983798--15984300 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 158
15983788 CCCAATCTAA
* * * * * * * * ***
15983798 GCATGCGGAGTTCATTCCCA-GTCTAAGATCGGACCAGATCGAGGGTTGCGGCAACAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGCTCAGACCGGACCGAGGGTTACGGCAGCAGGACCAAC
* * * * * * * * **
15983862 AGCATGCAGGGGGGATCGAACCGATCCTCGGCTTACGTATTTTGCCTCTCCAGTCGGCTGAGTGC
65 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAGCTAAGCAC
*
15983927 CTGCACGCCCGTTTTGTGGGTTGGCTTAG
130 CTGCACGCTCGTTTTGTGGGTTGGCTTAG
* * ** * *
15983956 TCATAGGGAGTTCATTCCATGTCTAAGCTCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCT-CAGACCGGACCGAGGGTTACGGCAGCAGGACCAAC
* *
15984020 AGCACGTAGAGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAGCTCAGCA
65 AGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAGCTAAGCA
* * *
15984085 CCTGTACGCTCGTTTTGTTGGTTGACTTAG
129 CCTGCACGCTCGTTTTGTGGGTTGGCTTAG
* ** * * *
15984115 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGACGGGACCGAGGGTTACGGTAGCAGGATCAAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCTCAGACCGGACCGAGGGTTACGGCAGCAGGACCAAC
* * * ** * * * *
15984179 AGGACGCAGGGGGGATCGAGACGGTCCCCAACTTGCGCATTCTGCCTCTCTGG-CTGACTAAGCA
65 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAG-CTAAGCA
* *
15984243 CATGCACGCTCATTTTGTGGGTTGGCTTAG
129 CCTGCACGCTCGTTTTGTGGGTTGGCTTAG
15984273 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15984301 ATACGGAGTT
Statistics
Matches: 281, Mismatches: 57, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 5 0.02
158 146 0.52
159 130 0.46
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCTCAGACCGGACCGAGGGTTACGGCAGCAGGACCAACA
GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAGCTAAGCACC
TGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:15984266 original size:158 final size:159
Alignment explanation
Indices: 15983862--15984300 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 159
15983852 CAGGATCGGT
* * ** * * * * * *
15983862 AGCATGCAG-GGGGGATCGA-ACCGATCCTCGGCTTACGTATTTTGCCTCTCCAGTCGGCTGAGT
1 AGCACGCAGAGGGGGATCGAGA-CGATCCCCAACTTACGCATTATGCCTCTCCGGTCAGCTAAGC
* * * * *
15983925 GCCTGCACGCCCGTTTTGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCTCCAGC
65 ACATGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGC
** * *
15983990 CGGACCGAGGGTTGTGGCAGCGGGACCGAC
130 CGGACCGAGGGTTACGGCAGCAGGACCAAC
* * ** *
15984020 AGCACGTAGAGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAGCTCAGCA
1 AGCACGCAGAGGGGGATCGAGACGATCCCCAACTTACGCATTATGCCTCTCCGGTCAGCTAAGCA
* * * * * **
15984085 CCTGTACGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGAT-TGGA
66 CATGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCTCCAG-
* * *
15984148 CGGGACCGAGGGTTACGGTAGCAGGATCAAC
129 CCGGACCGAGGGTTACGGCAGCAGGACCAAC
* * * * * *
15984179 AGGACGCAG-GGGGGATCGAGACGGTCCCCAACTTGCGCATTCTGCCTCTCTGG-CTGACTAAGC
1 AGCACGCAGAGGGGGATCGAGACGATCCCCAACTTACGCATTATGCCTCTCCGGTCAG-CTAAGC
*
15984242 ACATGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 ACATGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15984301 ATACGGAGTT
Statistics
Matches: 231, Mismatches: 44, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 102 0.44
159 127 0.55
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGAGACGATCCCCAACTTACGCATTATGCCTCTCCGGTCAGCTAAGCA
CATGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGCC
GGACCGAGGGTTACGGCAGCAGGACCAAC
Found at i:15984309 original size:26 final size:26
Alignment explanation
Indices: 15984273--15984325 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15984263 GTTGGCTTAG
15984273 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15984299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15984325 G
1 G
15984326 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15984454 original size:184 final size:184
Alignment explanation
Indices: 15984115--15984484 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
15984105 GTTGACTTAG
* * * * *
15984115 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACGGGACCGAGGGTTACGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCAGGATCAACA
* ** *
15984180 GGACGCAGGGGGGATCGAGACGGTCCCCAACTTGCGCATTCTGCCTCTCTGGCTGACTAAGCACA
66 GCACGCAGGGGGGATCGAGACAATCCCCAACTTGCGCATTCTGCCTCTCTGGCCGACTAAGCACA
* * *
15984245 TGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
15984299 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGTAGGATCAACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCAGGATCAACA
* *** * * **
15984364 GCACGCAGGGGGGATCGAGCCAATCCCTGGCTTGCGCATTTTGCCTCT-TCGGCCGACTGAGTGC
66 GCACGCAGGGGGGATCGAGACAATCCCCAACTTGCGCATTCTGCCTCTCT-GGCCGACTAAGCAC
* * *
15984428 CCGCACGGC-CGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 ACGCAC-GCTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15984483 GC
1 GC
15984485 CCCAGTCAAA
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 1 0.01
184 154 0.98
185 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGCAGCAGGATCAACA
GCACGCAGGGGGGATCGAGACAATCCCCAACTTGCGCATTCTGCCTCTCTGGCCGACTAAGCACA
CGCACGCTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15984662 original size:501 final size:501
Alignment explanation
Indices: 15983744--15984827 Score: 1280
Period size: 501 Copynumber: 2.2 Consensus size: 501
15983734 GCCGAGCGAC
* * * * * * * *
15983744 CGCACGTTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCA-ATCTAAGCATGCGGAG
1 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAG
* *** *
15983808 TTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAACAGGATCGGTAGCATGCAGGG
65 TTCATTCCCAGTCTAAGATCGGACCAGAACGAGGGTTGCGGCAACAGGATCAACAGCACGCAGGG
* * * * *
15983873 GGGATCGAACCGATCCTCGGCTTACGTATTTTGCCTCTCCAGTCGGCTGAGTGCCTGCACGCCCG
130 GGGATCGAACCAATCCTCGGCTTACGCATTTTGCCTCTCCAGCCGACTGAGTGCCCGCACGCCCG
* * * * **
15983938 TTTTGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTT
195 TTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTT
* **
15984003 GTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCT
260 GTGGCAGCGGGACAGACAGCACACAGAGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCT
** * * * *
15984068 CTCCGGTCAGCTCAGCACCTGTACGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCC
325 CTCCGACCAGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * ** * **
15984133 TAGTCTAAGATTGGACGGGACCGAGGGTTACGGTAGCAGGATCAACAGGACGCAGGGGGGA-TCG
390 CAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCAACACCACGCAGGGGGGACT-G
** * *
15984197 AGACGGTCCCCAACTTGCGCATTCTGCCTCTCTGGCTGACTAAGCACA
454 AGACAATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGACTAAGCACA
* *
15984245 TGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
1 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
** *
15984310 TCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGCGGCAGTAGGATCAACCGCACGCAGGG
66 TCATTCCCAGTCTAAGATCGGACCAGAAC-GAGGGTTGCGGCAACAGGATCAACAGCACGCAGGG
* * * * *
15984374 GGGATCGAGCCAATCC-CTGGCTTGCGCATTTTGCCTCTTCGGCCGACTGAGTGCCCGCACGGCC
130 GGGATCGAACCAATCCTC-GGCTTACGCATTTTGCCTCTCCAGCCGACTGAGTGCCCGCACGCCC
*
15984438 GTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCGAGGGT
194 GTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGT
* * * * * * * * *
15984503 TGTGGCAGTGGGATAGGCAGCACACAGAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTATGCG
259 TGTGGCAGCGGGACAGACAGCACACAGAGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCC
* * ** * * * *
15984568 TCTTCGACCGGCTTTGCGCCCGCACGTTCATTTCT-TGGGTTGACTTATGCATATGGAGTTCATT
324 TCTCCGACCAGCTCAGCACCCGCACGCTCATTT-TGTGGGTTGACTTAGGCATACGGAGTTCATT
** * * *
15984632 CCCAATCTAAGATCGGACCAGATTGAGGGTTACGGCAGCATGATCGATACCACGCAGGGGGGACT
388 CCCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCAACACCACGCAGGGGGGACT
* * ** * * * *
15984697 GGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGACTGAGCGCC
453 GAGACAATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGACTAAGCACA
* * *
15984746 CGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGT
1 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
15984811 TCATT-CCAGTCTAAGAT
66 TCATTCCCAGTCTAAGAT
15984828 TTTGAGCCAC
Statistics
Matches: 487, Mismatches: 91, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
500 19 0.04
501 466 0.96
502 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (501 bp):
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCAGAACGAGGGTTGCGGCAACAGGATCAACAGCACGCAGGGG
GGATCGAACCAATCCTCGGCTTACGCATTTTGCCTCTCCAGCCGACTGAGTGCCCGCACGCCCGT
TTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTG
TGGCAGCGGGACAGACAGCACACAGAGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTC
TCCGACCAGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCAACACCACGCAGGGGGGACTGAG
ACAATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGACTAAGCACA
Found at i:15984778 original size:158 final size:156
Alignment explanation
Indices: 15984299--15984800 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 156
15984289 CCATGTCTAA
15984299 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGCGGCAGTAGGATC-AA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGCGGCAGTAGGATCGAA
* * *
15984362 CCGCACGCAGGGGGGATCGAGCCAATCCCTGGCTTGCGCATTTTGCCTCTTCGGCCGACTGAGTG
65 -C-CACGCAGGGGGGAT-GGGCCAATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGACTGAGCG
15984427 CCCGCACGGC-CGTTTCGTGGATTGGCTTAG
127 CCCGCAC-GCTCGTTTCGTGGATTGGCTTAG
* * ** * * * * * *
15984457 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAAACCGAGGGTTGTGGCAGTGGGATAGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACTGAGGGTTGCGGCAGTAGGAT-CG
* * * * * * * * * * **
15984520 CAGCACACAGAGGGGGATTGGGTCGATCCTCGGCTTGCGCATTATGCGTCTTCGACCGGCTTTGC
63 AACCACGCAG-GGGGGA-TGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGACTGAGC
* * * * * *
15984585 GCCCGCACGTTCATTTCTTGGGTTGACTTAT
126 GCCCGCACGCTCGTTTCGTGGATTGGCTTAG
* * * * * *
15984616 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGATTGAGGGTTACGGCAGCATGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTAGGATCGA-A
*
15984681 CCACGCAGGGGGGACTGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGACTGAGCGCC
65 CCACGCAGGGGGGA-TGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGACTGAGCGCC
*
15984746 CGCACGCTCGTTTCGTGGTTTGGCTTAG
129 CGCACGCTCGTTTCGTGGATTGGCTTAG
*
15984774 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15984801 CATACGGAGT
Statistics
Matches: 263, Mismatches: 69, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 8 0.03
158 139 0.53
159 109 0.41
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTAGGATCGAAC
CACGCAGGGGGGATGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGACTGAGCGCCCG
CACGCTCGTTTCGTGGATTGGCTTAG
Found at i:15984811 original size:26 final size:25
Alignment explanation
Indices: 15984774--15984825 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15984764 TTTGGCTTAG
15984774 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
*
15984800 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
15984825 G
1 G
15984826 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:15985974 original size:171 final size:171
Alignment explanation
Indices: 15985572--15986034 Score: 395
Period size: 171 Copynumber: 2.7 Consensus size: 171
15985562 GGGTTGTGAT
* * * * * * * * *
15985572 AGCAGGATCGACAGCACG--TAGGAAGGATCGAGTCGATCCCCGGCTTGCGCATTTTGCCTCTTC
1 AGCAGGATCGACAGCACGCAAAGG-GGGACCGGGTCGATCTCCGACTTACGCATTATGCCTCTCC
* * * * * * * * * *
15985635 GG-TCGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGTCTTAGGCATAGGGAGGTCATTTCCA-
65 GGCT-GGGTGAGCGCCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCA-TTCCAT
* ** *
15985698 GTCCAAG-ATCGGACCAGACCGAGGGTTGTGGCAGCAGGACCAGC
128 GTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGACCAGC
* * * ** *
15985742 AGCAGGATCGACAGCACGCAGAGGGTGATCGGGTCGATCTCCGACTTGTGCATTCTGCCTCTCC-
1 AGCAGGATCGACAGCACGCAAAGGGGGACCGGGTCGATCTCCGACTTACGCATTATGCCTCTCCG
* * * * * *
15985806 GATCGGTTGAGTGCCCGCATGCTCATTTTATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GCT-GGGTGAGCGCCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCATGT
* *
15985871 CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTATGACCAGC
130 CTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGC
* * * * *
15985913 AGCGGGATCGGCTA-CATGCAAAGGGGGACCGGG-CTGATC-CTTGAGTTACGCATTATGCCTCT
1 AGCAGGATCGAC-AGCACGCAAAGGGGGACCGGGTC-GATCTC-CGACTTACGCATTATGCCTCT
* *
15985975 CTGGCTGGGTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
63 CCGGCTGGGTGAGCGCCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCAT
15986035 CCTCAATCTA
Statistics
Matches: 237, Mismatches: 47, Indels: 17
0.79 0.16 0.06
Matches are distributed among these distances:
170 26 0.11
171 203 0.86
172 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (171 bp):
AGCAGGATCGACAGCACGCAAAGGGGGACCGGGTCGATCTCCGACTTACGCATTATGCCTCTCCG
GCTGGGTGAGCGCCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGC
Found at i:15987201 original size:26 final size:26
Alignment explanation
Indices: 15987165--15987217 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15987155 GTTGACTTAG
*
15987165 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15987191 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15987217 G
1 G
15987218 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Done.