Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 131 of 402
Found at i:15993823 original size:26 final size:26
Alignment explanation
Indices: 15993787--15993837 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15993777 TGACTTAGGC
15993787 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGTCTAAGG
*
15993813 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
15993838 ATCAGACCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGG
Found at i:15994488 original size:25 final size:26
Alignment explanation
Indices: 15994450--15994501 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
15994440 GTTGACTTAG
15994450 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15994476 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15994501 G
1 G
15994502 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15994957 original size:675 final size:667
Alignment explanation
Indices: 15993575--15994971 Score: 1621
Period size: 675 Copynumber: 2.1 Consensus size: 667
15993565 GTGACACCTG
* * *
15993575 CACGCTCGTTTCGTGGGTTAGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGAAC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAAAC
* * *
15993640 TGAGGGTAGTGGCAGCAGGACCGATAACGGGATCGGTAGCACGCAGAGAGGGATCGGGCTGATCC
66 CGAGGGTAGTGGCAGCAAGACCGAGAACGGGATCGGTAGCACGCAGAGAGGGATCGGGCTGATCC
* * * * * *
15993705 TCGACTTGCGCATTATACCTCTCCGGTTGGCCTCTCCGATCGGCTGTGTGCTCGTACACTCGTTT
131 TCGACTTGCGCATTATACCTCT-CGATCGGCCTCTACGATCGGCTGAGCGCTCGCACACTCGTTT
*
15993770 CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCT
195 CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
15993835 AAGATCAGACCACGAGGGTTGCGGTAGTAGGATCGCAGCACGCAGGGGAACCGGGCCGATCCCTT
260 AAGATCAGACCACGAGGGTTGCAGTAGCAGAATCGCAGCACGCAAGGGAACCGGGCCGATCCCTT
*
15993900 ACGCATTCTACCTCTCCCACGGTGAGCTCCGCACGCCCTTCCGTGGGTTGGCTTAGGCATAGGGA
325 ACGCATTCTACCTCTCCCACGGTGAGCTCCGCACCCCCTTCCGTGGGTTGGCTTAGGCATAGGGA
* * * * ***
15993965 GTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAACGGAACCGACAGAATGTAGA
390 GTTCATTCCATCTCTAAGCCCAAGCCAGACAGAGGGTTGTGGCAACGGAACCGACAGAACACAGA
* * *
15994030 GGGGGACCAGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGACTCAATCCCCGTACGCT
455 GGGGGACCAGGCCAATCCCTGACTTGCGCATTATGCCTCTTCGGTCGACTCAAGCCCCGAACGCT
* * * **
15994095 CGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGG
520 CGTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAAACGAGGG
* * * *
15994160 TTACAGCAGATCGACAGCACGCACGGTGGACTGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTC
585 TTACAGCAGATCGACAGCACGCAAGGTGGACCGGGCAGATCCTCGGCTTGCGCATTCTACCTCTC
15994225 CGATCGGCTGAGCGCCCA
650 CGATCGGCTGAGCGCCCA
*
15994243 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCAAAC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAAAC
* * * * * * *
15994308 CG-GGGTTGTGGTAGCAAGACCG-GCAGGGAGATCGGTAGCACGTATAGGGGGATCGGGCTGATC
66 CGAGGGTAGTGGCAGCAAGACCGAGAACGG-GATCGGTAGCACGCAGAGAGGGATCGGGCTGATC
* * * *
15994371 C-CAGGCTTGCGCATTATGCCTCT-TATCGGCCTCTACGCTCGGCTGAGCG-TC-CACACGCTCG
130 CTC-GACTTGCGCATTATACCTCTCGATCGGCCTCTACGATCGGCTGAGCGCTCGCACA--CTCG
* *
15994432 TTTCGTTGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATAC-GAGTTCATTCCCAG
192 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
15994496 TCTAAGATCAGACCAGACCGAGGGTTGCATTAGCAGAATCGATAGCACGTAAGGGAACCGGGCCG
257 TCTAAGATCAGACC--A-CGAGGGTTGCAGTAGCAGAATCG-CAGCACGCAAGGGAACCGGGCCG
** * * *
15994561 ATCCCCGTCTTGTGCATTCTGCCTCTCCGGC-CAGATGAG-TGGCCCGC-CCCCCGTTTCGTGGG
318 AT--CC--CTTACGCATTCTACCTCTCC--CAC-GGTGAGCT---CCGCACCCCC-TTCCGTGGG
* * * **
15994623 TTGGC-TAGGCATAGGGAGTTCATTCCATCTCTCAGCCCAAGCCGGATAGAGGGTTGTGGCAGTG
372 TTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCAAGCCAGACAGAGGGTTGTGGCAACG
* * ** * * * * *
15994687 GGATCGGTAGCACACAGAGGGTGACC-GGTCGAT-CCTCGACTTGCGCATTATGCCTCTT-TGTC
437 GAACCGACAGAACACAGAGGGGGACCAGGCCAATCCCT-GACTTGCGCATTATGCCTCTTCGGTC
* * *
15994749 GGCTC-AGCGTCCGAACGCTCGTTTCGTGGGTTTAACTTAGGCATACGAAGTTCA-TCCCAGTCT
501 GACTCAAGC-CCCGAACGCTCGTTTCATGGG-TTAACTTAGGCATACGAAGTTCATTCCCAGTCT
* * *
15994812 AAGATCGGATC-AAACGAGGGTTACGGCAGTAGATCGACAGTATG-AAGG-GGAACCGGGCCAG-
564 AAGATCGGATCGAAACGAGGGTTA---CAGCAGATCGACAGCACGCAAGGTGG-ACCGGG-CAGA
* *
15994873 TCCTCGGCTTGCGCATTCTACCTCTCCGATCGGCT-AGGCGGCCG
624 TCCTCGGCTTGCGCATTCTACCTCTCCGATCGGCTGA-GCGCCCA
* * *
15994917 TACGCCTCGTTCCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15994972 ATACGAAATT
Statistics
Matches: 616, Mismatches: 84, Indels: 51
0.82 0.11 0.07
Matches are distributed among these distances:
663 3 0.00
664 30 0.05
665 70 0.11
666 5 0.01
667 86 0.14
668 84 0.14
670 2 0.00
672 28 0.05
673 53 0.09
674 102 0.17
675 136 0.22
676 17 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (667 bp):
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAAAC
CGAGGGTAGTGGCAGCAAGACCGAGAACGGGATCGGTAGCACGCAGAGAGGGATCGGGCTGATCC
TCGACTTGCGCATTATACCTCTCGATCGGCCTCTACGATCGGCTGAGCGCTCGCACACTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCACGAGGGTTGCAGTAGCAGAATCGCAGCACGCAAGGGAACCGGGCCGATCCCTTA
CGCATTCTACCTCTCCCACGGTGAGCTCCGCACCCCCTTCCGTGGGTTGGCTTAGGCATAGGGAG
TTCATTCCATCTCTAAGCCCAAGCCAGACAGAGGGTTGTGGCAACGGAACCGACAGAACACAGAG
GGGGACCAGGCCAATCCCTGACTTGCGCATTATGCCTCTTCGGTCGACTCAAGCCCCGAACGCTC
GTTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAAACGAGGGT
TACAGCAGATCGACAGCACGCAAGGTGGACCGGGCAGATCCTCGGCTTGCGCATTCTACCTCTCC
GATCGGCTGAGCGCCCA
Found at i:15995514 original size:26 final size:25
Alignment explanation
Indices: 15995484--15995534 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
15995474 TGGCTTAGGC
15995484 ATACGGAGTTCATTCCATGTCTAAGA
1 ATACGGAGTTCATTCCA-GTCTAAGA
*
15995510 ATACGGAGTTCATTCCAGTGTAAGA
1 ATACGGAGTTCATTCCAGTCTAAGA
15995535 GTTTGAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (25 bp):
ATACGGAGTTCATTCCAGTCTAAGA
Found at i:15996387 original size:26 final size:26
Alignment explanation
Indices: 15996357--15996409 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15996347 GTTGGCTTAG
15996357 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15996383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15996409 G
1 G
15996410 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15996726 original size:171 final size:168
Alignment explanation
Indices: 15996419--15996736 Score: 456
Period size: 171 Copynumber: 1.9 Consensus size: 168
15996409 GATCAGACCA
* * *
15996419 GACCGAGGGTTGCGGCAACAGGACCAGCTATAGGATCGACAGCACGTAGGGGATCGGGCCGATCC
1 GACCGAGGGTTGCGGCAACAGGACCAGCAACAGGATCGACAGCACGTAGGGGATCGAGCCGATCC
* * * * * * *
15996484 TCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACACTGGTTTCGTGGGTTGGCTT
66 CCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTC
15996549 AGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTCG
131 AGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTCG
* * * *
15996587 GACCGAGGGTTGTGGCAGCAGGACCGGCAACAGGATCGACAGCACGTAGAGAGGGATCGAGCTGA
1 GACCGAGGGTTGCGGCAACAGGACCAGCAACAGGATCGACAGCACGT--AG-GGGATCGAGCCGA
* **
15996652 TCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGA
63 TCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGA
15996717 CTCAGGCATACGGAGTTCAT
128 CTCAGGCATACGGAGTTCAT
15996737 CCCCAATCTA
Statistics
Matches: 130, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
168 42 0.32
170 2 0.02
171 86 0.66
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (168 bp):
GACCGAGGGTTGCGGCAACAGGACCAGCAACAGGATCGACAGCACGTAGGGGATCGAGCCGATCC
CCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTC
AGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTCG
Found at i:15996749 original size:171 final size:168
Alignment explanation
Indices: 15996383--15996750 Score: 452
Period size: 171 Copynumber: 2.2 Consensus size: 168
15996373 CCATGTCTAA
*
15996383 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAACAGGACCAGC
1 GCATACGGAGTTCA-TCCCAGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAACAGGACCAGC
* * * * * *
15996447 TATAGGATCGACAGCACGTAGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGATC
65 AACAGGATCGACAGCACGTAGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACC
* * * *
15996512 GACTGAGCGCCCGTACACTGGTTTCGTGGGTTGGCTTAG
130 GACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTCAG
** * * * * * *
15996551 GCATACGGAGTTCATTTCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGGC
1 GCATACGGAGTTCATCCCA-GTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAACAGGACCAGC
*
15996615 AACAGGATCGACAGCACGTAGAGAGGGATCGAGCTGATCCCCGGCTTACGCATTATGCCTCTCCG
65 AACAGGATCGACAGCACGT--AG-GGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCG
* **
15996680 ACCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTCAG
127 ACCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTCAG
*
15996722 GCATACGGAGTTCATCCCCAATCTAAGCA
1 GCATACGGAGTTCAT-CCCAGTCTAAGCA
15996751 TACAGAGTTC
Statistics
Matches: 167, Mismatches: 27, Indels: 9
0.82 0.13 0.04
Matches are distributed among these distances:
167 3 0.02
168 64 0.38
169 3 0.02
170 2 0.01
171 93 0.56
172 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (168 bp):
GCATACGGAGTTCATCCCAGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAACAGGACCAGCA
ACAGGATCGACAGCACGTAGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
ACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTCAG
Found at i:15997273 original size:26 final size:26
Alignment explanation
Indices: 15997223--15997275 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15997213 GTTTACTGAG
* *
15997223 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
15997249 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
15997275 G
1 G
15997276 ATTTTGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:15998252 original size:159 final size:162
Alignment explanation
Indices: 15998074--15998442 Score: 410
Period size: 159 Copynumber: 2.3 Consensus size: 162
15998064 CGCACGTCCA
* * *
15998074 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-CC-AGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA-ACCGAGGG
** * * * * * *
15998137 TTGTGGCAGCGGGACCCCCAGCACGCAGAG-GTGGACCGGGTCGATCCCTGACTTGCGCATTATG
65 TTACGGCAGCAGGACCCACAGCACGCAG-GTGGGGACCAGGCCGATCCCTGACTAGCGCATTATG
15998201 CCTCTCCGACCAGCTCAGTGCCCGCA-C-GCTCG
129 CCTCTCCGACCAGCTCAGTGCCCGCACCAGCTCG
* * * * *
15998233 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGG
* * * * * * *
15998296 TTACGGTAGCAGGATCGACAGCACGTAGGTGGGGACCAGGCCGATCCCTGGCTAGTGCATTCTGC
65 TTACGGCAGCAGGACCCACAGCACGCAGGTGGGGACCAGGCCGATCCCTGACTAGCGCATTATGC
* *
15998361 CTCTTCGACCAGCTGAGTGCCCGCACGCATGCTCG
130 CTCTCCGACCAGCTCAGTGCCCGCAC-CA-GCTCG
*
15998396 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15998443 TATGGAGTTC
Statistics
Matches: 171, Mismatches: 29, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
158 4 0.02
159 116 0.68
160 4 0.02
161 1 0.01
162 3 0.02
163 42 0.25
164 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (162 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGT
TACGGCAGCAGGACCCACAGCACGCAGGTGGGGACCAGGCCGATCCCTGACTAGCGCATTATGCC
TCTCCGACCAGCTCAGTGCCCGCACCAGCTCG
Found at i:15998443 original size:26 final size:26
Alignment explanation
Indices: 15998414--15998466 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15998404 GTTGGCTTAG
15998414 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
15998440 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15998466 G
1 G
15998467 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15999126 original size:159 final size:159
Alignment explanation
Indices: 15998889--15999635 Score: 626
Period size: 158 Copynumber: 4.7 Consensus size: 159
15998879 GGCAGCAAGT
* * * * * * * * * *
15998889 AGGGAGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCTG-CTGGCTGAGCGCCTGCAC
1 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCC-GACCGGCTCAGCGCCCGTAC
* * * * *
15998953 ACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACCT
65 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACCT
* *
15999017 AGGGTTGTGGCAGCTGGACC-AGCAGCATGC
130 AGGGTTGCGGCAGCAGGACCGA-CAGCATGC
* ** * * *
15999047 AGAGGGGGACCGAACCGATCCCCGGCTTGCGCATTATGCCTCGT-CGATCGGCTCAGTGCCCGTA
1 AG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTC-TCCGACCGGCTCAGCGCCCGTA
* * * * * * *
15999111 CGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCAAGTCTAAG-ATCGGACTGGA-C
64 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACC
* * *
15999174 TGAGGGTTGCGACAGCAGGACTGACAGCATGT
129 T-AGGGTTGCGGCAGCAGGACCGACAGCATGC
* * * ** * *
15999206 AGGGGGGATCGGGCCGGA-CCCCGACTTGCGCATTCTACCTCTCCGGCCGATTGAGCCCCCGTAC
1 AGGGGGGATCGGGCC-GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGTAC
* * * * * *
15999270 GCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG--GA-ACCG
65 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACCT
* *
15999332 A-GGTTGTGGCAGC-GAGACCGGCAGCATGC
130 AGGGTTGCGGCAGCAG-GACCGACAGCATGC
* * *
15999361 AGAGGGGGATCGGGCCGATCCCC-AGCTTGCGCATTATTCCTTTTCG-CTCGGCTCAGCGCCCGT
1 AG-GGGGGATCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGAC-CGGCTCAGCGCCCGT
* * ** * * *
15999424 ACGCTCGTTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAAG-ATCGGACTGGA
63 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACTAGA
* * * *
15999487 CCAAGGGTTGCGGTAGCAGGACCGATAGCACGC
127 CCTAGGGTTGCGGCAGCAGGACCGACAGCATGC
* * * * * *
15999520 AGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCCCATACG
1 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGTACG
* * * * *
15999585 CTTGTTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCTATCTCTAAGCA
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15999636 TATGGAGTTC
Statistics
Matches: 464, Mismatches: 100, Indels: 49
0.76 0.16 0.08
Matches are distributed among these distances:
154 1 0.00
155 29 0.06
156 90 0.19
157 7 0.02
158 187 0.40
159 147 0.32
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGTACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAGACCTA
GGGTTGCGGCAGCAGGACCGACAGCATGC
Found at i:15999443 original size:314 final size:317
Alignment explanation
Indices: 15998954--15999634 Score: 947
Period size: 314 Copynumber: 2.2 Consensus size: 317
15998944 CGCCTGCACA
* * *
15998954 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCTAG
1 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGAGACCGAG
*
15999019 GGTTGTGGCAGCTGGACCAGCAGCATGCAGAGGGGGACCGAACCGATCCCCGGCTTGCGCATTAT
66 GGTTGTGGCAGCTGGACCAGCAGCATGCAGAGGGGGACCGAACCGATCCCCAGCTTGCGCATTAT
* * **
15999084 GCCTCGTCGATCGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCA
131 GCCTCGTCGATCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCA
** * * *
15999149 TTCCAAGTCTAAGATCGGACTGGACTGAGGGTTGCGACAGCAGGACTGACAGCATGTAGGGGGGA
196 TTCCAAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGA
* * *
15999214 TCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGGCCGATTGAGCCCCCGTACG
261 TCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGACCGATTGAACCCCCATACG
*
15999271 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-GA-ACCGA-
1 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGAGACCGAG
* * **
15999333 GGTTGTGGCAGC-GAGACCGGCAGCATGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTA
66 GGTTGTGGCAGCTG-GACCAGCAGCATGCAGAGGGGGACCGAACCGATCCCCAGCTTGCGCATTA
* ** * * *
15999397 TTCCTTTTCGCTCGGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAAAGTTC
130 TGCCTCGTCGATCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTC
* ** *
15999462 ATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAGCAGGACCGATAGCACGCAGGGGGG
195 ATTCCAAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGG
* * * *
15999527 ATCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCCCATACG
260 ATCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGACCGATTGAACCCCCATACG
** * * * * *
15999585 CTTGTTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCTATCTCTAAGC
1 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15999635 ATATGGAGTT
Statistics
Matches: 320, Mismatches: 43, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
313 1 0.00
314 261 0.82
315 4 0.01
316 1 0.00
317 53 0.17
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (317 bp):
CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGAGACCGAG
GGTTGTGGCAGCTGGACCAGCAGCATGCAGAGGGGGACCGAACCGATCCCCAGCTTGCGCATTAT
GCCTCGTCGATCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCA
TTCCAAGTCTAAGATCGGACTGGACCAAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGA
TCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGACCGATTGAACCCCCATACG
Found at i:16000007 original size:159 final size:158
Alignment explanation
Indices: 15999708--16000008 Score: 467
Period size: 159 Copynumber: 1.9 Consensus size: 158
15999698 GCAGGATCGG
* *
15999708 CAGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTGAATG
1 CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCCCATTCTACCTCTCCAGCCGACTGAATG
* *
15999773 CCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTC
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGAAGTTCATTCCATGTCTAAGCCCCAGTC
15999838 GGACTAAGGGTTCTGGTAGTGGGACCGA
131 GGACTAAGGGTTCTGGTAGTGGGACCGA
* * * * * *
15999866 CAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCCCATTCTACCTCTCTAGCCGACTGAGT
1 CAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCCCATTCTACCTCTCCAGCCGACTGAAT
** *
15999931 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCCAGT
65 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGAAGTTCATTCCATGTCTAAGCCCCAGT
*
15999996 CGGACTGAGGGTT
130 CGGACTAAGGGTT
16000009 GTGGCAGTAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
158 9 0.07
159 119 0.93
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCCCATTCTACCTCTCCAGCCGACTGAATG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGAAGTTCATTCCATGTCTAAGCCCCAGTC
GGACTAAGGGTTCTGGTAGTGGGACCGA
Found at i:16000231 original size:513 final size:505
Alignment explanation
Indices: 15999198--16000650 Score: 1395
Period size: 513 Copynumber: 2.8 Consensus size: 505
15999188 GCAGGACTGA
* * *
15999198 CAGCATGTAGGGGGGATCGGGCCGGA-CCCCGACTTGCGCATTCTACCTCTCCGGCCGATTGAGC
1 CAGCATGCAGGGGGGATCGGGCC-GATCCCCG-CTTGCGCATTCTACCTCTCCAGCCGACTGAGC
* *
15999262 CCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
64 GCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCCAGT
* ** * * * * * *
15999326 -GAACCGA-GGTTGTGGCAGCGAGACCGGCAGCATGCAGAGGGGGATCGGGCCGATCCCCAGCTT
128 CGGACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTT
* * * * * * *
15999389 GCGCATTATTCCTTTTCGCTCGGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATA
193 GCCCATTATACCTTCTAGCTCGACTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGACATA
* * * *
15999454 CAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGTAGCAGGACCGATAGCACG
258 CAAAGTTCATTCCCAGTCTAAGACCAGACTGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACG
* * * * *
15999519 CAGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCCCATAC
323 CAGGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAACGCCCACAC
* * * *
15999584 GCTTGTTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCTATCTCTAAGCATATGGAGTTCATT
388 GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTATCTCTAAGCATATGGAGTTCATT
*
15999649 CCCAATGTAAGATCGAACTAGATCGAAGGTTGTGATAACAGGAACAGCAGCAGGATCGG
453 CCCAATCTAAGATCGAACTAGATCGAAGG-TGT-ATAACA-G---AGCAGCAGGATCGG
* **
15999708 CAGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTGAATG
1 CAGCATGCAGGGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTACCTCTCCAGCCGACTGAGCG
* * ** *
15999773 CCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCCCCAGTC
* * *
15999838 GGACTAAGGGTTCTGGTAGTGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTG
129 GGACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTG
* * * *
15999903 CCCATTCTACCTCTCTAGC-CGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGACATA
194 CCCATTATACCT-TCTAGCTCGACTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGACATA
** * * **
15999967 CGGAGTTCATT-CCATGTCTAAGCCCCAGTC-GGACTGAGGGTTGTGGCAGTACGACCAGCAGCG
258 CAAAGTTCATTCCCA-GTCTAAG-ACCAGACTGGACCAAGGG-T-T-GC-G---G--CAGCA---
* * * *
16000030 GGATCGACAGCATGCAGAGGGGGA-CTGGGCTGATCCCCGACTTGCACATTATGCCTCTTCGACC
309 GGACCGACAGCACGCAG-GGGGGATC-GGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACC
* * *
16000094 GGCTGAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCTCTA-GTCTA
372 GGCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT-TCTATCTCTA
* * * *
16000158 AGCATAT-GAGTTCATTCCCAGTCTAAGATCGGA-TCAGATCG-AGG-GT-T-AC-G-GTAGTAG
436 AGCATATGGAGTTCATTCCCAATCTAAGATCGAACT-AGATCGAAGGTGTATAACAGAGCAGCAG
16000215 GATCGG
500 GATCGG
** * * * * * *
16000221 TGGCATGCAGGGGGGATCGGGCCAATCCCTGGATTGCGCATTCTGCGTCTCCAGTCGACTGAGCG
1 CAGCATGCAGGGGGGATCGGGCCGATCCC-CGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCG
* * *
16000286 CCCGTACGCCCGTTTTGTGGGCTGGATTAGGCATAATGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCAT-ACGAGTTCATTCCATGTCTAAGCCCCAGTC
*
16000351 GGACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
129 GGACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTG
** * * * * * ** *
16000416 CGTATTATGCC-TCTTCGGC-C-AGCTCAGTGCCCGGACACTCGTTTCATGGGTTGACTTAGGCA
194 CCCATTATACCTTC-T-AGCTCGA-CTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGACA
** * * * * * * **
16000478 TACGGCA-TTCATTCCCAGTCTATGATCC-GACCGAACCAAGGGTTGTGGTAGCAGGATCGATGG
256 TAC-AAAGTTCATTCCCAGTCTAAGA-CCAGACTGGACCAAGGGTTGCGGCAGCAGGACCGACAG
* * * * * * *
16000541 CACGCAATGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CTAGTCGGCTGAACGC
319 CACGC-AGGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGA-CCGGCTGAACGC
* * * * *
16000605 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
382 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTC
16000651 CACGTCTAAG
Statistics
Matches: 778, Mismatches: 128, Indels: 84
0.79 0.13 0.08
Matches are distributed among these distances:
500 4 0.01
501 94 0.12
502 2 0.00
504 4 0.01
506 1 0.00
509 4 0.01
510 109 0.14
511 4 0.01
512 12 0.02
513 366 0.47
514 15 0.02
515 1 0.00
516 2 0.00
517 2 0.00
519 2 0.00
520 2 0.00
522 6 0.01
524 4 0.01
525 44 0.06
526 96 0.12
527 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (505 bp):
CAGCATGCAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCGC
CCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCC
CATTATACCTTCTAGCTCGACTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGACATACAA
AGTTCATTCCCAGTCTAAGACCAGACTGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAG
GGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAACGCCCACACGCT
CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTATCTCTAAGCATATGGAGTTCATTCCC
AATCTAAGATCGAACTAGATCGAAGGTGTATAACAGAGCAGCAGGATCGG
Found at i:16000679 original size:159 final size:158
Alignment explanation
Indices: 16000213--16000702 Score: 445
Period size: 159 Copynumber: 3.1 Consensus size: 158
16000203 TTACGGTAGT
* * * * * * * * * *
16000213 AGGATCGGTGGCATGCAGGGGGGATCGGGCCAATCCCTGGATTGCGCATTCTGCGTCTCCAGTCG
1 AGGATCGATAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCG
* * * * * * ** *
16000278 ACTGAGCGCCCGTACGCCCGTTTTGTGGGCTGGATTAGGCATAATGAGTTCATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
* *
16000343 CCCCAGT-CGGA-CTAAGGGTTCTGGCAGC
131 CCCCA-TCCAGATC-AAGGGTTGTGGCAGC
* * * * * * * *
16000371 GGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGTATTATGCCTCT-TCGGC
1 AGGATCGATAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-AGT
* * * * * * *
16000435 CAGCTCAGTGCCCGGACACTCGTTTCATGGGTTGACTTAGGCATACGGCA-TTCATTCC-CAGTC
64 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCAC-GTC
* * * * *
16000498 TATGATCCGA-CC-GAACCAAGGGTTGTGGTAGC
127 TAAG-CCCCATCCAG-ATCAAGGGTTGTGGCAGC
*
16000530 AGGATCGATGGCACGCAATGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTC
1 AGGATCGATAGCACGCAA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTC
* *
16000595 GGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
65 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
*
16000660 GCCCCATCCAGATCGAGGGTTGTGGCAGC
130 GCCCCATCCAGATCAAGGGTTGTGGCAGC
16000689 AGGATCGATAGCAC
1 AGGATCGATAGCAC
16000703 AATCGGCAAC
Statistics
Matches: 255, Mismatches: 63, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
158 17 0.07
159 230 0.90
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
AGGATCGATAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
CCCCATCCAGATCAAGGGTTGTGGCAGC
Found at i:16001146 original size:159 final size:160
Alignment explanation
Indices: 16000890--16001349 Score: 452
Period size: 159 Copynumber: 2.9 Consensus size: 160
16000880 ACCGAGAGTT
** * *
16000890 GCGGCAGCAGGATC-GACAGCACGTA-GGGGGGATCGGGCCGTTCCCCCGGCTTGCGCATTCTAC
1 GCGGCAGCAGGA-CGGACAGCACACATGGGGGGATCGGGCCGAT-CCCCGGCTTGCGCATTCTGC
* * * ** ** *
16000953 CTCTCCGACCGGC-CGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
64 CTCTTCGGCTGGCTC-AGCACCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * *
16001017 TCCATGTCTAAGCCCT-AGCCAGACTGAGGGTT
128 TCCATGTCTAAGCACTGAACCAGACTGAGGGTC
* ** * * * *
16001049 GTGGCAGTGGGACCGG-TAGCACACA-GAGGGGGATCGGACCGATCCCCAGCTTGCGCATTATGC
1 GCGGCAGCAGGA-CGGACAGCACACATG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGC
* *
16001112 CTCTTCGGCTGGCTCAGCACCCACACGCTTGTTTCGTGGGTTGGCTTATGCATATGGAGTTCATT
64 CTCTTCGGCTGGCTCAGCACCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
*
16001177 CTCA-GTCTAAG-ATTGAACCAGACTGAGGGTC
129 C-CATGTCTAAGCACTGAACCAGACTGAGGGTC
* * * * * *
16001208 GCGGTAGCAGGATGGACAGCACGCATGGGGGGATCGGGCTGATCCCTGGCTTGCACATTCTGCCT
1 GCGGCAGCAGGACGGACAGCACACATGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCT
* * * * * *
16001273 CTTCGG-TCGACTGAGCACCCCACACACTTGTTTCGTAGGTTGGCATAGGCATACAGAGTTCATT
66 CTTCGGCT-GGCTCAGCA-CCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
16001337 CCATGTCTAAGCA
129 CCATGTCTAAGCA
16001350 TACGGAGTTC
Statistics
Matches: 244, Mismatches: 46, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
158 4 0.02
159 172 0.70
160 67 0.27
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCGGCAGCAGGACGGACAGCACACATGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCT
CTTCGGCTGGCTCAGCACCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
ATGTCTAAGCACTGAACCAGACTGAGGGTC
Found at i:16001177 original size:686 final size:672
Alignment explanation
Indices: 15999718--16001348 Score: 1640
Period size: 686 Copynumber: 2.4 Consensus size: 672
15999708 CAGCATGCAG
* * * * * * *** * *
15999718 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCC-GACTGAATGCCCGCACGC
1 GGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAG-CTCAGCACCCACACAC
* * * ** * ** * *
15999782 TCGTTTCATTGGTTGGCTTAGGCATAC-GAAGTTCATT-CCATGTCTAAGCCCCAGTCGGACTAA
65 TCGTTTCATGGGTTGACTTAGGCATACGGCA-TTCATTCCCA-GTCTAAGATCGAACCAGACCAA
* ** * * * *
15999845 GGGTTC-TGGTAGTGGGACCGACAGCACGCAGA-GGGGGATCGGGTCGATCCTCGGCTTGCCCAT
128 GGG-TCGCGGTAGCAGGATCGACAGCACGCA-ATGGGGGATCGGGCCGATCCCCGGCTTGCACAT
* * ** * *
15999908 TCTACCTCTCTAGCCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGACATACGGAGT
191 TCTGCCTCTCTAGTCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* * ***
15999973 TCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTACGACCAGCAGCGGGATCGAC
256 TCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCACGACCAGCAGCACAATCGAC
* * * *
16000038 AGCATGCAGAGGGGGACTGGGCTGATCCCCGACTTGCACATTATGCCTCTTCGACCGGCTGAGCG
321 AACATGCAGAGGGGGACCGGACTGATCCCCGACTTGCACATTATGCCTCTTCGACCGGCTGAGCA
* * * *
16000103 CCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCTCTAGTCTAAGCATATGAG
386 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATATGAG
* * * * *** *
16000168 TTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGTAGGATCGGTGGCATGCAGGG
451 TTCATTCCCAGTCTAAGATCGGATCAGACCGAGAGTTACGGCAGCAGGATCGACAGCACGCAGGG
* * * * * *
16000233 GGGATCGGGCCAATCCCTGGATTGCGCATTCTGCGTCTCCAGTCGACTGAGCGCCCGTACGCCCG
516 GGGATCGGGCCAATCCCCGGATTGCGCATTCTACCTCTCCAGCCGACCGAGCACCCGTACGCCCG
* * * *
16000298 TTTTGTGGGCTGGATTAGGCATAATGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAAGGGTT
581 TTTCGTGGGCTGGATTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTT
*
16000363 CTGGCAGCGGGACCGACAGCACGCAGA
646 CTGGCAGCGGGACCGACAGCACACAGA
** * * ** **
16000390 GGGGGACCGGGTCGATCCCCGGCTTGCGTATTATGCCTCTTCGGCCAGCTCAGTGCCCGGACACT
1 GGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCACACACT
*
16000455 CGTTTCATGGGTTGACTTAGGCATACGGCATTCATTCCCAGTCTATGATCCG-ACC-GAACCAAG
66 CGTTTCATGGGTTGACTTAGGCATACGGCATTCATTCCCAGTCTAAGAT-CGAACCAG-ACCAAG
* * ** * *
16000518 GGTTGTGGTAGCAGGATCGATGGCACGCAATGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCT
129 GGTCGCGGTAGCAGGATCGACAGCACGCAATGGGGGATCGGGCCGATCCCCGGCTTGCACATTCT
* *
16000583 GCCTCTCTAGTCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
194 GCCTCTCTAGTCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
16000648 TTCCACGTCTAAGCCCCA-TCCAGA-TCGAGGGTTGTGGCAGCAGGATC-GATAGCACAATCGGC
259 TTCCATGTCTAAGCCCCAGT-CAGACT-GAGGGTTGTGGCAGCACGACCAG-CAGCACAATCGAC
* * * *
16000710 AACATGCAGATGGGGACCGGACTGAT-CTCGGCTTGCACATTATGCCTCTCCGATCGGCCTCTCT
321 AACATGCAGAGGGGGACCGGACTGATCCCCGACTTGCACATTATGCCTCT----TC-G--AC-C-
* * *
16000774 GGCCGGTTGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCCAGT
377 GG-C---TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGT
* * *
16000839 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGA-CTGGACCGAGAGTTGCGGCAGCAGGAT
438 CTAAGCATAT-GAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGAGTTACGGCAGCAGGAT
* ** * *
16000903 CGACAGCACGTAGGGGGGATCGGGCCGTTCCCCCGGCTTGCGCATTCTACCTCTCC-GACCGGCC
501 CGACAGCACGCAGGGGGGATCGGGCCAAT-CCCCGGATTGCGCATTCTACCTCTCCAG-CCGACC
* * *
16000967 GAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
564 GAGCACCCGTACGCCCGTTTCGTGGGCTGGATTAGGCATAAGGAGTTCATTCCATGTCTAAGCCC
* * * * **
16001032 TAGCCAGACTGAGGGTTGTGGCAGTGGGACCGGTAGCACACAGA
629 CAGCCAGACTAAGGGTTCTGGCAGCGGGACCGACAGCACACAGA
* ** *
16001076 GGGGGATCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCACCCACACGCT
1 GGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCACACACT
* * * * * * * **
16001141 TGTTTCGTGGGTTGGCTTATGCATATGG-AGTTCATTCTCAGTCTAAGATTGAACCAGACTGAGG
66 CGTTTCATGGGTTGACTTAGGCATACGGCA-TTCATTCCCAGTCTAAGATCGAACCAGACCAAGG
* * *
16001205 GTCGCGGTAGCAGGATGGACAGCACGC-ATGGGGGGATCGGGCTGATCCCTGGCTTGCACATTCT
130 GTCGCGGTAGCAGGATCGACAGCACGCAAT-GGGGGATCGGGCCGATCCCCGGCTTGCACATTCT
* * * * * * *
16001269 GCCTCT-TCGGTCGACTGAGCAC-CCCACACACTTGTTTCGTAGGTTGGCATAGGCATACAGAGT
194 GCCTCTCT-AGTCGACTGA--ACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
16001332 TCATTCCATGTCTAAGC
256 TCATTCCATGTCTAAGC
16001349 ATACGGAGTT
Statistics
Matches: 784, Mismatches: 141, Indels: 53
0.80 0.14 0.05
Matches are distributed among these distances:
671 27 0.03
672 270 0.34
673 7 0.01
675 2 0.00
676 1 0.00
678 1 0.00
679 1 0.00
680 2 0.00
681 1 0.00
684 61 0.08
685 72 0.09
686 286 0.36
687 51 0.07
688 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (672 bp):
GGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCACACACT
CGTTTCATGGGTTGACTTAGGCATACGGCATTCATTCCCAGTCTAAGATCGAACCAGACCAAGGG
TCGCGGTAGCAGGATCGACAGCACGCAATGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGC
CTCTCTAGTCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCACGACCAGCAGCACAATCGACAACAT
GCAGAGGGGGACCGGACTGATCCCCGACTTGCACATTATGCCTCTTCGACCGGCTGAGCACCCAC
ACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATATGAGTTCAT
TCCCAGTCTAAGATCGGATCAGACCGAGAGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGAT
CGGGCCAATCCCCGGATTGCGCATTCTACCTCTCCAGCCGACCGAGCACCCGTACGCCCGTTTCG
TGGGCTGGATTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTCTGGC
AGCGGGACCGACAGCACACAGA
Found at i:16001357 original size:26 final size:26
Alignment explanation
Indices: 16001321--16001373 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16001311 GTTGGCATAG
16001321 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16001347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16001373 G
1 G
16001374 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16002402 original size:158 final size:157
Alignment explanation
Indices: 16002057--16002550 Score: 355
Period size: 158 Copynumber: 3.1 Consensus size: 157
16002047 TAAGCATATA
** * * * * *
16002057 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTAGAAATAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGTAGAAACAGGACCAGCAGCACGCA
* * * * * *
16002122 GGGTGGATCGGGTCGATCCTCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCACCCGCATGC
66 GGGTGGACCGGGCCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTCAGCACCCGCACGC
* * *
16002187 CTGTTTCGTGGGTTGGCTTAGGGATAG
131 CTATTTCGTGGGTTGACTTAGGCATAG
* * * ** * * *
16002214 GTAGTTCAAT-CGATGTGTAAGCCCCA-ACCAGACCGAGAGTTGT-GGAGCGGGACCAGCAGCAC
1 G-AGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGAGTTGTAGAAACAGGACCAGCAGCAC
*** *
16002276 GCCGAGGG-GGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCACCCG
63 G-C-AGGGTGGACCGGGCCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTCAGCACCCG
*
16002340 CACG-CTCATTTCTTGGGTTGACTTAGGCATACG
126 CACGCCT-ATTTCGTGGGTTGACTTAGGCATA-G
* * *
16002373 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GGT-TACG--ACAGCAGCATTGACAGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGTA-GAAACAGGACCA--G-CAGCA
* * * * * * * * **
16002434 CACAGGAG-GGATCGGGTCGATCCACGGCTTGCACATTCTGCCTCTCCGACCGACTAAGTGCCCG
62 CGCAGG-GTGGACCGGGCCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTCAGCACCCG
* * * *
16002498 CAC-ACTCATTTTGTGGGTTGGCTTAGGCATACA
126 CACGCCT-ATTTCGTGGGTTGACTTAGGCATA-G
16002531 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
16002551 CATATGGAGT
Statistics
Matches: 265, Mismatches: 55, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
156 6 0.02
157 28 0.11
158 217 0.82
159 14 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGTAGAAACAGGACCAGCAGCACGCA
GGGTGGACCGGGCCGATCCTCGGCTTACACATTATGCCTCTCCGACCGGCTCAGCACCCGCACGC
CTATTTCGTGGGTTGACTTAGGCATAG
Found at i:16008734 original size:26 final size:26
Alignment explanation
Indices: 16008697--16008749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16008687 GTTGACTTTG
16008697 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16008723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16008749 G
1 G
16008750 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16009181 original size:26 final size:26
Alignment explanation
Indices: 16009145--16009198 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16009135 GGGTTGGCTT
16009145 AGCATACGGAGTTCATT-CCATGTCTA
1 AGCATACGGAGTTCATTCCCA-GTCTA
*
16009171 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
16009197 AG
1 AG
16009199 AGTTTGAGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:16010111 original size:157 final size:159
Alignment explanation
Indices: 16009739--16010143 Score: 460
Period size: 158 Copynumber: 2.6 Consensus size: 159
16009729 ACCACCCGTT
* *
16009739 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGT
* * * * * * ** *
16009804 TGCCTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTGGCCGGACCGAGGGTTGGGGCAGCGG
66 TGCTTAGGCATACGGAGTTCATTCCCATATCTAAGACCAGACCGGACCGAGGGTTGGCACAGCAG
* * *
16009868 GACCGATAGCACGCAGAGGGGGACCGGGT
131 GACCGACAGCACGCAGAGGGGGACCAGGC
* *
16009897 CGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTT-AGCGCCCGTACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGG-TTGAGCGCCCGTACGCTCGTTTCGTGGG
* * *
16009961 TTGACTTAGGCATATGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCGAGGGTT-GCACAGT
65 TTG-CTTAGGCATACGGAGTTCATTCCCATATCTAAGACCAGACCGGACCGAGGGTTGGCACAGC
*
16010024 AGGATCGACAGCACGCAG-GGGGGACCAGGC
129 AGGACCGACAGCACGCAGAGGGGGACCAGGC
** * * ** ** * *
16010054 CGATCCCCGGCTTATGCATTCTACCTCTCTGACCGGTTGAGCGCCCACACACTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGT
* *
16010119 TGGCTTAAGCATACGGAGTTTATTC
66 T-GCTTAGGCATACGGAGTTCATTC
16010144 ATGTCTAAGC
Statistics
Matches: 208, Mismatches: 34, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
156 2 0.01
157 80 0.38
158 81 0.39
159 42 0.20
160 3 0.01
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.23
Consensus pattern (159 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGT
TGCTTAGGCATACGGAGTTCATTCCCATATCTAAGACCAGACCGGACCGAGGGTTGGCACAGCAG
GACCGACAGCACGCAGAGGGGGACCAGGC
Found at i:16010524 original size:158 final size:159
Alignment explanation
Indices: 16010252--16010666 Score: 389
Period size: 158 Copynumber: 2.6 Consensus size: 159
16010242 GACCGGGACG
* * * * * * * *
16010252 ATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTG
1 ATCCCCAGCTTATGCATTATGCCTCTTCGGCCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTG
* * * ** **
16010317 GCTT-TGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGAATCGA-GGGTTGTGGTAGTG
66 GCTTAT-GCATACGGAGTTCATTCCATGTCTAAGACCCCAGCAGAACCGAGGGGTTGCAGTAGCA
* *
16010379 GGA-CTGACAGCACGCAGAGGGAGA-CTGGGCC
130 GGATC-AACAGCACGCAGAGGG-GATC-GAGCC
** * *
16010410 AATCCCTGGCTTATGCATTATGCCTCCTT-GGCCGGCTCA-TGCCCGCACGCTTGTTTCGTGGGT
1 -ATCCCCAGCTTATGCATTATGCCT-CTTCGGCCGACTCAGTGCCCGCACGCTCGTTTCGTGGGT
* * ** * *
16010473 TGACTTATGCATACGGAGTTCATTCTCA-GTCTAAGATCGGATCAG-ACCGAGGGGTTGCATTAG
64 TGGCTTATGCATACGGAGTTCATTC-CATGTCTAAGACCCCAGCAGAACCGAGGGGTTGCAGTAG
* *
16010536 CAGGATCAACAGCACGTAGAGGGGATCGAGTC
128 CAGGATCAACAGCACGCAGAGGGGATCGAGCC
* * * *
16010568 ATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCAGCTTATGCATTATGCCTCTTCGGCCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTG
* *
16010633 GCCTAGGCATACGGAGTTCATTCCATGTCTAAGA
66 GCTTATGCATACGGAGTTCATTCCATGTCTAAGA
16010667 ATACGGAGTT
Statistics
Matches: 208, Mismatches: 38, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
156 3 0.01
157 29 0.14
158 112 0.54
159 61 0.29
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (159 bp):
ATCCCCAGCTTATGCATTATGCCTCTTCGGCCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTG
GCTTATGCATACGGAGTTCATTCCATGTCTAAGACCCCAGCAGAACCGAGGGGTTGCAGTAGCAG
GATCAACAGCACGCAGAGGGGATCGAGCC
Found at i:16010677 original size:26 final size:26
Alignment explanation
Indices: 16010641--16010692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16010631 TGGCCTAGGC
16010641 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
16010667 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
16010693 TTTTGAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:16011667 original size:160 final size:159
Alignment explanation
Indices: 16011465--16011896 Score: 521
Period size: 160 Copynumber: 2.7 Consensus size: 159
16011455 GACAGCACGA
* * * * * *
16011465 AGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGTCCGCATGC
1 AGGGGGACTGGGCCGATCCCCGGTTTGCGCATTCTACCTCTCCGGTCGGTTGAACGCCCACATGC
* * *
16011530 CCGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTTCATGTCTACGCCCCAGC-GAAACCGAG
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG-AACCGAG
*
16011594 GGTTATGGCAGTGGGGACC-GACAGCACACAG
130 GGTTATGGCAGT-GGGACCAG-CAACACACAG
* * * * * **
16011625 AGGGGGACTGGGTCGATCCCCGGTTTACGCATTCTACCTCTCCGATCGGTTGAGCACCCACACAC
1 AGGGGGACTGGGCCGATCCCCGGTTTGCGCATTCTACCTCTCCGGTCGGTTGAACGCCCACATGC
*
16011690 CCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGG
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGG
* **
16011755 GTTGTGGCAGTGGGACCAGCAACACGTAG
131 GTTATGGCAGTGGGACCAGCAACACACAG
* * * * *
16011784 AGGGGGA-TCGGGCCGATCCTCGGTTTGCCCATTTTACCTCTCCGGACGGTTGAATGCCCACATG
1 AGGGGGACT-GGGCCGATCCCCGGTTTGCGCATTCTACCTCTCCGGTCGGTTGAACGCCCACATG
** * *
16011848 CTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
65 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
16011897 AGTTTGAGCC
Statistics
Matches: 230, Mismatches: 38, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
158 1 0.00
159 103 0.45
160 125 0.54
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
AGGGGGACTGGGCCGATCCCCGGTTTGCGCATTCTACCTCTCCGGTCGGTTGAACGCCCACATGC
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGG
GTTATGGCAGTGGGACCAGCAACACACAG
Found at i:16013969 original size:26 final size:26
Alignment explanation
Indices: 16013933--16013985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16013923 GTTGACTTAG
16013933 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16013959 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16013985 G
1 G
16013986 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16014504 original size:158 final size:159
Alignment explanation
Indices: 16013959--16015286 Score: 579
Period size: 158 Copynumber: 8.2 Consensus size: 159
16013949 CCCAGTCTAA
* * ** * *
16013959 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCTGGACCGTCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACCGGCA
* * * * * ** *
16014024 GTACGCAGAAGAGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTTGACCAGCTCAGCAC
66 GCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACTGGCTGAGCAC
* * *
16014089 CCGTATGCTCGTTTCATGGGTTGACTTAT
131 CCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * * * * *
16014118 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACCGGCA
** * * * * *
16014183 GCGTGCAG-GGGGGA-CTAGGCCAATCCCCGACTTGCACATTCTGCCTCTC-CAGTCGGCTGAGC
66 GCACGCAGAGGGGGATC-AGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACT-GGCTGAGC
* * * *
16014245 ACCCACATGCCCGTTTCATGGGTTGGCTTAG
129 ACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** ** * * * *
16014276 GCATAGGGAGTTCATT-CCATATCTAAGCCCCAACTGGACCGAGGGTTG-AGGTAACGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCA-GCAGCAGGACCGG
* * * * * *
16014339 CAACACGTAGAGGGGGATCGGGCCGATCCCAGACTTGCGCATTATGCATCTCTGACTGGCTTAGC
64 CAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACTGGCTGAGC
*
16014404 GCCCGCACGCTCGTTT-ATGGGTTGACTTAG
129 ACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * ** *
16014434 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGATTGCAGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACCGGCA
* * * * * * * * **
16014499 GCACG--TAGGGGGAAC-GGTCGGTCCCCGGCTTGCGCTTTCTGCCTCTCCGTTTGGCTGAGCAC
66 GCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACTGGCTGAGCAC
* * *
16014561 CCGTACGCTCATTTCGTGGGTT-AGCTTAG
131 CCGCACGCTCGTTTCATGGGTTGA-CTTAG
* ** * ** ** **
16014590 GCATACAGAGTTCATTCTAAGTCTAAG-CCCCAGCTAGAGTGAGGGTTGTGGTAGCATTACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGA-GG--GT--T-G------CAGC
* * * * * * * *
16014654 AGCGGGATCGGCAGCACGCAGAGAGGGATCAGGCTGATCCCCGGCTTACCCATTATGCCTCTCCG
53 AGCAGGACCGGCAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTG
*** * *
16014719 ACTGGCTGAG-TGTCGCACGCTCATTTCTTGGGTTGACTTAG
118 ACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *** * ** * *
16014760 GCATACAGACTTCA-TCCCTAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGA
1 GCATACGGAGTTCATTCCC-AGTCTAAG-AT-CGGA--CCGGACCGAGGGT-TG--CAG-C-AG-
* * * * * *
16014824 CTGAGGGTTGCGACAGCAGAATCGGCAGCATGCAGGGGGA-CAGAACCGAT-CCCTAGCTTGCGT
55 C--A-GG--AC--CGGCAG---C-AC-GCA-G-AGGGGGATCAG-GCCGATCCCCGA-CTTGCGC
* * * * * ** * * * *
16014887 ATTCTGCCTCTCCGGCCGACTGAGTGCCCGCACACCCGTTTCGTGGGTTGGCTTAG
104 ATTATGCCTCTCTGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * ** * * * ** * **
16014943 GCATAGGGAGTTCATTTCAAGTCTAAG-CCCCAGTCAGACCGACGGTTGTGGCAGCGGGACCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCAGCAGCAGGACCGGC
* * * * ** *
16015007 AGCACACAGAGGGGGACCAAGCCGATCCCCGACTTGCGCGTTATGCCTCTCTGGTTGGCTCAGCA
65 AGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACTGGCTGAGCA
* * *
16015072 CCCGAACGCTCATTTCGTGGGTTGACTTAG
130 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
16015102 GCATACAGAGTTCATTCCCAGTCTAAGATCGGGCCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACCGGCA
* * * * * * * * ** * *
16015167 GCATGCAG-GGGGGATCAGGTCGATCCACGGCTTGCGCATTCTACCTCTCCG-GTCGATTGAACG
66 GCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACT-GGCTGAGCA
* *
16015230 CCTGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGACTTAG
16015260 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16015287 CATACGAGTT
Statistics
Matches: 851, Mismatches: 259, Indels: 119
0.69 0.21 0.10
Matches are distributed among these distances:
155 49 0.06
156 49 0.06
157 11 0.01
158 257 0.30
159 228 0.27
160 11 0.01
161 3 0.00
162 2 0.00
163 1 0.00
165 4 0.00
166 6 0.01
167 1 0.00
168 21 0.02
169 3 0.00
170 54 0.06
171 39 0.05
173 3 0.00
174 3 0.00
175 6 0.01
176 1 0.00
178 2 0.00
179 8 0.01
180 4 0.00
181 7 0.01
182 34 0.04
183 42 0.05
184 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACCGGCA
GCACGCAGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACTGGCTGAGCAC
CCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:16014636 original size:314 final size:316
Alignment explanation
Indices: 16014036--16014642 Score: 718
Period size: 314 Copynumber: 1.9 Consensus size: 316
16014026 ACGCAGAAGA
* * * * * *
16014036 GGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTTGACCAGCTCAGCACCCGTATGCTCGT
1 GGATCAGGCCGATCCCAGACTTGCGCATTATGCATCTCTGACCAGCTCAGCACCCGCACGCTCGT
* * *
16014101 TTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTG
66 TTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTG
* * * ** ** *
16014166 CGGTAGTAGGATCGGTAGCGTGCAGGGGGGACTAGGCCAATCCCCGACTTGCACATTCTGCCTCT
131 CAGCAGCAGGATCGACAGCACGCAGGGGGAAC-AGGCCAATCCCCGACTTGCACATTCTGCCTCT
* * * **
16014231 CCAGTCGGCTGAGCACCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
195 CCAGTCGGCTGAGCACCCACACGCCCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCAT
*
16014296 ATCTAAGCCCCAACTGGACCGAGGGTTGAGGTAACGGGACCGGCAACACGTAGAGGG
260 ATCTAAGCCCCAACTAGACCGAGGGTTGAGGTAACGGGACCGGCAACACGTAGAGGG
* ** * *
16014353 GGATCGGGCCGATCCCAGACTTGCGCATTATGCATCTCTGACTGGCTTAGCGCCCGCACGCTCGT
1 GGATCAGGCCGATCCCAGACTTGCGCATTATGCATCTCTGACCAGCTCAGCACCCGCACGCTCGT
* **
16014418 TT-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGATTG
66 TTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTG
* * * ** * * *
16014482 CAGCAGCAGGATTGACAGCACGTAGGGGGAAC-GGTCGGTCCCCGGCTTGCGCTTTCTGCCTCTC
131 CAGCAGCAGGATCGACAGCACGCAGGGGGAACAGGCCAATCCCCGACTTGCACATTCTGCCTCTC
* ** * * *
16014546 C-GTTTGGCTGAGCACCCGTACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCTA-
196 CAG-TCGGCTGAGCACCCACACGCCCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCAT
* ** *
16014609 AGTCTAAGCCCCAGCTAGAGTGAGGGTTGTGGTA
260 A-TCTAAGCCCCAACTAGACCGAGGGTTGAGGTA
16014643 GCATTACCAG
Statistics
Matches: 239, Mismatches: 49, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
313 2 0.01
314 103 0.43
316 78 0.33
317 56 0.23
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (316 bp):
GGATCAGGCCGATCCCAGACTTGCGCATTATGCATCTCTGACCAGCTCAGCACCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGATTG
CAGCAGCAGGATCGACAGCACGCAGGGGGAACAGGCCAATCCCCGACTTGCACATTCTGCCTCTC
CAGTCGGCTGAGCACCCACACGCCCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATA
TCTAAGCCCCAACTAGACCGAGGGTTGAGGTAACGGGACCGGCAACACGTAGAGGG
Found at i:16015486 original size:195 final size:196
Alignment explanation
Indices: 16015152--16015510 Score: 479
Period size: 195 Copynumber: 1.8 Consensus size: 196
16015142 GAGGGTTGCG
* *
16015152 GCAGCAGGATCGACAGCATGCAGGGGGGATCAGGTCGATCCACGGCTTGCGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCACGGCTTGCGCATTCTACCTCTCC
** * * * * *
16015217 GGTCGATTGAACGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCATGT
* * * *
16015282 CTAAGCATAC-GAGTTCATTCCTAGTCTAGGATCGGTTCGGATCGAGGGTTGCGACAGTAGGACC
131 CTAAGCATACAAAGTGCATTCCCAGTCTAAGATCGGTTCGGATCGAGGGTTGCGACAGTAGGACC
16015346 A
196 A
* * * * *
16015347 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCACGGCTTGCGCATTCTACCTCTCC
* ** * *
16015412 GACCGGCTGTGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCA-G
66 GACCGACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCAT-CCCATG
*
16015476 TCTGAGCATACAAAGTGCATTCCCAGTCTAAGATC
130 TCTAAGCATACAAAGTGCATTCCCAGTCTAAGATC
16015511 TAACCAGACC
Statistics
Matches: 138, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
195 116 0.84
196 22 0.16
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (196 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCACGGCTTGCGCATTCTACCTCTCC
GACCGACTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCATGT
CTAAGCATACAAAGTGCATTCCCAGTCTAAGATCGGTTCGGATCGAGGGTTGCGACAGTAGGACC
A
Found at i:16016178 original size:26 final size:26
Alignment explanation
Indices: 16016142--16016194 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16016132 GTTGACTTAG
*
16016142 GCATATGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* *
16016168 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
16016194 G
1 G
16016195 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:16016684 original size:26 final size:26
Alignment explanation
Indices: 16016634--16016686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16016624 GTTGCCTTAG
*
16016634 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16016660 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCATTCCAT-ATCTAA
16016686 G
1 G
16016687 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16016873 original size:26 final size:26
Alignment explanation
Indices: 16016843--16016895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16016833 ATTAACTTAG
*
16016843 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
*
16016869 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
16016895 G
1 G
16016896 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:16017299 original size:11 final size:11
Alignment explanation
Indices: 16017283--16017308 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
16017273 CCGAGGCACT
16017283 ATCGTCGGAGC
1 ATCGTCGGAGC
16017294 ATCGTCGGAGC
1 ATCGTCGGAGC
16017305 ATCG
1 ATCG
16017309 CCGAAGAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.19
Consensus pattern (11 bp):
ATCGTCGGAGC
Found at i:16018429 original size:26 final size:26
Alignment explanation
Indices: 16018393--16018445 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16018383 GTTGGCTTAG
16018393 GCATATGGAGTTCATT-CCACGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
16018419 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16018445 G
1 G
16018446 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16018603 original size:184 final size:182
Alignment explanation
Indices: 16018234--16018771 Score: 623
Period size: 183 Copynumber: 2.9 Consensus size: 182
16018224 GTTGACTTAG
* * * *
16018234 GCATATGGAGTTCATTCCCAGTCTAACATCGGACCAGATCGAAGGTTGCGGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAAGGTTGCGGTAGCAGGATCGGCA
* * * * *
16018299 GCACACAGGGAGGGACTAGGTCGGTCCCCGACTTACGCATTCAGCCTCTCCGGTCGACTAAGCGC
65 GCACGCAGGG-GGGA-TAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * *
16018364 CCGCACGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAA
128 CCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTAATCCCACGTCTAA
* * * *
16018419 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGACCGGTA
1 GCATATGGAGTTCATTCCCAGTCTAAGATC-GATCAGACCGAAGGTTGCGGTAGCAGGATCGGCA
* * * * *
16018484 GCACGCAGGGGGGATTGTGTCGATCCCCCACTTACGGATTCTGCCTCTCCGGCCGGCTGAGCGTC
65 GCACGCAGGGGGGATAG-GTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* * * * *
16018549 CGTACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTAATCCC-CAGTCTAA
129 CGCACGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTAATCCCAC-GTCTAA
** * * * *
16018603 GCATACAGAGTTCATTCCCAGTC-AAGATCGAATCAGACTGATGGTTGCGGCAGCAGGATCAGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCG-ATCAGACCGAAGGTTGCGGTAGCAGGATCGGCA
* * * *
16018667 GCACGCATGGGGGATCGAG-CTGATCCCCGACTTACGCATTCTGCCTCTCTGGCCGATTGAGCGC
65 GCACGCAGGGGGGATAG-GTC-GATCCCCGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
* * *
16018731 CCGCACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTT
128 CCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTT
16018772 CATTCCATAT
Statistics
Matches: 297, Mismatches: 52, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
182 2 0.01
183 122 0.41
184 108 0.36
185 65 0.22
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGATCAGACCGAAGGTTGCGGTAGCAGGATCGGCAG
CACGCAGGGGGGATAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCG
CACGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTAATCCCACGTCTAA
Found at i:16019127 original size:26 final size:26
Alignment explanation
Indices: 16019098--16019150 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16019088 GTTGACTTAG
*
16019098 GCATAC-GAAGTTTATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
16019124 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16019150 G
1 G
16019151 AGGGTTGCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16019462 original size:158 final size:157
Alignment explanation
Indices: 16019150--16019610 Score: 378
Period size: 158 Copynumber: 2.9 Consensus size: 157
16019140 CCCAGTCTAA
* * * * * *
16019150 GAGGGTTGCGGCAGCAGGATCGCAGCACGCAGGGGGGACCAGGCCGATCGCCTGCTTGCGCATTC
1 GAGGGTTGTGGCAGCAGGACCGCAGCACGCAGAGGGGACCAGGCCGATCCCCAGCTTGCGCATTA
* * ** * * *
16019215 TGCCTCTCTAGCCGGCTGAGTGCCCGCACGCACATTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCGAGCCAGCCCAGCGCCCGCACGCACATTTCGTGGGTTGACTTAGGCATACGGAGTTC
16019280 ATTCCATGTCTAAGCCCCAGTCGGACC
131 ATTCCATGTCTAAGCCCCAGTCGGACC
* * * *
16019307 GAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATT
1 GAGGGTTGTGGCAGCAGGACCG-CAGCACGCAGAGGGGACCAGGCCGATCCCCAGCTTGCGCATT
* * * * * *
16019372 ATGCCTCTCCGA-TCAGCCCAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGTCATACGGAGT
65 ATGCCTCT-CGAGCCAGCCCAGCGCCCGCACGCACATTTCGTGGGTTGACTTAGGCATACGGAGT
** *
16019436 TCATTCCCA-GTCTAAG-ATCGGATCGGACC
129 TCATT-CCATGTCTAAGCCCCAG-TCGGACC
* * * *** * * *
16019465 GAGGGTTGTAGCAACAAGATCAAAATCACGCAG-GGTGGATC-GAGCCAGA-CCCCGGCTTGCGC
1 GAGGGTTGTGGCAGCAGGA-CCGCAGCACGCAGAGG-GGACCAG-GCC-GATCCCCAGCTTGCGC
* * * *** * * * *
16019527 ATTCTGCCTCTCCG-GTCGGTTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATAGGG
62 ATTATGCCTCT-CGAGCCAGCCCAGCGCCCGCACGCACATTTCGTGGGTTGACTTAGGCATACGG
*
16019591 AGTTAATTCCATGTCTAAGC
126 AGTTCATTCCATGTCTAAGC
16019611 ATATGGAGTT
Statistics
Matches: 244, Mismatches: 49, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 26 0.11
158 210 0.86
159 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GAGGGTTGTGGCAGCAGGACCGCAGCACGCAGAGGGGACCAGGCCGATCCCCAGCTTGCGCATTA
TGCCTCTCGAGCCAGCCCAGCGCCCGCACGCACATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGTCGGACC
Found at i:16019619 original size:26 final size:26
Alignment explanation
Indices: 16019583--16019635 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16019573 GTTGGCTTAG
16019583 GCATAGGGAGTTAATTCC-ATGTCTAA
1 GCATAGGGAGTTAATTCCTA-GTCTAA
* *
16019609 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTAATTCCTAGTCTAA
16019635 G
1 G
16019636 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTAATTCCTAGTCTAA
Found at i:16019994 original size:171 final size:171
Alignment explanation
Indices: 16019694--16020003 Score: 392
Period size: 171 Copynumber: 1.8 Consensus size: 171
16019684 CTGCATGCGA
* * * * * *
16019694 GGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCAT
1 GGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGCTCGGCTCAGTGCCCGCACGCAT
* ** * * * * *
16019759 GTTTCGTGGGTTGGCTTAGGCATAGGGTGTTCATTCCACGTCTAAGCCCCAACCGGATTGAGGGT
66 GTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCAACCGGACTGAGGGT
16019824 TGCGGTAGCGGGACCGACGGCGGGACCGGTAGCATGCAGTG
131 TGCGGTAGCGGGACCGACGGCGGGACCGGTAGCATGCAGTG
*
16019865 GGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACT-GGCTCAGTGCCCGCACGCT
1 GGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCG-CTCGGCTCAGTGCCCGCACG--
**** *
16019929 CAT-TTT-ATGGGTTGAATTAGGCATACGGAGTTCATTCCAAGTCTAAGATTGGACTGGACTGAG
63 CATGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCAACCGGACTGAG
16019992 GGTTGCGGTAGC
128 GGTTGCGGTAGC
16020004 AGGATCAACA
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
171 109 0.94
172 4 0.03
173 3 0.03
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.25
Consensus pattern (171 bp):
GGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGCTCGGCTCAGTGCCCGCACGCAT
GTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCAAGTCTAAGACCCAACCGGACTGAGGGT
TGCGGTAGCGGGACCGACGGCGGGACCGGTAGCATGCAGTG
Found at i:16020109 original size:524 final size:511
Alignment explanation
Indices: 16019183--16020197 Score: 1239
Period size: 524 Copynumber: 2.0 Consensus size: 511
16019173 AGCACGCAGG
* *
16019183 GGGGACCAGGCCGATCGCCTGCTTGCGCATTCTGCCTCTCTAGCCGGCTGAGTGCCCGCACGCAC
1 GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGCCGGCTGAGTGCCCGCACGCAC
* **
16019248 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
66 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAACCGGACCGAGGGT
* *
16019313 TGTGGTAGCGGGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCT
131 TGCGGTAGCGGGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTACGCATTATGCCT
* * * * *
16019378 CTCCGATCAGCCCAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGTCATACGGAGTTCATTCC
196 CTCCGATCAGCCCAGCGCCCGCACGCTCATTTTATGGGTTGAATTAGGCATACGGAGTTCATTCC
* * * * * *
16019443 CAGTCTAAGATCGGATCGGACCGAGGGTTGTAGCAACAAGATCAAAATCACGCAGGGTGGATCGA
261 AAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAACAAGATCAAAAGCACGAAGGGTCGACCGA
* ** ** * * * *
16019508 GCCAGACCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACACTCATTTCGTGG
326 GCCAGACCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAACACCCGCACACTCATTTCATGC
* * *
16019573 GTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGAT
391 GTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGAT
* *
16019638 C-GAACCAAATCGAGGGTTGCGGTAGCAGGACCAGCAGTAGCATCGACTGCATGCGA
456 CAG-ACCAAACCGAGGGTTACGGTAGCAGGACCAGCAGTAGCATCGACTGCATGCGA
* * * * * *
16019694 GGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCAT
1 GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGCCGGCTGAGTGCCCGCACGCAC
* * **
16019759 GTTTCGTGGGTTGGCTTAGGCATAGGGTGTTCATTCCACGTCTAAGCCCCAACCGGATTGAGGGT
66 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAACCGGACCGAGGGT
* * *
16019824 TGCGGTAGCGGGACCGACGGCGGGACCGGTAGCATGCAGTGGGGGATCGGGCTGATCCCCGGCTT
131 TGCGGTAGCGGGACCGACAGC---A-C----GCA-G-A---GGGGATCGGGCCGATCCCCAGCTT
* * *
16019889 ACGCATTATGCCTCTCCGA-CTGGCTCAGTGCCCGCACGCTCATTTTATGGGTTGAATTAGGCAT
183 ACGCATTATGCCTCTCCGATC-AGCCCAGCGCCCGCACGCTCATTTTATGGGTTGAATTAGGCAT
* * * * * * *
16019953 ACGGAGTTCATTCCAAGTCTAAGATTGGA-CTGGACTGAGGGTTGCGGTAGCAGGATCAACAGCA
247 ACGGAGTTCATTCCAAGTCTAAGATCGGATC-GGACCGAGGGTTGCAGCAACAAGATCAAAAGCA
* * * * *
16020017 CGTAAGGG-CGACCGGGTCGGTCCTCGGCTTGCGCATTCTACCTCTTCC-ACCGACTGAACACCC
311 CG-AAGGGTCGACCGAGCCAGACCCCGGCTTGCGCATTCTACCTC-TCCGACCGACTGAACACCC
* * *
16020080 GCACGCTCGTTTCATGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
374 GCACACTCATTTCATGCGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATACGAAGTT
** *
16020145 CATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGTTAGCAGGACCAGCA
439 CATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTACGGTAGCAGGACCAGCA
16020198 ATAACATTGA
Statistics
Matches: 420, Mismatches: 66, Indels: 23
0.83 0.13 0.05
Matches are distributed among these distances:
511 134 0.32
514 1 0.00
515 1 0.00
519 3 0.01
520 1 0.00
521 1 0.00
523 2 0.00
524 269 0.64
525 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (511 bp):
GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGCCGGCTGAGTGCCCGCACGCAC
ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAACCGGACCGAGGGT
TGCGGTAGCGGGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCCAGCTTACGCATTATGCCT
CTCCGATCAGCCCAGCGCCCGCACGCTCATTTTATGGGTTGAATTAGGCATACGGAGTTCATTCC
AAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAACAAGATCAAAAGCACGAAGGGTCGACCGA
GCCAGACCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAACACCCGCACACTCATTTCATGC
GTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGAT
CAGACCAAACCGAGGGTTACGGTAGCAGGACCAGCAGTAGCATCGACTGCATGCGA
Found at i:16020137 original size:26 final size:26
Alignment explanation
Indices: 16020107--16020159 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16020097 GTTGGCTTAG
*
16020107 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
16020133 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16020159 G
1 G
16020160 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16020459 original size:26 final size:26
Alignment explanation
Indices: 16020423--16020474 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16020413 TTGGCTTAGT
* **
16020423 CATATGGAGTTCATTCCTTGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16020449 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16020475 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16020698 original size:26 final size:26
Alignment explanation
Indices: 16020669--16020721 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16020659 CATGGCTTAG
16020669 GCATACAAAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
**
16020695 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
16020721 G
1 G
16020722 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:16021923 original size:26 final size:26
Alignment explanation
Indices: 16021894--16021946 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16021884 GTTGACTTAG
*
16021894 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16021920 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16021946 G
1 G
16021947 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16022281 original size:159 final size:158
Alignment explanation
Indices: 16021920--16022308 Score: 390
Period size: 159 Copynumber: 2.5 Consensus size: 158
16021910 CCCAGTGTAA
*
16021920 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * *
16021985 GCACGCAAAGAGGATCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGAC
66 GCACACAAAGAGGACCAGGCCGATCCCCGACTGGCGCATTATGCCTCTCCGACCAGCTCAGCGAC
*
16022050 CGCACATCCGTTTCGTGGGTTGGCTTAG
131 CGCACATCCGTTTCGTGGGTTGACTTAG
* * ** * * * *
16022078 GCATAGGGACTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGA
* * * * * *
16022141 TAGCACACAGAAGGGGACCGGGTCGATCCCCGGCTGGCGCATTATGCCTCTCCGCCCAGCTCAGC
64 CAGCACACA-AAGAGGACCAGGCCGATCCCCGACTGGCGCATTATGCCTCTCCGACCAGCTCAGC
* * * *
16022206 G-CACGTAC-GCTTGTTTTGTGGGTTGACTTAG
128 GAC-CGCACATC-CGTTTCGTGGGTTGACTTAG
* * * * ** *
16022237 GCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTACGACAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
16022302 GCACACA
66 GCACACA
16022309 GGGGGGATCG
Statistics
Matches: 181, Mismatches: 43, Indels: 13
0.76 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 59 0.33
159 116 0.64
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
GCACACAAAGAGGACCAGGCCGATCCCCGACTGGCGCATTATGCCTCTCCGACCAGCTCAGCGAC
CGCACATCCGTTTCGTGGGTTGACTTAG
Found at i:16023796 original size:26 final size:26
Alignment explanation
Indices: 16023744--16023796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16023734 GTTGGCTTAG
*
16023744 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
16023770 GCATAGGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
16023796 G
1 G
16023797 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:16024496 original size:26 final size:26
Alignment explanation
Indices: 16024467--16024519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16024457 GTTGACTTAG
*
16024467 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
16024493 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16024519 G
1 G
16024520 ATCGGAGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16025935 original size:159 final size:159
Alignment explanation
Indices: 16025722--16026130 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 159
16025712 TCGATCCTTC
* * * *
16025722 ACTTGCGCATTCTGCCTCTTCGATTGGCTGAGCGCCCGCATGC-CTGTTTTGTGGGTTGGCTTAG
1 ACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGTACGCTC-GTTTCGTGGGTTGGCTTAG
* * **
16025786 GCATAGGGAGTTCATTCCATGTCTAAGACCCA-G-CTGGACCAAGGGTTACGGCAGTGGGA-CTG
65 GCATACGGAGTTCATTCCATGTCTAAGA--CAGGACCGGACCAAGGGTTACGGCAGCAGGATC-G
* ** * *
16025848 GCAGCACGCAGAGGGGGA-CTGGGCTGATCCCCG
127 ACAGCACGCAGAGGGGGATC-GAACCGATCCCCA
* * * * * * *
16025881 ACTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTAATG
1 ACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGG
* ** * * **
16025946 CATATGGAGTTCATTCCCGGTCTAAGATAGGACCGGATCAAGGGTTGTGGCAGCAGGATCGACAG
66 CATACGGAGTTCATTCCATGTCTAAGACAGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAG
** *
16026011 CTTGCAGGGGGGGATCGAACCGATCCCCA
131 CACGCAGAGGGGGATCGAACCGATCCCCA
* * * * *
16026040 ACTTGCGCATTCTGCCTCTCCTG-TCGGCTGAGCGCCTGTACACTCATTTCGTGGGTTTGCTTAG
1 ACTTGCGCATTCTGCCTCTTC-GATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
16026104 GCATACGGAGTTCATTCCATGTCTAAG
65 GCATACGGAGTTCATTCCATGTCTAAG
16026131 CACACGGAGT
Statistics
Matches: 200, Mismatches: 44, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 1 0.00
159 194 0.97
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
ACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGACAGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAG
CACGCAGAGGGGGATCGAACCGATCCCCA
Found at i:16026862 original size:26 final size:26
Alignment explanation
Indices: 16026826--16026878 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16026816 GTTGACTTAG
16026826 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16026852 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16026878 G
1 G
16026879 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16027140 original size:158 final size:157
Alignment explanation
Indices: 16026852--16027838 Score: 776
Period size: 158 Copynumber: 6.2 Consensus size: 157
16026842 CCCAGTCTAA
* * *
16026852 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGCCGG-GCAG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCAGGATC-G
* * * * *
16026914 TCAGCATGCAGAGGAGGATCGGGCCGATCCCCGG-TTGCGCATTATGCCTCTTTGATCGGCTCAG
63 ACAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TTGACCGGCTGAG
* * * *
16026978 CGCCCGTACACTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
16027010 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
16027075 GCACGTAGGGGGGATTGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-TGACCGGCTGAGCGCC
* *
16027140 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGACTTAG
* * ** *
16027168 GCATATGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCCGCAGGA-CTG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC-G
* *** * **
16027230 ACAGCGGGATCGGCAGCATGCAGAAGGGGACCAAACTGATCCTTGGCTTGCGCATTATGCCTCTT
63 ACAGC---A----C-GCA-G--G--GGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT
* ** * * * * *
16027295 CGATCGATTCAGTGCTCGCACGCTCGTTTCGTGTGTTGACTTAG
115 -GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * ** *
16027339 GCATACGAAGTTCATTTCCAATCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
16027404 GCACGTAGGGGGGACCGGGTCGATCCCTGGCTTGCGTATTATGCCTCTTTGGCTGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TTGACCGGCTGAGCGCC
*
16027469 CGTACGCTCATTTCGTGGGTTGACTTAG
130 CGCACGCTCATTTCGTGGGTTGACTTAG
* * *
16027497 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAACAAGATC-AG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGA-
* * ** * * * *
16027560 TAGCACACAGGGGGGA-CTGGGTTGATCCCCGGCTTGCGCATTCTACCCCTTCGACCTGCTGAGC
64 CAGCACGCAGGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTT-GACCGGCTGAGC
* * * *
16027624 ACCCGCACGCCCATTT-GATGGCTTCACTTAG
127 GCCCGCACGCTCATTTCG-TGGGTTGACTTAG
* * * *
16027655 GCATACTG-AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTTGCAGCAGGATTGAC
1 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * ** * *
16027719 AACACGTA-GGGGGATCGGGCCGGTCCCCAGCTTGCACATTATGCCTCTCTGGTCGGTTGAGTGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-TGACCGGCTGAGCGC
* * * * *
16027783 CCGTATGGTCATTTCATGGATTGACTTAG
129 CCGCACGCTCATTTCGTGGGTTGACTTAG
* *
16027812 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGAAGTTCATTCCCAGTCTAAG
16027839 CATATGGAGT
Statistics
Matches: 657, Mismatches: 134, Indels: 77
0.76 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 113 0.17
158 403 0.61
159 9 0.01
160 1 0.00
161 1 0.00
162 1 0.00
163 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 1 0.00
168 1 0.00
169 1 0.00
170 3 0.00
171 112 0.17
172 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTGACCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:16027368 original size:329 final size:329
Alignment explanation
Indices: 16026948--16027838 Score: 911
Period size: 329 Copynumber: 2.8 Consensus size: 329
16026938 CGATCCCCGG
* * * *
16026948 TTGCGCATTATGCCTCTTTGATCGGCTCAGCGCCCGTACACTCGTTTCGTGGGTTGACTTATGCA
1 TTGCGCATTATGCCTCTTCGATCGACTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCA
* * *
16027013 TACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCA
66 TACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
** * *
16027078 CGTAGGGGGGATTGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGC
131 CGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGC
* * ** * *
16027143 ACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGA
196 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGA
16027206 CCGAGGGTTGTGGCCGCAGGACTGACAGCGGGATCGGCAGCATGCAGAAGGGGACCAAACTGATC
259 CCGAGGGTTGTGGCCGCAGGACTGACAGCGGGATCGGCAGCATGCAGAAGGGGACCAAACTGATC
16027271 CTTGGC
324 CTTGGC
* * * * *
16027277 TTGCGCATTATGCCTCTTCGATCGATTCAGTGCTCGCACGCTCGTTTCGTGTGTTGACTTAGGCA
1 TTGCGCATTATGCCTCTTCGATCGACTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCA
* * **
16027342 TACGAAGTTCATTTCCAATCTAAGATCGGATCGGATTGAGGGTTGCGGCAGCAGGATCGACAGCA
66 TACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * * *
16027407 CGTAGGGGGGACCGGGTCGATCCCTGGCTTGCGTATTATGCCTCTTTGGCTGGCTGAGCGCCCGT
131 CGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGC
*
16027472 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
196 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACC
* * ** * ***** *
16027537 GAGGGTTGT-G--GCA--AC--A-A----GATCAGTAGCACACAG-GGGGGACTGGGTTGATCCC
261 GAGGGTTGTGGCCGCAGGACTGACAGCGGGATCGGCAGCATGCAGAAGGGGACCAAACTGATCCT
*
16027589 CGGC
326 TGGC
* * * * * * * * * * *
16027593 TTGCGCATTCTACCCCTTCGACCTG-CTGAGCACCCGCACGCCCATTT-GATGGCTTCACTTAGG
1 TTGCGCATTATGCCTCTTCGATC-GACTCAGCGCCCGCACACTCGTTTCG-TGGGTTGACTTAGG
* * * ** *
16027656 CATACTG-AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTTGCAGCAGGATTGACA
64 CATAC-GAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * * * *
16027720 ACACGTA-GGGGGATCGGGCCGGTCCCCAGCTTGCACATTATGCCTCTCTGGTCGGTTGAGTGCC
128 GCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCC
* * * * * * *
16027784 CGTATGGTCATTTCATGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
193 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
16027839 CATATGGAGT
Statistics
Matches: 470, Mismatches: 87, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
315 95 0.20
316 118 0.25
317 14 0.03
321 1 0.00
322 1 0.00
324 2 0.00
326 3 0.01
328 4 0.01
329 229 0.49
330 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (329 bp):
TTGCGCATTATGCCTCTTCGATCGACTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCA
TACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
CGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACC
GAGGGTTGTGGCCGCAGGACTGACAGCGGGATCGGCAGCATGCAGAAGGGGACCAAACTGATCCT
TGGC
Found at i:16028497 original size:26 final size:26
Alignment explanation
Indices: 16028461--16028513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16028451 GTTGACTTAG
16028461 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16028487 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16028513 G
1 G
16028514 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16028975 original size:158 final size:157
Alignment explanation
Indices: 16028487--16029659 Score: 627
Period size: 158 Copynumber: 7.2 Consensus size: 157
16028477 CCCAGTCTAA
* * *
16028487 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGGT
1 GCATA-GGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCGAT
* * * ** * *
16028551 AGCACGTAGGGGGGATC-GAGTCGATCCCCGGCTTATGCATTCTACCTCTCCGACCGGCTGAGTG
64 AGCACGCAGGGGGGACCGGA-CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
16028615 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * *
16028645 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTAGCAGTGGGATCGAT
1 GCATA-GGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCAGCAGTAGGATCGAT
* * * * * *
16028709 AGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAACG
64 AGCACGCAG-GGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * *
16028774 CCCGTAGGATCGTTTCATGGATTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
16028804 GCATATGATGTTCATTCC-TAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGATCTAC
1 GCATAGGA-GTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCGAT
* * * * * * *
16028868 AGCAAGCAGTGGGGACCGGACCGGTCCCCGGCTTGCGTATTCTGCCTCTCCGGCCAGCTGAGCAC
64 AGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
16028933 CCGCACGCTCGTTTCGTGGGTTGGCTTAA
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * *
16028962 ACATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGAACTGGAT
1 GCATA-GGAGTTCATTCCATGTCTAAG-AT-C-G-G---A---CC-G-----GACCG-A-GGGTT
* ** ** * * *
16029027 -CGAGGATTGCGATAGTAGGATCGGCAGCACGCAGAAGGGACCGGGCCGATCCCCGACTTGCGTA
47 GC-AGCA----G-TA---GGATCGATAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCA
* * ** * * * *
16029091 TTCTGGCTCTTCGGTCGACTGAGCGCCTGTACG-TCCATTTCATGGGTTGGCTTAG
103 TTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* ** ** * * ** * * * *
16029146 GCATAGGTTGTTCATTCCATGTCTATA-CCCCAACCAGACTGAGGGTTGTGGCAGCAAGACCGAC
1 GCATAGG-AGTTCATTCCATGTCTA-AGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCGAT
* * * * * * * * ** * *
16029210 AGCACGTAGACGGGGATCGGGCTGATCCCCGGCTTGCGTATTATGCCTCTCTGGTCGGCTTAGTG
64 AGCACGCAG-GGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* ** *
16029275 CCCGCACGCTCATTTTGTGGGTTGACTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
16029305 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGACCGGATCGAGGGTTGCAACTGTAGGATCGAC
1 GCATA-GGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCGAT
** ** * * ** *
16029369 AGCACATAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCAC
64 AGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
16029434 CCGCACGCTTGTTTCGTTGGTTGGCTGAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
16029463 GCATGCGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACTGGAGGTTGCGGTAGTAGCACCAGT
1 GCAT-AGGAGTTCATT-CCATGTCTAAGATCGGACCGGAC-CGA----G-GGT--T-GCAGCAGT
* * ** * * * * * *
16029527 AGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTACGCATTTTTCCTCTCTGA
55 ---AGGATCGATAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * *
16029592 CCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTAAG
117 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
16029633 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATA-GGAGTTCATTCCATGTCTAAG
16029660 CCCCAGCTGA
Statistics
Matches: 778, Mismatches: 177, Indels: 108
0.73 0.17 0.10
Matches are distributed among these distances:
157 5 0.01
158 261 0.34
159 240 0.31
160 9 0.01
161 2 0.00
162 2 0.00
163 1 0.00
164 3 0.00
165 1 0.00
166 6 0.01
167 7 0.01
168 6 0.01
169 4 0.01
170 108 0.14
174 6 0.01
175 2 0.00
176 6 0.01
177 1 0.00
180 1 0.00
181 1 0.00
182 1 0.00
183 3 0.00
184 101 0.13
185 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATAGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCGATAG
CACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16028999 original size:26 final size:26
Alignment explanation
Indices: 16028963--16029014 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16028953 TTGGCTTAAA
*
16028963 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
16028989 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16029015 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:16029341 original size:501 final size:499
Alignment explanation
Indices: 16028389--16029489 Score: 1290
Period size: 501 Copynumber: 2.2 Consensus size: 499
16028379 CCACTCGTTT
* * * * *
16028389 GATCCCCAGCTTGCGCATCCTGCCTCTCTGGTAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCA-GCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * ** *
16028454 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
65 GGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA
* * * * ** * * *
16028519 ACCGGACCGAGGGTTGCGGTAGTAGGATCGGTAGCACGTAGGGGGGATCGAGTCGATCCCCGGCT
129 ACCGGACCGAGGATTGCGATAGTAGGATCGGCAGCACGCAGAAGGGACCGAGCCGATCCCCGACT
* * * *
16028584 TATGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
194 TACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
* * *** * *
16028649 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTAGCAGTGGGATCGATAGCAC
259 AGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTAGCAGCAAGACCGACAGCAC
* * *
16028714 GCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCGT
324 GCAGACGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCGC
* * * * * *
16028779 AGGATCGTTTCATGGATTGGCTTAGGCATATGATGTTCATTCCTAGTCTAAGATCGGACCGGA-C
389 ACGATCATTTCATGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATC
* * *
16028843 TGAGGGTTGCAGCAGCAGGATCTACAGCA-AGCAGTGGGGACCGGACC
454 -GAGGGTTGCAACAGCAGGATCGACAGCACA-CAGGGGGGACCGGACC
* *
16028890 GGTCCCCGGCTTGCGTATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
** *
16028955 GGCTTAAACATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGA
65 GGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA
* * *
16029020 ACTGGATCGAGGATTGCGATAGTAGGATCGGCAGCACGCAGAAGGGACCGGGCCGATCCCCGACT
129 ACCGGACCGAGGATTGCGATAGTAGGATCGGCAGCACGCAGAAGGGACCGAGCCGATCCCCGACT
* * ** * ** * * *
16029085 TGCGTATTCTGGCTCTTCGGTCGACTGAGCGCCTGTACGTCCATTTCATGGGTTGGCTTAGGCAT
194 TACGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
** * *
16029150 AGGTTGTTCATTCCATGTCTATA-CCCCAACCAGACTGAGGGTTGTGGCAGCAAGACCGACAGCA
259 AGGGAGTTCATTCCATGTCTA-AGCCCCAACCAGACCGAGGGTTGTAGCAGCAAGACCGACAGCA
* * * * * * * **
16029214 CGTAGACGGGGATCGGGCTGATCCCCGGCTTGCGTATTATGCCTCTCTGGTCGGCTTAGTGCCCG
323 CGCAGACGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCG
* ** * *
16029279 CACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGAT
388 CACGATCATTTCATGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGAT
* * * **
16029344 CGAGGGTTGCAACTGTAGGATCGACAGCACATAGGGGGGACCGGGTC
453 CGAGGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCGGACC
* * * * *
16029391 GATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTTGTTTCGTTGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* *
16029456 GGCTGAGGCATGCGGAGTTCATTCCCAGTCTAAG
65 GGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
16029490 ATTGGATCGG
Statistics
Matches: 499, Mismatches: 95, Indels: 12
0.82 0.16 0.02
Matches are distributed among these distances:
500 3 0.01
501 489 0.98
502 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (499 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAAC
CGGACCGAGGATTGCGATAGTAGGATCGGCAGCACGCAGAAGGGACCGAGCCGATCCCCGACTTA
CGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTAGCAGCAAGACCGACAGCACGC
AGACGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCGCAC
GATCATTTCATGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
GGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCGGACC
Found at i:16029688 original size:170 final size:170
Alignment explanation
Indices: 16029360--16029736 Score: 400
Period size: 170 Copynumber: 2.2 Consensus size: 170
16029350 TTGCAACTGT
** * * **
16029360 AGGATCGACAGCACATAGGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCG
1 AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCG
* * * * * *
16029425 GCTGAGCACCCGCACGCTTGTTTCGTTGGTTGGCTGAGGCATGCGGAGTTCATTCCCAGTCTAAG
66 GCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAG
*** * * *
16029490 ATTGGATCGGACTGGAGGTTGCGGTAGTAGCACCAGTAGC
131 ACCAGATCGAACCGGAGGTTGCGGTAGTAGCACCAGCAGC
* * *
16029530 AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTACGCATTTTTCCTCTCTGACCG
1 AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCG
* *
16029595 GTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATT-CCATGTCTAA
66 GCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCCA-GTCTAA
* * * * *
16029659 GCCCCAGCT-GAACC-GAGGGTTGTGGTAGTAGGACCGGCAGC
130 G-ACCAGATCGAACCGGA-GGTTGCGGTAGTAGCACCAGCAGC
* ** * *
16029700 GGGATCGGTAGCATGCAGAGGGGGATCGGGTTGATCC
1 AGGATCGACAGCACGCAG-GGGGGATCGGGTCGATCC
16029737 CGGGCTTGTG
Statistics
Matches: 170, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
169 5 0.03
170 146 0.86
171 19 0.11
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23
Consensus pattern (170 bp):
AGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCG
GCTGAGCACCCGCACACTCGTTTCATGGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAG
ACCAGATCGAACCGGAGGTTGCGGTAGTAGCACCAGCAGC
Found at i:16029834 original size:26 final size:26
Alignment explanation
Indices: 16029804--16029856 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16029794 GTTGACTTAG
16029804 GCATACAAAGTTAATCCCCAGTCTAA
1 GCATACAAAGTTAATCCCCAGTCTAA
** * *
16029830 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTAATCCCCAGTCTAA
16029856 G
1 G
16029857 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTAATCCCCAGTCTAA
Found at i:16030025 original size:26 final size:25
Alignment explanation
Indices: 16029989--16030038 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
16029979 TGGCTTAGGT
16029989 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCA-GTCTAAGC
16030015 ATACGGAGTTCATTCCAGTCTAAG
1 ATACGGAGTTCATTCCAGTCTAAG
16030039 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (25 bp):
ATACGGAGTTCATTCCAGTCTAAGC
Found at i:16031291 original size:185 final size:184
Alignment explanation
Indices: 16030921--16031264 Score: 395
Period size: 185 Copynumber: 1.9 Consensus size: 184
16030911 GTTGACTTAT
* *
16030921 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCTAGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCAACA
* * * * ** * * *
16030986 GCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGTGCC
66 GCACGCAGGGGGGATCGGCTCGATCCCCGGCTTGCGCATCCTGCCTCTCCGACCGGCTAAGCGCC
* *
16031051 CGCACGCTCGTTTCGTCGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAA
131 CGCACCCCCGTTTCGTCGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAA
* * * * ****
16031105 GCATACGGAGTTCATTCCTAGTCTAAAATCGGACCGGACCGAGGGTTGTGACAGTAGGATTGGTA
1 GCATACGGAGTTCATTCCTAGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCAACA
* * *
16031170 GCAATGCAGGGGGGA-CGAAGCT-GATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGC
66 GC-ACGCAGGGGGGATCG--GCTCGATCCCCGGCTTGCGCATCCTGCCTCTCCGACCGGCTAAGC
* * * *
16031233 GCCCGTACCCCCGTTTTGTGGGTTGGCTTAGG
128 GCCCGCACCCCCGTTTCGTCGGTTGACTTAGG
16031265 TATAGGGAGT
Statistics
Matches: 129, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
184 59 0.46
185 68 0.53
186 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCAACA
GCACGCAGGGGGGATCGGCTCGATCCCCGGCTTGCGCATCCTGCCTCTCCGACCGGCTAAGCGCC
CGCACCCCCGTTTCGTCGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAA
Found at i:16031503 original size:159 final size:159
Alignment explanation
Indices: 16031192--16031610 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 159
16031182 GGACGAAGCT
* * * * *
16031192 GATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGTACCCCCGTTTTGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTACGACCGGCTAAGCGCCCGCACACCCGTTTCGTGGGTT
* * * **
16031257 GGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTTGCAGCAGG
66 GGCTTACGTATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACTGAGGGTTGCGGCAGCAGG
* * * * *
16031322 ACCGGCAGCACGTAGAGAGGGACCCGG-TC
131 ACAGACAACACGCAGAGAGGGA-CCGGCCC
* * * * * *
16031351 GATCCCTGGCTTGCGCATTATGCCTCTACGACTGGTTCAGCGCCTGCACACCCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTACGACCGGCTAAGCGCCCGCACACCCGTTTCGTGGGTT
* *
16031416 GAG-TTACGTATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACTGAGGGTTGCGGCAGC
66 G-GCTTACGTATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACTGAGGGTTGCGGCAGC
* *
16031478 AGGATAGACAACACGCA-AGTGGGGACCGGCCC
128 AGGACAGACAACACGCAGAG-AGGGACCGGCCC
* * * ** * * * * ** *
16031510 GGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCTCACACTCGTTTTATTGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTACGACCGGCTAAGCGCCCGCACACCCGTTTCGTGGGTT
* * *
16031575 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
66 GGCTTACGTATACGGAGTTCATTCCATGTCTAAGCA
16031611 TTCAGAGTTC
Statistics
Matches: 207, Mismatches: 45, Indels: 15
0.78 0.17 0.06
Matches are distributed among these distances:
158 13 0.06
159 189 0.91
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTACGACCGGCTAAGCGCCCGCACACCCGTTTCGTGGGTT
GGCTTACGTATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACTGAGGGTTGCGGCAGCAGG
ACAGACAACACGCAGAGAGGGACCGGCCC
Found at i:16031980 original size:26 final size:26
Alignment explanation
Indices: 16031950--16032002 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16031940 GTTGACCTAG
16031950 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16031976 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16032002 G
1 G
16032003 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16032456 original size:158 final size:158
Alignment explanation
Indices: 16031976--16032477 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
16031966 CCCAGTCTAA
** * * ***
16031976 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGTTTGTGGCAGTAGGATCCGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAACA
* * * * *
16032041 GCACGCAGGAGGGACCGGGCCAATCCTCGGCTTGCGCATTCTACCTCTC-CGACC-AGCTGAGCG
66 GCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCTAG-CCGA-CTGAGCG
* *
16032104 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
16032134 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACCAAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAA
* ** * * * *
16032197 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGATTTTTGCATTATGCCTCT-TCAGTCGGCTCAG
64 CAGCACGCAG-GGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCT-AGCCGACTGAG
* * *
16032261 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** **
16032293 GCATACGGAGTTCATTCCCAACCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAACA
* * * * *
16032358 GCACGTAGGGGGGACCCGGCCGATCCCCGACTTGCACATTCTGCCTCTCTAGCCGACTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCTAGCCGACTGAGCGCC
* * *
16032423 CACACGTTCGTTTTGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
16032451 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16032478 CATATGGAGT
Statistics
Matches: 271, Mismatches: 63, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 143 0.53
159 118 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAACA
GCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCTAGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16032487 original size:26 final size:26
Alignment explanation
Indices: 16032451--16032503 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16032441 GTTGGCTTAG
16032451 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16032477 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16032503 G
1 G
16032504 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16033502 original size:159 final size:160
Alignment explanation
Indices: 16033201--16034203 Score: 649
Period size: 159 Copynumber: 6.2 Consensus size: 160
16033191 CCCAATCTAA
* * ** * * *
16033201 GCATGCGGAGTTCATTCCCA-GTCTAAGA-T-CAGACCAGACCGAGGGTTGCAGCAACAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAA-ACTCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCG
* * * * *
16033263 GTAGCATGCAG-GGGGGATCGGACCGATCCTCGGCTTGCGCATTTTGCCTCTCCGGTCCG-CTGA
63 GCAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCCGACTGA
* *
16033326 GCACCCGCACGCCCGTTTTGTGGGTTGGCTTAG
128 GCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
*
16033359 GCATAGGGAGTTCATTCCATGTCTAAACTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAACTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCA
* * * * * *
16033424 GCACGTAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCAG-CTCAGCA
66 GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCCGACTGAGCG
* * * *
16033488 CCCGTACGCTCGTTTTATTGGTTGACTTAG
131 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* ** * ** * * **
16033518 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGA-CCGGATCGAGGGTTACGGCAGCAGGATCAA
1 GCATACGGAGTTCATT-CCATGTCTAA-ACTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGG
* * * * * * ** * *
16033581 CAGGACGCAGGGGGGGACCGAGACGGTCCCCAACTTGCGCATTCTGCCTCTCCGG-CCGACTAAG
64 CAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCCGACTGAG
16033645 CGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * *** * ** *
16033677 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC
1 GCATACGGAGTTCATTCCATGTCTAAAC-T-C-CAG-CCGGACCGAGGGT-TG-T-GG--C--A-
* * * *
16033742 TGAGGGTTGCGGCAGCAAGATCAACCGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCAT
54 -GCGGG--AC--CGGC-AG--C-A-CGCA-G-A-GGGGGATCGGGCCGATCCCCGGCTTGCGCAT
* * * * *
16033807 TCTGCCTCTTCGG-CCGACTGAGCGCCCGCACGCCCGTTTCGTGGATTGGCTTAG
106 TATGCCTCTCCGGTCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * * * * * *
16033861 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGTGGGACAGGCA
1 GCATACGGAGTTCATTCCATGTCTAAACTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCA
* * ** * * * *
16033926 GCACACAGAGGGGGATCGGGCCGATCCTCAACTTGCGCATTATGCCTCTTC-GACCGGCTCTA-C
66 GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCCGACT-GAGC
* * * *
16033989 GCCCACACGCTCATTTCT-TGGGTTGACTTAT
130 GCCCGCACGCTCGTTT-TGTGGGTTGGCTTAG
** * ** * ** *
16034020 GCATACGGAGTTCATTCCCA-GTCTAAGA-T-CAGACTAGACTGAGGGTTACGACAGCATGATCG
1 GCATACGGAGTTCATT-CCATGTCTAA-ACTCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCG
** * * *
16034082 ATAGCACGCAG-GGGGGA-CTGGGCCAATCCCTGGCTTGCGCATTTTGCCTCTCCGGT-CGACTG
63 GCAGCACGCAGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCCGACTG
* *
16034144 AGCGCCCGCACGCTCGTTTCGTGGTTTGGCTTAG
127 AGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
*
16034178 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16034204 GCATACGGAG
Statistics
Matches: 651, Mismatches: 149, Indels: 90
0.73 0.17 0.10
Matches are distributed among these distances:
157 9 0.01
158 144 0.22
159 331 0.51
160 11 0.02
161 3 0.00
162 3 0.00
163 6 0.01
164 1 0.00
166 4 0.01
167 2 0.00
168 1 0.00
169 1 0.00
170 1 0.00
171 4 0.01
172 3 0.00
173 1 0.00
175 1 0.00
176 3 0.00
177 4 0.01
178 1 0.00
179 1 0.00
180 8 0.01
181 6 0.01
182 2 0.00
184 100 0.15
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAACTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCA
GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCCGACTGAGCG
CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:16033713 original size:26 final size:26
Alignment explanation
Indices: 16033677--16033729 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16033667 GTTGGCTTAG
16033677 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16033703 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16033729 G
1 G
16033730 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16033873 original size:184 final size:185
Alignment explanation
Indices: 16033518--16033888 Score: 548
Period size: 184 Copynumber: 2.0 Consensus size: 185
16033508 GTTGACTTAG
* * *
16033518 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGCAGCAAGATCAACA
* *
16033583 GGACGCAGGGGGGGACCGAGACGGTCCCCAACTTGCGCATTCTGCCTCTCCGGCCGACTAAGCGC
66 GCACGCAGGGGGGGACCGAGACGATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGACTAAGCGC
* * *
16033648 CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACGCCCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
16033703 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA-CTGAGGGTTGCGGCAGCAAGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATC-GAGGGTTACGGCAGCAAGATCAAC
* * * * *** * *
16033767 CGCACGCA-GGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCG
65 AGCACGCAGGGGGGGACCGAGACGATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGACTAAGCG
*
16033831 CCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16033887 GC
1 GC
16033889 CCCAGTCGAA
Statistics
Matches: 166, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
184 102 0.61
185 64 0.39
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGCAGCAAGATCAACA
GCACGCAGGGGGGGACCGAGACGATCCCCAACTTGCGCATTCTGCCTCTCCGGCCGACTAAGCGC
CCGCACGCCCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:16034066 original size:502 final size:501
Alignment explanation
Indices: 16033123--16034231 Score: 1460
Period size: 502 Copynumber: 2.2 Consensus size: 501
16033113 TTACGCATCA
* * * * * * *
16033123 TGCCTCTCTGGTCGGCTGAGCGTCCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTC
1 TGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * *
16033188 ATCCCCA-ATCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG
66 AT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG
* *** * *
16033252 CAACAGGATCGGTAGCATGCAGGGGGGATCGGACCGATCCTCGGCTTGCGCATTTTGCCTCTCCG
130 CAACAAGATCAACAGCACGCAGGGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
* *
16033317 GTCCGCTGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
195 GTCCGCTGAGCACCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTC
* * * **
16033382 TAAACTCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATCGAGCCG
260 TAAACCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACAGGCAGCACACAGAGGGGGATCGAGCCG
** ** ** * *
16033447 ATCCCCGGCTTGCGCATTATGCCTCTTCGGTCAGCTCAGCACCCGTACGCTCGTTTTATTGGTTG
325 ATCCCCAACTTGCGCATTATGCCTCTTCGACCAGCTCAGCACCCACACGCTCATTTTATGGGTTG
** * *
16033512 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGCAGCAGGA
390 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGA
* **
16033577 TCAACAGGACGCAGGGGGGGACCGAGACGGTCCCCAACTTGCGCATTC
455 TCAACAGCACGCA-GGGGGGACCGAGACAATCCCCAACTTGCGCATTC
* * *
16033625 TGCCTCTCCGGCCGACTAAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTC
1 TGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * *
16033690 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTGCGG
66 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAG
* * * *
16033754 CAGCAAGATCAACCGCACGCAGGGGGGATCGGGCCGATCC-CTGGCTTGCGCATTCTGCCTCTTC
130 CAACAAGATCAACAGCACGCAGGGGGGATCGGACCGATCCTC-GGCTTGCGCATTCTGCCTCTCC
*
16033818 GG-CCGACTGAGCGCCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATG
194 GGTCCG-CTGAGCACCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * *
16033882 TCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGTGGGACAGGCAGCACACAGAGGGGGATCGGGC
258 TCTAAACCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACAGGCAGCACACAGAGGGGGATCGAGC
* * *
16033947 CGATCCTCAACTTGCGCATTATGCCTCTTCGACCGGCTCTA-CGCCCACACGCTCATTTCT-TGG
323 CGATCCCCAACTTGCGCATTATGCCTCTTCGACCAGCTC-AGCACCCACACGCTCATTT-TATGG
* *
16034010 GTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-CTGAGGGTTACGACAG
386 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTACGACAG
* * * * * * *** *
16034074 CATGATCGATAGCACGCAGGGGGGACTGGGCCAATCCCTGGCTTGCGCATTT
450 CAGGATCAACAGCACGCAGGGGGGACCGAGACAATCCCCAACTTGCGCATTC
* *
16034126 TGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTC
1 TGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
16034191 ATTCCATGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGAT
66 ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
16034232 TTTGAGCCAC
Statistics
Matches: 527, Mismatches: 73, Indels: 16
0.86 0.12 0.03
Matches are distributed among these distances:
500 12 0.02
501 123 0.23
502 390 0.74
503 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (501 bp):
TGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGC
AACAAGATCAACAGCACGCAGGGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGG
TCCGCTGAGCACCCGCACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAACCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACAGGCAGCACACAGAGGGGGATCGAGCCGA
TCCCCAACTTGCGCATTATGCCTCTTCGACCAGCTCAGCACCCACACGCTCATTTTATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGGAT
CAACAGCACGCAGGGGGGACCGAGACAATCCCCAACTTGCGCATTC
Found at i:16034215 original size:26 final size:25
Alignment explanation
Indices: 16034178--16034229 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16034168 TTTGGCTTAG
16034178 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
*
16034204 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
16034229 G
1 G
16034230 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:16034952 original size:26 final size:26
Alignment explanation
Indices: 16034900--16034952 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16034890 GTTGACTTAG
**
16034900 GCATACAGAGTTCATCCCTAGTTTAA
1 GCATACAGAGTTCATCCCTAGCCTAA
*
16034926 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACAGAGTTCA-TCCCTAGCCTAA
16034952 G
1 G
16034953 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGCCTAA
Found at i:16035453 original size:171 final size:171
Alignment explanation
Indices: 16035009--16035454 Score: 436
Period size: 171 Copynumber: 2.6 Consensus size: 171
16034999 GAAGGATCGA
* * * * * * * * *
16035009 GTCGATCCCCGGCTTGCGCATTTTACCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
1 GTCGATCTCCGACTTACGCATTATGCCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCGTGG
* * * * * *
16035074 GTTGTCTTAGGCATAGGGAGGTCATTCCCAGTCTAAG-ATCGGACCAGATCGAGGGTTGTGGCAG
66 GTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAG
* * *
16035138 CAGGACCAGCAGCAGGATCGGTAGCACGCAGAGGGTGACCGG
130 CAGGACCAGCAACAGGATCGGTAGCACGCAAAGGGGGACCGG
** * ** * **
16035180 GTCGATCTCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCATGCTCATTTTATGG
1 GTCGATCTCCGACTTACGCATTATGCCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCGTGG
* * *
16035245 CTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAG
66 GTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAG
* * * *
16035309 CATGACCAGCAACGGGATCGGCTA-CATGCAAAGGGGGACTGG
130 CAGGACCAGCAACAGGATCGG-TAGCACGCAAAGGGGGACCGG
* * * *
16035351 G-CTGATC-CTTGACTTACGCATTATGCCTCTCTG-GCTGGGTGAACGCCCGCACGCTCATTTCG
1 GTC-GATCTC-CGACTTACGCATTATGCCTCTCCGATC-GGCTGAACGCCCGCACGCTCATTTCG
* *
16035413 TGGGTTGACTTAGGCATACGGAGTTCAGTTGCAATCTAAGCA
63 TGGGTTGACTTAGGCATACGGAGTTCA-TTCCAGTCTAAGCA
16035455 TACGAGTTCA
Statistics
Matches: 224, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
170 6 0.03
171 210 0.94
172 8 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (171 bp):
GTCGATCTCCGACTTACGCATTATGCCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGC
AGGACCAGCAACAGGATCGGTAGCACGCAAAGGGGGACCGG
Found at i:16035738 original size:119 final size:119
Alignment explanation
Indices: 16035515--16035754 Score: 279
Period size: 119 Copynumber: 2.0 Consensus size: 119
16035505 CAGGATCGAT
* * * * * *
16035515 AGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCTCATTCTGCCTCTCCGACCGGTTGAGCGC
1 AGCACACAGGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGACCGGCTCAGAGC
* * * *
16035580 CCGCACACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATA-TCTA
66 CCGCACACCTGTTTCATCGGTTGACTTAGACATACGGAGTTCATTCCA-AGTCTA
* *
16035634 AGCACACAGAGGGGGACCGGGCCGATCC-CGGCTTGCACATTATGCCTCTTCGGCCGGCTCAGAG
1 AGCACACAG-GGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGACCGGCTCAGAG
* * * * *
16035698 TCCGCAC-GCTCGTTTCGTCGGTTGACTTATATATACGGAGTTCATTCCAAGTCTA
65 CCCGCACACCT-GTTTCATCGGTTGACTTAGACATACGGAGTTCATTCCAAGTCTA
16035753 AG
1 AG
16035755 ATCAGACCGC
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
118 3 0.03
119 80 0.79
120 18 0.18
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.24
Consensus pattern (119 bp):
AGCACACAGGGGGGACCGGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGACCGGCTCAGAGC
CCGCACACCTGTTTCATCGGTTGACTTAGACATACGGAGTTCATTCCAAGTCTA
Found at i:16035937 original size:26 final size:26
Alignment explanation
Indices: 16035887--16035939 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16035877 GTTGGCCTAG
*
16035887 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16035913 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16035939 G
1 G
16035940 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16036606 original size:26 final size:26
Alignment explanation
Indices: 16036570--16036622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16036560 GTTGACTTCG
*
16036570 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16036596 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16036622 G
1 G
16036623 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16043208 original size:26 final size:26
Alignment explanation
Indices: 16043178--16043230 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043168 GTTGACTTAG
* *
16043178 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
*
16043204 GCATACGAAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
16043230 G
1 G
16043231 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTCCATCCCCAGTCTAA
Found at i:16043513 original size:159 final size:158
Alignment explanation
Indices: 16043350--16043727 Score: 350
Period size: 158 Copynumber: 2.4 Consensus size: 158
16043340 GCCCGTTCCG
* **
16043350 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACGGC
* * * *
16043415 AACGGAACCGACAGAATGTAGAGGGGGACCAGGCCAATCC-CTGGCTTGCGCATTATGCCTCTTC
66 AACAGAACCGACAGAACGCA-AGGGGGACCAGGCCAATCCTC-GGCTTGCGCATTATGCCTCTCC
* * **
16043479 GGTCGACTCAATC-CCCGTACGCTCATTTCA
129 GATCGACT-AAGCACCCACACGCTCATTTCA
* * * * ** * * **
16043509 TGGGTTGACTTATGCATACGAAGTTCAGTCCCA-GTCTAAG-ATCGGATCGGATTGAGGGTTACG
1 TGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTACG
* * * * * ** ** *
16043572 GCAGCAGAATCGACAGCACGCACGGTGGACTGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCC
64 GCAACAGAACCGACAGAACGCAAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCTCTCC
* * * *
16043637 GATCGGCTGAGCACCCACACGCTCGTTTCG
129 GATCGACTAAGCACCCACACGCTCATTTCA
* *
16043667 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCAAACCGAGGGTTA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTA
16043728 TGGTAGCAAG
Statistics
Matches: 166, Mismatches: 47, Indels: 13
0.73 0.21 0.06
Matches are distributed among these distances:
157 6 0.04
158 96 0.58
159 60 0.36
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACGGC
AACAGAACCGACAGAACGCAAGGGGGACCAGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGA
TCGACTAAGCACCCACACGCTCATTTCA
Found at i:16043684 original size:158 final size:157
Alignment explanation
Indices: 16043204--16043706 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 157
16043194 CCCAGTCTAA
* * * * * *
16043204 GCATACGAAGTCCATTCCCA-GTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGAAGTTCA-TCCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGAATCGAC
* * * * *
16043268 AGCACTCAGGGGGAACCGGAGCTGATCCTCGGTTTGCGCATTCTACCTCTCCCATCGGTTGAGCA
65 AGCACGCAGGGGG-ACCGG-GCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* * *
16043333 TCCGCACGCCCGTTCCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *
16043363 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAACGGAACCGAC
1 GCATACGAAGTTCATCCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGAATCGAC
* * * * ** * * * * * *
16043427 AGAATGTAGAGGGGGACCAGGCCAATCC-CTGGCTTGCGCATTATGCCTCTTCGGTCGACTCAAT
65 AGCACG--CAGGGGGACCGGGCTGATCCTC-GGCTTGCGCATTCTGCCTCTCCGATCGGCT-GAG
* * * * *
16043491 C-CCCGTACGCTCATTTCATGGGTTGACTTAT
126 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
16043522 GCATACGAAGTTCAGTCCCA-GTCTAAGATCGGATCGGATTGAGGGTTACGGCAGCAGAATCGAC
1 GCATACGAAGTTCA-TCCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGAATCGAC
* *
16043586 AGCACGCACGGTGGACTGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
65 AGCACGCA-GGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
*
16043651 CCACACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
16043680 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATCCCATGTCTAAG
16043707 CCCTAGTCAA
Statistics
Matches: 256, Mismatches: 76, Indels: 25
0.72 0.21 0.07
Matches are distributed among these distances:
157 7 0.03
158 90 0.35
159 140 0.55
160 13 0.05
161 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATCCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGAATCGACA
GCACGCAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16043893 original size:26 final size:26
Alignment explanation
Indices: 16043864--16043916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043854 GTTGACTTAG
*
16043864 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATCGAGTTCATCCCCAGTCTAA
*
16043890 GCATATCGAGTTCATTCCCAGTCTAA
1 GCATATCGAGTTCATCCCCAGTCTAA
16043916 G
1 G
16043917 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATCGAGTTCATCCCCAGTCTAA
Found at i:16044207 original size:26 final size:26
Alignment explanation
Indices: 16044178--16044230 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16044168 GTTGGCTTAG
*
16044178 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16044204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16044230 G
1 G
16044231 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16044418 original size:325 final size:314
Alignment explanation
Indices: 16043846--16044432 Score: 752
Period size: 325 Copynumber: 1.8 Consensus size: 314
16043836 CATACGCTCA
* *
16043846 TTTCGTTGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATCGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATCGAGTTCATTCCCAG
* *
16043911 TCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGAAATCGGGCC
66 TCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGAAATCGGGCC
* ** *
16043976 GATCCCCGTCTTGTACATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
131 GATCCCCGGCTTACACATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACACCCGTTTCGTGGGTT
* * * * *
16044041 GGCTTAGGTATAGGGAGTTCATTCCATGTCTCAGCCCTAGCTGGATCGAGGGTTGTGGCAGTGGG
196 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGCAGTAGG
16044106 ACTGACAACACACAGAGAGGGACCGAGTCGATCGGCTGAGCGCTCGCACGTTCG
261 ACTGACAACACACAGAGAGGGACCGAGTCGATCGGCTGAGCGCTCGCACGTTCG
* * *
16044160 TTTCGTGGGTTGGCTTAGGCATACGGAGTTTAT-TCCATGTCTAAGCATA-CGGAGTTCATTCCC
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATC-GAGTTCATTCCC
*
16044223 AGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAACAGGACCAGCTATAGGATCGACAGCACGTA
64 AGTCTAAGATCAGACCAGACCAAGGGTT---G---CA--A-CAGC---AGGATCGACAGCACGCA
* * * * ** *
16044288 GGGG-GATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGATC-GACTGAGCGCCCGTACA
117 GGGGAAATCGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGGCCAG-CTGAGCGCCCGCACA
** *
16044351 CTGGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCTAG-TCGGACCGA
181 CCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCT-GGACCGA
16044415 GGGTTGTGGCAGTAGGAC
245 GGGTTGTGGCAGTAGGAC
16044433 CGGCAACAGG
Statistics
Matches: 230, Mismatches: 27, Indels: 21
0.83 0.10 0.08
Matches are distributed among these distances:
313 4 0.02
314 78 0.34
317 1 0.00
320 2 0.01
322 1 0.00
323 4 0.02
324 2 0.01
325 118 0.51
326 20 0.09
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (314 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATCGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGAAATCGGGCC
GATCCCCGGCTTACACATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACACCCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGCAGTAGG
ACTGACAACACACAGAGAGGGACCGAGTCGATCGGCTGAGCGCTCGCACGTTCG
Found at i:16044571 original size:171 final size:168
Alignment explanation
Indices: 16044204--16044571 Score: 411
Period size: 171 Copynumber: 2.2 Consensus size: 168
16044194 CCATGTCTAA
** *
16044204 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAACAGGACCAGCT
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCAGACCAGACCAAGGGTTGCGGCAACAGGACCAGCA
* * * * * *
16044269 ATAGGATCGACAGCACGTAGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGATC
65 ACAGGATCGACAGCACGCAGGGGGATCGGCTCGATCCCCGGCTTACGCATTATGCCTCTCCGACC
* * * *
16044334 GACTGAGCGCCCGTACACTGGTTTCGTGGGTTGGCTTAG
130 GACTGAGCACCCGTACACTCGTTTCGTGGGTTGACTCAG
** * * * * ** *
16044373 GCATACGGAGTTCATTTCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAGTAGGACCGGC
1 GCATACGGAGTTCATCCCA-GTCTAAGCCC-AGACCAGACCAAGGGTTGCGGCAACAGGACCAGC
16044437 AACAGGATCGACAGCACGCAGAGAGGGATCGAGCT-GATCCCCGGCTTACGCATTATGCCTCTCC
64 AACAGGATCGACAGCACGCAG-G-GGGATCG-GCTCGATCCCCGGCTTACGCATTATGCCTCTCC
*
16044501 GACCGGCTGAGCACCC-T-CATGCTCGTTTCGTGGGTTGACTCAG
126 GACCGACTGAGCACCCGTACA--CTCGTTTCGTGGGTTGACTCAG
*
16044544 GCATACGGAGTTCATCCCCAATCTAAGC
1 GCATACGGAGTTCAT-CCCAGTCTAAGC
16044572 ATACGGAGTT
Statistics
Matches: 165, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
168 3 0.02
169 66 0.40
170 4 0.02
171 88 0.53
172 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (168 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCAGACCAGACCAAGGGTTGCGGCAACAGGACCAGCAA
CAGGATCGACAGCACGCAGGGGGATCGGCTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
ACTGAGCACCCGTACACTCGTTTCGTGGGTTGACTCAG
Found at i:16044580 original size:26 final size:26
Alignment explanation
Indices: 16044544--16044596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16044534 GTTGACTCAG
16044544 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16044570 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16044596 G
1 G
16044597 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16045029 original size:158 final size:157
Alignment explanation
Indices: 16044567--16045071 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
16044557 ATCCCCAATC
* * * ** *
16044567 TAAGCATACGGAGTTCATTCCCTATCTAAGATCAGATTGGACCGAGGGTTGAGGCAGTAGGATCG
1 TAAGCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGA-GCAGCAGGATCG
* * *
16044632 ACAGCACGCAGGGTGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGC
65 ACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGTTAAGC
* * * *
16044697 GCCCGCACACCCATTTTATGGGTTGG-CT
130 GCCCGCACGCTCGTTTCATGGG-TGGACT
* * ** * * * * * *
16044725 TAGGCGTAGGGAGTTCATTCCATGTTTAAGACCCAG-TCAGATCGAGGGTTGTAGTAGCGGGACC
1 TAAGCATACAGAGTTCATTCCATGTCTAAGA-TCAGATCAGACCGAGGGTTG-AGCAGCAGGATC
* * * * * *
16044789 GACAGCACGTAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGCCCGGCTCA
64 GACAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGTTAA
*
16044854 GCGCCCGTACGCTCGTTTCATGGGTGGACT
128 GCGCCCGCACGCTCGTTTCATGGGTGGACT
* * *
16044884 TAAGCATACAGAGTTTATTCCCA-GTCTAAGATCAGATCAAACCGAGGGTTGCGCCAGCAGGATC
1 TAAGCATACAGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGAG-CAGCAGGATC
* * * * * *
16044948 GACAGCACGCAGGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGCCTCTGCGGCCTGTTAAG
64 GACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGTTAAG
** * **
16045013 CATCCGCACGCTCGTTTCGTGGGTTTACT
129 CGCCCGCACGCTCGTTTCATGGGTGGACT
* *
16045042 GAGGCATACAGAGTTCATTCCATGTCTAAG
1 TAAGCATACAGAGTTCATTCCATGTCTAAG
16045072 CATACGAAGT
Statistics
Matches: 279, Mismatches: 60, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 151 0.54
159 122 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
TAAGCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGAGCAGCAGGATCGA
CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGTTAAGCG
CCCGCACGCTCGTTTCATGGGTGGACT
Found at i:16045095 original size:26 final size:26
Alignment explanation
Indices: 16045045--16045097 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16045035 GTTTACTGAG
*
16045045 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16045071 GCATAC-GAAGTTCATTCCCA-ATCTAA
1 GCATACAG-AGTTCATT-CCATATCTAA
16045097 G
1 G
16045098 ATTTTGAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16046142 original size:159 final size:157
Alignment explanation
Indices: 16045758--16046264 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 157
16045748 TCCAGTCTAA
* * * * * *
16045758 GCATATGGAGTTCATTCCTTGTCTAAGATCGGGCTGGACTGAGGATGGCGGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCATGTCTAAGATC-AGCCGAACTGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * **
16045823 GCACGCAGGGGGGATCGGGCCAATCCCTGACTTGCACATTCTGCCTCGCCGGTCGGTTGAGCACC
65 GCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGTGCC
*
16045888 CGCACGCCCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * * * **
16045916 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGCGGGACCCCC
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGCCGA-ACTGAGGGTTGCGGTAGCAGGATCGAC
* * * ** *
16045980 AGCACGCAGAGGTGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACCAGCTCAGTG
64 AGCACGCAG-GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGTG
* * *
16046045 CCCGCACGCTCGTTTCATGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
16046075 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACTGAGGGTTACAGTAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAG-CCGAACTGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * *
16046139 AGCACGTAGGTGGGGACCAGGCCGATCCCTGGCTGGTGCATTCTACCTCTTCGGTCAGCTGAGTG
64 AGCACGCAGG-GGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGTG
16046204 CCCGCACGCACGCTCATTTCGTGGGTTGGCTTAG
128 --C-C-CGCACGCTCATTTCGTGGGTTGGCTTAG
16046238 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
16046265 CATATGGAGT
Statistics
Matches: 272, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
158 57 0.21
159 159 0.58
160 4 0.01
161 1 0.00
162 4 0.01
163 47 0.17
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGCCGAACTGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGTGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16046274 original size:26 final size:26
Alignment explanation
Indices: 16046238--16046290 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16046228 GTTGGCTTAG
16046238 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
16046264 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16046290 G
1 G
16046291 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16047290 original size:316 final size:317
Alignment explanation
Indices: 16046779--16047461 Score: 967
Period size: 316 Copynumber: 2.2 Consensus size: 317
16046769 CGCCTGCACA
*
16046779 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAG
1 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAG
* *
16046844 GGTTGTGGCAGTTGGACCAGCAGCATGCAGAGGGGGACCGGACCGATCCCCGGCTTGCGCATTAT
66 GGTTGTGGCAGTCGGACCAGCAGCATGCAGAGGGGGACCGGACCGATCCCCAGCTTGCGCATTAT
* * * **
16046909 ACCTCGTCGATTGGCCCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCA
131 ACCTCGTCGATCGGCCCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCA
* * * *
16046974 TTCCAAGTCTAAGATCGGACTGGACTGAGGGTTGCGACAGCAGGACTGACAGCATGTAGGGGGGA
196 TTCCAAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGA
* * *
16047039 TCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGGCCGATTGAGCCCCCGTACG
261 TCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGACCGATTGAACCCCCATACG
* *
16047096 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TGGAACCGA
1 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG-ACCGA
* * *
16047160 -GGTTGTGGCAG-CGAGACCGGCAGCATGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATT
65 GGGTTGTGGCAGTCG-GACCAGCAGCATGCAGAGGGGGACCGGACCGATCCCCAGCTTGCGCATT
* ** * * * *
16047223 ATTCCTTTTCGCTCGGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAAAGTT
129 ATACCTCGTCGATCGGCCCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTT
* **
16047288 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGGGGG
194 CATTCCAAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGG
* * * *
16047353 GATCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCCCATACG
259 GATCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGACCGATTGAACCCCCATACG
** * * * *
16047412 CTTGTTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCATCTCTAAGC
1 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16047462 ATATGGAGTT
Statistics
Matches: 323, Mismatches: 41, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
315 1 0.00
316 264 0.82
317 58 0.18
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (317 bp):
CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAG
GGTTGTGGCAGTCGGACCAGCAGCATGCAGAGGGGGACCGGACCGATCCCCAGCTTGCGCATTAT
ACCTCGTCGATCGGCCCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCA
TTCCAAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGA
TCGGGCCGGACCCCGACTTGCGCATTCTACCTCTCCGACCGATTGAACCCCCATACG
Found at i:16047459 original size:158 final size:157
Alignment explanation
Indices: 16046742--16047460 Score: 635
Period size: 158 Copynumber: 4.5 Consensus size: 157
16046732 CCTTGGCTTA
* * * * * * * * * *
16046742 CGCATTCTGCCTCTCCTGCTGGCTGAGCGCCTGCACACCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTACCTCTCC-GCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * ** * * **
16046807 GGAGTTCATTCCATGTCTAAG-CCCCAGCTAGACCGAGGGTTGTGGCAGTTGGACC-AGCAGCAT
65 GAAGTTCATTCCATGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGCAGCAGGACCGA-CAGCAT
* * * *
16046870 GCAGAGGGGGACCGGACCGATCCCCGGCTTG
128 GCAG-GGGGGATCGGGCCGGTCCCCGACTTG
* ** *** * * *
16046901 CGCATTATACCTCGT-CGATTGGCCCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATA
1 CGCATTCTACCTC-TCCG-CCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
16046965 CGGAGTTCATTCCAAGTCTAAGATCGGACTGGACTGAGGGTTGCGACAGCAGGACTGACAGCATG
64 CGAAGTTCATTCCATGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGCATG
* *
16047030 TAGGGGGGATCGGGCCGGACCCCGACTTG
129 CAGGGGGGATCGGGCCGGTCCCCGACTTG
* * * * * *
16047059 CGCATTCTACCTCTCCGGCCGATTGAGCCCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
1 CGCATTCTACCTCTCC-GCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * ** * * *
16047124 GGAGTTCATTCCATGTCTAAG-CCCCAGTGGAACCGA-GGTTGTGGCAGC-GAGACCGGCAGCAT
65 GAAGTTCATTCCATGTCTAAGATCGGACTGG-ACCGAGGGTTGCGGCAGCAG-GACCGACAGCAT
*
16047186 GCAGAGGGGGATCGGGCCGATCCCC-AGCTTG
128 GCAG-GGGGGATCGGGCCGGTCCCCGA-CTTG
* * * * * * *
16047217 CGCATTATTCCTTTTCGCTCGGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATAC
1 CGCATTCTACCTCTCCGC-CGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
16047282 AAAGTTCATTCCCA-GTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGACCGACAGCACG
65 GAAGTTCATT-CCATGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGCATG
16047346 CAGGGGGGATCGGGCCGGTCCCCGACTTG
129 CAGGGGGGATCGGGCCGGTCCCCGACTTG
* * * * * *
16047375 CGCATTCTGCCTCTCCGACCGGTTGAACGCCCATACGCTTGTTTCGTGGGTTGGCTTGGGCATAC
1 CGCATTCTACCTCTCCG-CCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
16047440 GAAGTTCATTCCATCTCTAAG
65 GAAGTTCATTCCATGTCTAAG
16047461 CATATGGAGT
Statistics
Matches: 446, Mismatches: 96, Indels: 37
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 35 0.08
158 274 0.61
159 131 0.29
160 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
CGCATTCTACCTCTCCGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
AAGTTCATTCCATGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGCATGCA
GGGGGGATCGGGCCGGTCCCCGACTTG
Found at i:16047834 original size:159 final size:159
Alignment explanation
Indices: 16047522--16048524 Score: 558
Period size: 159 Copynumber: 6.1 Consensus size: 159
16047512 AGCAGGAACA
* * * * * *
16047522 GCAGCAGGATCGGCAGCATGCAG-GGGGGATCGGGCCGATCCCCAGCTTACGCATTTTACCTCTC
1 GCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTC
* *
16047586 CAGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 TAGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
16047651 TCTAAGCCCCAGTCGGACTAAGGGTTCTG
131 TCTAAGCCCCAGTCGGACCAAGGGTTCTG
* * * * *
16047680 GTAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCCCATTCTACCTCTC
1 GCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTC
* *
16047745 TAGCTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 TAGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
16047810 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGG
131 TCTAAGCCCCAGTCGGACCAAGGG-T-T--C--T--G
* * * * *
16047847 ACCAGCAGCGGGATCGACAGCACGCAGAGGGGGA-CTGGGCTGATCCCCAGCTTGCACATTATGC
1 ----GCAGCGGGATCGACAGCACGCAGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTAC
* * * *
16047911 CTCT-TCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-
61 CTCTCTAG-CTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* *** *** * ** ** *
16047974 TCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
125 TCCAT-GTCTAAGC---CCCAG-TCGGACCAAGGGT--TCTG
* * * * * * * *
16048016 GAATC-AGATCGAGAGTTACGGTAGTAGGATCGGTGGCATGCAGGGGGGATCGGGCCAATCCTCG
1 GCAGCGGGATCGACAG-CAC-GCAG-A-G---GG-GG-AT-C-----GG-----GCCGATCCCCG
* * * * * * * * *
16048080 GATTGTGCATTCTGCCTCTCCA-ATCGATTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
46 GCTTGCGCATTCTACCTCTCTAGCT-GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** *
16048144 GCATAATGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAAGGGTTCTG
110 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTCTG
* * * * * *
16048194 GCAGCGGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGGCTTGCGTATTAC-GCCTCT
1 GCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATT-CTACCTCT
* * * * * * *
16048258 TTGGC-CAGCTCAGTGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGCA-TTCATTCC
65 CTAGCTGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATT-C
* ** * * * *
16048321 CA-GTCTATGATCC-GACCGAACCGAGGGTTATG
127 CATGTCTAAGCCCCAG-TCGGACCAAGGGTTCTG
* * ** * * *
16048353 GTAGCAGGATCGATGGCACGCA-AGAGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCT
1 GCAGCGGGATCGACAGCACGCAGAG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCT
* ** * * * *
16048417 CTAG-TCGGCTGAATGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
65 CTAGCT-GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
** * * * *
16048481 CATCTAAGCCCCA-TCCAGATCGAGGGTTGTG
129 TGTCTAAGCCCCAGT-CGGACCAAGGGTTCTG
*
16048512 GCAGCAGGATCGA
1 GCAGCGGGATCGA
16048525 TAGCGCAATT
Statistics
Matches: 629, Mismatches: 157, Indels: 117
0.70 0.17 0.13
Matches are distributed among these distances:
158 27 0.04
159 326 0.52
160 6 0.01
161 1 0.00
163 1 0.00
164 9 0.01
165 6 0.01
166 3 0.00
167 2 0.00
168 1 0.00
169 1 0.00
170 8 0.01
171 116 0.18
172 4 0.01
173 1 0.00
174 3 0.00
175 8 0.01
176 1 0.00
177 3 0.00
178 6 0.01
179 9 0.01
180 6 0.01
181 2 0.00
184 75 0.12
185 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTC
TAGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGTCGGACCAAGGGTTCTG
Found at i:16047990 original size:26 final size:26
Alignment explanation
Indices: 16047960--16048012 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16047950 GTTGACTTAG
16047960 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
16047986 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16048012 G
1 G
16048013 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16048160 original size:514 final size:506
Alignment explanation
Indices: 16047023--16048489 Score: 1468
Period size: 514 Copynumber: 2.9 Consensus size: 506
16047013 GCAGGACTGA
* * *
16047023 CAGCATGTAGGGGGGATCGGGCCGGA-CCCCGACTTGCGCATTCTACCTCTCCGGCCGATTGAGC
1 CAGCATGCAGGGGGGATCGGGCC-GATCCCAGA-TTGCGCATTCTACCTCTCCAGCCGATTGAGC
* * *
16047087 CCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
64 GCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGT
** * * * * *
16047152 -GGAACCGA-GGTTGTGGCAGCGAGACCGGCAGCATGCAGAGGGGGATCGGGCCGATCCCCAGCT
129 CGG-ACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCT
* * * * * * *
16047215 TGCGCATTATTCCT-TTTCGCTCGGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCA
193 TGCGCATTCTACCTCTTTAGCT-GACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
** * * *
16047279 TACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGACCGACAGCA
257 TACGGAGTTCATT-CCAGTCTAAGACCAGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGCA
* * * * *
16047344 CGCAGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCCCAT
321 CGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAACGCCCAC
* * * * *
16047409 ACGCTTGTTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCATCTCTAAGCATATGGAGTTCA
386 ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATCTCTAAGCATATGGAGTTCA
*
16047474 TTCCCAATCTAAGATCGAACTAGACCAAAGGTTGTGATAGCAGGAACAGCAGCAGGATCGG
451 TTCCCAATCTAAGATCGAACTAGACCAAAGGTAGT-ATAGCA-G---AGCAGCAGGATCGG
* * * *
16047535 CAGCATGCAGGGGGGATCGGGCCGATCCCCAGCTTACGCATTTTACCTCTCCAGCCGACTGAGCG
1 CAGCATGCAGGGGGGATCGGGCCGAT-CCCAGATTGCGCATTCTACCTCTCCAGCCGATTGAGCG
* * * *
16047600 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
16047665 GGACTAAGGGTTCTGGTAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTG
130 GGACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTG
* * * *
16047730 CCCATTCTACCTCTCTAGCTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
195 CGCATTCTACCTCTTTAGCTGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
16047795 GGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGTAGGACCAGCAGCGGG
260 GGAGTTCATTCCA-GTCTAAG-ACCAGACTGGACCGAGGG-T-T-GC----GG--CAGCA---GG
* * *
16047859 ATCGACAGCACGCAGAGGGGGA-CTGGGCTGATCCCC-AGCTTGCACATTATGCCTCTTCGACCG
311 ACCGACAGCACGCAG-GGGGGATC-GGGCCGATCCCCGA-CTTGCACATTATGCCTCTCCGACCG
* * * *
16047922 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGTCTAA
373 GCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCAT-CTCTAA
* * * * *
16047986 GCATATGGAGTTCATTCCCAGTCTAAGATCGAA-TCAGATC-GA-G-AGT-TA-C-G-GTAGTAG
437 GCATATGGAGTTCATTCCCAATCTAAGATCGAACT-AGACCAAAGGTAGTATAGCAGAGCAGCAG
16048043 GATCGG
501 GATCGG
** * * * * **
16048049 TGGCATGCAGGGGGGATCGGGCCAATCCTCGGATTGTGCATTCTGCCTCTCCAATCGATTGAGCG
1 CAGCATGCAGGGGGGATCGGGCCGATCC-CAGATTGCGCATTCTACCTCTCCAGCCGATTGAGCG
*
16048114 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAATGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
16048179 GGACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGGCTTG
130 GGACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTG
* * * * * *
16048244 CGTATTAC-GCCTCTTTGGC-CAGCTCAGTGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCAT
195 CGCATT-CTACCTCTTTAGCTGA-CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * ** * * **
16048307 ACGGCA-TTCATTCCCAGTCTATGATCC-GACCGAACCGAGGGTTATGGTAGCAGGATCGATGGC
258 ACGG-AGTTCATT-CCAGTCTAAGA-CCAGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGC
* * * * * * *
16048370 ACGCAAGAGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCT-CTAGTCGGCTGAATGCC
320 ACGC-AGGGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGA-CCGGCTGAACGCC
* * * * * *
16048434 CGCACACTCATTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCA-CATCTAAGC
383 CACACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATCCCATC-TCTAAGC
16048490 CCCATCCAGA
Statistics
Matches: 796, Mismatches: 121, Indels: 86
0.79 0.12 0.09
Matches are distributed among these distances:
501 2 0.00
502 101 0.13
503 4 0.01
505 4 0.01
507 2 0.00
511 2 0.00
512 115 0.14
513 134 0.17
514 265 0.33
515 6 0.01
516 2 0.00
518 1 0.00
520 3 0.00
521 2 0.00
522 4 0.01
523 2 0.00
524 1 0.00
525 21 0.03
526 125 0.16
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (506 bp):
CAGCATGCAGGGGGGATCGGGCCGATCCCAGATTGCGCATTCTACCTCTCCAGCCGATTGAGCGC
CCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCG
GACTAAGGGTTCTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGC
GCATTCTACCTCTTTAGCTGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCAGTCTAAGACCAGACTGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAG
GGGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTGAACGCCCACACGCT
CGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATCTCTAAGCATATGGAGTTCATTCCC
AATCTAAGATCGAACTAGACCAAAGGTAGTATAGCAGAGCAGCAGGATCGG
Found at i:16048681 original size:26 final size:24
Alignment explanation
Indices: 16048652--16048705 Score: 81
Period size: 26 Copynumber: 2.2 Consensus size: 24
16048642 TAGGCATACA
16048652 GAGTTCATCCCCAGTCTAAGCATATG
1 GAGTTCATCCCCAGTCTAAG-AT-TG
*
16048678 GAGTTCATTCCCAGTCTAAGATTG
1 GAGTTCATCCCCAGTCTAAGATTG
16048702 GAGT
1 GAGT
16048706 GGACCGAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 6 0.22
25 2 0.07
26 19 0.70
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
GAGTTCATCCCCAGTCTAAGATTG
Found at i:16048854 original size:685 final size:672
Alignment explanation
Indices: 16046326--16049174 Score: 2035
Period size: 685 Copynumber: 4.2 Consensus size: 672
16046316 AGTAGGACCA
* * * * * * * *
16046326 GTAGTAGGATCGACAGCACAC-AGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCCCTC
1 GTAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCT-
* * * ** *
16046390 CGACCAACTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
65 CTAGCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
* * * * * * *
16046455 TCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCAGGACCGGTAGCAG-GATCGGCAGCACGCAG
130 TCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCAGCAGC-GCAATCGACAGCACGCAG
* * * *
16046519 AGGGGGACCGAGTTGATCCCC-GACTTGCGCATTTTGCCTCTTTGGCCAGCATCTCAGGCTGGTT
194 AGGGGGACCGGGCTGATCCCCAG-CTTGCACATTATGCCTC-TT---C-G-A-C-C-GGC----T
* * * * * * *
16046583 GAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCAT
245 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAT
* * * * * * * * * * *
16046648 AAGGAGTTGATTCCC-GTGTAGGATTGGATCGGACTGA-AGGTTGTC-GCAACAGGATCGGCAGC
310 ATGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGA-GTT-ACGGCAGCAGGATCGACAGC
* * * * ** * * * ** * * * *
16046710 AAGTATGGGGGACCGGGCCAATCCTTGGCTTACGCATTCTGCCTCTCCTGCTGGCTGAGCGCCTG
373 ACGCAGGGGGGATCGGGCCAATCCCCGGATTGCGCATTCTACCTCTCCAACCGACTGAGCACCCG
* * * * * *
16046775 CACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGAC
438 TACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAT
* * ** ** * *
16046840 CGAGGGTTGTGGCAGTTGGACCAGCAGCATGCAGAGGGGGACCGGACCGATCCCCGGCTTGCGCA
503 CAAGGGTTCTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCAGACCGATCCCCAGCTTGCGCA
** * **** * * * * * * *
16046905 TTATACCTCGTCGATTGGCCCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAG
568 TTACGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * **
16046970 TTCATTCCAAGTCTAAGATCGGACTGGACTGAGGGTTGCG
633 TTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTATG
** * * * * *
16047010 ACAGCAGGA-CTGACAGCATG-TAGGGGGGATCGGGCCGGA-CCCCGACTTGCGCATTCTACCTC
1 GTAGCAGGATC-GACAGCACGCAAGAGGGGATCGGGCC-GATCCCCGGCTTGCACATTCTACCTC
** * ** * * * **
16047072 TCCGGCCGATTGAGCCCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
64 TCTAG-CGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
* * *
16047137 TGTCTAAGCCCCAGT-GGAACCGA-GGTTGTGGCAGC--G---AG-A---C---CGGCAGCATGC
128 TGTCTAAGCCCCAGTCAG-ACCGAGGGTTGTGGCAGCAGGACCAGCAGCGCAATCGACAGCACGC
* * * * * * *
16047188 AGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATTCCTTTTCG-CTCGGCTCAGCGCCCGTA
192 AGAGGGGGACCGGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGAC-CGGCTGAGCGCCCGCA
** * * *
16047252 CGCTCGTTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAG-AT-CGGA---C--
256 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCAT
* * *
16047310 T----G-----GA-C----C-GA--G-G-GTTGCGGTAGCAGGACCGACAGCACGCAGGGGGGAT
321 TCCCAGTCTAAGATCGAATCAGACCGAGAGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGAT
** * * ** * * * **
16047356 CGGGCCGGTCCCC-GACTTGCGCATTCTGCCTCTCCGACCGGTTGAACGCCCATACGCTTGTTTC
386 CGGGCCAATCCCCGGA-TTGCGCATTCTACCTCTCCAACCGACTGAGCACCCGTACGCCCGTTTC
* * * *
16047420 GTGGGTTGGCTTGGGCATACGAAGTTCATTCCATCTCTAAGCATATGGAGTTCATTCCCAATCTA
450 GTGGGTTGGCTTAGGCATAAGGAGTTCATTCCA--TGT---C-TA---AG------CCC---C--
* * * ** * *
16047485 AGATCGAACTAGACCAAAGGTTGTGATAGCAGGAACAGCAGCAGGATCGGCAGCATGCAGGGGGG
495 AG--C---C-AGATCAAGGGTTCTGGCAGC-GGGAC--CAGCA-G--C-ACA-CA-G-A-GGGGG
* * * * *** * * *
16047550 ATCGGGCCGATCCCCAGCTTACGCATTTTACCTCTCCAGCC-GACTGAGCGCCCGCACGCTCGTT
543 ACCAGACCGATCCCCAGCTTGCGCATTACGCCTCTTCGGCCAG-CTCAGCGCCCGCACGCTCGTT
* * * *
16047614 TCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACTAAGGGTT
607 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCCGA-CCGGACTGAGGGTT
*
16047677 CTG
670 ATG
* * * * *
16047680 GTAGCGGGACCGACAGCACGC-AGAGGGGGATCGGGTCGATCCTCGGCTTGCCCATTCTACCTCT
1 GTAGCAGGATCGACAGCACGCAAGA-GGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCT
*
16047744 CTAGCTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CTAGC-GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
* * **
16047809 GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGACCAGCAGCGGGATCGACAGCACGCAG
129 GTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGCAATCGACAGCACGCAG
*
16047874 AGGGGGACTGGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGC
194 AGGGGGACCGGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGC
* *
16047939 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCC
259 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
* * * *** *
16048004 CAGTCTAAGATCGAATCAGATCGAGAGTTACGGTAGTAGGATCGGTGGCATGCAGGGGGGATCGG
324 CAGTCTAAGATCGAATCAGACCGAGAGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGG
* * * * * *
16048069 GCCAATCCTCGGATTGTGCATTCTGCCTCTCCAATCGATTGAGCGCCCGTACGCCCGTTTCGTGG
389 GCCAATCCCCGGATTGCGCATTCTACCTCTCCAACCGACTGAGCACCCGTACGCCCGTTTCGTGG
* * *
16048134 GTTGGCTTAGGCATAATGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CTAAGGGTTCTGGCAG
454 GTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC-AAGGGTTCTGGCAG
* * * *
16048198 CGGGACC-GACAGCACGCAGAGGGGGACCAGACCGATCCCCGGCTTGCGTATTACGCCTCTTTGG
518 CGGGACCAG-CAGCACACAGAGGGGGACCAGACCGATCCCCAGCTTGCGCATTACGCCTCTTCGG
* * *
16048262 CCAGCTCAGTGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGCA-TTCATTCCCAGTC
582 CCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTC
* * *
16048326 TATGATCCGACCGAACCGAGGGTTATG
646 TAAGATCCGACCGGACTGAGGGTTATG
** * *
16048353 GTAGCAGGATCGATGGCACGCAAGAGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTC
1 GTAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTC
* * * * **
16048418 TAGTCGGCTGAATGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCACA
66 TAG-CGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
* * * * *
16048483 TCTAAGCCCCA-TCCAGATCGAGGGTTGTGGCAGCAGGATC-GATAGCGCAATTGGCAGCACGCA
130 TCTAAGCCCCAGT-CAGACCGAGGGTTGTGGCAGCAGGACCAG-CAGCGCAATCGACAGCACGCA
* * * *
16048546 GAGGGGGACCGGGCTTATCTCGA-CTTGCACATTATGCCTCTCCGGTCGGCCTCTCCGGCCGGCT
193 GAGGGGGACCGGGCTGATCCCCAGCTTGCACATTATG-----CC--T----CT-T-CGACCGGCT
* **
16048610 GAGCGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAT
245 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAT
* * * * *
16048675 ATGGAGTTCATTCCCAGTCTAAGATTGGAGT-GGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
310 ATGGAGTTCATTCCCAGTCTAAGA-TCGAATCAGACCGAGAGTTACGGCAGCAGGATCGACAGCA
* ** * * *
16048739 CGTAGGGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGT
374 CGCAGGGGGGATCGGGCCAATCCCCGGATTGCGCATTCTACCTCTCCAACCGACTGAGCACCCGT
*
16048804 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC
439 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC
* * * * * * *
16048869 GAGGGTTGTGGCAGTGGGACCAGTAGCACATAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCAT
504 AAGGGTTCTGGCAGCGGGACCAGCAGCACACAGAGGGGGACCAGACCGATCCCCAGCTTGCGCAT
* ** * * * * * *
16048934 TATGCCTCTTCGGCTGGGTCAGCACCCGTACACTTGTTTCATGGGTTGGCTTATGCATACGGAGT
569 TACGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
16048999 TCATTCTCAGTCTAAGAT-CGAACCGGACTGAGGGTTACG
634 TCATTCCCAGTCTAAGATCCG-ACCGGACTGAGGGTTATG
* * * * * * *
16049038 GTAGCAGGATGGACAGCACGCATGGGGGGATCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTC
1 GTAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTC
** ** * * * * *
16049103 CGGCCGACTGAGCACCCACACGCTTGTTTCGTAGGTTGGCATAGGCATATAGAGTTCATTCCATG
66 TAG-CGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
16049168 TCTAAGC
130 TCTAAGC
16049175 ATATGGAGTT
Statistics
Matches: 1714, Mismatches: 326, Indels: 249
0.75 0.14 0.11
Matches are distributed among these distances:
632 2 0.00
633 99 0.06
635 3 0.00
637 2 0.00
638 2 0.00
639 2 0.00
642 2 0.00
643 2 0.00
648 4 0.00
651 2 0.00
653 2 0.00
655 1 0.00
656 3 0.00
657 2 0.00
658 53 0.03
659 15 0.01
660 3 0.00
662 8 0.00
663 4 0.00
665 1 0.00
666 1 0.00
667 3 0.00
668 1 0.00
669 6 0.00
670 120 0.07
671 149 0.09
672 29 0.02
673 276 0.16
674 14 0.01
675 1 0.00
676 2 0.00
677 6 0.00
678 3 0.00
679 1 0.00
680 2 0.00
681 4 0.00
683 22 0.01
684 241 0.14
685 478 0.28
686 9 0.01
689 1 0.00
690 2 0.00
691 1 0.00
692 1 0.00
695 4 0.00
700 2 0.00
701 3 0.00
704 2 0.00
705 2 0.00
706 2 0.00
708 3 0.00
709 1 0.00
710 108 0.06
711 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (672 bp):
GTAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTC
TAGCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
CTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGCAATCGACAGCACGCAGAG
GGGGACCGGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
GTCTAAGATCGAATCAGACCGAGAGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGC
CAATCCCCGGATTGCGCATTCTACCTCTCCAACCGACTGAGCACCCGTACGCCCGTTTCGTGGGT
TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCAAGGGTTCTGGCAGCGG
GACCAGCAGCACACAGAGGGGGACCAGACCGATCCCCAGCTTGCGCATTACGCCTCTTCGGCCAG
CTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCCGACCGGACTGAGGGTTATG
Found at i:16049033 original size:159 final size:157
Alignment explanation
Indices: 16048671--16049173 Score: 386
Period size: 159 Copynumber: 3.2 Consensus size: 157
16048661 CCCAGTCTAA
* * * ** * *
16048671 GCATATGGAGTTCATTCCCAGTCTAAGATTGGAGTGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGACCGACA
* * * * * *
16048736 GCACGTAGGGGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACC
65 GCACATAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAGCACC
* *
16048801 CGTACGCCCGTTTCGTGGGTTGGCTTAG
130 CGTACACCCGTTTCATGGGTTGGCTTAG
* ** * * * * **
16048829 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA-TCGAGGGTTGTGGCAGTGGGACC-AG
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGAACCGGACT-GAGGGTTGCGGCAGCAGGACCGA-
* * * * * *
16048892 TAGCACATAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCTGGGTCAGC
63 CAGCACATAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAGC
** *
16048957 ACCCGTACACTTGTTTCATGGGTTGGCTTAT
127 ACCCGTACACCCGTTTCATGGGTTGGCTTAG
* * **
16048988 GCATACGGAGTTCATTCTCAGTCTAAGATCGAACCGGACTGAGGGTTACGGTAGCAGGATGGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGACCGACA
* * * ** * * * * * *
16049053 GCACGCAT-GGGGGGATCAGGCTGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCA
65 GCA--CATAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAGCA
* * * *
16049117 CCC--ACACGCTTGTTTCGTAGGTTGGCATAG
128 CCCGTACAC-C-CGTTTCATGGGTTGGCTTAG
**
16049147 GCATATAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16049174 CATATGGAGT
Statistics
Matches: 268, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
157 8 0.03
158 51 0.19
159 201 0.75
160 5 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGACCGACAG
CACATAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAGCACCC
GTACACCCGTTTCATGGGTTGGCTTAG
Found at i:16049183 original size:26 final size:26
Alignment explanation
Indices: 16049147--16049199 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16049137 GTTGGCATAG
16049147 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
*
16049173 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
16049199 G
1 G
16049200 GTTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:16049885 original size:26 final size:26
Alignment explanation
Indices: 16049849--16049901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16049839 GTTGACTTAG
16049849 GCATATAGAGTTCAACCCCAGTCTAA
1 GCATATAGAGTTCAACCCCAGTCTAA
* **
16049875 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCAACCCCAGTCTAA
16049901 G
1 G
16049902 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATATAGAGTTCAACCCCAGTCTAA
Found at i:16050753 original size:26 final size:26
Alignment explanation
Indices: 16050723--16050775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16050713 GTTGACTTAG
*
16050723 GCATATAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16050749 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16050775 G
1 G
16050776 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16051133 original size:158 final size:159
Alignment explanation
Indices: 16050921--16051213 Score: 360
Period size: 158 Copynumber: 1.8 Consensus size: 159
16050911 GAGGTTGTGG
* ** * * *
16050921 CAGCAGGATCGGCAACATGCAGAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTTTTC
1 CAGCAGGATCGACAACATGCAGAGGGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCC
* * * * * * *
16050986 GGCCGGCTCAGCGCCCGTACGCTCATTTCATTGGTT-GACTTATGCATACGGAGTTTATTCCCA-
66 GACCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTAG-CTTAGGCATACAGAGTTCATT-CCAT
16051049 GTCTAAGATCAGACCAAACCAAGGGTTGCGA
129 GTCTAAGATCAGACCAAACCAAGGGTTGCGA
* * *
16051080 CAGCAGGATCGATAACATGCAG-GGGGGA-CTGGGTCGATCCCTAACTTGCGCATTCTGCCTCTC
1 CAGCAGGATCGACAACATGCAGAGGGGGATC-GGGTCGATCCCCAACTTGCGCATTATGCCTCTC
* * *
16051143 CGACCGGCTAAGTGTCCGCACGCTCATTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATG
65 CGACCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATG
16051208 TCTAAG
130 TCTAAG
16051214 CATACGGAGT
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
157 4 0.04
158 87 0.78
159 21 0.19
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (159 bp):
CAGCAGGATCGACAACATGCAGAGGGGGATCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCC
GACCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGT
CTAAGATCAGACCAAACCAAGGGTTGCGA
Found at i:16054693 original size:158 final size:158
Alignment explanation
Indices: 16054412--16055064 Score: 557
Period size: 158 Copynumber: 4.1 Consensus size: 158
16054402 AAGCATATGA
** ** * ** * *
16054412 AGTTCATTCCCAGTCTAAG-ATTAGACTGGACCGAGGGTTGCGGCAGCATGATCGGCAGCACGCA
1 AGTTCATTCCCAGTCTAAGCACCA-ACCAGATCGAGGGTTATGGCAGCAGGATCAGCAGCACGCA
* * * * * * * *
16054476 GGGGGGAGCGGGCCGATCCCCGGCTTGCGGATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGC
65 GGGGGGACCAGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGC
* *
16054541 TCATTTCATGGGTTGGCTTAGGCATAGGG
130 TCATTTCATGGGTTGACTTAGGCATACGG
* * * * * * *
16054570 AGTTAATT-CCATGTCTAAGCCCCAACTAGACCCAGGGTTATGGCAGCGGGACCAGCAGCACGCA
1 AGTTCATTCCCA-GTCTAAGCACCAACCAGATCGAGGGTTATGGCAGCAGGATCAGCAGCACGCA
* * * **
16054634 GAGGGGGACCAGGTCGATCCCCGG-TTACGCATTATGCCTTTCTGGCCGGCTCAGTACCCGTTCG
65 G-GGGGGACCAGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACG
* *
16054698 CTCGTTTCGTGGGTTGACTTAGGCATACGG
129 CTCATTTCATGGGTTGACTTAGGCATACGG
* *
16054728 AGTTCATTCCCAGTCTAAG-ATCAGACCAGATCGAGGGTTATGGCAGCAGGATCAGCAGCACGTA
1 AGTTCATTCCCAGTCTAAGCACCA-ACCAGATCGAGGGTTATGGCAGCAGGATCAGCAGCACGCA
* * * **** * * ** *
16054792 GGGGGGACCAGGTCGATCCCCGGCTTGCACATTATGCCGCTCCAATTGGCTCAACGCCCTTACGT
65 GGGGGGACCAGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGC
16054857 TCATTTCATGGGTTGACTTAGGCATACGG
130 TCATTTCATGGGTTGACTTAGGCATACGG
* * * * * * * *
16054886 AGATCATTCCCAGTCTAAG-ATCGAACCAGATTGAGGGTTGTGGTAGTAAGATC-GACAGCATGC
1 AGTTCATTCCCAGTCTAAGCA-CCAACCAGATCGAGGGTTATGGCAGCAGGATCAG-CAGCACGC
* * * * * * * * **
16054949 AAGGGGGACCAGG-CTGATCCTCGACTTACGTATTCTGCCTCTCTGGCTGGCTGAGTGCCCGCAC
64 AGGGGGGACCAGGTC-GATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCAC
* * * *
16055013 GCTCGTTTCGTGGGCTGGCTTAGGCATACGG
128 GCTCATTTCATGGGTTGACTTAGGCATACGG
16055044 AGTTCATT-CCATGTCTAAGCA
1 AGTTCATTCCCA-GTCTAAGCA
16055065 TACGGAGTTC
Statistics
Matches: 396, Mismatches: 88, Indels: 21
0.78 0.17 0.04
Matches are distributed among these distances:
157 32 0.08
158 339 0.86
159 25 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGCACCAACCAGATCGAGGGTTATGGCAGCAGGATCAGCAGCACGCAG
GGGGGACCAGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACGG
Found at i:16055018 original size:316 final size:316
Alignment explanation
Indices: 16054412--16055062 Score: 727
Period size: 316 Copynumber: 2.1 Consensus size: 316
16054402 AAGCATATGA
* ** * * *
16054412 AGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGGCAGCATGATCGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAG
* * ** * * ** * *
16054477 GGGGGAGCGGGCCGATCCCCGGCTTGCGGATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCT
66 GGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCGCTCCAATCGGCTCAACACCCGCACGCT
* * * * *
16054542 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAACTAGACCCAGGG
131 CATTTCATGGGTTGACTTAGGCATACGGAGATAATTCCATGTCTAAGACCCAACCAGACCCAGGG
** *
16054607 TTATGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGTCGATCCCCGGTTACGCATTATGCC
196 TTATGGCAGCAAGACCAGCAGCACGCAGAGGGGGACCAGGTCGATCCCCGCTTACGCATTATGCC
* ** *
16054672 TTTCTGGCCGGCTCAGTACCCGTTCGCTCGTTTCGTGGGTTGACTTAGGCATACGG
261 TCTCTGGCCGGCTCAGTACCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGG
* * *
16054728 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTATGGCAGCAGGATCAGCAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAG
* * * ** *
16054793 GGGGGACCAGGTCGATCCCCGGCTTGCACATTATGCCGCTCCAATTGGCTCAACGCCCTTACGTT
66 GGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCGCTCCAATCGGCTCAACACCCGCACGCT
* * * ***
16054858 CATTTCATGGGTTGACTTAGGCATACGGAGATCATTCCCA-GTCTAAGATCGAACCAGATTGAGG
131 CATTTCATGGGTTGACTTAGGCATACGGAGATAATT-CCATGTCTAAGACCCAACCAGACCCAGG
* * * * * * * *
16054922 GTTGTGGTAGTAAGATC-GACAGCATGCA-AGGGGGACCAGG-CTGATCCTCGACTTACGTATTC
195 GTTATGGCAGCAAGACCAG-CAGCACGCAGAGGGGGACCAGGTC-GATCCCCG-CTTACGCATTA
* * * *
16054984 TGCCTCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGCTGGCTTAGGCATACGG
257 TGCCTCTCTGGCCGGCTCAGTACCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGG
16055044 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
16055063 CATACGGAGT
Statistics
Matches: 275, Mismatches: 55, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
314 1 0.00
315 23 0.08
316 248 0.90
317 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGCAG
GGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCGCTCCAATCGGCTCAACACCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACGGAGATAATTCCATGTCTAAGACCCAACCAGACCCAGGG
TTATGGCAGCAAGACCAGCAGCACGCAGAGGGGGACCAGGTCGATCCCCGCTTACGCATTATGCC
TCTCTGGCCGGCTCAGTACCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGG
Found at i:16055443 original size:26 final size:26
Alignment explanation
Indices: 16055404--16055456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16055394 GTTGACTTAG
16055404 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16055430 GCATACGGAA-TTCATTCCCAGTCTAA
1 GCATAC-GAAGTTCATCCCCAGTCTAA
16055456 G
1 G
16055457 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16055738 original size:158 final size:157
Alignment explanation
Indices: 16055516--16055928 Score: 347
Period size: 158 Copynumber: 2.6 Consensus size: 157
16055506 GGATCGAGCT
* * * *** * * * *
16055516 GATCCCCGGCTTGTGCATTCTGCCTCTCC-GACCAGCTGAGTGCCCGCACGCTCGTTTTACGGGT
1 GATCCCCGGCTTGAGCATTATGCCTCTCCAG-CCAGCTCAACACCCACACGCTCATTTCATGGGT
* * * *
16055580 TGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAAACCCA-ACCGGACCGAGGGTTGTGGTAGCG
65 TGGCTTA-GCATTGGGAGTTCATTCCATGTCTAAAA-CCAGACCAGACCGAGGCTTGCGGTAGCA
16055644 GGA-CAGACAGCACGTAAAGGGGGA-T-GGCTC
128 GGATC-GACAGCACGT-AAGGGGGACTGGGC-C
* * * * * * *
16055674 GATCCCCGGCTT-ACGCATTATGGCTCTTCGGCCAGCTCAACGCCCGCATGCTCATTTCGTGGGT
1 GATCCCCGGCTTGA-GCATTATGCCTCTCCAGCCAGCTCAACACCCACACGCTCATTTCATGGGT
* ** * * * * *
16055738 TGACTTATGCATACGGAGTTGATTCCCA-ATCTAAGATCAGACCAGACCGAGGCTTGCGGTAGTA
65 TGGCTTA-GCATTGGGAGTTCATT-CCATGTCTAAAACCAGACCAGACCGAGGCTTGCGGTAGCA
*
16055802 GGATCGACAGCACGTAGGGGGGACTGGGCC
128 GGATCGACAGCACGTAAGGGGGACTGGGCC
* * * * * *
16055832 GATCCTCGGCTTGAGCATTCTGCCTCTCCAGTCGGCTGAGCACCCACACGCTCATTTCATGGGTT
1 GATCCCCGGCTTGAGCATTATGCCTCTCCAGCCAGCTCAACACCCACACGCTCATTTCATGGGTT
*
16055897 GGCTTAGCA-TGCGGAGTTCAATCCATGTCTAA
66 GGCTTAGCATTG-GGAGTTCATTCCATGTCTAA
16055929 GCATACGGAG
Statistics
Matches: 200, Mismatches: 45, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 25 0.12
158 163 0.81
159 9 0.05
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
GATCCCCGGCTTGAGCATTATGCCTCTCCAGCCAGCTCAACACCCACACGCTCATTTCATGGGTT
GGCTTAGCATTGGGAGTTCATTCCATGTCTAAAACCAGACCAGACCGAGGCTTGCGGTAGCAGGA
TCGACAGCACGTAAGGGGGACTGGGCC
Found at i:16055931 original size:26 final size:26
Alignment explanation
Indices: 16055902--16055955 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16055892 GGGTTGGCTT
*
16055902 AGCATGCGGAGTTCAAT-CCATGTCTA
1 AGCATACGGAGTTCAATCCCA-GTCTA
*
16055928 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCAATCCCAGTCTA
16055954 AG
1 AG
16055956 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCAATCCCAGTCTA
Found at i:16056368 original size:159 final size:160
Alignment explanation
Indices: 16056039--16057347 Score: 872
Period size: 159 Copynumber: 8.2 Consensus size: 160
16056029 CCCAGTCTAA
*** * * * * *
16056039 GCATACGGAGTTCATTCTCA-GTCTAAG-ATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGG
1 GCATACGGAGTTCATTC-CATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
16056102 TAGCACGCAGA-GGGGACCAGGCCAATCCCCGACTTGCACATTCTGCCTCT-CTAGCTGGCTGAG
65 TAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATC-GGCTCAG
* *
16056165 CACCCGCACGCTTATTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * ** **
16056197 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACTGAGGGTTATGGCAGGGGGATCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * *
16056261 AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTTTTCG-GCTGGCTCAGT
66 AGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATC-GGCTCAGC
* * * **
16056325 GCTCGCTCGCTCATTTCATGGGTTAACTTAG
130 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
16056356 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * *
16056419 TAGCACGCA-AGGGGGACCAAGCCGATCCT-GAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
65 TAGCACGCAGAGGGGGACCAGGCCGATCCTCG-GCTTGCGCATTATGCCTCTCCGATCGGCTCAG
* * *
16056482 CGCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
16056514 GCATAGGGAGTTCATTCCATGTCTAAAC-CCTA-ATCGGACCGAGGGTTGTGGTAGCAGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACC-AGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * **
16056577 CAGCACGTAGAGGGGGATCAGGCCAAACCCCGGCTTGCGCATTATGCCT-TCCCGGCCTGG-TCA
65 TAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCT-CCGATC-GGCTCA
* * * * *
16056640 GTGCCCACACGCTCATTTTGTGGGATGACTTAG
128 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
16056673 GCATACGGAGTTCATTCCCAT-TCTAA-AATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
16056736 TAGTACACATGA--GGGACCGGGCCGTTCC-CTGGCTTACGCATTCTGCCTCTCCGATCGGCTGA
65 TAGCACGCA-GAGGGGGACCAGGCCGATCCTC-GGCTTGCGCATTATGCCTCTCCGATCGGCTCA
** *
16056798 GCGATCGCACGCTCATTTCATGGGTTGGCTTAG
128 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
** * * *
16056831 GCATACGGAGTTCATTCCATGTCTAAG-A-TTGAACCGAACCGAGGGTTGTGGTAGTAAGACCAG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAG-ATCGGACCGAGGG-T-T-G-CG---G--CAG
* ** * * ** * **
16056894 CAACAGGATCGATAGCACGTAG-GGGGGACTGGGTCGATCC-CTAGCTTATGCATTCTATCTCTC
56 ---CAGGATCGATAGCACGCAGAGGGGGACCAGGCCGATCCTC-GGCTTGCGCATTATGCCTCTC
* * * * * * *
16056957 CGGTCGGTTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAG
117 CGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * * *
16057001 GCATATGGAGTTCATTCCATGTCTAACCCCCAG-CCGGATCGAGGGTTGTGGCAG-TGAGACCAA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAG-GATCGA
* * * * ** * *
16057064 CAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCACC
65 TAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* *
16057129 TCCCGCACGCTCATTTCGTGGGTTGACTTAG
130 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * ** ** *
16057160 GCATGCAGAGTTCATTCTCAT-TCTAAG-ATCGGACCAGATTGAGGGTTGCGATAGTAGGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * ** * * *
16057223 CAGCACACAGGGGGGGATCAGGCCGATCCTCAGCTTGTGCATTCTATCTCTCTGGTCGGCTGAGC
65 TAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* * *
16057288 TCCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
16057319 GCATACGGAGTTCATTCCATGTTTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
16057348 TACGGAGTTC
Statistics
Matches: 896, Mismatches: 206, Indels: 96
0.75 0.17 0.08
Matches are distributed among these distances:
157 15 0.02
158 287 0.32
159 440 0.49
160 20 0.02
161 4 0.00
162 1 0.00
163 1 0.00
166 1 0.00
167 4 0.00
168 1 0.00
169 2 0.00
170 119 0.13
172 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAT
AGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCG
CCCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16056614 original size:317 final size:318
Alignment explanation
Indices: 16056039--16056856 Score: 1002
Period size: 317 Copynumber: 2.6 Consensus size: 318
16056029 CCCAGTCTAA
* ** * * * *
16056039 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * *
16056104 GCACGC-AGAGGGGACCAGGCCAATCCCCGA-CTTGCACATTCTGCCTCT-CTAGCTGGCTGAGC
66 GCACGCAAG-GGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGC
* * * *
16056166 ACCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCAAGC
* ** * * * * * * *
16056231 TGGACTGAGGGTTATGGCAGGGGGATCGATAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTT
194 TGGACCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCAAACCCCGGCTT
** * * * *
16056296 GCGCATTATGCCTTTTCGG-CTGGCTCAGTGCTCGCTCGCTCATTTCATGGGTTAACTTAG
259 GCGCATTATGCCTTCCCGGCCTGG-TCAGTGCCCACACGCTCATTTCATGGGATAACTTAG
* *
16056356 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
*
16056421 GCACGCAAGGGGGACCAAGCCGAT-CCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
66 GCACGCAAGGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
16056485 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAATC-
131 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCC-AAGCT
* * * *
16056549 GGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGTAGAGGGGGATCAGGCCAAACCCCGGCTTG
195 GGACCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCAAACCCCGGCTTG
** *
16056614 CGCATTATGCCTTCCCGGCCTGGTCAGTGCCCACACGCTCATTTTGTGGGATGACTTAG
260 CGCATTATGCCTTCCCGGCCTGGTCAGTGCCCACACGCTCATTTCATGGGATAACTTAG
* * * *
16056673 GCATACGGAGTTCATTCCCATTCTAAAATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * * * *
16056738 GTACACATGAGGGACCGGGCCGTTCCCTG-GCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGA
66 GCACGCAAGGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * *
16056802 TCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
16056857 GATTGAACCG
Statistics
Matches: 428, Mismatches: 67, Indels: 12
0.84 0.13 0.02
Matches are distributed among these distances:
316 4 0.01
317 409 0.96
318 15 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (318 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAAGGGGGACCAGGCCGATCCCTGAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCAAGCTG
GACCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCAAACCCCGGCTTGC
GCATTATGCCTTCCCGGCCTGGTCAGTGCCCACACGCTCATTTCATGGGATAACTTAG
Found at i:16057046 original size:487 final size:488
Alignment explanation
Indices: 16056410--16057345 Score: 1184
Period size: 487 Copynumber: 1.9 Consensus size: 488
16056400 GTTGCGGCAG
* *
16056410 CAGGATCGATAGCACGCAAGGGGGACCAAGCCGATCCTGAGCTTGCGCATTCTGCCTCTCCGATC
1 CAGGATCGATAGCACGCAAGGGGGACCAAGCCGATCCTGAGCTTACGCATTCTACCTCTCCGATC
* *
16056475 GGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * * *
16056540 ACCCTAATCGGACCGAGGGTTGTGGTAGCAG-GACCGACAGCACGTAGAGGGGGATCAGGCCAAA
131 ACCCCAACCGGACCGAGGGTTGTGGCAG-AGAGACCAACAGCACGCAGAGGGGGACCAGGCCAAA
* * * *
16056604 CCCCGGCTTGCGCATTATGCCT-TCCCGGCCTG-GTCA-GTGCCCACACGCTCATTTTGTGGGAT
195 CCCCAGCTTGCGCATTATGCCTCT-CCGGCC-GACTCACCT-CCCACACGCTCATTTCGTGGGAT
* * *
16056666 GACTTAGGCATACGGAGTTCATTCCCATTCTAAAATCAGATCGGACCGAGGGTTGCGACAGCAGG
257 GACTTAGGCATACAGAGTTCATTCCCATTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGG
* * * * * * *
16056731 ATCGATAGTACACA-TGAGGGACCGGGCCGTTCC-CTGGCTTACGCATTCTGCCTCTCCGATCGG
322 ATCGACAGCACACAGGGAGGGACCAGGCCGATCCTC-AGCTTACGCATTCTACCTCTCCGATCGG
*
16056794 CTGAGCGATCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
386 CTGAGCGACCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
16056859 TTGAACCGAACCGAGGGTTGTGGTAGTAAGACCAGCAA
451 TTGAACCGAACCGAGGGTTGTGGTAGTAAGACCAGCAA
* * *** * * * *
16056897 CAGGATCGATAGCACGTAGGGGGGACTGGGTCGATCCCT-AGCTTATGCATTCTATCTCTCCGGT
1 CAGGATCGATAGCACGCAAGGGGGACCAAGCCGAT-CCTGAGCTTACGCATTCTACCTCTCCGAT
* * *
16056961 CGGTTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
65 CGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * * * *
16057026 ACCCCCAGCCGGATCGAGGGTTGTGGCAGTGAGACCAACAGCACGCAGAGGGGGACCGGGCCGAT
130 AACCCCAACCGGACCGAGGGTTGTGGCAGAGAGACCAACAGCACGCAGAGGGGGACCAGGCCAAA
* *
16057091 CCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCACCTCCCGCACGCTCATTTCGTGGGTTGAC
195 CCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCACCTCCCACACGCTCATTTCGTGGGATGAC
* * * * ** * *
16057156 TTAGGCATGCAGAGTTCATTCTCATTCTAAGATCGGACCAGATTGAGGGTTGCGATAGTAGGATC
260 TTAGGCATACAGAGTTCATTCCCATTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATC
* * ** * * *
16057221 GACAGCACACAGGGGGGGATCAGGCCGATCCTCAGCTTGTGCATTCTATCTCTCTGGTCGGCTGA
325 GACAGCACACAGGGAGGGACCAGGCCGATCCTCAGCTTACGCATTCTACCTCTCCGATCGGCTGA
** * *
16057286 GCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAG
390 GCGACCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16057346 CATACGGAGT
Statistics
Matches: 377, Mismatches: 65, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
486 2 0.01
487 275 0.73
488 99 0.26
489 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (488 bp):
CAGGATCGATAGCACGCAAGGGGGACCAAGCCGATCCTGAGCTTACGCATTCTACCTCTCCGATC
GGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
ACCCCAACCGGACCGAGGGTTGTGGCAGAGAGACCAACAGCACGCAGAGGGGGACCAGGCCAAAC
CCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCACCTCCCACACGCTCATTTCGTGGGATGACT
TAGGCATACAGAGTTCATTCCCATTCTAAAATCAGACCAGACCGAGGGTTGCGACAGCAGGATCG
ACAGCACACAGGGAGGGACCAGGCCGATCCTCAGCTTACGCATTCTACCTCTCCGATCGGCTGAG
CGACCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGAA
CCGAACCGAGGGTTGTGGTAGTAAGACCAGCAA
Found at i:16057371 original size:26 final size:26
Alignment explanation
Indices: 16057319--16057371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16057309 GTTGGCTTAG
*
16057319 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16057345 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
16057371 G
1 G
16057372 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16057730 original size:26 final size:26
Alignment explanation
Indices: 16057700--16057752 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16057690 GTTGACTTAG
16057700 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
16057726 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16057752 G
1 G
16057753 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16059108 original size:318 final size:317
Alignment explanation
Indices: 16058524--16059367 Score: 830
Period size: 318 Copynumber: 2.7 Consensus size: 317
16058514 CCCAATCTAA
* ** * * * * *
16058524 GCATACGAAGTTCATTCCCTGTCTAAGATCAGACCAGGCCGAA-GGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACGA-GACTAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
16058588 AGCATGC-AGGGGGGACCGA-ACTGATCCCC-AGCTTGTGCATTCTGCCTCTCCGA-CTGCCTAA
65 AACACGCAAGGGGCGATCGAGTC-GATCCCCAAGC-TATGCATTCTACCTCTCCGACCAG-CTGA
* * * * * * *
16058649 GTGCCAGCACACCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCTATGTCTAAGCCCTA
127 GCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
* * * *
16058714 GCTGGACTGAGGGTTGTGCTAGTGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGG
192 GCAGGACTGAGGGTTGTGCTAGTAGGACCGGCAGCACGCAAAGGGGGATCGGGCCGATCCCCACG
** **** *
16058779 TTGCACATTATGCCTTTCCGGTTGGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAG
257 TTG-ACATTATGCCTCCCCAACCGGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
* * * *
16058841 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGTAGGATTGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGA-CGAGACTAAGGGTTGCGGCAGCAGGATCGAC
* ***
16058905 AACACGTGAAGGGG-GAAT-GAGTCGAT-CCGTGGCT-TGCACATTCTACCTCTCCGACCAGCTG
65 AACACG-CAAGGGGCG-ATCGAGTCGATCCCCAAGCTATG--CATTCTACCTCTCCGACCAGCTG
* * *
16058966 AGCG-CTCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCC
126 AGCGCCT-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCC
* * * * *
16059030 CAGCAGGATTGAGGGTTGTGGTAGTAGGACTGGCAGCATGCAAAGGGGGATCGGGCTGATCCCCG
190 CAGCAGGACTGAGGGTTGTGCTAGTAGGACCGGCAGCACGCAAAGGGGGATCGGGCCGATCCCC-
* * ** * *
16059095 ACTTATG-CATTATGCCTCCCCAACCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
254 ACGT-TGACATTATGCCTCCCCAACCGGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
* * * *
16059159 GCATGCGGAGTTCATTCCCAATCTAAGATCGGACTAGACTAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACGAGACTAAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
16059224 GCACGCATGGGGCGATCGGGTCGATCCCCAAGTTATGCATTTTACCTCTTCGACCGGCTGAGCGC
66 ACACGCAAGGGGCGATCGAGTCGATCCCCAAGCTATGCATTCTACCTCTCCGACCAGCTGAGCGC
* * * *
16059289 CTGCACGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
131 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCAG
*
16059354 GACCGAGGGTTGTG
196 GACTGAGGGTTGTG
16059368 ACAGCAGGAC
Statistics
Matches: 431, Mismatches: 77, Indels: 37
0.79 0.14 0.07
Matches are distributed among these distances:
316 4 0.01
317 67 0.16
318 339 0.79
319 17 0.04
320 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACGAGACTAAGGGTTGCGGCAGCAGGATCGACA
ACACGCAAGGGGCGATCGAGTCGATCCCCAAGCTATGCATTCTACCTCTCCGACCAGCTGAGCGC
CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCAG
GACTGAGGGTTGTGCTAGTAGGACCGGCAGCACGCAAAGGGGGATCGGGCCGATCCCCACGTTGA
CATTATGCCTCCCCAACCGGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
Found at i:16059343 original size:159 final size:158
Alignment explanation
Indices: 16058567--16059385 Score: 449
Period size: 159 Copynumber: 5.2 Consensus size: 158
16058557 CCAGGCCGAA
* * * * ** * * *
16058567 GGTTGCGGTAGTAGGA-TCGACAGCATGC-AGGGGGGACCGAACTGATCCCCAGCTTGTGCATTC
1 GGTTGCGGTAGCAGGACT-GACAGCACGCAAAGGGGGATCGGGCTGATCCCCAACTTATGCATTA
* * * * * * * * * **
16058630 TGCCTCTCCGACTGCCTAAGTGCCAGCACACCCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTC
65 TACCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTC
* * * * *
16058695 ATTCTATGTCTAAGCCCTAGCTGGACTGAG
129 ATTCCATATCTAAGCCCCAGCAGGACTAAG
* * ** * * * * ** ***
16058725 GGTTGTGCTAGTGGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGGTTGCACATTAT
1 GGTTGCGGTAGCAGGACTGACAGCACGCAAAGGGGGATCGGGCTGATCCCCAACTTATGCATTAT
* * *** * * ** * * *
16058790 GCCTTTCCGGTTGGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
66 ACCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCA
* ** * * *
16058855 TTCCCA-GTCTAAG-ATCAGACCGAACTGAG
130 TT-CCATATCTAAGCCCCAG-CAGGACTAAG
* * * * ** * **** ***
16058884 GGTTGCGGCAGTAGGATTGACAACACGTGAAGGGGGAAT-GAG-TCGATCCGTGGCTTGCACATT
1 GGTTGCGGTAGCAGGACTGACAGCACGCAAAGGGGG-ATCGGGCT-GATCCCCAACTTATGCATT
* * * * *
16058947 CTACCTCTCCGACCAGCTGAGCG-CTCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
64 ATACCTCTCCGACCGGCTGAGCGCCT-GCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGT
* * *
16059011 TCATTCCATCTCTAAGCCCCAGCAGGATTGAG
127 TCATTCCATATCTAAGCCCCAGCAGGACTAAG
* * * * *
16059043 GGTTGTGGTAGTAGGACTGGCAGCATGCAAAGGGGGATCGGGCTGATCCCCGACTTATGCATTAT
1 GGTTGCGGTAGCAGGACTGACAGCACGCAAAGGGGGATCGGGCTGATCCCCAACTTATGCATTAT
* * * * * * *
16059108 GCCTCCCCAACCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCA
66 ACCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCA
** *
16059173 TTCCCA-ATCTAAG-ATCGGACTA-GACTAAG
130 TT-CCATATCTAAGCCCCAG-C-AGGACTAAG
* *
16059202 GGTTGCGGTAGCAGGA-TCGACAGCACGC-ATGGGGCGATCGGG-TCGATCCCCAAGTTATGCAT
1 GGTTGCGGTAGCAGGACT-GACAGCACGCAAAGGGG-GATCGGGCT-GATCCCCAACTTATGCAT
* *
16059264 TTTACCTCTTCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGT
63 TATACCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGT
* * **
16059329 TCATTCCATGTCTAAGCCCCAGCCGGACCGAG
127 TCATTCCATATCTAAGCCCCAGCAGGACTAAG
* ** *
16059361 GGTTGTGACAGCAGGACTGATAGCA
1 GGTTGCGGTAGCAGGACTGACAGCA
16059386 GGATCGATAG
Statistics
Matches: 504, Mismatches: 131, Indels: 51
0.73 0.19 0.07
Matches are distributed among these distances:
158 43 0.09
159 443 0.88
160 18 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GGTTGCGGTAGCAGGACTGACAGCACGCAAAGGGGGATCGGGCTGATCCCCAACTTATGCATTAT
ACCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCAT
TCCATATCTAAGCCCCAGCAGGACTAAG
Found at i:16059874 original size:26 final size:26
Alignment explanation
Indices: 16059845--16059894 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16059835 GGTTTAGGCG
*
16059845 TACGGAGTTTATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
16059871 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16059895 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:16061753 original size:159 final size:158
Alignment explanation
Indices: 16061501--16061788 Score: 364
Period size: 159 Copynumber: 1.8 Consensus size: 158
16061491 GCGACAGCAA
** * *
16061501 GATCGGCAGCACGTAGGGGGGACCGGGCTGACCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGC
1 GATCGGCAGCACACAGGGGGGACCGGGCTGACCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGC
* * * * *
16061566 TGAGCACCCACACGGCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCC
66 TCAGCACCCACACGGCCATTTCATGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCC
16061631 CCAGCTGGACCGAGGGTTGTGGTAGCGG
131 CCAGCTGGACCGAGGGTTGTGGTAGCGG
* * * *
16061659 GATCGGCAGCACACAGAGGGGGATCGGG-TCGATCCTCGGCTTGCTCATTATGCCTCTCCGGCCG
1 GATCGGCAGCACACAG-GGGGGACCGGGCT-GACCCCCGGCTTGCGCATTATGCCTCTCCGGCCG
* * * * * *
16061723 GTTCAGCGCCTACAC-GCTCGTTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATTTCTAA
64 GCTCAGCACCCACACGGC-CATTTCATGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAA
16061787 GC
128 GC
16061789 ATACGGAGTT
Statistics
Matches: 108, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
158 17 0.16
159 91 0.84
ACGTcount: A:0.16, C:0.29, G:0.32, T:0.24
Consensus pattern (158 bp):
GATCGGCAGCACACAGGGGGGACCGGGCTGACCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGC
TCAGCACCCACACGGCCATTTCATGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCC
CCAGCTGGACCGAGGGTTGTGGTAGCGG
Found at i:16061811 original size:26 final size:26
Alignment explanation
Indices: 16061761--16061813 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16061751 GTTGGCTTAG
*
16061761 GCATACGGACTTCATTCCATTTCTAA
1 GCATACGGACTTCATTCCATGTCTAA
*
16061787 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGACTTCATT-CCATGTCTAA
16061813 G
1 G
16061814 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCATGTCTAA
Found at i:16061814 original size:343 final size:350
Alignment explanation
Indices: 16060967--16061815 Score: 869
Period size: 354 Copynumber: 2.4 Consensus size: 350
16060957 AGCACGCAAG
* * * * * * * *
16060967 GGGGGATAGGGTTGATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGGTTGAGCG-CTCGCACAC
1 GGGGGATCGGGTCGATCCCCGGCTTGCTCATTATGCCTCTCCGGCCGGTTGAGCGCCT-GCACGC
* * * * *
16061031 TCATTTCGTTGATTGGCTTAGGCAAATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCC
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCC
* * *
16061096 CATTGTAAGATCAGATTGGACCGAGGGTTGCGGTAGTAGGACCAGCAGCAAGATCGACAACACAT
130 CAGTCTAAGATCAGATTGGACCAAGGGTTGC-------GG--CAGCAGCAAGATCGACAACACAT
* * * * * * *
16061161 AGGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGGCTCTCTGACCTGCTGAGCGCCCGCACG
186 AGGGGGGACCGGGCCGACCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACG
* *
16061226 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAG
251 CTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAG
16061291 GTTGTGGCAGCGAGATCGGCAATGGGATCGACAGCATGCAGA
316 GTTGTGGCAGCGAGATCGGC-----GA-CGACAGCA-GCAGA
* * * * * * * *
16061333 GGGGGATCAGG-CTGATCCCCGGCTCG-TGCATTATGCCTCTCCGACCAGCTGAGCACCCGTACG
1 GGGGGATCGGGTC-GATCCCCGGCTTGCT-CATTATGCCTCTCCGGCCGGTTGAGCGCCTGCACG
* * * * *
16061396 CTCGTTTCTTGGGTTGACTTAGGCGTACGGAGTTCATCCCCA-GTCTAAGCATACAAAGTTCATT
64 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATT
* * * * *
16061460 CCCAGTCTAAGATCGGATTGGATCAAGGGTTGC-G-A-CAGCAAGATCGGCAGCACGTAGGGGGG
128 CCCAGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAGCAGCAAGATCGACAACACATAGGGGGG
* **
16061522 ACCGGGCTGACCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGGC-CATT
193 ACCGGGCCGACCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACAC-GCTCATT
* ** * * *
16061586 TTATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGT
257 TCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGA-GGTTGT
* *
16061651 GGTAGCGGGATCGGC-A-G-CA-CA-CAGA
321 GGCAGCGAGATCGGCGACGACAGCAGCAGA
* * *
16061676 GGGGGATCGGGTCGATCCTCGGCTTGCTCATTATGCCTCTCCGGCCGGTTCAGCGCCTACACGCT
1 GGGGGATCGGGTCGATCCCCGGCTTGCTCATTATGCCTCTCCGGCCGGTTGAGCGCCTGCACGCT
* * *
16061741 CGTTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATTTCTAAGCATACGGAGTTCATTCCC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCC
16061806 AGTCTAAGAT
131 AGTCTAAGAT
16061816 TTTGAGCCAC
Statistics
Matches: 401, Mismatches: 73, Indels: 41
0.78 0.14 0.08
Matches are distributed among these distances:
342 3 0.01
343 117 0.29
344 2 0.00
345 2 0.00
346 2 0.00
347 1 0.00
349 1 0.00
354 125 0.31
355 22 0.05
358 1 0.00
366 121 0.30
367 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (350 bp):
GGGGGATCGGGTCGATCCCCGGCTTGCTCATTATGCCTCTCCGGCCGGTTGAGCGCCTGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCC
AGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAGCAGCAAGATCGACAACACATAGGGGGGACC
GGGCCGACCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCTCATTTCAT
GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGTTGTGGCAG
CGAGATCGGCGACGACAGCAGCAGA
Found at i:16062413 original size:26 final size:26
Alignment explanation
Indices: 16062382--16062435 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16062372 TGGGTTGACT
*
16062382 TAGGCATAC-GAAGTTCATCCCCAGTC
1 TAGGCATACAG-AGTTCATCCCCAATC
*
16062408 TAGGCATACAGAGTTCATTCCCAATC
1 TAGGCATACAGAGTTCATCCCCAATC
16062434 TA
1 TA
16062436 AGATCAGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAATC
Found at i:16062544 original size:26 final size:26
Alignment explanation
Indices: 16062508--16062563 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16062498 ATCTCTGGCT
16062508 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
16062534 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16062560 TAAG
1 TAAG
16062564 ATCAGAGTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16062924 original size:26 final size:26
Alignment explanation
Indices: 16062892--16062944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16062882 GTGGACTTAG
16062892 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16062918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16062944 G
1 G
16062945 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16063397 original size:158 final size:157
Alignment explanation
Indices: 16062918--16063727 Score: 615
Period size: 158 Copynumber: 5.1 Consensus size: 157
16062908 CCCAGTCTAA
* * * * * * * **
16062918 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGTTTACGACAGCACGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
16062983 GTACGTAGGGGGGACTAGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACC
66 GCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAT-GGCTGAGCGCC
* * * * ** *
16063048 TGCATGCCCATTTTGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGACTTAG
* ** ** ** * *
16063076 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * ** * * *
16063139 CAGCACGCAGAGGGGGA-TCGGGCCGATCCTCGGCTTATGCATTATGCCTCTTCGACCGGCTCAG
64 CAGCACGCAG-GGGGGACT-AGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-TGGCTGAG
** * * * *
16063203 CGCCCATACACTCATTTCATTGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
16063235 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCACCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
16063300 GTATGCTGGGGGGACTAGACCGATCCCCGGCTTGTGCATTTTGCCTCTCCAGCTGGATGAGCGCC
66 GCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GATGGCTGAGCGCC
* * *
16063365 CGTACGC-CTGTTTCGTGGGTTGGCTTAG
130 CGCACGCTC-GTTTCATGGGTTGACTTAG
* * ** * ** * *
16063393 GCATAGGGAGTTCATT-GCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGGGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACTGGACCGAGGGTTGCGGCAGCAGGATCGA
* ** * * *
16063456 CAGCACGCAGAGGGGGACCAGGCCGATCCCCTACTTGCGCATTATGCCTTTCCCGTTGGCTCAGC
64 CAGCACGCAG-GGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCT-CCGATGGCTGAGC
* *
16063521 GCCCGCACGGTCATTTCATGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * * * *
16063552 GCATACGGAGTTCATTCCTAGTCTAAGATCATACCAGACCAAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
16063617 GCACGCAAGGAGGACTGGGCCGATCTCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCC
66 GCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAT-GGCTGAGCGCC
* *
16063682 CGCACGCTCGTTTCCTGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGACTTAG
16063710 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16063728 ATGTCTACGC
Statistics
Matches: 504, Mismatches: 130, Indels: 36
0.75 0.19 0.05
Matches are distributed among these distances:
157 10 0.02
158 251 0.50
159 236 0.47
160 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:16063500 original size:317 final size:314
Alignment explanation
Indices: 16062918--16063734 Score: 949
Period size: 317 Copynumber: 2.6 Consensus size: 314
16062908 CCCAGTCTAA
* * * * * *
16062918 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGTTTACGACAGCACGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCGATA
* * * *
16062983 GTACG-TAGGGGGGACTAGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCAC
65 GTACGCT-GGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * ** *
16063047 CTGCATGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
129 CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
16063112 GACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTAT
194 GACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTAC
* * *
16063177 GCATTATGCCTCTTCGACC-GGCTCAGCGCCCATACACTCATTTCATTGGTTGACTTAT
259 GCATTATGCCT-TTC--CCTGGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
* * *
16063235 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCACCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGATA
* * ** * * *
16063300 GTATGCTGGGGGGACTAGACCGATCCCCGGCTTGTGCATTTTGCCTCTCC-AGCTGGATGAGCGC
65 GTACGCTGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATC-GGCTGAGCGC
* * * **
16063364 CCGTACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCTG
129 CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
16063429 GACCGAGGGTTGTGGCAGGGGGACCGGCAGCACGCAGAGGGGGACCAGGCCGATCCCCTACTTGC
194 GACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTAC
* **
16063494 GCATTATGCCTTTCCCGTTGGCTCAGCGCCCGCACGGTCATTTCATGGGTTGACTTAG
259 GCATTATGCCTTTCCC--TGGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
* * * * * *
16063552 GCATACGGAGTTCATTCCTAGTCTAAGATCATACCAGACCAAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGATA
* ** * * * * *
16063617 GCACGCAAGGAGGACTGGGCCGATCTCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCC
65 GTACGCTGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
16063682 CGCACG-CTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
130 CGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
16063735 CGCATACGGA
Statistics
Matches: 417, Mismatches: 75, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
314 2 0.00
316 7 0.02
317 404 0.97
318 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCGATAG
TACGCTGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGC
ATTATGCCTTTCCCTGGCTCAGCGCCCACACACTCATTTCATGGGTTGACTTAG
Found at i:16063734 original size:158 final size:159
Alignment explanation
Indices: 16062991--16063734 Score: 614
Period size: 159 Copynumber: 4.7 Consensus size: 159
16062981 TAGTACGTAG
* * * * * *
16062991 GGGGGACTAGGTCGAT-CCTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCTGCATGC
1 GGGGGACTAGGCCGATCCCT-GGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGC
* ** * * *
16063055 CCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-GCCAGACCGAG
65 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCATACCAGACCGAG
** *
16063119 GGTTATGGCAGCGGGACCGACAGCACGCAGA
129 GGTTGCGGCAGCAGGACCGACAGCACGCAGA
* * * * * ** *
16063150 GGGGGA-TCGGGCCGAT-CCTCGGCTTATGCATTATGCCTCTTCGACCGGCTCAGCGCCCATACA
1 GGGGGACT-AGGCCGATCCCT-GGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACG
* * * * * **
16063213 CTCATTTCATTGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGA
64 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCATACCAGACCGA
* * * * * *
16063277 GGGTTGCAGCACCAGGATCGACAGTATGCTG-
128 GGGTTGCGGCAGCAGGACCGACAGCACGCAGA
* * ** * * * *
16063308 GGGGGACTAGACCGATCCCCGGCTTGTGCATTTTGCCTCTCC-AGCTGGATGAGCGCCCGTACGC
1 GGGGGACTAGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGATC-GGCTGAGCGCCCGCACGC
* * * * * **
16063372 -CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAG-CCCTAGCTGGACCGA
65 TC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCATA-CCAGACCGA
* ** *
16063435 GGGTTGTGGCAGGGGGACCGGCAGCACGCAGA
128 GGGTTGCGGCAGCAGGACCGACAGCACGCAGA
* * * * * *
16063467 GGGGGACCAGGCCGATCCCCT-ACTTGCGCATTATGCCTTTCCCG-TTGGCTCAGCGCCCGCACG
1 GGGGGACTAGGCCGAT-CCCTGGCTTACGCATTATGCCTCT-CCGATCGGCTGAGCGCCCGCACG
* * * *
16063530 GTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCATACCAGACCAA
64 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCATACCAGACCGA
* * * *
16063594 GGGTTGCGGTAGTAGGATCGATAGCACGCA-A
128 GGGTTGCGGCAGCAGGACCGACAGCACGCAGA
* * * * *
16063625 GGAGGACTGGGCCGATCTCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCT
1 GGGGGACTAGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCT
* *
16063690 CGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
16063735 CGCATACGGA
Statistics
Matches: 455, Mismatches: 111, Indels: 39
0.75 0.18 0.06
Matches are distributed among these distances:
157 13 0.03
158 201 0.44
159 229 0.50
160 12 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GGGGGACTAGGCCGATCCCTGGCTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCATACCAGACCGAGGG
TTGCGGCAGCAGGACCGACAGCACGCAGA
Found at i:16063759 original size:26 final size:26
Alignment explanation
Indices: 16063710--16063760 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16063700 GTTGGCTTAG
*
16063710 GCATACGGAGTTCATTCCATGTCTAC
1 GCATACGGAGTTCATCCCATGTCTAC
16063736 GCATACGGAGTTCACTCCCA-GTCTA
1 GCATACGGAGTTCA-TCCCATGTCTA
16063761 AGATCGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAC
Done.