Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 132 of 402
Found at i:16064431 original size:159 final size:159
Alignment explanation
Indices: 16064186--16064918 Score: 604
Period size: 159 Copynumber: 4.6 Consensus size: 159
16064176 TAGACTAGGT
* * * * * * * * *
16064186 TGATCCCTGACTTTCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGTACGCCTGTTTCGTGGGT
1 TGATCCCTGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCCTGTTTCATGGGT
* * * * *
16064251 TGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAATCGGACCAAGGGTTGTGGCAGCGG
66 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGG
* * *
16064316 GACCGACAGCTCGTAGAGGGGGATCGGGC
131 GACCGACAGCACGCAGAGGGGGACCGGGC
* * * * ** *
16064345 TGATCCCTGGCTTACACATTATGCCTCTTCGGCCGGCTCAATGCCCGCACGCTTGTTTCATGGGT
1 TGATCCCTGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCCTGTTTCATGGGT
* ** * **
16064410 TGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCAGCAGC
66 TGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGC
* * *
16064473 AGGATCGACAGCACGCAG-GGGGGACCGAGC
129 GGGACCGACAGCACGCAGAGGGGGACCGGGC
** * * * * *
16064503 CAAT-CCTCGACTTACGCATTCTGCCTCTCCGACCGAATGAGCGCCTGCACGCCTGTTTCATGGG
1 TGATCCCT-GACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCCTGTTTCATGGG
* * * * * *
16064567 TTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGCG
65 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCG
** *
16064632 GGACCGGTAGCACGCAGAGGGGGACCAGGC
130 GGACCGACAGCACGCAGAGGGGGACCGGGC
** * ** * *
16064662 TGATCCCCAACTTGCGCATTATGCCTCTCCGGATGACTCAGCGCTCGTACG-CTCGTTTCATGGG
1 TGATCCCTGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCCT-GTTTCATGGG
** * ** * * *
16064726 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTAGACTGAGGGTTGCGGTAGC
65 TTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGC
* * * **
16064790 AGGATCGATAGCACGCA-AGGGGGGAATGGG-
129 GGGACCGACAGCACGCAGA-GGGGGACCGGGC
* * * * * * * *
16064820 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACG-CTCGTTTCCTGG
1 T-GATCCCTGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCCT-GTTTCATGG
* **
16064884 GTTGGCTTA-GCATACGGAGTTCATTTAATGTCTAA
64 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
16064919 ACATACGGAG
Statistics
Matches: 454, Mismatches: 108, Indels: 25
0.77 0.18 0.04
Matches are distributed among these distances:
157 6 0.01
158 145 0.32
159 296 0.65
160 7 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
TGATCCCTGACTTACGCATTATGCCTCTCCGGCCGACTCAGCGCCCGCACGCCTGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGG
GACCGACAGCACGCAGAGGGGGACCGGGC
Found at i:16064684 original size:317 final size:318
Alignment explanation
Indices: 16064188--16064918 Score: 903
Period size: 317 Copynumber: 2.3 Consensus size: 318
16064178 GACTAGGTTG
* * * * * ** * * *
16064188 ATCCCTGACTTTCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGTACGCCTGTTTCGTGGGTTG
1 ATCCCCGACTTACGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACGCCTGTTTCATGGGTTG
* *
16064253 GCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAATCGGACCAAGGGTTGTGGCAGCGGGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGGA
* * * * *** * * *
16064318 CCGACAGCTCGTAGAGGGGGATCGGGCTGATCCCTGGCTTACACATTATGCCTCTTCGGCCGGCT
131 CCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCAACTTACACATTATGCCTCTCCGGACGACT
* * *
16064383 CAATGCCCGCACGCTTGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATC
196 CAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
16064448 AGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGC-AGGGGGGACCGAGCCA
261 AAACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGGGGGAACGAGCCA
* *
16064505 ATCCTCGACTTACGCATTCTGCCTCTCCGACCGAA-TGAGCGCCTGCACGCCTGTTTCATGGGTT
1 ATCCCCGACTTACGCATTCTGCCTCTCCGACC-AACTGAGCGCCCGCACGCCTGTTTCATGGGTT
* * * **
16064569 GGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGCGGG
65 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGG
** * * *
16064634 ACCGGTAGCACGCAGAGGGGGACCAGGCTGATCCCCAACTTGCGCATTATGCCTCTCCGGATGAC
130 ACCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCAACTTACACATTATGCCTCTCCGGACGAC
* * *
16064699 TCAGCGCTCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
195 TCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
16064764 CAAACTAGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCAAGGGGGGAATGGGTCG
260 CAAACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGGGGGAACGAGCCA
* * *
16064823 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACG-CTCGTTTCCTGGGTT
1 ATCCCCGACTTACGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACGCCT-GTTTCATGGGTT
* **
16064887 GGCTTA-GCATACGGAGTTCATTTAATGTCTAA
65 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
16064919 ACATACGGAG
Statistics
Matches: 351, Mismatches: 59, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
317 281 0.80
318 70 0.20
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (318 bp):
ATCCCCGACTTACGCATTCTGCCTCTCCGACCAACTGAGCGCCCGCACGCCTGTTTCATGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGGA
CCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCAACTTACACATTATGCCTCTCCGGACGACT
CAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AAACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGGGGGGAACGAGCCA
Found at i:16065289 original size:26 final size:26
Alignment explanation
Indices: 16065259--16065311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16065249 GTTGACTTAG
*
16065259 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16065285 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16065311 G
1 G
16065312 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16065488 original size:354 final size:345
Alignment explanation
Indices: 16064717--16065627 Score: 855
Period size: 342 Copynumber: 2.6 Consensus size: 345
16064707 CGTACGCTCG
* ** ** * *
16064717 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAAACTAGACTGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTC-GGACAGAGGG
* * ** * ** * ** *
16064780 TTGCGGTAGCAGGATCGATAGCACGCA-AGGGGGGAATGGGTCGATCCCCGGCTTGCGCATTCTG
64 TTGTGGCAGTGGGATCGACAGCACGCAGA-GGGGGACCGGGCCGATCCTTGGCTTGCGCATTATG
** * * *
16064844 CCTCTCCGACCAACTGAGCGCCCGCACGCTCGTTTCCTGGGTTGGCTTAGCATACGGAGTTCAT-
128 CCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCATACGGAGTTCATC
* * *
16064908 -TTAATGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACA
193 CCT-A-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT--AAC-
* * **
16064972 GTAGGACCAGCAACAGGATCGACAGCATGCAGAGGGACTGGGTTGATCGTCGGCTTACGTATTCT
253 --AGGA-CAG--ACAGGATCGACAGCATGCAGAGGGACTAGGCTGATCGTCGGCTTACACATTCT
* *
16065037 GCCTCTCCGGCCGACTGAGTGCCCGCGCACTCA
313 ACCTCTCCGGCCGACTGAGTGACCGCGCACTCA
* *
16065070 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTT
*
16065135 GTGGCAGCAGGACCGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCTTGGCTTG
66 GT------------GGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTG
*
16065200 CGCATTATGCCTCTCCGGTCGGA-TGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATA
119 CGCATTATGCCTCTCCGGTC-GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA-GCATA
* *
16065264 CGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGG
182 CGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * *
16065329 GTT-AC-GG-CAG-TAGGATCGACAGCATGCAGGGGGGA-TCAGGCTGAT-TTCTGGCTTGCACA
247 GTTAACAGGACAGACAGGATCGACAGCATGCA-GAGGGACT-AGGCTGATCGTC-GGCTTACACA
* * *
16065388 TTCTACCTC-CCTGGCCGGCTGAGTGATCTCTGC-C-CA
309 TTCTACCTCTCC-GGCCGACTGAGTGACCGC-GCACTCA
* * * *
16065424 TTTCGTTGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTT
* * *
16065489 GTGGCAGTGGGATCGACAGCATGCAGAGGGGGACGGGGCCGATCCTTGACTTGCGCATTATGCCT
66 GTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCT
* * * * * * * **
16065554 CTTCGATCGACTCAGTGCCCGCACGCTTGTTTCGTGAGTTGACTTATGCATATAGAGTTCATTCC
131 CTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA-GCATACGGAGTTCA-TCC
16065619 C-AGTCTAAG
194 CTAGTCTAAG
16065628 ATCAGACCGG
Statistics
Matches: 468, Mismatches: 64, Indels: 63
0.79 0.11 0.11
Matches are distributed among these distances:
341 2 0.00
342 114 0.24
343 4 0.01
352 3 0.01
353 52 0.11
354 87 0.19
355 41 0.09
356 2 0.00
357 3 0.01
359 2 0.00
363 2 0.00
365 88 0.19
366 66 0.14
367 1 0.00
368 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (345 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTT
GTGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCT
CTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCATACGGAGTTCATCCCT
AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAACAGGACAGA
CAGGATCGACAGCATGCAGAGGGACTAGGCTGATCGTCGGCTTACACATTCTACCTCTCCGGCCG
ACTGAGTGACCGCGCACTCA
Found at i:16073246 original size:26 final size:26
Alignment explanation
Indices: 16073210--16073262 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16073200 GTTGACTTAG
* *
16073210 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16073236 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16073262 G
1 G
16073263 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16073544 original size:159 final size:158
Alignment explanation
Indices: 16073236--16073723 Score: 450
Period size: 159 Copynumber: 3.1 Consensus size: 158
16073226 CCCAGTCTAA
* * * * * * *
16073236 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-CTGAACCGAGGGTTGCGATAACAGGATCGAC
1 GCATACGGAGTTCAGTCCCAATCTAAGATCAGATC-GAACCAAGGGTTGTGGTAGCAGGACCGAC
* * ** * *
16073300 AGCATGCAG-GGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTACGACTGGCTGAGCA
65 AGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTTAGC-
* * * *
16073364 CCCGCACGCCCATTTTGTGGGTTGGCTTAG
129 GCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ***** * *
16073394 GCATAGGGAGTTCAGT-CCATGTCTAAGCCTCAG-TTGGGTTGAGGGTTGTGGTAGTAGGACCGG
1 GCATACGGAGTTCAGTCCCA-ATCTAAG-ATCAGATCGAACCAAGGGTTGTGGTAGCAGGACCGA
* * * *
16073457 TAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCCCTCCGA-TCGGCTTAG
64 CAGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTTAG
* *
16073521 CGCCTGCACGCTCGTTTCATGGGTTGACTTAG
128 CGCC-GCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** *
16073553 GCATATAGAGTTCATTCCCAATCTAAGATTGGATCGAACCAAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCAGTCCCAATCTAAGATCAGATCGAACCAAGGGTTGTGGTAGCAGGACCGACA
* * * *
16073618 GCACGCAGGGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGG-TTGAGCG
66 GCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTT-AGCG
* *
16073682 CC-CGCGCTTGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
16073710 GCATACGGAGTTCA
1 GCATACGGAGTTCA
16073724 TTCTTTGTAT
Statistics
Matches: 258, Mismatches: 62, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 37 0.14
158 53 0.21
159 164 0.64
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCAGTCCCAATCTAAGATCAGATCGAACCAAGGGTTGTGGTAGCAGGACCGACA
GCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTTAGCGC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16073762 original size:26 final size:26
Alignment explanation
Indices: 16073710--16073762 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16073700 GTTGGCTTAG
***
16073710 GCATACGGAGTTCATTCTTTGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
16073736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
16073762 G
1 G
16073763 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:16074885 original size:152 final size:153
Alignment explanation
Indices: 16074522--16074904 Score: 400
Period size: 152 Copynumber: 2.5 Consensus size: 153
16074512 TACGCAGAAG
* * * * * * * *
16074522 GGACCAGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCCCAT
1 GGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACGCCCGT
* *
16074587 TTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAACCACAGCCGAACCATGGGTTG
66 TTC----G-TGGC-TAGGCATAGGGAGTTCATTCCATGCCTAAACCACAGCCGAACCATGGGTTG
* *
16074652 TGGCAGCGGGACCGACAGCGCGCAGTGGG
125 TGGCAGCGGGACCGACAGCACGCAGTGGA
* * * *
16074681 GGATCGGGCAGATCCCCGGCTTGCGCATTATGCCTCT-CTAGCCGG-TAAAGCGCCCGCACGCCC
1 GGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CCGGCT-AAGCGCCCGCACGCCC
* *
16074744 GTTTCGTGG-TAGGCATAGGGAGTTCATTCCATGCCTAAGCCGCAGCC-AAGCCGA-GGGTTGTG
64 GTTTCGTGGCTAGGCATAGGGAGTTCATTCCATGCCTAAACCACAGCCGAA-CC-ATGGGTTGTG
* *
16074806 GCAGCGGGACC-ATTAGCACGTAGTGGA
127 GCAGCGGGACCGA-CAGCACGCAGTGGA
* * * * *
16074833 GGACCACGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCTCGCATGCTCGT
1 GGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACGCCCGT
16074898 TTCGTGG
66 TTCGTGG
16074905 GTTGACTTAG
Statistics
Matches: 188, Mismatches: 29, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
151 3 0.02
152 123 0.65
153 4 0.02
154 3 0.02
155 1 0.01
158 2 0.01
159 52 0.28
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (153 bp):
GGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACGCCCGT
TTCGTGGCTAGGCATAGGGAGTTCATTCCATGCCTAAACCACAGCCGAACCATGGGTTGTGGCAG
CGGGACCGACAGCACGCAGTGGA
Found at i:16076332 original size:26 final size:26
Alignment explanation
Indices: 16076296--16076348 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16076286 GTTGGCTTAG
16076296 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
16076322 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
16076348 G
1 G
16076349 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:16076871 original size:26 final size:26
Alignment explanation
Indices: 16076821--16076873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16076811 GTTGGCTTAG
*
16076821 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16076847 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16076873 G
1 G
16076874 AGTTTCAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16077573 original size:26 final size:26
Alignment explanation
Indices: 16077543--16077595 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16077533 GTTGACTTAG
**
16077543 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16077569 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16077595 G
1 G
16077596 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16078133 original size:158 final size:157
Alignment explanation
Indices: 16077569--16078534 Score: 551
Period size: 158 Copynumber: 6.1 Consensus size: 157
16077559 CCCAGTCTAA
* * * ** * *
16077569 GCATAC-GAAGTTCTTTCCCAGTCTAAGATCGGATCGGTTCGAGGGTTACGACAGCAGGATCGAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGAGTTGCGACAG-AGGATCGAC
* * * * * * * * * * * *
16077633 AACACGCAGAGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGC
64 AGCACGTAGGGGGGATCGGGTCGATCCCTGACTTACGCATTCTGCCTCTTCGGTCGGCTCAGCGC
* * * * *
16077698 CCACACG-TCCGTTTCATTGGTTGGCTTAG
129 CCGCACGCT-CATTTCGTGGGTTGACTTAG
** * ** * * * * * * *
16077727 GCATAGGGAATTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTGGGACCCA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGAGTTGCGACAG-AGGATCGA
* * * * * * *
16077790 CAGCATGCAGAGGGGGATCGGG-CTGATCCCCGACTTACGCATTATGCCTC-TCCGACTAGCTCA
63 CAGCACGTAG-GGGGGATCGGGTC-GATCCCTGACTTACGCATTCTGCCTCTTCGGTC-GGCTCA
* * * * * *
16077853 GTGCCTGAACGCTCGTTTCATGGGTTGACTTAC
125 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
16077886 GCATACTGAGTTCTTTCCCAATCTAAGATCAGA-CCGAACCGAGGGTTGCAACAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACCGAGAGTTGCGACAG-AGGATCGAC
* * * * * ** *
16077950 AGCACGTAGCGGGGACCAGGCCGATCCCTGGCTTACAG-ATTCTGCCTCTTCGACCGGTTCAGCG
64 AGCACGTAGGGGGGATCGGGTCGATCCCTGACTTAC-GCATTCTGCCTCTTCGGTCGGCTCAGCG
*
16078014 CCCGCATGCTCATTTCGTGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTGACTTAG
**
16078044 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGAGTTGCGTTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGAGTTGCGACAG-AGGATCGACA
* * * * *
16078109 GCACGTAGGGGGGATGGGGTCGAT-CCTCGACTTACGTATTCTACCTCTTCGGTCGGCTGAGCAC
65 GCACGTAGGGGGGATCGGGTCGATCCCT-GACTTACGCATTCTGCCTCTTCGGTCGGCTCAGCGC
* * * *
16078173 CCGCACGCCCGTTTCGGGGGTTGTCTTAG
129 CCGCACGCTCATTTCGTGGGTTGACTTAG
** * ** * * * *
16078202 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGCT-GGACCGA-AGGTTGTGGCAGAGGGATCG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGA-GTTGCGACAGA-GGATCG
** * * * * * *
16078264 ACAGCACACAGAGGGGGATTGGGTCGATCCCCGACTTGCGCATTATGCCTTTTCGGTCGGCTCAA
62 ACAGCACGTAG-GGGGGATCGGGTCGATCCCTGACTTACGCATTCTGCCTCTTCGGTCGGCTCAG
* * *
16078329 CGCCTGAACGCTCATTTTGTGGGTTGACTTAG
126 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
16078361 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTAC-AGCAATAGGATCCAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGAGTTGCGA-C-AGAGGATCGAC
* * * * * * * * * * * *
16078425 AAG-ACG--CGGGGGACCGGGCCGGTCCCCGGCTTACGCATTCTACCCCTTTGGCCGGCTGAGCA
64 -AGCACGTAGGGGGGATCGGGTCGATCCCTGACTTACGCATTCTGCCTCTTCGGTCGGCTCAGCG
* * * *
16078487 CCCACACGCTCATTTCATGGGATGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGACTTAG
**
16078517 GCATATGGAGTTCATTCC
1 GCATACAGAGTTCATTCC
16078535 ATGTGTAAGC
Statistics
Matches: 612, Mismatches: 168, Indels: 58
0.73 0.20 0.07
Matches are distributed among these distances:
156 79 0.13
157 12 0.02
158 288 0.47
159 220 0.36
160 13 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGAGTTGCGACAGAGGATCGACAG
CACGTAGGGGGGATCGGGTCGATCCCTGACTTACGCATTCTGCCTCTTCGGTCGGCTCAGCGCCC
GCACGCTCATTTCGTGGGTTGACTTAG
Found at i:16078883 original size:26 final size:26
Alignment explanation
Indices: 16078853--16078903 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16078843 TGGCTTAGGG
16078853 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
*
16078879 ATACGGGGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16078904 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16079577 original size:26 final size:26
Alignment explanation
Indices: 16079547--16079599 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16079537 GTTGACTGAG
*
16079547 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** *
16079573 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16079599 G
1 G
16079600 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16081068 original size:158 final size:158
Alignment explanation
Indices: 16080837--16081281 Score: 486
Period size: 158 Copynumber: 2.8 Consensus size: 158
16080827 ATGGCAACAG
* * * * * * *
16080837 GATCGACAGCATGCAAGGGGGACCAGGCCGATCCTCGGCTTACGCATTCTACCTCTTCGATCGGT
1 GATCGACAGCACGCAAGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGA
*
16080902 TGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCC
16080967 CCAG-TCGGACCGAGGGTTATGGCAGCGA
131 CCAGCT-GGACCGAGGGTTATGGCAGCGA
* * *
16080995 GATCGACAGCACGCAAGGGGGACCAGGTTGATCCTCGACTCGCGCATTCTGCCTCTCCGGTCGGA
1 GATCGACAGCACGCAAGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGA
** ** ** *
16081060 TGAGCACCCGTACGCCCGTTTTGTGGGTTGGCTTAGTTATAGTGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCC
* * * *
16081125 CCAGCTGGACTGAGGGTTGTGGTAGCGG
131 CCAGCTGGACCGAGGGTTATGGCAGCGA
** * *
16081153 GA-CTGGTAGCACGCAGAGGGGGACC-GAGTCGATCCTC-AGCTTGCGCATTATGCCTCTTCGGC
1 GATC-GACAGCACGCA-AGGGGGACCAG-GTCGATCCTCGA-CTTGCGCATTCTGCCTCTTCGGT
* * *** * * * *
16081215 CGGCTCAATGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCT
62 CGGATGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATT-CCATGTCT
16081279 AAG
126 AAG
16081282 ATCAGACCAG
Statistics
Matches: 237, Mismatches: 44, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 148 0.62
159 85 0.36
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GATCGACAGCACGCAAGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGA
TGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCC
CCAGCTGGACCGAGGGTTATGGCAGCGA
Found at i:16082434 original size:21 final size:20
Alignment explanation
Indices: 16082377--16082436 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
16082367 GCAGCAGGTT
16082377 CGATAGCACGCAGGGGGGAC
1 CGATAGCACGCAGGGGGGAC
* *
16082397 CGACAGCACGTAGGGGGGAC
1 CGATAGCACGCAGGGGGGAC
*
16082417 CGGTAGCACGCAGAGGGGGA
1 CGATAGCACGCAG-GGGGGA
16082437 TCGGGCTGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 28 0.82
21 6 0.18
ACGTcount: A:0.25, C:0.23, G:0.47, T:0.05
Consensus pattern (20 bp):
CGATAGCACGCAGGGGGGAC
Found at i:16082888 original size:171 final size:171
Alignment explanation
Indices: 16082588--16082901 Score: 393
Period size: 171 Copynumber: 1.8 Consensus size: 171
16082578 ACAGCACGCA
*
16082588 GGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGGGCCCGCACACTC
1 GGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCACACTC
* * * * * * * *
16082653 ATTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTTTAAGATAAGACCGGATTGAGGGT
66 ATTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAAACAAGACCAGACTGAGGGT
*
16082718 TGTGACAGTAGGACCAGTAGCAGGATTGGCAGCACGCAGGG
131 TGTGACAGCAGGACCAGTAGCAGGATTGGCAGCACGCAGGG
* ** **
16082759 GGGGATCGGG-CTGATCCCCGGCTTGTGCATTCTGCCTCTCC-AGCCGGCTGAGGGCCCGCAGGC
1 GGGGATCGGGTC-GATCCCCGACTTACGCATTCTGCCTCTCCGA-CCGGCTGAGGGCCCGCACAC
* * *
16082822 TCATTTCATGGGATGGTTTAGGCATATAGAGTTCATT-CCATGTCTAAAACCCAG-CCAGACTGA
64 TCATTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCCA-GTCTAAAA-CAAGACCAGACTGA
*
16082885 GGGTTGTGGCAGCAGGA
127 GGGTTGTGACAGCAGGA
16082902 TCGGCTTGCG
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
170 5 0.04
171 113 0.94
172 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (171 bp):
GGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCACACTC
ATTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAAACAAGACCAGACTGAGGGT
TGTGACAGCAGGACCAGTAGCAGGATTGGCAGCACGCAGGG
Found at i:16083012 original size:26 final size:26
Alignment explanation
Indices: 16082983--16083035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16082973 GTTGACTTAG
*
16082983 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
16083009 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
16083035 G
1 G
16083036 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:16083506 original size:159 final size:159
Alignment explanation
Indices: 16083080--16083508 Score: 404
Period size: 157 Copynumber: 2.7 Consensus size: 159
16083070 GATAGCACGC
* * * ** * * *
16083080 AGGGGGGATCGGGCC-ATCCCCAGCTTGCGCATTCTGTCTCTCCGATTGGCTGAGCGCCTGTACG
1 AGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACG
* * * * *
16083144 CCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCTGCAGTCAGACCAAT
66 CTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATGCAGTCAGACCAAG
**
16083209 GGTTGTGGCAGTGGGACGAACAGCACACA
131 GGTTGTGGCAGCAGGACGAACAGCACACA
* * * * * *
16083238 AAGGGGGA-CCGAGCCGATCCCCGGC-TGCGCATTATGCCTCT-CGACCGGCTCAGCACCCGCAT
1 AGGGGGGATCAG-GCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCAC
* * * *** * * *
16083300 GCTCATTTTATTGGTTGACTTATTTAGACGGAGTTCATTCCCA-GTCTAAGAT-CAGATCGGATC
65 GCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATGCAG-TCAGACC
* * * *
16083363 GAGGGTTGTGGCAGCAGGATC-AATAGGACACC
128 AAGGGTTGTGGCAGCAGGA-CGAACAGCACACA
* * * *
16083395 GGGGGGGATCAGGCCGATCCCCTGCTTGTGCATTATGCCTCTCCGACCGACTAAGCGCCCGCACG
1 AGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACG
* * *
16083460 CTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCGTGTCTAAG
66 CTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16083509 CATACGGAGT
Statistics
Matches: 211, Mismatches: 51, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 99 0.47
158 47 0.22
159 62 0.29
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
AGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACG
CTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATGCAGTCAGACCAAG
GGTTGTGGCAGCAGGACGAACAGCACACA
Found at i:16083519 original size:26 final size:26
Alignment explanation
Indices: 16083482--16083534 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16083472 GTTGGCTTAG
16083482 GCATACGAAGTTCATTCCGT-GTCTAA
1 GCATACGAAGTTCATTCC-TAGTCTAA
*
16083508 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16083534 G
1 G
16083535 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16084621 original size:159 final size:159
Alignment explanation
Indices: 16084356--16084726 Score: 480
Period size: 159 Copynumber: 2.3 Consensus size: 159
16084346 TGAGTGCTCG
* * * *
16084356 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG-TCATT-CCATGTCTAAGCCCTAGCCAGA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCTAGCCAGA
* * *
16084419 CTAAGGGTTGTGCCAACGGGACCGGCAGCACGCAGAGAGGGACCGACCT-GATCCCCGGCTTGCG
65 CCAAGGGTTGTGCCAACGGGACCGGCAGCACGCAGAGAGGGACC-ACCTCGATCCCAGGCTTACG
16084483 CATTATGCCTCTCCGACCGGCTCAGCGCCCA
129 CATTATGCCTCTCCGACCGGCTCAGCGCCCA
**
16084514 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCTAGCTGGAC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCTAGCCAGAC
* ** * * * **
16084579 CGAGGGTTGTGGTAGCGGGACCGGCAGCACGTATAG-GAGGACCAGGTCGATCCCAGGCTTACGC
66 CAAGGGTTGTGCCAACGGGACCGGCAGCACGCAGAGAG-GGACCACCTCGATCCCAGGCTTACGC
* * *
16084643 ATTATGCCTCTCCGGCCGGCTGAGCGCCCG
130 ATTATGCCTCTCCGACCGGCTCAGCGCCCA
* * *
16084673 CACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
16084727 ATACAGAGTT
Statistics
Matches: 186, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
158 35 0.19
159 148 0.80
160 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (159 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCTAGCCAGAC
CAAGGGTTGTGCCAACGGGACCGGCAGCACGCAGAGAGGGACCACCTCGATCCCAGGCTTACGCA
TTATGCCTCTCCGACCGGCTCAGCGCCCA
Found at i:16084735 original size:26 final size:26
Alignment explanation
Indices: 16084699--16084751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16084689 GTTGACTTAG
*
16084699 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16084725 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16084751 G
1 G
16084752 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16084875 original size:342 final size:342
Alignment explanation
Indices: 16084468--16085095 Score: 861
Period size: 342 Copynumber: 1.8 Consensus size: 342
16084458 GGACCGACCT
16084468 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACGCTCGTTTCGTGGGTT
* * *
16084533 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGTAGCG
66 GACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTC-GAACCGAGGGTTGTGGCAGCG
** * * *
16084596 GGACCGGCAGCACGTATAGGAGGACCAGGTCGATCCCAGGCTTACGCATTATGCCTCTCCGGCCG
129 GGACCGGCAGCACACAGAGGAGGACCAGGACGATCCCAGGCTTACACATTATGCCTCTCCGGCCG
* * * *
16084661 GCTGAGCGCCCGCACGCTCA-TTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
194 ACTGAGCGCCCACACGCT-AGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTA
16084724 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCAAT
257 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCAAT
16084789 AGCACACAGGGGGATCGAACC
322 AGCACACAGGGGGATCGAACC
* * * * *
16084810 GATCCCTGGCTTGCTCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC-CTGTTTCGTGGGT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACGCTC-GTTTCGTGGGT
* * * *
16084874 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGATGGTTGTGGCAGTGG
65 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGG
* * * * * * * *
16084939 GACTGGCAGCACACAGAGGGGGATCGGGACGATCCCCGGCTTGCACATTATGCCTTTCTGGCCGA
130 GACCGGCAGCACACAGAGGAGGACCAGGACGATCCCAGGCTTACACATTATGCCTCTCCGGCCGA
* * * * * *
16085004 CTGAGTGCCCACGCGCTAGTTTCGTGGTTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGG
195 CTGAGCGCCCACACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
16085069 ATACAGAGTTCATTCCCAGTCTAAGAT
260 ATACAGAGTTCATTCCCAGTCTAAGAT
16085096 TTTGAGCCAC
Statistics
Matches: 246, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
341 8 0.03
342 237 0.96
343 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (342 bp):
GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGGG
ACCGGCAGCACACAGAGGAGGACCAGGACGATCCCAGGCTTACACATTATGCCTCTCCGGCCGAC
TGAGCGCCCACACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCAATAGCA
CACAGGGGGATCGAACC
Found at i:16085067 original size:501 final size:501
Alignment explanation
Indices: 16084146--16085067 Score: 1269
Period size: 501 Copynumber: 1.8 Consensus size: 501
16084136 TTGCGCATCC
* * * * *
16084146 TGCCTCTCTGGTCGGTTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * *
16084211 ATCCCTAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGT
66 ATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGC
* * * ** * * * *
16084276 AGTAGGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTTCCTTTTCGG
131 AATAGGATCAATAGCACACAGGGGGGATCGAACCGATCCCCGACTTACGCATTCTGCCTCTCCGA
* *
16084341 CCAGCTGAGTGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCATTCCATGTCTA
196 CCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCATTCCATGTCTA
* * *
16084406 AGCCCTAGCCAGACTAAGGGTTGTGCCAACGGGACCGGCAGCACGCAGAGAGGGACCGACCTGAT
261 AGCCCCAGCCAGACCAAGGGTTGTGCCAACGGGACCGGCAGCACACAGAGAGGGACCGACCTGAT
* * *
16084471 CCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGAC
326 CCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCGCCCACACGCTAGTTTCGTGGGTTGAC
*
16084536 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGTAGCGGGACC
391 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGTAGCGGGACC
16084601 GGCAGCACGTATAGGAGGACCAGGTCGATCCCAGGCTTACGCATTA
456 GGCAGCACGTATAGGAGGACCAGGTCGATCCCAGGCTTACGCATTA
*
16084647 TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
16084712 ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC
66 ATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGC
* * * *
16084777 AATAGGATCAATAGCACACA-GGGGGATCGAACCGATCCCTGGCTTGCTCATTCTGCCTCTCCGA
131 AATAGGATCAATAGCACACAGGGGGGATCGAACCGATCCCCGACTTACGCATTCTGCCTCTCCGA
* * *
16084841 CCGGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
196 CCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG-TCATTCCATGTCT
* * * * ** * * *
16084906 AAGCCCCAGTC-GAACCGATGGTTGTGGCAGTGGGACTGGCAGCACACAGAGGGGGATCGGGA-C
260 AAGCCCCAGCCAG-ACCAAGGGTTGTGCCAACGGGACCGGCAGCACACAGAGAGGGA-C-CGACC
* * * * * * *
16084969 -GATCCCCGGCTTGCACATTATGCCTTTCTGGCCGACTGAGTGCCCACGCGCTAGTTTCGTGGTT
322 TGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCGCCCACACGCTAGTTTCGTGGGT
*
16085033 TGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
387 TGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
16085068 GATACAGAGT
Statistics
Matches: 361, Mismatches: 55, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
500 84 0.23
501 273 0.76
502 2 0.01
503 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (501 bp):
TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGC
AATAGGATCAATAGCACACAGGGGGGATCGAACCGATCCCCGACTTACGCATTCTGCCTCTCCGA
CCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTCATTCCATGTCTA
AGCCCCAGCCAGACCAAGGGTTGTGCCAACGGGACCGGCAGCACACAGAGAGGGACCGACCTGAT
CCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCGCCCACACGCTAGTTTCGTGGGTTGAC
TTAGGCATACAGAGTTCATTCCCAGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGTAGCGGGACC
GGCAGCACGTATAGGAGGACCAGGTCGATCCCAGGCTTACGCATTA
Found at i:16085072 original size:26 final size:26
Alignment explanation
Indices: 16085043--16085093 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16085033 TGGCTTAGGC
16085043 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
16085069 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16085094 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:16086120 original size:158 final size:157
Alignment explanation
Indices: 16085635--16086125 Score: 497
Period size: 158 Copynumber: 3.1 Consensus size: 157
16085625 CCCAGTCTAA
* * *
16085635 GCATATGGAGTTCA-TTCTCAGTCTAAGATCAGATC-AGACCGAGGGTTGCTACAGTAGGATCGG
1 GCATATGGAGTTCATTTCT-AGTCTAAGATCAGACCGA-ACCGAGGGTTGCGACAGTAGGATCGA
* *
16085698 CAGCACACAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTACCTCTCTGGCCGACTGAGCG
64 CAGCACACAGGGGGGATCGGGTCGATCCCCG-CTTGTGCATTCTGCCTCTCCGGCCGACTGAGCG
* *
16085763 CCCGCACGCTCGTTTTGTGGGTTAGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * ** *
16085793 GCATAGGGAGTT-AATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTATGGCAGCT-GGATCG
1 GCATATGGAGTTCATTTCTA-GTCTAAG-ATCAGACCGAACCGAGGGTTGCGACAG-TAGGATCG
* * * * *** * *
16085855 ACAGCACACAGAGGGGGACCAGGTCAATCCCCGGCTTGTGCATTATGCCTCTCCGATTGGCTCAG
63 ACAGCACACAG-GGGGGATCGGGTCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCGACTGAG
* ** * *
16085920 CACCTACACGCTCATTTCGTGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
16085952 GCATACGGAGTTCATTTCTACTCTGAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATATGGAGTTCATTTCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACA
* * *
16086017 GCACGCAGGAGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
66 GCACACAGGGGGGATCGGGTCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* * ** *
16086082 CGCATGCTCGTTTCATGCATTGGTTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
16086110 GCATATGGAGTTCATT
1 GCATATGGAGTTCATT
16086126 CCATGTCAAG
Statistics
Matches: 259, Mismatches: 64, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 133 0.51
159 118 0.46
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTTCTAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACA
GCACACAGGGGGGATCGGGTCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16087519 original size:26 final size:26
Alignment explanation
Indices: 16087482--16087534 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16087472 GTTGACTTAG
16087482 GCATACGAAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
16087508 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16087534 G
1 G
16087535 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16087976 original size:158 final size:157
Alignment explanation
Indices: 16087508--16088012 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 157
16087498 TCCAGTCTAA
* * *
16087508 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
16087573 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTTCGGCCGATTGACCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCGA-CTTGCGCATTCTGCCTCTTCGACCGATTGAACGCC
* *
16087638 CGTACGCCTGA-TTCATGGGTTGGCTTAG
130 CGCACG-CTCATTTCATGGGTTGGCTTAG
**** * * * *
16087666 GCATA-GGTAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCG
1 GCATACGG-AGTTCATTCCCA-GTCTAAGATTGGA-TCAGACCGAGGGTTGCGGTAGCAGGATCG
* * * * * * * ** *
16087728 ACAACACTCAGAGAGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAA
63 ACAGCACGCAG-GGGGGACCGGGCCGAT-CCCGACTTGCGCATTCTGCCTCTTCGACCGATTGAA
* ** * ** * * *
16087793 TGATCACACGCTCATTTTGTTGGTTGACTTAT
126 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * * *
16087825 GCATACAGAGTTCATTTCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGATAGAAGGTTCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * *
16087890 GCACGCAGGGGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTTCGACCGATTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCC-CGACTTGCGCATTCTGCCTCTTCGACCGATTGAACGCC
*
16087955 CGCATGCTCATTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
*
16087983 GCATACGGACTTCATTCCCAGTCTAAGATT
1 GCATACGGAGTTCATTCCCAGTCTAAGATT
16088013 TTGAGCCACG
Statistics
Matches: 260, Mismatches: 77, Indels: 20
0.73 0.22 0.06
Matches are distributed among these distances:
157 8 0.03
158 141 0.54
159 103 0.40
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCGACTTGCGCATTCTGCCTCTTCGACCGATTGAACGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:16088719 original size:26 final size:26
Alignment explanation
Indices: 16088690--16088742 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16088680 GTTGACTTTG
*
16088690 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16088716 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16088742 G
1 G
16088743 ATCATACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16089233 original size:157 final size:153
Alignment explanation
Indices: 16088751--16089294 Score: 384
Period size: 157 Copynumber: 3.4 Consensus size: 153
16088741 AGATCATACC
* * * *
16088751 GGATCGAGGGTTACGATAGTAGGATCGGCAGCACGCAGGGGGGACCGAGCTAATCCCCGGCTTGT
1 GGATCGAGGGTTGCGATAGTAGGATCGGCAGCACGCA-GGGGGAACGAGC-GATCCCCGGCTTGC
* * * * *
16088816 GCAATCTACCTCTCCGACCGACTGAG-AGCCAGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAA
64 GCATTCTACCTCT-CGATCGACTGAGTA-CC-GCACGCCCATTTCATGGGTTGGCTTAGGCATAA
*
16088880 GGAGTTCA-TTCTATGTCTAAGCCCCAGCC
126 GGAGTTCATTTC-ATGTCTAAG-CCCAGCA
* * * * * * * *
16088909 GGA-CTGAGGGTTGTGGTAGTGGGA-CTGGCAACACGCAGAGGGGGACTGTGCCGGTCTCCGGCT
1 GGATC-GAGGGTTGCGATAGTAGGATC-GGCAGCACGCAG-GGGGAAC-GAG-CGATCCCCGGCT
* * * * * * ** *
16088972 TGCGCATTATGCCTCTCCAGTCGGCTCAGTACCCACACGCTGATTTCATGGGTTGACTTAGGCAT
61 TGCGCATTCTACCTCTCGA-TCGACTGAGTA-CCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
* * * **
16089037 ATGGACTTCATTCCCA-GTCTAAGATCAG-A
124 AAGGAGTTCATT-TCATGTCTAAGCCCAGCA
* * * * * *
16089066 TCGGACCGAGGGTTGCGACAGCAGGATCGACAGTACGCAGGGGGAACGAGTCGATCCCCAGCTTG
1 --GGATCGAGGGTTGCGATAGTAGGATCGGCAGCACGCAGGGGGAACGAG-CGATCCCCGGCTTG
*
16089131 CGCATTCTACCTCTCTGATCGACTGAGTACTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
63 CGCATTCTACCTCTC-GATCGACTGAGTAC-CGCACGCCCATTTCATGGGTTGGCTTAGGCATAA
*
16089196 GGAGTTCATTTCATCTCTAAGCCCTAGCA
126 GGAGTTCATTTCATGTCTAAGCCC-AGCA
* ** ** * *
16089225 GGATCGAGGGTTGTGGCAGCGGGA-CTGGCAGCACGCAGAGAGGGATCGGGCTGATCCCCGGCTT
1 GGATCGAGGGTTGCGATAGTAGGATC-GGCAGCACGCAG-G-GGGAACGAGC-GATCCCCGGCTT
16089289 G-GCATT
62 GCGCATT
16089295 ATGCTTCCCC
Statistics
Matches: 293, Mismatches: 71, Indels: 44
0.72 0.17 0.11
Matches are distributed among these distances:
156 4 0.01
157 113 0.39
158 54 0.18
159 113 0.39
160 8 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (153 bp):
GGATCGAGGGTTGCGATAGTAGGATCGGCAGCACGCAGGGGGAACGAGCGATCCCCGGCTTGCGC
ATTCTACCTCTCGATCGACTGAGTACCGCACGCCCATTTCATGGGTTGGCTTAGGCATAAGGAGT
TCATTTCATGTCTAAGCCCAGCA
Found at i:16089441 original size:316 final size:315
Alignment explanation
Indices: 16088716--16089559 Score: 914
Period size: 316 Copynumber: 2.7 Consensus size: 315
16088706 CCCAGTCTAA
* * ** * * * * * * * *
16088716 GCATACAGAGTTCATTCCTAGTCTAAGATCATACCGGATCGAGGGTTACGATAGTAGGATCGGCA
1 GCATACAGACTTCATTCCCAAACTAAGATCAGACCAGACCGAGGGCTGCGACAGCAGGATCGACA
* * * *
16088781 GCACGCAGGGGGGACCGAGCTAATCCCCGGCTTGTGCAATCTACCTCTCCGACCGACTGAG-AGC
66 GCACGCAGGGGGGAACGAGTTAATCCCCAGCTTGTGCATTCTACCTCTCCGACCGACTGAGTA-C
*
16088845 CAGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCA-TTCTATGTCTAAGCCCCAGCC
130 C-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTTC-ATGTCTAAGCCCCAGCC
* * * * * *
16088909 GGACTGAGGGTTGTGGTAGTGGGACTGGCAACACGCAGAGGGGGACTGTGCCGGTCTCCGGCTTG
193 GGAC-GAGGGTTGTGGCAGCGGGACTGGCAACACGCAGAGAGGGACTGGGCCGATCCCCGGCTTG
* * * *
16088974 CGCATTATGCCTCTCCAGTCGGCTCAGTACCCACACGCTGATTTCATGGGTTGACTTAG
257 CGCATTATGCCTCCCCAGCCAGCTCAGCACCCACACGCTGATTTCATGGGTTGACTTAG
** ** * * *
16089033 GCATATGGACTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACAGACTTCATTCCCAAACTAAGATCAGACCAGACCGAGGGCTGCGACAGCAGGATCGACA
* ** * * *
16089098 GTACGCA-GGGGGAACGAGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGATCGACTGAGTACT
66 GCACGCAGGGGGGAACGAGTTAATCCCCAGCTTGTGCATTCTACCTCTCCGACCGACTGAGTAC-
* * * * * *
16089162 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATCTCTAAGCCCTAGCAGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTTCATGTCTAAGCCCCAGCCGG
* *
16089227 ATCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGAGGGA-TCGGGCTGATCCCCGGCTTG-
195 A-CGAGGGTTGTGGCAGCGGGACTGGCAACACGCAGAGAGGGACT-GGGCCGATCCCCGGCTTGC
* ** ** *
16089290 GCATTATGCTTCCCC-GACCAGCTCAGCGTCTGCATGCTCG-TTTCATGGGTTGACTTAG
258 GCATTATGCCTCCCCAG-CCAGCTCAGCACCCACACGCT-GATTTCATGGGTTGACTTAG
* * *
16089348 GCGTGCAGAGTTCATTCCCAAACTAAGATC-GAACCAGACCGAGGGCTGCTG-CAGCAGGATCGA
1 GCATACAGACTTCATTCCCAAACTAAGATCAG-ACCAGACCGAGGGCTGC-GACAGCAGGATCGA
* * * *
16089411 CAGCACGCAGGGGGGATCGGGTTAATCCCCAGCTTGTGCATTCTGCCTTTCCGACCGACTGAGTG
64 CAGCACGCAGGGGGGAACGAGTTAATCCCCAGCTTGTGCATTCTACCTCTCCGACCGACTGAGT-
* * * * *
16089476 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCCCCAGCC
128 ACCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTTCATGTCTAAGCCCCAGCC
16089541 GGACCGAGGGTTGTGGCAG
193 GGA-CGAGGGTTGTGGCAG
16089560 TAGGACCGAT
Statistics
Matches: 439, Mismatches: 77, Indels: 23
0.81 0.14 0.04
Matches are distributed among these distances:
314 2 0.00
315 102 0.23
316 268 0.61
317 67 0.15
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACAGACTTCATTCCCAAACTAAGATCAGACCAGACCGAGGGCTGCGACAGCAGGATCGACA
GCACGCAGGGGGGAACGAGTTAATCCCCAGCTTGTGCATTCTACCTCTCCGACCGACTGAGTACC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTTCATGTCTAAGCCCCAGCCGGA
CGAGGGTTGTGGCAGCGGGACTGGCAACACGCAGAGAGGGACTGGGCCGATCCCCGGCTTGCGCA
TTATGCCTCCCCAGCCAGCTCAGCACCCACACGCTGATTTCATGGGTTGACTTAG
Found at i:16089532 original size:158 final size:158
Alignment explanation
Indices: 16088771--16089564 Score: 563
Period size: 158 Copynumber: 5.0 Consensus size: 158
16088761 TTACGATAGT
* * * * *
16088771 AGGATCGGCAGCACGCAGGGGGGACCGAGCTAATCCCCGGCTTGTGCAATCTACCTCTCCGACCG
1 AGGATCGGCAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * * * * * *
16088836 ACTGAGAGCCAGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAG
66 ACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * * *
16088901 CCCCAGCCGGACTGAGGGTTGTGGTAGT
131 ACCCAACCAGACCGAGGGTTGTGGCAGC
* * * * * * *
16088929 GGGA-CTGGCAACACGCAGAGGGGGA-CTGTGCCGGTCTCCGGCTTGCGCATTATGCCTCTCC-A
1 AGGATC-GGCAGCACGCAG-GGGGGATC-GAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * * * * * *
16088991 GTCGGCTCAGTACCCACACGCT-GATTTCATGGGTTGACTTAGGCATATGGACTTCATTCCCA-G
63 -CCGACTGAGTGCCCGCACGCTCG-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* * * * *
16089054 TCTAAGA-TCAGATCGGACCGAGGGTTGCGACAGC
125 TCTAAGACCCA-ACCAGACCGAGGGTTGTGGCAGC
* * * * * * *
16089088 AGGATCGACAGTACGCA-GGGGGAACGAG-TCGATCCCCAGCTTGCGCATTCTACCTCTCTGATC
1 AGGATCGGCAGCACGCAGGGGGGATCGAGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * * * * * *
16089151 GACTGAGTACTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATCTCTAA
65 GACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
16089216 G-CCCTAGCAGGATCGAGGGTTGTGGCAGC
130 GACCCAACCA-GACCGAGGGTTGTGGCAGC
* * * * * *
16089245 GGGA-CTGGCAGCACGCAGAGAGGGATCGGGCTGATCCCCGGCTTG-GCATTATGCTTCCCCGAC
1 AGGATC-GGCAGCACGCAG-GGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
* * * * * * * * * **
16089308 C-AGCTCAGCGTCTGCATGCTCGTTTCATGGGTTGACTTAGGCGTGCAGAGTTCATTCCCA-AAC
64 CGA-CTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTC
* * *
16089371 TAAGATCGAACCAGACCGAGGGCTGCT-GCAGC
127 TAAGACCCAACCAGACCGAGGGTTG-TGGCAGC
* * * * * * *
16089403 AGGATCGACAGCACGCAGGGGGGATCGGGTTAATCCCCAGCTTGTGCATTCTGCCTTTCCGACCG
1 AGGATCGGCAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * *
16089468 ACTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAG
66 ACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
16089533 CCCCAGCCGGACCGAGGGTTGTGGCAGT
131 ACCCAACCAGACCGAGGGTTGTGGCAGC
16089561 AGGA
1 AGGA
16089565 CCGATACTAG
Statistics
Matches: 477, Mismatches: 131, Indels: 56
0.72 0.20 0.08
Matches are distributed among these distances:
156 5 0.01
157 140 0.29
158 192 0.40
159 136 0.29
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGATCGGCAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
ACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
ACCCAACCAGACCGAGGGTTGTGGCAGC
Found at i:16089764 original size:184 final size:184
Alignment explanation
Indices: 16089455--16089888 Score: 805
Period size: 184 Copynumber: 2.4 Consensus size: 184
16089445 TGTGCATTCT
** * * * * *
16089455 GCCTTTCCGACCGACTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTTTCCGGTCGATTGAGTGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCA
16089520 TTACATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGATACTAGGATCGACAGC
66 TTACATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGATACTAGGATCGACAGC
16089585 ACGTAGAGGGGGACCAGGCTGATCTCCGGCTTGCGCATTATGCCTCTCTGGCCA
131 ACGTAGAGGGGGACCAGGCTGATCTCCGGCTTGCGCATTATGCCTCTCTGGCCA
16089639 GCCTTTCCGGTCGATTGAGTGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCA
1 GCCTTTCCGGTCGATTGAGTGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCA
16089704 TTACATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGATACTAGGATCGACAGC
66 TTACATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGATACTAGGATCGACAGC
16089769 ACGTAGAGGGGGACCAGGCTGATCTCCGGCTTGCGCATTATGCCTCTCTGGCCA
131 ACGTAGAGGGGGACCAGGCTGATCTCCGGCTTGCGCATTATGCCTCTCTGGCCA
16089823 GCCTTTCCGGTCGATTGAGTGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCA
1 GCCTTTCCGGTCGATTGAGTGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCA
16089888 T
66 T
16089889 CCTCAGTCAA
Statistics
Matches: 243, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
184 243 1.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (184 bp):
GCCTTTCCGGTCGATTGAGTGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCA
TTACATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGATACTAGGATCGACAGC
ACGTAGAGGGGGACCAGGCTGATCTCCGGCTTGCGCATTATGCCTCTCTGGCCA
Found at i:16091462 original size:26 final size:26
Alignment explanation
Indices: 16091426--16091478 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16091416 GTTGACTTAG
16091426 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16091452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16091478 G
1 G
16091479 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16091920 original size:158 final size:154
Alignment explanation
Indices: 16091452--16091952 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 154
16091442 CCCAGTCTAA
* * * *
16091452 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTAGAGCGAGGGTTGCGACAGTAGGATCGGC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACTGGA-CGAGGGTTGTGGCAGTAGGATCGGC
* * * * *
16091516 AGCAAGCAGGGGGGACCGGGCCAACCCCTGGCTTGCGCATTTTGCCTCTCTAGCTGGCTGAGCGC
64 AGCAAGCAGGGGGGACTGGGCGATCCCC--GCTTGCGCATTATGCCTCTCGA-CTGGCTGAGCGC
* * **
16091581 CCGCATGCCCATTTTGTGGGTTCCCTTAG
126 CCGCACGCTCATTTTGTGGGTTGACTTAG
* * ** *
16091610 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTGGACTGAGGGTTGTGGCAGTGGGATCGGC
1 GCATATGGAGTTCATTCCATGTCTAAGATCGGA-CTGGAC-GAGGGTTGTGGCAGTAGGATCGGC
* * * *
16091674 AGCATGCAGAGGGGGA-TCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
64 AGCAAGCAG-GGGGGACT-GGG-CGATCCCCG-CTTGCGCATTATGCCTC-TCGACTGGCTGAGC
* *
16091738 GCCCGTACGCTCGTTTTGTGGGTTGACTTAG
124 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
* * * * *
16091769 GTATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACAGAGGGTTGTGGCAGCAAGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACTGGAC-GAGGGTTGTGGCAGTAGGATCGGC
* * * * *
16091833 AGCACGTAGGGGGGACTGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCCGACTGGTTGAGCGC
64 AGCAAGCAGGGGGGACTGGGC-GATCCCC-GCTTGCGCATTATGCCTCT-CGACTGGCTGAGCGC
** *
16091898 CCGCACGCTCATTTCATGGGTTGGCTTAG
126 CCGCACGCTCATTTTGTGGGTTGACTTAG
*
16091927 GCATATGGACTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
16091953 ACATACGGAG
Statistics
Matches: 279, Mismatches: 49, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
157 11 0.04
158 142 0.51
159 113 0.41
160 13 0.05
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (154 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGGACTGGACGAGGGTTGTGGCAGTAGGATCGGCAG
CAAGCAGGGGGGACTGGGCGATCCCCGCTTGCGCATTATGCCTCTCGACTGGCTGAGCGCCCGCA
CGCTCATTTTGTGGGTTGACTTAG
Found at i:16091966 original size:26 final size:26
Alignment explanation
Indices: 16091928--16091978 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16091918 TTGGCTTAGG
*
16091928 CATATGGACTTCATT-CCATGTCTAAA
1 CATACGGACTTCATTCCCA-GTCTAAA
*
16091954 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGACTTCATTCCCAGTCTAA
16091979 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGACTTCATTCCCAGTCTAAA
Found at i:16092642 original size:26 final size:26
Alignment explanation
Indices: 16092606--16092658 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16092596 GTTGACATAG
* *
16092606 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16092632 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16092658 G
1 G
16092659 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16092823 original size:26 final size:26
Alignment explanation
Indices: 16092787--16092842 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
16092777 TGGGTTGGCT
16092787 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
16092813 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16092839 TAAG
1 TAAG
16092843 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16093221 original size:26 final size:26
Alignment explanation
Indices: 16093170--16093222 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16093160 GTGGACTTAG
*
16093170 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGCCTAA
*
16093196 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACAGAGTTCA-TCCCTAGCCTAA
16093222 G
1 G
16093223 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGCCTAA
Found at i:16093885 original size:26 final size:26
Alignment explanation
Indices: 16093855--16093907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16093845 GTGGACTTAG
*
16093855 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16093881 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16093907 G
1 G
16093908 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16094382 original size:684 final size:682
Alignment explanation
Indices: 16092875--16094382 Score: 1983
Period size: 684 Copynumber: 2.2 Consensus size: 682
16092865 GATAGCAGGA
* * * * ** * * * *
16092875 CCAGCAGCAGGATCGACAGCATGCAGGAGGGACCGGGTTGATCCCCGACTTCCGAATTTTACCTT
1 CCAGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCG-CTTGAGCATTCTGCCTC
* *
16092940 TCCGACTGGCTGAGCGCCTGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
65 TCCGACTGGCTGAG-GCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * *
16093005 TCTCTAAGCCCTAGCTGAACCGAGGGTTGTGGCAGCAGGACAGGCAACGAGATTGGTAGCATGCA
128 TCTTTAAGCCCTAGCCGAACCGAGGGTTGTGGCAGCAGGACAGGCAACGAGATTGGCAGCATACA
* *
16093070 GAGGGGGACCGAGCTGATCACCGGCTTACGCATTATGCCTTTCTGGCCGGCCTCACGGGCCGACT
193 GAGGGGGACCGAGCTGATCACCGGCTTACGCATTATGCCTCTCTGGCCGGCCTCACCGGCCGACT
*
16093135 GAACGCCCGCACGCACATTTCATGGGTGGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCAT
258 GAACGCCCGCACGCACATTTCATGGGTGGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAT
*
16093200 ACGGAGTTCATTCCCAGCCTAAGATCGAACCAGACCGAGGTTTGCGACAGCAAGATCAGCAGTAC
323 ACGAAGTTCATTCCCAGCCTAAGATCGAACCAGACCGAGGTTTGCGACAGCAAGATCAGCAGTAC
* *
16093265 GCAGGGGGGACTAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCCACA
388 GCAGAGAGGACTAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCCACA
* *
16093330 CGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCA
453 CGCCCATTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCA
* * * * * *
16093395 AGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGAGGGATCGGGTCGATCCCTGGCTTACGCATT
518 AGGGTTGTGGCAGCAGGACCGACAGCAAGCAGAGAGGGACCAGGCCGATCCCCGGCTTACGCATT
* * *** * *
16093460 ATGCCTCTTCGACCGGCTCAGAGCCTGTACACTCATTTCATTGGTTGACTTATGCATACAAAGTT
583 ATGCCTCTCCGACCGACTCAGAGCCCACACACTCATTTCATTGGTTGACTTAGGCACACAAAGTT
* * *
16093525 CATTCCCAGTCTAAGATCAGATCGAACTGAGGGTT
648 CATTCCCAGTCTAAAATCAGACCGAACCGAGGGTT
* * * * *** *
16093560 GCAGTAGCAGGATCAAAAGCACGCAGGGGGGACCAGGTCGATTCTTGGCTTGCA-CATTCTGGCT
1 CCAGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGA-TCCCCGCTTG-AGCATTCTGCCT
* * * * *
16093624 CTCCGGCTGGCTGAACGGCCGCACCCCCGTTTCATGGGTTGGCATAGGCATA-GGAAGTTCGTTC
64 CTCCGACTGGCTG-A-GGCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTC
* *
16093688 CATCTTTAAGCCCTAGCCGAATCGAGGGTTGTGGCAGCAGGATAGGCAACGAGATTGGCAGCATA
126 CATCTTTAAGCCCTAGCCGAACCGAGGGTTGTGGCAGCAGGACAGGCAACGAGATTGGCAGCATA
* *
16093753 CAGAGGGGGACCGAGCTGATCACCGGCTTATGCATTATGCCTCTCTGGCCGGCCTCACCGGCCGG
191 CAGAGGGGGACCGAGCTGATCACCGGCTTACGCATTATGCCTCTCTGGCCGGCCTCACCGGCCGA
* *
16093818 CT-AAGTGCCCGCACGCACATTTCATGGGTGGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
256 CTGAA-CGCCCGCACGCACATTTCATGGGTGGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* * * *
16093882 CATACGAAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGTTTGCGACAGTAGGATCAGCAG
320 CATACGAAGTTCATTCCCAGCCTAAGATCGAACCAGACCGAGGTTTGCGACAGCAAGATCAGCAG
* * * * * *
16093947 TACGCA-AGAGGACTAGGCCGATCCTCGGCTTATGCATTCTGCCTCTCTGGTCGGTTGAGCACCT
385 TACGCAGAGAGGACTAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCC
* * * * * *
16094011 GCACGCCCGTTTTGTGGGTTGTCATAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCC-GA
450 ACACGCCCATTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-
* * * **
16094075 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCAAGCAGA-AGGGGACCAGGCCGATCCCCGGCTTGT
514 ACCAAGGGTTGTGGCAGCAGGACCGACAGCAAGCAGAGA-GGGACCAGGCCGATCCCCGGCTTAC
* *
16094139 GCATTATGCCTCTCCCG-CCGACTCAGCGCCCACACGCTCATTTC-TTGGGTTGACTTAGGCACA
578 GCATTATGCCTCT-CCGACCGACTCAGAGCCCACACACTCATTTCATT-GGTTGACTTAGGCACA
* *
16094202 CAGAGTTCATTCCTAGTCTAAAATCAGACC-AGACCGAGGGTT
641 CAAAGTTCATTCCCAGTCTAAAATCAGACCGA-ACCGAGGGTT
* *
16094244 CC-GATAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCAGCTTGAGCATTCTGCCT
1 CCAG-TAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCC-GCTTGAGCATTCTGCCT
* *
16094308 CTCCGACCGGCTGAGTGCGCGCACGCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCC
64 CTCCGACTGGCTGAG-GC-CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
*
16094373 ATGTTTAAGC
127 ATCTTTAAGC
16094383 ATACGGAGTT
Statistics
Matches: 704, Mismatches: 102, Indels: 35
0.84 0.12 0.04
Matches are distributed among these distances:
682 1 0.00
683 12 0.02
684 347 0.49
685 336 0.48
686 7 0.01
687 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (682 bp):
CCAGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGCTTGAGCATTCTGCCTCT
CCGACTGGCTGAGGCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCT
TTAAGCCCTAGCCGAACCGAGGGTTGTGGCAGCAGGACAGGCAACGAGATTGGCAGCATACAGAG
GGGGACCGAGCTGATCACCGGCTTACGCATTATGCCTCTCTGGCCGGCCTCACCGGCCGACTGAA
CGCCCGCACGCACATTTCATGGGTGGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACG
AAGTTCATTCCCAGCCTAAGATCGAACCAGACCGAGGTTTGCGACAGCAAGATCAGCAGTACGCA
GAGAGGACTAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACCCACACGC
CCATTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
GTTGTGGCAGCAGGACCGACAGCAAGCAGAGAGGGACCAGGCCGATCCCCGGCTTACGCATTATG
CCTCTCCGACCGACTCAGAGCCCACACACTCATTTCATTGGTTGACTTAGGCACACAAAGTTCAT
TCCCAGTCTAAAATCAGACCGAACCGAGGGTT
Found at i:16095071 original size:159 final size:160
Alignment explanation
Indices: 16094800--16095332 Score: 490
Period size: 159 Copynumber: 3.4 Consensus size: 160
16094790 TGCGACAGTA
* * * * * ** * *
16094800 GGATCGATAGCACGCAG-GGTGTACCGGGCTGATCCCCAGCTTGTGCATTTTACCT-TTCTGGTC
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCTGGTC
* * * * ** * *
16094863 GACTAAGCACCTGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAA
66 GACTCAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
*
16094928 GCCCCAGTCGGACCGAGGGTTCTGGCAGCG
131 GCCCCAGCCGGACCGAGGGTTCTGGCAGCG
* * * *
16094958 GGATCGACAGCACGCAGAAGGGGATCGGGCCGATCCCTGGCTTATGCATTATGCCTCTTC-GG-C
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCTGGTC
* * * * * * * *
16095021 TGGCTCAGCGCCCGCACGCTCATTTTATGGGTTGACTTATGCAAATGGAGTTCATTCCCA-GTCT
66 -GACTCAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCT
** * * * * *
16095085 AAGATCGAACCGAACCGAGGGTTGC-AGCAGCA
129 AAGCCCCAGCCGGACCGAGGGTT-CTGGCAGCG
* * * * * *
16095117 GGATCGATAGCACGCAG-GGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGGTC
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCTGGTC
* * *
16095180 GACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAA
66 GACTCAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * *
16095245 GCCCTAGCCAGACTGAGGGTTGTGGCAGCG
131 GCCCCAGCCGGACCGAGGGTTCTGGCAGCG
* * *
16095275 GGACCGACAGCACGCAGAGGGGGACCAGGCCGAT-CCTCGACTTGTGCATTACGCCTCT
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCT-GGCTTGTGCATTATGCCTCT
16095333 CCGGTCGGCT
Statistics
Matches: 290, Mismatches: 73, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.01
158 136 0.47
159 143 0.49
160 7 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCTGGTC
GACTCAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGCCGGACCGAGGGTTCTGGCAGCG
Found at i:16095468 original size:144 final size:144
Alignment explanation
Indices: 16095199--16095477 Score: 314
Period size: 144 Copynumber: 1.9 Consensus size: 144
16095189 CCCGCACACC
* * * *
16095199 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCAGACTGAGGG
1 CGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCGAGCCAGACCGAGGG
** ** * * *
16095264 TTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCTCGACTTGTGCATTAC-G
66 TTGCAGCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGCGCATT-CTG
16095328 CCTCTCCGGTCGGCT
130 CCTCTCCGGTCGGCT
* * **
16095343 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCG-GACCAGACCGAG
1 CGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCGAG-CCAGACCGAG
* * ** *
16095406 GGTTGCAGCAGCAAGATCGATAGCACGCAG-GGGGGAACTGGGCCAATCCCCGGCTTGCGCATTC
64 GGTTGCAGCAGCAAGACCGACAGCACGCAGAGGGGG-ACCAGGCCAATCCCCGACTTGCGCATTC
16095470 TGCCTCTC
128 TGCCTCTC
16095478 TGACCAACTG
Statistics
Matches: 111, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
143 7 0.06
144 102 0.92
145 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (144 bp):
CGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCGAGCCAGACCGAGGG
TTGCAGCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGC
CTCTCCGGTCGGCT
Found at i:16095926 original size:26 final size:26
Alignment explanation
Indices: 16095887--16095940 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16095877 TGGGTTGAGT
*
16095887 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
*
16095913 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
16095939 TA
1 TA
16095941 AGATCGGCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:16096226 original size:159 final size:159
Alignment explanation
Indices: 16095978--16096420 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 159
16095968 AGTAGGATTG
* * * *
16095978 ACAGCATGC-AGGGGGGATCGGGCTGAGCCCCGACTTGCGCATTCTGCC-TCTCTGGCCGGCTGA
1 ACAGCATGCAAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTTC-GGCCGGCTGA
* * * * * *
16096041 GCGCCCGTACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTAAGCACCA
** ** *
16096106 G-CCGGACCGAGGGTTGTGGCAGTGGGACCG
129 GACCGGACCGAGGGTTGCAGCAGCAGGACCA
** * * * * *
16096136 GTAGCATGCAAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGACCGGCTCAG
1 ACAGCATGCAAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAG
* * * ** * *
16096201 CACCCGCACGCTTGTTTCATGGGTTGACTTACACATACGGAGTTCATTCCTAGTCTAAG-ATCGG
66 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCT-GTCTAAGCACCAG
* *
16096265 ACCGGACCGAGGGTTGCAGTAGCAGGATCA
130 ACCGGACCGAGGGTTGCAGCAGCAGGACCA
* * * * * * * * *
16096295 ACAGCACGCAGGGGGGGACTGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCAGCTGAG
1 ACAGCATGCAAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAG
* *
16096360 CACCCGCACGATCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTATCTAAGCA
66 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTAAGCA
16096421 TACAGAGTTC
Statistics
Matches: 225, Mismatches: 54, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
158 10 0.04
159 210 0.93
160 5 0.02
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
ACAGCATGCAAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTTCGGCCGGCTGAG
CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTGTCTAAGCACCAGA
CCGGACCGAGGGTTGCAGCAGCAGGACCA
Found at i:16096441 original size:26 final size:26
Alignment explanation
Indices: 16096392--16096442 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16096382 GTTGGCTTAG
* *
16096392 GCATACGGAGTTCATTCCTTATCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
16096418 GCATACAGAGTTCATTTCC-AATCTA
1 GCATACAGAGTTCA-TTCCTAATCTA
16096443 TGATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:16101236 original size:26 final size:26
Alignment explanation
Indices: 16101207--16101259 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16101197 GTTGACTTAG
* *
16101207 GCATACGGAGTTTA-TCCCCAGTCTAA
1 GCATACGAAGTTTAGT-CCAAGTCTAA
*
16101233 GCATATGAAGTTTAGTCCAAGTCTAA
1 GCATACGAAGTTTAGTCCAAGTCTAA
16101259 G
1 G
16101260 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTTAGTCCAAGTCTAA
Found at i:16103185 original size:26 final size:26
Alignment explanation
Indices: 16103139--16103189 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16103129 TAACTTAGGC
*
16103139 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTAATCCCCAGTCTAAGG
* *
16103165 ATACGGAGTTAATTCCTAGTCTAAG
1 ATACGGAGTTAATCCCCAGTCTAAG
16103190 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTAATCCCCAGTCTAAGG
Found at i:16103952 original size:159 final size:158
Alignment explanation
Indices: 16103656--16104160 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 158
16103646 CCCCAGTCTA
** * * * *
16103656 AGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGA-TAG
1 AGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCAGACCGAGGGTTGCGGCACCAAGACT-G
* * * * * **
16103719 GCAACACGTA-AGGGGGATCGAGCTGATCCCCGGGTTGCACATTCTGCCTCTCCGGCTGAC-CGA
64 ACAACACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGATTGACTC-A
* * *
16103782 GCGCTCACACGCCCGTTTCATGGGGTGGCTT
128 GCGCCCACACGCTCGTTTCATGGGTTGGCTT
* * * * * * ** *
16103813 AGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCAGTAAGACTGG
1 AG-CATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGACCGAGGGTTGCGGCACCAAGACTGA
* * * *
16103878 CAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTTCAATTGACTCAGT
65 CAACACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGATTGACTCAGC
*
16103943 GCCCACACGCTCGTTTCATGGGTTGACTT
130 GCCCACACGCTCGTTTCATGGGTTGGCTT
* ** * *
16103972 ATGCATATGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGCGGCACCAGGATTG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCAGACCGAGGGTTGCGGCACCAAGACTG
* * * * * * * * *
16104036 ATAACACGCAGCGGGGGATCGCGCCGATCCTCAGCTTGCGCATTCTGCCTCTTCGATCGGCTTAG
64 ACAACACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGATTGACTCAG
* * *
16104101 CACCCGCATGCTCGTTTCATGGGTTGGCTT
129 CGCCCACACGCTCGTTTCATGGGTTGGCTT
*
16104131 GGGCATACGGAGTTCATTCCATGTCTAAGC
1 -AGCATACGGAGTTCATTCCATGTCTAAGC
16104161 ATACGGAGTT
Statistics
Matches: 280, Mismatches: 59, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 54 0.19
159 216 0.77
160 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
AGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGACCGAGGGTTGCGGCACCAAGACTGAC
AACACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGATTGACTCAGCG
CCCACACGCTCGTTTCATGGGTTGGCTT
Found at i:16104163 original size:26 final size:26
Alignment explanation
Indices: 16104133--16104185 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16104123 GTTGGCTTGG
16104133 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16104159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16104185 G
1 G
16104186 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16104465 original size:288 final size:289
Alignment explanation
Indices: 16103948--16104475 Score: 778
Period size: 288 Copynumber: 1.8 Consensus size: 289
16103938 TCAGTGCCCA
* *
16103948 CACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
1 CACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
* * *
16104013 CGAGGGTTGCGGCACCAGGATTGATAACACGCAGCGGGGGATCGCGCCGATCCTCAGCTTGCGCA
66 CGAGGGTTGCGGCACCAAGATTGATAACACGCAGCGGGGGACCGCGCCGATCCTCAGATTGCGCA
* * * * *
16104078 TTCTGCCTCTTCGATCGGCTTAGCACCCGCATGCTCGTTTCATGGGTTGGCTTGGGCATACGGAG
131 TTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAG
*
16104143 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGGAGGGTTAC
196 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACGGAGGGTTAC
16104208 GGTAGCAGGACTAGCAACAGGATTAGTGG
261 GGTAGCAGGACTAGCAACAGGATTAGTGG
* * *
16104237 CACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGAT
1 CACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
** * *
16104302 CGAGGGTTGCGGCAGGAAGATTGACT-ACATGTAG-GGGGGACCAG-GCCGATGCC-C-GAATTG
66 CGAGGGTTGCGGCACCAAGATTGA-TAACACGCAGCGGGGGACC-GCGCCGAT-CCTCAG-ATTG
* * * *
16104362 CGCATTCTGCCTCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTATGCATAT
127 CGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
16104427 GAAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGAT
192 GAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGAT
16104476 TTTTAGCCAC
Statistics
Matches: 212, Mismatches: 23, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
287 1 0.00
288 120 0.57
289 90 0.42
290 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (289 bp):
CACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC
CGAGGGTTGCGGCACCAAGATTGATAACACGCAGCGGGGGACCGCGCCGATCCTCAGATTGCGCA
TTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAG
TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACGGAGGGTTAC
GGTAGCAGGACTAGCAACAGGATTAGTGG
Found at i:16104472 original size:26 final size:26
Alignment explanation
Indices: 16104421--16104473 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16104411 GTTGGCTTAT
*
16104421 GCATATGAAGTTCATTCCATGTCTAA
1 GCATATGAAGTTCATTCCATGCCTAA
*
16104447 GCATATGGAGTTCATTCCCA-GCCTAA
1 GCATATGAAGTTCATT-CCATGCCTAA
16104473 G
1 G
16104474 ATTTTTAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCATGCCTAA
Found at i:16105168 original size:26 final size:26
Alignment explanation
Indices: 16105132--16105184 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16105122 GTTGACTTAG
*
16105132 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16105158 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16105184 G
1 G
16105185 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16105460 original size:159 final size:157
Alignment explanation
Indices: 16105158--16105659 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
16105148 CCCAGTCTAA
** * * ***
16105158 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACTGAATCGAGGGTTACAGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
16105221 TAGCGCGCAGGGGGGA-CCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCC-AGCCGATTGAG
64 TAGCACACAGAGGGGATCAG-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAG
*
16105284 CACCCGCACGCCCGTTTCATGGGTTGGCTTAG
127 CA-CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
16105316 GCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCCGGACCTAGGGTTGTGGCAGCGGGATCGTTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGATCGATA
* * * * * *
16105381 GCACGCAGAAGGGGATCAGGCCGATCCCTGGCCTGCGCATTATGCCTCTCCGATCGGCTAAGCAC
66 GCACACAG-AGGGGATCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* * *
16105446 CTGTACGCTCGTTTCGTGGGTTGACTTAG
130 C-GCACGCTCGTTTCATGGGTTGGCTTAG
** ** * *
16105475 GCATACAAAGTTCATTCCCA-GTCTAAGATCGAATCGAACCGAGGGTTGTGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * **
16105539 AGCACACAGAGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCTGACTGAGTGC
65 AGCACACAGAGGGGATCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* *
16105604 CGCACGCTCATTTCATGGGTTGGCTTTG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
* *
16105632 GCATATGGAGTTCATTCCATTTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16105660 ATATGGAGTT
Statistics
Matches: 273, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 41 0.15
158 101 0.37
159 122 0.45
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGATCGATA
GCACACAGAGGGGATCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16105682 original size:26 final size:26
Alignment explanation
Indices: 16105632--16105684 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16105622 GTTGGCTTTG
*
16105632 GCATATGGAGTTCATTCCATTTCTAA
1 GCATATGGAGTTCATTCCATATCTAA
16105658 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATGGAGTTCATT-CCATATCTAA
16105684 G
1 G
16105685 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATATCTAA
Found at i:16106051 original size:26 final size:26
Alignment explanation
Indices: 16105999--16106051 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16105989 GTTGACTTAG
*
16105999 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTATAA
* *
16106025 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCACTATAA
16106051 G
1 G
16106052 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTATAA
Found at i:16106102 original size:354 final size:358
Alignment explanation
Indices: 16105523--16106242 Score: 826
Period size: 354 Copynumber: 2.0 Consensus size: 358
16105513 CCGAGGGTTG
* ** * *
16105523 TGGCAGCAGGATCGATAGCACACAGAGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
1 TGGCAGCAGGATCGATAACACACAGAGGGGATCAGGCCGATCCCCAACTTACGCATTATGCCTCT
* * * * * * *
16105588 CTGGCTGACTGAGTGCCGCACGCTCATTTCATGGGTTGGCTTTGGCATATGGAGTTCATTCCATT
66 CGGGCTGACTGAGCGCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATC
* * * *
16105653 TCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCAGCAGTCAGAC
131 TCTAAGCATACGGAGTTCATTCCCAATATAAGATCAGACCAGACCGAAGGTT-----AGTCAG--
* * * *
16105718 CAGCAGAAGGATCGACAGCATGTAAAGGGGGACT-GAGTCGATCCCTGGCTTACGCATTCTGCCT
189 -AGCAGAAGGATCGACAGCACGTAAAGGGGGACTAG-GCCGATCCCTGGCTTACACATTCTACCT
* * * *
16105782 CTCCGACTGGCTGAGCACCTGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATACC
252 CTCCGACCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATACC
* * *
16105847 ATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGCCAGCAGGAT
317 ATGTCTAAGCCCCAGCAGGACCAAGGGTTGTGCCAGCAGGAT
* * * *
16105889 TGGCAGCGGGATCGGTAACACGCAGAGGGGATC-GAGCTGATCCCCAACTTACGCATTATGCCTC
1 TGGCAGCAGGATCGATAACACACAGAGGGGATCAG-GCCGATCCCCAACTTACGCATTATGCCTC
* * *
16105953 TCGGGCTGGCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
65 TCGGGCTGACTGAGCG-CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCC
* * **
16106018 A-CTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCGGACTGGACCGAAGGTT-G-C-G-GCA
128 ATCTCTAAGCATACGGAGTTCATTCCCAATATAAGATCAGACCAGACCGAAGGTTAGTCAGAGCA
* * * * *
16106078 GTAGGATCGACAGTACG-CAAGGGGGACTAGGCCGATCCCTGGCTTGCACATTCTACCTCTCTGA
193 GAAGGATCGACAGCACGTAAAGGGGGACTAGGCCGATCCCTGGCTTACACATTCTACCTCTCCGA
* * * * *
16106142 CCGGTTGAGCCCCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
258 CCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCT
* *
16106207 AAGCCCCAGCAGGACCAAGGGTTGTGGCAGCGGGAT
323 AAGCCCCAGCAGGACCAAGGGTTGTGCCAGCAGGAT
16106243 CGACAGCACG
Statistics
Matches: 300, Mismatches: 50, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
354 126 0.42
355 18 0.06
359 1 0.00
360 1 0.00
361 1 0.00
365 1 0.00
366 66 0.22
367 83 0.28
368 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (358 bp):
TGGCAGCAGGATCGATAACACACAGAGGGGATCAGGCCGATCCCCAACTTACGCATTATGCCTCT
CGGGCTGACTGAGCGCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATC
TCTAAGCATACGGAGTTCATTCCCAATATAAGATCAGACCAGACCGAAGGTTAGTCAGAGCAGAA
GGATCGACAGCACGTAAAGGGGGACTAGGCCGATCCCTGGCTTACACATTCTACCTCTCCGACCG
GCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAAG
CCCCAGCAGGACCAAGGGTTGTGCCAGCAGGAT
Found at i:16106962 original size:26 final size:26
Alignment explanation
Indices: 16106933--16106985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16106923 CCGGTCTGAT
16106933 CTTAGACTATGAATGAACTCTGTATG
1 CTTAGACTATGAATGAACTCTGTATG
*
16106959 CTTAGACTATGGATGAACTCTGTATG
1 CTTAGACTATGAATGAACTCTGTATG
16106985 C
1 C
16106986 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCTGTATG
Found at i:16107705 original size:26 final size:26
Alignment explanation
Indices: 16107667--16107719 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16107657 GGCTCAAAAT
*
16107667 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16107693 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
16107719 C
1 C
16107720 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16108117 original size:25 final size:26
Alignment explanation
Indices: 16108077--16108128 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16108067 CCGGTTCAAT
16108077 CTTAGACTAGGAATGAACT-CGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16108102 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16108128 C
1 C
16108129 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16108471 original size:26 final size:26
Alignment explanation
Indices: 16108442--16108494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16108432 GCGATCCGAT
*
16108442 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
16108468 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
16108494 C
1 C
16108495 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:16108676 original size:197 final size:195
Alignment explanation
Indices: 16108272--16108849 Score: 718
Period size: 197 Copynumber: 3.0 Consensus size: 195
16108262 TCCGACTGGG
* * * * * * *
16108272 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACAAGCGTACAGATGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * *
16108337 CCGGTCGGAGAGGCAGAATGCGAAAG-CTGGGGATCAGCCCAATCCCCCTGCGTGCTGTCGATCT
66 CCGGTCGGAGAGGCAGAATGCGTAAGTC-GAGGATCAGCCCAATCCCCCTGCGTGCTGTCGATCC
* * *
16108401 TGCTGCTGGTCATGCTGTAGCAACCCTCAGTGCGATCCGATCTTAGACTGGGAATGAACTCCGTA
130 TGCTACTGGTCATGCTGCAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
16108466 T
195 T
16108467 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* ****
16108532 CCGGTCGGAGAGGTAGAATGCGTAAGTCGAGGATCAGCTTGGTCCCCCCCTGCGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCAAT--CCCCCTGCGTGCTGTCGATC
* * *
16108597 CTGCTACTGGTCATGCTGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGG-ATGAACTCCG
129 CTGCTACTGGTCATGCTGCAGCAACCCTCAGTCCGATCCGATCTTAGACT-GGGAATGAACTCCG
16108661 TAT
193 TAT
* * * *
16108664 GCTTACACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGGGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * *
16108729 CCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGA-CCGACCCGATCCCCCCTGTGTGCTATCGA--
66 CCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGATCAG-CCCAAT-CCCCCTGCGTGCTGTCGATC
* *
16108791 -T-C--CT-G-C-TGCT---GCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGT
129 CTGCTACTGGTCATGCTGCAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
16108846 AT
194 AT
16108848 GC
1 GC
16108850 CTAAGTCAAC
Statistics
Matches: 344, Mismatches: 33, Indels: 23
0.86 0.08 0.06
Matches are distributed among these distances:
183 3 0.01
184 44 0.13
187 4 0.01
188 1 0.00
189 1 0.00
190 2 0.01
192 1 0.00
193 1 0.00
195 92 0.27
196 20 0.06
197 172 0.50
198 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
CCGGTCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCAATCCCCCTGCGTGCTGTCGATCCT
GCTACTGGTCATGCTGCAGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16108964 original size:158 final size:155
Alignment explanation
Indices: 16108673--16109166 Score: 390
Period size: 158 Copynumber: 3.1 Consensus size: 155
16108663 TGCTTACACA
* * ** * * * *
16108673 TGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGGGGGCGCTCAACCG-GTCGG
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACT-GG
* * * * * ** *
16108737 AGAGGCAGAATGCGTAAGTC-GAGGACCG-ACCCGATCCCCCCTGTGTGCTATCGATCCTGCTGC
65 AGAGGCAGAATGCGCAA-ACAGA-GATCGAACCC-AT-CCCCCTGTGTGCTACCGGTCCCACTAC
**
16108800 TGCAACCCTCGGTCCGATCTGATCTTAGAC
126 CACAACCCTCGGTCCGATCTGATCTTAGAC
* * * *
16108830 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AGTGTGCGGGCACTGAGCCGACTGG
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACTGG
* * * *
16108894 AGAGGCATAATGCGCAAGTCAGGGATC-AACCCAGTCCCCCTCTGTGTGCTGCCGGTCCCACTAC
65 AGAGGCAGAATGCGCAA-ACAGAGATCGAACCCA-T-CCCC-CTGTGTGCTACCGGTCCCACTAC
* **
16108958 CACAACCCTTGGTCCGAT-TGGGGCTTAGAC
126 CACAACCCTCGGTCCGATCT-GATCTTAGAC
* * ** * *
16108988 ATGGAATGAACTCTC-TATGCCTAAGCCAACCCACAAAACGGGCGTGTGGGTGCTCAGCTGGCTG
1 -TGGAATGAACTC-CGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACTG
* * * * ** * **
16109052 GAGAGGCAGAATGCGTAAACCGAGATCGAACCGATCCCCCTGTGTGCTATCGGTCCTGCTGCCGT
64 GAGAGGCAGAATGCGCAAACAGAGATCGAACCCATCCCCCTGTGTGCTACCGGTCCCACTACCAC
* **
16109117 AACCCTCGGTCCGATCCGATCTTAGGT
129 AACCCTCGGTCCGATCTGATCTTAGAC
16109144 TAGGAATGAACTCCGTATGCCTA
1 T-GGAATGAACTCCGTATGCCTA
16109167 GACTGGGGAT
Statistics
Matches: 269, Mismatches: 54, Indels: 29
0.76 0.15 0.08
Matches are distributed among these distances:
155 2 0.01
156 59 0.22
157 54 0.20
158 115 0.43
159 39 0.14
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGACTGGA
GAGGCAGAATGCGCAAACAGAGATCGAACCCATCCCCCTGTGTGCTACCGGTCCCACTACCACAA
CCCTCGGTCCGATCTGATCTTAGAC
Found at i:16109890 original size:26 final size:26
Alignment explanation
Indices: 16109859--16109911 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109849 GGCTCAAAAT
*
16109859 CTTAGACA-TGTAATGAACTTCGTATG
1 CTTAGACATTG-AATGAACTCCGTATG
16109885 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATTGAATGAACTCCGTATG
16109911 C
1 C
16109912 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
CTTAGACATTGAATGAACTCCGTATG
Found at i:16110249 original size:159 final size:158
Alignment explanation
Indices: 16110029--16110328 Score: 411
Period size: 159 Copynumber: 1.9 Consensus size: 158
16110019 TCTTAGACTA
** * *
16110029 GGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCTGGCCGAAG
1 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCGAAG
* * * * *
16110094 AGGCATAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAATCCCCC-CTACGTGCTATCGATCCCGCTGCCAC
16110159 AACCCTCGGTCCAGCTGGGGCATAAACAT
130 AACCCTCGGTCCAGCTGGGGCATAAACAT
* * * *
16110188 GGAATGAACTCCCTATGCCTAAGCCAACCCCCGAAATGGGCGTGCGGGCGCTCAGCTGGCCGGAG
1 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCGAAG
* ** ** * *
16110253 AGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTACGTGCTATCGATCTTGTTGCCGCA
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCCAATCCCCCCTACGTGCTATCGATCCCGCTGCCACA
16110318 ACCCTCGGTCC
131 ACCCTCGGTCC
16110329 GATCCAATCT
Statistics
Matches: 121, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
158 31 0.26
159 90 0.74
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCGAAG
AGGCAGAATGCGCAAGCCAGGGATCGGCCCAATCCCCCCTACGTGCTATCGATCCCGCTGCCACA
ACCCTCGGTCCAGCTGGGGCATAAACAT
Found at i:16110369 original size:26 final size:26
Alignment explanation
Indices: 16110340--16110467 Score: 150
Period size: 26 Copynumber: 4.9 Consensus size: 26
16110330 ATCCAATCTA
16110340 AGACTTGGAATGAACTCCGTATGCTT
1 AGACTTGGAATGAACTCCGTATGCTT
* *
16110366 AGACTGGGGATGAACTCCGTATGCTT
1 AGACTTGGAATGAACTCCGTATGCTT
* ** *
16110392 AGAC-TAGAGATGAACTCTTTATGCCT
1 AGACTTGGA-ATGAACTCCGTATGCTT
* *
16110418 AGACTAGGAATGAACTCTGTATGCTT
1 AGACTTGGAATGAACTCCGTATGCTT
* *
16110444 AGCCATGGAATGAACTCCGTATGC
1 AGACTTGGAATGAACTCCGTATGC
16110468 CTAAGCCAAC
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
25 1 0.01
26 81 0.96
27 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
AGACTTGGAATGAACTCCGTATGCTT
Found at i:16110951 original size:26 final size:26
Alignment explanation
Indices: 16110915--16110967 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16110905 CCAGTCTGAT
* *
16110915 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
*
16110941 CTTAAATTGGGGATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
16110967 C
1 C
16110968 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCGTATG
Found at i:16112018 original size:159 final size:159
Alignment explanation
Indices: 16111663--16112199 Score: 616
Period size: 158 Copynumber: 3.4 Consensus size: 159
16111653 TCCTCCATCT
* * * * **
16111663 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCTAACCTACGAAACGAGCGTCCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
16111728 CCGGCCAGAGAGGCAAAATGCACAAGCTGGGGATCGGCCTGGT-CCCCTCTGCGTGCTGTCGAT-
66 CCGGTCAGAGAGGCAAAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATC
* * *
16111791 CCTGCTGCCACAACACTCGGTCCGG-TCCGA
131 CCT-CTGCCACAACCCTCGGTCCGGCT-AGG
* ** * * * * *
16111821 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTTAACCCACGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * * *
16111885 GCCGGTCGGAGAGGCATAATACGCAAACTGAGGATCAGCCTGGTCCCCCTTTGCGTGTTGCCGGT
65 GCCGGTCAGAGAGGCAAAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGAT
* *
16111950 CCCTCTACCACAACCCTCGGTCTGGCTAGG
130 CCCTCTGCCACAACCCTCGGTCCGGCTAGG
* *
16111980 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
16112045 CCAGTCAGAGAGGCAAAATGCGTAAGCCGGGGATCAGCCCGGTCCCCC-CAGCGTGCTGTCGATC
66 CCGGTCAGAGAGGCAAAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATC
* *
16112109 CCACTGCCACAACCCTCGGTCCGGCTATG
131 CCTCTGCCACAACCCTCGGTCCGGCTAGG
* * * *
16112138 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGAGTGTGCGGGCACT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACT
16112200 GAATGAACTC
Statistics
Matches: 314, Mismatches: 60, Indels: 10
0.82 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 181 0.58
159 127 0.40
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGTCAGAGAGGCAAAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATC
CCTCTGCCACAACCCTCGGTCCGGCTAGG
Found at i:16112208 original size:51 final size:51
Alignment explanation
Indices: 16112149--16112247 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
16112139 CTTAGACATG
* *
16112149 GAATGAACTCCCTATGACTAAGCCAACCCATGAAACGAGTGTGCGGGCACT
1 GAATGAACTCCATATGACGAAGCCAACCCATGAAACGAGTGTGCGGGCACT
* *
16112200 GAATGAACTCCATATGCCGAGGCCAACCCATGAAACGAGTGTGCGGGC
1 GAATGAACTCCATATGACGAAGCCAACCCATGAAACGAGTGTGCGGGC
16112248 GCTCAACTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.30, C:0.27, G:0.26, T:0.16
Consensus pattern (51 bp):
GAATGAACTCCATATGACGAAGCCAACCCATGAAACGAGTGTGCGGGCACT
Found at i:16112387 original size:26 final size:26
Alignment explanation
Indices: 16112358--16112410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16112348 CCGATCCGAT
16112358 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16112384 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16112410 C
1 C
16112411 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16112691 original size:196 final size:195
Alignment explanation
Indices: 16112305--16112713 Score: 533
Period size: 196 Copynumber: 2.1 Consensus size: 195
16112295 GTCCCCCTGC
*
16112305 GTGCTGTCGATCCTG-TGCTGGTCCTGCTGTCGTAACCCTCAGTCCGATCCGATCTTAGACTGGG
1 GTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCG-AACCCTAAGTCCGATCCGATCTTAGACTGGG
16112369 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACAGGC
65 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACAGGC
*** * **
16112434 GTGTGGGCTCTCAGCTGGCCGGAGAGGCAGAATGTGCAAGTCAAGGATCAGCCCAATCCCCCCTA
130 GTGTGGGCTCTCAGCCAACCAGAGAGGCAGAATGCACAAGTCAAGGATCAGCCCAATCCCCCCTA
16112499 A
195 A
**
16112500 GTGCTGTCGATCCTGCTGCTGGTCCTGCTGCTAC-AACCCTAAGTCC-AGTTTGATCTTAGACTG
1 GTGCTGTCGATCCTGCTGCTGGTCCTGCTG-T-CGAACCCTAAGTCCGA-TCCGATCTTAGACTG
* * *
16112563 GGAATGAACTCCGTATGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAC-G
63 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACAG
* *** * *
16112627 AGCGTGTGGG-TGCTCAGCCAACCAGAGAGGTAGAATGCACAAGTTGGGGATC-GATCCGATCCC
128 -GCGTGTGGGCT-CTCAGCCAACCAGAGAGGCAGAATGCACAAGTCAAGGATCAG-CCCAATCCC
**
16112690 CCCTGC
190 CCCTAA
16112696 GTGCTGTCGATCCTGCTG
1 GTGCTGTCGATCCTGCTG
16112714 TCACAATCCT
Statistics
Matches: 187, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
195 19 0.10
196 166 0.89
197 1 0.01
198 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (195 bp):
GTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGAACCCTAAGTCCGATCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACAGGCG
TGTGGGCTCTCAGCCAACCAGAGAGGCAGAATGCACAAGTCAAGGATCAGCCCAATCCCCCCTAA
Found at i:16112966 original size:26 final size:26
Alignment explanation
Indices: 16112937--16112990 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16112927 GCCAACTGGG
*
16112937 GCTTAGAC-TGGGAATGAACTCTGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
16112963 GCTTAGACATGGAATGAACTCCGTAT
1 GCTTAGACATGGAATGAACTCCGTAT
16112989 GC
1 GC
16112991 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCGTAT
Found at i:16114036 original size:318 final size:315
Alignment explanation
Indices: 16113481--16114251 Score: 872
Period size: 318 Copynumber: 2.4 Consensus size: 315
16113471 TCGATCTGAT
* * * *
16113481 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAAGCGTGCAGGCGCTTAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAG-GGCGTGCGGGCGCTCAG
* * * * *
16113545 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCCCCCCTGTGTGCTATCGATC
64 CGA-CCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGT-CCCCCCTATGTGCTATCGATC
* * * * * *
16113610 CTACTATCGTAACCGTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTGTGCCTAAGTCA
127 CTGCTACCGTAACCGTCGATCCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCA
* * * * * **
16113675 ACCCACAAAACGAGTGTGAGGGTGCTAGGCCGACCGGAGAGGCATAATGCGTAAGCCTGGGATCG
192 ACCCACAAAACGAGCGTCAGGGTGCTAGGCCGACCGAAGAGGCAAAATGCGCAAGCCAAGGATC-
* *** *
16113740 GCC-TGGTCCCTCTCTGCATGTTACCGGTTTTGCTGCCACAACCC-TCGATCTAGCTGGGG
256 GCCTTGGTCCCTCTCTGCATGCTACCGGTCCCGCTGCCACAACCCTTC-ATCCAGCTGGGG
* * * *
16113799 CTTAGACATGGAATGAACTCCCTACGCCTAAGCGAACCCACGAAATGGGCTTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGCGCTCAG-
* * * * * *
16113864 CGACCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGGTCCACCCCTACGTGCTATTGATCC
64 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCC-CCCCTATGTGCTATCGATCC
* * * *
16113929 TGCTGCCGTAACCTTCGATCTGGT-TCGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGTCA
128 TGCTACCGTAACCGTCGATCCGGTCT-GATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCA
* *
16113993 ACCCACGAAATGAGCGTCCA-GGTGCT-GAGCC-AGCCGAAGAGGCAAAATGCGCAAGCCAAGGA
192 ACCCACAAAACGAGCGT-CAGGGTGCTAG-GCCGA-CCGAAGAGGCAAAATGCGCAAGCCAAGGA
*
16114055 TCGCCTTGGTCCCTCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTTCATCCAGCTGGGG
254 TCGCCTTGGTCCCTCTCTGCATGCTACCGGTCCCGCTGCCACAACCCTTCATCCAGCTGGGG
* * * * *
16114117 CTTAGACATGGAATGAACTCCCTATGCCAAAACCAACCCATGAAACGGGCGTGCGGACGTTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGCGCTCAG-
* * * * *
16114182 CGACCAAAGAGGGAGAATGCACAAGTCGGGGATCAACCCGGTCCCCTCTATGTGCTATCGATCCT
64 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTATGTGCTATCGATCCT
16114247 GCTAC
129 GCTAC
16114252 TGGTCCTGCT
Statistics
Matches: 376, Mismatches: 67, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
317 30 0.08
318 339 0.90
319 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGGCGTGCGGGCGCTCAGCG
ACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTATGTGCTATCGATCCTGC
TACCGTAACCGTCGATCCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCC
ACAAAACGAGCGTCAGGGTGCTAGGCCGACCGAAGAGGCAAAATGCGCAAGCCAAGGATCGCCTT
GGTCCCTCTCTGCATGCTACCGGTCCCGCTGCCACAACCCTTCATCCAGCTGGGG
Found at i:16114201 original size:159 final size:158
Alignment explanation
Indices: 16113640--16114206 Score: 477
Period size: 159 Copynumber: 3.6 Consensus size: 158
16113630 CCGGTCTGAT
* * * * * * * * *
16113640 CTTAGAC-TGGGAATGAACTTCGTGTGCCTAAGTCAACCCACAAAACGAGTGTGAGGGTGCT-AG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTG-CGGTGCTCA-
* * * * * *
16113703 GCCGACCGGAGAGGCATAATGCGTAAGCCTGGGATCGGCCTGGTCCCTCTCTGCATGTTACCGGT
63 GCCGACCGAAGAGGCAGAATGCGCAAGCC-AGGATCGGCCTGGTCCCTCTCTGCGTGCTACCGGT
**
16113768 TTTGCTGCCACAACCC-TCGATCTAGCTGGGG
127 CCTGCTGCCACAACCCTTCGATCTAGCTGGGG
* * * *
16113799 CTTAGACATGGAATGAACTCCCTACGCCTAAGCGAACCCACGAAATGGGCTTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGC-GGTGCTCAGC
* * * ** *
16113864 CGACCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGGTCCAC-CCCTACGTGCTATTGATC
65 CGACCGAAGAGGCAGAATGCGCAAGCCAG-GATCGGCCTGGTCC-CTCTCTGCGTGCTACCGGTC
** * * * **
16113928 CTGCTGCCGTAA-CCTTCGATCTGGTTCGAT
128 CTGCTGCCACAACCCTTCGATCTAGCTGGGG
* * * * * * *
16113958 CTTAGA-TTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTCCAGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGC-GGTGCTCAG
*
16114022 CC-AGCCGAAGAGGCAAAATGCGCAAGCCAAGGATC-GCCTTGGTCCCTCTCTGCGTGCTACCGG
64 CCGA-CCGAAGAGGCAGAATGCGCAAGCC-AGGATCGGCC-TGGTCCCTCTCTGCGTGCTACCGG
* *
16114085 TCCCGCTGCCACAACCCTTC-ATCCAGCTGGGG
126 TCCTGCTGCCACAACCCTTCGATCTAGCTGGGG
* * * * * *
16114117 CTTAGACATGGAATGAACTCCCTATGCCAAAACCAACCCATGAAACGGGCGTGCGGACGTTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGG-TGCTCAGC
* * *
16114182 CGACCAAAGAGGGAGAATGCACAAG
65 CGACCGAAGAGGCAGAATGCGCAAG
16114207 TCGGGGATCA
Statistics
Matches: 314, Mismatches: 79, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
158 11 0.04
159 291 0.93
160 12 0.04
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGTGCTCAGCC
GACCGAAGAGGCAGAATGCGCAAGCCAGGATCGGCCTGGTCCCTCTCTGCGTGCTACCGGTCCTG
CTGCCACAACCCTTCGATCTAGCTGGGG
Found at i:16115730 original size:26 final size:26
Alignment explanation
Indices: 16115694--16115746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16115684 CCAGTCTGAT
*
16115694 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
16115720 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
16115746 C
1 C
16115747 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16116061 original size:26 final size:26
Alignment explanation
Indices: 16116023--16116075 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16116013 CGGTCCCGAT
16116023 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16116049 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
16116075 C
1 C
16116076 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16116226 original size:181 final size:183
Alignment explanation
Indices: 16115901--16116230 Score: 418
Period size: 185 Copynumber: 1.8 Consensus size: 183
16115891 AATCCTGCTA
* *
16115901 CCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGAAAGCTGGGGATCAGC
1 CCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAAAATGCGAAAGCTAGGGATCAGC
* * * *
16115966 CCGGTCCCCCCTACGTGCTGCTGGTCCTACAGTTGTAACCCTCGATCCGGTCCCGATCTTAGACT
66 CCGGTCCCCCCTACGTGCTGCTGATCCTACA--TGCAAACCTCGATCCGGTCCCGATCTTACACT
*
16116031 GGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
129 AGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * * * * *
16116086 CCACGAAATGAGCGTGTGGGCGTTCAGCCGGTCGGAG-GGCAAAATGCG-TAGCTAGGGATCGGC
1 CCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAAAATGCGAAAGCTAGGGATCAGC
* * *
16116149 CCGGTCCCTCCCTGCGTGCTG-TCGATCCTAC-TGCACAACCTCGATCTGGT-CTGATCTTACAC
66 CCGGTCCC-CCCTACGTGCTGCT-GATCCTACATGCA-AACCTCGATCCGGTCCCGATCTTACAC
*
16116211 TAGGAATTAACTCTGTATGC
128 TAGGAATGAACTCTGTATGC
16116231 CTAAGTCAAC
Statistics
Matches: 124, Mismatches: 18, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
181 31 0.25
182 12 0.10
183 21 0.17
184 28 0.23
185 32 0.26
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (183 bp):
CCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAAAATGCGAAAGCTAGGGATCAGC
CCGGTCCCCCCTACGTGCTGCTGATCCTACATGCAAACCTCGATCCGGTCCCGATCTTACACTAG
GAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
Found at i:16116407 original size:158 final size:155
Alignment explanation
Indices: 16116048--16116414 Score: 386
Period size: 155 Copynumber: 2.3 Consensus size: 155
16116038 AACTCTGTAT
* * * *
16116048 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCAA
* * * *
16116113 CCGGTCGGAGGGCAAAATGCGTAGCTAGGGATCGGCCCGGTCCCTCCCTGCGTGCTGTCGATCCT
66 CCGGTCGGAGGGCAAAATGCGAAGCCAAGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGATCCT
16116178 ACTGCACAACCTCGATCTGGTCTGA
131 ACTGCACAACCTCGATCTGGTCTGA
* * * * * *
16116203 TCTTACAC-TAGGAATTAACTCTGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGAGCG-TGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCA
* * * *
16116266 ACCGG-CTGGAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGGTCCCTCTCTATGTGCTGTCGA
65 ACCGGTC-GGAG-GGCAAAATGCG-AAGCCAAGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGA
* * *
16116330 T-CTCGCTGCCACCACCCTCTG-TCTGG-CTGGG
127 TCCT-ACTG-CA-CAACCTC-GATCTGGTCT-GA
* * * *
16116361 GCTTAGACATGGAATGAACTATCTATGCCTGAGCCAACCCACGAAACGGGCGTG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTG
16116415 TGGGCACTCA
Statistics
Matches: 172, Mismatches: 30, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
153 1 0.01
154 11 0.06
155 62 0.36
156 37 0.22
157 4 0.02
158 55 0.32
159 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCAA
CCGGTCGGAGGGCAAAATGCGAAGCCAAGGATCGGCCCGGTCCCTCCCTACGTGCTGTCGATCCT
ACTGCACAACCTCGATCTGGTCTGA
Found at i:16117621 original size:26 final size:26
Alignment explanation
Indices: 16117585--16117637 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16117575 CCTATCTGAT
16117585 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16117611 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16117637 C
1 C
16117638 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16118600 original size:26 final size:26
Alignment explanation
Indices: 16118571--16118623 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16118561 TCCGTCTGAT
* *
16118571 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
16118597 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
16118623 C
1 C
16118624 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:16119081 original size:26 final size:26
Alignment explanation
Indices: 16119045--16119097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16119035 CTGGTCTGAT
16119045 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16119071 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16119097 C
1 C
16119098 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16119791 original size:26 final size:25
Alignment explanation
Indices: 16119752--16119803 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16119742 GGCTCAAACT
*
16119752 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
16119777 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
16119803 C
1 C
16119804 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:16120557 original size:159 final size:159
Alignment explanation
Indices: 16120268--16120558 Score: 422
Period size: 159 Copynumber: 1.8 Consensus size: 159
16120258 CCTGCTACTG
* *
16120268 CAACCCTCAGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAA
1 CAACCCTCAGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
* * *
16120333 ACGAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATCC
66 ACAAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAATCC
16120398 CTGCCTATCTGCTATCGATATTGCTGCCA
131 CTGCCTATCTGCTATCGATATTGCTGCCA
* ** *
16120427 CAACCCTCGATTC-GATCTGATCTTAGATTGGGAATGAACTTTGTATGCCTAAGTCAACCCACAA
1 CAACCCTC-AGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* *** * * *
16120491 AACAAGCGTACGGGCGTTGAGCCGGTCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCAATC
65 AACAAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAATC
16120556 CCT
130 CCT
16120559 CTCTGCGTGA
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
159 112 0.97
160 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
CAACCCTCAGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
ACAAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAATCC
CTGCCTATCTGCTATCGATATTGCTGCCA
Found at i:16120587 original size:159 final size:158
Alignment explanation
Indices: 16120268--16120710 Score: 405
Period size: 159 Copynumber: 2.8 Consensus size: 158
16120258 CCTGCTACTG
* *
16120268 CAACCCTC-AGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAGCCCACGA
1 CAACCCTCGAGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * *
16120332 AACGAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATTGGCCCGATC
66 AACAAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAATC
** *
16120397 CCTGCCTATCTGCTATCGATATTGCTGCCA
131 CCT-CC-ATCTGCTATCGATACCGCTACCA
* ** *
16120427 CAACCCTCGATTC-GATCTGATCTTAGATTGGGAATGAACTTTGTATGCCTAAGTCAACCCACAA
1 CAACCCTCGAGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* *** * * *
16120491 AACAAGCGTACGGGCGTTGAGCCGGTCGGAGAGGCATAATGTGCAAGCCAGGGATCGGCCCAATC
66 AACAAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAATC
*
16120556 CCT-C-TCTGCGTGATGCCGATCCCGCTACCA
131 CCTCCATCTGC-T-AT--CGATACCGCTACCA
* * * ** * * *
16120586 CAGCCCTCG-GTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CAACCCTCGAGTCTGATCT-GATCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * ** ** * ** * * *
16120648 GACATGAGCGTGCAGGCGCTTAGCCAATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCC
64 AAAACAAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCC
16120711 GGTCCCCCCT
Statistics
Matches: 233, Mismatches: 43, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
155 5 0.02
156 1 0.00
157 3 0.01
158 3 0.01
159 217 0.93
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CAACCCTCGAGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
AACAAGCGCACGGGCGCACAGCCAGTCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGCCCAATC
CCTCCATCTGCTATCGATACCGCTACCA
Found at i:16121524 original size:26 final size:26
Alignment explanation
Indices: 16121487--16121538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16121477 GCTCAAACTT
16121487 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16121513 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16121539 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16121705 original size:26 final size:26
Alignment explanation
Indices: 16121669--16121721 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16121659 CCAATCTGAT
16121669 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16121695 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16121721 C
1 C
16121722 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16121916 original size:26 final size:26
Alignment explanation
Indices: 16121878--16121930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16121868 CCAGTCCGAT
*
16121878 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16121904 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16121930 C
1 C
16121931 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16122399 original size:158 final size:155
Alignment explanation
Indices: 16121904--16122405 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 155
16121894 ACTCTGTATG
* *
16121904 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGC-GTACGGACGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCTGTAGGGA-GCTCAG
* *
16121968 CCTACTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCC-AGTCCCCCCTACGTGCTGTCGATC
65 -CGAC-GGAGAGGCAGAATGCGTAAG-CGGGGATCGACCCGA-TCCCCCCTACGTGCTGCCGATC
*
16122032 CTGCTGCCACAACCCTCGGTCTGGTCCGAT
126 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * * * * *
16122062 CTTAGA-TTGGGAATGAGCTCAGTATGCCTAAGTCAACCCATGAAATGAGC-GTTCGGGCA-TTA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCTG-TAGGG-AGCTC
* * * * * *
16122124 AGCTGGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGA
63 AGC--GACGGAGAGGCAGAATGCGTAAGC-GGGGATCGACCCGATCCCCC-CTACGTGCTGCCGA
* * **
16122189 T-TTCACTGCCACAACCCTCGGTCTGG-CTAGGG
124 TCCT-GCTGCCACAACCCTCGGTCTGGTCT-GAT
* * *
16122221 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGT-GGGAGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGC-TGTAGGGAGCTCAG
* * *
16122285 TCGATCGGAGAGGCAGAATGCGTAAGTCGAGAATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
65 -CGA-CGGAGAGGCAGAATGCGTAAG-CGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
* * *
16122350 TGTTGCCACAACCCTCAGTCCGGTCTGAT
127 TGCTGCCACAACCCTCGGTCTGGTCTGAT
*
16122379 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16122406 ATAGACTGGG
Statistics
Matches: 275, Mismatches: 49, Indels: 40
0.76 0.13 0.11
Matches are distributed among these distances:
157 4 0.01
158 141 0.51
159 124 0.45
160 5 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCTGTAGGGAGCTCAGC
GACGGAGAGGCAGAATGCGTAAGCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCCTGCT
GCCACAACCCTCGGTCTGGTCTGAT
Found at i:16122768 original size:26 final size:26
Alignment explanation
Indices: 16122739--16122791 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16122729 CCGGTCTGAT
*
16122739 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16122765 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16122791 C
1 C
16122792 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16123332 original size:26 final size:26
Alignment explanation
Indices: 16123294--16123343 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16123284 GGCTCAAAAT
16123294 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
16123320 CTTAGAC-GTGGAATGAACTCCGTA
1 CTTAGACTG-GGAATGAACTCCGTA
16123344 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:16123519 original size:26 final size:26
Alignment explanation
Indices: 16123480--16123529 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16123470 GGTCACATCC
16123480 TAGACTGGGAATGAACTCCGTATGTT
1 TAGACTGGGAATGAACTCCGTATGTT
* *
16123506 TAGACTGGGGATGAACTTCGTATG
1 TAGACTGGGAATGAACTCCGTATG
16123530 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTT
Found at i:16123614 original size:184 final size:184
Alignment explanation
Indices: 16123296--16123640 Score: 462
Period size: 184 Copynumber: 1.9 Consensus size: 184
16123286 CTCAAAATCT
16123296 TAGACTGGGAATGAACTCCGTAAGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCGTAAGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * *** * **
16123361 GAAACGAGCGTGCGGGCGCTCAACCGGTTGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGG
66 AAAACGAACGTACGGGCGCCCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGG
* *
16123426 TCCCCCCTGTGA-GCTATCGATCCTGCTACTGCAACCCTCAGTCTGGTCACATCC
131 TCCCCCCTG-CATGCTACCGATCCTGCTACTGCAACCCTCAGTCTGGTCACATCC
* * * * *
16123480 TAGACTGGGAATGAACTCCGTATGTTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCA
1 TAGACTGGGAATGAACTCCGTAAGCTTAGACGT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * *
16123544 CAAAACGAACGTACGGGCGCCCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATCAA-CTC
65 CAAAACGAACGTACGGGCGCCCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAACCT-
16123608 GGTCCCCCCTGCATGCTACCGATCCTGCTACTG
129 GGTCCCCCCTGCATGCTACCGATCCTGCTACTG
16123641 GTCCTACTGT
Statistics
Matches: 138, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
183 4 0.03
184 134 0.97
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (184 bp):
TAGACTGGGAATGAACTCCGTAAGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCAC
AAAACGAACGTACGGGCGCCCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGG
TCCCCCCTGCATGCTACCGATCCTGCTACTGCAACCCTCAGTCTGGTCACATCC
Found at i:16123810 original size:196 final size:196
Alignment explanation
Indices: 16123457--16123832 Score: 454
Period size: 196 Copynumber: 1.9 Consensus size: 196
16123447 CCTGCTACTG
* * * *
16123457 CAACCCTCAGTCTGGTCACATCCTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGGATGAAC
1 CAACCCTCAGTCCGGTCACATCCTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
16123522 TTCGTATGCCTAAGTCAACCCACAAAACGAACGTACGGGCGCCCAGCCGACCGGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACAAAACGAACGCACGGGCGCCCAGCCGACCGGAAAAGCAGAAT
*
16123587 GCGCAAGCTGAGGATCAACTCGGTCCCCCCTGCATGCTACCGATCCTGCTACTGGTCCTACTGTC
131 GCACAAGCTGAGGATCAACTCGGTCCCCCCTGCATGCTACCGATCCTGCTACTGGTCCTACTGTC
16123652 A
196 A
* * * *
16123653 CAACCCTCGGTCCGGTC-CGATCTTAGACTAGGAATGAACTCCTTCTGCTTAGACAT-GGAATGA
1 CAACCCTCAGTCCGGTCAC-ATCCTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATGA
* * * * * * *
16123716 ACTCCTTATTCCTAAGCCAACCCACAAAATGAGCGCATGTGCGCTCAGCCGACCGGAAAAGCAGA
64 ACTCCGTATGCCTAAGCCAACCCACAAAACGAACGCACGGGCGCCCAGCCGACCGGAAAAGCAGA
* * * * *
16123781 ATGCATAAGCTTG-GGA-CTAGCTTGGTCCCCCCTGCGTGCTATCGATCCTGCT
129 ATGCACAAGC-TGAGGATC-AACTCGGTCCCCCCTGCATGCTACCGATCCTGCT
16123833 GCCACAACCT
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
195 2 0.01
196 145 0.97
197 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.21
Consensus pattern (196 bp):
CAACCCTCAGTCCGGTCACATCCTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACAAAACGAACGCACGGGCGCCCAGCCGACCGGAAAAGCAGAAT
GCACAAGCTGAGGATCAACTCGGTCCCCCCTGCATGCTACCGATCCTGCTACTGGTCCTACTGTC
A
Found at i:16124249 original size:26 final size:26
Alignment explanation
Indices: 16124212--16124264 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16124202 TCGATCTGAT
*
16124212 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
16124238 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16124264 C
1 C
16124265 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16124815 original size:26 final size:26
Alignment explanation
Indices: 16124777--16124826 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16124767 GGCTCAAACT
*
16124777 CTTAGACTGGGAATGAACTTCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
16124803 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
16124827 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:16125274 original size:184 final size:182
Alignment explanation
Indices: 16124961--16125526 Score: 476
Period size: 196 Copynumber: 3.0 Consensus size: 182
16124951 TGTGGCTGGG
* ** ** **
16124961 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAC-AGGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGTGGGCACTC-
* * * * * * * *
16125025 ATC-GACCGAAGAGGTAGAATGCGCAAGC-CGAGGATCGGCCCGGTCCCCCCTGTGA-GCTGCCG
64 AGCAGACTGGAGAGGCAGAATGCGCAAGCTAG-GGATC-GACCGGTCCCCCCTG-CATGCTACCG
* ** *
16125087 ATCCTGCTACCACAACCCTCAGTCTAGTCACATCCTAGACTGGGAATGAACTCCATAT
126 ATCCTGCTGCCACAACCCTCAGTCCGGTC-CATCTTAGACTGGGAATGAACTCCATAT
* * * * * *
16125145 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACGCATGAAACGAGCGTGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCA
16125209 GCAGACTGGAGAGGCAGAATGCGCAAGCTAGGGATCGACTCGGTCCCCCCTGCATGCTACCGATC
65 GCAGACTGGAGAGGCAGAATGCGCAAGCTAGGGATCGAC-CGGTCCCCCCTGCATGCTACCGA--
* * * *
16125274 CTGCTGCTGGTCCTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCTT
127 -T-C--CT-G--CTGC---CACAACCCTCAGTCCGGTCC-ATCTTAGACTGGGAATGAACTCCAT
16125339 AT
181 AT
* * * * *
16125341 GCTTAGACATGGAATGAACTCCTTATGCCTACGCCAACCCACGAAATGAGTGTGTGTGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
* * * * * * * * *
16125406 CCGACTGGCGAGGCAGAATGCGTAAGCTTGGGACCGACCTGGTCCCCCCTACGTGCTATCAATCC
66 CAGACTGGAGAGGCAGAATGCGCAAGCTAGGGATCGACC-GGTCCCCCCTGCATGCTACCGATCC
* * *
16125471 TACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTGCCACAACCCTCAGTCCGGTC-CATCTTAGACTGGGAATGAACTCCATAT
16125525 GC
1 GC
16125527 CTAAGTCAAC
Statistics
Matches: 309, Mismatches: 51, Indels: 44
0.76 0.13 0.11
Matches are distributed among these distances:
183 6 0.02
184 140 0.45
185 2 0.01
187 5 0.02
188 1 0.00
190 4 0.01
191 1 0.00
192 1 0.00
193 4 0.01
195 2 0.01
196 142 0.46
197 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
CAGACTGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCGGTCCCCCCTGCATGCTACCGATCCT
GCTGCCACAACCCTCAGTCCGGTCCATCTTAGACTGGGAATGAACTCCATAT
Found at i:16125354 original size:26 final size:26
Alignment explanation
Indices: 16125316--16125368 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16125306 CCGGTCCAAT
16125316 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCTTATG
16125342 CTTAGAC-ATGGAATGAACTCCTTATG
1 CTTAGACTA-GGAATGAACTCCTTATG
16125368 C
1 C
16125369 CTACGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCTTATG
Found at i:16126932 original size:26 final size:26
Alignment explanation
Indices: 16126893--16126945 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16126883 CCGGTCCGAT
16126893 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGTGAATGAACTCTGTATG
16126919 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGTGAATGAACTCTGTATG
16126945 C
1 C
16126946 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCTGTATG
Found at i:16127218 original size:158 final size:158
Alignment explanation
Indices: 16126919--16127419 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 158
16126909 ACTCTGTATG
* * *
16126919 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGT-ACGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGA-GGGCACTCA
* * * ** * * * * * *
16126982 GCC-GATCGAAGAGGCAGAATACACAAGCTGGAGACCAACCCAGTCCCCCCTGCGTGCTATCAAT
64 GCCAG-CCGGAGAGGCAAAATACACAAGCCAGAGATCAGCCCGGTCCCCCCTGCATGCTACCGAT
* * * * **
16127046 CCTACTATCGCAACCCTTGGTTTGGTTCGAT
128 CCTGCTACCACAACCCTCGGTCCGGTTCGAT
* * ** * *
16127077 CTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGAGGGCACTCAGC
* * * * *
16127142 CAGCCGGAGAGGCATAATGCACAAGCCAGGGATCGGCCC-GTCTCCCTCTGCATGCTACCGATCC
66 CAGCCGGAGAGGCAAAATACACAAGCCAGAGATCAGCCCGGTC-CCCCCTGCATGCTACCGATCC
* ** * **
16127206 TGCTGCCACAACCCTCGGTCCGACTGGCG
130 TGCTACCACAACCCTCGGTCCGGTTCGAT
* *
16127235 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGAGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGAGGGCACTCAG
* * * * * *
16127299 CCGGCCGGAGAGGTAAAATACGCAAGCCATAGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCT
65 CCAGCCGGAGAGGCAAAATACACAAGCCAGAGATCAGCCCGGTCCCCCCTGCATGCTACCGATCC
* *
16127364 TGCTACCGCAACCCTCGGTCCGGTCCGAT
130 TGCTACCACAACCCTCGGTCCGGTTCGAT
16127393 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16127420 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 62, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 5 0.02
158 264 0.96
159 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGAGGGCACTCAGC
CAGCCGGAGAGGCAAAATACACAAGCCAGAGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCT
GCTACCACAACCCTCGGTCCGGTTCGAT
Found at i:16127422 original size:26 final size:26
Alignment explanation
Indices: 16127393--16127445 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16127383 CCGGTCCGAT
16127393 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16127419 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16127445 C
1 C
16127446 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16127510 original size:710 final size:709
Alignment explanation
Indices: 16126076--16127514 Score: 1720
Period size: 710 Copynumber: 2.0 Consensus size: 709
16126066 TGGGCACTCA
* *
16126076 ACCGACCGAAGAGGTAGAATGCACAAGCTGGGGATCAGCTCGATCCCCCTACGTGCTATCGATCC
1 ACCGACCGAGGAGGCAGAATGCACAAGCTGGGGATCAGCTCGATCCCCCTACGTGCTATCGATCC
* * *
16126141 TACTGTTGGTCTTGCTACTGCAACCCTCGATCCGATCCAATCTTAGATTGGGAATGAACTGTGTA
66 TACTATTGGTCTTGCTACTGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTA
* *
16126206 TGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCATAAAACGAGAGTGCGGGCACCCA
131 TGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGAGTACGGGCACCCA
* * * * * *** * * *
16126271 ACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGACCGACCTGATCCCTTTTGCATGTTGTCGATC
196 ACCGACCGAAGAGGCAGAATACACAAGCCGAGGACCAACCAGATCCCCCCTGCATGCTATCAATC
* *
16126336 TTGCTGCTGCAACCCTCGGTCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
261 CTACTGCTGCAACCCTCGGTCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
16126401 ACCCATGAAATGAGCGTGCGGGCGTTGAGCCAGTCGGAGAGGCATAATGCGCAAGTCGAGGATCG
326 ACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCACAAGCCGAGGATCG
* * ** * * * *
16126466 GCTCGGTCCCCCTCTGCGTGCTGTCAGTCCCACTGCCACAACCTTTGGTCCGGCTGGGGCTTAGA
391 GCTCCGTCCCCCTCTGCATGCTACCAGTCCCACTGCCACAACCCTCGGTCCGACTGGCGCTTAGA
* * * ** *
16126531 CATGGAATGTACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGCGGGTGCTCAGCCAATCG
456 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGAGGGCACTCAGCCAACCG
* * * * * * * *
16126596 GAGACACAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTTGCGTGCTACCGATCCTGGTGCC
521 GAGACACAAAATACGCAAGCCAGAGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTACC
* * * * *
16126661 GTAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACCGGGGATGAA
586 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAGGGATGAA
* * * * *
16126726 CTCCGTATGCCTAAGTCAACCCATGAAACCAGCGTACGGGTGCTCAACTGGCTGGAGAG
651 CTCCGTATGCCTAAGTCAACCCACGAAACCAGCATACGGATGCTCAACCGACTGGAGAG
* ** *
16126785 ACCAGTA--GGGGAGGCAGAATGCGTAAGCTGGGGATCAGGC-CGATCCCCCT-CTGTGTGCTGT
1 ACC-G-ACCGAGGAGGCAGAATGCACAAGCTGGGGATCA-GCTCGATCCCCCTAC---GTGCTAT
* * * *
16126846 CGATCCTGCTATTGG--TT-CTACTGTCGCAACCCTC-AGTCCGGTCCGATCTTAGACTGTGAAT
60 CGATCCTACTATTGGTCTTGCTAC--T-GCAACCCTCGA-TCCGATCCAATCTTAGACTGGGAAT
* * * *
16126907 GAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTA
121 GAACTCTGTATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGAGTA
* * * *
16126972 CGGGCACTCAGCCGATCGAAGAGGCAGAATACACAAGCTG-GAGACCAACCCAG-TCCCCCCTGC
186 CGGGCACCCAACCGACCGAAGAGGCAGAATACACAAGCCGAG-GACCAA-CCAGATCCCCCCTGC
* * * ** * *
16127035 GTGCTATCAATCCTACT-ATCGCAACCCTTGGTTTGGT-TCGATCTTAGACTGGGAATGAATTCC
249 ATGCTATCAATCCTACTGCT-GCAACCCTCGGTCCGATCTC-ATCTTAGACTGGGAATGAACTCC
* *
16127098 GTATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCA
312 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCA
* **
16127163 CAAGCC-AGGGATCGGC-CCGTCTCCCTCTGCATGCTACC-GATCCTGCTGCCACAACCCTCGGT
377 CAAGCCGA-GGATCGGCTCCGTCCCCCTCTGCATGCTACCAG-TCCCACTGCCACAACCCTCGGT
* * **
16127225 CCGACTGGCGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGAG
440 CCGACTGGCGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGAG
** *** * *
16127290 GGCACTCAGCCGGCCGGAGAGGTAAAATACGCAAGCCATAGATCAGCCCGGTCCCCCCTGCGTGC
505 GGCACTCAGCCAACCGGAGACACAAAATACGCAAGCCAGAGATCAGCCCGATCCCCCCTGCGTGC
*
16127355 TACCGATCTTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
570 TACCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
16127420 TTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGATGCTCAACC
635 TTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCATACGGATGCTCAACC
16127485 GACTGGAGAG
700 GACTGGAGAG
*
16127495 GCCGACCGAGGAGGCAGAAT
1 ACCGACCGAGGAGGCAGAAT
16127515 ACATAAGTCA
Statistics
Matches: 610, Mismatches: 102, Indels: 35
0.82 0.14 0.05
Matches are distributed among these distances:
708 6 0.01
709 42 0.07
710 288 0.47
711 271 0.44
712 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (709 bp):
ACCGACCGAGGAGGCAGAATGCACAAGCTGGGGATCAGCTCGATCCCCCTACGTGCTATCGATCC
TACTATTGGTCTTGCTACTGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCTGTA
TGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGAGTACGGGCACCCA
ACCGACCGAAGAGGCAGAATACACAAGCCGAGGACCAACCAGATCCCCCCTGCATGCTATCAATC
CTACTGCTGCAACCCTCGGTCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAATGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCACAAGCCGAGGATCG
GCTCCGTCCCCCTCTGCATGCTACCAGTCCCACTGCCACAACCCTCGGTCCGACTGGCGCTTAGA
CATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGAGGGCACTCAGCCAACCG
GAGACACAAAATACGCAAGCCAGAGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTACC
GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCAGGGATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACCAGCATACGGATGCTCAACCGACTGGAGAG
Found at i:16128248 original size:26 final size:26
Alignment explanation
Indices: 16128210--16128262 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16128200 GGCTCAAACT
16128210 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16128236 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16128262 C
1 C
16128263 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16128948 original size:26 final size:26
Alignment explanation
Indices: 16128910--16128959 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16128900 GTCTGATCTG
16128910 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
* *
16128936 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
16128960 CTATGTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:16129403 original size:158 final size:157
Alignment explanation
Indices: 16129141--16129642 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 157
16129131 ACTCCATATG
* * *
16129141 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAG
* * ** * * * *
16129205 CCGGTCAGAGAGGTAGAATGGGCAAGCTAGGGACCAGCCCGATCCACCCTGCGTGCTATCGATCT
65 CCGG-CCGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCC-CCCTGCGTGCTACCGATCC
* * * *
16129270 TGCTACTGCAACCCTCGATCCGGTCT-GAT
128 TGCTGCCGCAACCCTTGGTCCGGTCTCGAT
* * *
16129299 CATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCT-ATG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCA-G
* * * * *
16129363 CCGGCCGTAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCTCCTTCTGCGTGTTACCGGTC
65 CCGGCCG-AGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATC-CC-CCTGCGTGCTACCGATC
* * * * **
16129428 CCGCTGCCACAACCCTTGGTCC-GACTGGGG
127 CTGCTGCCGCAACCCTTGGTCCGGTCTCGAT
** * *
16129458 CTTAGACAT-GGAATGAACTCTATATGCCTAA-TCCAACCCACGAAACGGGCATGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT-CAACCCATGAAACGAGCATGCGGGTGCTCA
* * * * * *
16129521 ACCAGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCAGATC
64 GCCGGCC-GAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTGCGTGCTACCGATC
* *
16129586 CTGCTGCCGTAACCCTTGGTCCGAT-TCGAT
127 CTGCTGCCGCAACCCTTGGTCCGGTCTCGAT
*
16129616 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16129643 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 149 0.54
159 118 0.43
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGC
CGGCCGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTACCGATCCTGC
TGCCGCAACCCTTGGTCCGGTCTCGAT
Found at i:16129652 original size:26 final size:26
Alignment explanation
Indices: 16129616--16129668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16129606 CCGATTCGAT
*
16129616 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16129642 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16129668 C
1 C
16129669 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16131095 original size:159 final size:159
Alignment explanation
Indices: 16130890--16131912 Score: 639
Period size: 159 Copynumber: 6.4 Consensus size: 159
16130880 CTGGTCTGAC
* * ** * *
16130890 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATTCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGCGCTCAG
* *
16130954 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
*
16131019 CCACTGCCACAACCCTCGGTCTGGCTGGGG
130 CCACTGCCACAACCCTCGATCTGGCTGGGG
* * * * * *
16131049 CTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGCGCTCAGC
* ** * * *
16131114 TGGTCGGAGAGGCAGAATGCGCAAGCTAGGGG-CCGGCCC-AGTCCCCC-CTACGTGCTGTCGAT
66 CGACCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGA-TCCCCCTCTGCGTGCTGTCGGT
* ** * * * * **
16131176 CCTACTATCACAACCCTTGGTCTGGTTTGAT
129 CCCACTGCCACAACCCTCGATCTGGCTGGGG
** * * *
16131207 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGCGCTCAG
* * ** * * * *
16131271 TCGACCGAAGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGAT-CCCCTCTTGGGTGCTGTTGAT
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTC-TGCGTGCTGTCGGT
*** * * * * * **
16131335 CCTGTTGCCGCAACCCTCGGTCCGGTTCGAT
129 CCCACTGCCACAACCCTCGATCTGGCTGGGG
* * * * * ** * *
16131366 CTTAGAC-TGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCGTTTAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGCGCTCAG
* * * * * * ** * * * * *
16131430 CCGATCGGATAGGTATAATGCGTAAGCTGAGGATCAACTCGGTCCCCTTCTGCGTGCTGTCAGTG
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
* * * *
16131495 CCGCTGCCAGAACCCTCGATCTGACTGGGA
130 CCACTGCCACAACCCTCGATCTGGCTGGGG
* * ** * * **
16131525 CTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCATGAAACAAGTGTACGGGTTCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGCGCTCAGC
* * ** * * * *
16131590 C-AGCCGGAGAGGTAGAATACTTAAG-TCAGGGATCGGCCTGGTCCCCCCCTACGTGCTACCATT
66 CGA-CCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGAT--CCCCCT-C-TG----C-GT
* ** * *
16131653 CCTGTTGCTGGTCCTGCTG-CAGCAACCCTCGATCCGACTGGGG
120 GCTG-T-C-GGTCCCACTGCCA-CAACCCTCGATCTGGCTGGGG
* * * *
16131696 CGTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGT-GGGTGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGT-TCGGGCGCTCAG
* * * * * *** * *
16131760 CTGGCCGGAGAGGCAGAATGCACAAGCCGAGGATTACCCCG-GCCCCCTTCTGTGTGCTGTCGGT
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCC-TCTGCGTGCTGTCGGT
* * * * *
16131824 CCTACTACCACAACCCTTGATCTTGCTGGCG
129 CCCACTGCCACAACCCTCGATCTGGCTGGGG
* * * *
16131855 CTTAGACATGGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGG
16131913 GCACTCCAGC
Statistics
Matches: 665, Mismatches: 167, Indels: 63
0.74 0.19 0.07
Matches are distributed among these distances:
157 8 0.01
158 124 0.19
159 343 0.52
160 55 0.08
161 6 0.01
162 5 0.01
163 2 0.00
167 3 0.00
168 10 0.02
169 2 0.00
170 3 0.00
171 104 0.16
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCC
CACTGCCACAACCCTCGATCTGGCTGGGG
Found at i:16132670 original size:159 final size:156
Alignment explanation
Indices: 16132507--16132872 Score: 387
Period size: 159 Copynumber: 2.3 Consensus size: 156
16132497 GGTCCTGCTG
* *
16132507 CCACAACCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
1 CCACAACCCTCGGTCC-GTCTGATCTTAGACT-GGAATGAACTTCGTATGCCTAAGCCAACCCAT
* * ** * *
16132572 GAAACGGGCGTGCAGGCGCTGAGTCGGTCGAAGAGGCATAATGCACAAGCCAGGGATC-AGCCCG
64 GAAACAGGCGTGCAGGCGCTCACCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGA-CCCG
* *
16132636 ATC-CCCGTCTACGTGCTGTCGGTCCCACTA
128 ATCTCCC--CTACGTGCTGTCGATACCACTA
* ** * *
16132666 CCACAACCCTCGATTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCG-GTCCGTCT-GATCTTAGAC-TGGAATGAACTTCGTATGCCTAAGCCAACCCA
* * **
16132730 TGAAACAGGCGTGCGGGCGCTCACCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCG
63 TGAAACAGGCGTGCAGGCGCTCACCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCG
* * *
16132795 ATCTTCCCTACGTGCTGTCGATACTACTG
128 ATCTCCCCTACGTGCTGTCGATACCACTA
* * * *
16132824 CCTCAACCCTCGGTCCGGTCTGATCTTAGATTCAGAATGAACATCGTAT
1 CCACAACCCTCGGTCC-GTCTGATCTTAGACT-GGAATGAACTTCGTAT
16132873 CCTTAGACTG
Statistics
Matches: 168, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 4 0.02
158 51 0.30
159 106 0.63
160 7 0.04
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (156 bp):
CCACAACCCTCGGTCCGTCTGATCTTAGACTGGAATGAACTTCGTATGCCTAAGCCAACCCATGA
AACAGGCGTGCAGGCGCTCACCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATC
TCCCCTACGTGCTGTCGATACCACTA
Found at i:16132902 original size:502 final size:505
Alignment explanation
Indices: 16131990--16132929 Score: 1083
Period size: 502 Copynumber: 1.9 Consensus size: 505
16131980 TGACTATCGA
*
16131990 TCCTGCTGCCACAACCCTTAGTCCGGTCTGACTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
1 TCCTGCTGCCACAACCCTTAGTCCAGTCTGACTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * *
16132055 AACCCACTGGAAATGAAGGCGTGCGGGTGCCTGAGCCGGCCGGAAAGGCATAATGGCACAAGCCG
66 AACCCACTGGAAACG-AGGCGTGCAGGCGCCTGAGCCGGCCGGAAAGGCATAATGGCACAAGCCG
* ** ** * * *
16132120 GGGGATTTGGTTCGATCCCCTTCAAGCGTGCTTAAACCAGTCCCGCTGCACAACCCTCAGTTCGT
130 AGGGATTCAGCCCGATCCCCGTCAAGCGTGCTT--A-CAGTCCCACTCCACAACCCTCAGTTCGT
* * *
16132185 GGGGCTTAGACGTGGAATGAAACTTCCCTAACCTAGCCAACCGACGAAACGGGCGTACAGGGACT
192 GGGGCTTAGACATGGAATGAAACTTCCCTAACCTAGCCAACCCACGAAACAGGCGTACAGGGACT
* * *
16132250 CAACCGGCCTGAGAGGCAGAATGCTCAAGCCGGGGATCGACACGGTCCCCCTGCGTATGGCCGAT
257 CAACCGGCCTGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGATCCCCCTACGTATGGCCGAT
* * * **
16132315 CCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGACTGGGAATAAACTCCATATACTTAGACT
322 ACTACTGCCACAACCCTCGGTCCGATTCGATCTTAGACTCAGAATAAACTCCATATACTTAGACT
* * *
16132380 AGGGATGAACTCCGTATGCCTATGTCAAACCATGAAACGAGCGTGCGGGTGCTCAGTCGGCTGAA
387 AGGGATGAACTCCATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGTGCTCAGTCGGCTGAA
16132445 GAGGCCGATCGGAGAGGCAAAATGAGTAGAATATGCTATTGATCCTACTGCCGG
452 GAGGCCGATCGGAGAGGCAAAATGAGTAGAATATGCTATTGATCCTACTGCCGG
*
16132499 TCCTGCTGCCACAA-CCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAA
1 TCCTGCTGCCACAACCCTT-AGTCCAGTCTGA-CTTAGACTGGGAATGAACTCT-GTATGCCTAA
* *
16132562 GTCAACCCA-T-GAAACG-GGCGTGCAGGCG-CTGAGTCGGTC-GAAGAGGCATAAT-GCACAAG
63 GTCAACCCACTGGAAACGAGGCGTGCAGGCGCCTGAGCCGGCCGGAA-AGGCATAATGGCACAAG
* *
16132621 CC-AGGGA-TCAGCCCGATCCCCGTCTA-CGTGCTGT-CGGTCCCACTACCACAACCCTC-GATT
127 CCGAGGGATTCAGCCCGATCCCCGTCAAGCGTGCT-TACAGTCCCACT-CCACAACCCTCAG-TT
* * *
16132681 CCGCTGGGGCTTAGACATGGAATG-AAC-TCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGC
189 -CG-TGGGGCTTAGACATGGAATGAAACTTCCCTA-ACCT-AGCCAACCCACGAAACAGGCGTAC
* * * * *
16132744 -GGGCGCTCACCCGGCC-GAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCTTCCCTACG
250 AGGG-ACTCAACCGGCCTG-AGAGGCAGAATGCGCAAGCCGGGGATCGACACGATC-CCCCTACG
* * * * * *
16132807 TGCT-GTCGATACTACTGCCTCAACCCTCGGTCCG-GTCTGATCTTAGATTCAGAATGAACAT-C
312 T-ATGGCCGATACTACTGCCACAACCCTCGGTCCGATTC-GATCTTAGACTCAGAATAAAC-TCC
* * * * * * *
16132869 GTATCCTTAGACTGGGGATGAACTCTATATGCCTAAGTTAACCCACGATACGAGCGTGCGG
374 ATATACTTAGACTAGGGATGAACTCCATATGCCTAAGTCAAACCACGAAACGAGCGTGCGG
16132930 ACGCTCAGCC
Statistics
Matches: 362, Mismatches: 52, Indels: 41
0.80 0.11 0.09
Matches are distributed among these distances:
498 9 0.02
499 18 0.05
500 12 0.03
501 89 0.25
502 115 0.32
503 6 0.02
504 12 0.03
505 18 0.05
506 10 0.03
508 9 0.02
509 26 0.07
510 38 0.10
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (505 bp):
TCCTGCTGCCACAACCCTTAGTCCAGTCTGACTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
AACCCACTGGAAACGAGGCGTGCAGGCGCCTGAGCCGGCCGGAAAGGCATAATGGCACAAGCCGA
GGGATTCAGCCCGATCCCCGTCAAGCGTGCTTACAGTCCCACTCCACAACCCTCAGTTCGTGGGG
CTTAGACATGGAATGAAACTTCCCTAACCTAGCCAACCCACGAAACAGGCGTACAGGGACTCAAC
CGGCCTGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGATCCCCCTACGTATGGCCGATACTA
CTGCCACAACCCTCGGTCCGATTCGATCTTAGACTCAGAATAAACTCCATATACTTAGACTAGGG
ATGAACTCCATATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGTGCTCAGTCGGCTGAAGAGG
CCGATCGGAGAGGCAAAATGAGTAGAATATGCTATTGATCCTACTGCCGG
Found at i:16133918 original size:26 final size:26
Alignment explanation
Indices: 16133889--16133944 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16133879 TCGATTCGAT
*
16133889 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTACGCATG
* *
16133915 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGCATG
16133941 CTTA
1 CTTA
16133945 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGCATG
Found at i:16134353 original size:158 final size:157
Alignment explanation
Indices: 16134064--16134586 Score: 546
Period size: 158 Copynumber: 3.3 Consensus size: 157
16134054 TCCTGCTGCA
* * ***
16134064 CAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATTGACGAA
1 CAACCCTCGGTCC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * ** * * *
16134129 ACGAGCGTACGAGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCC
65 ACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCC
* * * * * *
16134194 CCTTTATGTGCTATCAATCCCACTACCG
130 CCTCTACGTGCTGTCGATCCTACTGCCG
** *
16134222 CAACCCTCGGTCCCATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGT-CCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * *
16134287 ACGAGCGTGCGGGCACTGAGCCGGTCGGAGAGGTATAATGCGCAAGCCGGGGATTGACCCGATCC
65 ACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGT-C
* * * *
16134352 CCCTCTACGTGCTGCCGGTCCTGCTGCCA
129 CCCTCTACGTGCTGTCGATCCTACTGCCG
*** * ** * *
16134381 CAACCCTCGGTCTGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 CAACCCTCGGTCCATC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * *
16134445 AACGGGTGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTGGTC
64 AACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTC
*
16134510 ACCC-CTGCGTGCTGTCGATCCTACTGCCG
129 -CCCTCTACGTGCTGTCGATCCTACTGCCG
* * *
16134539 CAACCCTAGATCCATTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 CAACCCTCGGTCCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGC
16134587 TTAGACTGGG
Statistics
Matches: 294, Mismatches: 64, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 163 0.55
159 129 0.44
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CAACCCTCGGTCCATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCC
CTCTACGTGCTGTCGATCCTACTGCCG
Found at i:16134432 original size:159 final size:158
Alignment explanation
Indices: 16134085--16134545 Score: 442
Period size: 159 Copynumber: 2.9 Consensus size: 158
16134075 CCGATCCGAT
** *** * * **
16134085 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATTGACGAAACGAGCGTACGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * ** *
16134150 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTC-CCCTTTATGTGCTATCAATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGATCACCC-CTACGTGCTGCCGATCC
* * * *** ***
16134214 CACTACCGCAACCCTCGGTCCCATCT-AAT
130 TACTGCCACAACCCTCGGT-CTGGCTGGGG
* * *
16134243 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
16134308 CGGTCGGAGAGGTATAATGCGCAAGCCGGGGATTGACCCGATCCCCCTCTACGTGCTGCCGGTCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGATCACCC-CTACGTGCTGCCGATCC
*
16134373 TGCTGCCACAACCCTCGGTCTGGCTGGGG
130 TACTGCCACAACCCTCGGTCTGGCTGGGG
* * *
16134402 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
16134466 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCTGGTCACCCCTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGATCACCCCTACGTGCTGCCGATCC
*
16134531 TACTGCCGCAACCCT
130 TACTGCCACAACCCT
16134546 AGATCCATTC
Statistics
Matches: 248, Mismatches: 52, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
158 121 0.49
159 126 0.51
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGATCACCCCTACGTGCTGCCGATCCT
ACTGCCACAACCCTCGGTCTGGCTGGGG
Found at i:16134590 original size:26 final size:26
Alignment explanation
Indices: 16134560--16134615 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16134550 CCATTCCGAT
16134560 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16134586 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16134612 CTTA
1 CTTA
16134616 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16136033 original size:26 final size:26
Alignment explanation
Indices: 16136004--16136056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16135994 TCGGTCCGAT
16136004 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
16136030 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16136056 C
1 C
16136057 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16136533 original size:26 final size:26
Alignment explanation
Indices: 16136504--16136556 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16136494 CCGGTCTGAT
*
16136504 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
16136530 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16136556 C
1 C
16136557 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16136969 original size:159 final size:159
Alignment explanation
Indices: 16136611--16136973 Score: 433
Period size: 159 Copynumber: 2.3 Consensus size: 159
16136601 GAGAGGCGGA
* * * * *
16136611 CCGGAGAGGCATAACGCACAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGCCGATCCTGC
1 CCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGCAGATCCTGC
* * * * *
16136676 TGCCACATCCCTCAGACCGGCTGGGGCTTAGACGTGCAATGAACTCCGTATCCCTAAGCCAACCC
66 TGCCACAACCCTCAGACCGACTAGGGCTTAGACATGCAATGAACTCCCTATCCCTAAGCCAACCC
* * *
16136741 ACGAAATGAGGGTGCGGGCGCTCAGCCGG
131 ACGAAACGAGGGTGCAGGCGCTCAGCCAG
* * * ** * *
16136770 CCAGAGAGGCAGAATGCTCAAGCCGGGGACCGATCTGGTCCCCCTCTACGTGCTGGCAG-TCCTG
1 CCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCT-GCAGATCCTG
* *** * *
16136834 CTGCCATAACCCTCAGTTTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
65 CTGCCACAACCCTCAGACCGACTAGGGCTTAGACATGCAATGAACTCCCTATCCCTAAGCCAACC
16136899 CACGAAACG-GGAGTGCAGGCGCTCAGCCAG
130 CACGAAACGAGG-GTGCAGGCGCTCAGCCAG
* * *
16136929 CCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCT
1 CCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCT
16136974 GCATGCTGTC
Statistics
Matches: 168, Mismatches: 34, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
158 2 0.01
159 163 0.97
160 3 0.02
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (159 bp):
CCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGCAGATCCTGC
TGCCACAACCCTCAGACCGACTAGGGCTTAGACATGCAATGAACTCCCTATCCCTAAGCCAACCC
ACGAAACGAGGGTGCAGGCGCTCAGCCAG
Found at i:16138251 original size:26 final size:26
Alignment explanation
Indices: 16138221--16138273 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16138211 CTGGTCCGTT
16138221 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16138247 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16138273 C
1 C
16138274 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16138750 original size:26 final size:26
Alignment explanation
Indices: 16138721--16138771 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16138711 CTGATCTGAT
16138721 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
16138747 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCTGTAT
16138772 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:16139303 original size:157 final size:158
Alignment explanation
Indices: 16138941--16139319 Score: 444
Period size: 158 Copynumber: 2.4 Consensus size: 158
16138931 AACTCCGTAT
* * *
16138941 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
16139006 TCGATCGAAGAGGCAGAATGCATAAGCTAGGGATCGACCCGGTCCCTCCTGCCTGCTGTCGATTC
66 TCGATCGAAGAGGCAGAATGCATAAGCTAGGGATCGACCCGGTCCCCCCTGCCTGCTGTCGATCC
* * * * *
16139071 TACTACCGCAACGCTCGGTCCGGTCTTG
131 TACTACCACAACCCTCGATCCAGTCTGG
* * * * * * *
16139099 TCTTAGAC-TGGTAATGAACTCTGC-ATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCGCTG
1 GCTTAGACATGG-AATAAACTC-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
16139162 AGTCGATCGAAGATGCATAATGCATAAG-TTGGGATTGACCCGGTCCCCCTCTGCGTGCTGTCGG
64 AATCGATCGAAGAGGCAGAATGCATAAGCTAGGGATCGACCCGGTCCCCC-CTGCCTGCTGTCGA
* *
16139226 TCCTGCTGCCACAACCCTCGATCCAG-CTGGG
128 TCCTACTACCACAACCCTCGATCCAGTCT-GG
*
16139257 GCTTA-ACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
16139320 GCCAACCGGA
Statistics
Matches: 181, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 68 0.38
158 112 0.62
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGATCGAAGAGGCAGAATGCATAAGCTAGGGATCGACCCGGTCCCCCCTGCCTGCTGTCGATCC
TACTACCACAACCCTCGATCCAGTCTGG
Found at i:16139944 original size:26 final size:26
Alignment explanation
Indices: 16139915--16139967 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16139905 CCGATCCGAT
16139915 CTTAGAC-TGGGAATAAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
* *
16139941 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
16139967 C
1 C
16139968 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:16140430 original size:26 final size:26
Alignment explanation
Indices: 16140401--16140453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16140391 CTGGTCTAAT
* *
16140401 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
16140427 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
16140453 C
1 C
16140454 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Done.