Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 133 of 402
Found at i:16140844 original size:340 final size:349
Alignment explanation
Indices: 16140219--16140894 Score: 793
Period size: 340 Copynumber: 2.0 Consensus size: 349
16140209 TCAATCTCGA
* * *
16140219 TGCCACAATCCTCGGTCTGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCC
* * *
16140284 ATGAAACGGGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAAATGCGCAAGCCGGGGATCGGCCCG
66 ACGAAACGAGCGTGCGGACGCTCAACCGGCCGGAGAGGCAAATGCGCAAGCCGGGGATCGGCCCG
* * ** * * *
16140349 GTCCCCCTTGTATGCTATCGATCCTGCTACCGCAACCCTCGTCTGGTCTAATCTTAGATTGGGAA
131 GTCCCCCTTGCATGCTACCGATCCTGCTACCG-AACCCTCGTCTGACCTAACCCTAGATTCGG-A
* * * *
16140414 TGAACTCTGTATGCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAAGCCACAAAATGAGTGT
194 T--ACTCTGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGT
** * * *
16140479 GCGGGTGCTCAGTCGACCGGAGAGGCATAATGCACAAGCTGGGGATCAAGCCCAATCCC-CCTCT
257 GCGGGTGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATC-AGCCCAATCCCACC-CT
16140543 GCATGCTGCCGATTCCACTGTCGGTCCTGC
320 GCATGCTGCCGATTCCACTGTCGGTCCTGC
* *
16140573 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCC
* * * * * *
16140637 ACGAAACGAGCGTGCGGACGTTCAGCCGGCTGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCT
66 ACGAAACGAGCGTGCGGACGCTCAACCGGCCGGAGAGGCA-AATGCGCAAGCCGGGGATCGGCCC
* * ** *
16140702 GGTCCCCC-TGCATGCTGCCGATCCTGCTACTG-GTCCT-G-CT-ACCATAACCCTCGATTCGG-
130 GGTCCCCCTTGCATGCTACCGATCCTGCTACCGAACCCTCGTCTGACC-TAACCCTAGATTCGGA
* *
16140761 T-C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGC
194 TACTCTGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGC
** ** * *
16140821 GGGTGCTCAACCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCACCCTGCGT
259 GGGTGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCACCCTGCAT
*
16140886 GCTGTCGAT
324 GCTGCCGAT
16140895 CTAGCTGCCG
Statistics
Matches: 275, Mismatches: 44, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
339 23 0.08
340 86 0.31
341 2 0.01
342 1 0.00
343 1 0.00
344 1 0.00
347 1 0.00
348 1 0.00
349 13 0.05
350 1 0.00
351 3 0.01
353 72 0.26
354 70 0.25
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (349 bp):
TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGACGCTCAACCGGCCGGAGAGGCAAATGCGCAAGCCGGGGATCGGCCCG
GTCCCCCTTGCATGCTACCGATCCTGCTACCGAACCCTCGTCTGACCTAACCCTAGATTCGGATA
CTCTGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGG
GTGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCACCCTGCATGC
TGCCGATTCCACTGTCGGTCCTGC
Found at i:16140857 original size:169 final size:171
Alignment explanation
Indices: 16140426--16140894 Score: 474
Period size: 169 Copynumber: 2.8 Consensus size: 171
16140416 AACTCTGTAT
* * * * *
16140426 GCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAAGCCACAAAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
* * * **
16140491 TCGACCGGAGAGGCATAATGCACAAGCTGGGGATCAAGCCCAATCCCCCTCTGCATGCTGCCGAT
66 CCG-GCGGAGAGGCAGAATGCGTAAGCTGGGGATCAAGCCCAATCCCCCTCTGCATGCTGCCGAT
* * *
16140556 TCCACTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
130 TCCACTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTCGA
* * ** *
16140598 GCTTAGACAT-GGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGTTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCA
* ***
16140661 GCCGGCTGGAGAGGCAGAATGCGTAAGCTGGGGATC-GGCCTGGT-CCCC-CTGCATGCTGCCGA
65 GCCGGC-GGAGAGGCAGAATGCGTAAGCTGGGGATCAAGCCCAATCCCCCTCTGCATGCTGCCGA
* * * *
16140723 -T-C-CTGCTACTGGTCCTGCTACCATAACCCTCGATTCG-GTCCGA
129 TTCCACTG-T-C-GGTCCTGCTACCACAACCCTCGGTCCGACT-CGA
* * *
16140766 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
* * * * *
16140831 CCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATC-AGCCCGATCCCACC-CTGCGTGCTGTCGA
66 CCGG-CGGAGAGGCAGAATGCGTAAGCTGGGGATCAAGCCCAATCCC-CCTCTGCATGCTGCCGA
16140894 T
129 T
16140895 CTAGCTGCCG
Statistics
Matches: 244, Mismatches: 41, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
165 3 0.01
166 2 0.01
167 4 0.02
168 55 0.23
169 77 0.32
170 8 0.03
171 77 0.32
172 17 0.07
173 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
CCGGCGGAGAGGCAGAATGCGTAAGCTGGGGATCAAGCCCAATCCCCCTCTGCATGCTGCCGATT
CCACTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTCGA
Found at i:16141225 original size:158 final size:159
Alignment explanation
Indices: 16140598--16141260 Score: 514
Period size: 158 Copynumber: 4.1 Consensus size: 159
16140588 TCCGACTGGG
* * * *
16140598 GCTTAGACAT-GGAATGAACT-CGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGACGTTC
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTA
* * * * *
16140660 AGCCGG-CTGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCTGCATGCTGCCGAT
65 AGCCGGTC-AGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGAT-CCCC--C---CTG-CG-T
* * * * *
16140724 CCTGCTACTGGTCCTGCTACCATAACCCTC-GATTCGGTCCGA
121 GCTG-T-C-GATCCTGCTACCGTAACCCTCAG-TCCGGTCCAA
* * * *
16140766 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-TAAA-ATGAGCGTGCGGGTGCTC
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACA-GAGCGTGCGGGCGCT-
16140829 AA-CCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCACCCTGCGTGCTGTCG
64 AAGCCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCC-CCCTGCGTGCTGTCG
* * *
16140893 AT-CTAGCTGCCGCAACCCTCAGTTCGGTCCAA
128 ATCCT-GCTACCGTAACCCTCAGTCCGGTCCAA
* * * *
16140925 TCATAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC-GAGCGTACGGGCGCTAA
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTAA
* * * * * *
16140989 GCCAGTCAGAGAGG-ATAACGCGCAAGCAGGGGATC-GACCCGATCCCCCTCTGCGTGCTGTCGG
66 GCCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCAG-CCCGATCCCCC-CTGCGTGCTGTCGA
* * * *
16141052 TCCCGC-AGCCATAACCCT-AGGTCCGG-CTAGG
129 TCCTGCTA-CCGTAACCCTCA-GTCCGGTCCA-A
* * * *
16141083 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCAGGCACTT
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTA
* * * * * * *
16141146 AGCTGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGTCCGGTCCCCCCTGCGTGCAGCCGAT
65 AGCCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGAT
* ** ***
16141211 CCTGCTACCGTAACCCTTAGTATGGTTTGA
130 CCTGCTACCGTAACCCTCAGTCCGGTCCAA
*
16141241 TCTTAGACTGGGAATGAACT
1 GCTTAGACTGGGAATGAACT
16141261 TCGTGTGCTT
Statistics
Matches: 404, Mismatches: 65, Indels: 62
0.76 0.12 0.12
Matches are distributed among these distances:
157 7 0.02
158 167 0.41
159 118 0.29
160 6 0.01
161 1 0.00
162 4 0.01
163 2 0.00
164 3 0.01
167 2 0.00
168 23 0.06
169 69 0.17
170 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTAA
GCCGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
CTGCTACCGTAACCCTCAGTCCGGTCCAA
Found at i:16141893 original size:11 final size:11
Alignment explanation
Indices: 16141873--16141905 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16141863 CGGTTAGGCT
16141873 CTCCGACGATG
1 CTCCGACGATG
*
16141884 CTCTGACGATG
1 CTCCGACGATG
16141895 CTCCGACGATG
1 CTCCGACGATG
16141906 GTGCCCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16142542 original size:26 final size:26
Alignment explanation
Indices: 16142513--16142563 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16142503 CCGGTCCGAT
16142513 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16142539 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
16142564 CCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16142850 original size:159 final size:158
Alignment explanation
Indices: 16142678--16143041 Score: 354
Period size: 159 Copynumber: 2.3 Consensus size: 158
16142668 CTGCTACCGT
* * **
16142678 AACCATCGGTCCGGTTTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGTTAACCCAC-AAA
1 AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * *
16142742 ACGAACGTTCGGGCATTAAGCCAATCGAAGAGGCATAATGGGTAAGCCAGGGATCGGCCTGGTCC
66 ACG-ACGTGCGGGCACTAAGCCAATCGAAGAGCCAGAATGCGCAAGCCAGGGATCGGCCCGGTCC
* * * *
16142807 CCCTCTACGTGCTACCGGTCCCGCTGCCAC
130 CCC-ATACGTGCTACCGATCCCACCGCCAC
* * * ** * *
16142837 AACCCTCGATCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACTCACGAA
1 AACCCTCGGTCCGGTTTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
** * * * * * *
16142901 ATTGGCGTGCGGGCACTCAGCCAGTCGGAGAGCCAGAATGCGCATGCCGGGGATCGGCCCGGTCC
65 AACGACGTGCGGGCACTAAGCCAATCGAAGAGCCAGAATGCGCAAGCCAGGGATCGGCCCGGTCC
* ** * *
16142966 CCCATGCGTGCTGTCGATCCTACCGTCAC
130 CCCATACGTGCTACCGATCCCACCGCCAC
* *
16142995 AACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
16143042 TTAGACTTGG
Statistics
Matches: 159, Mismatches: 43, Indels: 7
0.76 0.21 0.03
Matches are distributed among these distances:
157 1 0.01
158 54 0.34
159 99 0.62
160 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
ACGACGTGCGGGCACTAAGCCAATCGAAGAGCCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCC
CCATACGTGCTACCGATCCCACCGCCAC
Found at i:16143056 original size:26 final size:26
Alignment explanation
Indices: 16143015--16143067 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16143005 TCGGTCTGAT
16143015 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16143041 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16143067 C
1 C
16143068 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16143125 original size:13 final size:13
Alignment explanation
Indices: 16143107--16143131 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16143097 GTGCTCAGTT
16143107 GGTCGGAGAGGCC
1 GGTCGGAGAGGCC
16143120 GGTCGGAGAGGC
1 GGTCGGAGAGGC
16143132 ATAATGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.56, T:0.08
Consensus pattern (13 bp):
GGTCGGAGAGGCC
Found at i:16143894 original size:26 final size:26
Alignment explanation
Indices: 16143851--16143903 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16143841 CTGGTCTGAT
*
16143851 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
*
16143877 CTTAGACTAGGG-ACGAACTCCGTATG
1 CTTAGACT-GGGAACGAACTCCATATG
16143903 C
1 C
16143904 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:16144622 original size:26 final size:26
Alignment explanation
Indices: 16144584--16144636 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16144574 GGCTCAAACT
*
16144584 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16144610 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16144636 C
1 C
16144637 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16145165 original size:26 final size:26
Alignment explanation
Indices: 16145136--16145187 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16145126 CGGTCCGATA
16145136 TTAGAC-TAGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
16145162 TTAGACATTGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
16145188 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:16145457 original size:159 final size:157
Alignment explanation
Indices: 16145161--16145663 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 157
16145151 ACTCCGTATG
* * *
16145161 CTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTTAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
*** * * * * * * * *
16145226 CGGGTGGAGAGGCAGAATGCGTAAGTTGAGGACCAGCCCGGTCCCTCCCTGTGTATTG-TG--GA
65 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGAT-CC-CCCTCTGCA-TGCTGCAGA
* * *
16145288 TCCTGTTGCCACAACCCTCGGTTTGGTCCGAT
127 TCCTGCTGCCACAACCCTCGG-TCGGTCAGAT
* * * * *
16145320 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTTCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* *
16145385 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCAGGTCC
65 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCAGATCC
* * * **
16145450 CGCTGCCACAACCCTCGGTCCGACTAGGG
130 TGCTGCCACAACCCTCGGTCGGTC-AGAT
* *
16145479 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
16145544 C-AGTCGGAGAGGCAGAATGCTCAAGTCAGGGATCGGGCCGATCCCCC-CTGCATGCTACCA-AT
65 CGA-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCT-GCAGAT
* * *
16145606 CCTGCTGCCGCAACCCTCGGCCCGGTCTGAT
128 CCTGCTGCCACAACCCTCGG-TCGGTCAGAT
* *
16145637 CTTAGGCTAGTAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
16145664 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 10 0.04
158 58 0.21
159 210 0.75
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCAGATCCT
GCTGCCACAACCCTCGGTCGGTCAGAT
Found at i:16147780 original size:26 final size:26
Alignment explanation
Indices: 16147729--16147781 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16147719 CTGATCCGAT
*
16147729 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16147755 CTTAGACT-GGAGATGAACTCTATATG
1 CTTAGACTGGGA-ATGAACTCCATATG
16147781 C
1 C
16147782 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16151248 original size:159 final size:158
Alignment explanation
Indices: 16150971--16151335 Score: 396
Period size: 159 Copynumber: 2.3 Consensus size: 158
16150961 GTAGGATCGA
* * * *
16150971 CAGCACGGAGA-GGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGACCAGCTGAGC
* * * * * * *
16151035 GCTGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTC
66 CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCAAACGGAGTTCATTCCACGTCTAAACCCCAGCC
* *
16151100 AGACTGAGGGTTATGGCAGTAGGACT-GG
131 AGACTGAGGGATATGGCAGCAGGA-TAGG
* * * *
16151128 CAGCACGCAGAGGGGGACCGGACCGGTCCCTGGCTTGAGCATTCTGCCTCTCTTG-CCAGCTGAG
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTC-CGACCAGCTGAG
* * * *
16151192 CTCCCGCACG-TTCGTTTCATGGGTTGGCTTAGGGAAACGGTGTTCATTCCACGTCTAAGCCCCA
65 C-CCCGCACGCCT-GTTTCATGGGTTGGCTTAGGCAAACGGAGTTCATTCCACGTCTAAACCCCA
* * *
16151256 GCCGGTCTGAGGGATGTGGCAGCAGGATAGG
128 GCCAGACTGAGGGATATGGCAGCAGGATAGG
* * * * * *
16151287 CAGCATGTAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTATGCCT
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCT
16151336 ATCTGGCCGC
Statistics
Matches: 170, Mismatches: 33, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
157 10 0.06
158 46 0.27
159 114 0.67
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGACCAGCTGAGC
CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCAAACGGAGTTCATTCCACGTCTAAACCCCAGCC
AGACTGAGGGATATGGCAGCAGGATAGG
Found at i:16151425 original size:26 final size:26
Alignment explanation
Indices: 16151395--16151447 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16151385 GTTGACTTAG
*
16151395 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16151421 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16151447 G
1 G
16151448 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16152758 original size:11 final size:11
Alignment explanation
Indices: 16152738--16152770 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16152728 CTCGAGGCAC
16152738 CATCGTCGGAG
1 CATCGTCGGAG
*
16152749 CATCGCCGGAG
1 CATCGTCGGAG
16152760 CATCGTCGGAG
1 CATCGTCGGAG
16152771 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16153379 original size:26 final size:26
Alignment explanation
Indices: 16153348--16153403 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16153338 TGGGTTGACT
16153348 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
16153374 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
16153400 TAAG
1 TAAG
16153404 ATCGGATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:16153895 original size:159 final size:158
Alignment explanation
Indices: 16153377--16153899 Score: 520
Period size: 158 Copynumber: 3.3 Consensus size: 158
16153367 CCCAGTCTAA
* * *
16153377 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCTAGGGTTGCGGCAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAG-AGGATCGACA
* * * * * * *
16153442 GCACGCA-GGGGTGA-CCAGGCCAATCCTCGGCTTGTGCATTCTGCCTCTCAG-GTCAGCTCAGC
65 GCACGTAGGGGGGGATCGA-GTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACT-AGCTCAGC
* *
16153504 GCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
16153535 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGACCGGC
1 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGAGGATCGAC
* * * * * * * *
16153598 AGCACGTAGAGGGGGATCGGGTCAATCCTCGGCTTGCGCATTATACCTCTCCGACCAGTTTAGTG
64 AGCACGTAGGGGGGGATCGAGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTCAGCG
*
16153663 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
16153693 GCATACGGAGTTCATTCCCCA-TCTAAGATTAGA-CGGGATCGAGGGTTGCGGCAGTAGGATTGA
1 GCATATGGAGTTCATT-CCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAG-AGGATCGA
* * * * * *
16153756 TAGCACGTAGGGGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGC
63 CAGCACGTAGGGGGGGATCGAGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTCAGC
* * * *
16153821 ACCCGCACGCTCATTTCGTCGATTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16153852 GCATATAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
16153900 TGCAGCAGGA
Statistics
Matches: 290, Mismatches: 63, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 19 0.07
158 147 0.51
159 120 0.41
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGAGGATCGACAG
CACGTAGGGGGGGATCGAGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACTAGCTCAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16154059 original size:26 final size:26
Alignment explanation
Indices: 16154019--16154074 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
16154009 TGGGTTGACT
* *
16154019 TAAGCATACGTAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
* *
16154045 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
16154071 TAAG
1 TAAG
16154075 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:16155612 original size:26 final size:26
Alignment explanation
Indices: 16155582--16155634 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16155572 TTTGACATAG
16155582 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
**
16155608 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16155634 G
1 G
16155635 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16155925 original size:159 final size:157
Alignment explanation
Indices: 16155708--16157076 Score: 683
Period size: 159 Copynumber: 8.5 Consensus size: 157
16155698 CTCGATTTGA
* * * * *
16155708 GCATTCTGCCTCTCAGGCC-GATTGAGTC-CCCGCACGCTCGTTTCATCGGTTGGCTTAGGTATA
1 GCATTCTGCCTCTCCGGCCAG-CTGAG-CACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
*
16155771 GGGAGTTCATTCCACGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCGGGACC-AGTAGCAC
64 GGGAGTTCATTCCACGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGA-TAGCAC
*
16155835 GCTGAAGGGGATCAAGCCAATCCCTGGCTTGC
128 GC--AAGGGGATCAGGCCAATCCCTGGCTTGC
* * * * * * **
16155867 GCATTATGCCTTTCCGGCAAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACA
1 GCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
* ** * * *
16155932 GAGTTCATGCC-CAGTCTAAG-ATCAGACC-AGACCAAGGGTTGTGGCAGCAGGATCGATAGTAC
66 GAGTTCATTCCAC-GTCTAAGCCCCA-ACCGA-ACCGAGGGTTGTGGCAGCAGGACCGATAGCAC
* ** * *
16155994 GCAAGCTGGGATCAGGTCGGTCCCTGACTTAC
128 GCAAG--GGGATCAGGCCAATCCCTGGCTTGC
* * * *
16156026 GCATTCTGCGTCTCCGGCCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
* * * * * * ** *
16156091 GAGTTCATTCCATGTCTAAGCGCCAGCAGGATCGAGGGTTGTGGCAGTGGGACCGACAGCACGCA
66 GAGTTCATTCCACGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGATAGCACGC-
* * **
16156156 AAGGGGGGTCGGGGTAAT-CCTCGGCTTGC
130 AA-GGGGATCAGGCCAATCCCT-GGCTTGC
* * * * *
16156185 ACATTCTGCCTCTCCGACCAGTTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATATG
1 GCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
* ** * *
16156250 GAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGCT-GCAGCAGGACC-AGTAGCAGG
66 GAGTTCATTCCACGTCTAAGCCCCAACCGAACCGAGGGTTG-TGGCAGCAGGACCGA-TAGC---
* * * * *
16156313 AATGGCAGCACGTAGGGGGGGACCAGGCCGATCCCCGACTTAC
126 -A---C-GCA---A---GGGGATCAGGCCAATCCCTGGCTTGC
* * * * * ** * *
16156356 GTATTCTACCTCTCCGGCCTGGCTGAGCACCCGTACACTTGTTTCATGGGTTGGCTTAGCCATAC
1 GCATTCTGCCTCTCCGGCC-AGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAG
* * * * * * * * * *
16156421 AGAGTTCATTCCATGTCTAAGTCCCAGCC-AGATCGAGGGTTCTGCCAG-TGACACCGACAGCAC
65 GGAGTTCATTCCACGTCTAAGCCCCAACCGA-ACCGAGGGTTGTGGCAGCAG-GACCGATAGCAC
* *** *
16156484 GCAGAAGGGGA-CCGAGTTGATCCTTGGCTTGC
128 GC--AAGGGGATCAG-GCCAATCCCTGGCTTGC
* * * ** * * ** * * * * *
16156516 GCATTATACCTATCCGATCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAAGCATACG
1 GCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
* ** ** * * * * * *
16156581 AAGTTCATTCCTA-GTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATC-AGCAGCACC
66 GAGTTCATTCC-ACGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGA-TAGCACG
** ** *
16156644 CAAGGGGGGATTGGGCCGGTCCTTGGCTTGC
129 CAA--GGGGATCAGGCCAATCCCTGGCTTGC
* * * * * **
16156675 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTCGGCATACA
1 GCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
* ** * * * * *
16156740 AAGTTCATTCC-CAGTCTAAG-ATCAGACC-AGACCAAGGGTTGCGGCAGTAGGATCGACAGCAC
66 GAGTTCATTCCAC-GTCTAAGCCCCA-ACCGA-ACCGAGGGTTGTGGCAGCAGGACCGATAGCAC
* * ** *
16156802 GTAGAGGGGA-CTGGGCCGGTCCCTAGCTTGC
128 GCA-AGGGGATC-AGGCCAATCCCTGGCTTGC
* * * * * * *
16156833 GCATTCTGCCTCTCCGACC-GACTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGAATAA
1 GCATTCTGCCTCTCCGGCCAG-CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAG
* * * **
16156897 GGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGTTGTGGTAGTGGGACCGATAGCACG
65 GGAGTTCATTCCACGTCTAAGCCCCAACCGA-ACCGAGGGTTGTGGCAGCAGGACCGATAGCACG
* * * **
16156961 CAGAGGGGGATCGGGTCGATCCCCAGCTTGC
129 CA-A-GGGGATCAGGCCAATCCCTGGCTTGC
* ** * * * * * * ** * **
16156992 ACATTAGGCCTCTCTGGTCGGCTTAGCGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACA
1 GCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
16157057 GAGTTCATTCCTA-GTCTAAG
66 GAGTTCATTCC-ACGTCTAAG
16157077 GTTAGACCAG
Statistics
Matches: 938, Mismatches: 213, Indels: 118
0.74 0.17 0.09
Matches are distributed among these distances:
157 6 0.01
158 136 0.14
159 622 0.66
160 45 0.05
161 1 0.00
163 2 0.00
164 2 0.00
165 1 0.00
166 3 0.00
167 2 0.00
168 1 0.00
169 1 0.00
171 32 0.03
172 83 0.09
173 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCACGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCA
AGGGGATCAGGCCAATCCCTGGCTTGC
Found at i:16156215 original size:318 final size:315
Alignment explanation
Indices: 16155615--16157076 Score: 1037
Period size: 318 Copynumber: 4.6 Consensus size: 315
16155605 TAAGCATATG
* * *
16155615 GAGTTCATTCCCAGTCTAAGATC-GAATCAGACCGAGGGTTGTGGCAGCAGGATCGATCGTACGC
1 GAGTTCA-TCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
* * * **
16155679 -AGGGGGGA-CCGTGTCGAT-CCTCGATTTGA-GCATTCTGCCTCTCAGGCCGATTGAGTC-CCC
64 AAGGGGGGATCAG-GTCGATCCCT-GACTT-ACGCATTCTGCCTCTCCGGCCGGCTGAG-CACCC
* * * * ** * *
16155739 GCACGCTCGTTTCATCGGTTGGCTTAGGTATAGGGAGTTCATTCCACGTCTAAGCCCCAACC-GA
125 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-CCCAGCCAG-
* * * * **
16155803 ACCGAGGGTTGTGGCAGCGGGACC-AGTAGCACGCTGAAGGGGATCAAGCCAATCC-CTGGCTTG
188 ACCGAGGGTTGTGGCAGTGGGACCGA-CAGCACGC-AAAGGGGATCGAGGTAATCCTC-GGCTTG
* * * *
16155866 CGCATTATGCCTTTCCGGCAAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
250 CGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
16155931 A
315 A
* *
16155932 GAGTTCATGCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGATAGTACGCA
1 GAGTTCAT-CCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCA
** * * * *
16155997 AGCTGGGATCAGGTCGGTCCCTGACTTACGCATTCTGCGTCTCCGGCCAGCTGAGCGCCCGCACG
65 AGGGGGGATCAGGTCGATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
* ** *
16156062 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCCAG-CAGGATCGA
130 CTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC-CCAGCCA-GACCGA
* * * *
16156126 GGGTTGTGGCAGTGGGACCGACAGCACGCAAAGGGGGGTCGGGGTAATCCTCGGCTTGCACATTC
193 GGGTTGTGGCAGTGGGACCGACAGCACGCAAA-GGGGATCGAGGTAATCCTCGGCTTGCGCATTA
* * * * **
16156191 TGCCTCTCCGACCAGTTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATATG
257 TGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
* ** * * *
16156250 GAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGCT-GCAGCAGGACCAGTAGCAGG
1 GAGTTCATCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTG-TGGCAGCAGG---A-T--C--G
* * * * * * *
16156313 AATGGCAGCACGTAGGGGGGGACCAGGCCGATCCCCGACTTACGTATTCTACCTCTCCGGCCTGG
55 -AT---AGCACGCAAGGGGGGATCAGGTCGATCCCTGACTTACGCATTCTGCCTCTCCGGCC-GG
* * ** * *
16156378 CTGAGCACCCGTACACTTGTTTCATGGGTTGGCTTAGCCATACAGAGTTCATTCCATGTCTAAGT
115 CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-
* * * ** * * *
16156443 CCCAGCCAGATCGAGGGTTCTGCCAGTGACACCGACAGCACGCAGAAGGGGACCGAGTTGATCCT
179 CCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCA-AAGGGGATCGAGGTAATCCT
* * * * * ** * *
16156508 TGGCTTGCGCATTATACCTATCCGATCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTA
243 CGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTA
*
16156573 AGCATAC-
308 GGCATACA
* * * * * * *
16156580 GAAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATC-AGCAGCACC
1 G-AGTTCA-TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA-TAGCACG
** * * * * * *
16156644 CAAGGGGGGATTGGGCCGGTCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCA
63 CAAGGGGGGATCAGGTCGATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCA
* * * **
16156709 CGCTCATTTCGTGGGTTGACTTCGGCATACAAAGTTCATTCCCA-GTCTAAGATCAGACCAGACC
128 CGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCAG-CCAGACC
* * * * * * *** *
16156773 AAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGGA-CTG-GGCCGGTCC-CTAGCTTGCGC
191 GAGGGTTGTGGCAGTGGGACCGACAGCACGCAAAGGGGATC-GAGG-TAATCCTC-GGCTTGCGC
* * * * * * * *
16156835 ATTCTGCCTCTCCGACC-GACTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGAATA-A
253 ATTATGCCTCTCCGACCAG-CTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
* ** * ** *
16156897 GGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGTGGGACCGATAGCACG
1 -GAGTTCATCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACG
* * * * ** * * * *
16156961 C-AGAGGGGGATCGGGTCGATCCC-CAGCTTGCACATTAGGCCTCTCTGGTCGGCTTAGCGCCCG
63 CAAG-GGGGGATCAGGTCGATCCCTGA-CTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
* * *
16157024 AACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAG
126 CACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAG
16157077 GTTAGACCAG
Statistics
Matches: 901, Mismatches: 192, Indels: 104
0.75 0.16 0.09
Matches are distributed among these distances:
316 11 0.01
317 264 0.29
318 312 0.35
319 57 0.06
321 2 0.00
322 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 3 0.00
328 1 0.00
330 47 0.05
331 192 0.21
332 8 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (315 bp):
GAGTTCATCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAA
GGGGGGATCAGGTCGATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGC
TCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGCCAGACCGAGGG
TTGTGGCAGTGGGACCGACAGCACGCAAAGGGGATCGAGGTAATCCTCGGCTTGCGCATTATGCC
TCTCCGACCAGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
Found at i:16157175 original size:13 final size:13
Alignment explanation
Indices: 16157157--16157181 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16157147 GCGCATTCTG
16157157 CCTCTCTGATCGA
1 CCTCTCTGATCGA
16157170 CCTCTCTGATCG
1 CCTCTCTGATCG
16157182 GTTGAGCGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.16, T:0.32
Consensus pattern (13 bp):
CCTCTCTGATCGA
Found at i:16157250 original size:25 final size:26
Alignment explanation
Indices: 16157220--16157271 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16157210 GTGGACTTAG
*
16157220 GCATACAGATTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16157245 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16157271 G
1 G
16157272 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16158332 original size:26 final size:26
Alignment explanation
Indices: 16158296--16158348 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16158286 GTTGACTTAG
16158296 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16158322 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16158348 G
1 G
16158349 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16159042 original size:26 final size:26
Alignment explanation
Indices: 16159006--16159055 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16158996 ATTGACATAG
16159006 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16159032 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
16159056 CAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16159732 original size:26 final size:26
Alignment explanation
Indices: 16159703--16159755 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16159693 GTTGGCTTAG
16159703 GCATACGGAATTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
* *
16159729 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
16159755 G
1 G
16159756 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:16160550 original size:26 final size:26
Alignment explanation
Indices: 16160520--16160572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16160510 GTTGACTTAG
*
16160520 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16160546 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16160572 G
1 G
16160573 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16160921 original size:158 final size:158
Alignment explanation
Indices: 16160556--16160937 Score: 421
Period size: 158 Copynumber: 2.4 Consensus size: 158
16160546 GCATACAGAG
* *
16160556 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACGATCGGTAGCACGCAGGG
1 TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGG
* * * * * * * **
16160621 GGGATCGGGCTGATCTATGGCTTGCGTATTTTGCCTCTCCGGCCGGCTGAGTGCCCTCACACCCA
66 GAGATCGGGCCGATCCATGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACACCCA
* * * *
16160686 TTTCGTGGGTTGGCTTAGGCATAGGGAG
131 TTTCGTGGGTTGACTTAGGCATACGAAA
* * * *
16160714 TTCATT-CCATGTCTAAG--CGATAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTATCATGCA
1 TTCATTCCCA-GTCTAAGATCGA-A-CCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCA
* * *
16160776 GAGGGAGA-CGGGCCGATCCCTGGCTTGTGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGAACA
63 G-GGGAGATCGGGCCGATCCATGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACA
*
16160840 CTCATTTCGTGGGTTGACTTAGGCATACGAAA
127 CCCATTTCGTGGGTTGACTTAGGCATACGAAA
** * * * * **
16160872 TTCATTCCCAGTCTAAGATCGAACCAAACCAAGGGTTGCGATAGTAGGATTGACAGCACGCAGGG
1 TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGG
16160937 G
66 G
16160938 GGACTGGGTT
Statistics
Matches: 182, Mismatches: 35, Indels: 15
0.78 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 7 0.04
158 161 0.88
159 9 0.05
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
TTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGG
GAGATCGGGCCGATCCATGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACACCCA
TTTCGTGGGTTGACTTAGGCATACGAAA
Found at i:16161056 original size:26 final size:26
Alignment explanation
Indices: 16161020--16161072 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16161010 GTTGGCTTAG
*
16161020 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
16161046 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
16161072 G
1 G
16161073 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:16161230 original size:26 final size:26
Alignment explanation
Indices: 16161200--16161252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16161190 GTTGACTTAG
*
16161200 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16161226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16161252 G
1 G
16161253 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16162579 original size:158 final size:156
Alignment explanation
Indices: 16162100--16162593 Score: 416
Period size: 158 Copynumber: 3.1 Consensus size: 156
16162090 AAGCATACGA
* *** * * * * *
16162100 AGTTCATTCCCTGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAA
1 AGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAG-AGGATCGATAGCACGCAG
* * ** *
16162165 GGGGGACCGGGCTGATCCTCGA-CTTACGCATTCTGCCTCTCTAGTCGGCTGAGCTCCCGCACGC
65 GGGGGACC-GGCCGATCC-CAAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
* * **
16162229 CCATTTTATGGGTTGGCTTAGGCATAGGG
128 TCATTTTGTGGGTTGGCTTAGGCATAAAG
** * ** * * * * *
16162258 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGAAGCGAGACCGGTAGCATGCAG
1 AGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGAG-GATCGATAGCACGCAG
** * * ** * * * ** * * * *
16162323 AATGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTTTCCGACCGGCTCAGTGCCCGAACGT
65 -GGGGGA-CCGGCCGATCCCAAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
* * * *
16162388 TCGTTTCGTGGGTTGACTTAGGCATACAG
128 TCATTTTGTGGGTTGGCTTAGGCATAAAG
* *
16162417 AGTTCATTCCCA-GTCTAAGATCAAACCGGACCAAGGGTTGTGGCAGTAGGATTGATAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAG-AGGATCGATAGCACGCA
* * *
16162481 GGGGGGACCAGGTCGGTCCCAAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCACGCACGC
64 GGGGGGACC-GGCCGATCCCAAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
*
16162546 TCATTTTGTGGGTTGGCGTAGGCATAAAG
128 TCATTTTGTGGGTTGGCTTAGGCATAAAG
16162575 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
16162594 CATAAGGAGT
Statistics
Matches: 249, Mismatches: 79, Indels: 16
0.72 0.23 0.05
Matches are distributed among these distances:
157 5 0.02
158 129 0.52
159 110 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGAGGATCGATAGCACGCAGG
GGGGACCGGCCGATCCCAAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCA
TTTTGTGGGTTGGCTTAGGCATAAAG
Found at i:16162603 original size:26 final size:26
Alignment explanation
Indices: 16162567--16162619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16162557 GTTGGCGTAG
16162567 GCATAAAGAGTTCATTCC-ATGTCTAA
1 GCATAAAGAGTTCATTCCTA-GTCTAA
*
16162593 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAAGAGTTCATTCCTAGTCTAA
16162619 G
1 G
16162620 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCTAGTCTAA
Found at i:16162804 original size:195 final size:196
Alignment explanation
Indices: 16162472--16162835 Score: 504
Period size: 195 Copynumber: 1.9 Consensus size: 196
16162462 GTAGGATTGA
* *
16162472 TAGCACGCAGGGGGGACCAGGTCGGTCCCAAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
1 TAGCACGCAGGGGGGACCAGGTCGATCCCAAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCG
** * *
16162537 CACGCACGCTCATTTTGTGGGTTGGCGTAGGCATAAAGAGTTCATTCCATGTCTAAGCATAAGGA
66 CACGCACGCTCATTTCATGGGTTGACGTAGGCATAAAGAGTTCATCCCATGTCTAAGCATAAGGA
*
16162602 GTTCATTCCTAGTCTAAGAT-TGGACC-GACTGAGGGTTGCGACAGCAAGACCAGCAGCAGGATC
131 GTTCATTCCCAGTCTAAGATGT-GACCAGACTGAGGGTTGCGACAGCAAGACCAGCAGCAGGATC
16162665 GG
195 GG
* * *
16162667 TAGCACGCAGGGGGGACC-GAGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCAGTCTGCTGAGC
1 TAGCACGCAGGGGGGACCAG-GTCGATCCCAAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGC
* * * * * *
16162731 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT-ACGATGTTCATCCCCA-GTCTAAGTATAC
65 GCACGCACGCTCATTTCATGGGTTGACGTAGGCATAAAGA-GTTCAT-CCCATGTCTAAGCATAA
*
16162794 GGAGTTCATTCCCAGTCTAGGATGTGACCAGACTGAGGGTTG
128 GGAGTTCATTCCCAGTCTAAGATGTGACCAGACTGAGGGTTG
16162836 TGGTAGCAAG
Statistics
Matches: 147, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
194 4 0.03
195 127 0.86
196 16 0.11
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
TAGCACGCAGGGGGGACCAGGTCGATCCCAAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCG
CACGCACGCTCATTTCATGGGTTGACGTAGGCATAAAGAGTTCATCCCATGTCTAAGCATAAGGA
GTTCATTCCCAGTCTAAGATGTGACCAGACTGAGGGTTGCGACAGCAAGACCAGCAGCAGGATCG
G
Found at i:16163141 original size:26 final size:26
Alignment explanation
Indices: 16163107--16163156 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16163097 AGCTTAGGCA
*
16163107 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGAAGTTCATTCCCA-GTCTAAGCT
16163133 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16163157 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:16163705 original size:26 final size:26
Alignment explanation
Indices: 16163669--16163720 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16163659 GTTGGCTTAG
*
16163669 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
16163695 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16163721 TATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16164243 original size:26 final size:26
Alignment explanation
Indices: 16164207--16164259 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16164197 GTTGGCTTAG
16164207 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATGTCTAA
*
16164233 GCATAAGGAGTTCATTCCTTGTCTAA
1 GCATAAGGAGTTCATTCCATGTCTAA
16164259 G
1 G
16164260 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGTCTAA
Found at i:16164791 original size:26 final size:26
Alignment explanation
Indices: 16164754--16164803 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16164744 GGCTTAGGCA
*
16164754 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGCTCATTCCCA-GTCTAAGCT
16164780 TACGGAGCTCATTCCCAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
16164804 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCT
Found at i:16165343 original size:26 final size:26
Alignment explanation
Indices: 16165307--16165359 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16165297 GTTGGCTTAG
*
16165307 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16165333 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16165359 G
1 G
16165360 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16165697 original size:26 final size:26
Alignment explanation
Indices: 16165667--16165719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16165657 GTTGACTTAG
16165667 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16165693 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16165719 G
1 G
16165720 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16166173 original size:158 final size:156
Alignment explanation
Indices: 16165693--16166193 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 156
16165683 CCCAGTCTAA
* * * * **
16165693 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
16165758 GCACGCAGGGGGGA-TCAGGTCGATTCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCTC
66 GCACGCAGGGGGGACT-AGGTCGA-TCCCGGCTTACGCATTCTGCCTCTCAGATAG-CTAAGCGC
* * *
16165822 CCGCATGCCCGTTTCATGGGTTGGCTTAG
128 CCGAACGCTCGTTTCATGGGTTGGCTTAG
* ** ** * *
16165851 GCATAGGGAGTTCATT-CCATGTCT-AAGCCCTAGCCAGACCGAGGGTTGTGGCAGC-GAAACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAAATCGGA-CCAGACCGAGGGTTGTGGCAGCAG-GATCG
* ** * * * * * **
16165913 ACAGCACGTAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCAGCTCAA
63 ACAGCACGCAG-GGGGGACTAGGTCGAT-CCCGGCTTACGCATTCTGCCTCT-CAGATAGCT-AA
* *
16165978 -CGCCCGAACACTCGTTTCATGGGTTGACTTAG
124 GCGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * *
16166010 GCATACTGAGCTCATTCCCAATCTAAAATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
*
16166075 GCACGCAGGGGGGACTTGGTCGATCCCTGGCTTACGCATTCTGCCTCTCTAG-TAGCCTAAGCGC
66 GCACGCAGGGGGGACTAGGTCGATCCC-GGCTTACGCATTCTGCCTCTC-AGATAG-CTAAGCGC
* * * *
16166139 CTGTACGCTCTTTTCGTGGGTTGGCTTAG
128 CCGAACGCTCGTTTCATGGGTTGGCTTAG
16166168 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16166194 GGATACGGAG
Statistics
Matches: 269, Mismatches: 58, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 18 0.07
158 129 0.48
159 110 0.41
160 12 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACTAGGTCGATCCCGGCTTACGCATTCTGCCTCTCAGATAGCTAAGCGCCCG
AACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16166199 original size:26 final size:26
Alignment explanation
Indices: 16166170--16166220 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16166160 TGGCTTAGGC
16166170 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
16166196 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16166221 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:16166414 original size:26 final size:26
Alignment explanation
Indices: 16166377--16166428 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16166367 GTTGATTTAG
*
16166377 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
**
16166403 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16166429 CATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16166596 original size:26 final size:26
Alignment explanation
Indices: 16166560--16166611 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16166550 ATTGGCTTAG
*
16166560 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16166586 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16166612 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16167612 original size:159 final size:158
Alignment explanation
Indices: 16167324--16167821 Score: 522
Period size: 159 Copynumber: 3.1 Consensus size: 158
16167314 GAAGCAAACA
* * * * * *
16167324 GAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTATAGTAGCAGGCTCGACAGCATG
1 GAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACG
* * * *
16167387 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGCTAAGCGCCCGCAC
65 CAGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTAA-CGCCCGCAC
* * *
16167452 GCTCGTGTCATGGGTTGGCTTAGGCATAGG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * *
16167482 GAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGCTGTGGTAGCGGGATCGACATCACGC
1 GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
* * *
16167546 AGAGAGGGATCGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGATCAGCTCAACGCCCGCAC
66 AG-GGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCT-AACGCCCGCAC
* *
16167611 GCTCGTTTTGTGGGTTGACTTAGGCATACG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * ** * *
16167641 GAGTTCATTCCCA-GTCTAAG-ATCAGATCGAATCGAGGGTTGTGGTAGCAATATCGATAGCAGG
1 GAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACG
* * * * *
16167704 TAGGTGGGGATCGGGCCAATCCCTGGCTTGCTCATTCTACCTCTCCGA-CTGGCTGAACGCCCGT
65 CAGG-GGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATC-GGCT-AACGCCCGC
* * *
16167768 GCGCTCATTTCGTGGGCTGGCTTAGGCATACG
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
16167800 GAGTTCATTTCGTGTCTAAGCA
1 GAGTTCATTCCATGTCTAAGCA
16167822 TACGGAGTTC
Statistics
Matches: 280, Mismatches: 50, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 54 0.19
159 217 0.77
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGC
AGGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCTAACGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:16167843 original size:26 final size:26
Alignment explanation
Indices: 16167793--16167845 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16167783 GCTGGCTTAG
* ***
16167793 GCATACGGAGTTCATTTCGTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16167819 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16167845 G
1 G
16167846 ATCAAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16168038 original size:26 final size:26
Alignment explanation
Indices: 16167988--16168040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16167978 GTTGACTTAG
*
16167988 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
16168014 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
16168040 G
1 G
16168041 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:16168361 original size:26 final size:25
Alignment explanation
Indices: 16168331--16168382 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16168321 GTTGGCTTAG
* *
16168331 GCATACGGAGTTCGTTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
16168357 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
16168382 G
1 G
16168383 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:16169089 original size:25 final size:26
Alignment explanation
Indices: 16169038--16169089 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16169028 GTTGACTTAG
16169038 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16169064 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16169089 G
1 G
16169090 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16169431 original size:158 final size:157
Alignment explanation
Indices: 16169294--16169589 Score: 364
Period size: 158 Copynumber: 1.9 Consensus size: 157
16169284 AGCATGTAGA
* *
16169294 GGAGGATCGGGCC-GATCCTCAACTTGCGCATTATGCCTCTCGGT-CAGCTCAATGCCCAAACGC
1 GGAGGATCGGGCCAG-TCCTCAACTTGCGCATTATGCCTCTC-CTACAGCTCAACGCCCAAACGC
* * *
16169357 TCGTTCCGTGGGTTGACTTTGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGG
64 TCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC-AGACCGAGG
* *
16169422 GTTGCGGCAG-TAGGATCAACAGCACACAT
128 GTTGCGGCAGCGAGGACCAACAGCACACAT
* * * * * ***
16169451 GGGGGATCGGGCCAGTCCTCAACTTGCTCATTCTGCCTCTCCTACCAGCTGAGCGCCTGCACGCT
1 GGAGGATCGGGCCAGTCCTCAACTTGCGCATTATGCCTCTCCTA-CAGCTCAACGCCCAAACGCT
* * * *
16169516 CGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGT
65 CGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGT
16169581 TGCGGCAGC
130 TGCGGCAGC
16169590 CAAACCGGAC
Statistics
Matches: 118, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
156 1 0.01
157 54 0.46
158 63 0.53
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
GGAGGATCGGGCCAGTCCTCAACTTGCGCATTATGCCTCTCCTACAGCTCAACGCCCAAACGCTC
GTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTT
GCGGCAGCGAGGACCAACAGCACACAT
Found at i:16170527 original size:26 final size:26
Alignment explanation
Indices: 16170497--16170549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16170487 GTTGACTTAG
16170497 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
16170523 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16170549 G
1 G
16170550 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16171395 original size:26 final size:26
Alignment explanation
Indices: 16171365--16171417 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16171355 GTTGACTTAG
16171365 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16171391 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16171417 G
1 G
16171418 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16171591 original size:26 final size:26
Alignment explanation
Indices: 16171562--16171613 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16171552 GTTGACTTAG
16171562 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
16171588 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
16171614 TATCGAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:16171674 original size:197 final size:197
Alignment explanation
Indices: 16171325--16171701 Score: 479
Period size: 197 Copynumber: 1.9 Consensus size: 197
16171315 CCTCTCCGAT
* * **
16171325 CGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTA
1 CGGTTGAGCGCCCGCACGCTCATTTCACGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTA
* * * * * * * *
16171390 AGCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGACAGCAGGACCAGC
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAAGACCAGC
* * * *
16171455 AGCACATAGGGGCGATCGGGTCGATCGTC-GACTTGTGCATTCTGCCTCTCCAGTTGACTTCTCT
131 AGCACACAGGGGCGACCGGGTCGATCCTCAG-CTTATGCATTCTGCCTCTCCAGTTGACTTCTCT
16171519 GAC
195 GAC
* * *
16171522 CGGTTGAGCGCCCGCACGGTCGTTTCACGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACGCTCATTTCACGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTA
* ** *
16171587 AGCATACAGAGTTCATTCCCAGTCTAATATCGAACCAGACCGAGGGTTGCGGTAGCAAGATC-GA
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAAGACCAG-
* * * *
16171651 TAGCACCCAGGGGGGACCGGGTCGATCCTCAGCTTATGTATTCTGCCTCTC
130 CAGCACACAGGGGCGACCGGGTCGATCCTCAGCTTATGCATTCTGCCTCTC
16171702 TGGTCGGTTG
Statistics
Matches: 151, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
196 1 0.01
197 149 0.99
198 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
CGGTTGAGCGCCCGCACGCTCATTTCACGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAAGACCAGC
AGCACACAGGGGCGACCGGGTCGATCCTCAGCTTATGCATTCTGCCTCTCCAGTTGACTTCTCTG
AC
Found at i:16171882 original size:158 final size:160
Alignment explanation
Indices: 16171714--16172090 Score: 453
Period size: 158 Copynumber: 2.4 Consensus size: 160
16171704 GTCGGTTGAG
* * * * *
16171714 CGCCCACACGCCCGTTTCATGGGTTGGCTCAGGCATAGATAGTTCATTCCATGTCTAAGCCCCAG
1 CGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAG
16171779 -CCAGA-CAGAGGGTTGTGGCAGCGA-GACCGACAGCACGCAGAGAGGGACCGGGCCAATCCCTG
66 ACCAGATCA-AGGGTTGTGGCAG-GAGGACCGACAGCACGCAGAGAGGGACCGGGCCAATCCCTG
* **
16171841 GCTTGCACATTATGCCTCTCCAACCGG-TTCA
129 GCTTACACATTATGCCTCTCCAACCGGCTGAA
* * * * * *
16171872 CGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTAATTCC-TAGTGTAAG-ATCA
1 CGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCACCA
* * * * **
16171935 GACCAGATCAAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGAGGGATCGGGCCGGTCCCTGG
65 GACCAGATCAAGGGTTGTGGCAGGAGGACCGACAGCACGCAGAGAGGGACCGGGCCAATCCCTGG
* * *
16172000 CTTACGCATTTTGCCTCTCCGACCGGCTGAA
130 CTTACACATTATGCCTCTCCAACCGGCTGAA
* *
16172031 CGCCCACACGATCGTTTCGTGGGTTGGCTTAGG-ATACAGAGTTCATTCCATGTCTAAGCA
1 CGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
16172091 TACAGAGTTC
Statistics
Matches: 182, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
157 5 0.03
158 143 0.79
159 34 0.19
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (160 bp):
CGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAG
ACCAGATCAAGGGTTGTGGCAGGAGGACCGACAGCACGCAGAGAGGGACCGGGCCAATCCCTGGC
TTACACATTATGCCTCTCCAACCGGCTGAA
Found at i:16172100 original size:26 final size:26
Alignment explanation
Indices: 16172064--16172114 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16172054 TTGGCTTAGG
16172064 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
16172090 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16172115 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:16172433 original size:26 final size:26
Alignment explanation
Indices: 16172403--16172455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16172393 GTTGACTTAG
*
16172403 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
* *
16172429 GCATATGGAATTCATTCCCAGTTTAA
1 GCATATGGAATTCATCCCCAGTCTAA
16172455 G
1 G
16172456 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAATTCATCCCCAGTCTAA
Found at i:16173722 original size:159 final size:158
Alignment explanation
Indices: 16173337--16173732 Score: 438
Period size: 159 Copynumber: 2.5 Consensus size: 158
16173327 CCCAGTCTAA
* * * * *
16173337 GTATATGGAGTTCATTCCCAATCTGAGATCAGACCAGACTGAGGGTTGCGACAACAGGATCGGCA
1 GTATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGACA
* * * * * * * *
16173402 GCACGCAGGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
66 GCATGCAGGAGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCACC
*
16173467 CACACATCCGTTTCATGGGTTGGCTTAG
131 CACACATCCGTTTCATGGGTTGACTTAG
* * * ** * * * * * *
16173495 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGGCCGAGGGTTGTGGCAGCGGGACCGA
1 GTATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGA
* * * *
16173558 TAGCATACAGAGAGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGC
64 CAGCATGCAG-GAGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGC
*
16173623 ACCCACAC-GCTCGTTTCATGGGTTGACTTAG
128 ACCCACACATC-CGTTTCATGGGTTGACTTAG
* * *
16173654 GTATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGATTGTGACAGCAAGATTGACA
1 GTATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGACA
16173719 GCATGCAGGAGGGA
66 GCATGCAGGAGGGA
16173733 TTGGATCGGT
Statistics
Matches: 187, Mismatches: 45, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 57 0.30
159 124 0.66
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
GTATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGACAGCAGGATCGACA
GCATGCAGGAGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCACC
CACACATCCGTTTCATGGGTTGACTTAG
Found at i:16174248 original size:159 final size:158
Alignment explanation
Indices: 16174072--16174702 Score: 580
Period size: 159 Copynumber: 4.0 Consensus size: 158
16174062 TGGAACCGAC
* *
16174072 AGCACGCAGAGAGGGACCGAGG-CGATCCTTGGCTTGCGCATTATGCCTCTTCGATTGGCTCAGC
1 AGCACGCAG-GGGGGACCG-GGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGC
* *
16174136 ACCTGGACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
64 ACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
16174201 CAGATCGAAGGTTGCGGCAGCAGGATCGAT
129 CAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * *
16174231 AGCACGTAGGGGTGGACCGGGTCGAT-CTCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGC
1 AGCACGCAGGGG-GGACCGGGCCGATCCT-TGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGC
* * * ** * **
16174295 ACCCGCACGCCCATTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATT-CCATGTCTAAGCCCCAG
64 ACCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG
** * * * *
16174359 -CTGGATCGAGGGTTGTGGCAGCAGGACCGGT
127 ACCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * *
16174390 AACACGCAGAGAGGGACCAGGCCGATCCTAGGCTTGCGCATTATGCCTC-TCGGGTCGGC-CTAG
1 AGCACGCAG-GGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTC-GATCGGCTC-AG
* * * *
16174453 CACGCT-CACACTCGTTTTGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAG
63 CAC-CTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ** *
16174517 ACCGGACCGATGGTTGCGATAGTAGGATCGAT
127 ACCAGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * ** * * *
16174549 AGCACACAGGGGGGGATCGGGCTGGTCCCCGACTTGCGCATTCTGCCT-TTCCGA-CTGGCTAAG
1 AGCACGCA-GGGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTT-CGATC-GGCTCAG
* *
16174612 CGCCTGCACGCTTC-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
63 CACCTGCACGC-TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* **
16174676 ATCAGACCGAGGGTTATGGCAGCAGGA
127 ACCAGACCGAGGGTTGCGGCAGCAGGA
16174703 CTACCAGCAG
Statistics
Matches: 374, Mismatches: 79, Indels: 38
0.76 0.16 0.08
Matches are distributed among these distances:
158 17 0.05
159 343 0.92
160 14 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCAC
CTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGCGGCAGCAGGATCGAT
Found at i:16174426 original size:318 final size:316
Alignment explanation
Indices: 16173902--16174670 Score: 944
Period size: 318 Copynumber: 2.4 Consensus size: 316
16173892 CAGGACCAGT
* * *
16173902 AGCAGGATCGATAGCACATAGGGGGGATCGAGCTGATCCCTGACTTGCGCATTCTCCCTCTTTGG
1 AGCAGGATCGATAGCACATAGGGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTTCGG
* * * * * *
16173967 TCGGCTGAGCATCCACACGCCCGTTTCATGGGTTGGTTTTGGCATAGGGAGTGCATTCCATGTCT
66 TCGGCTGAGCACCCGCACGCCC-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* *
16174032 AAGCCCCAGCTGGATGAAGGGTTGTGGCAGTGGAACCGACAGCACGCAGAGAGGGACCGAGGCGA
130 AAGCCCCAGCTGGATGAAGGGTTGTGGCAGAGGAACCGACAACACGCAGAGAGGGACCGAGGCGA
* * * *
16174097 TCCTTGGCTTGCGCATTATGCCTCTTC-GATTGG-CTCAGCAC-CTGGACGCTCATTTCGTGGGT
195 TCCTAGGCTTGCGCATTATGCCTC-TCGGATCGGCCT-AGCACGCT-CACACTCATTTCGTGGGT
* * * *
16174159 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAAGGTTGCGGC
257 TGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGAC
* * * *
16174219 AGCAGGATCGATAGCACGTAGGGGTGGACCGGG-TCGATCTCTGGCTTGCGCATTCTGCCTCTTC
1 AGCAGGATCGATAGCACATAGGGG-GGATCGGGCT-GATCCCTGACTTGCGCATTCTGCCTCTTC
* **
16174283 GGTCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGT
64 GGTCGGCTGAGCACCCGCACGCCC-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
**
16174348 CTAAGCCCCAGCTGGATCG-AGGGTTGTGGCAGCAGG-ACCGGTAACACGCAGAGAGGGACC-AG
128 CTAAGCCCCAGCTGGAT-GAAGGGTTGTGGCAG-AGGAACCGACAACACGCAGAGAGGGACCGAG
* * *
16174410 GCCGATCCTAGGCTTGCGCATTATGCCTCTCGGGTCGGCCTAGCACGCTCACACTCGTTTTGTGG
191 G-CGATCCTAGGCTTGCGCATTATGCCTCTCGGATCGGCCTAGCACGCTCACACTCATTTCGTGG
* * *
16174475 GTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGTTGCGAT
255 GTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGAC
* * * * *
16174537 AGTAGGATCGATAGCACACAGGGGGGGATCGGGCTGGTCCCCGACTTGCGCATTCTGCCT-TTCC
1 AGCAGGATCGATAGCACATA-GGGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTTCG
* * * * * *
16174601 GACTGGCTAAGCGCCTGCACGCTTCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-G
65 GTC-GGCTGAGCACCCGCACGC-CCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATG
16174665 TCTAAG
127 TCTAAG
16174671 ATCAGATCAG
Statistics
Matches: 386, Mismatches: 53, Indels: 25
0.83 0.11 0.05
Matches are distributed among these distances:
317 34 0.09
318 336 0.87
319 16 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (316 bp):
AGCAGGATCGATAGCACATAGGGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTTCGG
TCGGCTGAGCACCCGCACGCCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCTGGATGAAGGGTTGTGGCAGAGGAACCGACAACACGCAGAGAGGGACCGAGGCGAT
CCTAGGCTTGCGCATTATGCCTCTCGGATCGGCCTAGCACGCTCACACTCATTTCGTGGGTTGAC
TTAGGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGAC
Found at i:16174712 original size:12 final size:12
Alignment explanation
Indices: 16174695--16174726 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
16174685 AGGGTTATGG
16174695 CAGCAGGACTAC
1 CAGCAGGACTAC
16174707 CAGCAGGACTAC
1 CAGCAGGACTAC
*
16174719 CAACAGGA
1 CAGCAGGA
16174727 TCGGTAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.31, G:0.25, T:0.06
Consensus pattern (12 bp):
CAGCAGGACTAC
Found at i:16174872 original size:183 final size:183
Alignment explanation
Indices: 16174540--16174877 Score: 463
Period size: 183 Copynumber: 1.8 Consensus size: 183
16174530 TTGCGATAGT
** *
16174540 AGGATCGATAGCACACAGGGGGGGATCGGGCTGGTCCCCGACTTGCGCATTCTGCCTTTCCGACT
1 AGGATCGATAGCACACAGGGGGGGATCGGGCTAATCCCCGACTTGCGCATTCTGCCTCTCCGACT
* *
16174605 GGCTAAGCGCCTGCACGCTTCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 GACTAAGCGCCAGCACGCTTCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16174670 GATCAGATCAGACCGAGGGTTATGGCAGCAGGACTACCAGCAGGACTACCAAC
131 GACCAGATCAGACCGAGGGTTATGGCAGCAGGACTACCAGCAGGACTACCAAC
* * *
16174723 AGGATCGGTAGCACGA-AGGGGGGGA-CTGGGCTAATCCTCGGCTTGCGCATTCTGCCTCTCCGA
1 AGGATCGATAGCAC-ACAGGGGGGGATC-GGGCTAATCCCCGACTTGCGCATTCTGCCTCTCCGA
*
16174786 -TCGACTGAGCGCCAGCACGC-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
64 CT-GACTAAGCGCCAGCACGCTTC-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-G
* * *
16174848 TCTAAGCCCCAG-TCGGATCGAGGGTTATGG
126 TCTAAG-ACCAGATCAGACCGAGGGTTATGG
16174878 TTGCAGGATC
Statistics
Matches: 136, Mismatches: 13, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
182 7 0.05
183 125 0.92
184 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (183 bp):
AGGATCGATAGCACACAGGGGGGGATCGGGCTAATCCCCGACTTGCGCATTCTGCCTCTCCGACT
GACTAAGCGCCAGCACGCTTCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GACCAGATCAGACCGAGGGTTATGGCAGCAGGACTACCAGCAGGACTACCAAC
Found at i:16175198 original size:26 final size:26
Alignment explanation
Indices: 16175162--16175215 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
16175152 GTTGGCTGAG
16175162 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16175188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16175214 GC
1 GC
16175216 CCCAGTTGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16175958 original size:194 final size:195
Alignment explanation
Indices: 16175480--16175961 Score: 614
Period size: 195 Copynumber: 2.5 Consensus size: 195
16175470 ATCGGTCCCC
* * * *
16175480 GACTTGTGCATTCTGCCTCTCTGGTTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
1 GACTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAG
* *
16175545 GCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCAAACCGGAC
66 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
* ** * ** *
16175610 TTAGGGTTGTAGCAGCAGGACCAGCAGCAGGATCGACAGCACTTAGGGGGACTGGGCTGATCCTT
131 TGAGGGTTGTAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCGGGCCAATCCTA
** * * * * * *
16175675 GACTTACGCATTCTGCCTCCCTGGCCAGCTGAGCGCCCACACACCCGTTTCCTGGGTTGGCTTAG
1 GACTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAG
* * * *
16175740 GCATACGGAGTTCATTCAATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGAC
66 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
16175805 TGAGGG-T-TACGACAGCAGGACCAGCA-CAGGATCGACAGCACGCAGGGGGACCGGGCCAATCC
131 TGAGGGTTGTA-G-CAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCGGGCCAATCC
16175867 GTA
194 -TA
* * *
16175870 G-TTTGTGCATTCTGCCTCT-TCGGTCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCCTA
1 GACTTGTGCATTCTGCCTCTCT-GGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTA
** *
16175933 GGCATACAAAATTCATTCCATGTCTAAGC
65 GGCATACGGAGTTCATTCCATGTCTAAGC
16175962 CCCAGCCAAA
Statistics
Matches: 244, Mismatches: 39, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
193 3 0.01
194 107 0.44
195 134 0.55
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (195 bp):
GACTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
TGAGGGTTGTAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGACCGGGCCAATCCTA
Found at i:16176301 original size:26 final size:26
Alignment explanation
Indices: 16176265--16176315 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16176255 TGGTTGAGGT
16176265 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
16176291 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16176316 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16176645 original size:524 final size:523
Alignment explanation
Indices: 16175702--16176813 Score: 1535
Period size: 524 Copynumber: 2.1 Consensus size: 523
16175692 TCCCTGGCCA
* * * * * *
16175702 GCTGAGCGCCCACACACCCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
* * **
16175767 CATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTACGACAGCAGGACCAGCAC
66 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACGACAGCAGGACCAGCAC
* * * * *
16175832 AGGATCGACAGCACGCAGGGGGACCGGGCCAATCCGTAGTTTGTGCATTCTGCCTCTTCGGTCGG
131 AGGATCAACAGCACGCAGGGGGACCGGGCCAATCCGTAGCTTGCGCATTCTGCCTCTCCGGTCGA
* * *
16175897 TTGAGCGCCCGCACACTCGTTTCATGGGTTGGCCTAGGCATACAAAATTCATTCCATGTCTAAGC
196 TTGAGCACCCACACACTCGTTTCATGGGTTGGCCTAGGCATACAAAATTCATTCAATGTCTAAGC
* *
16175962 CCCAGCCAAACCCAGGGTTGTGGCAGTAGGACCGACAGCGAGATCGGTAGCACGCAGAGGGGGAC
261 CCCAGCCAAACCCAAGGTTGTGGCAGCAGGACCGACAGCGAGATCGGTAGCACGCAGAGGGGGAC
* *
16176027 CAAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCATTTTG
326 CAAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGCACGCTCATTTCG
*
16176092 TGGGTTGACTTATGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGT
391 TGGGTTGACTTATGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGT
* * * * ** * * *
16176157 AGCAGGATCAATAGCACGTAGGGGGGACGGGGCCGGTCCCCGGCTTGCCCATTTTGCCACTCCGA
456 AGCAGGATCAACAGCACGCAGGGGGGACCGAGCCGAACCCCGACGTGCCCATTCTGCCACTCCGA
16176222 CCG
521 CCG
*
16176225 GCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGG-TTGAGGTATACGGAGTTCATTCCATGTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT-AGGTATACGGAGTTCATTCCATGTCTAA
* * *
16176289 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGTCCAAGGGTTACGGCAGCAGGACCAGCA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACGACAGCAGGACCAGCA
* * * *
16176354 CAGGATCAACAGCATGCAGGGGGGATCGGGCCAATCTGTCGCTTGCGCATTCTGCCTCTCCGGTC
130 CAGGATCAACAGCACGCA-GGGGGACCGGGCCAATCCGTAGCTTGCGCATTCTGCCTCTCCGGTC
* * * ** * *
16176419 GATTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATTTCTAA
194 GATTGAGCACCCACACACTCGTTTCATGGGTTGGCCTAGGCATACAAAATTCATTCAATGTCTAA
* * * * * *
16176484 GCCCCAGCCGAACCGAAGGTTGTGGCAGCAGGACTGGCAGCGGGATCGGTAGCATGCAGAGGGGG
259 GCCCCAGCCAAACCCAAGGTTGTGGCAGCAGGACCGACAGCGAGATCGGTAGCACGCAGAGGGGG
** * * *
16176549 ACCAAGTTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCTCGCACGCTCGTTT
324 ACCAAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGCACGCTCATTT
* * * * *
16176614 CGTGGGTTGACTTATGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGGACCAAGGGTTTCG
389 CGTGGGTTGACTTATGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACG
* * * * * *
16176679 GTAGCATGATCGACAGCACGCAGGGGTGACCGAGTCGAACCCCGACGTGCGCATTCTGCCTCTCC
454 GTAGCAGGATCAACAGCACGCAGGGGGGACCGAGCCGAACCCCGACGTGCCCATTCTGCCACTCC
**
16176744 GGTCG
519 GACCG
* *
16176749 ACTGAGCGCCCGCACGCT-GTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
16176813 C
66 C
16176814 CCCAGTTGGA
Statistics
Matches: 512, Mismatches: 74, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
522 2 0.00
523 171 0.33
524 339 0.66
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (523 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTACGACAGCAGGACCAGCAC
AGGATCAACAGCACGCAGGGGGACCGGGCCAATCCGTAGCTTGCGCATTCTGCCTCTCCGGTCGA
TTGAGCACCCACACACTCGTTTCATGGGTTGGCCTAGGCATACAAAATTCATTCAATGTCTAAGC
CCCAGCCAAACCCAAGGTTGTGGCAGCAGGACCGACAGCGAGATCGGTAGCACGCAGAGGGGGAC
CAAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCTCAGCGCCCGCACGCTCATTTCG
TGGGTTGACTTATGCATACGAACTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGT
AGCAGGATCAACAGCACGCAGGGGGGACCGAGCCGAACCCCGACGTGCCCATTCTGCCACTCCGA
CCG
Found at i:16177006 original size:26 final size:26
Alignment explanation
Indices: 16176970--16177021 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16176960 TTGACTTAGA
16176970 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
**
16176996 CATACGGAGTTCATTTCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
16177022 ATCGGACGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:16177378 original size:159 final size:156
Alignment explanation
Indices: 16176995--16177495 Score: 404
Period size: 159 Copynumber: 3.2 Consensus size: 156
16176985 CCCAGTCTAA
* * * **
16176995 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACGGGACTGAGGGTTGCGGTAGCAGTATCTGTA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGAACCGGAC-GAGGGTTGCGGTAGCAGGATCAATA
* * * * *
16177060 GCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCAGTCGACTGAGCGCC
64 GCACGCAAAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCAGTCGACTGAGCGCC
*
16177125 CGCACGCCTGTTTCATGGGTTGGCTTAG
129 CGCACGCCTGTTTCATGGGTTGACTTAG
* ** * * * * * * *
16177153 GCATACGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC-GAGACCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGAACCGGA-CGAGGGTTGCGGTAGCAG-GATCAAT
** * **
16177217 AGCACGCAAAAGTTGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTC-AGCTTCGC
63 AGCACGC-AAAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCAGTCGA-CTGAGC
* *
16177281 GCTCGCACG-CTCGTTTCATGGGTTGACTTAT
126 GCCCGCACGCCT-GTTTCATGGGTTGACTTAG
* * * *
16177312 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTACAGTAGCAGGATCAATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGAACCGGA-CGAGGGTTGCGGTAGCAGGATCAATA
* * * * * * * * * *
16177377 GCACG-TAGGGGGATCAGGCCGATCCTC-GACTTTCACATTCTACCTCTTCGGCCGACTGAGCGC
64 GCACGCAAAGGGGATCGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTTCAGTCGACTGAGCGC
* *
16177440 CCGCACG-CTCGTTTCGT-GGTTTAGCTTAG
128 CCGCACGCCT-GTTTCATGGGTTGA-CTTAG
* * *
16177469 GTATTCGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16177496 CATACAGAGT
Statistics
Matches: 268, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 9 0.03
157 85 0.32
158 51 0.19
159 119 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAACCGGACGAGGGTTGCGGTAGCAGGATCAATAGC
ACGCAAAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCAGTCGACTGAGCGCCCG
CACGCCTGTTTCATGGGTTGACTTAG
Found at i:16184466 original size:158 final size:159
Alignment explanation
Indices: 16184256--16184594 Score: 351
Period size: 158 Copynumber: 2.1 Consensus size: 159
16184246 ACCAAGCGTT
* * * * * * * * * *
16184256 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCGTT-CCATGTCTAAGCCCCAGCCG
1 CGCACGCTCGTTTCGTGGGTTGACTTTGGTATATGGATTTCATTCCCA-GTCTAAGACCAAACCG
* * * * * *
16184320 AACCGAGGGTTGTGGTAGCAGGACCGACAGTACACAGAGGGG-GACCAGGCCGATCCCCGGCTTG
65 AACCGAGGGTTATGGCAGCAAGACCGACAGCACACAG-GGGGAGACCAGGCCGATCCCCGACTTA
*** *
16184384 CGCATTATGCCTCTCCGGTTGGCTTAGTGCC
129 CGCATTATGCCTCTCCGACCGGCTGAGTGCC
* * * *
16184415 CGCATGCTCG-TTCGTGTGTTGACTTTGGTATATGGATTTCATTCCCAGTCTAAGATCAAACCGG
1 CGCACGCTCGTTTCGTGGGTTGACTTTGGTATATGGATTTCATTCCCAGTCTAAGACCAAACCGA
* * * ** * *
16184479 ATCGAGGGTTATGGCAGCAAGATCGATAGCACGTAGGGGGAGATCGGGCCGATCCCCGACTTACG
66 ACCGAGGGTTATGGCAGCAAGACCGACAGCACACAGGGGGAGACCAGGCCGATCCCCGACTTACG
*
16184544 CATTCTGCCTCTCCGACCGGCTGAGTGCC
131 CATTATGCCTCTCCGACCGGCTGAGTGCC
16184573 CGCACGCTCGTTTCGTGGGTTG
1 CGCACGCTCGTTTCGTGGGTTG
16184595 GCTTAGGCAT
Statistics
Matches: 143, Mismatches: 34, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
157 4 0.03
158 118 0.83
159 21 0.15
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
CGCACGCTCGTTTCGTGGGTTGACTTTGGTATATGGATTTCATTCCCAGTCTAAGACCAAACCGA
ACCGAGGGTTATGGCAGCAAGACCGACAGCACACAGGGGGAGACCAGGCCGATCCCCGACTTACG
CATTATGCCTCTCCGACCGGCTGAGTGCC
Found at i:16184637 original size:26 final size:26
Alignment explanation
Indices: 16184601--16184653 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184591 GTTGGCTTAG
16184601 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16184627 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16184653 G
1 G
16184654 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16184828 original size:26 final size:26
Alignment explanation
Indices: 16184798--16184850 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184788 GTTGGCTTAG
*
16184798 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
16184824 GCATATAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
16184850 G
1 G
16184851 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:16185014 original size:196 final size:196
Alignment explanation
Indices: 16184506--16185021 Score: 728
Period size: 197 Copynumber: 2.6 Consensus size: 196
16184496 CAAGATCGAT
* * * * *
16184506 AGCACGTAGGGGGAGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTG
1 AGCACGCAGGGGG-GACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCG
*
16184571 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGA
65 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGA
* * * *
16184636 GTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAACAGCAGGACCAGCAGCAGGATCG
130 GTTAATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAACAGCAGGACCAGCAGCAGAATCG
16184701 GC
195 GC
* * * *
16184703 AGCAAGCAAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCGCTCCG-GTCGGCTGAGC
1 AGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACT-GGCTGAGC
* *
16184767 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAG
64 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAG
* *** * **
16184832 AGTTAATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGACTGGCAGCAGAATC
129 AGTTAATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAACAGCAGGACCAGCAGCAGAATC
16184897 GGC
194 GGC
* * *
16184900 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCGACTGACTGAGCGC
1 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGC
* * * *
16184965 CCGCACGCTCATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
66 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
16185022 CCCAGCTGGA
Statistics
Matches: 281, Mismatches: 35, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
196 102 0.36
197 173 0.62
198 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (196 bp):
AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAG
TTAATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAACAGCAGGACCAGCAGCAGAATCGG
C
Found at i:16185207 original size:26 final size:26
Alignment explanation
Indices: 16185178--16185230 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16185168 GTTGACTTAG
16185178 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * * *
16185204 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16185230 G
1 G
16185231 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16185588 original size:159 final size:156
Alignment explanation
Indices: 16185204--16185633 Score: 369
Period size: 159 Copynumber: 2.7 Consensus size: 156
16185194 CCCAATCTAA
* * *
16185204 GCATACGGATTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCGACA
* * * * * *
16185269 GCACGCAGGGGGGACCGGGCCGATCCCTGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCTC
65 GCACACAGGGGGGACCAGGCCGATCCCAGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCC
* * *
16185334 GTACGCCCGTTTCATGGGTTGGCTTAG
130 GCACGCCCATTTCATGGGTTGACTTAG
* * ** * * * * ** *
16185361 GCATAGGGAGTTCATT-CCACGCCTAAGCCCCA-TCCAGACCGAGGGTTGTGGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTG-CGCAGCAGGATCGA
** * * * *
16185424 CAGCACACAGAGGGGGACCAGGTTGATCCCCAGCTTGCGCATTATGCCTTTTCGACCGGCTTAGC
63 CAGCACACAG-GGGGGACCAGGCCGAT-CCCAGCTTGCGCATTATGCCTCTCCGACCGACTGAGC
** ** *
16185489 GCCCGCACGTTCATTTTGTGGGTTGACTTAT
126 GCCCGCACGCCCATTTCATGGGTTGACTTAG
* *
16185520 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGACA
** * * * * * * *
16185585 GCACGTAAGGGAGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTC
65 GCACACAGGGGGGACCAGGCCGAT-CCCAGCTTGCGCATTATGCCTCTC
16185634 TGGTCGGTTG
Statistics
Matches: 205, Mismatches: 60, Indels: 15
0.73 0.21 0.05
Matches are distributed among these distances:
156 3 0.01
157 49 0.24
158 49 0.24
159 101 0.49
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCGACAG
CACACAGGGGGGACCAGGCCGATCCCAGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCG
CACGCCCATTTCATGGGTTGACTTAG
Found at i:16185708 original size:26 final size:26
Alignment explanation
Indices: 16185678--16185730 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16185668 TTTAGTTTAG
16185678 GCATACGAAGTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16185704 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16185730 G
1 G
16185731 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16187120 original size:26 final size:26
Alignment explanation
Indices: 16187069--16187121 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16187059 TTCGTGGGAG
*
16187069 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
* *
16187095 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAACCTAA
16187121 G
1 G
16187122 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAACCTAA
Found at i:16187410 original size:159 final size:158
Alignment explanation
Indices: 16187135--16187914 Score: 758
Period size: 158 Copynumber: 4.9 Consensus size: 158
16187125 AGATCAGACT
* * * * * **
16187135 GAGGGTTGCGACAGCAGGACCGACAGCACGCAGGGGGGATCGGGTCGAT-CCCGGCTTATGCATT
1 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * * *
16187199 CTGCCCTCTCTAGCCAGCTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
66 ATG-CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
*
16187264 TCATTCCATGTCTAAGCCCCAGCCGGACT
130 TCATTCCATGTCTAAGCCCCAGCCGGACC
* * *
16187293 GAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * ** *
16187358 TATGCCTCTCTGGCCGGGTCAGTGCCCGCACGCTCGTTTCATCTGTTGGCTTAGTCATAGGGAGT
65 TATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
* * *
16187423 TCATTCCATGTATAAGCCACAGTCGGACC
130 TCATTCCATGTCTAAGCCCCAGCCGGACC
* * * * * * * *
16187452 GAGGGTTGTGGCAGTGGGATCGGCAGCATGCTGGGGGGACCGGGCTGATCCCCGACTTACGCATT
1 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * * * * *
16187517 CTGCCTCTCCGACTGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATGGGGAGTT
66 ATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
* *
16187582 CATTCCATGCCTAAGCCCCAGCCAGACC
131 CATTCCATGTCTAAGCCCCAGCCGGACC
* * * * * * * * *
16187610 GAGGGTTATGGTAGAGGGGCCGACAACACGCAAAGGGGGACCAGGCCGATCCCCGGTTTGCGTAT
1 GAGGGTTGTGGCAGCGGGACCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* ** * ** * * **
16187675 TATTCCTCT-TCGGTTGGCTCAGCGCCCGCACGCTTATTTCATGGGTTGACTTATGCATACAGAG
65 TATGCCTCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAG
**
16187739 TTCATTCCCA-GTCTAAG-ATCAGACCGGACC
129 TTCATT-CCATGTCTAAGCCCCAG-CCGGACC
* * * * *
16187769 GAGTGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATT
1 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
* * * * * * *
16187834 TTGCCTCTCTGGCCGGCTGAGCACCCGGACGCTCGTTTCGTAGGTTAGCTTAGGCATACGGAGTT
66 ATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
* **
16187899 TATTCCACATCTAAGC
131 CATTCCATGTCTAAGC
16187915 AGATGGAGGA
Statistics
Matches: 496, Mismatches: 117, Indels: 17
0.79 0.19 0.03
Matches are distributed among these distances:
157 3 0.01
158 243 0.49
159 232 0.47
160 18 0.04
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
ATGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGACC
Found at i:16187704 original size:317 final size:317
Alignment explanation
Indices: 16187095--16187905 Score: 873
Period size: 317 Copynumber: 2.6 Consensus size: 317
16187085 CCCAATCTAA
* ** * * * * * *
16187095 GCATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGACCGACA
1 GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
16187160 GCACGCAGGGGGGATCGGGTCGAT-CCCGGCTTATGCATTCTGCC-CTCTCTAGCCAGCTGAGCG
66 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTC-CGA-CCGGCTGAGCG
* * * *
16187223 CCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCC
* * * * * * * * *
16187288 GGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTG
194 AGACCGAGGGTTATGGCAGAGGGACCGACAACACACAAAGGGGGACCAGGCCGATCCCCGGCTTG
* * * * *
16187353 CGCATTATGCCTCTCTGGCCGGGTCAGTGCCCGCACGCTCGTTTCATCTGTTGGCTTA-
259 CGCATTATGCCTCTCTGGCCGGCTCAGCGCCCGCACGCTCATTTCATCGGTTGACTTAT
** * **
16187411 GTCATAGGGAGTTCATT-CCATGTATAAGCCA-CAG-TCGGACCGAGGGTTGTGGCAGTGGGATC
1 G-CATACAGAGTTCATTCCCA-GTATAAG--ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC
* * * * *
16187473 GGCAGCATGCTGGGGGGACCGGGCTGATCCCC-GACTTACGCATTCTGCCTCTCCGACTGGCTGA
62 GACAGCACGCAGGGGGGACCGGGCCGATCCCCAG-CTTACGCATTCTGCCTCTCCGACCGGCTGA
* *
16187537 GTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGCCTAAGCCCCA
126 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCA
* * * *
16187602 GCCAGACCGAGGGTTATGGTAGAGGGGCCGACAACACGCAAAGGGGGACCAGGCCGATCCCCGGT
191 GCCAGACCGAGGGTTATGGCAGAGGGACCGACAACACACAAAGGGGGACCAGGCCGATCCCCGGC
* * ** * *
16187667 TTGCGTATTATTCCTCT-TCGGTTGGCTCAGCGCCCGCACGCTTATTTCATGGGTTGACTTAT
256 TTGCGCATTATGCCTCTCT-GGCCGGCTCAGCGCCCGCACGCTCATTTCATCGGTTGACTTAT
* *
16187729 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
** * * * *
16187794 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTTTGCCTCTCTGGCCGGCTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * * * *
16187859 CGGACGCTCGTTTCGTAGGTTAGCTTAGGCATACGGAGTTTATTCCA
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
16187906 CATCTAAGCA
Statistics
Matches: 406, Mismatches: 76, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
315 1 0.00
316 8 0.02
317 366 0.90
318 27 0.07
319 4 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCAG
ACCGAGGGTTATGGCAGAGGGACCGACAACACACAAAGGGGGACCAGGCCGATCCCCGGCTTGCG
CATTATGCCTCTCTGGCCGGCTCAGCGCCCGCACGCTCATTTCATCGGTTGACTTAT
Found at i:16189142 original size:26 final size:25
Alignment explanation
Indices: 16189112--16189239 Score: 148
Period size: 26 Copynumber: 4.9 Consensus size: 25
16189102 GTTGGCTTAG
* *
16189112 GCATATGGAGTTCATTCCATGGCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
* *
16189138 GCATACAGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATT-CCAGTCTAA
* *
16189164 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACGGAGTTCAT-TCCAGTCTAA
*
16189190 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-TCCAGTCTAA
16189216 GCATACGGAGTTCATTCCAAGTCT
1 GCATACGGAGTTCATTCC-AGTCT
16189240 TAGATTGGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
25 2 0.02
26 83 0.93
27 4 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:16189239 original size:52 final size:52
Alignment explanation
Indices: 16189112--16189239 Score: 168
Period size: 52 Copynumber: 2.5 Consensus size: 52
16189102 GTTGGCTTAG
* * * * *
16189112 GCATATGGAGTTCATTCCATGGCTAAGCATACAGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATCCCCAGTCTAA
* * *
16189164 GCATACAGAGTTCA-TCTCTAGTCTAAGCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTC-CAAGTCTAAGCATACAGAGTTCATCCCCAGTCTAA
16189216 GCATACGGAGTTCATTCCAAGTCT
1 GCATACGGAGTTCATTCCAAGTCT
16189240 TAGATTGGAT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
51 2 0.03
52 60 0.94
53 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (52 bp):
GCATACGGAGTTCATTCCAAGTCTAAGCATACAGAGTTCATCCCCAGTCTAA
Found at i:16189600 original size:159 final size:159
Alignment explanation
Indices: 16189216--16189616 Score: 398
Period size: 159 Copynumber: 2.5 Consensus size: 159
16189206 CCCAGTCTAA
* * ** * *
16189216 GCATACGGAGTTCATTCCAAGTCTTAGATTGGATCGGACCGAGGGTTGCGGCAACAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* ** * * * * *
16189281 GCACG--TAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
66 GCACGCAGAGGGGGATAGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTCAGCGC
* *
16189344 CCGCACGCCCATTTTGGGGGTTGGCTTAG
131 CCGCACGCCCATTTCGGGGGTTGACTTAG
* * * ** * * * * *
16189373 GCATAGGGAGTTCATT-CCATGTTTATGCCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
16189436 CAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTATGCATTATGCCTCTTCGACTAGCTCAGC
64 TAGCACGCAGAGGGGGATAGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTCAGC
* * *
16189501 GCCCGCACGCTCATTTCGTGGGTTGACTTAT
129 GCCCGCACGCCCATTTCGGGGGTTGACTTAG
* * * *
16189532 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCAGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
16189597 GCACGCAG-GGGGGATAGGGC
66 GCACGCAGAGGGGGATAGGGC
16189617 TTCTTCGATC
Statistics
Matches: 189, Mismatches: 49, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
156 2 0.01
157 48 0.25
158 14 0.07
159 122 0.65
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGAGGGGGATAGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTCAGCGC
CCGCACGCCCATTTCGGGGGTTGACTTAG
Found at i:16190714 original size:159 final size:158
Alignment explanation
Indices: 16190523--16190888 Score: 418
Period size: 158 Copynumber: 2.3 Consensus size: 158
16190513 CCCACACACC
* *
16190523 CGTTTTGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGAGG
1 CGTTTTGTGGGTTGGCTTAGGCATAG-GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGG
** * * * * *
16190587 GTTGTGGTAGCTGGACCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATG
65 GTTGCAGCAGCAGGACCGACAGCACACAGA-GGAGACCGGGCCGATCCCCGACTTACGCATTATG
* *
16190652 CCTCTCC-AGTCGGCTCAGTG-CCCGCACGCT
129 CCTCTCCGA-CCGGCTCAGCGTCCC-CACGCT
* *
16190682 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAG
1 CGTTTTGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAG
* * * * * *
16190745 GGTTGCAGCAGCAGGATCGACAGCACGCAGAGGAGATCGGGCCGGTCCCTGACTTACGCATTCTG
64 GGTTGCAGCAGCAGGACCGACAGCACACAGAGGAGACCGGGCCGATCCCCGACTTACGCATTATG
*
16190810 CCTCTCCGACCGGCTGAGCGTCCCCACGCT
129 CCTCTCCGACCGGCTCAGCGTCCCCACGCT
* ** *
16190840 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCA
1 CGTTTTGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCA
16190889 TACGGAGTTC
Statistics
Matches: 174, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
157 3 0.02
158 88 0.51
159 79 0.45
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGTTTTGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGG
TTGCAGCAGCAGGACCGACAGCACACAGAGGAGACCGGGCCGATCCCCGACTTACGCATTATGCC
TCTCCGACCGGCTCAGCGTCCCCACGCT
Found at i:16190863 original size:158 final size:157
Alignment explanation
Indices: 16190366--16190886 Score: 525
Period size: 159 Copynumber: 3.3 Consensus size: 157
16190356 GCCAGCACTT
** * *
16190366 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ACCTAAGATCGGATCGGACTGAG
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAG
* * * * * ** *
16190430 GGTTACGGTAGCAGGACCAATAGCACGCAG-GGGGATCGGGTCGATCTCGGTTTACGCATTCTAC
65 GGTTGCGGTAGCAGGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCGACTTACGCATTCTGC
* * *
16190494 CTCTCCAGCCGGTTGAGCACCCACACAC
130 CTCTCCAGCCGGCTGAGCGCCCACACGC
* * * **
16190522 CCGTTTTGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGA
1 TCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGA
* * * * * * *
16190585 GGGTTGTGGTAGCTGGACCGGCAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTA
64 GGGTTGCGGTAGCAGGACCGACAGCACGCAGA-GGGGATCGGGCCGAT-CCCGACTTACGCATTC
* * * *
16190650 TGCCTCTCCAGTCGGCTCAGTGCCCGCACGC
127 TGCCTCTCCAGCCGGCTGAGCGCCCACACGC
* *
16190681 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAG
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAG
* * * * *
16190745 GGTTGCAGCAGCAGGATCGACAGCACGCAGAGGAGATCGGGCCGGTCCCTGACTTACGCATTCTG
65 GGTTGCGGTAGCAGGACCGACAGCACGCAGAGGGGATCGGGCCGATCCC-GACTTACGCATTCTG
16190810 CCTCTCC-GACCGGCTGAGCGTCCC-CACGC
129 CCTCTCCAG-CCGGCTGAGCG-CCCACACGC
* * * * *
16190839 TCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAG
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
16190887 CATACGGAGT
Statistics
Matches: 295, Mismatches: 57, Indels: 24
0.78 0.15 0.06
Matches are distributed among these distances:
155 4 0.01
156 70 0.24
157 8 0.03
158 98 0.33
159 111 0.38
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGG
GTTGCGGTAGCAGGACCGACAGCACGCAGAGGGGATCGGGCCGATCCCGACTTACGCATTCTGCC
TCTCCAGCCGGCTGAGCGCCCACACGC
Found at i:16191086 original size:26 final size:25
Alignment explanation
Indices: 16191056--16191107 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16191046 GTTGGCTTAG
*
16191056 GCATAGGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
16191082 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
16191107 G
1 G
16191108 ATCGGACTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:16191247 original size:194 final size:195
Alignment explanation
Indices: 16190754--16191277 Score: 755
Period size: 196 Copynumber: 2.7 Consensus size: 195
16190744 GGGTTGCAGC
* * * *
16190754 AGCAGGATCGACAGCACGCAGAGGAGATCGGGCCGGTCCCTGACTTACGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCAG-GGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGA
* * * *
16190819 CCGGCTGAGCGTCCCCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCT
65 CCGGCTGAGCATCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * **
16190884 AAGCATACGGAGTTCATCCCCAGTTTAAGATCAGACCGGATCGAGAGTTGCTGTAGCATGACCAG
130 AAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGCATCAAGAGTTGCTACAGCATGACCAG
16190949 T
195 T
* * *
16190950 AGCAGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCTCGACTTACGCATTCTGCCTCTCCGA
1 AGCAGGATCGACAGCACGCA-GGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGA
*
16191015 CCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
65 CCGGCTGAGCATCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * *
16191080 AAGCATACGGAGTTCAT-TCCAGTCTAAGATCGGACTGCATCAAGGGTTGCTACAGCATGACCAG
130 AAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGCATCAAGAGTTGCTACAGCATGACCAG
16191144 T
195 T
* * *
16191145 AGCAGGATCGACAGCACGCAGGGGGATTGGGCTGATCCCC-AGCTTTCGCATTCTGCATCTCCGA
1 AGCAGGATCGACAGCACGCAGGGGGATCGGGCTGATCCCCGA-CTTACGCATTCTGCCTCTCCGA
* * * *
16191209 CTGGCTGAGCATCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
65 CCGGCTGAGCATCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
16191274 AAGC
130 AAGC
16191278 CCCAGCCGGA
Statistics
Matches: 294, Mismatches: 32, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
193 1 0.00
194 100 0.34
195 59 0.20
196 133 0.45
197 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (195 bp):
AGCAGGATCGACAGCACGCAGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGAC
CGGCTGAGCATCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGCATCAAGAGTTGCTACAGCATGACCAGT
Found at i:16191859 original size:26 final size:26
Alignment explanation
Indices: 16191830--16191882 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16191820 GTTGGCCTGG
* *
16191830 GCATACGAAGTTTATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAGGTCTAA
* *
16191856 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATTCCAGGTCTAA
16191882 G
1 G
16191883 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAGGTCTAA
Found at i:16192599 original size:26 final size:26
Alignment explanation
Indices: 16192563--16192615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16192553 GTTGACTTAG
16192563 GCATACAGAGTTCATCCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* * *
16192589 GCATATAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
16192615 G
1 G
16192616 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:16192950 original size:159 final size:157
Alignment explanation
Indices: 16192589--16193017 Score: 422
Period size: 159 Copynumber: 2.7 Consensus size: 157
16192579 CACAGTCTAA
* ** * * *
16192589 GCATATAGAGTTCATTCATAGTCTAAGATCAGACTGGATCGAAGGTTGCGGCAGCAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG-TGCAGCAGGA-TGACA
* * ** * *
16192654 GCATGC--AGGGGGATCGAGCCGATCCCTAGCTTACGCATTCTGGCTCTCAAGCCGGCTGAGCAC
64 GCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGGCTCTCAAGCCGGCTCAGCAC
*
16192717 CCGCAAGCCCGTTTCATGGGTTGGCTTAG
129 CCGCAAGCCCGTTTCATGGGTTGACTTAG
** * *** * * *
16192746 GCATAGGGAGTTTATT-CCATGTCTAATCCCTAG-CCGGACCAAGGGTTGTGATAGCAGG-TCCG
1 GCATACAGAGTTCATTCCCA-GTCTAAGATC-AGACTGGACCGAGGGTTGTG-CAGCAGGAT--G
** * *
16192808 GTAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGTG-TCTCCAGTCGGCTCA
61 ACAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATG-GCTCTCAAGCCGGCTCA
* *
16192872 GCACCCGCACGCTCGTTTCATGGGTTGACTTAG
125 GCACCCGCAAGCCCGTTTCATGGGTTGACTTAG
16192905 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTTGCAGCAGGATGACAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG-TGCAGCAGGATGACAG
* * * * * *
16192970 CACGCAG-GGGGGATCGGGTCGGTCCCCGACTTGCGCATTTTGCCTCTC
65 CATGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGGCTCTC
16193018 TGGCCGATTG
Statistics
Matches: 215, Mismatches: 44, Indels: 26
0.75 0.15 0.09
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 80 0.37
158 13 0.06
159 112 0.52
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGCAGCAGGATGACAGC
ATGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGGCTCTCAAGCCGGCTCAGCACCC
GCAAGCCCGTTTCATGGGTTGACTTAG
Found at i:16193267 original size:184 final size:183
Alignment explanation
Indices: 16192905--16193273 Score: 434
Period size: 184 Copynumber: 2.0 Consensus size: 183
16192895 GTTGACTTAG
* * * *
16192905 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTTGCAGCAGGATGACAG
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTCGCAGCAGGATGACAG
* * * * * * * * * *
16192970 CACGCAGGGGGGATCGGGTCGGTCCCCGACTTGCGCATTTTGCCTCTCTGGCCGATTGAGCGTCC
66 CACGCAGGAGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCAGACTGAGCGCCC
*** * * *
16193035 GTTCGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAA
131 ACACGCTCATTTCGTGGGTTGGCTTAGGCAAACAGAGTTCAATCCATGTCTAA
* * *
16193088 GCATACAAAGTTCATTCCTAGTCTAAGATCGGACCGGCCCAAGGGTTG-CGACAGCAGGATCGAC
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTCG-CAGCAGGAT-GAC
* * * * *
16193152 AGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCGGTAGGCTGAGTGC
64 AGCACGCAGGAGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCAGACTGAGCGC
* * *
16193217 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCAAACAGAGTTTATTCCATGTCTAA
129 CCACACGCTCATTTCGTGGGTTGGCTTAGGCAAACAGAGTTCAATCCATGTCTAA
16193272 GC
1 GC
16193274 CCCAACCAGA
Statistics
Matches: 153, Mismatches: 31, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
182 1 0.01
183 51 0.33
184 101 0.66
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTCGCAGCAGGATGACAG
CACGCAGGAGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCAGACTGAGCGCCC
ACACGCTCATTTCGTGGGTTGGCTTAGGCAAACAGAGTTCAATCCATGTCTAA
Found at i:16193452 original size:26 final size:26
Alignment explanation
Indices: 16193416--16193468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16193406 ATTGACTTAG
*
16193416 GCATGCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16193442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16193468 G
1 G
16193469 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16193490 original size:354 final size:353
Alignment explanation
Indices: 16193026--16193666 Score: 849
Period size: 353 Copynumber: 1.8 Consensus size: 353
16193016 TCTGGCCGAT
* * * * * *
16193026 TGAGCGTCCGTTCGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCAATCCATGTCTAAGCA
1 TGAGCGCCCGTACACTCATTTCGTGGATTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGCA
* **
16193091 TACAAAGTTCATTCCTAGTCTAAGATCGGACCGGCCCAAGGGTTGCGACAGCAGGATCGACAGCA
66 TACAAAGTTCATTCCCAGTCTAAGATCAAACCGGCCCAAGGGTTGCGACAGCAGGATCGACAGCA
* * *
16193156 CGCAGGAGGGACCGGGCCGATCCCCGGCTTGC-ATATTCTGCCTCTCCGGT-AGGCTGAGTGCCC
131 AGCAGGA-GGACCGGGCCGATCCCCGGCTTACGA-ATTCTGCCTCTCCGGTCA-GCTGAGCGCCC
* *
16193219 ACACGCTCGTTTCGTGGGTTGGCTTAGGCAAACAGAGTTTATTCCATGTCTAAGCCCCAACCAGA
193 ACACGCCCGTTTCGTGGGTTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCCAACCAGA
16193284 CCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCAGAGTACGTAAAGGGGGATCGGGCTGATCG
258 CCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCAGAGTACGTAAAGGGGGATCGGGCTGATCG
16193349 TCGGCCTACGTATTATACCTTTCCGGCTGAC
323 TCGGCCTACGTATTATACCTTTCCGGCTGAC
*
16193380 TGAGCGCCCGTACACTCATTTCGTGGATTGACTTAGGCATGCGGAGTTC-ATCCCCA-GTCTAAG
1 TGAGCGCCCGTACACTCATTTCGTGGATTGACTTAGGCATACGGAGTTCAAT--CCATGTCTAAG
** * ** * *
16193443 CATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGGTCGAGGGTTGCGACAGTAGGATCGACAG
64 CATACAAAGTTCATTCCCAGTCTAAGATCAAACCGGCCCAAGGGTTGCGACAGCAGGATCGACAG
* * * * *
16193508 CAAGCAGGAGGATCGGGCCGATCCCTGGCTTACGAATTCTGCCTCTCTGGTCAGCTGAGCGCTCG
129 CAAGCAGGAGGACCGGGCCGATCCCCGGCTTACGAATTCTGCCTCTCCGGTCAGCTGAGCGCCCA
* * * ** * * ** *
16193573 TATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGAT
194 CACGCCCGTTTCGTGGGTTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCCAACCAGAC
* * *
16193638 TGAGGGTTGTGGCAGCGGGACTGACAGCA
259 CGAGGGTTGTGGCAGCAGGACCGACAGCA
16193667 CGCAGAGGGG
Statistics
Matches: 243, Mismatches: 40, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
353 126 0.52
354 114 0.47
355 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (353 bp):
TGAGCGCCCGTACACTCATTTCGTGGATTGACTTAGGCATACGGAGTTCAATCCATGTCTAAGCA
TACAAAGTTCATTCCCAGTCTAAGATCAAACCGGCCCAAGGGTTGCGACAGCAGGATCGACAGCA
AGCAGGAGGACCGGGCCGATCCCCGGCTTACGAATTCTGCCTCTCCGGTCAGCTGAGCGCCCACA
CGCCCGTTTCGTGGGTTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCG
AGGGTTGTGGCAGCAGGACCGACAGCAGGATCAGAGTACGTAAAGGGGGATCGGGCTGATCGTCG
GCCTACGTATTATACCTTTCCGGCTGAC
Found at i:16193766 original size:157 final size:159
Alignment explanation
Indices: 16193581--16193941 Score: 417
Period size: 157 Copynumber: 2.3 Consensus size: 159
16193571 CGTATGCCCG
* * * ** *
16193581 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGGATTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGGACCGAGGGC
* * * * *
16193645 TGTGGCAGCGGGACTGACAGCACGCAGAGGGGACCGGGCTGATCCCCAACTTGCGCATTATTCCT
66 TGCGACAGCAGGACCGACAGCACGCAGAGGGGACCGGGCTGATCCCCAACTTGCGCATTATGCCT
* *
16193710 CTTCGACCGGCTTAGCGCCCGCACACTCA
131 CTTCGACCAGCTGAGCGCCCGCACACTCA
* * * * * *
16193739 TTTCGTGAGTTGACTTATGCATA-GGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGATGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACTAGACCGGACCGAGGG
* * * * * *
16193801 CTGCGACAGTAGGACCGATAGCACGTAGGGGGGATCGGGCTGATCCCCAACTTGCGCATTCTGCC
65 CTGCGACAGCAGGACCGACAGCACGCAGAGGGGACCGGGCTGATCCCCAACTTGCGCATTATGCC
* * *
16193866 TCTTCGACCAGCTGAGCGCCCGTACGCTCG
130 TCTTCGACCAGCTGAGCGCCCGCACACTCA
*
16193896 CTTCGTGGGTTGGC-TAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16193942 TACGGAGTTC
Statistics
Matches: 167, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
156 12 0.07
157 131 0.78
158 24 0.14
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGGACCGAGGGC
TGCGACAGCAGGACCGACAGCACGCAGAGGGGACCGGGCTGATCCCCAACTTGCGCATTATGCCT
CTTCGACCAGCTGAGCGCCCGCACACTCA
Found at i:16201424 original size:26 final size:26
Alignment explanation
Indices: 16201372--16201424 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16201362 GTTGGCTTAG
* *
16201372 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
16201398 GCATACAGAGTTCGTTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
16201424 G
1 G
16201425 ATCTGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:16201620 original size:26 final size:26
Alignment explanation
Indices: 16201580--16201632 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16201570 GTTGACTTAC
* *
16201580 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
*
16201606 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
16201632 G
1 G
16201633 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:16201961 original size:26 final size:26
Alignment explanation
Indices: 16201922--16201974 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16201912 GTTGGCTTAG
*
16201922 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
16201948 GCATAGGGATTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
16201974 G
1 G
16201975 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:16202477 original size:26 final size:26
Alignment explanation
Indices: 16202439--16202491 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16202429 GGCTCAAACT
16202439 CTTAGACTGGGAATGAA-TTCCGTATG
1 CTTAGACTGGGAATGAACTT-CGTATG
16202465 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
16202491 C
1 C
16202492 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16203755 original size:159 final size:156
Alignment explanation
Indices: 16203464--16204196 Score: 463
Period size: 159 Copynumber: 4.6 Consensus size: 156
16203454 CTATCGATCT
* *
16203464 TGCTACCGGTCCTGCTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTTCGTA
1 TGCTACCGGTCCTGCT-CCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTA
* * * *
16203529 TGCCTAAGCCAACCCATGAAACGAGCATGCGGATGCTCAACCGACCGAAGAGGCAGAATGCGTAA
65 TGCCTAAGCC-ACCCACGAAACGAGCATGCGGATGCTCAACCGACCGAAAAGGAAGAATGCGCAA
* *
16203594 GCCGAGGATC-AGCTCAGTCCCCCTCTGCA
129 GCCGAGGATCGACCTCA-TCCCCCT-TACA
*
16203623 TGCTACCGGT-CTCGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCT
1 TGCTACCGGTCCT-GCT-CCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGT
* * ** *
16203687 ATGCCTAAGCCACCCACGAAATGGGTGTGCGG-TCGCTCAACCGATCGAAAAGGTAAGAATGCGC
64 ATGCCTAAGCCACCCACGAAACGAGCATGCGGAT-GCTCAACCGACCGAAAAGG-AAGAATGCGC
* * *
16203751 AAGCCGGGGATCGACCTGATCCCCCTTACG
127 AAGCCGAGGATCGACCTCATCCCCCTTACA
* ** * * **
16203781 TGCTACTCGATCCTGCTGTAGCAACACTCGGTCCGGTTTGATCTTAGAC-TAGGAATGAACTCCG
1 TGCTAC-CGGTCCTGCTCCA-CAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCG
* * * ** ** * * * *
16203845 TATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGT
63 TATGCCTAAGCC-ACCCACGAAACGAGCATGCGGATGCTCAACCGACCGAAAAGGAAGAATGCGC
* * * *
16203910 AAGTC-AGGGA-CTAGCC-CGATCCCACC-CACCG
127 AAGCCGA-GGATCGA-CCTC-ATCCC-CCTTA-CA
* ** * * * ** **
16203941 TGCTATCC-ATCCTGCTCTCGTAGCCCTCAGTTCGGTCCGATCTTAGAC-TGGGAATGAACTCCG
1 TGCTA-CCGGTCCTGCTC-CACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCG
* * * *
16204004 TATGCCTAAGCCAACCCATGAAGCGAGC--GCGCGAGTGCTCAGCCGACCGAAGA-GACAGAATG
63 TATGCCTAAGCC-ACCCACGAAACGAGCATGCG-GA-TGCTCAACCGACCGAAAAGGA-AGAATG
** * * * *
16204066 CATAAGTC-AGGGATC-AACTCAGTCCCCCTCTGCG
124 CGCAAGCCGA-GGATCGACCTCA-TCCCCCT-TACA
* * * * * * * *
16204100 TGCTGCCAGTCCTACTGCCACAACTCTTGGT-TGGACTGGGGCTTAGACATGGAATGAACTCCCT
1 TGCTACCGGTCCTGCT-CCACAACCCTCGGTCCGG-TTGGGGCTTAGACATGGAATGAACTCCGT
* *
16204164 ATGCCTAAGCCAACCCACAAAACGAGCGTGCGG
64 ATGCCTAAGCC-ACCCACGAAACGAGCATGCGG
16204197 GCGCTTAGTC
Statistics
Matches: 458, Mismatches: 85, Indels: 61
0.76 0.14 0.10
Matches are distributed among these distances:
157 4 0.01
158 57 0.12
159 343 0.75
160 50 0.11
161 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
TGCTACCGGTCCTGCTCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCACCCACGAAACGAGCATGCGGATGCTCAACCGACCGAAAAGGAAGAATGCGCAAGC
CGAGGATCGACCTCATCCCCCTTACA
Found at i:16205365 original size:158 final size:160
Alignment explanation
Indices: 16205020--16205365 Score: 369
Period size: 160 Copynumber: 2.2 Consensus size: 160
16205010 AACTTTGTAT
* *
16205020 GCTTCGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16205085 CCGACCTAGAGAGGTAGAATGTGCAAGCTGAGGATCGGCATGGTCCCCCTCTGCATGCTGCCGGT
66 CCGACCTAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCACGGTCCCCCTCTGCATACTGCCGAT
***
16205150 CCCACTGCCACAACCCTCGATTCGGTTGGG
131 CCCACTGCCACAACCCTCGATTCGGTTCAA
* * *
16205180 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGTCGCTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
16205244 GCTGGCC-GGAGAGGCAGAATGCGCAAGTTGGGGATTAGCCCGGTCCCCC-CTGCGTACTGTCGA
65 GCCGACCTAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCACGGTCCCCCTCTGCATACTGCCGA
** * *
16205307 TCCTGCTGCCCCAACCCTCTG-TTCGTTTCAA
130 TCCCACTGCCACAACCCTC-GATTCGGTTCAA
* *
16205338 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16205366 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 54 0.35
159 34 0.22
160 62 0.41
161 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCTAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCACGGTCCCCCTCTGCATACTGCCGAT
CCCACTGCCACAACCCTCGATTCGGTTCAA
Found at i:16205375 original size:26 final size:26
Alignment explanation
Indices: 16205339--16205391 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16205329 TCGTTTCAAT
*
16205339 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16205365 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16205391 C
1 C
16205392 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16205949 original size:159 final size:154
Alignment explanation
Indices: 16205574--16206072 Score: 378
Period size: 159 Copynumber: 3.2 Consensus size: 154
16205564 ATCTCCGTAT
* ** * *
16205574 GCTTATACATGGAATGAACTTTGTATGCCTAAGCCAACCCTCGAAACGAGTGTCCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCACTCAG
* * * * * *
16205639 ATTGGCCGGTGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCAACGTGCTGTCGATTCTGC
66 -TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCAACGTGCTGTCGATCCTGC
*
16205704 TACCACAACCCTTGTTCCGATCCGA
130 TACCACAACCCTTGGTCCGATCCGA
* * ** * * * * *
16205729 TCTTAGAC-TAGGAACGAACTCCGTATGCCTAAGTAAACCCATGAAACGTGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCACTCA
* * ** *
16205793 GCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCTGCCTCTGCGTGCTGTCGGT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGG--T--C-CAACGTGCTGTCGAT
* * * ** *
16205858 CCTGCTGCCACAACCCTTGGTCTGGTTGGG
125 CCTGCTACCACAACCCTTGGTCCGATCCGA
* * * *
16205888 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGTGTGCGAGCACTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GTGTCCGGGCACTCA
* * * * * ** *
16205952 GTCGGTTGGAGAAGCAGAATGCGTAAG-CTGGGGTTAG-CCCGGTCCCCCCTGTGTGCTTTCGAT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGGT-CCAAC---GTGCTGTCGAT
* * * * * *
16206015 CTTGCTACCGCAACCCTCGGCCCGGTCTGA
125 CCTGCTACCACAACCCTTGGTCCGATCCGA
*
16206045 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16206073 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
154 38 0.14
155 51 0.19
156 3 0.01
157 54 0.20
158 7 0.03
159 112 0.42
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCCGGGCACTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCAACGTGCTGTCGATCCTGCT
ACCACAACCCTTGGTCCGATCCGA
Found at i:16206098 original size:26 final size:26
Alignment explanation
Indices: 16206046--16206098 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16206036 CCGGTCTGAT
*
16206046 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
* * *
16206072 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
16206098 C
1 C
16206099 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:16207007 original size:26 final size:26
Alignment explanation
Indices: 16206978--16207028 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16206968 CCGATTCGAT
16206978 CTTAGAC-TGGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
*
16207004 CTTAGACATGGAATGAACTTCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
16207029 GCCTAAGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:16207432 original size:159 final size:158
Alignment explanation
Indices: 16207004--16207434 Score: 458
Period size: 159 Copynumber: 2.7 Consensus size: 158
16206994 ACTCCGTATC
* * *
16207004 CTTAGACATGGAATGAACTTCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
16207069 TGGCTGGAGAGGTAGAATGCGCAAG-CTGGGGATCGATCTGGTCCCCC-CTGCATGCTGTCGATC
66 CGGC-GGAGAGGTAGAATGCGCAAGTC-GGGGATCGATCCGGTCCCCCTCTGCATGCTGTCGATC
* * * *
16207132 CTGCTGCTGCAAACCCTCGATCCGGTTTGAT
129 CCGCTGC-GCAAACCCTCGATCCGGCTGGAG
* * * * * * *
16207163 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCGTTCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** * *
16207227 CCAGCCGGAGAGGCATAATGCGAAAGTCGGGGATCGATACGATCCCCCTCTGTGTGCTTTTGATC
65 CC-GGCGGAGAGGTAGAATGCGCAAGTCGGGGATCGATCCGGTCCCCCTCTGCATGCTGTCGATC
*
16207292 CCGCTGC-CACAACCCTCTG-TCCGGCTGGGG
129 CCGCTGCGCA-AACCCTC-GATCCGGCTGGAG
* * * *
16207322 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGTCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
**
16207387 CGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCT
66 CGG-CGGAGAGGTAGAATGCGCAAGTCGGGGATCGATCCGGTCCCCCT
16207435 ACGTGCTACC
Statistics
Matches: 219, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 4 0.02
159 192 0.88
160 23 0.11
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCGGAGAGGTAGAATGCGCAAGTCGGGGATCGATCCGGTCCCCCTCTGCATGCTGTCGATCCC
GCTGCGCAAACCCTCGATCCGGCTGGAG
Found at i:16207894 original size:26 final size:26
Alignment explanation
Indices: 16207865--16207917 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16207855 CCGATCCGAT
16207865 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16207891 CTTAGACATGGAATGTACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16207917 C
1 C
16207918 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16208302 original size:26 final size:26
Alignment explanation
Indices: 16208273--16208325 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16208263 CCGATCCGAT
16208273 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16208299 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16208325 C
1 C
16208326 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16211017 original size:26 final size:26
Alignment explanation
Indices: 16210988--16211040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16210978 TCGGTCCGAT
16210988 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16211014 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16211040 C
1 C
16211041 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16212909 original size:26 final size:26
Alignment explanation
Indices: 16212873--16212925 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16212863 CCGGTCCAAT
* *
16212873 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16212899 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16212925 C
1 C
16212926 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16213520 original size:11 final size:11
Alignment explanation
Indices: 16213504--16213528 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16213494 CGGTTAGGCT
16213504 CTCCGACGATG
1 CTCCGACGATG
16213515 CTCCGACGATG
1 CTCCGACGATG
16213526 CTC
1 CTC
16213529 TAGCGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16214339 original size:26 final size:26
Alignment explanation
Indices: 16214301--16214353 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214291 CCGGTCCGAT
16214301 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16214327 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16214353 C
1 C
16214354 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16214748 original size:159 final size:158
Alignment explanation
Indices: 16214326--16214788 Score: 346
Period size: 159 Copynumber: 2.9 Consensus size: 158
16214316 AACTCCATAT
* * * * ** *
16214326 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGATTGTGCGGGCGCTTA
1 GCTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *** * **
16214390 GCCGATC-GAAAAGGTAGAATGCGCAAGCGGGGGATCAGCCCGG-TCCCCCCTGCGTGCTGTTGA
65 ACCAACCAG-AGAGGCAGAATGCACAAGCCAAGGATCAGCCCGGAT-CCCCCTTCGTGCTGCCGA
* * *** ***
16214453 TCCTGCTACTACAACCCTCAAACCGG-TCCAA
128 TCCTGCTACCACAACCCTCGATTTGGCT-GGG
* * * * * * * *
16214484 TCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGTTGAG
1 GCTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
16214549 CCAACCGGAGAGGCATAATGCACAAGCCAAGGATCAGCCC-GATCCCCCTCTATGTGCTGCC-AG
66 CCAACCAGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGGATCCCCCT-T-CGTGCTGCCGA-
* *
16214612 TCTTGCTGCCACAACCCTCGATTTGGCTGGG
128 TCCTGCTACCACAACCCTCGATTTGGCTGGG
* * *
16214643 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * ** ** *
16214707 ACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTTCCCCCTTCGTGCTGCCGATC
65 ACCAACCAGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGGATCCCCCTTCGTGCTGCCGATC
16214772 CTGCTACCACAACCCTC
130 CTGCTACCACAACCCTC
16214789 AGTCCGGTTT
Statistics
Matches: 239, Mismatches: 56, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 8 0.03
158 110 0.46
159 111 0.46
160 10 0.04
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAACCAGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGGATCCCCCTTCGTGCTGCCGATCC
TGCTACCACAACCCTCGATTTGGCTGGG
Found at i:16214843 original size:26 final size:26
Alignment explanation
Indices: 16214802--16214854 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214792 CCGGTTTGAT
*
16214802 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16214828 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16214854 C
1 C
16214855 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16219658 original size:26 final size:26
Alignment explanation
Indices: 16219621--16219670 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16219611 TCAAAATCAC
16219621 AGACTGGAAATGAACTCTGTATGCTT
1 AGACTGGAAATGAACTCTGTATGCTT
16219647 AGACATGG-AATGAACTCTGTATGC
1 AGAC-TGGAAATGAACTCTGTATGC
16219671 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (26 bp):
AGACTGGAAATGAACTCTGTATGCTT
Found at i:16219997 original size:159 final size:157
Alignment explanation
Indices: 16219643--16220137 Score: 475
Period size: 159 Copynumber: 3.1 Consensus size: 157
16219633 AACTCTGTAT
* * * *
16219643 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGATCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCT-TATGGCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCA
* * * * * * *
16219707 GCTGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCAGCCC-AGTCCCCTTATG--TGCTGTCGA
65 GCCG-GCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGA-TCCCC-TCTGCATGCTATCGA
* *
16219769 TCCTACTACCGCAACCCTCGGTCCGATCCGA
127 TCCCACTACCACAACCCTCGGTCCGATCCGA
* * * * * *
16219800 TCTTAGAC-TAGGAATGAACTCCGTAT-GCGTAAGTCAACCCATGAAACAAGCATGCAGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCTTATGGC-TAAGCCAACCCATGAAACAAGCGTGCGGGTGCTC
* *
16219863 AGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCACTCTGCATGCTATCGA
64 AGCCGG-CGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCC-CTCTGCATGCTATCGA
* * *
16219928 TCCCACTGCCACAACCCTCGGTCCGA-CTGGG
127 TCCCACTACCACAACCCTCGGTCCGATC-CGA
* * * *
16219959 GCTTAGACATGGAATGAACTCCTTATGGCTAAGCCAACCAATGAAACAGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGGCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
* * * * * *
16220024 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGCTCAGCCCGATCCCCCCTGCATGCTGTCAATCC
66 CCGGCGA-AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCATGCTATCGATCC
* * ** *
16220089 TACTATCGTAACCCTCGGTCCGAGCCGA
130 CACTACCACAACCCTCGGTCCGATCCGA
*
16220117 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
16220138 TGTATGCTTA
Statistics
Matches: 274, Mismatches: 50, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
156 2 0.01
157 89 0.32
158 59 0.22
159 121 0.44
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTTATGGCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
CCGGCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCATGCTATCGATCCC
ACTACCACAACCCTCGGTCCGATCCGA
Found at i:16220154 original size:26 final size:26
Alignment explanation
Indices: 16220118--16220170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16220108 CCGAGCCGAT
*
16220118 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16220144 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16220170 C
1 C
16220171 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16220500 original size:170 final size:171
Alignment explanation
Indices: 16220143--16220510 Score: 431
Period size: 171 Copynumber: 2.2 Consensus size: 171
16220133 AACTCTGTAT
* * * *
16220143 GCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTCCGGGCACTCAG
* * * * *
16220208 TCGGTCAGAGAGGCATAATGCACAAGCTGAGGATCAGCCCGGTCCCTCTCTGCATGCTGTCGATC
66 CCGGCCAGAGAGGCAGAATGCACAAGCTGAGGATCAGCCCGGTCCCTCCCTGCATACTGTCGATC
* *
16220273 CCGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
131 CCGCTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGA
*
16220314 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAATGAGCGTCCGGGCACTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTCCGGGCACTC
* * * * * *
16220377 AGCCGGCCGGAGAGGCAGAATGCGCAAGAC-GGGGATCGGCCTGGTCCC-CCCTGCATACTGTTG
64 AGCCGGCCAGAGAGGCAGAATGCACAAG-CTGAGGATCAGCCCGGTCCCTCCCTGCATACTGTCG
* * * * ** *
16220440 ATCCTGTTGCTGGTCCTGCTACCGTAACCCTCGGTCTGGTCT-GA
128 ATCCCGCTACCGGTCCTGCTACCACAACCCTCGGTCCGG-CTGGA
*
16220484 TCTTAGACTGGGAATGAACTCCGTATG
1 GCTTAGACTGGGAATGAACTCCGTATG
16220511 TCTAGACATG
Statistics
Matches: 166, Mismatches: 26, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
169 1 0.01
170 68 0.41
171 94 0.57
172 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTCCGGGCACTCAG
CCGGCCAGAGAGGCAGAATGCACAAGCTGAGGATCAGCCCGGTCCCTCCCTGCATACTGTCGATC
CCGCTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGA
Found at i:16221131 original size:159 final size:158
Alignment explanation
Indices: 16220679--16221223 Score: 512
Period size: 159 Copynumber: 3.4 Consensus size: 158
16220669 CCCAGGAAAC
* ** * * *
16220679 GAGCCAGCCGAAGAGGCATAATGCGCAAGTTGGGGATCAGCCTGGTCCCCCTCTACGTGCGGTCG
1 GAGCCAGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCG
* * * * * *
16220744 GTCCCGCTGCCACAACCCTCAGTCTGGCTAGGACTTAGACATGCAATGAACTCCCTATGCCTAAG
66 ATCCCTCTGCCAGAACCCTCGGT-TGGCTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAG
* * *
16220809 CCAACCCATGAAACGGGTGTGCGGGCGCT
130 CCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * *
16220838 CAGCC-GACCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTTGGTCCCCC-CTGCGTGCTATC
1 GAGCCAG-CCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTC
* * * ** * * *
16220901 GAT-CCTGCTG-CTGCAACCCTCGATTCAG-TCCGATCTTAGACTTGGAATGAACTCCGTTTGCA
65 GATCCCT-CTGCCAG-AACCCTCGGTT-GGCTAGGA-CTTAGACATGGAATGAACTCCGTATGCC
* * *
16220963 TAAGTCAACCCACGAAATGAGCGTGTGGGCGCT
126 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* * *
16220996 GAGCCAGCCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCG
1 GAGCCAGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCG
* *
16221061 ATCCCTCTGCCAGAACCCTCGGTATGGCTAGGGCTTAAACATGGAATGAACTCCGTATGCCTAAG
66 ATCCCTCTGCCAGAACCCTCGGT-TGGCTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAG
16221126 CCAACCCACGAAAC-AGGCGTGCGGGCGCT
130 CCAACCCACGAAACGA-GCGTGCGGGCGCT
* * * * ** * * * * *
16221155 TAGTCGGCCAGAA-AGGCAGAATGCACAAGCTGGGGATCAGCCCGGTACACCC-CTGCGTGCTAT
1 GAGCCAGCC-GAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGT-CCCCCTCTGCGTGCTGT
16221218 CGATCC
64 CGATCC
16221224 TACTGTCGCA
Statistics
Matches: 306, Mismatches: 66, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.02
158 116 0.38
159 168 0.55
160 15 0.05
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GAGCCAGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCG
ATCCCTCTGCCAGAACCCTCGGTTGGCTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCT
Found at i:16221303 original size:26 final size:26
Alignment explanation
Indices: 16221253--16221305 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16221243 CTGGTTTGAT
*
16221253 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
16221279 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
16221305 C
1 C
16221306 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:16221574 original size:196 final size:196
Alignment explanation
Indices: 16221235--16221602 Score: 515
Period size: 196 Copynumber: 1.9 Consensus size: 196
16221225 ACTGTCGCAA
* * *
16221235 CCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTATGTATGCTTAGACATGGAATGAACTCC
1 CCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTACGTATGCTTAGACATGGAATGAACTCC
* * * *
16221300 GTATGCCTAAGCCAACCCATGAAACGAGGGTGCAGGCACTCAACCGGCCAGAGAGGTAGAACGCG
66 ATATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGAACGCG
*
16221365 CAAGCCGGGGATCGA-CCTGATCCCCCCTGCATGCTGTCGATCTTGCTGCTGGTCCTGCTGCCAT
131 CAAGCCGGGGATCGACCCAG-TCCCCCCTGCATGCTGTCGATCTTGCTGCTGGTCCTGCTGCCAT
16221429 AG
195 AG
* * * * *
16221431 CCCTGGGTCTGGTCTGGTTTTATACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCC
1 CCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTACGTATGCTTAGACATGGAATGAACTCC
* * * *
16221496 ATATGCCTAAGCCAACCCAGGAAACGAGCGTGC-GCGCACTCAGCCGGTCGGAGAGGCAGAATGC
66 ATATGCCTAAGCCAACCCAGGAAACGAGCGTGCAG-GCACTCAACCGGCCAGAGAGGCAGAACGC
* * * *
16221560 TCAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATC
130 GCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATC
16221603 CTACTATCGA
Statistics
Matches: 149, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
195 1 0.01
196 145 0.97
197 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
CCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTACGTATGCTTAGACATGGAATGAACTCC
ATATGCCTAAGCCAACCCAGGAAACGAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGAACGCG
CAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCTTGCTGCTGGTCCTGCTGCCATA
G
Found at i:16221987 original size:26 final size:26
Alignment explanation
Indices: 16221951--16222006 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16221941 CTGGTTCGAT
*
16221951 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16221977 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16222003 CTTA
1 CTTA
16222007 AGTCCACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16222496 original size:686 final size:681
Alignment explanation
Indices: 16220744--16222893 Score: 2374
Period size: 686 Copynumber: 3.1 Consensus size: 681
16220734 CGTGCGGTCG
* * ** * *
16220744 GTCCCGCTGCCACAACCCTCAG-TCTGGCTAGGACTTAGACATGCAATGAACTCCCTATGCCTAA
1 GTCCTGCTGCCACAACCCTCGGTTCAAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
** * * *
16220808 GCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGG
66 GCCAACCCATGAAACGGACGTGCGGCCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGGGG
* * *
16220873 ATTGGCTTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATTC-AGTCCGATCT
131 ATCGGCTTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCGA-TCTGATCT
* * * *
16220937 TAGACTTGGAATGAACTCCGTTTGCATAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAGCCA
195 TAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAGCC-
* *
16221002 GCCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCCT
259 GACGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGT-CCT
* * *
16221067 CTGCCAGAACCCTCGGTATGGCTAGGGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACC
323 CTGCCACAACCCTCGGT-TGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * ** * *
16221132 CACGAAACAGGCGTGCGGGCGCTTAGTCGGCCAGAAAGGCAGAATGCACAAGCTGGGGATCAGCC
387 CACGAAACAGGCGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
** * * * *
16221197 CGGTACACCCCTGCGTGCT-ATCGATCCTACTGTCGCAACCCTCGGTCTGGTTTGATCTTAGACT
452 TAGT-C-CCCCTGCGTACTGCT-GATCCTACTGTCGCAACCCTCGGTCTGGTTCGATCTTAGGCT
** *
16221261 GGGAATGAACTATGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCAACCCATGAAA
514 GGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCC-ACCCATGAAA
* * * * * * *
16221324 ----CG-A-GGGTG--CAGGCACTC-A--A--CCGGCCAGAGAGGTAGAACGCGCAAGCCGGGGA
577 TGTGCGTATGGGCGCTCAGCCAC-CGATGAGGCCGGCCAGAGAGGCATAATGCGTAAGCCGGTGA
* * * * * *
16221376 TCGACCT-GATCCCCC-CTGCATGCTGTCGATCTTGCTG-CT
641 TC-AGCTCGGTCCCCCTCTGCATGCTGCCAATCTCGTTGCCT
* * * *
16221415 GGTCCTGCTGCCATAGCCCTGGGTCTGGTCTGGTTTTATACTGAGAATGAACTCCGTATGCTTAG
1 -GTCCTGCTGCCACA-ACC-----C---TC-GG---T-T-C----AA-G--CT-AG--GGCTTAG
* * * *
16221480 ACATGGAATGAACTCCATATGCCTAAGCCAACCCAGGAAAC-GAGCGTGC-GCGCACTCAGCCGG
40 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGC-CGCTCAGCCGA
* * *** * *
16221543 TCGGAGAGGCAGAATGCT-CAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTAC
103 CCGGAGAGGCAGAATG-TGCAAGCCGGGGATCGGCTTGGTCCCCCCTGCGTGCTATCGATCCTGC
* * * * * ** * *
16221607 T-ATCGAAACCCTCGATCTGGTCTGAATTTTAGACTAGGAATGAACTTTGTGTGCCTAAGTCAAC
167 TGCT-GCAACCCTCGATCCGATCTG-ATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAAC
* * * ** *
16221671 CCATGAAACGAGCGTGTGGGCGTTGAGTCGACGGGAGAGGCATAATGCACAAGCCGGGGATCGGC
230 CCATGAAACGAGCGTGTGGGCGCTGAGCCGAC-GAAGAGGCATAATGCGTAAGCCAGGGATCGGC
* * * * *
16221736 CTGGTCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACA
294 CCGATCCCCCTCTGCGTGCTGTCGGT-CCTCTGCCACAACCCTCGGTT-GGCTAGGGCTTAGACA
* * * *
16221801 TGCAATGAACTCCTTATGCCTATGCCAACCCACGAAACTGGCGTGCGGGTGCTCAGCCGACCAGA
357 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGCCGACCAGA
16221866 GAGGCAGAATGCGTAAGCCGGGGATCGGCCTAGTCCCTCCTGCGTACTGCTGATCCTACTGTCGC
422 GAGGCAGAATGCGTAAGCCGGGGATCGGCCTAGTCCC-CCTGCGTACTGCTGATCCTACTGTCGC
*
16221931 AAACCTCGGTCTGGTTCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
486 AACCCTCGGTCTGGTTCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* *
16221996 CCGTATGCTTAAGTCCACCCATGAAATGTGCGTATCGGGCGCTCAGTCGACCGATGAGGCCGGCC
551 CCGTATGCCTAAGTCCACCCATGAAATGTGCGTAT-GGGCGCTCAG-CCACCGATGAGGCCGGCC
*
16222061 AGAGAGGCATAATGCATAAGCCGGTGATCAGCTCGGTCCCCCTCTGCATGCTGCCAATCTCGTTG
614 AGAGAGGCATAATGCGTAAGCCGGTGATCAGCTCGGTCCCCCTCTGCATGCTGCCAATCTCGTTG
16222126 CCT
679 CCT
*
16222129 GTCCTGCTGCCACAACCCTCGGTTC-AGCTAGGGCTTAGAGATGGAATGAACTCCCTATGCCTAA
1 GTCCTGCTGCCACAACCCTCGGTTCAAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * ** *
16222193 GCCAACCCACGAAACGGACGTGCGGCCGCTCAGCCAACCGGAGAGCCAGAATGTGCAAGCCAAGA
66 GCCAACCCATGAAACGGACGTGCGGCCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGGGG
* * * *
16222258 ATCGACTTGGTCCCCCCTGCGTGCTTTTGATCCTGCTGCTGCAACCCTCGGTCCGATCTGATCTT
131 ATCGGCTTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCGATCTGATCTT
* * * **
16222323 AGACTGGGAATGAACTCCCTATGCATAAGTCAACCAATGAAACGAGCGTACGGGCGCTGAGCCGG
196 AGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAGCC-G
* * * * * *
16222388 TCGAAGAGGCATAATGCGTAATCTAGGGATCGACCCGATCCCTCTCTACGTGCTGTCGGTCCTAC
260 ACGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCT-C
* * *
16222453 TGCCACAACCCTCGGTCTAGCTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
324 TGCCACAACCCTCGGT-TGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * *
16222518 ATGAAACAGACGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCT
388 ACGAAACAGGCGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCT
*
16222583 AGTCCCCCCTGCGTACTGCTGATCCTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAGGCTGGG
453 AGT-CCCCCTGCGTACTGCTGATCCTACTGTCGCAACCCTCGGTCTGGTTCGATCTTAGGCTGGG
*
16222648 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCCACCCATGAAATGTGC
517 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCCACCCATGAAATGTGC
* * * * **
16222713 GTGTGGGCACTCAGCCAACCGGTGAGGCCAGCCAGAGAGGCATAATGCGTAAGCTAGTGATCAGC
582 GTATGGGCGCTCAGCC-ACCGATGAGGCCGGCCAGAGAGGCATAATGCGTAAGCCGGTGATCAGC
*
16222778 TCGGTCCCTCTCTGCATGCTGCCAATCTCGTTGCCT
646 TCGGTCCCCCTCTGCATGCTGCCAATCTCGTTGCCT
* * * ***
16222814 GTCCTGCTGCCACAACCCTTGGTTC-GGCTAGGGCTTAGAGATGGAATGAACTTTGTATGCCTAA
1 GTCCTGCTGCCACAACCCTCGGTTCAAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
16222878 GCCAACCCATGAAACG
66 GCCAACCCATGAAACG
16222894 AGTGTGCAGG
Statistics
Matches: 1234, Mismatches: 179, Indels: 117
0.81 0.12 0.08
Matches are distributed among these distances:
672 12 0.01
673 2 0.00
678 1 0.00
681 2 0.00
682 1 0.00
684 1 0.00
685 163 0.13
686 346 0.28
687 130 0.11
688 6 0.00
689 1 0.00
690 2 0.00
692 1 0.00
693 2 0.00
695 2 0.00
696 1 0.00
697 6 0.00
698 231 0.19
699 229 0.19
700 1 0.00
702 2 0.00
703 3 0.00
704 2 0.00
705 4 0.00
707 5 0.00
708 3 0.00
710 1 0.00
711 3 0.00
712 38 0.03
713 31 0.03
714 2 0.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (681 bp):
GTCCTGCTGCCACAACCCTCGGTTCAAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCATGAAACGGACGTGCGGCCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGGGG
ATCGGCTTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCGATCTGATCTT
AGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAGCCGA
CGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTCTG
CCACAACCCTCGGTTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACAGGCGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTAGT
CCCCCTGCGTACTGCTGATCCTACTGTCGCAACCCTCGGTCTGGTTCGATCTTAGGCTGGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCCACCCATGAAATGTGCGTAT
GGGCGCTCAGCCACCGATGAGGCCGGCCAGAGAGGCATAATGCGTAAGCCGGTGATCAGCTCGGT
CCCCCTCTGCATGCTGCCAATCTCGTTGCCT
Done.