Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 134 of 402
Found at i:16222576 original size:159 final size:155
Alignment explanation
Indices: 16222129--16222628 Score: 443
Period size: 158 Copynumber: 3.2 Consensus size: 155
16222119 CTCGTTGCCT
*
16222129 GTCCTGCTGCCACAACCCTCGGT-TCAGCTAGGGCTTAGAGATGGAATGAACTCCCTATGCCTAA
1 GTCCTGCTGCCACAACCCTCGGTCT-AGCT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * * * * *
16222193 GCCAACCCACGAAACGGACGTGCGGCCGCTCAGCCAACCGGAGAGCCAGAATGTGCAAGCCAAGA
64 GCCAACCCATGAAAC-GACGTGCGGGCGCTCAGCCGACC-GAGAGGCAGAATGCGTAAGTCAGGG
** * * * *
16222258 ATCGACTTGGTCCCCCCTGCGTGCTTTTG
127 ATCGACCCGATCCCCCCTACGTGCTGTCG
* ** * * ** *
16222287 ATCCTGCTGCTGCAACCCTCGGTCCGATCTGATCTTAGAC-TGGGAATGAACTCCCTATGCATAA
1 GTCCTGCTGCCACAACCCTCGGT-CTAGCTGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
* * * * ** *
16222351 GTCAACCAATGAAACGAGCGTACGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGTAA-TCTAGG
64 GCCAACCCATGAAACGA-CGTGCGGGCGCTCAGCCGACCG-AGAGGCAGAATGCGTAAGTC-AGG
*
16222415 GATCGACCCGATCCCTCTCTACGTGCTGTCG
126 GATCGACCCGATCCC-CCCTACGTGCTGTCG
* *
16222446 GTCCTACTGCCACAACCCTCGGTCTAGCTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCTAGCT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* *
16222511 CCAACCCATGAAACAGACGTGCGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCGGGGA
65 CCAACCCATGAAAC-GACGTGCGGGCGCTCAGCCGACC-GAGAGGCAGAATGCGTAAGTCAGGGA
* * * *
16222576 TCG-GCCTAGTCCCCCCTGCGTACTG-CTG
128 TCGACCCGA-TCCCCCCTACGTGCTGTC-G
* * *
16222604 ATCCTGCTGTCGCAACCCTCGGTCT
1 GTCCTGCTGCCACAACCCTCGGTCT
16222629 GGTTCGATCT
Statistics
Matches: 268, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 117 0.44
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (155 bp):
GTCCTGCTGCCACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAACGACGTGCGGGCGCTCAGCCGACCGAGAGGCAGAATGCGTAAGTCAGGGATCG
ACCCGATCCCCCCTACGTGCTGTCG
Found at i:16222673 original size:26 final size:26
Alignment explanation
Indices: 16222637--16222689 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16222627 CTGGTTCGAT
*
16222637 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16222663 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16222689 C
1 C
16222690 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16223046 original size:26 final size:26
Alignment explanation
Indices: 16223017--16223072 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16223007 CTGGTCTGAT
*
16223017 CTTAGAC-TGGGAATGAACTCTGTATA
1 CTTAGACAT-GGAATGAACTCCGTATA
*
16223043 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATA
16223069 CTTA
1 CTTA
16223073 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:16223238 original size:26 final size:26
Alignment explanation
Indices: 16223202--16223254 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16223192 CCGGTCCAAT
* *
16223202 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16223228 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16223254 C
1 C
16223255 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16223918 original size:26 final size:26
Alignment explanation
Indices: 16223881--16223931 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16223871 GCTCAAAATC
16223881 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
16223907 TTAGACAT-GGAATGAAGTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
16223932 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:16224254 original size:159 final size:157
Alignment explanation
Indices: 16223907--16224407 Score: 542
Period size: 158 Copynumber: 3.2 Consensus size: 157
16223897 CTCCATATGT
* * *
16223907 TTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * * *
16223972 GGCCGGAGAGGTAGAATGCGCAAGCTGGGGATCAACCCAGTCCCCCCTACGTGCTGTCGATCTTG
66 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTA
* *
16224037 CTGCCACAACCCTCGGTCCGATCTGATC
131 CTGCCACAACCCTCGGTCC-AGCTGAGC
* * * * * *
16224065 TTAGAC-TGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
16224129 CGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTGCGTGCTGCCGATCC
65 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCC-CTGCGTGCTGTCGATCC
* *
16224194 CACTGCCACAACCCTCGGTCCAGCTGGGGC
129 TACTGCCACAACCCTCGGTCCAGCT-GAGC
* ** * * *
16224224 TTAGACATGGAATGAACTCCCTATGCCTAAGGGAACCCACAAAATGGGCATGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
16224289 AGCC-AGAGAGGCAGAATGCACAAGCCAGGGG-TCGGCCCGGTCCCCCCTGCTTGCTGTCGATCC
66 GGCCGA-AGAGGCAGAATGCGCAAGCC-GGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
* * * *
16224352 TACTGTCGCAACCCTCGGTCCAGTCCGATC
129 TACTGCCACAACCCTCGGTCCAG-CTGAGC
* *
16224382 TTAGAC-TGGGAATTAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCATATGC
16224408 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 50, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 157 0.55
159 121 0.42
160 5 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCAGCTGAGC
Found at i:16224410 original size:26 final size:26
Alignment explanation
Indices: 16224381--16224433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16224371 CCAGTCCGAT
*
16224381 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16224407 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16224433 C
1 C
16224434 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16224706 original size:355 final size:343
Alignment explanation
Indices: 16224064--16224805 Score: 900
Period size: 355 Copynumber: 2.1 Consensus size: 343
16224054 CCGATCTGAT
* * * * *
16224064 CTTAGACTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACAGGTGCTCAGC
* *
16224129 CGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTGCGTGCTGCCGATCC
66 CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCAATCCCCCTCTGCGTGCTGCCGATCC
* **
16224194 CACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGGAA
131 CACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
16224259 CCCACAAAATGGGCATGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCAGGGGTCGG
196 CCCACAAAATGAGCATGCGGGCGCTCAGCCAGCCAGAAAGGCAGAATGCACAAGCCAGGGGTCGA
* * * *
16224324 CCCGGTCCCCCCTGCTTGCTGTCGATCCTACTG-TCGCAACCCTCGGTCC-AGTCCGATCTTAGA
261 CCCGATCCCCCCTGCGTGCTATCGATCCTACTGCT-GCAACCCTCGATCCGA-TCCGATCTTAGA
*
16224387 CTGGGAATTAACTCCGTATG
324 CTGGGAATGAACTCCGTATG
* * *
16224407 CTTAGACTGGGGATGAGCTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACAGGTGCTCAGC
* * ** * *
16224472 CAGCCGGAGAGGCATAATGCGTAAGCCGAGGATC-AGCCCGGTCCCCTTCTGCGTGCTGTCGATC
66 CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGA-CCCAATCCCCCTCTGCGTGCTGCCGAT-
* ** * *
16224536 CCGCTGCCAGTCCTGCTGCCACAAGCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTTCGT
129 ---C--CCA------CTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCT
* ** * * * *** *
16224601 ATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCAGTCGGTTGGAAAGGCAGAATGCGCA
183 ATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAGCCAGCCAGAAAGGCAGAATGCACA
*
16224666 AGCC-GGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCGA
248 AGCCAGGGG-TCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCTGCAACCCTCGATCCGA
*
16224730 TCTGATCTTAGACTGGGAATGAACTCCGTATG
312 TCCGATCTTAGACTGGGAATGAACTCCGTATG
*
16224762 CTTAGACT-GGGATGAACTCCCTATGCCTAAGTCAACCCACGAAA
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAA
16224806 TGAGCGTGCG
Statistics
Matches: 336, Mismatches: 47, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
342 1 0.00
343 110 0.33
347 1 0.00
349 3 0.01
354 37 0.11
355 182 0.54
356 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTACAGGTGCTCAGC
CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCAATCCCCCTCTGCGTGCTGCCGATCC
CACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAATGAGCATGCGGGCGCTCAGCCAGCCAGAAAGGCAGAATGCACAAGCCAGGGGTCGA
CCCGATCCCCCCTGCGTGCTATCGATCCTACTGCTGCAACCCTCGATCCGATCCGATCTTAGACT
GGGAATGAACTCCGTATG
Found at i:16224786 original size:25 final size:26
Alignment explanation
Indices: 16224736--16224787 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16224726 CCGATCTGAT
*
16224736 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
16224762 CTTAGACTGGG-ATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
16224787 C
1 C
16224788 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:16226475 original size:158 final size:155
Alignment explanation
Indices: 16226098--16226862 Score: 443
Period size: 157 Copynumber: 4.8 Consensus size: 155
16226088 CCTAGTATCG
* * *
16226098 GTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 GTCCTGCTGCCACAACCCTCGTCCTGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * *
16226163 CAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCTGGGGAT
66 CAACCCACGAAACGAGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGAT
* *
16226228 CAACCCGATCCCCCTGCGTGCTGTC
131 CAACCCAATCCCCCTGCGTGCTGCC
* ** * * ** **
16226253 GATCCTGCTACTGCAACCCTCGGT-CTGGTTCGATCTTAG-TTTGGGAATGAACTCCGC-ATGCC
1 G-TCCTGCTGCCACAACCCTC-GTCCT-GCTAGGGCTTAGACAT-GGAATGAACTCC-CTATGCC
* * * * * *
16226315 TAAGTCAACCCACGAAACGAGCATGCGGGTGCTGAGCCGGTCGGGGAGGCATAATGC-CAAGCCG
61 TAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCG
*
16226379 GGGATCAGCCCAATCCCCCTCTGCGTGCTGCC
126 GGGATCAACCCAAT-CCCC-CTGCGTGCTGCC
* * *
16226411 AGTCCCGCTGCCACAACCCTCGATCCTGCTAGGGCTTAGAGATGAAATGAACTCCCTATGCCTAA
1 -GTCCTGCTGCCACAACCCTCG-TCCTGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * * * * * *
16226476 GCCAACCCATG-AATGGGCGTGCGAGCACTCAGCCGATCGGAGAGGTAGAATGCACAAGCTGGGG
64 GCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGG
* *** * * *
16226540 ATCGACTCGTTCCCCCCCCCCCCGCGTACTGTC
129 ATC-A-----ACCCAATCCCCCTGCGTGCTGCC
* ** ** *
16226573 GATCCTACTATCA-AACCCTCGGT-CTGATCT-GATCTTAGAC-TGGGAATGAACTCCATATGCC
1 G-TCCTGCTGCCACAACCCTC-GTCCTG--CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCC
* * * * ** * * * * * * *
16226634 TAAGTCAACCGATGAAATC-AGCGTGTGGGTGCTGAGCTGATCGGAGAGGCATAATGCGCAAGCT
61 TAAGCCAACCCACGAAA-CGAGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCC
* * ** * ** * * *
16226698 GGAGACCGGCACGGTCCCCTTTTGCATGTTGCC
125 GGGGATCAACCCAATCCCC--CTGCGTGCTGCC
* ** * * * * * *
16226731 AATCCCACTACCACAACCCTGGGTCCGGCTGGGGCTTAGACATAGAATGAACTCCTTATGCCTAA
1 -GTCCTGCTGCCACAACCCT-CGTCCTGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * *
16226796 GCCAACCCATGAAATGGGCATGCTGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGGGG
64 GCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGG
16226861 AT
129 AT
16226863 TAGCTCGGTC
Statistics
Matches: 458, Mismatches: 117, Indels: 66
0.71 0.18 0.10
Matches are distributed among these distances:
155 1 0.00
156 42 0.09
157 113 0.25
158 92 0.20
159 90 0.20
160 7 0.02
161 45 0.10
162 61 0.13
163 4 0.01
164 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
GTCCTGCTGCCACAACCCTCGTCCTGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACGAGCATACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGAT
CAACCCAATCCCCCTGCGTGCTGCC
Found at i:16226952 original size:26 final size:26
Alignment explanation
Indices: 16226923--16226975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16226913 CCGGTCTGAT
*
16226923 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16226949 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16226975 C
1 C
16226976 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16228159 original size:26 final size:26
Alignment explanation
Indices: 16228130--16228182 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16228120 CTGGTCCGAT
16228130 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
*
16228156 CTTAGACTGGAGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
16228182 C
1 C
16228183 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:16229181 original size:26 final size:26
Alignment explanation
Indices: 16229132--16229182 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16229122 CCTGTGTGCA
*
16229132 TAGACTGGGAAAGAACTCTATATGCT
1 TAGACTGGGAAAGAACTCCATATGCT
* * *
16229158 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAAAGAACTCCATATGC
16229183 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAAAGAACTCCATATGCT
Found at i:16230218 original size:26 final size:26
Alignment explanation
Indices: 16230189--16230241 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16230179 CCGGTCCGAT
*
16230189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
16230215 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
16230241 C
1 C
16230242 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:16230646 original size:170 final size:170
Alignment explanation
Indices: 16230355--16230704 Score: 447
Period size: 170 Copynumber: 2.1 Consensus size: 170
16230345 CATGCTGTCG
* * * * * *
16230355 ATCCCGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGCTGGGTTTTAGACATGGAATGAACTC
1 ATCCTGCTGCTGATCCTACTGCCACAACCCTCAGTCCGGCTGGATCTTAAACATGGAATGAACTC
* * *
16230420 CATATGCCTAAACCATCCCACGAAATGAGCCTGCGGGCCCTCAGCCGACTGGAGAGGCAGAATGC
66 CATATGCCCAAACCAACCCACGAAATGAGCCTGCGGGCCCTCAACCGACTGGAGAGGCAGAATGC
* *
16230485 ACAAG-CTGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCA
131 ACAAGTC-GAGGATCGACCCGATCCCCCCTGCGTGCTGCCA
* *
16230525 ATCCTGCTGCTGGTCCTACTGTCACAACCCTCAGTCCGGTCT-GATCTTAAAC-TGGGAATGAAC
1 ATCCTGCTGCTGATCCTACTGCCACAACCCTCAGTCCGG-CTGGATCTTAAACAT-GGAATGAAC
* * *
16230588 TCCATATGCCCAAGCCAACCCACGAAATGAGCGTGCGGGCCCTCAACCG-GTCGGAGAGGCAGAA
64 TCCATATGCCCAAACCAACCCACGAAATGAGCCTGCGGGCCCTCAACCGACT-GGAGAGGCAGAA
** * * *
16230652 TGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
128 TGCACAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCA
16230695 ATCCTGCTGC
1 ATCCTGCTGC
16230705 CACAACCCTC
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
169 2 0.01
170 150 0.97
171 3 0.02
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.19
Consensus pattern (170 bp):
ATCCTGCTGCTGATCCTACTGCCACAACCCTCAGTCCGGCTGGATCTTAAACATGGAATGAACTC
CATATGCCCAAACCAACCCACGAAATGAGCCTGCGGGCCCTCAACCGACTGGAGAGGCAGAATGC
ACAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCA
Found at i:16231826 original size:159 final size:157
Alignment explanation
Indices: 16231630--16232067 Score: 540
Period size: 158 Copynumber: 2.8 Consensus size: 157
16231620 CTGGTCCGAT
* * * * *
16231630 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAG
* *
16231694 CCGGCCGAAGAGGCATAATGCGTAAGCTGAGGATCGA-CTCGGTCCCCCTCTGCATGCTACC-AG
65 CCGACCGAAGAGGCAGAATGCGTAAGCT-AGGATCGACCT-GGTCCCCCT-TGCATGCTACCGA-
*
16231757 TCCCGCTGCCACAACCCTCAGTCCGGCTGGGG
126 TCCCGCTGCCACAACCCTCAGTCCGACTGGGG
** * ** *
16231789 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGTGCTCATC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAGC
* * * * * * **
16231854 CGACCGGAGAGGCAGAATACGCAAGCCAAGGATCAACCTGGTCCCCCTTGCGTGCTGTCGATCCC
66 CGACCGAAGAGGCAGAATGCGTAAG-CTAGGATCGACCTGGTCCCCCTTGCATGCTACCGATCCC
* *
16231919 GCTGCCATAACCCTCGGTCCGACTGGGG
130 GCTGCCACAACCCTCAGTCCGACTGGGG
*
16231947 CTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAGC
* * *
16232012 TGACCGAAGAGGTAGAATGCGTAAGCTAGGGATCGGCCTGGTCCCCCTTGCATGCT
66 CGACCGAAGAGGCAGAATGCGTAAGCTA-GGATCGACCTGGTCCCCCTTGCATGCT
16232068 GTATTTCCTG
Statistics
Matches: 234, Mismatches: 40, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 139 0.59
159 89 0.38
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAGC
CGACCGAAGAGGCAGAATGCGTAAGCTAGGATCGACCTGGTCCCCCTTGCATGCTACCGATCCCG
CTGCCACAACCCTCAGTCCGACTGGGG
Found at i:16232131 original size:158 final size:157
Alignment explanation
Indices: 16231471--16232131 Score: 519
Period size: 158 Copynumber: 4.2 Consensus size: 157
16231461 AACTCTGTAT
* * * * *
16231471 GCTTAGACATAGAATGAACTCTGTATGCCTACA-CCAACCTACGAAA-GGAGCATGCGGGCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTA-AGCCAACCCACGAAACGG-GCGTGCGGGTGCTC
* * * * * * * *
16231534 AGCTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGTTGTCAAT
64 AGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTTGCATGCTGT-AAT
** * * *
16231599 CCTACTACCGCAACCCTCAGTCTGGTC-CGA
128 CCCGCTGCCACAACCCTCAGTC-CGTCTCGA
* * * * * * *
16231629 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA
* * * * * **
16231693 GCCGGCCGAAGAGGCATAATGCGTAAG-CTGAGGATC-GACTCGGTCCCCCTCTGCATGCTACCA
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCT-GGTCCCCCT-TGCATGCT-GTA
* * * *
16231756 GTCCCGCTGCCACAACCCTCAGTCCGGCTGGG
126 ATCCCGCTGCCACAACCCTCAGTCCGTCTCGA
* * * * *
16231788 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGTGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * ** * *
16231853 CCGACCGGAGAGGCAGAATACGCAAGCCAAGGATCAACCTGGTCCCCCTTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTTGCATGCTGT-AATCC
* * * * *
16231918 CGCTGCCATAACCCTCGGTCCGACTGGG
130 CGCTGCCACAACCCTCAGTCCGTCTCGA
* * * *
16231946 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * * *
16232011 CTGACCGAAGAGGTAGAATGCGTAAGCTAGGGATCGGCCTGGTCCCCCTTGCATGCTGTATTTCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTTGCATGCTGTA-ATCC
* * ** * *
16232076 TGTTGCCATTACCCTCGGTTCAGTC-CGA
130 CGCTGCCACAACCCTCAG-TCCGTCTCGA
* *
16232104 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16232132 TTAGATTGGG
Statistics
Matches: 395, Mismatches: 93, Indels: 30
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.02
158 267 0.68
159 117 0.30
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTTGCATGCTGTAATCCC
GCTGCCACAACCCTCAGTCCGTCTCGA
Found at i:16232141 original size:26 final size:26
Alignment explanation
Indices: 16232105--16232157 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16232095 TCAGTCCGAT
16232105 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
16232131 CTTAGATTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16232157 C
1 C
16232158 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16232506 original size:26 final size:26
Alignment explanation
Indices: 16232477--16232529 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16232467 CCGGTCTGAT
16232477 CTTAGACT-GGGAATGAACTCCGCATG
1 CTTAGA-TAGGGAATGAACTCCGCATG
* *
16232503 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGCATG
16232529 C
1 C
16232530 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGCATG
Found at i:16232863 original size:159 final size:158
Alignment explanation
Indices: 16232502--16232932 Score: 463
Period size: 158 Copynumber: 2.7 Consensus size: 158
16232492 AACTCCGCAT
*
16232502 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* ** * * *
16232567 CCAGCCGTAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCAACCAAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCC
* ** * *
16232632 TGCTGCTGCAGCCCTCGGTCCGATCCAA
131 CGCTGCCACAACCCTCGGTCCGAGCCAA
* * * * *
16232660 TCTTAGAC-TGGGAATGAACTCTGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * * *
16232724 GCCAACCAAAGAGGCATAATGTGCAAGCCAATGATCGGCCCGGTCCCGCTCTACGTGCTGCCGGT
65 GCCAACCAAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCC-CCCTACGTGCTGCCGAT
* *
16232789 CCCGCTGCCACAACCCTCGGTCCG-GCTAGG
129 CCCGCTGCCACAACCCTCGGTCCGAGCCA-A
* * * * **
16232819 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
** * * * ** * *
16232884 CCGGCC-GAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCAGTCCCCCCT
66 CCAACCAAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCT
16232933 GCGTACTATC
Statistics
Matches: 222, Mismatches: 47, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
157 4 0.02
158 127 0.57
159 90 0.41
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCAACCAAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGAGCCAA
Found at i:16239928 original size:158 final size:158
Alignment explanation
Indices: 16239627--16239918 Score: 356
Period size: 158 Copynumber: 1.8 Consensus size: 158
16239617 ACTCCGTATG
* * *
16239627 CTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCTAACCAACGAAACGAGCGTACGGACGCTCAGC
* * * * **
16239692 CGGTCGGAGAGGCAGAATGCGTAAGTTAGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCT
66 CGGCCGAAAAGGCAGAATGCGCAAGGCAGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCT
*
16239757 GCTATCGCAAACCTTGGTCTAGTCTGAT
131 GCTAGCGCAAACCTTGGTCTAGTCTGAT
* * * *
16239785 CTTAGAC-TAGGAATGAACTCCGTATGCATAAG-TCAACCAATGAAACGAGCGTACGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCT-AACCAACGAAACGAGCGTACGGACGCTCA
* * ** *
16239848 GCCGGCCGAAAAGGCATAATGCGCAAGGCGGGGATCAATCC-GATCCCCCTCTGCGTGCTGTCGA
64 GCCGGCCGAAAAGGCAGAATGCGCAAGGCAGGGATCAGCCCAG-TCCCCC-CTGCATGCTGTCGA
16239912 TCCTGCT
127 TCCTGCT
16239919 GCCACAACCT
Statistics
Matches: 112, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
157 3 0.03
158 89 0.79
159 20 0.18
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCTAACCAACGAAACGAGCGTACGGACGCTCAGC
CGGCCGAAAAGGCAGAATGCGCAAGGCAGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCT
GCTAGCGCAAACCTTGGTCTAGTCTGAT
Found at i:16239936 original size:158 final size:158
Alignment explanation
Indices: 16239627--16239968 Score: 354
Period size: 158 Copynumber: 2.2 Consensus size: 158
16239617 ACTCCGTATG
* * *
16239627 CTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCTAACCAACGAAACGAGCGTACGGACGCTCAGC
* * * * **
16239692 CGGTCGGAGAGGCAGAATGCGTAAGTTAGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCT
66 CGGCCGAAAAGGCAGAATGCGCAAGGCAGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCT
* * *
16239757 GCTATCGCAAACCTTGGTCTAGTCTGAT
131 GCTAGCGCAAACCTCGATCTAGTCTGAT
* * * *
16239785 CTTAGAC-TAGGAATGAACTCCGTATGCATAAG-TCAACCAATGAAACGAGCGTACGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCT-AACCAACGAAACGAGCGTACGGACGCTCA
* * ** *
16239848 GCCGGCCGAAAAGGCATAATGCGCAAGGCGGGGATCAATCC-GATCCCCCTCTGCGTGCTGTCGA
64 GCCGGCCGAAAAGGCAGAATGCGCAAGGCAGGGATCAGCCCAG-TCCCCC-CTGCATGCTGTCGA
**
16239912 TCCTGCT-GC-CACAACCTCGATCTAG-CTGGGG
127 TCCTGCTAGCGCA-AACCTCGATCTAGTCT-GAT
* * *
16239943 CTTACACACGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCATATG
16239969 AAGTAAACCC
Statistics
Matches: 151, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.05
158 124 0.82
159 20 0.13
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCTAACCAACGAAACGAGCGTACGGACGCTCAGC
CGGCCGAAAAGGCAGAATGCGCAAGGCAGGGATCAGCCCAGTCCCCCCTGCATGCTGTCGATCCT
GCTAGCGCAAACCTCGATCTAGTCTGAT
Found at i:16240116 original size:26 final size:26
Alignment explanation
Indices: 16240065--16240117 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16240055 TTGATCCGAT
* * *
16240065 CTTAGAGTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
16240091 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
16240117 C
1 C
16240118 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16240483 original size:26 final size:26
Alignment explanation
Indices: 16240445--16240497 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16240435 CCGGTCCGAT
16240445 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
16240471 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
16240497 C
1 C
16240498 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16240938 original size:158 final size:155
Alignment explanation
Indices: 16240470--16240971 Score: 406
Period size: 158 Copynumber: 3.2 Consensus size: 155
16240460 AACTCTATAT
* * ** *
16240470 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC-AAA-ATGAACGTGCGGGCACTT
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACAGGAA--TGCGGGTGCTC
* * * * * * *
16240533 AGTCGGTCGGAGAGGCAGAATACACAAGCCGTGGATCGACCCGATCCCTCCTGTGTGCTATCAAT
63 AGCCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCC-CCTGCGTGCTACCGAT
* * *
16240598 CTTGCTGTCGTAACCCTCGGTCTGGTCCGA
127 CCT-CTCTCATAACCCTCGGTCTGGTCCGA
* * *
16240628 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGGCAACCCAAGAAACGAGCG--TGCGGGTGCT
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACGAAAC-AG-GAATGCGGGTGCT
* * * * * * * * * *
16240690 GAGCTGACCGGAGAGGCATAATGCACAAGTCAAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTG
62 CAGCCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGAT-CCCC-CTGCGTGCTACCG
* * * ** * ** *
16240755 GTCC-CGCTCCACAACTTTCGATCTGGTTGGG
125 ATCCTCTCT-CATAACCCTCGGTCTGGTCCGA
*
16240786 GCTTACACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAACAGGAATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACAGGAATGCGGGTGCTCAG
**
16240851 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCACCCTGCGTGCTACCGATCC
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCC-CCCTGCGTGCTACCGATCC
* * *
16240916 TATTTCTATAACCCTCGGTCTGGTCCAA
129 TCTCTC-ATAACCCTCGGTCTGGTCCGA
*
16240944 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCC-TATGC
16240972 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 66, Indels: 36
0.72 0.18 0.10
Matches are distributed among these distances:
156 1 0.00
157 25 0.10
158 213 0.82
159 19 0.07
161 1 0.00
162 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACAGGAATGCGGGTGCTCAGC
CGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTGCGTGCTACCGATCCTC
TCTCATAACCCTCGGTCTGGTCCGA
Found at i:16240987 original size:26 final size:26
Alignment explanation
Indices: 16240945--16240997 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16240935 CTGGTCCAAT
*
16240945 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
** *
16240971 CTTAGACTGGGGTTGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
16240997 C
1 C
16240998 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16241686 original size:26 final size:26
Alignment explanation
Indices: 16241648--16241700 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16241638 GGCTCAAAAT
16241648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16241674 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16241700 C
1 C
16241701 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16242012 original size:159 final size:159
Alignment explanation
Indices: 16241673--16242142 Score: 520
Period size: 159 Copynumber: 3.0 Consensus size: 159
16241663 AACTCCGTAT
* * * * *
16241673 GCTTAGACATGGAATGAACTCTGTATGCCTATGCCAACCTACGAAACAAACGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
* * *
16241738 TCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCAGA-CCGATCCCCCCCATGCGTGCTATCC-
66 CCGG-CGGAGAGGCAGAATGTGCAAGCCGGGGATC-GACCCGATCCCCCCTATGCGTGCTA-CCG
* * * *
16241801 ATCCTGCTACCGCAACCCTCAGTCCGGTTTGA
128 ATCCTGCTGCCGCAACCCTCGGTCCGGCTGGA
* * * *
16241833 TCTTAGAC-TGAGAATGAACTCCGTATGCATAAACCAACCCACGAAACAAGCGTGCGGGTGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCA
* * * * *
16241897 GCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTATGCGTGCTACCGG
65 GCCGG-CGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTATGCGTGCTACCGA
* * * *
16241961 TCCCGCTGCCACAACCCTCGGTCTGGCTGGG
129 TCCTGCTGCCGCAACCCTCGGTCCGGCTGGA
* * ** * *
16241992 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
* * * **
16242057 CCGGCTGGAGAGGTAGAATGTGCAAGCCGGGGAACGGCCCGATCCCCCCTA--CGTGCTGTCGAT
66 CCGGC-GGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTATGCGTGCTACCGAT
16242120 CCTGCTGCCGCAACCCTCGGTCC
130 CCTGCTGCCGCAACCCTCGGTCC
16242143 AGTCCAATCT
Statistics
Matches: 255, Mismatches: 49, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
158 32 0.13
159 128 0.50
160 95 0.37
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
CCGGCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTATGCGTGCTACCGATC
CTGCTGCCGCAACCCTCGGTCCGGCTGGA
Found at i:16243695 original size:158 final size:157
Alignment explanation
Indices: 16243391--16244122 Score: 468
Period size: 158 Copynumber: 4.6 Consensus size: 157
16243381 AACTCCATAT
* * * * * * *
16243391 GCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCACGAAACAAGCGTACGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
* * * * * * * * *
16243456 CC-AGTCGGAGAGGCAGAATGCGTAAGTCAGGGACCGACCCGATCCCCCCTGCGTGCTGTCGGTC
66 CCGAG-CGGAGAGGAATAATGCGCAAGCCGGGGATCG-GCTGATCCCCTCTGCGTGCTGTCGGTC
* ** **
16243520 -CAGCTATCGTAACCCTCGGTCCAGTC-CGA
129 TC-GTTGCCACAA-CCTCGGTCCAGTCTCGA
* * * * * *
16243549 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTGT
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGA
* ** *
16243613 GCCGAGCGGAAAGGAATAATGCGCAAGTTGGGGATCGGCATGATCCCCATTTGCGTGCTGTCGGT
65 GCCGAGCGGAGAGGAATAATGCGCAAGCCGGGGATCGGC-TGATCCCC-TCTGCGTGCTGTCGGT
** * * *
16243678 CTCGTTGCCACAACCTCGGT-TTGACTGGG
128 CTCGTTGCCACAACCTCGGTCCAGTCTCGA
* * * * *
16243707 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
** * * * * *
16243772 TTG-GTCGGAGAGGTAGAATGCGCAAGCCGGGG-TCCGGCCTGATCCCCCCTGCGTACTGTCAGT
66 CCGAG-CGGAGAGGAATAATGCGCAAGCCGGGGAT-CGG-CTGATCCCCTCTGCGTGCTGTCGGT
* * * *
16243835 CCTACTGTCG-CA-ACCCTC-ATCCGGTC-CGA
128 -CT-C-GTTGCCACAACCTCGGTCCAGTCTCGA
* * * * * * * *
16243864 TCTTAGACTTGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
* * * * * * *
16243929 CCGA-CCGACGAGGCATAATGTGCAAGCCGGGGATCGTCCGGTCCCCCTCTGCATGCTG-CTGGT
66 CCGAGCGGA-GAGGAATAATGCGCAAGCCGGGGATCGGCTGAT-CCCCTCTGCGTGCTGTC-GGT
* * * *
16243992 CTAGCTGCCACAACCCTCGGTCTAG-CTGGA
128 CTCGTTGCCACAA-CCTCGGTCCAGTCTCGA
* * * * * * *
16244022 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
* * *
16244087 CC-AGCAGGAGAGGCAGAATGCGCAAGCCGAGGATCG
66 CCGAGC-GGAGAGGAATAATGCGCAAGCCGGGGATCG
16244123 ACCCGGTCCC
Statistics
Matches: 438, Mismatches: 110, Indels: 52
0.73 0.18 0.09
Matches are distributed among these distances:
154 2 0.00
155 2 0.00
156 10 0.02
157 115 0.26
158 276 0.63
159 29 0.07
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAG
CCGAGCGGAGAGGAATAATGCGCAAGCCGGGGATCGGCTGATCCCCTCTGCGTGCTGTCGGTCTC
GTTGCCACAACCTCGGTCCAGTCTCGA
Found at i:16244028 original size:315 final size:316
Alignment explanation
Indices: 16243391--16244134 Score: 883
Period size: 315 Copynumber: 2.4 Consensus size: 316
16243381 AACTCCATAT
* * * ** *
16243391 GCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACCCACGAAACAAGCGTACGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAA
* * * *
16243456 CCAGTCGGAGAGGCAGAATGCGTAAGTCAGGGACCGACCCGATCCCCCCTGCGTGCTGTCGGTCC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTACTGTCAGTCC
* * *
16243521 AGCTATCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
131 AGCTATCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
** * * **
16243586 CCCACGAAACGAGCGTACGGGTGCTGTGCCGAGCGGAAAGGAATAATGCGCAAGTTGGGGATCGG
196 CCCACGAAACGAGCGTACGGGCACTGAGCCGAGCCGAAAGGAATAATGCGCAAGCCGGGGATCGG
* * * * * * *
16243651 CATGATCCCCATTTGCGTGCTGTCGGTCTCGTTGCCACAACCTCGGTTTGACTGGG
261 CACGATCCCCATCTGCATGCTGTCGGTCTAGCTGCCACAACCTCGGTTAGACTGGA
* *
16243707 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGGGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAA
*** * * * * *
16243772 TTGGTCGGAGAGGTAGAATGCGCAAGCCGGGGTCCGGCCTGATCCCCCCTGCGTACTGTCAGTCC
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTACTGTCAGTCC
* * *
16243837 TA-CTGTCGCAACCCTC-ATCCGGTCCGATCTTAGACTTGGAATGAACTTCGTATGCATAAGTCA
131 -AGCTATCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
* * * *
16243900 ACCCACGAAATGAGCGTACGGGCACTGAGCCGA-CCGACGAGGCATAATGTGCAAGCCGGGGATC
195 ACCCACGAAACGAGCGTACGGGCACTGAGCCGAGCCGA-AAGGAATAATGCGCAAGCCGGGGATC
* * *
16243964 GTC-CGGTCCCCCTCTGCATGCTG-CTGGTCTAGCTGCCACAACCCTCGGTCTAG-CTGGA
259 GGCACGATCCCCATCTGCATGCTGTC-GGTCTAGCTGCCACAA-CCTCGGT-TAGACTGGA
* * * * * *
16244022 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAA
* *
16244087 CCAG-CAGGAGAGGCAGAATGCGCAAGCC-GAGGATCGACCCGGTCCCCC
66 CCAGTC-GGAGAGGCAGAATGCGCAAGCCAG-GGACCGACCCGATCCCCC
16244135 TACTTGCTGC
Statistics
Matches: 358, Mismatches: 63, Indels: 15
0.82 0.14 0.03
Matches are distributed among these distances:
313 1 0.00
314 34 0.09
315 198 0.55
316 124 0.35
317 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAA
CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTGCGTACTGTCAGTCC
AGCTATCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
CCCACGAAACGAGCGTACGGGCACTGAGCCGAGCCGAAAGGAATAATGCGCAAGCCGGGGATCGG
CACGATCCCCATCTGCATGCTGTCGGTCTAGCTGCCACAACCTCGGTTAGACTGGA
Found at i:16244595 original size:26 final size:26
Alignment explanation
Indices: 16244557--16244609 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16244547 CCGGTCTGAT
16244557 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16244583 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16244609 C
1 C
16244610 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16247353 original size:11 final size:10
Alignment explanation
Indices: 16247334--16247377 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 10
16247324 CGGTTAGGCT
16247334 CTCCGGCGATG
1 CTCC-GCGATG
16247345 CTCCTGCGATG
1 CTCC-GCGATG
16247356 CTCCGACGATG
1 CTCCG-CGATG
16247367 CTCCGACGATG
1 CTCCG-CGATG
16247378 GTACCCTGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 1 0.03
11 30 0.97
ACGTcount: A:0.14, C:0.36, G:0.30, T:0.20
Consensus pattern (10 bp):
CTCCGCGATG
Found at i:16247672 original size:26 final size:26
Alignment explanation
Indices: 16247631--16247683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16247621 TCAATCCGAT
*
16247631 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
16247657 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16247683 C
1 C
16247684 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16248207 original size:26 final size:26
Alignment explanation
Indices: 16248155--16248207 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16248145 CTGGTCTGAT
*
16248155 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
16248181 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
16248207 C
1 C
16248208 CAAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16248704 original size:26 final size:26
Alignment explanation
Indices: 16248668--16248718 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16248658 GTGGTCCAAT
*
16248668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
16248694 CTTAGACTGGGGATAAACTTCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
16248719 ATCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16248771 original size:513 final size:518
Alignment explanation
Indices: 16247482--16248788 Score: 1288
Period size: 524 Copynumber: 2.5 Consensus size: 518
16247472 GCTTGGACAT
** * * * * *
16247482 GGAATGAACTCTATATGCCTAAGCCAAGCCA-C-AGAACGAACGTACGGGCACTCAATCGGCCGG
1 GGAATGAACTCCCTATGCCCAAGCCAACCCATCGA-AAC-AGCGTACGGGCACTCAGTCAGCCGG
* * * * * * *
16247545 AGAGGCAGAATGCAC-AAGCTGGGAATC-GACCCATTCCCCCCTACGTGCTATCGATCCTACTGC
64 AGAGGCAGAATGCGCAAACCAGGG-ATCAG-CCTAGTCCCCCCTGCGTGCTGTCGATCCTACTGC
* * ** * * *
16247608 TGCAACCC-TCAGT-TCAATCCGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACTGGGGAT
127 CGCAACCCGT-GGTCT-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
* * * * * * * *
16247671 GAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCGTGCGACTGTTCACCAGGCTGGAGAGGCA
190 GAACTTCGTATGCCAAAGTCAACCCACGAAACGAGCGTGGGGC-GCTCAGCAGACCGGAGAGGCA
* * * * * *
16247736 TAATGCGTAAGCCGAGAATCAGCCCAGCCCCCCTCTACATGCTGTCGATCCCGCTACCAGTCCTG
254 TAATGCGCAAGTCG-GGATCAGCCCAGCCCCCCACTACATGCTGTCAATCCCGCTACCAGCCCTG
** * *
16247801 CTGCCACAACCCTCGATTCGGTTGCGGCTTAGACAAGGAATGAACTCCGTATACCTAAGCTAACC
318 CTGCCACAACCCTCGATTCGACTGCGGCATAGACAAGGAATGAACTCCATATACCTAAGCTAACC
* ** * **
16247866 CACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAAAATGTGCAAGCTGGGGATCGGCC
383 CACGAAACGAGCGTGCGGGCGCTCAACCGGACAAAGAGGCAAAATGCGCAAGCCAGGGATCGGCC
* * * * * * * *
16247931 CAGTCCCCTCTGTGTGTAATTGATCTGCTACTGGTCATGCTGTCGTAACCCTCGATCTGGTCTGA
448 CAGTCCCCTC---GTCTAAGTGATCTGC-ACTGATCACGCTGCCATAACCCTCGATCTCGACTGA
*
16247996 TCTTAGACTG
509 ACTTAGACTG
** * * ** * *
16248006 GGAATGAACTCTGTATGCCTAAGCCAACCCATGGAATGAGCGTACGGGCGCTCAGTCAGCTGGAG
1 GGAATGAACTCCCTATGCCCAAGCCAACCCATCGAAACAGCGTACGGGCACTCAGTCAGCCGGAG
* * * *
16248071 AGGCAGAATGTGCAAACCGGGGATCGGCCTATTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCA
66 AGGCAGAATGCGCAAACCAGGGATCAGCCTAGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCA
* **
16248136 ACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC-T
131 ACCCGTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTT
* * * * * *
16248200 CTGCATGCCAAAGTGAACCCACGAAACAAGCGTGCGAGTGCTCAGCCGACCGGAGAGGCATAATG
196 C-GTATGCCAAAGTCAACCCACGAAACGAGCGTG-GGGCGCTCAGCAGACCGGAGAGGCATAATG
* * *
16248265 CGCAAGTCGGCGATCAGCCCAGCCCTCCACTACATGCTGTCAATCCCGCTGCTAGCCCTGCTGCC
259 CGCAAGTCGG-GATCAGCCCAGCCCCCCACTACATGCTGTCAATCCCGCTACCAGCCCTGCTGCC
* * * * * * * *
16248330 ACAACCCTTGGTTTGACTGTGGCATAGACATGGAATGAACTCTATATGCCTAAG-TCAACCCATG
323 ACAACCCTCGATTCGACTGCGGCATAGACAAGGAATGAACTCCATATACCTAAGCT-AACCCACG
* * *
16248394 AAACGAGCGTGCGGGCGCTGAGCCGGACAAAGAGGCATAATGCGCAAGCCAGGGATCGGCCC-GA
387 AAACGAGCGTGCGGGCGCTCAACCGGACAAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAG-
* *
16248458 TCCCC-C-TCTACGT-A-CTGC-C-GATCCCGCTGCCATAACCCTCGAT-TCGACTGGGAAC-TA
451 TCCCCTCGTCTAAGTGATCTGCACTGATCACGCTGCCATAACCCTCGATCTCGACT--GAACTTA
16248515 GAC-G
514 GACTG
* *
16248519 TGGAATGAAC-CCCTATGCCCAAGCGAACCCA-CGAAACATGCGTACGGGCACTCAG-CTGGCCG
1 -GGAATGAACTCCCTATGCCCAAGCCAACCCATCGAAACA-GCGTACGGGCACTCAGTC-AGCCG
* * * * *
16248581 GAGAGGCAGAATGCGTAAGCCAGGGATCAGCTTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
63 GAGAGGCAGAATGCGCAAACCAGGGATCAGCCTAGTCCCCCCTGCGTGCTGTCGATCCTACTGCC
* *
16248646 GCAACCCGTGGTGTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAA
128 GCAACCCGTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
** * ** * **
16248711 CTTCGTATATCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGTTGACCAGAGAGGCAGGA
193 CTTCGTATGCCAAAGTCAACCCACGAAACGAGCGTG-GGGCGCTCAGCAGACCGGAGAGGCATAA
16248776 TGCGCAAGTCGGG
257 TGCGCAAGTCGGG
16248789 GATCGAACGG
Statistics
Matches: 649, Mismatches: 117, Indels: 46
0.80 0.14 0.06
Matches are distributed among these distances:
512 6 0.01
513 216 0.33
514 35 0.05
515 4 0.01
517 4 0.01
518 1 0.00
519 4 0.01
523 5 0.01
524 363 0.56
525 10 0.02
526 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (518 bp):
GGAATGAACTCCCTATGCCCAAGCCAACCCATCGAAACAGCGTACGGGCACTCAGTCAGCCGGAG
AGGCAGAATGCGCAAACCAGGGATCAGCCTAGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCA
ACCCGTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTT
CGTATGCCAAAGTCAACCCACGAAACGAGCGTGGGGCGCTCAGCAGACCGGAGAGGCATAATGCG
CAAGTCGGGATCAGCCCAGCCCCCCACTACATGCTGTCAATCCCGCTACCAGCCCTGCTGCCACA
ACCCTCGATTCGACTGCGGCATAGACAAGGAATGAACTCCATATACCTAAGCTAACCCACGAAAC
GAGCGTGCGGGCGCTCAACCGGACAAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCAGTCCCC
TCGTCTAAGTGATCTGCACTGATCACGCTGCCATAACCCTCGATCTCGACTGAACTTAGACTG
Found at i:16249927 original size:26 final size:26
Alignment explanation
Indices: 16249891--16249943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16249881 TCAGTTCGAT
16249891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16249917 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16249943 C
1 C
16249944 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16251054 original size:26 final size:26
Alignment explanation
Indices: 16251016--16251068 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16251006 GGCTCAAAAT
** *
16251016 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
16251042 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
16251068 C
1 C
16251069 GTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:16251913 original size:26 final size:26
Alignment explanation
Indices: 16251884--16251936 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16251874 CCGATCCGAT
16251884 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACGT-GGAATGAACTCCGTATG
16251910 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
16251936 C
1 C
16251937 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCGTATG
Found at i:16252423 original size:26 final size:26
Alignment explanation
Indices: 16252394--16252446 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16252384 CCGGTCCGAT
16252394 CTTAGAC-TGGTAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
16252420 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16252446 C
1 C
16252447 CTGAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16252570 original size:181 final size:179
Alignment explanation
Indices: 16252238--16252601 Score: 430
Period size: 181 Copynumber: 2.0 Consensus size: 179
16252228 TTTGACTGGG
* * *
16252238 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGAGCATGCGGACACTCAA
* * * * *
16252303 CCGATCGGAGAGGCAGAATGCACAAGCCGCGGATTGGCCCGGTCCCCGCTCTGTGCTGGTCTTGC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGCGG--TGGCCCGATCCCCCCTCTGTACTGGTCCTGC
* * * *
16252368 TGCCATAACCCTTGGTCCGGTCCGATCTTAGACTGGTAATGAACTCCGTAT
129 TGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* **
16252419 GCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAACACACGAAACT-AGCATGCGGACGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAA-TGAGCATGCGGACACTCA
* * * *
16252483 ACTGGCCGGAGAGGCAGAATGCATAAGTCG-GG-GGCCCGATCCCCCCTAGC-GTACTGTCGATC
65 ACCGACCGGAGAGGCAGAATGCACAAGCCGCGGTGGCCCGATCCCCCCT--CTGTACTG--G-TC
* * *
16252545 CTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
125 CTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
16252600 GC
1 GC
16252602 ATAAGTCAAC
Statistics
Matches: 155, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
177 13 0.08
178 5 0.03
179 1 0.01
180 3 0.02
181 132 0.85
182 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (179 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGAGCATGCGGACACTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCGCGGTGGCCCGATCCCCCCTCTGTACTGGTCCTGCTG
CCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16252941 original size:26 final size:26
Alignment explanation
Indices: 16252895--16252944 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16252885 GTTCGATCTG
*
16252895 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
16252921 AGACTGGGGATGAA-TGCCGTATGC
1 AGACTGGGAATGAACT-CCGTATGC
16252945 ATAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:16253148 original size:59 final size:59
Alignment explanation
Indices: 16253056--16253169 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 59
16253046 CTGCTACCGT
* * *
16253056 AACCCTCGGTCTGGTTTGATCTTAGATTGGGAATGAACACCGTATGCTTAGACTGTCGC
1 AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACACCATATGCTTAGACTGTCGC
16253115 AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACACCATATGCTTAGACTG
1 AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACACCATATGCTTAGACTG
16253170 GGGATGAACT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (59 bp):
AACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACACCATATGCTTAGACTGTCGC
Found at i:16253171 original size:26 final size:26
Alignment explanation
Indices: 16253135--16253187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16253125 CCGGTTTGAT
16253135 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
16253161 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
16253187 C
1 C
16253188 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16253661 original size:159 final size:158
Alignment explanation
Indices: 16253359--16253861 Score: 541
Period size: 159 Copynumber: 3.2 Consensus size: 158
16253349 ACTCCGTATA
16253359 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* ** * * *
16253424 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGTCCA-GCCCGAT-CCCCTCCTGTGTGCTATCGAT
66 C-GTCGGAGAGGCAGAATGCGTAAGCCGGGG-AAAGGCCCGGTCCCCCT-CTGCGTGCTACCGAT
* *
16253487 CCTGCTACCGTAACCCTCGGTCCGGTCCGAT
128 CCTGCTGCCGTAACCCTCGGTCCGATCCGAT
* * * * * * *
16253518 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAATGAGCATTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * **
16253582 CCAGTCAGAGAGGCATAATGCGTAAGCCAGGGAAAGGCCCGGTCCCCCTCTGCGTATTACC-AGT
65 CC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGAAAGGCCCGGTCCCCCTCTGCGTGCTACCGA-T
* ** ** **
16253646 CCCGCTGCCACAACCCTCGGTCCGATTGGGG
128 CCTGCTGCCGTAACCCTCGGTCCGATCCGAT
* * * *
16253677 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * ** *
16253742 CGATCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCC-CTGCATGCTACCGATCC
66 CG-TCGGAGAGGCAGAATGCGTAAGCCGGGGAAAGGCCCGGTCCCCCTCTGCGTGCTACCGATCC
* *
16253806 TGCTGTCGTAACCCTCGATCCGATCCGAT
130 TGCTGCCGTAACCCTCGGTCCGATCCGAT
*
16253835 CTTAGAC-TGGTAATGAACTCCATATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
16253862 TTAGACTGGT
Statistics
Matches: 277, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 58 0.21
159 210 0.76
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGTCGGAGAGGCAGAATGCGTAAGCCGGGGAAAGGCCCGGTCCCCCTCTGCGTGCTACCGATCCT
GCTGCCGTAACCCTCGGTCCGATCCGAT
Found at i:16253871 original size:26 final size:26
Alignment explanation
Indices: 16253835--16253887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16253825 CCGATCCGAT
16253835 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGTAATGAACTCCATATG
* *
16253861 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCATATG
16253887 C
1 C
16253888 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCATATG
Found at i:16255448 original size:26 final size:26
Alignment explanation
Indices: 16255410--16255462 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16255400 GGCTCAAACT
*
16255410 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGCATG
*
16255436 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAAATCCGCATG
16255462 C
1 C
16255463 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGCATG
Found at i:16257074 original size:26 final size:26
Alignment explanation
Indices: 16257042--16257111 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
16257032 TCTTATACTA
16257042 GGAATGAACTCCATATGCTTAGAC-T
1 GGAATGAACTCCATATGCTTAGACAT
* *
16257067 GGGGATGAACTCTATATGCTTAGACAT
1 -GGAATGAACTCCATATGCTTAGACAT
*
16257094 GGAATGAACTCCGTATGC
1 GGAATGAACTCCATATGC
16257112 CGAAGCCAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 37 0.97
27 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCATATGCTTAGACAT
Found at i:16257506 original size:26 final size:26
Alignment explanation
Indices: 16257477--16257529 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16257467 CCGATCTGAT
16257477 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
16257503 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
16257529 C
1 C
16257530 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:16257883 original size:26 final size:26
Alignment explanation
Indices: 16257845--16257897 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16257835 TCGGTCCGAT
16257845 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
**
16257871 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
16257897 C
1 C
16257898 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:16258344 original size:26 final size:26
Alignment explanation
Indices: 16258308--16258360 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16258298 CCGGTCCGAT
*
16258308 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16258334 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16258360 C
1 C
16258361 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16258739 original size:26 final size:26
Alignment explanation
Indices: 16258688--16258740 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16258678 TCGGTTCGAT
*
16258688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16258714 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16258740 C
1 C
16258741 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16259734 original size:26 final size:26
Alignment explanation
Indices: 16259698--16259750 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16259688 TCGATCTGAT
16259698 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16259724 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16259750 C
1 C
16259751 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16260085 original size:26 final size:26
Alignment explanation
Indices: 16260056--16260108 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16260046 CCGGTCCGAT
16260056 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
* *
16260082 CTTAGATATGGAATGAACTTCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
16260108 C
1 C
16260109 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:16260618 original size:26 final size:26
Alignment explanation
Indices: 16260582--16260634 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16260572 CCGGTTCGAT
16260582 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
16260608 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16260634 C
1 C
16260635 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16260935 original size:196 final size:196
Alignment explanation
Indices: 16260574--16260936 Score: 476
Period size: 196 Copynumber: 1.9 Consensus size: 196
16260564 CCCTCTATCC
* * *
16260574 GGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAA
1 GGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
* * * * * ** *
16260639 GTCAACCCGTAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGGAGAATGCGCAAGCTGGGG
66 GCCAACCCATAAAACGAACGTACGGGTGCTCAGCCGGCAGGAGAGCCAGAATGCGCAAGCCGGGG
** * * * *
16260704 ATTGGCCCGGTCCCCCCTACGTGCCGTCGATCCTGCTCTTGGTCCTGCTGTCGCAACCTTCAGTC
131 ACCGACCCGATCCCCCCTACGTGCCATCAATCCTGCTCTTGGTCCTGCTGTCGCAACCTTCAGTC
16260769 T
196 T
*
16260770 GGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTTGTATGCCTA
1 GGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTTCGTATGCCTA
* * * * *
16260834 GGCCAACCCATGAAACGAACGTACGGGTGCTCAGTCGGTAGGAGAGCCAGAATGGGCAAGCCGGG
65 AGCCAACCCATAAAACGAACGTACGGGTGCTCAGCCGGCAGGAGAGCCAGAATGCGCAAGCCGGG
* **
16260899 GACCGACCCGATCCCCCCTGCGTGTTATCAATCCTGCT
130 GACCGACCCGATCCCCCCTACGTGCCATCAATCCTGCT
16260937 GCCTCAACAC
Statistics
Matches: 140, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
196 139 0.99
197 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (196 bp):
GGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
GCCAACCCATAAAACGAACGTACGGGTGCTCAGCCGGCAGGAGAGCCAGAATGCGCAAGCCGGGG
ACCGACCCGATCCCCCCTACGTGCCATCAATCCTGCTCTTGGTCCTGCTGTCGCAACCTTCAGTC
T
Found at i:16262011 original size:26 final size:26
Alignment explanation
Indices: 16261973--16262025 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16261963 GGCTCAAACT
16261973 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16261999 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16262025 C
1 C
16262026 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16262340 original size:26 final size:26
Alignment explanation
Indices: 16262304--16262356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16262294 CTGGTTCTAT
*
16262304 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
16262330 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16262356 C
1 C
16262357 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:16263044 original size:26 final size:26
Alignment explanation
Indices: 16263006--16263058 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16262996 TCGATCCGAT
* *
16263006 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
16263032 CTTAGACAT-GGAATCAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
16263058 C
1 C
16263059 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:16263300 original size:158 final size:158
Alignment explanation
Indices: 16263032--16263533 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 158
16263022 ACTCTGTATG
* * * * * * *
16263032 CTTAGACAT-GGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAG
* * * * ** * ** *
16263096 -CCGTCCAGAGAGGTAAAATGCACAAGCCTGGGATTAACCCGATCCCCCCTGCGTGCTATCGATC
65 TCCG-ACGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* ***
16263160 CTACTGTTGCAACCCTCGGTCTGGTCCGAT
129 CTGCTGCCACAACCCTCGGTCTGGTCCGAT
* * * * * *
16263190 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCAATGAAATGAGCGTTCGGGGGCTGAG-
1 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAGT
* * * * *
16263254 CCGACAGGAGAGGCATAATGCGTCAGCCAGGGATCGGCTCGATCCCCCTCTGTGTGCTGTC-AGT
66 CCGAC-GGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGA-T
** **
16263318 -CTCGCTGCCACAACCCTCGGTCCT-GTTGGGG
128 CCT-GCTGCCACAACCCTCGGT-CTGGTCCGAT
* * * *
16263349 CTTAGACAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCA
1 CTTAGAC--TGGGAATGAACTTCATATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCA
* * * * * *
16263413 GTCGGTCGGAGAGGTAGAATGCGTAATCCGGGGATCGACCCGAT-CCCCCTACGTGCTGTCGATC
64 GTCCGACGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
*
16263477 CTGCTGCCACAACCCTCGGTCTGGTCCGCT
129 CTGCTGCCACAACCCTCGGTCTGGTCCGAT
* *
16263507 CTTAGAGTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTTCATATGC
16263534 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 20 0.07
158 126 0.47
159 42 0.16
160 77 0.29
161 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTCAGT
CCGACGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCTGGTCCGAT
Found at i:16263543 original size:26 final size:26
Alignment explanation
Indices: 16263507--16263559 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16263497 CTGGTCCGCT
* * *
16263507 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16263533 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16263559 C
1 C
16263560 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16263917 original size:26 final size:26
Alignment explanation
Indices: 16263888--16263940 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16263878 CCGATCAGAT
16263888 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16263914 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16263940 C
1 C
16263941 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16264249 original size:159 final size:158
Alignment explanation
Indices: 16263914--16264409 Score: 502
Period size: 159 Copynumber: 3.1 Consensus size: 158
16263904 ACTCCGTATG
** * * *
16263914 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGC
* * * * * ** * * *
16263979 CGACAGAAAAGGCAGAATGCACAAGCTGGGGATCTACCCGGT-CCCATCTACATGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCTCT-CGTGCTGTCGATCC
*
16264043 TGCTGCCGCAACCCTCGGTCCGGTCCGAT
130 TGCTGCCACAACCCTCGGTCCGGTCCGAT
* * ** * *
16264072 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACAAGCGTGCTGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAG
* * * *
16264136 CCGACCGGAGAGGCATAATGCGTAAGCAGGGGTTCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCTCT-CGTGCTGTCGATC
* * ** *
16264201 CTGCTACCATAACCCTCGGTCCGGCTGGGGT
129 CTGCTGCCACAACCCTCGGTCCGG-TCCGAT
* * * *
16264232 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAAGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGC
* * *
16264296 CGGCCGGAGAGGCAGAATGTGCAAGCCA-GGGATCGGCCC-AGTCCCTCCTC-CGTGCTGTTGAT
66 CGACCGGAGAGGCAGAATGCGCAAG-CAGGGGATCGGCCCGA-TCCC-CCTCTCGTGCTGTCGAT
*
16264358 CCTGCTGCCACAACCCTCAGTCCGAGTCCGAT
128 CCTGCTGCCACAACCCTCGGTCCG-GTCCGAT
*
16264390 CTTAGA-TTGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
16264410 TTTATGCTTA
Statistics
Matches: 273, Mismatches: 55, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 120 0.44
159 142 0.52
160 10 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCTCTCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:16264441 original size:26 final size:26
Alignment explanation
Indices: 16264390--16264442 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16264380 CGAGTCCGAT
* **
16264390 CTTAGATTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16264416 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16264442 C
1 C
16264443 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16264559 original size:185 final size:184
Alignment explanation
Indices: 16264243--16264618 Score: 495
Period size: 185 Copynumber: 2.0 Consensus size: 184
16264233 TAGACATGGA
* *
16264243 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCAAGCACTCAGCCGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAAGCACTCAGCCGGCCGGAGAGG
* ***
16264308 CAGAATGTGCAAGCCAGGGATCGGCCCAGTCCCTCCTCCGTGCTGTTGATCCTGCTGCCACAACC
66 CAGAATGTGCAAGCCAGGGATCGGCCCAGTCCCCCCTCCGTGCTACCGATCCTGCTGCCACAACC
* * **
16264373 CTCAGTCCGAGTCCGATCTTAGATTGGGAATGAACTCTTTATGCTTAGACTGGGG
131 CTCAGTCCG-GTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGG
* * * *
16264428 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCT-TGCAGGCACTCAGCCGGTCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG-TGTGCAAGCACTCAGCCGGCCGGAGAG
* * * * * *
16264492 GTAGAATGTGTAAGTCGGGGATCGGCCC-GATCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAA
65 GCAGAATGTGCAAGCCAGGGATCGGCCCAG-TCCCCCCTCCGTGCTACCGATCCTGCTGCCACAA
* * * *
16264556 CCCTCGGTCTGGTTCGATCTTAGACTGAGAATGAACTCCGTATGTTTAGACTGGGG
129 CCCTCAGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGG
16264612 ATGAACT
1 ATGAACT
16264619 TCAAGGGCTG
Statistics
Matches: 165, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
184 47 0.28
185 117 0.71
186 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAAGCACTCAGCCGGCCGGAGAGG
CAGAATGTGCAAGCCAGGGATCGGCCCAGTCCCCCCTCCGTGCTACCGATCCTGCTGCCACAACC
CTCAGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:16264920 original size:26 final size:26
Alignment explanation
Indices: 16264884--16264936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16264874 TTGATCCGCT
16264884 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16264910 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16264936 C
1 C
16264937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16266063 original size:159 final size:158
Alignment explanation
Indices: 16265778--16266071 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 158
16265768 GCTTAGACAT
* ** * * *
16265778 GGAATGAACTCTGTATGCCTAAGCCACCCACGAAATGAGTGTACGGGTGCTTAGCCAGCCAGAGA
1 GGAATGAACTCTGTATGCCTAAGCAACCCACGAAACAAGCGTACGAGTGCTGAGCCAGCCAGAGA
* ** * * * * *
16265843 GGTAGAATGCGTAAGCTGGGGATCGACCCGATCCCCACTTGTGTGCTATCGATCTTGCTACCGCA
66 GGCAGAATGCGTAAGCCAGGCATCGACCCGATCCCCACTTGCGTGCTATCGATCCTACTACCACA
16265908 ACCCTTAGTCCGATCTGATCTTAGATTG
131 ACCCTTAGTCCGATCTGATCTTAGATTG
16265936 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTAC-AGTCGCTGAGCC-GACC-G
1 GGAATGAACTCTGTATGCCTAAG-CAACCCACGAAACAAGCGTACGAGT-GCTGAGCCAG-CCAG
* * * * *
16265998 AAGAGGCATAATGCGTAAGCCAGGCATTGGCCCGATCCCC-CTCTGCGTGCTGTCGGTCCTACTA
63 -AGAGGCAGAATGCGTAAGCCAGGCATCGACCCGATCCCCACT-TGCGTGCTATCGATCCTACTA
16266062 CCACAACCCT
126 CCACAACCCT
16266072 CGGTCCAGCT
Statistics
Matches: 112, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
158 29 0.26
159 83 0.74
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCTGTATGCCTAAGCAACCCACGAAACAAGCGTACGAGTGCTGAGCCAGCCAGAGA
GGCAGAATGCGTAAGCCAGGCATCGACCCGATCCCCACTTGCGTGCTATCGATCCTACTACCACA
ACCCTTAGTCCGATCTGATCTTAGATTG
Found at i:16266284 original size:26 final size:27
Alignment explanation
Indices: 16266245--16266300 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
16266235 GGTCCAATCA
16266245 TAGACTGGGAATGAACTCCGTATG-CT
1 TAGACTGGGAATGAACTCCGTATGCCT
*
16266271 TAGACTGGTG-ATGAACTCTGTATGCCT
1 TAGACTGG-GAATGAACTCCGTATGCCT
16266298 TAG
1 TAG
16266301 TCAACCCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (27 bp):
TAGACTGGGAATGAACTCCGTATGCCT
Found at i:16267016 original size:25 final size:26
Alignment explanation
Indices: 16266966--16267017 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16266956 GGCTCAAAAT
16266966 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16266992 CTTAGAC-ATGGAATG-ACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16267017 C
1 C
16267018 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16267941 original size:158 final size:157
Alignment explanation
Indices: 16267673--16268174 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 157
16267663 CCGACTGGGG
* * **
16267673 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * ** *
16267737 TCGGTCGGAGAGGCAGAATGGGCATG-TCAGGGATCGGCCCGATCCCCCCTATGTGTTGTCGATC
65 CCGATCGGAGAGGCAGAATGTGCAAGCT-AGGGATCGGCCCG-TCCCCCCTGCGTGCTGTCGATC
** * *
16267801 CTGCTATCGTAACCCTTGGTCCAATCCGAT
128 CTGCTGCCGTAACCCTAGGTCTAATCCGAT
* * * * * *
16267831 CTTAGACTAGAAATGAACTCCATATGCCTAAGTCAACCTACGAAACGAGCGTTCGGGCACTAAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * *
16267896 CGA-CTGGAGAGGCATAATGTGCAAGCTAGGGATTGGCCTTGTCCCCCTCTGCGTGCTGTCGAT-
66 CGATC-GGAGAGGCAGAATGTGCAAGCTAGGGATCGGCC-CGTCCCCC-CTGCGTGCTGTCGATC
** * **
16267959 CTCGCTGCCACAACCCTAGGTCTAA-CTGGGG
128 CT-GCTGCCGTAACCCTAGGTCTAATC-CGAT
* * *
16267990 CTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAGGAGCGTACGGGCACTCTGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
* * * * *
16268055 CGATCAGAGAGACAGAATGTGCAAGC-CGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCT
66 CGATCGGAGAGGCAGAATGTGCAAGCTAG-GGATCGGCCC-GTCCCCCCTGCGTGCTGTCGATCC
* ** *
16268119 TGCTGCCGTAACCCTCGGTCTGGTCTGAT
129 TGCTGCCGTAACCCTAGGTCTAATCCGAT
*
16268148 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCATATGC
16268175 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 149 0.54
159 126 0.45
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGC
CGATCGGAGAGGCAGAATGTGCAAGCTAGGGATCGGCCCGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGTAACCCTAGGTCTAATCCGAT
Found at i:16268189 original size:26 final size:26
Alignment explanation
Indices: 16268148--16268200 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16268138 CTGGTCTGAT
16268148 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16268174 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16268200 C
1 C
16268201 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16268342 original size:684 final size:675
Alignment explanation
Indices: 16266991--16268240 Score: 1538
Period size: 684 Copynumber: 1.8 Consensus size: 675
16266981 AACTCCGTAT
*
16266991 GCTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGC
1 GCTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGC
* * *
16267056 CAGCCAGAGAGGTAGAATGCGAAAGCCGAGGATGGGCCCGATCCCCCCTATGTGCTATCGACCTT
66 CAGCCAGAGAGGCAGAATGCGAAAGCAGAGGATCGGCCCGATCCCCCCTATGTGCTATCGACCTT
* * * * *
16267121 GCTATTGCAACCCTCAATCCAGTCTGATCTTAGACTGGAATGAACTCTATATGCATAAGTCAACC
131 GCTATCGCAACCCTCAATCCAATCCGATCTTAGACTGAAATGAACTCCATATGCATAAGTCAACC
* * * * *
16267186 AAAAAACGAGTGTACGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGGCCT
196 AAAAAACGAGCGTACGGGCACTAAGCCAGCCGAAGAGGCATAATGCGCAAGCAGAGGATCGGCCT
* ** *
16267251 GATCCCCCTCTGCGTGCTGTCAGTCCCACTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATG
261 GATCCCCCTCTGCGTGCTGTCAGTCCCACTACCACAACCCTAGGTCTAACTGGGGCTTAGACAAG
* * * * ** *
16267316 GAATGAACTCCCTATGCCTAAGCTAACCCGTGAAATGGGTATGCGGGTGCTCAACCAACCGGAGA
326 GAATGAACTCCATATGCCTAAGCCAACCCATGAAAGGGGTA-GCGGGCACTCAACCAACCAGAGA
* **
16267381 GGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTTTGTGCTGCCGATCCTACTGCTGGTC
390 GACAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTA-TGCTGG-C
*
16267446 CTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAACAG
453 C-ACTGT--CAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAAACAG
* * * *
16267511 GGAATGAACTCCGTCTGCCTAAGCCAACCCATGGAACGAGCGTGTGTGAGCTCAGTCGGTTGGAA
515 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGAGAGCTCAGTCGGTTGGAA
* * * * *
16267576 AGGCAGAATGCGTAAGTCGGGGATCAGCCTGGTCCCCCTCGACGTGCTGTCAATCCCGCTATCAG
580 AGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCGACGTGCTCTCAATCCCGCTATCAG
* *
16267641 TCCTGCTGCCATAACCCTTGGTCCGACTGGG
645 TCCTGCTACCATAACCCTCGGTCCGACTGGG
*
16267672 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
* * * * * * * * *
16267737 TCGGTCGGAGAGGCAGAATGGGCATGTCAG-GGATCGGCCCGATCCCCCCTATGTGTTGTCGATC
65 CCAGCCAGAGAGGCAGAATGCGAAAG-CAGAGGATCGGCCCGATCCCCCCTATGTGCTATCGA-C
* *** *
16267801 C-TGCTATCGTAACCCTTGGTCCAATCCGATCTTAGACTAGAAATGAACTCCATATGCCTAAGTC
128 CTTGCTATCGCAACCCTCAATCCAATCCGATCTTAGACT-GAAATGAACTCCATATGCATAAGTC
** * * * *
16267865 AACCTACGAAACGAGCGTTCGGGCACTAAGCC-GACTGGAGAGGCATAATGTGCAAGCTAG-GGA
192 AACC-AAAAAACGAGCGTACGGGCACTAAGCCAG-CCGAAGAGGCATAATGCGCAAGC-AGAGGA
* * * *
16267928 TTGGCCTTG-TCCCCCTCTGCGTGCTGTC-GATCTCGCTGCCACAACCCTAGGTCTAACTGGGGC
254 TCGGCC-TGATCCCCCTCTGCGTGCTGTCAG-TCCCACTACCACAACCCTAGGTCTAACTGGGGC
**
16267991 TTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAGGAGCGTA-CGGGCACTCTGC
317 TTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCATGAAAGG-G-GTAGCGGGCACTCAAC
* * ** *
16268055 CGATCAGAGAGACAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGAT-CT
380 CAACCAGAGAGACAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
*
16268119 -TGCT-G-C-C-GT-AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
445 ATGCTGGCCACTGTCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTA
* * * * * *
16268178 GACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATGTGAGCGCTCAGTCG
510 AACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGAGAGCTCAGTCG
16268241 ATCAGAGAGG
Statistics
Matches: 486, Mismatches: 72, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
672 101 0.21
675 2 0.00
676 1 0.00
678 1 0.00
680 1 0.00
681 20 0.04
682 123 0.25
683 34 0.07
684 196 0.40
685 4 0.01
686 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (675 bp):
GCTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGC
CAGCCAGAGAGGCAGAATGCGAAAGCAGAGGATCGGCCCGATCCCCCCTATGTGCTATCGACCTT
GCTATCGCAACCCTCAATCCAATCCGATCTTAGACTGAAATGAACTCCATATGCATAAGTCAACC
AAAAAACGAGCGTACGGGCACTAAGCCAGCCGAAGAGGCATAATGCGCAAGCAGAGGATCGGCCT
GATCCCCCTCTGCGTGCTGTCAGTCCCACTACCACAACCCTAGGTCTAACTGGGGCTTAGACAAG
GAATGAACTCCATATGCCTAAGCCAACCCATGAAAGGGGTAGCGGGCACTCAACCAACCAGAGAG
ACAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTATGCTGGCCAC
TGTCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAAACAGGGAATG
AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGAGAGCTCAGTCGGTTGGAAAGGCAG
AATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCGACGTGCTCTCAATCCCGCTATCAGTCCTGC
TACCATAACCCTCGGTCCGACTGGG
Found at i:16268740 original size:26 final size:26
Alignment explanation
Indices: 16268701--16268751 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16268691 GGTCCGATCA
16268701 TAGACTAGGAATGAACTCCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* * *
16268727 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCATATGC
16268752 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:16269546 original size:158 final size:159
Alignment explanation
Indices: 16268868--16269568 Score: 528
Period size: 159 Copynumber: 4.4 Consensus size: 159
16268858 TGCCGATCCC
* * * * * * *
16268868 GCTACCGTTCCTGTTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAGCTCCGTAT
1 GCTACCGATCCTGCTACCACAACCCTCAGTCCGGCTCGAGCTTAGACATGGAATGAACTCCGTAT
* * *
16268933 GCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGACAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAG
* *
16268998 TC-GAGGATC-GACCTGATCCCCCTCTGCGT
131 TCAG-GGATCGGCCCT-ATCCCTCTCTGCGT
* * * * * * *
16269027 GCTACCGGTCTTGCCACCACAACCCTC-GATCCGGCTGGGGCTTAGACATGGAATGATCTCCCTA
1 GCTACCGATCCTGCTACCACAACCCTCAG-TCCGGCTCGAGCTTAGACATGGAATGAACTCCGTA
* * * *** * *
16269091 TGCCTAAGCCAACCCATGAAACGGGCATGCGGATGCTCAGTCGACCAGAGAGGCAGAATGCACAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAA
*
16269156 GTCAGGGATCGGCCCGATCCC-CTCCTGCGT
130 GTCAGGGATCGGCCCTATCCCTCT-CTGCGT
* * ** * * *
16269186 GTTATCGATCCTGCTACCGTAACCCTCAGACTGG-TCCGATCTTAGAC-TAGGAATGAACTCCGT
1 GCTACCGATCCTGCTACCACAACCCTCAGTCCGGCT-CGAGCTTAGACAT-GGAATGAACTCCGT
** * ** * * * * * * ** * *
16269249 ATGAGTAAGTCAACTGACAAAATGAGCGTGTGGGCGCTGAGCTGGTCGAAGAGGCATAATGCACA
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCACA
* * * *
16269314 AGTCGGGGATCGGCCC-GTCCCTCTTTGCGC
129 AGTCAGGGATCGGCCCTATCCCTCTCTGCGT
** * * * * * *
16269344 GCTGTCGGTACCAT--TGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
1 GCTACCGAT-CC-TGCTACCACAACCCTCAGTCCGGCTCGAGCTTAGACATGGAATGAACTCCGT
* * * * *
16269407 ATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCGGCTGGAGAGGCAGAATG-AGC
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCA-C
*
16269471 AAGCCAGGGATCGGCCCTATCCCTC-CTGCGT
128 AAGTCAGGGATCGGCCCTATCCCTCTCTGCGT
* ** * * * * *
16269502 GCTACCGATCCTGTTGTCGCAGCCCTC-GTTCTGGTTCGATCTTAGAC-TGGAAATGAACTCCGT
1 GCTACCGATCCTGCTACCACAACCCTCAG-TCCGGCTCGAGCTTAGACATGG-AATGAACTCCGT
16269565 ATGC
64 ATGC
16269569 TTAAACTCGG
Statistics
Matches: 416, Mismatches: 108, Indels: 37
0.74 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 7 0.02
158 162 0.39
159 240 0.58
160 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTACCGATCCTGCTACCACAACCCTCAGTCCGGCTCGAGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAG
TCAGGGATCGGCCCTATCCCTCTCTGCGT
Found at i:16269583 original size:26 final size:26
Alignment explanation
Indices: 16269554--16269620 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
16269544 TAGACTGGAA
16269554 ATGAACTCCGTATGCTTAAACTCG-GG
1 ATGAACTCCGTATGCTTAAACT-GAGG
*
16269580 ATGAACTCCGTATGCTTAGACTGAGG
1 ATGAACTCCGTATGCTTAAACTGAGG
*
16269606 ATGAACTCTGTATGC
1 ATGAACTCCGTATGC
16269621 CTAAGTCAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 1 0.03
26 37 0.97
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAAACTGAGG
Found at i:16270466 original size:26 final size:26
Alignment explanation
Indices: 16270437--16270489 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16270427 CCGGTCCTAT
*
16270437 CTTAGACTG-GGAATGAACTCCTTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
16270463 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
16270489 C
1 C
16270490 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:16271548 original size:159 final size:159
Alignment explanation
Indices: 16271343--16271654 Score: 371
Period size: 159 Copynumber: 2.0 Consensus size: 159
16271333 CCGATCTGAT
* ** * * *
16271343 CTTAGACTGGGAATGAACTCCATATGCATAAGTTAACCCACGAAACGAGCGTGCGAGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATACATAAGCCAACCCACAAAACGAGCGTACGAGCGCTGAGC
*
16271408 CAACCGAAGAGGCATAATGCAG-AAGCCGAGGAAT-GGC-CTAGTCCCCCTCTACGTTCTGTCAG
66 CAACCGAAGAGGCATAATG-AGCAAGCCG-GGAATCGGCTC-AGTCCCCCTCTACGTGCTGTCAG
** *
16271470 TCCTGCTGCCAAAACCCTTGGTCTGGCTGGGG
128 TCCCACTGCCAAAACCCTCGGTCTGGCTGGGG
* * * *
16271502 CTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTGAG
1 CTTAGAC-TGGGAATGAACTCCATATACATAAGCCAACCCACAAAACGAGCGTACGAGCGCTGAG
* * * * * *
16271566 CCAGCCGAAGAGGCATAATGTGCAAGCTGGGGATCGGCTCGGTCCCCCTCTACGTGCTGTCGGTC
65 CCAACCGAAGAGGCATAATGAGCAAGCCGGGAATCGGCTCAGTCCCCCTCTACGTGCTGTCAGTC
*
16271631 CCACTGCCACAACCCTCGGTCTGG
130 CCACTGCCAAAACCCTCGGTCTGG
16271655 TATTTGGTAG
Statistics
Matches: 128, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
158 5 0.04
159 121 0.95
160 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCATATACATAAGCCAACCCACAAAACGAGCGTACGAGCGCTGAGC
CAACCGAAGAGGCATAATGAGCAAGCCGGGAATCGGCTCAGTCCCCCTCTACGTGCTGTCAGTCC
CACTGCCAAAACCCTCGGTCTGGCTGGGG
Found at i:16272123 original size:26 final size:26
Alignment explanation
Indices: 16272094--16272146 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16272084 GGCTCAAAAT
16272094 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
16272120 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
16272146 C
1 C
16272147 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:16272998 original size:26 final size:26
Alignment explanation
Indices: 16272962--16273014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16272952 CCAGTTTGAT
16272962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16272988 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16273014 C
1 C
16273015 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16274045 original size:26 final size:26
Alignment explanation
Indices: 16274016--16274068 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16274006 TCGATCCGAT
*
16274016 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16274042 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16274068 C
1 C
16274069 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16274397 original size:26 final size:26
Alignment explanation
Indices: 16274368--16274419 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16274358 CCGATTCGAT
*
16274368 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16274394 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16274420 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16274915 original size:158 final size:159
Alignment explanation
Indices: 16274394--16275213 Score: 653
Period size: 159 Copynumber: 5.2 Consensus size: 159
16274384 ACTTCGTATG
* * * *
16274394 CTTAGACAT-GGAATGAACTCCGTATGGCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * ** ** * * * *
16274458 C-CGATCGGA-ATAGTAGAATGCATAAGCCAGGGA-CTGGCC-CAGTTCCCCCTTGCGTGCTATC
65 CTAG-CCGGAGA-GGCAGAATGCGCAAGCTGGGGATC-GACCTGAG-TCCCCCCTGCGTGCTGTC
* * *
16274519 GATCCTGCTACCACAACCCTTGGTCTGATCCGAT
126 GATCCTGCTGCCGCAACCCTCGGTCTGATCCGAT
* * * * * ** *
16274553 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACGAGTGTGCAAGCACTAAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * **
16274618 TAGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCT-AGTCCCCCTCTGCGTGCTACCGATC
66 TAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGAGTCCCCC-CTGCGTGCTGTCGATC
* * * * * * **
16274682 CCGCTGTCGAAACCCTCTGTCTG-GCTGGGG
130 CTGCTGCCGCAACCCTCGGTCTGATC-CGAT
* *
16274712 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * ** *
16274776 CTGGCCGGAGAGGCAGAATGAGCAAGCTAGGGATCGGTCTGA-TCCCCCCTGTGTGCTGTCGATC
65 CTAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGAGTCCCCCCTGCGTGCTGTCGATC
*
16274840 CTGCTGCCGCAACCCTCGGTCTAATCCGAT
130 CTGCTGCCGCAACCCTCGGTCTGATCCGAT
* * * * * * * * *
16274870 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCATCCTACGAAACAAACGTGTGGGCACTGA-C
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * * ** *
16274934 TCGGCCGGAGAGGCATAATGCGTAAG-TCCGGGTTTGGCCTGATTACCTTCTGCGTGCTGTCGGT
66 T-AGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCTGAGTCCCCCCTGCGTGCTGTCGAT
* * * * * **
16274998 CCCGCTGCCACAACCCTCGATCCGA-CTAGGG
129 CCTGCTGCCGCAACCCTCGGTCTGATC-CGAT
*
16275029 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
16275093 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCG-GTCCCCCCTGTGTGCTGTCGATC
65 CTAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGAGTCCCCCCTGCGTGCTGTCGATC
* *
16275157 CTGCTGCCGTAACCCTCGGT-TCGGTCCGAT
130 CTGCTGCCGCAACCCTCGGTCT-GATCCGAT
*
16275187 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
16275214 TTAGACTGGG
Statistics
Matches: 514, Mismatches: 126, Indels: 43
0.75 0.18 0.06
Matches are distributed among these distances:
157 5 0.01
158 180 0.35
159 322 0.63
160 7 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
TAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGAGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCTGATCCGAT
Found at i:16274988 original size:317 final size:316
Alignment explanation
Indices: 16274393--16275216 Score: 957
Period size: 317 Copynumber: 2.6 Consensus size: 316
16274383 AACTTCGTAT
* * * *
16274393 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * * * * *
16274458 CCGATCGGA-ATAGTAGAATGCA-TAAGCCAGGGA-CTGGCCCAGTTCCCCCTTGCGTGCTATCG
66 CCGGCCGGAGA-GGCAGAATG-AGTAAGCCAGGGATC-GG-CCAGATCCCCCCTGTGTGCTGTCG
* * * *
16274520 ATCCTGCTACCACAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
127 ATCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAG
* * * *
16274585 TCATCCCATGAAACGAGTGTGCAAGCACTAAGCTAGTCGGAGAGGCATAATGCGCAAGCTGGGGA
192 TCATCCCACGAAACAAGTGTG-AAGCACTAAGCTAGCCGGAGAGGCATAATGCGCAAGCTCGGGA
* * * * *
16274650 TCGACCTAGTCCCCCTCTGCGTGCTACCGATCCCGCTGTCGA-AACCCTCTG-TCTGGCTGGG
256 TCGACCTAGTCACCCTCTGCGTGCTACCGATCCCGCTG-CCACAACCCTC-GATCCGACTAGG
* *
16274711 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
16274776 CTGGCCGGAGAGGCAGAATGAGCAAGCTAGGGATCGGTCTGATCCCCCCTGTGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGAGTAAGCCAGGGATCGGCCAGATCCCCCCTGTGTGCTGTCGATCC
*
16274841 TGCTGCCGCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAT
131 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAT
* * * * * *
16274906 CCTACGAAACAAACGTGTG-GGCACTGA-CTCGGCCGGAGAGGCATAATGCGTAAG-TCCGGGTT
196 CCCACGAAAC-AA-GTGTGAAGCACTAAGCT-AGCCGGAGAGGCATAATGCGCAAGCT-CGGGAT
* * * * ** *
16274968 TGGCCT-GATTACCTTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTAGG
257 CGACCTAG-TCACCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCCGACTAGG
*
16275028 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
16275093 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGAGTAAGCCAGGGATCGGCCAGATCCCCCCTGTGTGCTGTCGATCC
* * *
16275158 TGCTGCCGTAACCCTCGGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
131 TGCTGCCGCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
16275217 GACTGGGGAT
Statistics
Matches: 432, Mismatches: 63, Indels: 23
0.83 0.12 0.04
Matches are distributed among these distances:
316 8 0.02
317 333 0.77
318 84 0.19
319 7 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGAGTAAGCCAGGGATCGGCCAGATCCCCCCTGTGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAT
CCCACGAAACAAGTGTGAAGCACTAAGCTAGCCGGAGAGGCATAATGCGCAAGCTCGGGATCGAC
CTAGTCACCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCCGACTAGG
Found at i:16275936 original size:26 final size:26
Alignment explanation
Indices: 16275899--16275948 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16275889 GCTCAAACTT
16275899 TTAGACTAGGAATGAACTCCGTATCC
1 TTAGACTAGGAATGAACTCCGTATCC
*
16275925 TTAGAC-ATGGAATGAACTCTGTAT
1 TTAGACTA-GGAATGAACTCCGTAT
16275949 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATCC
Found at i:16276547 original size:159 final size:158
Alignment explanation
Indices: 16276119--16276618 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 158
16276109 AACTTCGTAT
* ** *
16276119 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCATAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * *
16276184 CTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCAGCCTGGTTCCCCCTGTGTGTTGTCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGTGTGCTGCCAATCC
*
16276249 GACTGCCACAACCCTCGGTCTGGTCTGA
131 GACTGCCACAACCCTCAGTCTGGTCTGA
* * * * ** * *
16276277 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
16276341 GCC-AGCCCGAGAGGCATAATGCGCAAGCCAGAGATCTGCTC-AGTCCCCCTCTGTGTGCTGCCG
65 GCCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGA-TCCCCC-CTGTGTGCTGCCA
* * * * *
16276404 GTGTC-ACTGCCATAACCCTCAGTTTGG-CTAGG
127 AT-CCGACTGCCACAACCCTCAGTCTGGTCT-GA
* * * * **
16276436 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16276501 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGTGTGCTGCCAATCC
* * * *
16276566 TACTG-C-CAACCCTCGGTCTGATCCGA
131 GACTGCCACAACCCTCAGTCTGGTCTGA
* *
16276592 TCTTAGAC-TGGGAATGAACTCTGTATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
16276619 GTTAGACTGG
Statistics
Matches: 263, Mismatches: 67, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
155 1 0.00
156 34 0.13
157 4 0.02
158 103 0.39
159 117 0.44
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGTGTGCTGCCAATCC
GACTGCCACAACCCTCAGTCTGGTCTGA
Found at i:16277025 original size:26 final size:26
Alignment explanation
Indices: 16276974--16277026 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16276964 CCGGTCTAAT
*
16276974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16277000 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16277026 C
1 C
16277027 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16277504 original size:26 final size:26
Alignment explanation
Indices: 16277475--16277527 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16277465 CTGGTCCGAT
16277475 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16277501 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16277527 C
1 C
16277528 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16278459 original size:158 final size:158
Alignment explanation
Indices: 16278225--16278726 Score: 532
Period size: 158 Copynumber: 3.2 Consensus size: 158
16278215 ACTCATTACG
* *
16278225 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* *
16278290 TGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGTGTGCTATCGATCCT
66 TGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGTGTGCTATCGATCCT
** *
16278355 GCT-CTCGTAACCCTCGGTCCGGTCCAAT
131 GCTAC-CACAACCCTCGGTCCGGTCTAAT
* * * * *
16278383 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
16278447 CTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCC-CAGTCCCCCTCTGTGTGCTGTCTAT
65 CTGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGA-TCCCCC-CTGTGTGCTATCGAT
* * * **
16278511 CCCGCTGCCACAACCCTCGATCCGG-CTAGGG
128 CCTGCTACCACAACCCTCGGTCCGGTCTA-AT
* * *
16278542 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GACGTGCAAGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGCGCTCAG
* * * * * * * * *
16278606 CCGACCGGAGAGGCAAAACGCGCGAGCTGGGGATCCG-TTGGATCCCCCTTGCGTGCGATCGATC
65 CTGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCT-GATCCCCCCTGTGTGCTATCGATC
* *
16278670 CTGCTACCACAACCCTCTGTCCGGTCTGAT
129 CTGCTACCACAACCCTCGGTCCGGTCTAAT
*
16278700 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16278727 TTAGCTAGGG
Statistics
Matches: 279, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 153 0.55
159 120 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
TGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGTGTGCTATCGATCCT
GCTACCACAACCCTCGGTCCGGTCTAAT
Found at i:16278737 original size:26 final size:25
Alignment explanation
Indices: 16278700--16278751 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
16278690 CCGGTCTGAT
16278700 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGG-ATGAACTCCATATG
*
16278726 CTTAG-CTAGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCATATG
16278751 C
1 C
16278752 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCATATG
Found at i:16279141 original size:501 final size:501
Alignment explanation
Indices: 16278197--16279278 Score: 1317
Period size: 501 Copynumber: 2.2 Consensus size: 501
16278187 GTGGCTCAAA
* * *
16278197 ATCTTAGACTGGGAATGAACT-CATTACGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCA
1 ATCTTAGACTGGGAATGAACTCCA-TATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCA
* * * * * *
16278260 ACCCATGAAACGAGCGTGCAGGCACTCAGCTGACCGGAGAGGCAGAATGCACAAGCCGGGGATCG
64 ACCCACGAAACGAGCGTGCAGGCACTCAACCGACCGGAGAGGCACAATGCACAAGCCAGGGACCG
**
16278325 GCCTGATCCCCCCTGTGTGCTATCGATCCTGCTCTCGTAACCCTCGGTCCGGTCCAATCTTAGAC
129 GCCTGATCCCCCCTACGTGCTATCGATCCTGCTCTCGTAACCCTCGGTCCGGTCCAATCTTAGAC
*
16278390 TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCTGGCCGA
194 TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCTGGCCGA
* * * * * *
16278455 AGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGTGTGCTGTCTATCCCGCTGCC
259 AGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGTATGCTGCCGATCCCACTGAC
16278520 ACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
324 ACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * ***
16278585 AATGGACGTGCAAGCGCTCAGCCGACCGGAGAGGCAAAACGCGCGAGCTGGGGATCCGTTGGATC
389 AACGGACGTGCAAGCGCTCAGCCGACCGGAGAGGCAAAACGCGCAAGCCGGGGATCAGCCCGATC
* * *
16278650 CCC-CTTGCGTG-CGATCGATCCTGCTACCACAACCCTCTGTCCGGTCTG
454 CCCTC-TGCGTGTCGAT-AATCCTGCTACCACAACCCTCAGTCCGGTCTC
16278698 ATCTTAGACTGGGAATGAACTCCATATGCTTAG-CTAGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * *
16278762 CCACGAAACGAGCGTGCGGGCATTCAACCGCCCAGGAGAGGCACAATGCGCAAGTCAGGGACCGG
66 CCACGAAACGAGCGTGCAGGCACTCAACCGACC-GGAGAGGCACAATGCACAAGCCAGGGACCGG
* * * **
16278827 -CTCGATCCCCCCTACGTGCTGTCGATCCTGCTGC-CGTAACCCTTGGTCTGGTCTGATCTTAGA
130 CCT-GATCCCCCCTACGTGCTATCGATCCTGCT-CTCGTAACCCTCGGTCCGGTCCAATCTTAGA
* * * * * *
16278890 CTGGGAATGAACTCTGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGTACTGAGCTGGTCG
193 CTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCTGGCCG
* * * *
16278955 GAGAGGCATAATGCGTAAGTC-GAGGATCGACCCAGTCCCCCTCT-TCATGCTGCCGGTCCCACT
258 AAGAGGCATAATGCGCAAGCCAG-GGATCGACCCAGTCCCCCTCTGT-ATGCTGCCGATCCCACT
* * * *
16279018 GACACAACCTTCTG-TCTGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
321 GACACAACCCTC-GATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * ** * * * *
16279082 ATGAAACGGGCGTGCGGGTGTTCAGCCGACCTGAGAGGCAGAATATG-G-AAGCCGGGGATCAGC
385 ACGAAACGGACGTGCAAGCGCTCAGCCGACCGGAGAGGCA-AA-ACGCGCAAGCCGGGGATCAGC
* * * * ** *
16279145 CCGATCCCCTCTGCGTGTTGCTAATCCTGTTGCCGTAACCCTCAGTCTGGTCTC
448 CCGATCCCCTCTGCGTGTCGATAATCCTGCTACCACAACCCTCAGTCCGGTCTC
* * * *
16279199 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGAAGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
16279264 CCAC-AAACCGAGCGT
66 CCACGAAA-CGAGCGT
16279279 CCGAGTGCTC
Statistics
Matches: 496, Mismatches: 71, Indels: 27
0.84 0.12 0.05
Matches are distributed among these distances:
500 58 0.12
501 386 0.78
502 50 0.10
503 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCAGGCACTCAACCGACCGGAGAGGCACAATGCACAAGCCAGGGACCGGC
CTGATCCCCCCTACGTGCTATCGATCCTGCTCTCGTAACCCTCGGTCCGGTCCAATCTTAGACTG
GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCTGGCCGAAG
AGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGTATGCTGCCGATCCCACTGACAC
AACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGACGTGCAAGCGCTCAGCCGACCGGAGAGGCAAAACGCGCAAGCCGGGGATCAGCCCGATCCC
CTCTGCGTGTCGATAATCCTGCTACCACAACCCTCAGTCCGGTCTC
Found at i:16279237 original size:26 final size:26
Alignment explanation
Indices: 16279201--16279253 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16279191 CTGGTCTCAT
*
16279201 CTTAGA-TTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGAA-GAACTCCGTATG
16279227 CTTAGACTGGGGAAGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
16279253 C
1 C
16279254 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:16279965 original size:26 final size:26
Alignment explanation
Indices: 16279923--16279974 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16279913 GGCTCAAAAT
16279923 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16279949 CTTAGACAT-GGAGTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16279975 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16280725 original size:27 final size:26
Alignment explanation
Indices: 16280668--16280726 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
16280658 TTAGACTGGG
***
16280668 AATGAACTCCGTATGCTAAGACATGG
1 AATGAACTCCGTATGCTAAGACAACC
*
16280694 AATGAACTCCGTATGCTTAAGCCAACC
1 AATGAACTCCGTATGC-TAAGACAACC
*
16280721 CATGAA
1 AATGAA
16280727 ACGAGCATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (26 bp):
AATGAACTCCGTATGCTAAGACAACC
Found at i:16281191 original size:26 final size:26
Alignment explanation
Indices: 16281162--16281211 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16281152 TTGATTCGAT
*
16281162 CTTAAACT-GGGAATGAACTTCGTATG
1 CTTAAACTAGGG-ATGAACTCCGTATG
*
16281188 CTTAGACTAGGGATGAACTCCGTA
1 CTTAAACTAGGGATGAACTCCGTA
16281212 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGGATGAACTCCGTATG
Found at i:16281547 original size:26 final size:26
Alignment explanation
Indices: 16281518--16281570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16281508 CCTGTCCGAT
16281518 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
16281544 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
16281570 C
1 C
16281571 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:16282390 original size:26 final size:26
Alignment explanation
Indices: 16282352--16282403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16282342 CTGGTCTGAT
16282352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16282378 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16282404 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16282541 original size:185 final size:184
Alignment explanation
Indices: 16282189--16282563 Score: 441
Period size: 184 Copynumber: 2.0 Consensus size: 184
16282179 GAAACCCTCA
* * * * * *
16282189 GTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
1 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCAC
* * * * *
16282254 TCAGCCGCCTGGAAAGGCAGAATGCACAAGTCGAGGATCGATCCGATCCCCCCTGCGTGCTGCCG
66 TCAGCCGCCTGGAAAGGCAGAAAGCACAAGCCGAGGACCGATCCGATCCCCCCTACGTGCTACCG
* * *
16282319 ATCCTGCTGCCGCAACACTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCC
131 ATCCTGCTACCGCAACACTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCC
* *
16282373 GTATGCTTAGACAT-GGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTATGGGCA
1 GTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCA
* * * * * * *
16282437 CTCAGTCGACC-GGAGAGGTAGAAAGCGCAAGCCGAGGACC-AGCTTGAATCCCCCCTATGTGCT
65 CTCAGCCG-CCTGGAAAGGCAGAAAGCACAAGCCGAGGACCGATC-CG-ATCCCCCCTACGTGCT
** * **
16282500 ATGGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCC
127 ACCGATCCTGCTACCGCAACACTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCC
16282558 GTATGC
1 GTATGC
16282564 CAAAGTTAAC
Statistics
Matches: 159, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
183 2 0.01
184 85 0.53
185 72 0.45
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCAC
TCAGCCGCCTGGAAAGGCAGAAAGCACAAGCCGAGGACCGATCCGATCCCCCCTACGTGCTACCG
ATCCTGCTACCGCAACACTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCC
Found at i:16283612 original size:26 final size:26
Alignment explanation
Indices: 16283574--16283626 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16283564 GGCTCAAACT
16283574 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16283600 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16283626 C
1 C
16283627 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16284412 original size:158 final size:158
Alignment explanation
Indices: 16284085--16284468 Score: 371
Period size: 158 Copynumber: 2.4 Consensus size: 158
16284075 CTGTCGATCC
* * ** * * * *
16284085 TGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTTTGATCTTTGACTGGGAAGGAACTCCGTA
1 TGCTGCTGATCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGACTGGGAAGGAACTCCCTA
* * * * * *
16284150 TGCCTAAACCAACCCATGAAATGAACATGCGGGTGCTTAGCCGATCGGAGAGTTAGAATGCGTAA
66 TGCCTAAACCAACCCATGAAATGAACATGCGGGCGCTCAGCCGATCGGAGAGGTAAAACGCGCAA
16284215 ATCGGGGATGACCCGGTCCCCCTCTGCA
131 ATCGGGGATGACCCGGTCCCCCTCTGCA
* * *
16284243 TGCTG-TCGATCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAACTCCC
1 TGCTGCT-GATCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGAC-TGGGAAGGAACTCCC
* ** * *
16284306 TATGCCTAAGCCAACCCACT-AAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAAAACGCG
64 TATGCCTAAACCAACCCA-TGAAATGAACATGCGGGCGCTCAGCCGATCGGAGAGGTAAAACGCG
* * * **
16284370 CAAGTCGGGGATCGGCTCGGTCCCCC-CTGTG
128 CAAATCGGGGAT-GACCCGGTCCCCCTCTGCA
**** * * * * * *
16284401 TGCTGCTGATCCTGCTATTGTAACCCTCGGTCCTATTAGATCTTAGACTGGGAATGAACTCCATA
1 TGCTGCTGATCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGACTGGGAAGGAACTCCCTA
16284466 TGC
66 TGC
16284469 TTAGACTGGG
Statistics
Matches: 182, Mismatches: 38, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 166 0.91
159 14 0.08
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
TGCTGCTGATCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGACTGGGAAGGAACTCCCTA
TGCCTAAACCAACCCATGAAATGAACATGCGGGCGCTCAGCCGATCGGAGAGGTAAAACGCGCAA
ATCGGGGATGACCCGGTCCCCCTCTGCA
Found at i:16284689 original size:26 final size:26
Alignment explanation
Indices: 16284651--16284703 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16284641 CCTATCTGAT
*
16284651 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16284677 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
16284703 C
1 C
16284704 CGAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16285571 original size:26 final size:26
Alignment explanation
Indices: 16285521--16285571 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16285511 GATCTGATCT
*
16285521 TTAGACTAGGAATGAACTCTATATGA
1 TTAGACTAGGAATGAACTCCATATGA
*
16285547 TTAGAC-ATGGAATGAACTCCGTATG
1 TTAGACTA-GGAATGAACTCCATATG
16285572 CCTAATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGA
Found at i:16286348 original size:26 final size:26
Alignment explanation
Indices: 16286319--16286371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16286309 CCGGTCTGAT
16286319 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
16286345 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16286371 C
1 C
16286372 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16287071 original size:26 final size:26
Alignment explanation
Indices: 16287033--16287085 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16287023 GGCTTAAACC
16287033 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16287059 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16287085 C
1 C
16287086 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16288399 original size:355 final size:347
Alignment explanation
Indices: 16287528--16288401 Score: 926
Period size: 355 Copynumber: 2.5 Consensus size: 347
16287518 TTGACTGCGA
* * * ** * *
16287528 CAACCTTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATTCCTAGACATGGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
** * *
16287593 TCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGG-GCTCAGCTGGTTGGAGAGGCAGAA
66 TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGCGCTCAGCTGGTCGGAGAGGCAGAA
** ** * *
16287657 TGTACAAGCCAGGGATCAATCTGGTCCC-CCTCTGCGTGT-T---T--CCGATCCTGCTGCCACA
130 TGCGCAAGCCAGGGATC-GGCTGGTCCCTCC-CTACGTGTGTCGATCCCCGATCCTGCTACCACA
* *
16287715 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAAC
193 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAA
* * * * * **
16287780 CGGCGTGTGGGTGCTCAACCGATCGGAGAGGCAGAATCATAAGCCAGGGATCGGTTCGATCCCCC
258 CGGCGTGCGGGCGCTCAACCGATCGGAGAGGCAAAAGCACAAGCCAGGGATCGGCCCGATCCCCC
* * * *
16287845 CTGTGTGCTACTGATCCTGCTATCG
323 CTGCGTGCTACTGACCCTACTACCG
* * * * * * *
16287870 CAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGAACTCGACATGCTTAGA-TTGGGGATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAA
* * * * * * *
16287934 CTCCGTATGCCTAAGTCAATCGATGAAACGAGTGTGTGGGCGCTCAGCCT-GTCGGAGAGGCATA
65 CTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CTGGTCGGAGAGGCAGA
* * * *
16287998 ATACGGAAGCCAGGGATCGGCTCGGTCCCTCTCTACATGCTGTCGATCCCGCTGTAGGTCCTGCT
129 ATGCGCAAGCCAGGGATCGGCT-GGTCCCTCCCTACGTG-TGTCGATCCC-C-G-A--TCCTGCT
* *
16288063 ACCACAACCCTCGGTCCGGCTGGTGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCA
187 ACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * **
16288128 C-AAAATGAGTGTGCGGGCGCTCAGCCGGTTGGAGAGGCAAAACGCACAAGCTGGGGATCGGCCC
252 CGAAAACG-GCGTGCGGGCGCTCAACCGATCGGAGAGGCAAAA-GCACAAGCCAGGGATCGGCCC
** *
16288192 GATCCCCCCTGCGTGCTGTTGACCCTACTGCCG
315 GATCCCCCCTGCGTGCTACTGACCCTACTACCG
*
16288225 CAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
* *
16288290 TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCTGGTCGGAGAGGTAGAAT
66 TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAAT
* *
16288355 GCGCAAGCCAGGGA-CTGGCCTGATCCCTCCCTCCGTGTTGTCGATCC
131 GCGCAAGCCAGGGATC-GG-CTGGTCCCTCCCTACGTG-TGTCGATCC
16288402 TGTTGTCGCA
Statistics
Matches: 426, Mismatches: 83, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
341 6 0.01
342 120 0.28
343 4 0.01
344 1 0.00
347 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
352 1 0.00
353 4 0.01
354 99 0.23
355 184 0.43
356 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (347 bp):
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAAT
GCGCAAGCCAGGGATCGGCTGGTCCCTCCCTACGTGTGTCGATCCCCGATCCTGCTACCACAACC
CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAACGG
CGTGCGGGCGCTCAACCGATCGGAGAGGCAAAAGCACAAGCCAGGGATCGGCCCGATCCCCCCTG
CGTGCTACTGACCCTACTACCG
Found at i:16288573 original size:159 final size:158
Alignment explanation
Indices: 16288271--16288710 Score: 334
Period size: 159 Copynumber: 2.8 Consensus size: 158
16288261 AACTCCATAT
** * * * ** *
16288271 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGTTCAA
* * * * * * * * * * * *
16288336 CTGGTCGGAGAGGTAGAATGCGCAAGCC-AGGGA-CTGGCCTGATCCCTCCCTCCGTGTTGTC-G
66 CCGCTCGAAGAGGCAAAATGCACAAGCCGA-GGATC-AGCCCGATCCC-CCCTGCATGCTGCCAG
* ** * * *
16288398 ATCCTGTTGTCGCAACCCTAAGTTCGGTCT-GA
128 -TCCCGTTACCACAACCATAAGTTC-GACTGGA
* * * * * * *
16288430 TCTTAGAC-TAGGAGTGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGAGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGTTCA
* * * * * * *
16288494 GCCGAC-CGGAGAGGCATAATGCACGAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCTGCCAG
65 ACCG-CTCGAAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATCCCCC-CTGCATGCTGCCAG
** *
16288558 TCCCGTTACCACAACCATCGGTTCGACTGGG
128 TCCCGTTACCACAACCATAAGTTCGACTGGA
* * *
16288589 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGTTCAA
* *
16288654 CCGCTCGAAGAGGCAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCT
66 CCGCTCGAAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCT
16288711 ACCGATACTA
Statistics
Matches: 223, Mismatches: 49, Indels: 19
0.77 0.17 0.07
Matches are distributed among these distances:
158 15 0.07
159 204 0.91
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGTTCAA
CCGCTCGAAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCTGCCAGTCC
CGTTACCACAACCATAAGTTCGACTGGA
Found at i:16288777 original size:26 final size:26
Alignment explanation
Indices: 16288748--16288800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16288738 CCGGTCCAAT
*
16288748 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16288774 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16288800 C
1 C
16288801 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16289728 original size:26 final size:26
Alignment explanation
Indices: 16289688--16289737 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16289678 TGGTTAGATG
16289688 TTAGACTGGGAATGAACTCCGTATAC
1 TTAGACTGGGAATGAACTCCGTATAC
*
16289714 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
16289738 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAC
Found at i:16290184 original size:158 final size:158
Alignment explanation
Indices: 16289884--16290219 Score: 381
Period size: 158 Copynumber: 2.1 Consensus size: 158
16289874 CTGATCTGAT
* * * * *
16289884 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * * *
16289949 CGTCGGAGAGGCATAATGCGCAAGCTGGGGATGGACCCGATCCCTCTCTACGTGCTGTCGGTCCC
66 CGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCTCCCTACGTGCTGTCGATCCC
*
16290014 ACTGCCATAACCCTCGGTCCGGATGGGG
131 ACTGCCACAACCCTCGGTCCGGATGGGG
* *
16290042 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * *
16290106 TCGGCCAGAGAGGCATAATGCGCAATCTGGGGATCGACTCGATCCC-CCCTGCGTGTTGTCGATC
65 -CCGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCTCCCTACGTGCTGTCGATC
*** * * * **
16290170 TTGCTGTCGCAACCCTCGGTCC-GATCCGAT
129 CCACTGCCACAACCCTCGGTCCGGAT-GGGG
*
16290200 CATAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
16290220 TGTAAGCTTA
Statistics
Matches: 147, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 4 0.03
158 103 0.70
159 40 0.27
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
CGCCAGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGATCCCTCCCTACGTGCTGTCGATCCC
ACTGCCACAACCCTCGGTCCGGATGGGG
Found at i:16290596 original size:526 final size:513
Alignment explanation
Indices: 16289503--16290625 Score: 1161
Period size: 513 Copynumber: 2.2 Consensus size: 513
16289493 TCAGTCTTGA
* * * *
16289503 TGCCACAAACCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGATGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* *
16289568 ACGAAACGGG-GATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCT
66 ACGAAACGGGCG-TACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACT
* * * * * * **
16289632 CGATTCCCCTTACGTGCTACCGATCCTGCTACCACAACCGTCGGTCTGGTTAGATGTTAGACTGG
130 CGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGATCAGATCATAGACTGG
* *
16289697 GAATGAACTCCGTATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACAAAACGAG
195 GAATGAACTCCGTATACTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACGAG
* * * * **** *
16289762 CGTACGGGCACTCAGCTGGTCGGAGAGGCAGAATGCAAAAGTTGGGGATCGGCCCGATCCCCCCC
260 CATACGCGCACTCAGCCGGTCGAAGAGGCAGAATGCAAAAGCCACGGATCAGCCCGATCCCCCCC
* * ** * * * * *
16289827 TGCGTGCTGCCGTTCCTGTTGTTGGTCCTACTATCGCAACCCTCGGTCTGATCTGATCTTAGACT
325 TGCGTGCTGCCGTTCCCGCTGTCAGTCCTACTACCACAACCCTCAGTCCGATCTGAGCTTAGACT
* * * * * *
16289892 GGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTTCGGGTGCTGAGCCGTCGGAG
390 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTTCGGGTGCTGACCCGCCGAAG
* * * * * *
16289957 AGGCATAATGCGCAAGCTGGGGATGGACCCGATCCCTCTCTACGTGCTGTCGGTCCCAC
455 AGGCAGAATGCGCAAGCTGGGGACGGACCAGATCCCCCTCTACGTCCTGTCGATCCCAC
* *
16290016 TGCCATAACCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGATGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * *
16290081 ATGAAACGGGCGTACGGGTGCTCAGTCGGCCAGAGAGGCATAATGCGCAATCTGGGGATCGACTC
66 ACGAAACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACTC
* * ** * ** * *
16290146 GATCCCCCCTGCGTGTTGTCGATCTTGCTGTCGCAACCCTCGGTCCGATCCGATCATAGACTGGG
131 GATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGATCAGATCATAGACTGGG
*
16290211 AATGAACTCTGTA-AGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACGAG
196 AATGAACTCCGTATA-CTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACGAG
* * **
16290275 CATGCGAACGCTTAGTCGATCAGAGAGGCCGGTCGAAGAGGCATAATGCGTAAGCCACGGATCAG
260 CATACG--CGC--A--C--TC----A-GCCGGTCGAAGAGGCAGAATGCAAAAGCCACGGATCAG
* * *
16290340 CCCGATCCCCCTCTGCTTGCTGCC-TATCCCGCTGTCAGTCCTACTGCCACAACCCTCAGTCCGA
312 CCCGATCCCCCCCTGCGTGCTGCCGT-TCCCGCTGTCAGTCCTACTACCACAACCCTCAGTCCGA
* * *
16290404 -CTGGGGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACGTAT-GG
376 TCT-GAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGT-TCGG
* *
16290466 GTGCTTACCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGACCGG-CTTAG-TCCCCCT-TACGT
438 GTGCTGACCCG-CCGAAGAGGCAGAATGCGCAAGCTGGGGA-CGGAC-CAGATCCCCCTCTACGT
***
16290528 CCTGTCGATCTTGC
500 CCTGTCGATCCCAC
* * * * * * *
16290542 TGTCACAACCCTCGGTCCTG-TCTGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAAC
1 TGCCACAACCCTCGGTCCGGAT-GGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
* *
16290605 CCACGAAACGAGCGTTCGGGC
64 CCACGAAACGGGCGTACGGGC
16290626 ACTGAGCCAG
Statistics
Matches: 496, Mismatches: 90, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
512 1 0.00
513 227 0.46
514 1 0.00
515 2 0.00
517 1 0.00
519 1 0.00
521 2 0.00
525 6 0.01
526 217 0.44
527 35 0.07
528 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (513 bp):
TGCCACAACCCTCGGTCCGGATGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACTC
GATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCCGATCAGATCATAGACTGGG
AATGAACTCCGTATACTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
ATACGCGCACTCAGCCGGTCGAAGAGGCAGAATGCAAAAGCCACGGATCAGCCCGATCCCCCCCT
GCGTGCTGCCGTTCCCGCTGTCAGTCCTACTACCACAACCCTCAGTCCGATCTGAGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTTCGGGTGCTGACCCGCCGAAGA
GGCAGAATGCGCAAGCTGGGGACGGACCAGATCCCCCTCTACGTCCTGTCGATCCCAC
Found at i:16290925 original size:26 final size:26
Alignment explanation
Indices: 16290885--16290936 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16290875 CGGTTCGATA
16290885 TTAGACTGGGAATGAACCTCGTATGC
1 TTAGACTGGGAATGAACCTCGTATGC
* *
16290911 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACCTCGTATGC
16290937 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACCTCGTATGC
Found at i:16291129 original size:26 final size:26
Alignment explanation
Indices: 16291090--16291141 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16291080 TTTGGTACAA
**
16291090 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACACGGAATGAACTCCGTAT
*
16291116 TCTTAGACACGGAATGAACTCTGTAT
1 TCTTAGACACGGAATGAACTCCGTAT
16291142 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACACGGAATGAACTCCGTAT
Found at i:16291312 original size:26 final size:26
Alignment explanation
Indices: 16291276--16291328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16291266 CCGGTCTGGA
**
16291276 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
16291302 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
16291328 C
1 C
16291329 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:16291659 original size:26 final size:26
Alignment explanation
Indices: 16291618--16291670 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16291608 TAGGTTCAAT
16291618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16291644 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16291670 C
1 C
16291671 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16291938 original size:196 final size:183
Alignment explanation
Indices: 16291584--16292122 Score: 537
Period size: 196 Copynumber: 2.9 Consensus size: 183
16291574 GCGTGTTACC
* * * ** *
16291584 GATCCTGCTACCGCAACCTTCGGTTAGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
1 GATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
16291649 ACTAGGGATGAACTTCGTATGCATAAGTCAACCCACGAAAGGAGCGTACGTGCGCTCAGTCGACC
66 ACTAGGGATGAACTTCGTATGCCTAAGTCAACCCATGAATGAAGCGTACGGGCGCTCAGTCG-GC
* * * *
16291714 GGAGAGGCAAAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCAGATCCTACTGC
130 AGAGAGGCAAAATACGTAAGCTGAGGATCGACCCGATCCCCCCT--GTG-T---G------CTG-
16291779 TG
182 TG
* * *
16291781 G-TCCTGCTGCTGCAACCCTCAGTCCGG-TCTGATCTTAGACTGGGAATGAACTCTGTACGCTTA
1 GATCCTGCTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
16291844 GAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATCAAGCGTGCGGGCGCTCAGTCGG
65 GACTA-GGGATGAACTTCGTATGCCTAAGTCAACCCATGAATGAAGCGTACGGGCGCTCAGTCGG
* * **
16291908 TCAGAGAGGCAGAATACGCAAGCTGAGGATCGATTCGATCCCCCCTGTGTGCTGTG
129 -CAGAGAGGCAAAATACGTAAGCTGAGGATCGACCCGATCCCCCCTGTGTGCTGTG
* * * *
16291964 GATCCTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTAGATTAGGAATGAACTCCGTATGCTTAG
1 GATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * **
16292029 ACTGGGGATGAACTTCATATGCCTAAGTCAACCCATGCAATGAA-CGTACGGGCGCTCAACCGGC
66 ACTAGGGATGAACTTCGTATGCCTAAGTCAACCCATG-AATGAAGCGTACGGGCGCTCAGTCGGC
* *
16292093 TAGAGAGGCATAATACGTAAACTGAGGATC
130 -AGAGAGGCAAAATACGTAAGCTGAGGATC
16292123 AGCTTGGTTT
Statistics
Matches: 287, Mismatches: 47, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
183 4 0.01
184 129 0.45
185 7 0.02
190 1 0.00
193 1 0.00
194 3 0.01
195 3 0.01
196 138 0.48
197 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (183 bp):
GATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTAGGGATGAACTTCGTATGCCTAAGTCAACCCATGAATGAAGCGTACGGGCGCTCAGTCGGCA
GAGAGGCAAAATACGTAAGCTGAGGATCGACCCGATCCCCCCTGTGTGCTGTG
Found at i:16292100 original size:184 final size:184
Alignment explanation
Indices: 16291782--16292122 Score: 456
Period size: 184 Copynumber: 1.9 Consensus size: 184
16291772 CTACTGCTGG
* * *
16291782 TCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTACGCTTAGAC
1 TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTACGCTTAGAC
* * **
16291847 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATCAAGCGTGCGGGCGCTCAGTCGGTCAG
66 ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAATCAAGCGTACGGGCGCTCAACCGGTCAG
*
16291912 AGAGGCAGAATACGCAAGCTGAGGATCGATTCGATCCCCCCTGTGTGCTGTGGA
131 AGAGGCAGAATACGCAAACTGAGGATCGATTCGATCCCCCCTGTGTGCTGTGGA
* * * *
16291966 TCCTGCTGCCGCAACCCTCGGTCTGGT-TCGATCTTAGATTAGGAATGAACTCCGTATGCTTAGA
1 TCCTGCTGCCGCAACCCTCAGTCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTACGCTTAGA
* * * *
16292030 C-TGGGGATGAACTTCATATGCCTAAGTCAACCCATGCAATGAA-CGTACGGGCGCTCAACCGG-
65 CAT-GGAATGAACTCCATATGCCTAAGCCAACCCATG-AATCAAGCGTACGGGCGCTCAACCGGT
* *
16292092 CTAGAGAGGCATAATACGTAAACTGAGGATC
128 C-AGAGAGGCAGAATACGCAAACTGAGGATC
16292123 AGCTTGGTTT
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
183 3 0.02
184 127 0.94
185 5 0.04
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (184 bp):
TCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTACGCTTAGAC
ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAATCAAGCGTACGGGCGCTCAACCGGTCAG
AGAGGCAGAATACGCAAACTGAGGATCGATTCGATCCCCCCTGTGTGCTGTGGA
Found at i:16292722 original size:26 final size:26
Alignment explanation
Indices: 16292682--16292732 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16292672 CGATCTGATC
16292682 TTAGAATGGGAATGAACTCCATATGG
1 TTAGAATGGGAATGAACTCCATATGG
* * *
16292708 TTAGACTGGGGATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCATATG
16292733 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCATATGG
Found at i:16293088 original size:26 final size:26
Alignment explanation
Indices: 16293051--16293128 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16293041 TGGTCCGATT
16293051 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
16293077 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
*
16293103 TTAGACATGGAATGAACTCCTTATGC
1 TTAGACATGGAATGAACTCCATATGC
16293129 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:16293290 original size:26 final size:26
Alignment explanation
Indices: 16293261--16293313 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16293251 CCGGTCTGAT
*
16293261 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16293287 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16293313 C
1 C
16293314 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16293613 original size:157 final size:157
Alignment explanation
Indices: 16293405--16293786 Score: 437
Period size: 157 Copynumber: 2.4 Consensus size: 157
16293395 TGTCCTACAA
* * *
16293405 GCTGTCGATCCTGCTGTCGCAACCGTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCTCTAT
1 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCCCTAT
* ** * *
16293470 GCCTAAGCTAACCCACAAAACGGACGTACGGGCTCTCAGTCGGTCGAAGATGCAGAATGCGAAAG
66 GCCTAAGCCAACCCACAAAACGGACGTACGGGCTCTCAACCGATCGAAGAGGCAGAATGCGAAAG
16293535 CCAGGGATCGACCCGGTCCCCCTACGT
131 CCAGGGATCGACCCGGTCCCCCTACGT
* * ** *
16293562 GCTGTCGATCTTGTTGCCGCAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCCCTAT
* * * *
16293627 GCCTAAGCCAACCCACGAAACGGGCGTACGGGCTCTCAACCGATCGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACAAAACGGACGTACGGGCTCTCAACCGATCGAAGAGGCAGAATGCGAAAG
* * * * **
16293692 CCGGGGATC-AGCCCGATCCCTCTTGCAA
131 CCAGGGATCGA-CCCGGTCCC-CCTACGT
** * * * * *
16293720 GCTACCGATCCTGCTACCGTAACCCTCGGTCTGA-TTCGATCTTAGAC-TAGGAATGAACTCCGT
1 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGACTGCG-GCTTAGACAT-GGAATGAACTCCCT
16293783 ATGC
64 ATGC
16293787 TTAGACTAGG
Statistics
Matches: 187, Mismatches: 34, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
156 1 0.01
157 132 0.71
158 54 0.29
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACAAAACGGACGTACGGGCTCTCAACCGATCGAAGAGGCAGAATGCGAAAG
CCAGGGATCGACCCGGTCCCCCTACGT
Found at i:16293796 original size:26 final size:26
Alignment explanation
Indices: 16293760--16293812 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16293750 CTGATTCGAT
16293760 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16293786 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16293812 C
1 C
16293813 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.