Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 135 of 402
Found at i:16293915 original size:184 final size:184
Alignment explanation
Indices: 16293601--16293933 Score: 411
Period size: 184 Copynumber: 1.8 Consensus size: 184
16293591 TCTGGTTGGG
* *
16293601 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * *
16293666 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTTGCAAGCTACCGATCC
66 CAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCATCCTGCAAGCTACCGATCC
* *
16293731 TGCTACCGTAACCCTCGGTCTGATTCGATCTTAGACTAGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCGGTCTGATTCGATCTTAGACTAGGAATGAACTCCGTAT
* * * * *
16293785 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * **
16293849 ATTAG-TCGGAGAGGCAGAATGCAG-AAGTCGAGGATCAGCCTGGTCCATCCTGCATGTTGTCGA
65 A-CAGATCGGAGAGGCAGAATGC-GCAAGCCGAGGATCAGCCCGATCCATCCTGCAAGCTACCGA
**
16293912 TCCTACTGTCGCAACCCTCGGT
128 TCCTACTACCGCAACCCTCGGT
16293934 TTGGCTGGGG
Statistics
Matches: 123, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
183 1 0.01
184 120 0.98
185 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCATCCTGCAAGCTACCGATCC
TACTACCGCAACCCTCGGTCTGATTCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:16294043 original size:499 final size:500
Alignment explanation
Indices: 16293101--16294043 Score: 1279
Period size: 499 Copynumber: 1.9 Consensus size: 500
16293091 AACTCCGTAT
* * * *
16293101 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGACCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGTACAGGCACTCAA
* * * * * *** **
16293166 TCGGCCAGAGAGGCAGAATGTGCAAGCCAGGGACCGACTCGATCCCCTCATGTGTGCTGTCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCGATCCCCTCATGCAAGCTACCGATC
* * *
16293231 CTACTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
131 CTACTACCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTA
* * * *
16293296 GGGATAAACTCCGTATGCCTAAGTTAACCCATGAAACGACTGTGCGGGTGCTAAATCGATCGGAG
196 GGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGACTGTGCGGGCGCTAAATAGATCGGAG
* * * ** *
16293361 AGATAGAATGTGAAAGTCGAGGATCGGCCTGATCTGTCCTACAAGCTGTCGATCCTGCTGTCGCA
261 AGACAGAATGAGAAAGTCGAGGATCAGCCTGATCCATCCTACAAGCTGTCGATCCTACTGTCGCA
* *
16293426 ACCGTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCTAACCCACAAAAC
326 ACCCTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACAAAAC
16293491 GGACGTACGGGCTCTCAGTCGGTCGAAGATGCAGAATGCGAAAGCCAGGGATCGACCCGGTCCCC
391 GGACGTACGGGCTCTCAGTCGGTCGAAGATGCAGAATGCGAAAGCCAGGGATCGACCCGGTCCCC
16293556 CTACGTGCTGTCGATCTTGTTGCCGCAACCCTCGGTCTGGTTGGG
456 CTACGTGCTGTCGATCTTGTTGCCGCAACCCTCGGTCTGGTTGGG
** * *
16293601 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGTACAGGCACTCAA
* * * *
16293666 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGAT-CCCTCTTGCAAGCTACCGAT
66 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGA-CAGACCCGATCCCCTCATGCAAGCTACCGAT
* * * *
16293729 CCTGCTACCGTAACCCTCGGTCTGAT-TCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
130 CCTACTACCGTAACCCTCGATCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* *
16293793 TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTGAATTAG-TC
194 TAGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGA-CTGTGCGGGCGCT-AAATAGATC
* * * * *
16293856 GGAGAGGCAGAATGCAG-AAGTCGAGGATCAGCCTGGTCCATCCTGCATGTTGTCGATCCTACTG
257 GGAGAGACAGAATG-AGAAAGTCGAGGATCAGCCTGATCCATCCTACAAGCTGTCGATCCTACTG
* * * *
16293920 TCGCAACCCTCGGTTTGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCAT
321 TCGCAACCCTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCAC
* * * *
16293985 GAAACGGGCGTGCGGGCTCTCAGTCGGTCGAAGATGCAGAATGC-ACAAGCCGGGGATCG
386 AAAACGGACGTACGGGCTCTCAGTCGGTCGAAGATGCAGAATGCGA-AAGCCAGGGATCG
16294044 GCTCGATCCC
Statistics
Matches: 381, Mismatches: 56, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
498 2 0.01
499 282 0.74
500 95 0.25
501 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (500 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGTACAGGCACTCAA
CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGACAGACCCGATCCCCTCATGCAAGCTACCGATC
CTACTACCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTA
GGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGACTGTGCGGGCGCTAAATAGATCGGAG
AGACAGAATGAGAAAGTCGAGGATCAGCCTGATCCATCCTACAAGCTGTCGATCCTACTGTCGCA
ACCCTCGGTCTGACTGCGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACAAAAC
GGACGTACGGGCTCTCAGTCGGTCGAAGATGCAGAATGCGAAAGCCAGGGATCGACCCGGTCCCC
CTACGTGCTGTCGATCTTGTTGCCGCAACCCTCGGTCTGGTTGGG
Found at i:16294144 original size:26 final size:26
Alignment explanation
Indices: 16294103--16294155 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16294093 CCTGTTCGAT
*
16294103 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16294129 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
16294155 C
1 C
16294156 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16294455 original size:196 final size:196
Alignment explanation
Indices: 16294100--16294571 Score: 474
Period size: 196 Copynumber: 2.5 Consensus size: 196
16294090 GATCCTGTTC
* * * * *
16294100 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGAATGAAATCCATATGCCTAAGCCAA
* * * * * *
16294165 CCCACGAAAGGAGCGTGCATGCGCTCAGTCGACCGAAGAGGCAGATGCGCAAGTCGGGGATCGAC
66 CCCACGAAACGAGAGTACAGGCGCTCAGTCGACCGAAGAAGCAGATGCGCAAGTCGAGGATCGAC
*
16294230 CTGATCCCTCCCTGCTTGCTGTAGATCCTGCTACTTGTCCTACTGCTGCAAACTTTGATCCGATC
131 CTGATCCCTCCCTGCGTGCTGTAGATCCTGCTACTTGTCCTACTGCTGCAAACTTTGATCCGATC
16294295 T
196 T
* **
16294296 GATCTTAGACTAGGAGTGAACTCCGTATGCTTAAAC-ATGGAATGAAATCTGTATGCCTAAGCCA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTA-GGAATGAAATCCATATGCCTAAGCCA
* * * * *
16294360 ACCCACGAATCGAGAGTACGGGCGCTCAGTCGGCCGGAGAAGCAGAATGTGCAAG-CTGAGGATC
65 ACCCACGAAACGAGAGTACAGGCGCTCAGTCGACCGAAGAAGCAG-ATGCGCAAGTC-GAGGATC
* * * * *
16294424 GGTCC-GATCCC-CCCTGCGTGCTGTCGATCCTG---C-TGT-C-A------CAACCCTCGATCC
128 -GACCTGATCCCTCCCTGCGTGCTGTAGATCCTGCTACTTGTCCTACTGCTGCAAACTTTGATCC
*
16294475 GGTCT
192 GATCT
* * * * * *
16294480 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGAATGAAATCCATATGCCTAAGCCAA
* *
16294545 CCCACGAAATGA-ACGTACGGGCGCTCA
66 CCCACGAAACGAGA-GTACAGGCGCTCA
16294572 ACCGGCCAGA
Statistics
Matches: 233, Mismatches: 37, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
183 1 0.00
184 92 0.39
190 1 0.00
191 1 0.00
192 3 0.01
193 1 0.00
195 1 0.00
196 110 0.47
197 20 0.09
198 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.23
Consensus pattern (196 bp):
GATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGAATGAAATCCATATGCCTAAGCCAA
CCCACGAAACGAGAGTACAGGCGCTCAGTCGACCGAAGAAGCAGATGCGCAAGTCGAGGATCGAC
CTGATCCCTCCCTGCGTGCTGTAGATCCTGCTACTTGTCCTACTGCTGCAAACTTTGATCCGATC
T
Found at i:16294534 original size:26 final size:26
Alignment explanation
Indices: 16294483--16294535 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16294473 CCGGTCTGAT
**
16294483 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16294509 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16294535 C
1 C
16294536 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16295939 original size:990 final size:992
Alignment explanation
Indices: 16294552--16296425 Score: 3263
Period size: 990 Copynumber: 1.9 Consensus size: 992
16294542 CAACCCACGA
*
16294552 AATGAACGTACGGGCGCTCAACCGGCCAGAGAGGCATAATACGCAAGCTGAGGATCAGCCCGGTC
1 AATGAACGTACGGGCGCTCAACCGGCCAGAGAGGCATAATACGCAAGCTGAGGATCAGCCCGATC
* *
16294617 CCCCTTTGCACGCTGCCGTTCTCGCTGTCGGTCCTGCTACCACAACCTTCGGTTTGACTGGGGCT
66 CCCCTTTGCACGCTACCGTTCTCACTGTCGGTCCTGCTACCACAACCTTCGGTTTGACTGGGGCT
16294682 TAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGCGGGAGCTCAACCG
131 TAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGCGGGAGCTCAACCG
16294747 ACCAGAGAGGTAGAATGCGTAAGTCAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTAC
196 ACCAGAGAGGTAGAATGCGTAAGTCAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTAC
*
16294812 TGCTGGTCCTGTTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
261 TGCTGGTCCTGTTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
* *
16294877 CTAAGTCAACCCATGAAACGAGCGTGCTGGTGCTGAGTCGACCGGAGAGGAATAATGCGCAAGCC
326 CTAAGTCAACCCACGAAACGAGCGTGCTGGTGCTGAGCCGACCGGAGAGGAATAATGCGCAAGCC
* *
16294942 AGGGATAGGCCTGATCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCAGT-CTGACTG
391 AGGGATAGGCCCGATCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAG-CTG
16295006 GGGCTTAGACATGAAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCTCAA
455 GGGCTTAGACATGAAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCTCAA
16295071 CCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
520 CCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
** * *
16295136 TACTGTCACAACCCTCTATATGGTTTGATCTTAGAATGGGAATGAACTCCATATGGTTAGACTGG
585 TACTGTCACAACCCTCTATACAGTCTGATCTTAGAATAGGAATGAACTCCATATGGTTAGACTGG
* * *
16295201 AGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTTGATCGGAGA
650 AGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCTGACCGGAGA
*
16295266 GGCATAATGCGCAAGCTGGGGATAAGCCCGGTCCACTTCTACGTGCTACCGATCCTGCTGCCGCA
715 GGCATAATGCGCAAGCTGGGGATAAGCCCGGTCCACCTCTACGTGCTACCGATCCTGCTGCCGCA
* *
16295331 ACCCCTGGTCCGGTCTGATCTTAGACTAAGAATGAACTC-GTATGCTTAGACTGGGATGAACTCC
780 ACCCCTGGTCCGGTCCGATCTTAGACTAAGAATGAACTCTGTATGCTTAGACTAGGATGAACTCC
*
16295395 GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAATCAGTCGGAGAGGTAGAATGTA
845 GTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTGAATCAGTCGGAGAGGTAGAATGTA
16295460 GAAGTCGAGGATCAGCCCGGTCCGCCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGGTTCG
910 GAAGTCGAGGATCAGCCCGGTCCGCCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGGTTCG
16295525 GCTGGGGCTTAGACATGG
975 GCTGGGGCTTAGACATGG
* *
16295543 AATGAACGTAC-GGCGCTCAACCGGCCAGAGAGGCATAATACGCAAG-TCGGGGATC-GACCTGA
1 AATGAACGTACGGGCGCTCAACCGGCCAGAGAGGCATAATACGCAAGCT-GAGGATCAG-CCCGA
16295605 TCCCCCTTTGCACGCTACCGTTCTCACTGTCGGTCCTGCTACCACAACCTTCGGTTTGACTGGGG
64 TCCCCCTTTGCACGCTACCGTTCTCACTGTCGGTCCTGCTACCACAACCTTCGGTTTGACTGGGG
16295670 CTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGCGGGAGCTCAAC
129 CTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGCGGGAGCTCAAC
16295735 CGACCAGAGAGGTAGAATGCGTAAGTCAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCT
194 CGACCAGAGAGGTAGAATGCGTAAGTCAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCT
16295800 ACTGCTGGTCCTGTTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
259 ACTGCTGGTCCTGTTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
* * *
16295865 GCCTAAGTCAACCCACGAAATGAGCGTGCTGGTGCTGAGCCGATCGGAGAGGAATAATGCGTAAG
324 GCCTAAGTCAACCCACGAAACGAGCGTGCTGGTGCTGAGCCGACCGGAGAGGAATAATGCGCAAG
* * * *
16295930 CCAGGGATAGGCCCGATCCCTCTTTGTGTGCTGTCGGTCCCGCTGTCACAACCCTCAGTCCAGCT
389 CCAGGGATAGGCCCGATCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCT
16295995 GGGGCTTAGACATGAAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCTCA
454 GGGGCTTAGACATGAAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCTCA
** *
16296060 ACCGGTCGAAGAGGCAGAATTTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATC
519 ACCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATC
* * * *
16296125 CTACTGTCACAACCTTCTGTACAGTCTGATCTTAGAATAGGAATGAACTTCGTATGGTTAGACTG
584 CTACTGTCACAACCCTCTATACAGTCTGATCTTAGAATAGGAATGAACTCCATATGGTTAGACTG
* * * * *
16296190 GGGATGGACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCTGACCGGAG
649 GAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCTGACCGGAG
* * **
16296255 AGGCATAATGTGCAAGCTGGGGATAAGCCCGGTCCACCTCTGCGTGCTACCGATCCTGCTGTGGC
714 AGGCATAATGCGCAAGCTGGGGATAAGCCCGGTCCACCTCTACGTGCTACCGATCCTGCTGCCGC
*
16296320 AACCCCTGGTCCGGTCCGATCTTAGACTTAGAATGAACTCTGTATGCTTAGACTAGGATGAACTC
779 AACCCCTGGTCCGGTCCGATCTTAGACTAAGAATGAACTCTGTATGCTTAGACTAGGATGAACTC
* *
16296385 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCT
844 CGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCT
16296426 CAACCGGCCA
Statistics
Matches: 832, Mismatches: 47, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
989 2 0.00
990 756 0.91
991 74 0.09
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (992 bp):
AATGAACGTACGGGCGCTCAACCGGCCAGAGAGGCATAATACGCAAGCTGAGGATCAGCCCGATC
CCCCTTTGCACGCTACCGTTCTCACTGTCGGTCCTGCTACCACAACCTTCGGTTTGACTGGGGCT
TAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGCGGGAGCTCAACCG
ACCAGAGAGGTAGAATGCGTAAGTCAGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTAC
TGCTGGTCCTGTTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCTGGTGCTGAGCCGACCGGAGAGGAATAATGCGCAAGCC
AGGGATAGGCCCGATCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGG
GGCTTAGACATGAAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCTCAAC
CGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCT
ACTGTCACAACCCTCTATACAGTCTGATCTTAGAATAGGAATGAACTCCATATGGTTAGACTGGA
GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCTGACCGGAGAG
GCATAATGCGCAAGCTGGGGATAAGCCCGGTCCACCTCTACGTGCTACCGATCCTGCTGCCGCAA
CCCCTGGTCCGGTCCGATCTTAGACTAAGAATGAACTCTGTATGCTTAGACTAGGATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTGAATCAGTCGGAGAGGTAGAATGTAG
AAGTCGAGGATCAGCCCGGTCCGCCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGGTTCGG
CTGGGGCTTAGACATGG
Found at i:16296384 original size:25 final size:26
Alignment explanation
Indices: 16296340--16296391 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16296330 CCGGTCCGAT
*
16296340 CTTAGACTTAGAATGAACTCTGTATG
1 CTTAGACTTAGAATGAACTCCGTATG
*
16296366 CTTAGAC-TAGGATGAACTCCGTATG
1 CTTAGACTTAGAATGAACTCCGTATG
16296391 C
1 C
16296392 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTTAGAATGAACTCCGTATG
Found at i:16296442 original size:184 final size:182
Alignment explanation
Indices: 16296014--16296500 Score: 493
Period size: 184 Copynumber: 2.6 Consensus size: 182
16296004 ACATGAAATA
* * * *
16296014 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTAC-GGGCTCAACCGGTCGAAGAGGCAGA
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGGCTCAACCGGCCG-AGAGGCAGA
* * ** *
16296078 ATTTGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTACTGTCACAACCTTCT
65 ATGTGCAAGCCGGGGATAGACCCAGTCCCCCCTGCGTGCTACCGATCCTACTGTCACAACCTCCT
* * *
16296143 GTACAGTCTGATCTTAGAATAGGAATGAACTTCGTATGGTTAGACTGGGGATG
130 GTACAGTCCGATCTTAGAATAGGAATGAACTTCGTATGCTTAGACTGAGGATG
* * * * * * *
16296196 GACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCTGACCGGAGAGGCAT
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGG-GCTCAACCGGCC-GAGAGGCAG
* * * * **
16296261 AATGTGCAAGCTGGGGATA-AGCCCGGTCCACCTCTGCGTGCTACCGATCCTGCTGTGGCAACC-
64 AATGTGCAAGCCGGGGATAGA-CCCAGTCC-CCCCTGCGTGCTACCGATCCTACTGTCACAACCT
* * *
16296324 CCTGGTCCGGTCCGATCTTAGACTTA-GAATGAAC-TCTGTATGCTTAGACT-AGGATG
127 CCT-GTACAGTCCGATCTTAGA-ATAGGAATGAACTTC-GTATGCTTAGACTGAGGATG
* *
16296380 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAG
1 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGG-GCTCAACCGGCC-GAGAGGCAG
* * * ** *
16296445 AATGCGCAAGCCAGGGATTGACCC-GATCCTTTCCTGCGTGCTGCCGATCCTACTGT
64 AATGTGCAAGCCGGGGATAGACCCAG-TCC-CCCCTGCGTGCTACCGATCCTACTGT
16296501 TGGCCCTGCT
Statistics
Matches: 246, Mismatches: 49, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
182 33 0.13
183 4 0.02
184 143 0.58
185 64 0.26
186 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (182 bp):
AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGGCTCAACCGGCCGAGAGGCAGAA
TGTGCAAGCCGGGGATAGACCCAGTCCCCCCTGCGTGCTACCGATCCTACTGTCACAACCTCCTG
TACAGTCCGATCTTAGAATAGGAATGAACTTCGTATGCTTAGACTGAGGATG
Found at i:16296565 original size:26 final size:26
Alignment explanation
Indices: 16296536--16296588 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16296526 CTGGTCCGAT
*
16296536 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCAGTATG
16296562 CTTAGACATGGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
16296588 C
1 C
16296589 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:16296667 original size:197 final size:196
Alignment explanation
Indices: 16296332--16296692 Score: 492
Period size: 197 Copynumber: 1.8 Consensus size: 196
16296322 CCCCTGGTCC
* * *
16296332 GGTCCGATCTTAGACTTAGAATGAACTCTGTATGCTTAGACTAGGATGAACTCCGTATGCCTAAG
1 GGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGATGAACTCAGTATGCCTAAG
* ** *
16296397 TCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGA
66 CCAACCCAAAAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGAGCAAGCCAGGGA
* *
16296462 TTGACCCGAT-CCTTTCCTGCGTGCTGCCGATCCTACTGTTGGCCCTGCTATCGTAACCCTCAGT
131 TCGACCCGATCCCTTT-CTACGTGCTGCCGATCCTACTGTTGGCCCTGCTATCGTAACCCTCAGT
16296526 CT
195 CT
*
16296528 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCAGTATGCCTA
1 GGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTA-GG-ATGAACTCAGTATGCCTA
* * * * ** * *
16296592 AGCCAACCTAAAAAATGATCGTGCGGGCGCTCAGTCGGCCAGAGAGGTAGAATGAGCAAGCCGGG
64 AGCCAACCCAAAAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGAGCAAGCCAGG
* * *
16296657 GGTCGACCCGATCCCTTTCTATGTGCTGTCGATCCT
129 GATCGACCCGATCCCTTTCTACGTGCTGCCGATCCT
16296693 GTTACCGCAA
Statistics
Matches: 141, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
195 1 0.01
196 40 0.28
197 95 0.67
198 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (196 bp):
GGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGATGAACTCAGTATGCCTAAG
CCAACCCAAAAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGAGCAAGCCAGGGA
TCGACCCGATCCCTTTCTACGTGCTGCCGATCCTACTGTTGGCCCTGCTATCGTAACCCTCAGTC
T
Found at i:16297035 original size:26 final size:26
Alignment explanation
Indices: 16296994--16297072 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
16296984 CCGATTTGAT
16296994 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
16297020 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
16297046 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
16297072 C
1 C
16297073 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 49 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:16297431 original size:26 final size:26
Alignment explanation
Indices: 16297402--16297452 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16297392 CGGTCTAATC
16297402 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
16297428 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16297453 CTTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:16297912 original size:184 final size:184
Alignment explanation
Indices: 16297597--16298069 Score: 508
Period size: 184 Copynumber: 2.6 Consensus size: 184
16297587 TCCGACTGGG
* * * * * *
16297597 GCTTCGACATGGAATGAACTCCATATGCCTAAGTCGACCTACTAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATACCTAAGGCAACCCACTAAACGAGCGTGCGGGTGCTCAA
* ** *
16297662 TCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATTGGCCCGATCCCTCCTGCGTGCTACCGATCC
66 CCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCCTGCATGCTACCGATCC
*
16297727 TGCTG-CTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCACAT
131 TGCTGTC-GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCACAT
* *
16297781 GCTTAGACATGGAATGAACTTCGTATACCTAAGGCAACCCA-TGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATACCTAAGGCAACCCACT-AAACGAGCGTGCGGGTGCTCA
* * * * * * * **
16297845 GCCGGTCGGAGAGGTAGAATGCGCAAGTCGAA-GATCAGTCCGATTCCCT-CTGCATGCTGTCGA
65 ACCGGCCAGAAAGGCAGAATGCGCAAG-CCAAGGATCAGCCCGA-TCCCTCCTGCATGCTACCGA
* *
16297908 TCCTGCTGTCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
128 TCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCACAT
* * ** * * * * *
16297965 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTTAACCCACGAAATGAACGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATACCTAAGGCAACCCACTAAACGAGCGTGCGGGTGCTCA
* * * * *
16298029 ACAGGCC-GAAGAGGCATAATGCGTAAGCCGAGGATAAGCCC
65 ACCGGCCAGAA-AGGCAGAATGCGCAAGCCAAGGATCAGCCC
16298070 AGTCCCCCTC
Statistics
Matches: 235, Mismatches: 46, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
183 6 0.03
184 220 0.94
185 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGGCAACCCACTAAACGAGCGTGCGGGTGCTCAA
CCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCCTGCATGCTACCGATCC
TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCACAT
Found at i:16297976 original size:26 final size:26
Alignment explanation
Indices: 16297940--16297992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16297930 CCGATCCGAT
16297940 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16297966 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16297992 C
1 C
16297993 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16298217 original size:539 final size:539
Alignment explanation
Indices: 16297185--16298234 Score: 1305
Period size: 539 Copynumber: 1.9 Consensus size: 539
16297175 CTGTTGCTGG
* ** ****
16297185 TCCTGCTGCCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAGTTTTGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGAC
*
16297250 ATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAACCGACTGA
66 ATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAACCGACTGA
** * *
16297315 AAAGGCAAAATACGCAAGACGGGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCTACTACCG
131 AAAGGCAAAATACGCAAGACGAAGATCAGTCCGATCCCCCCTGCATGCTATCGATCCTACTACCG
* * * * *
16297380 TAACCTTCAATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGGATGAAC
196 TAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
* * * * * *
16297445 TCCGTATGCTTAAGTCAACGCACGAAATGAACGTACGGGTGCTCAATCGGCCGGAGAGGTATAAT
261 TCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAATCGGCCGAAGAGGCATAAT
* ** * * * *
16297510 GCGCAAGCCGAGGATCAGCCTGGTCCCCCTCTGCGTGCTACCGTTCTCGCTGCCGGTCTTGCTAC
326 GCGCAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTACTACCATTCTCGCTGCCGGTCCTACTAC
* * * * *
16297575 CACAACCCTCGGTCCGACTGGGGCTTCGACATGGAATGAACTCCATATGCCTAAGTCGACCTACT
391 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCTACA
* * **
16297640 AAATGAGCGTGCGGGTGCTCAATCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGATTGGCCCGAT
456 AAACGAGCGTGCGGGTGCTCAACCAACCAGAAAGGCAGAATGCGCAAGCCAAGGATTGGCCCGAT
16297705 CCCTCCTGCGTGCTACCGA
521 CCCTCCTGCGTGCTACCGA
** * *
16297724 TCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGAC
1 TCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGAC
* * * * * * * *
16297789 ATGGAATGAACTTCGTATACCTAAGGCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG-GTCG
66 ATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAACCGACT-G
* * * * * * * * * * **
16297853 GAGAGGTAGAATGCGCAAGTCGAAGATCAGTCCGATTCCCTCTGCATGCTGTCGATCCTGCTGTC
130 AAAAGGCAAAATACGCAAGACGAAGATCAGTCCGATCCCCCCTGCATGCTATCGATCCTACTACC
** *
16297918 GTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
195 GTAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
*
16297983 CTCCATATGCCTAAGTTAACCCACGAAATGAACGTACGGGCGCTCAA-CAGGCCGAAGAGGCATA
260 CTCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAATC-GGCCGAAGAGGCATA
* ** *
16298047 ATGCGTAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTACTGTCATTCTCGTTGCCGGTCCTACT
324 ATGCGCAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTACTACCATTCTCGCTGCCGGTCCTACT
* * *
16298112 GCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCC-
389 ACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA-CCT
* * * * * * * * *
16298176 ACAAAACGAGTGTGTGGGTGCTCAGCCAATCGGAGAGGCAGAATGTGTAAGCCGAGGAT
453 ACAAAACGAGCGTGCGGGTGCTCAACCAACCAGAAAGGCAGAATGCGCAAGCCAAGGAT
16298235 CAACCAGGTC
Statistics
Matches: 425, Mismatches: 83, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
538 2 0.00
539 421 0.99
540 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (539 bp):
TCCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGAC
ATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAACCGACTGA
AAAGGCAAAATACGCAAGACGAAGATCAGTCCGATCCCCCCTGCATGCTATCGATCCTACTACCG
TAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
TCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAATCGGCCGAAGAGGCATAAT
GCGCAAGCCGAGGATAAGCCCAGTCCCCCTCTGCGTACTACCATTCTCGCTGCCGGTCCTACTAC
CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCTACA
AAACGAGCGTGCGGGTGCTCAACCAACCAGAAAGGCAGAATGCGCAAGCCAAGGATTGGCCCGAT
CCCTCCTGCGTGCTACCGA
Found at i:16298858 original size:26 final size:26
Alignment explanation
Indices: 16298817--16298869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16298807 CCGGTCCGAT
16298817 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
16298843 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
16298869 C
1 C
16298870 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:16298982 original size:12 final size:12
Alignment explanation
Indices: 16298961--16298990 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16298951 CCTTCCTGCA
16298961 TGCTGCCGATCC
1 TGCTGCCGATCC
*
16298973 TGCTGTCGATCC
1 TGCTGCCGATCC
16298985 TGCTGC
1 TGCTGC
16298991 TGGTCCTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.37, G:0.27, T:0.30
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:16299257 original size:25 final size:26
Alignment explanation
Indices: 16299211--16299262 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16299201 CCGGTTCGAT
16299211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16299237 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16299262 C
1 C
16299263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16299581 original size:26 final size:26
Alignment explanation
Indices: 16299552--16299604 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16299542 CTGGTTTGAT
*
16299552 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16299578 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16299604 C
1 C
16299605 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16300496 original size:26 final size:26
Alignment explanation
Indices: 16300458--16300510 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16300448 GGCTCAAAAT
16300458 CTTAGACTAGGAATAAAC-TCTGTATG
1 CTTAGACTAGGAATAAACTTC-GTATG
*
16300484 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATAAACTTCGTATG
16300510 C
1 C
16300511 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.88
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTTCGTATG
Found at i:16300987 original size:26 final size:26
Alignment explanation
Indices: 16300958--16301008 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16300948 CTGGTCTGAT
*
16300958 CTTAGTCTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCTGTATC
*
16300984 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
16301009 GCCTATGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATC
Found at i:16301376 original size:26 final size:26
Alignment explanation
Indices: 16301325--16301377 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16301315 CTGGTCCGAT
*
16301325 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16301351 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCCATATG
16301377 C
1 C
16301378 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16302403 original size:26 final size:26
Alignment explanation
Indices: 16302352--16302404 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16302342 CCGGTTCGAT
*
16302352 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
16302378 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16302404 C
1 C
16302405 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16303214 original size:158 final size:158
Alignment explanation
Indices: 16302905--16303354 Score: 424
Period size: 158 Copynumber: 2.8 Consensus size: 158
16302895 TTAGACGTGC
* * * * *
16302905 AATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGTGTGCGGGCGCTCAACCGGCCAAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAG
* * * * * * *
16302970 GCAGAATGGGCAAGCTGGGGATCGGCCCGATCCCCC-CTACGTGCTATTGATCCTGCTGTCATAA
66 GCATAATGCGCAAGC-GGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAA
** * *
16303034 CCCTCGGTCCGGTTCAATCTTAG-TATGGG
130 CCCTCAATCCGGCTCAAGCTTAGATAT-GG
* * * * * * *
16303063 AATGAACTCTGTATGCATAAGTCAACCCACAAAACGCGCGTCCGGGCGCTGAGCTGGCCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAG
* *
16303128 GCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA
66 GCATAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAA
* **
16303193 CCCTCAAT-TGGCTGGAGCTTAGATATGG
130 CCCTCAATCCGGCTCAAGCTTAGATATGG
* * * * * * * *
16303221 AATGAACTCCCTATGCCTAAGCCAACTCACCAAATGGGCGTGCAGGCGCTCAGCCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAG
* ** * * * * *
16303286 GTAGT-ATGCGCAAGCCGGGGATCATCTCGGT-CCCCTCTGCGTGCTGCCGATCCTGCTACCGCA
66 GCA-TAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACA
16303349 ACCCTC
129 ACCCTC
16303355 GGTCCAGTCT
Statistics
Matches: 235, Mismatches: 53, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 33 0.14
158 170 0.72
159 32 0.14
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAG
GCATAATGCGCAAGCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAAC
CCTCAATCCGGCTCAAGCTTAGATATGG
Found at i:16303409 original size:26 final size:26
Alignment explanation
Indices: 16303368--16303418 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16303358 CCAGTCTGAT
* *
16303368 CTTAGACTGGGAATGAACTTCGTATC
1 CTTAGACCGGGAATGAACTCCGTATC
*
16303394 CTTAGACCGGGGATGAACTCCGTAT
1 CTTAGACCGGGAATGAACTCCGTAT
16303419 GCCTAAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATC
Found at i:16305301 original size:26 final size:26
Alignment explanation
Indices: 16305265--16305317 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16305255 CTGGTCCAAA
16305265 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
16305291 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16305317 C
1 C
16305318 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16306026 original size:26 final size:26
Alignment explanation
Indices: 16305988--16306040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16305978 GGCTCAAAAT
*
16305988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16306014 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
16306040 C
1 C
16306041 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16306465 original size:158 final size:157
Alignment explanation
Indices: 16306013--16306515 Score: 464
Period size: 158 Copynumber: 3.2 Consensus size: 157
16306003 AACTCCGTAT
* *
16306013 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
16306078 CCGATCGGAGAGGCAGATTGCGTAAGTCAGAGATCGGCCCGATCCCCCCCTACGTGCTGTCAATC
66 CCGATCGAAGAGGCAGAATGCGTAAGCCAGAGATCGGCCTGAT-CCCCCCTACGTGCT-TCAATC
* * *** *
16306143 CTGCTACTGTAACCCTCAGTCCGTTCTGA
129 TTGCTGCCACAACCCTCAGTCCGTGCTGA
* * * * * * *
16306172 TCTTAGAC-TAAGAATGAACTTCGTATGCGTAAGTCAACCCACGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
16306236 GCCGATCGAAAAGGCATAATGC-AAAACC-GACGATCGGCCCTG-TCCCCCTCTACGTGCTGCCA
65 GCCGATCGAAGAGGCAGAATGCGTAAGCCAGA-GATCGG-CCTGATCCCCC-CTACGTGCT-TCA
* * * * *
16306298 GTCTCGCTGCCACATCCCTCGGTCCG-GCTGGG
126 ATCTTGCTGCCACAACCCTCAGTCCGTGCT-GA
* *** *
16306330 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
16306395 CCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATCTGCCTGATCCCTCCTACGTGCTATCGATCT
66 CCGATCGAAGAGGCAGAATGCGTAAGCCAGAGATCGGCCTGATCCCCCCTACGTGCT-TCAATCT
* *
16306460 TGCTGCCGCAACCCT-ATGTTCG-GTCTGA
130 TGCTGCCACAACCCTCA-GTCCGTG-CTGA
* *
16306488 TCTTGGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16306516 TTAGACATGG
Statistics
Matches: 272, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.04
158 170 0.62
159 91 0.33
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGTAAGCCAGAGATCGGCCTGATCCCCCCTACGTGCTTCAATCTT
GCTGCCACAACCCTCAGTCCGTGCTGA
Found at i:16306657 original size:184 final size:184
Alignment explanation
Indices: 16306330--16306691 Score: 492
Period size: 184 Copynumber: 2.0 Consensus size: 184
16306320 TCCGGCTGGG
** * * **
16306330 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCAGGCACTCAG
* ** * * * *
16306395 CCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATCTGCCTGATCCCTCCTACGTGCTATCGATCT
66 CCGACCGAAGAGGCAGAATGCACAAGCCAGGAATCTGACTGATCCCCCCTACGTGCTATCGATCC
* * * *
16306460 TGCTGCCGCAACCCTATGTTCGGTCTGATCTTGGACTGGGAATGAACTCCGTAT
131 TGCTACCGCAACCCTAGGTCCGATCTGATCTTGGACTGGGAATGAACTCCGTAT
*
16306514 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCAGGCACTCAG
* * * *
16306579 TCGACCGGAGAGGCAGAATGCACAAGCCAGGAATC-GACTCGATCCCCCCTGCGTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCACAAGCCAGGAATCTGACT-GATCCCCCCTACGTGCTATCGATC
* *
16306643 CTGCTACTGCAACCCTCGGTCCGATCTGATCTTGGACTGGGAATGAACT
130 CTGCTACCGCAACCCTAGGTCCGATCTGATCTTGGACTGGGAATGAACT
16306692 TTGTATGCCT
Statistics
Matches: 153, Mismatches: 24, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
183 3 0.02
184 150 0.98
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCAGGCACTCAG
CCGACCGAAGAGGCAGAATGCACAAGCCAGGAATCTGACTGATCCCCCCTACGTGCTATCGATCC
TGCTACCGCAACCCTAGGTCCGATCTGATCTTGGACTGGGAATGAACTCCGTAT
Found at i:16306814 original size:158 final size:158
Alignment explanation
Indices: 16306524--16307015 Score: 418
Period size: 158 Copynumber: 3.1 Consensus size: 158
16306514 GCTTAGACAT
* *
16306524 GGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAG
* **
16306589 AGGCAGAATGCACAAGCCAGGAATCGACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTGCA
66 AGGCAGAATGCACAAGCCAGGAATCGACTCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCACA
16306654 ACCCTCGGTCCGATCTGATCTTGGACTG
131 ACCCTCGGTCCGATCTGATCTTGGACTG
** * ** * ** * *
16306682 GGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACTAGCGTG-GGGTGCTGAGCCGACTGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAG
* ** * * ** * *
16306746 AGGCATAATGCGTAAGCCGGGGATCGGGTCGGTCCCCCTCTGCGTGCTGCC-AGTCCTGCTGCCA
66 AGGCAGAATGCACAAGCCAGGAATCGACTCGATCCCCC-CTGCGTGCTGCCGA-TCCTGCTACCA
** *
16306810 CAACCCTCGGTCCGAT-TGGGGCTTAGACAT-
129 CAACCCTCGGTCCGATCT-GATCTTGGAC-TG
* * ** * * * * * * * *
16306840 GAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGACGCTCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAG
* * * * * * ** *
16306905 AGGCAGAATGCGCAAGACGAGG-ATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTGCTGTCGC
66 AGGCAGAATGCACAAG-CCAGGAATCGACTCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCAC
* * * * *
16306969 AACCCTTGGTCTGGTCCGATCTTAGACTG
130 AACCCTCGGTCCGATCTGATCTTGGACTG
*
16306998 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
16307016 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 63, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 47 0.18
158 169 0.65
159 43 0.16
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAG
AGGCAGAATGCACAAGCCAGGAATCGACTCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCACA
ACCCTCGGTCCGATCTGATCTTGGACTG
Found at i:16306972 original size:500 final size:500
Alignment explanation
Indices: 16305986--16307092 Score: 1460
Period size: 500 Copynumber: 2.2 Consensus size: 500
16305976 GTGGCTCAAA
*
16305986 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-
* * * ** * *
16306051 CCATGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGATTGCGTAAGTCAGAGATCGGC
65 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGAGATCGAC
* *
16306116 CCGATCCCCCCCTACGTGCTGTCAATCCTGCTACTGTAACCCTCAGTCCGTTCTGATCTTAGACT
130 CCGATCCCCCCCTACGTGCTGTCAATCCTGCTACTGCAACCCTCAGTCCGATCTGATCTTAGACT
*
16306181 AAGAATGAACTTCGTATGCGTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCGATCGAA
195 AAGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCGATCGAA
*
16306246 AAGGCATAATGCAAAACCGACGATCGGCCCTGTCCCCCTCTACGTGCTGCCAGTCTCGCTGCCAC
260 AAGGCATAATGCAAAACCGACGATCGGCCCGGTCCCCCTCTACGTGCTGCCAGTCTCGCTGCCAC
* * * *
16306311 ATCCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
325 AACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * *
16306376 CGAGTGTGTAGGTGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATCTGCCTGATCCC
390 CGAGTGTGTAGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCC
* * * * *
16306441 TCCTACGTGCTATCGATCTTGCTGCCGCAACCCTATGTTC-GGTCTG
455 CCCTACATGCTATCGATCCTGCTGCCGCAACCCT-TGGTCTGGTCCG
*
16306487 ATCTTGGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
16306552 AAACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCACAAGCCAG-GAATCGA
66 -CATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGAG-ATCGA
* * * * *
16306616 CTCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGGTCCGATCTGATCTTGGAC
129 CCCGATCCCCCCCTACGTGCTGTCAATCCTGCTACTGCAACCCTCAGTCCGATCTGATCTTAGAC
** * * * **
16306680 TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACTAGCGT-GGGGTGCTGAGCCGA-CTG
194 TAAGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCGATC-G
* * * ** ** *
16306743 AAGAGGCATAATGCGTAAGCCGGGGATCGGGTCGGTCCCCCTCTGCGTGCTGCCAGTC-CTGCTG
258 AAAAGGCATAATGC-AAAACCGACGATCGGCCCGGTCCCCCTCTACGTGCTGCCAGTCTC-GCTG
* *
16306807 CCACAACCCTCGGTCCGATTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCAT
321 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
16306872 GAAACG-G-GTGTACGGACGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGAC-GAGGATCGGCC
386 GAAACGAGTGTGTA-GG-CGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCC
* * *
16306934 CGATCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTTGGTCTGGTCCG
448 CGATCCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCG
* * * *
16306987 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* *
16307051 CCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGAGGCA
65 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA
16307093 AGATGCGCAA
Statistics
Matches: 526, Mismatches: 70, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
498 6 0.01
499 71 0.13
500 332 0.63
501 117 0.22
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (500 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGAGATCGACC
CGATCCCCCCCTACGTGCTGTCAATCCTGCTACTGCAACCCTCAGTCCGATCTGATCTTAGACTA
AGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCGATCGAAA
AGGCATAATGCAAAACCGACGATCGGCCCGGTCCCCCTCTACGTGCTGCCAGTCTCGCTGCCACA
ACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GAGTGTGTAGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCC
CCTACATGCTATCGATCCTGCTGCCGCAACCCTTGGTCTGGTCCG
Found at i:16307040 original size:26 final size:26
Alignment explanation
Indices: 16306989--16307041 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16306979 CTGGTCCGAT
**
16306989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16307015 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16307041 C
1 C
16307042 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16307330 original size:26 final size:27
Alignment explanation
Indices: 16307292--16307345 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
16307282 GGCTCAAACT
16307292 CTTAGACTAGGAA-TGAACTCCGTATG
1 CTTAGACTAGGAATTGAACTCCGTATG
16307318 CTTAGAC-ATGGAATTGAACTCCGTATG
1 CTTAGACTA-GGAATTGAACTCCGTATG
16307345 C
1 C
16307346 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 1 0.04
26 11 0.42
27 14 0.54
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGAATTGAACTCCGTATG
Found at i:16309475 original size:26 final size:26
Alignment explanation
Indices: 16309437--16309489 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16309427 TCGATCCGAT
* *
16309437 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
16309463 CTTAGACAT-GGAATCAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
16309489 C
1 C
16309490 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:16309971 original size:26 final size:26
Alignment explanation
Indices: 16309937--16309989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16309927 CTGGTCTGCT
*
16309937 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
16309963 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16309989 C
1 C
16309990 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16310346 original size:26 final size:26
Alignment explanation
Indices: 16310317--16310369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16310307 CCGATTCGAT
16310317 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16310343 CTTAGACATGGAATGACCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16310369 C
1 C
16310370 CTAAGATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16311340 original size:26 final size:26
Alignment explanation
Indices: 16311304--16311356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16311294 TCGATCCGCT
16311304 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16311330 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16311356 C
1 C
16311357 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16311662 original size:12 final size:12
Alignment explanation
Indices: 16311630--16311662 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
16311620 CCCCCCTACG
*
16311630 TGCTGTTGATCC
1 TGCTGTTGCTCC
16311642 TGCTGTTGCTCC
1 TGCTGTTGCTCC
16311654 TGCTGTTGC
1 TGCTGTTGC
16311663 AATCCTCGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.42
Consensus pattern (12 bp):
TGCTGTTGCTCC
Found at i:16312199 original size:26 final size:26
Alignment explanation
Indices: 16312161--16312213 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16312151 CTGGTCCGAT
16312161 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
16312187 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
16312213 C
1 C
16312214 CTAAGCCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16312475 original size:158 final size:156
Alignment explanation
Indices: 16312187--16312621 Score: 425
Period size: 158 Copynumber: 2.8 Consensus size: 156
16312177 ACTTCGTATG
* * * * *
16312187 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCACCCACGAAACGAGCGTGCGGGTGCTTAGCC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
* * * * *
16312252 AGCCGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATCTT
66 A-CCGGAGAGGCAGAATGCGTAAGCCAGGCATCGACCCGATCCCCCCTTGCGTGCTGTCGATCTT
** *
16312317 GCTACCGTAACCCTCAGTCCGATCT-GA
130 GCTACCACAACCCTCAGTCC-AGCTGGA
* * * *
16312344 TCTTAGA-TTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACAAGCGTACAGGCGCTGA
1 -CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACAAGCGTGCGGGCGCTCA
* * * * *
16312407 GCCTACCGGAGAGGCATAATGCGTAAGCCAGGCATTGGCTCGAT-CCCCCTCTGCGTGCTGTCGG
63 GCC-ACCGGAGAGGCAGAATGCGTAAGCCAGGCATCGACCCGATCCCCCCT-TGCGTGCTGTCGA
*
16312471 TCTTGCTACCACAACCCTCGGTCCAGCTGGGA
126 TCTTGCTACCACAACCCTCAGTCCAGCT-GGA
* * * *
16312503 CTTAGACATGGAATGAACTCCCTATGCCTATGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACAAGCGTGCGGGCGCTCAGC
** * * * * *
16312568 CGGTCGGAGAGGCAGAATGCG-AAGTCGGGGATCGTCCAG-TCCCCCC-TGCGTGCT
65 C-ACCGGAGAGGCAGAATGCGTAAGCCAGGCATCGACCCGATCCCCCCTTGCGTGCT
16312622 ACCGATCCTA
Statistics
Matches: 226, Mismatches: 42, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
156 8 0.04
157 16 0.07
158 150 0.66
159 52 0.23
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
ACCGGAGAGGCAGAATGCGTAAGCCAGGCATCGACCCGATCCCCCCTTGCGTGCTGTCGATCTTG
CTACCACAACCCTCAGTCCAGCTGGA
Found at i:16312690 original size:26 final size:27
Alignment explanation
Indices: 16312661--16312716 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
16312651 GGTCCAATCA
16312661 TAGACTGG-GAATGAACTCCGTATG-CT
1 TAGACTGGTG-ATGAACTCCGTATGCCT
*
16312687 TAGACTGGTGATGAACTCTGTATGCCT
1 TAGACTGGTGATGAACTCCGTATGCCT
16312714 TAG
1 TAG
16312717 TCAACCCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (27 bp):
TAGACTGGTGATGAACTCCGTATGCCT
Found at i:16313420 original size:26 final size:26
Alignment explanation
Indices: 16313382--16313434 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16313372 GGCTCAAAAT
16313382 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16313408 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16313434 C
1 C
16313435 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16314005 original size:13 final size:13
Alignment explanation
Indices: 16313987--16314011 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16313977 GCGCTCAGTC
16313987 GATCGGAGAGGCT
1 GATCGGAGAGGCT
16314000 GATCGGAGAGGC
1 GATCGGAGAGGC
16314012 AGAATGTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
GATCGGAGAGGCT
Found at i:16314156 original size:209 final size:210
Alignment explanation
Indices: 16313794--16314179 Score: 499
Period size: 209 Copynumber: 1.8 Consensus size: 210
16313784 TCAGCCGACT
** * *
16313794 GGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTTTATGCTGCCCGATCTTACTG
1 GGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGGATGCTGCCCGATCCTACTA
* * *
16313859 CTGGTCTTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
66 CTGGTCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTT
* * ** * *
16313924 AGACTGGGGATGAACTTCGTATGCCTAAGTCAACCTATGAAATGAGCATGTGAGCGCTCAGTCGA
131 AGACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCATGTGAGCGCTCAGTCGA
16313989 TCGGAGAGGCTGATC
196 TCGGAGAGGCTGATC
** * * * * * *
16314004 GGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCCCTGGGTGCT-CTCGATCCTGCTA
1 GGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGGATGCTGCCCGATCCTACTA
* * * *
16314068 CTGGTCTTGCTGCCGTAATCCTCGGTCCT-GTCCGATCTTACCCTGGGAATGAACTCCGTATGCT
66 CTGGTCTTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTACACTGGGAATGAACTCCATATGCT
*
16314132 TAGA-TATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGC
130 TAGACT-GGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGC
16314180 GTGCGGGCAC
Statistics
Matches: 148, Mismatches: 26, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
208 1 0.01
209 102 0.69
210 45 0.30
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (210 bp):
GGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGGATGCTGCCCGATCCTACTA
CTGGTCTTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAACCAACCCACGAAATGAGCATGTGAGCGCTCAGTCGA
TCGGAGAGGCTGATC
Found at i:16315207 original size:158 final size:156
Alignment explanation
Indices: 16314623--16315234 Score: 464
Period size: 159 Copynumber: 3.9 Consensus size: 156
16314613 CCGCTACCGT
* * *
16314623 TCCTGCTGCCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCC
1 TCCTGCTACCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
16314688 AACCCACGAAACGAGCGTACGGGCACTCAAGCCGACCGGAAAGACAGAATGCGCAAGTTGAGGAT
66 AACCCACGAAACGAGCGTGCGGGCACTCAA-TCGACCGGAGAGGCAGAATGCGCAAGTCGAGGAT
* * * * * **
16314753 TGACCTGATCCACCTCTGTGTGGTGCCGG
130 CGGCCCG-TCCCCCTTTCCGT-GTGCCGG
* ** *
16314782 TCCTGCCACCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGC
1 TCCTGCTACCACAACCCTCG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * ** * * **
16314847 CAACCCATGAAACGGGCATGCAGGTGCTCAGTCGACCGGAGAGGCAAAATGCATAAGTC-AGGGA
65 CAACCCACGAAACGAGCGTGCGGGCACTCAATCGACCGGAGAGGCAGAATGCGCAAGTCGA-GGA
* *
16314911 TCGGCCCGGT-CCCC-TCCCGTGTGCTATCGA
129 TCGGCCC-GTCCCCCTTTCCGTGTGC---CGG
* * * ** * **
16314941 TCCTGCTACCGCAACCCTCAGACCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGAGTAA
1 TCCTGCTACCACAACCCTC-GTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
* ** * * * ** * ** * * *
16315004 GTCAACTGACAAAATGAGCGTGTGGGTGCTGAA-CTGGTCGAAGAGGCATAATGCGTAAGTCGAG
63 GCCAACCCACGAAACGAGCGTGCGGGCACTCAATC-GACCGGAGAGGCAGAATGCGCAAGTCGAG
*
16315068 GATCGGCCCGTCCCCCTTTCCGCGCTGCCGG
127 GATCGGCCCGTCCCCCTTTCCGTG-TGCCGG
* * *
16315099 TACC-ACTGCCACAACCCTCAGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAG
1 T-CCTGCTACCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * *
16315163 CCAACCCATGAAACGGGCGTGCGGGCACTCAATCGGCCGGAGAGGCAGAATGAGCAAGCCGGGGA
64 CCAACCCACGAAACGAGCGTGCGGGCACTCAATCGACCGGAGAGGCAGAATGCGCAAGTCGAGGA
16315228 TCGGCCC
129 TCGGCCC
16315235 TATCCCTCCT
Statistics
Matches: 345, Mismatches: 90, Indels: 37
0.73 0.19 0.08
Matches are distributed among these distances:
156 4 0.01
157 5 0.01
158 106 0.31
159 154 0.45
160 73 0.21
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
TCCTGCTACCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACGAGCGTGCGGGCACTCAATCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATC
GGCCCGTCCCCCTTTCCGTGTGCCGG
Found at i:16315330 original size:26 final size:26
Alignment explanation
Indices: 16315301--16315367 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
16315291 TAGACTGGAA
*
16315301 ATGAACTCCGCATGCTTA-AACTGGGG
1 ATGAACTCCGTATGCTTAGAA-TGGGG
16315327 ATGAACTCCGTATGCTTAGAATGGGG
1 ATGAACTCCGTATGCTTAGAATGGGG
16315353 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
16315368 CTAAGTCAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGAATGGGG
Found at i:16315721 original size:26 final size:26
Alignment explanation
Indices: 16315683--16315761 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
16315673 CCGATCCGAT
*
16315683 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16315709 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
16315735 CTTAAACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16315761 C
1 C
16315762 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16315832 original size:394 final size:380
Alignment explanation
Indices: 16315090--16315871 Score: 951
Period size: 394 Copynumber: 2.0 Consensus size: 380
16315080 CCCCTTTCCG
*
16315090 CGCTGCCGGTACCACTGCCACAACCCTCAGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTA
1 CGCTGCCGGTACCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * ** * *
16315155 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAATCGGCCGGAGAGGCAGAATGAGCAA
66 TACCTAAGCCAACCCACGAAACGAACGTGCGAGCACTCAACCGGCCGGAGAGGCAGAATGAGCAA
* * * * * * * *
16315220 GCCGGGGATCGGCCCTATCCCTCCTGCGTGCTACTGATCCTGCTGTCACAACCCTCATTCTGGTT
131 GCCAGGGATCGGCCCGATCCCTCCTCCGTGCTACCGATCCTGCTGTCACAACCCTCAGTCCGATC
* *
16315285 CGATCTTAGACTGGAAATGAACTCCGCATGCTTAAACTGGGGATGAACTCCGTATGCTTAGAATG
196 CGATCTTAGACTGGAAATGAACTCCGCATGCTTAAACTGGGAATGAACTCCGTATGCTTAAAATG
* * * *
16315350 GGGATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCAGGCGCTCAATCGGTCGGAG
261 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGAGCTCAATCGGTCGGAG
* ** * * *
16315415 AGGCATAATGCGTAAGCCGGGGATCAACCTGGTCCCTCTCTGCGTGCTGCCGATCC
326 AGGCAGAATGCACAAGCCGGGGATCAACCCGATCCC-CCCTGCGTGCTGCCGATCC
* * * * **
16315471 CGCTGTCGGT-CCTACTGCTACAACCCTTAGTCCGACTGGGGCTTAGACATGGAATGACCTCTGT
1 CGCTGCCGGTACC-ACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* *
16315535 ATACCTAAGCCAACCCACGAAACGAACGTGCGAGCGCTCAACCGGCCGGAGAGGCAGAATGTGCA
65 ATACCTAAGCCAACCCACGAAACGAACGTGCGAGCACTCAACCGGCCGGAGAGGCAGAATGAGCA
16315600 AGCCAGGGATCGGCCCGATCCCTCCCTCCGTGCTACCGATTCTGCTGCTGGTCCTGCTACTGAAA
130 AGCCAGGGATCGGCCCGATCCCT-CCTCCGTGCTACCGA-TC--CTGCT-G---T-C-AC---AA
* * * *
16315665 CCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-GGAATGAACTC
182 CCCTCAGTCCGATCCGATCTTAGACTGGAAATGAACTCCGCATGCTTAAAC-TGGGAATGAACTC
* *
16315729 CGTATGCTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCCGGA
246 CGTATGCTTAAA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGA
* * * *
16315793 GCTCAGTCGG-CTGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTA
310 GCTCAATCGGTC-GGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTG
*
16315857 TCGATCC
374 CCGATCC
*
16315864 TGCTGCCG
1 CGCTGCCG
16315872 CAACCCTCGG
Statistics
Matches: 336, Mismatches: 48, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
380 2 0.01
381 132 0.39
382 13 0.04
383 2 0.01
385 5 0.01
386 1 0.00
389 1 0.00
390 1 0.00
391 2 0.01
393 23 0.07
394 151 0.45
395 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (380 bp):
CGCTGCCGGTACCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
TACCTAAGCCAACCCACGAAACGAACGTGCGAGCACTCAACCGGCCGGAGAGGCAGAATGAGCAA
GCCAGGGATCGGCCCGATCCCTCCTCCGTGCTACCGATCCTGCTGTCACAACCCTCAGTCCGATC
CGATCTTAGACTGGAAATGAACTCCGCATGCTTAAACTGGGAATGAACTCCGTATGCTTAAAATG
GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGAGCTCAATCGGTCGGAG
AGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGCCGATCC
Found at i:16316239 original size:26 final size:26
Alignment explanation
Indices: 16316210--16316262 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16316200 CCGGTCCTAT
*
16316210 CTTAGACTG-GGAATGAACTCCTTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
16316236 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
16316262 C
1 C
16316263 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:16317417 original size:159 final size:159
Alignment explanation
Indices: 16317118--16317429 Score: 362
Period size: 159 Copynumber: 2.0 Consensus size: 159
16317108 CCGATCTGAT
* ** ** *
16317118 CTTAGACTGGCAATGAACTCCATATGCATAAGTTAACCCATGAAACGAGCGTACGGGTGCTGAGC
1 CTTAGACTGGCAATGAACTCCATATACATAAGCCAACCCACAAAACGAGCGTACGGGCGCTGAGC
* * *
16317183 CAACCGAAGAGGCATAATGCGTAAGTCGAGGAATGGCCTGGTCCCCCTCTACGTTCTGTCAGTCC
66 CAACCGAAGAGGCATAATGCGCAAGTCGAGGAATGGCCTGGTCCCCCTCTACGTGCTATCAGTCC
** ** *
16317248 TGCTGGCACAACCCTTGGTCTGGCTGGGG
131 CACTACCACAACCCTCGGTCTGGCTGGGG
* * *
16317277 CTTAGACATGG-AATGAACTCCCTATACCTAAGCCAACCCACAAAACGGGCGTACGGGCGCTGAG
1 CTTAGAC-TGGCAATGAACTCCATATACATAAGCCAACCCACAAAACGAGCGTACGGGCGCTGAG
* * * **
16317341 CCAACCGAAGAGGCATAATGTGCAAG-CTG-GGGATCGG-CTCGGTCCCCTTCTACGTGCTATTG
65 CCAACCGAAGAGGCATAATGCGCAAGTC-GAGGAAT-GGCCT-GGTCCCCCTCTACGTGCTATCA
16317403 GTCCCACTACCACAACCCTCGGTCTGG
127 GTCCCACTACCACAACCCTCGGTCTGG
16317430 TATTTAGTAG
Statistics
Matches: 127, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
158 7 0.06
159 117 0.92
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGCAATGAACTCCATATACATAAGCCAACCCACAAAACGAGCGTACGGGCGCTGAGC
CAACCGAAGAGGCATAATGCGCAAGTCGAGGAATGGCCTGGTCCCCCTCTACGTGCTATCAGTCC
CACTACCACAACCCTCGGTCTGGCTGGGG
Found at i:16317907 original size:26 final size:26
Alignment explanation
Indices: 16317869--16317921 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16317859 GGCTCAAAAT
*
16317869 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
16317895 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCTATATG
16317921 C
1 C
16317922 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16318766 original size:26 final size:26
Alignment explanation
Indices: 16318737--16318789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16318727 CCAGTTTGAT
16318737 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16318763 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16318789 C
1 C
16318790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16319741 original size:159 final size:159
Alignment explanation
Indices: 16319446--16319741 Score: 403
Period size: 159 Copynumber: 1.9 Consensus size: 159
16319436 TTGGTCCTGC
* * * *
16319446 TGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGACCTTCGTATGCATAAGCCAACCC
1 TGCCACAACCCTCGGTCAGACTGGGGCTTAGACATGGAATGACCTCCCTATGCATAAGCCAACCC
* * * * * * *
16319511 ATGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCT
66 ACGAAACGAGCGTGCGAGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGACCT
16319576 GATCCCCATCTGCATGCTACCAGTCCCGT
131 GATCCCCATCTGCATGCTACCAGTCCCGT
* * * *
16319605 TGCCACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGATCTCCCTATGCCTGAGCCAACCC
1 TGCCACAACCCTCGGTCAGACTGGGGCTTAGACATGGAATGACCTCCCTATGCATAAGCCAACCC
* * * * *
16319670 ACGAAACGGGCGTGCGAGCGCTCAATCGATCGGAGAGGTAGAATGCACAAGTCAGGGATCGACCT
66 ACGAAACGAGCGTGCGAGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGACCT
*
16319735 GGTCCCC
131 GATCCCC
16319742 CCTACGTGCT
Statistics
Matches: 116, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
159 116 1.00
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
TGCCACAACCCTCGGTCAGACTGGGGCTTAGACATGGAATGACCTCCCTATGCATAAGCCAACCC
ACGAAACGAGCGTGCGAGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGACCT
GATCCCCATCTGCATGCTACCAGTCCCGT
Found at i:16320178 original size:26 final size:26
Alignment explanation
Indices: 16320140--16320191 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16320130 CCGATTCAAT
*
16320140 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16320166 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16320192 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16320488 original size:159 final size:158
Alignment explanation
Indices: 16320319--16320985 Score: 431
Period size: 159 Copynumber: 4.2 Consensus size: 158
16320309 CTTGGTTTGA
* * *
16320319 TCCGATCTTAGACTGGGAATGAACTCGGTATGCCTAAGTCATCCCACGAAACGAGCATGCAAGCG
1 TCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCAAGCA
* * * * * * * *
16320384 CTGACCTAGTCGGAGAGGCATAATGCGCAAGCTAGGGATCGACCT-AGTCCCCTTCTGTGTGCTG
66 CTCACCTAGCCGGAGAGGCAGAATGAGCAAGCCAGGGATCGACCTGA-TCCCC-CCTGCGTGCTA
* *
16320448 TCGATCCCACTGTCAG-AACCCTCTGTCTGG
129 TCGATCCCACTG-CAGCAACCCTCAGTCCGG
* * * * * * * * **
16320478 -CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGG
1 TC-CGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCAAG
* * **
16320541 CACTCAGCTGGCCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGTCTGATCCCCCCTGCGTGCTA
64 CACTCACCTAGCCGGAGAGGCAGAATGAGCAAGCCAGGGATCGACCTGATCCCCCCTGCGTGCTA
** *
16320606 TCGATCCTGCTGCCGCAACCCTCAGTCCGG
129 TCGATCCCACTGCAGCAACCCTCAGTCCGG
* * * * ***
16320636 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACAAACGTGTGGGCA
1 TCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCAAGCA
* * * * * * * * * **
16320701 CTGA-CTCGGCCGGAGAGGCATAATGCGCAAGTCGGGGTTTGGCCTGATTCCCTTCTGCGTGCTA
66 CTCACCT-AGCCGGAGAGGCAGAATGAGCAAGCCAGGGATCGACCTGA-TCCCCCCTGCGTGCTA
** *
16320765 TCGATCCTGCTACCA-CAACCCTC-GATCC-G
129 TCGATCCCACT-GCAGCAACCCTCAG-TCCGG
* * * * * * * * * **
16320794 ACTAGGGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
1 TC-CGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCAAG
* * * * * * *
16320858 CACTCAGCC-GGCCGGAGAGGCAGAATGTGTAAGCCGGGGATCGGCCCGGT-CCCCCTAGCGTGC
64 CACTCA-CCTAGCCGGAGAGGCAGAATGAGCAAGCCAGGGATCGACCTGATCCCCCCT-GCGTGC
* * ** * *
16320921 TGTTGATCCTGCTGTC-GCAACCCTCGGTTCGG
127 TATCGATCCCACTG-CAGCAACCCTCAGTCCGG
* *
16320953 TCCGATCTTAGACTGGGAATGAACTCCATATGC
1 TCCGAGCTTAGACTGGGAATGAACTCCGTATGC
16320986 TTAGACTGGG
Statistics
Matches: 400, Mismatches: 88, Indels: 41
0.76 0.17 0.08
Matches are distributed among these distances:
157 10 0.03
158 171 0.43
159 214 0.54
160 4 0.01
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
TCCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCATGCAAGCA
CTCACCTAGCCGGAGAGGCAGAATGAGCAAGCCAGGGATCGACCTGATCCCCCCTGCGTGCTATC
GATCCCACTGCAGCAACCCTCAGTCCGG
Found at i:16320673 original size:317 final size:317
Alignment explanation
Indices: 16320165--16320985 Score: 981
Period size: 317 Copynumber: 2.6 Consensus size: 317
16320155 AACTTCGTAT
* * * * * *
16320165 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACGCAAGAAACGAACGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
16320230 CCGACCGAAAAGGTAGAATGCA-TAAGCCAGGGA-CTGGCCCGATCCCCCCTTGCGTGCTATCGA
66 CCGGCCGGAGAGGCAGAATG-AGTAAGCCAGGGATC-GGCCCGATCCCCCC-TGCGTGCTATCGA
* * ** * * * * *
16320293 TCTTGCTACTACAACACTTGGTTTGATCCGATCTTAGACTGGGAATGAACTCGGTATGCCTAAGT
128 TCCTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
16320358 CATCCCACGAAACGAGCATGCAAGCGCTGAC-CTAGTCGGAGAGGCATAATGCGCAAG-CTAGGG
193 CATCCCACGAAACAAACATGCAAGCACTGACTC-AGCCGGAGAGGCATAATGCGCAAGTC-AGGG
* * ** * * * *
16320421 ATCGACCT-AGTCCCCTTCTGTGTGCTGTCGATCCCACTGTCAGAACCCTCTG-TCTGGCTGGG
256 ATCGACCTGA-TCCCCTTCTGCGTGCTATCGATCCCACTACCACAACCCTC-GATCCGACTAGG
* * *
16320483 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
16320548 CTGGCCGGAGAGGCAGAATGAGCAAGCCAGGGATCGGTCTGATCCCCCCTGCGTGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGAGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
* *
16320613 TGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAT
131 TGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAT
* *** * * * * *
16320678 CCCACGAAACAAACGTGTGGGCACTGACTCGGCCGGAGAGGCATAATGCGCAAGTCGGGGTTTGG
196 CCCACGAAACAAACATGCAAGCACTGACTCAGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGA
* **
16320743 CCTGATTCCCTTCTGCGTGCTATCGATCCTGCTACCACAACCCTCGATCCGACTAGG
261 CCTGATCCCCTTCTGCGTGCTATCGATCCCACTACCACAACCCTCGATCCGACTAGG
*
16320800 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
16320865 CCGGCCGGAGAGGCAGAATGTGTAAGCCGGGGATCGGCCCGGT-CCCCCTAGCGTGCTGTTGATC
66 CCGGCCGGAGAGGCAGAATGAGTAAGCCAGGGATCGGCCCGATCCCCCCT-GCGTGCTATCGATC
* *
16320929 CTGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
130 CTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
16320986 TTAGACTGGG
Statistics
Matches: 427, Mismatches: 69, Indels: 15
0.84 0.14 0.03
Matches are distributed among these distances:
316 7 0.02
317 323 0.76
318 96 0.22
319 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGAGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
TGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAT
CCCACGAAACAAACATGCAAGCACTGACTCAGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGA
CCTGATCCCCTTCTGCGTGCTATCGATCCCACTACCACAACCCTCGATCCGACTAGG
Found at i:16320995 original size:26 final size:26
Alignment explanation
Indices: 16320959--16321009 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16320949 TCGGTCCGAT
16320959 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16320985 CTTAGACTGGGGATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
16321010 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16321708 original size:26 final size:26
Alignment explanation
Indices: 16321671--16321720 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16321661 GCTCAAACTT
16321671 TTAGAATAGGAATGAACTCCGTATCC
1 TTAGAATAGGAATGAACTCCGTATCC
*
16321697 TTAGACAT-GGAATGAACTCTGTAT
1 TTAGA-ATAGGAATGAACTCCGTAT
16321721 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (26 bp):
TTAGAATAGGAATGAACTCCGTATCC
Found at i:16322764 original size:26 final size:26
Alignment explanation
Indices: 16322735--16322787 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16322725 CCGGTCTAAT
16322735 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16322761 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16322787 C
1 C
16322788 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16323255 original size:26 final size:26
Alignment explanation
Indices: 16323226--16323276 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16323216 GGTCCGATCC
16323226 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTAGGG-ATGAACTCCGTATGCT
16323252 TAGACTAGGGATGAACTCCGTATGC
1 TAGACTAGGGATGAACTCCGTATGC
16323277 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTATGCT
Found at i:16323983 original size:26 final size:26
Alignment explanation
Indices: 16323945--16323994 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16323935 GGCTCAAAAT
*
16323945 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
16323971 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
16323995 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:16324399 original size:159 final size:157
Alignment explanation
Indices: 16323970--16324473 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 157
16323960 AACTTCGTAC
*
16323970 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGCG-CGTGCAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GACGTGCAGGCGCTCA
* * * *
16324034 GCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCTGATCCCCCCCTGTGTGCTATCGAT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTG-T-CCCCCCTGTGTGCTGTCGAT
* *
16324099 CCTGCT-CTCGCAACCCTCGGTCCGGTCCAA
128 CCTGCTGC-CGCAACCCTCGATCCGCTCCAA
* * * * *
16324129 TCTTAGAC-TAGGAATGAACTCCGTAT-CCATAAGTCAACCCACAAAAC-GAGCGTGCGGGTGCT
1 GCTTAGACAT-GGAATGAACTCCGTATGCC-TAAGCCAACCCACGAAACGGA-CGTGCAGGCGCT
* ** * * * *
16324191 GAGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGTGTGCTGTCG
63 CAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGG-CCTGTCCCCC-CTGTGTGCTGTCG
* * ***
16324256 ATCCCGCTGCCACAACCCTCGATCCGACT-GGG
126 ATCCTGCTGCCGCAACCCTCGATCCG-CTCCAA
* *
16324288 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCGCTCAG
* ** * * * *
16324353 CCGACCGGAGAGGCAAAACGCGTGAGCTGGGGATCCG-TTGGTTCCCCCCTGCGTG-TGATCGAT
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCT-G-TCCCCCCTGTGTGCTG-TCGAT
* **
16324416 CCTGCTGCCGCAACCCTCTG-TCCGGTCTGA
128 CCTGCTGCCGCAACCCTC-GATCCGCTCCAA
* *
16324446 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16324474 TTAGCTGGGG
Statistics
Matches: 277, Mismatches: 51, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
157 5 0.02
158 65 0.23
159 197 0.71
160 10 0.04
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGTCCCCCCTGTGTGCTGTCGATCCT
GCTGCCGCAACCCTCGATCCGCTCCAA
Found at i:16324889 original size:502 final size:500
Alignment explanation
Indices: 16324096--16325025 Score: 1165
Period size: 502 Copynumber: 1.9 Consensus size: 500
16324086 GTGTGCTATC
*
16324096 GATCCTGCTCTCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCATAA
1 GATCCTACTCTCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCATAA
* ***
16324161 GTCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGG
66 GTCAACCCACAAAACGAGCGTGCGGGTACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGG
* * *
16324226 ATCGGCCCAGTCCCCCTCTGTGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCT
131 ATCGACCCAGTCCCCCTCTGTATGCTGCCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCT
16324291 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAAGCGCTCAGCCG
196 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAAGCGCTCAGCCG
* ** * * *** * *
16324356 ACCGGAGAGGCAAAACGCGTGAGCTGGGGATCCGTTGGTTCCCCCCTGCGT-GTGATCGATCCTG
261 ACCGGAGAGGCAAAACACGAAAGCCGGGGATCAGCCCGATCCCCCCTGCGTAGTGAT-AATCCTG
* * *
16324420 CTGCCGCAACCCTCTG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT-AGCTGGG
325 CTGCCGCAACCCTC-GATCCGATCTCATCTTAGA-TGGGAATGAACTCCATATGCTTAAACTGGG
* *
16324483 GATGAACCCTTCCCCTATGCCTAAGTC-A-CCACGAAACGAGCGTGCGACATTCAACGCCCAGTA
388 GAAGAA--C-T-CCCTATGCCTAAGTCAACCCACAAAACGAGCGTGCGACATTCAACGCCCAGTA
16324546 GAAGGCACATATGCGTAAGTCAGGGACCGGCTCGGTCCCCCTACGTGCTGGT
449 GAAGGCACATATGCGTAAGTCAGGGACCGGCTCGGTCCCCCTACGTGCTGGT
* * * ** * *
16324598 GATCCTACTGTCGTAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC-TA
1 GATCCTACTCTCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTAT-CCATA
* * * * * *
16324662 AGTCAACGCACGAAACGAGCGTGCGGGTACTGAGCTAACCGGAGAGGCATAATGCGTAAGTC-GA
65 AGTCAACCCACAAAACGAGCGTGCGGGTACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAG-
* * * * * *
16324726 GGATCGACCCGGTCCCCTTCT-TCATGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGG
129 GGATCGACCCAGTCCCCCTCTGT-ATGCTGCCGATCCCGCTGCCACAACCCTCGATCCGACTGGG
* * * ** * *
16324790 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGTTCAG
193 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAAGCGCTCAG
* * * * * *
16324855 TCGACCTGAGAGGCAGAATACGAAAGCCGGGGATCAGCCCGATCCCCCCTGCGTATTGCTAATCC
258 CCGACCGGAGAGGCAAAACACGAAAGCCGGGGATCAGCCCGATCCCCCCTGCGTAGTGATAATCC
* * * * *
16324920 TGTTGCCGTAACCCTCGATCCGATCTCATTTTAGATTGGAATGAACTCCGTATGCTTAAACTGGG
323 TGCTGCCGCAACCCTCGATCCGATCTCATCTTAGATGGGAATGAACTCCATATGCTTAAACTGGG
*
16324985 GAAGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
388 GAAGAACTCCCTATGCCTAAGTCAACCCACAAAACGAGCGT
16325026 CCAGGTGCTC
Statistics
Matches: 359, Mismatches: 61, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
498 14 0.04
499 2 0.01
500 15 0.04
501 23 0.06
502 300 0.84
503 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (500 bp):
GATCCTACTCTCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCATAA
GTCAACCCACAAAACGAGCGTGCGGGTACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGG
ATCGACCCAGTCCCCCTCTGTATGCTGCCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCT
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAAGCGCTCAGCCG
ACCGGAGAGGCAAAACACGAAAGCCGGGGATCAGCCCGATCCCCCCTGCGTAGTGATAATCCTGC
TGCCGCAACCCTCGATCCGATCTCATCTTAGATGGGAATGAACTCCATATGCTTAAACTGGGGAA
GAACTCCCTATGCCTAAGTCAACCCACAAAACGAGCGTGCGACATTCAACGCCCAGTAGAAGGCA
CATATGCGTAAGTCAGGGACCGGCTCGGTCCCCCTACGTGCTGGT
Found at i:16325595 original size:11 final size:11
Alignment explanation
Indices: 16325579--16325622 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
16325569 CGGTTAGGCT
16325579 CTCCGACGATG
1 CTCCGACGATG
16325590 CTCCGACGATG
1 CTCCGACGATG
* *
16325601 CTCCAATGATG
1 CTCCGACGATG
16325612 CTCCGACGATG
1 CTCCGACGATG
16325623 GTGCCCCAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16325734 original size:26 final size:26
Alignment explanation
Indices: 16325692--16325743 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16325682 GGCTCAAAAT
16325692 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16325718 CTTAGACAT-GGAGTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16325744 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16326083 original size:27 final size:25
Alignment explanation
Indices: 16326047--16326098 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16326037 CGGTCTGATG
**
16326047 TTAGATTGGGAATGTAGTCCGTATGC
1 TTAGATTGGG-ATAAAGTCCGTATGC
16326073 TTAGACTTGGGATAAAGTCCGTATGC
1 TTAGA-TTGGGATAAAGTCCGTATGC
16326099 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (25 bp):
TTAGATTGGGATAAAGTCCGTATGC
Found at i:16326453 original size:26 final size:26
Alignment explanation
Indices: 16326424--16326479 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16326414 CCAGTCCGAT
16326424 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16326450 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16326476 CTTA
1 CTTA
16326480 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16326958 original size:26 final size:26
Alignment explanation
Indices: 16326929--16326978 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16326919 TCGATTCGAT
*
16326929 CTTAAACT-GGGAATGAACTTCGTATG
1 CTTAAACTAGGG-ATGAACTCCGTATG
*
16326955 CTTAGACTAGGGATGAACTCCGTA
1 CTTAAACTAGGGATGAACTCCGTA
16326979 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGGATGAACTCCGTATG
Found at i:16328149 original size:26 final size:26
Alignment explanation
Indices: 16328120--16328172 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16328110 CTGGTCCGAT
16328120 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
16328146 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16328172 C
1 C
16328173 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16328277 original size:185 final size:185
Alignment explanation
Indices: 16327956--16328331 Score: 465
Period size: 185 Copynumber: 2.0 Consensus size: 185
16327946 AAAACCCTCA
* * * * * *
16327956 GTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
1 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCAC
* * * *
16328021 TCAGCCGGCCAGAGAGGCAGAATGCACAAGTCGAGGATCGATCCGATCCCCCCCTGCGTGCTGCC
66 TCAGCCGACCAGAGAGGCAGAAAGCACAAGTCGAGGACCGATCCGATCCCCCCCTGCGTGCTACC
*
16328086 GATCCTGCTACCGCAACACTCAA-TCTGGTCCGATCTTAGACT-GAGAATGAACTCC
131 GATCCTGCTACCGCAACACTCAATTC-GATCCGATCTTAGACTAG-GAATGAACTCC
*
16328141 GTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCA
1 GTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCA
* * * *
16328205 CTCAGCCGACCGGAGAGGCAGAAAGCGCAAGTCGAGGACCGA-CTTGAAT-CCCCCCTGTGTGCT
65 CTCAGCCGACCAGAGAGGCAGAAAGCACAAGTCGAGGACCGATC-CG-ATCCCCCCCTGCGTGCT
** * ** *
16328268 ATGGATCCTGCTACCGCAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGAACTCC
128 ACCGATCCTGCTACCGCAACACTCAATTCGATCCGATCTTAGACTAGGAATGAACTCC
*
16328326 ATATGC
1 GTATGC
16328332 CAAAGTCAAC
Statistics
Matches: 163, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
184 1 0.01
185 156 0.96
186 6 0.04
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (185 bp):
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCAC
TCAGCCGACCAGAGAGGCAGAAAGCACAAGTCGAGGACCGATCCGATCCCCCCCTGCGTGCTACC
GATCCTGCTACCGCAACACTCAATTCGATCCGATCTTAGACTAGGAATGAACTCC
Found at i:16328441 original size:159 final size:159
Alignment explanation
Indices: 16328145--16328544 Score: 425
Period size: 159 Copynumber: 2.5 Consensus size: 159
16328135 AACTCCGTAT
* * **
16328145 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
16328210 CCGACCGGAGAGGCAGAAAGCGCAAGTCGAGGACCGACTTGAATCCCCCCTGTGTGCTATGGATC
66 CCGACCGGAGAGGCAGAAAGCGCAAGTCGAGGACCGACCTGAATCCCCCCTGTGTGCTATGGATC
** * *
16328275 CTGCTACCGCAACCCTCGGTTCGATCT-GA
131 CCACTACCACAACCCTCGGTCCGA-CTGGA
* * * * *
16328304 TCTTAGAC-TAGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCATGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * **
16328368 GCCTACTGGAGAGGCATAATGCGCAAGTCG-GGCATCGGCCT-AATCCCTTTCTGTGTGCTACTG
65 GCCGACCGGAGAGGCAGAAAGCGCAAGTCGAGG-ACCGACCTGAATCCC-CCCTGTGTGCTA-TG
* *
16328431 G-TCCCACTACCACAACCCTTGGTCCGACTGGG
127 GATCCCACTACCACAACCCTCGGTCCGACTGGA
* * * * * *
16328463 GCTTAGACATGGAATGAACTCCCTTTGCCCAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
16328528 CC-AGCCGAAGAGGCAGA
66 CCGA-CCGGAGAGGCAGA
16328545 TTGCGTAAGC
Statistics
Matches: 196, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
158 12 0.06
159 180 0.92
160 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAAAGCGCAAGTCGAGGACCGACCTGAATCCCCCCTGTGTGCTATGGATC
CCACTACCACAACCCTCGGTCCGACTGGA
Found at i:16328484 original size:344 final size:334
Alignment explanation
Indices: 16327810--16328446 Score: 731
Period size: 344 Copynumber: 1.9 Consensus size: 334
16327800 TTCGGCTGGG
*
16327810 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
** * * * * *
16327875 CCGACCGGAGAGGCAGATTGCGTAAGTTAGGGATCGACCCAATCCCTCTGTGTGCTGTCGATCCT
66 CCGACCGGAGAGGCAGAAAGCGCAAGTGAGGGACCGACCCAATCCCCCTGTGTGCTATCGATCCT
** * * ** * *
16327940 ACTGTCAAAACCCTCAGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAA
131 ACTACCAAAACCCTCAGTATGCTTAGACTAGGAATGAACTCCATATGCCAAAGTCAACCCACGAA
* * * *
16328005 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCACAAGTCGAGGATCGATCCGATCC
196 ACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGAGGATCGAGCCAATCC
* ** *
16328070 CCCCCTGCGTGCTGCCGATCCTGCTACCGCAACACTCAATCTGGTCCGATCTTAGACTGAGAATG
261 CCCCCTGCGTGCTACCGATCCCACTACCACAACACTC-ATCTGGTCCGATCTTAGACTGAGAATG
16328135 AACTCCGTAT
325 AACTCCGTAT
* *
16328145 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
** *
16328210 CCGACCGGAGAGGCAGAAAGCGCAAGTCGA-GGACCGACTTGAATCCCCCCTGTGTGCTATGGAT
66 CCGACCGGAGAGGCAGAAAGCGCAAGT-GAGGGACCGAC-CCAAT-CCCCCTGTGTGCTATCGAT
* ** *
16328274 CCTGCTACCGCAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGAACTCCATATGCCAAAGTC
128 CCTACTACCAAAACCCTCAG-T--A--TG--CTTAGACTAGGAATGAACTCCATATGCCAAAGTC
* * ** * *
16328339 AACCCACGAAACGAGCATGCGGGCGCTGAGCCTACTGGAGAGGCATAATGCGCAAGTCG-GGCAT
186 AACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGAGG-AT
*** * * *
16328403 CG-GCCTAATCCCTTTCTGTGTGCTACTGGTCCCACTACCACAAC
250 CGAGCC-AATCCCCCCCTGCGTGCTACCGATCCCACTACCACAAC
16328447 CCTTGGTCCG
Statistics
Matches: 245, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
335 93 0.38
336 4 0.02
337 30 0.12
338 1 0.00
340 1 0.00
342 2 0.01
343 4 0.02
344 110 0.45
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.19
Consensus pattern (334 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
CCGACCGGAGAGGCAGAAAGCGCAAGTGAGGGACCGACCCAATCCCCCTGTGTGCTATCGATCCT
ACTACCAAAACCCTCAGTATGCTTAGACTAGGAATGAACTCCATATGCCAAAGTCAACCCACGAA
ACGAGCATGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGTCGAGGATCGAGCCAATCC
CCCCCTGCGTGCTACCGATCCCACTACCACAACACTCATCTGGTCCGATCTTAGACTGAGAATGA
ACTCCGTAT
Found at i:16329381 original size:26 final size:26
Alignment explanation
Indices: 16329343--16329395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16329333 GGCTCAAACT
16329343 CTTAGACTGGGAATGAACGCTGTATG
1 CTTAGACTGGGAATGAACGCTGTATG
*
16329369 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACGCTGTATG
16329395 C
1 C
16329396 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCTGTATG
Found at i:16329715 original size:26 final size:26
Alignment explanation
Indices: 16329686--16329738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16329676 CCGGTTTGAT
16329686 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16329712 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16329738 C
1 C
16329739 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16330475 original size:26 final size:26
Alignment explanation
Indices: 16330446--16330498 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16330436 CCTATCCGAT
*
16330446 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
16330472 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
16330498 C
1 C
16330499 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:16330546 original size:551 final size:549
Alignment explanation
Indices: 16329342--16330600 Score: 1545
Period size: 551 Copynumber: 2.3 Consensus size: 549
16329332 TGGCTCAAAC
* * * *
16329342 TCTTAGACTGGGAATGAACGCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
* * * * * * * * * *
16329407 CATGAAATGAGCGTGCAGGCACTCAACCGATTGGAGAGGCAGAATTCATAGGTCGGGGGTCGGCC
66 CATGAAATGAGCGTGCGGGCACTTAGCCGATCGGAGAGGTAGAATGCGTAAGTCGGGGAT--GAC
* * * * * *
16329472 CGATCCCACTCTGCGTGCTGCTGGTCCGGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACAT
129 CGATCCCCCTCTGCATGCTTC-GATCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACAT
* * *
16329537 GGAATGAACTCCTTATGCCTAAGCCAACTCATGAAACAGTCGTGCGGGCGCTCAACCTGGAGGAG
193 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAACCTGGAGGAG
* * * *
16329602 AGGTAGAATGCGCAAGCTGGGGACCGACCCGATACCCCCTGCATGCTACCCATCTTGCTGCCGCA
258 AGGTAGAATACGCAAGCTGGGGACCGACCCGATACCCCCTGCATACTACCCATCCTGCTACCGCA
* * *
16329667 ACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTC
323 ACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC
* * * ** * * ** *
16329732 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGTCGGCTGGAGAGGCCGACCGG
388 CGCATCCCCAAGTCAACCCACGAAAAAAGCGTGCGGGCGCTCAGCCCACCGGAGAGGCCGACCGG
* * *
16329797 AGAGGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCTGTGTGCTGTCGATCCTGCTGCTG
453 AAACGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCTGTGTGCTGTCAATCCTGCTGCTG
* * * **
16329862 GTCCTGCTACCGTAACCCTCGGTCCGGTTTGA
518 GTCCTACTACCGTAACCCTCGATCCGATCCGA
* * * *
16329894 TCTTTGACTGGGAAGGAACTCCGGATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCGACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
* ** * *
16329959 CATGAAATGAACGTGCGGGTGCTTAGCCGATCGGAGAGTTAGAATGCGTAAATCGGGGATGACCG
66 CATGAAATGAGCGTGCGGGCACTTAGCCGATCGGAGAGGTAGAATGCGTAAGTCGGGGATGACCG
* *
16330024 AGTCCCCCTCTGCATGCTATCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
131 A-TCCCCCTCTGCATGCT-TCGATCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATG
* ** *
16330089 GAATGAACTCCCTATGCCTAAGCCAACCCACT-AAACGGGCGTGCGGGCGCTCAGTC-GGTCGGA
194 GAATGAACTCCCTATGCCTAAGCCAACCCA-TGAAACAGGCGTGCGGGCGCTCAACCTGG-AGGA
* * * * * ** * **
16330152 GAGGTAGAATACGCAAGCTGGGGATCGGCTCGGTCCCCCCTGTGTACTGCTGATCCTGCTACCGC
257 GAGGTAGAATACGCAAGCTGGGGACCGACCCGATACCCCCTGCATACTACCCATCCTGCTACCGC
* *
16330217 AACCCTCGGTCCTATTAGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
322 AACCCTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* *
16330282 CTGCATCCCCAAGTCAACCCACGAAAAAAGCGTGCGGGCGCTCAGCCCACCGGAGAGGCCGATCG
387 CCGCATCCCCAAGTCAACCCACGAAAAAAGCGTGCGGGCGCTCAGCCCACCGGAGAGGCCGACCG
* ** * *
16330347 GAAACGTAGAATGTGCAAGCTG-GGAGTCGACCCAGTCCCCCTTGTGTGCTGTCAATCCTGCTGC
452 GAAACGCAGAATACGCAAGCCGAGGA-TCGACCCAGTCCCCCCTGTGTGCTGTCAATCCTGCTGC
** * *
16330411 TGGTCCTACTGTCGTAACCCTTGATCCTATCCGA
516 TGGTCCTACTACCGTAACCCTCGATCCGATCCGA
16330445 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
** * * * * **
16330510 CGCGAAACGAGCGTGCGGGCACTTAGCCGGTCGGAGAGGTAGAATGCGCATGTCGGGGACAAGCT
66 CATGAAATGAGCGTGCGGGCACTTAGCCGATCGGAGAGGTAGAATGCGTAAGTCGGGGATGA-C-
16330575 CGATCCCCC-CTGCATGCTGTCGATCC
129 CGATCCCCCTCTGCATGCT-TCGATCC
16330601 TGCTACCGTA
Statistics
Matches: 596, Mismatches: 104, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
550 10 0.02
551 471 0.79
552 112 0.19
553 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (549 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACC
CATGAAATGAGCGTGCGGGCACTTAGCCGATCGGAGAGGTAGAATGCGTAAGTCGGGGATGACCG
ATCCCCCTCTGCATGCTTCGATCCCGCTGCCACAACCCTCGATCCGACTAGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAACCTGGAGGAGAGG
TAGAATACGCAAGCTGGGGACCGACCCGATACCCCCTGCATACTACCCATCCTGCTACCGCAACC
CTCGGTCCGATTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGC
ATCCCCAAGTCAACCCACGAAAAAAGCGTGCGGGCGCTCAGCCCACCGGAGAGGCCGACCGGAAA
CGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCCTGTGTGCTGTCAATCCTGCTGCTGGTC
CTACTACCGTAACCCTCGATCCGATCCGA
Found at i:16331376 original size:26 final size:26
Alignment explanation
Indices: 16331326--16331376 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16331316 CGGTCTGATC
*
16331326 TTAGACTGGGAATGAACTCTATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
16331352 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
16331377 CCTAATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:16331702 original size:26 final size:26
Alignment explanation
Indices: 16331673--16331725 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16331663 CCAATCCGAT
16331673 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
16331699 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16331725 C
1 C
16331726 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16332896 original size:26 final size:26
Alignment explanation
Indices: 16332867--16332919 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16332857 GACTCAAACT
*
16332867 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
16332893 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
16332919 C
1 C
16332920 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16333778 original size:26 final size:26
Alignment explanation
Indices: 16333726--16333778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16333716 CCGGTCTAAT
*
16333726 CTTAGATTGGGAATGAACTCGGCATG
1 CTTAGATTGGGAATGAACTCCGCATG
* *
16333752 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGCATG
16333778 C
1 C
16333779 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGCATG
Found at i:16334234 original size:355 final size:349
Alignment explanation
Indices: 16333363--16334236 Score: 856
Period size: 355 Copynumber: 2.5 Consensus size: 349
16333353 TTGACTACGA
* * * * *
16333363 CAACCTTCGGTCTAGTCTGATCTTAGATTGGGAATGAACTCTGTATTCCTAGACATGGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * ** * * * *
16333428 TCTGTATGCTTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAGCCGGTTGGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAAT
* * * *** * * *
16333493 GCACAAGCCATGGAT-C-AATTTGGTCCC-CCT-CTG-CG-T--GCTTCCGATCCTACTGCCACA
131 GCGCAAGCCAGGGATGCTGA-TCCCTCCCTCCTGCTGTCGATCCGCTGCAGATCCTACTACCACA
** *
16333550 ACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT
195 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT
* * * ***
16333615 CGGCATGTGGGCGCTCAACCGGTCGGAGAGGCAGAATGTGTAAGTCGGAGATCGGTCCGATCCCC
260 CGGCATGCGGGCGCTCAACCGGTCAGAGAGGCAAAATGCACAAGTCGGAGATCGGTCCGATCCCC
* * * *
16333680 CCGTGTGCTATCGATCCTGCTATCG
325 CCGCGTGCTATCGACCCTACTACCG
* * * * * *
16333705 CAACCCTCGGTCCGGTCTAATCTTAGATTGGGAATGAACTCGGCATGCTTAGA-TTGGGGATGAA
1 CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAA
* * * ** *
16333769 CTCCGTATGCCTAAGTCAATCGATGAAACGAGTGTGCGGGCGCTCAGCCTATCGGAGAGGCATAA
65 CTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAA
* * ** * * * *
16333834 TACGAAAGCTGGGGATCAGCTCGGTCCC-CCTCTACATGCTGTCGATCCCGCTGCAGGTCCTGCT
130 TGCGCAAGCCAGGGAT--GCT-GATCCCTCC-CT-CCTGCTGTCGAT-CCGCTGCAGATCCTACT
* * *
16333898 ACCACAACCCTCGGTCCGACTGGTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCG
189 ACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
** * * * *
16333963 CGAAA-CGAGTGTGCGGGCGCTCAGCCGGTCAGAGAGGTAAAATGCACAAG-CTGGGGATTGG-C
254 CGAAATCG-GCATGCGGGCGCTCAACCGGTCAGAGAGGCAAAATGCACAAGTC-GGAGATCGGTC
* * *
16334025 CTGATCCCCCCTGCGTGCTGTTGACCCTACTGCCG
317 C-GATCCCCCC-GCGTGCTATCGACCCTACTACCG
* * * *
16334060 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATCGAATGAAC
1 CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
*
16334125 TCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAAT
*
16334190 GCGCAAGCCAGGGACTGGCCTGATCCCTCCCTCCGTGTTGTCGATCC
131 GCGCAAGCCAGGGA-T-G-CTGATCCCTCCCTCC-TGCTGTCGATCC
16334237 TGTTGCCGCA
Statistics
Matches: 417, Mismatches: 91, Indels: 36
0.77 0.17 0.07
Matches are distributed among these distances:
341 1 0.00
342 113 0.27
345 3 0.01
346 2 0.00
348 2 0.00
349 3 0.01
350 2 0.00
351 1 0.00
353 5 0.01
354 125 0.30
355 154 0.37
356 6 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (349 bp):
CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAAT
GCGCAAGCCAGGGATGCTGATCCCTCCCTCCTGCTGTCGATCCGCTGCAGATCCTACTACCACAA
CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATC
GGCATGCGGGCGCTCAACCGGTCAGAGAGGCAAAATGCACAAGTCGGAGATCGGTCCGATCCCCC
CGCGTGCTATCGACCCTACTACCG
Found at i:16335558 original size:26 final size:26
Alignment explanation
Indices: 16335529--16335579 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16335519 CCGGTTAGAT
16335529 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
16335555 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16335580 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16336046 original size:158 final size:157
Alignment explanation
Indices: 16335706--16336062 Score: 387
Period size: 158 Copynumber: 2.3 Consensus size: 157
16335696 CTACTGTTGC
* * * * * *
16335706 AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCCACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGG-ATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * *
16335771 CGAGCGTTCGGGTGCTGAGCCGTCGGAGAGGCATAATGCGCAAGCTGGGGATGGACCCGATCCCT
65 CGAGCGTACGGGTGCTCAGCCGCCAGAGAGGCATAATGCGCAAGCTGGGGATGGACCCGATCCCT
* * *
16335836 CTCTATGTGCTGTCGGTCCCACTGCCAT
130 CCCTACGTGCTGTCGATCCCACTGCCAT
* ** *
16335864 AACCCTCGGTCTGGAT-GGGGCTTAGACATGGGATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCGGTCTGG-TCCGATCTTAGAC-TGGGATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * *
16335928 ACGGGCGTACGGGTGCTCAGCCGGCCAGAGAGGCATAATGTGCAATCTGGGGATCGG-CTCGATC
64 ACGAGCGTACGGGTGCTCAGCC-GCCAGAGAGGCATAATGCGCAAGCTGGGGAT-GGACCCGATC
*** * *
16335992 CC-CCCTACGTGCTGTCGATCTTGCTGTCGT
127 CCTCCCTACGTGCTGTCGATCCCACTGCCAT
* *
16336022 AACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCC
1 AACCCTCGGTCTGGTCCGATCTTAGACTG-GGATGAACTCC
16336063 GTAAGCTTAG
Statistics
Matches: 163, Mismatches: 30, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 118 0.72
159 40 0.25
160 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (157 bp):
AACCCTCGGTCTGGTCCGATCTTAGACTGGGATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GAGCGTACGGGTGCTCAGCCGCCAGAGAGGCATAATGCGCAAGCTGGGGATGGACCCGATCCCTC
CCTACGTGCTGTCGATCCCACTGCCAT
Found at i:16336086 original size:26 final size:26
Alignment explanation
Indices: 16336042--16336091 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
16336032 CCGGTCCGAT
*
16336042 CTTAGACTGAGAATGAACTCCGTAAG
1 CTTAGACTGAGAATAAACTCCGTAAG
* * *
16336068 CTTAGACTGGGGATAAACTTCGTA
1 CTTAGACTGAGAATAAACTCCGTA
16336092 TGCCTAAGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTAAG
Found at i:16336449 original size:526 final size:514
Alignment explanation
Indices: 16335345--16336467 Score: 1178
Period size: 513 Copynumber: 2.2 Consensus size: 514
16335335 CCGATCCTGA
* * * *
16335345 TGCCACAAACCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCTGGATGGAGCTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
16335409 CACGAAATGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCTGGGGTTTGGCT
66 CACGAAACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCT
* * * *
16335474 CGATCCCCCTTACGTGCTACCGATCCTGCTACCACAACCGTCAGTCCGGTTAGATCTTAGACTGG
131 CGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGGTCAGATCTTAGACTGA
* *
16335539 GAATGAACTCCGTATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
196 GAATGAACTCCGTATACTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
* * * *
16335604 CGTGCGGGCACTCAGCTGGTCGGAGAGGCAGAATGCAAAAGCTGGGGATCGGCCCGATCCCCCCC
261 CATGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCAAAAGCTGGGGATCAGCCCGATCCCCCCC
* * ** * **** * * * *
16335669 TGTGTGCTACCGTTCCTGCTGCTGGTCCTACTGTTGCAACCCTCGGTCTGATCTGATCTTAGACT
326 TGCGTGCTACCGATCCCACTGCTAGTCCTACTACCACAACCCTCAGTCCGAGCTGAGCTTAGACT
* * * * * *
16335734 GGGAATGAACTTCGTATGCCTAAGTCATCCCACGAAACGAGCGTTCGGGTGCTGAGCCGTCGGAG
391 GGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTTCGGGTGCTGACCCGCCGAAG
* * * * * * *
16335799 AGGCATAATGCGCAAGCTGGGGATGGACCCGATCCCTCTCTATGTGCTGTCGGTCCCAC
456 AGGCAGAATGCGAAAGCCGGGGACGGACCAGATCCCTCTCTATGTCCTGTCGATCCCAC
* *
16335858 TGCCATAACCCTCGGTCTGGATGGGGCTTAGACATGGG-ATGAACTCCCTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCTGGATGGAGCTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * ** *
16335922 CATGAAACGGGCGTACGGGTGCTCAGCCGGCCAGAGAGGCATAATGTGCAATCTGGGGATCGGCT
66 CACGAAACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCT
** * ** ** * *
16335987 CGATCCCCCCTACGTGCTGTCGATCTTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGA
131 CGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGGTCAGATCTTAGACTGA
*
16336052 GAATGAACTCCGTA-AGCTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCCACGAAACAA
196 GAATGAACTCCGTATA-CTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACAA
* **
16336116 GCATGCGGACGCTCAGTCGATCGGATAGGCCGGTCGAAGAGGCATAATGCGTAAG-TCGGGGATC
260 GCATGCGG--G--CA--C--TC----A-GCCGGTCGAAGAGGCAGAATGCAAAAGCT-GGGGATC
*
16336180 AGCCCGATCCCCCTCTGCGTGCTACCGATCCCACTG-TCAGTCCTACTACCACAACCCTCAGTCC
311 AGCCCGATCCCCCCCTGCGTGCTACCGATCCCACTGCT-AGTCCTACTACCACAACCCTCAGTCC
* * *
16336244 G-GCTGGGGCTTAGACAT-GGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAATGAACGTAT
375 GAGCT-GAGCTTAGAC-TGGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAACGT-T
* *
16336306 -GGGTGCTTACCCGACCGAAGAGGCAGAATGTGAAAGCCGGGGACCGG-CTCAG-TCCC-CTCTA
436 CGGGTGCTGACCCG-CCGAAGAGGCAGAATGCGAAAGCCGGGGA-CGGAC-CAGATCCCTCTCTA
***
16336367 CT-TCCTGTCGATCTTGC
498 -TGTCCTGTCGATCCCAC
* ** * * *
16336384 TGTCACAACCCTCGGTCCTGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAC
1 TGCCACAACCCTCGGT-CTGGATGGAGCTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAAC
* *
16336447 CCACGAAACGAGCGTTCGGGC
65 CCACGAAACGGGCGTACGGGC
16336468 ACTGAGCCAG
Statistics
Matches: 499, Mismatches: 84, Indels: 41
0.80 0.13 0.07
Matches are distributed among these distances:
512 1 0.00
513 230 0.46
514 2 0.00
515 1 0.00
517 2 0.00
519 1 0.00
521 2 0.00
525 11 0.02
526 210 0.42
527 35 0.07
528 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (514 bp):
TGCCACAACCCTCGGTCTGGATGGAGCTTAGACATGGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCT
CGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCAGTCCGGTCAGATCTTAGACTGA
GAATGAACTCCGTATACTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
CATGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCAAAAGCTGGGGATCAGCCCGATCCCCCCC
TGCGTGCTACCGATCCCACTGCTAGTCCTACTACCACAACCCTCAGTCCGAGCTGAGCTTAGACT
GGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTTCGGGTGCTGACCCGCCGAAG
AGGCAGAATGCGAAAGCCGGGGACGGACCAGATCCCTCTCTATGTCCTGTCGATCCCAC
Found at i:16336762 original size:26 final size:26
Alignment explanation
Indices: 16336726--16336778 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16336716 CCGGTTCAAT
16336726 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
16336752 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
16336778 C
1 C
16336779 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:16336984 original size:26 final size:26
Alignment explanation
Indices: 16336945--16336996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16336935 TCTGGTACGA
16336945 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
16336971 TCTTAGACAT-GGAATGAACTCTGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
16336997 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:16337167 original size:26 final size:26
Alignment explanation
Indices: 16337131--16337183 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16337121 CCGGTCTGAA
**
16337131 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
16337157 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
16337183 C
1 C
16337184 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:16337444 original size:158 final size:158
Alignment explanation
Indices: 16337156--16337499 Score: 401
Period size: 158 Copynumber: 2.2 Consensus size: 158
16337146 AACTTCGTAT
* * * * * *
16337156 GCTTAGACTGGGGATGAACCCCGTATGCCTAAGTCAACCTATGAAATGAGCATGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAA
* * * *
16337221 CTGGTCGGAGAGGTAGAATGCGCAAGTCAAGGATCGGCCCGGTCCACCCTGTATGCTACCAATCC
66 CTGGTCGAAGAGGTAGAATGCGCAAGCCAAGGATCAGCCCGGTCCACCCTGCATGCTACCAATCC
*
16337286 TGCTACCATAACCCTCAGTCTGGCTAGG
131 TGCTACCACAACCCTCAGTCTGGCTAGG
* *
16337314 GCTTAGACAT-GGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAACGGGCATACGGGCTCTC
1 GCTTAGAC-TGGGAATGAAC-CCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTC
* * * *
16337377 AGCTGGTCGAAGAGGTAGAATGCGCAAGCCAGGGATCAGCCCGGTCC-CTCCTGCGTGCTACCGA
64 AACTGGTCGAAGAGGTAGAATGCGCAAGCCAAGGATCAGCCCGGTCCAC-CCTGCATGCTACCAA
* * * *
16337441 TCCTGCTACCACAACCTTCGGT-TCGGTTCA-A
128 TCCTGCTACCACAACCCTCAGTCT-GGCT-AGG
* *
16337472 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACCCCGTATGC
16337500 TTAGACTAGG
Statistics
Matches: 156, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
157 5 0.03
158 146 0.94
159 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAA
CTGGTCGAAGAGGTAGAATGCGCAAGCCAAGGATCAGCCCGGTCCACCCTGCATGCTACCAATCC
TGCTACCACAACCCTCAGTCTGGCTAGG
Found at i:16337514 original size:26 final size:26
Alignment explanation
Indices: 16337473--16337525 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16337463 TCGGTTCAAT
16337473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16337499 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16337525 C
1 C
16337526 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16337687 original size:26 final size:26
Alignment explanation
Indices: 16337658--16337710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16337648 CTGGTTTGAT
*
16337658 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16337684 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16337710 C
1 C
16337711 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16337871 original size:26 final size:26
Alignment explanation
Indices: 16337842--16337894 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16337832 CCGGTCTGAT
* *
16337842 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
* *
16337868 CTTAGACCGGGGATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
16337894 C
1 C
16337895 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:16337886 original size:184 final size:185
Alignment explanation
Indices: 16337314--16337966 Score: 580
Period size: 184 Copynumber: 3.5 Consensus size: 185
16337304 TCTGGCTAGG
* * * * * * *
16337314 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCTCTCAG
1 GCTTAGACAAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * ** * * * ***
16337379 CTGGTCGA-AGAGGTAGAATGCGCAAGCC-AGGGATC-AGCCCGGTCCCT-CCTGCGTGCTACCG
66 -TCGACCAGAGAGACAAAATGCGCAAGCCGA-GGATCGA-CCCGATCCCTCCCTGCGGGCTGTAG
* * * * * * *
16337440 ATCCTGCTACCACAACCTTCGGTTCGGT-TCAATCTTAGACTGGGAATGAACTCCGTAT
128 ATCCTACTGCCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
16337498 GCTTAGACTAGGGATGAACTTCGTATGCATAAGTCAACCCACGAAAGGAGCGTACGTGCACTCAG
1 GCTTAGACAAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * *
16337563 TCGACCGGAGAGGCAAAATGCGTAAGCCGAGGATCGGCCCGATCCCTCTCTGTGGGCTGTAGATC
66 TCGACCAGAGAGACAAAATGCGCAAGCCGAGGATCGACCCGATCCCTCCCTGCGGGCTGTAGATC
* * * * *
16337628 CTGCTGCTGCAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGTAT
131 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * ** *
16337683 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGTGGGCGCTCAG
1 GCTTAGACAAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
** * * * * * *
16337748 TCGGTCAGAGAGACAGAATGCGCAAGCTGAGGATTGATCCGATCCC-CCCTGCGTGCTGTGGATC
66 TCGACCAGAGAGACAAAATGCGCAAGCCGAGGATCGACCCGATCCCTCCCTGCGGGCTGTAGATC
*
16337812 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
131 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
** * * * * * * *
16337867 GCTTAGACCGGGGATGAACTCCATATGCCTAAGTCAACCCATGCAATGAACGTACGGGCGCTCAA
1 GCTTAGACAAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * *
16337932 CCGGCTAGAGAGGCATAATACGCAAGCCGAGGATC
66 TCGACCAGAGAGACAAAATGCGCAAGCCGAGGATC
16337967 AGCTCGGTTT
Statistics
Matches: 375, Mismatches: 89, Indels: 10
0.79 0.19 0.02
Matches are distributed among these distances:
183 3 0.01
184 226 0.60
185 145 0.39
186 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACAAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
TCGACCAGAGAGACAAAATGCGCAAGCCGAGGATCGACCCGATCCCTCCCTGCGGGCTGTAGATC
CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16338567 original size:26 final size:26
Alignment explanation
Indices: 16338527--16338577 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16338517 CGATCTGATC
16338527 TTAGAATGGGAATGAACTCCGTATGG
1 TTAGAATGGGAATGAACTCCGTATGG
* *
16338553 TTAGACTGGGGATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
16338578 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGG
Found at i:16338933 original size:26 final size:26
Alignment explanation
Indices: 16338895--16338966 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
16338885 CTGGTCTGAT
16338895 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
16338921 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
16338947 CTTAGACACGGAATGAACTC
1 CTTAGACATGGAATGAACTC
16338967 TGTATGCCTA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16339142 original size:26 final size:26
Alignment explanation
Indices: 16339106--16339158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16339096 CCAATCTGAT
*
16339106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16339132 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16339158 C
1 C
16339159 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16339635 original size:26 final size:26
Alignment explanation
Indices: 16339606--16339658 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16339596 CCGGTTCGAT
16339606 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16339632 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16339658 C
1 C
16339659 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16339890 original size:500 final size:501
Alignment explanation
Indices: 16338946--16339910 Score: 1307
Period size: 500 Copynumber: 1.9 Consensus size: 501
16338936 AACTCCATAT
** * * *
16338946 GCTTAGACACGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGACCGTGCGGGCACTCAG
1 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGGGCGGGCACTCAA
* * * ** **
16339011 TCAGCCAGAGAGGCAGAATGTGCAAGCCAGGGACTGACTCGATCCCCTCATGTGTGCTGTCGATC
66 CCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGACAGACTCGATCCCCTCATGCATGCTACCGATC
* *
16339076 CTACTGCCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
131 CTACTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * ** *
16339141 GGGATAAACTCCGTATGCCTAAGTCAACCCACGGAACGAGTGTGCGGGTGCTAAATCGATCGGAG
196 GGGATAAACTCCGTATGCCTAAGTCAAACCACGAAACGAACGTGCGGGCGCTAAATCGATCGGAG
* * * *
16339206 AGACAGAATGCGAAAGTCGAGGATTGGCCCAGTTCCTCCTGCAAGCTGTCGATCTTGCTGTCGCA
261 AGACAGAATGCGAAAGTCGAGGATCGGCCCAGTTCCCCCTGCAAGCTGTCGATCCTACTGTCGCA
* *
16339271 ACCGTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGACAACCCATGAAAC
326 ACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGACAACCCACGAAAC
* * * * *
16339336 GGGCGTATGGGCTCTCAACCGGTCGGAGACGCAAAATGCGTAAGCCGGGGATCGGCCCGGTCCC-
391 GGGCGTACGGGCTCTCAACCGGTCGAAGACGCAAAATGCGCAAGCCGAGGATCGGCCCGATCCCT
*
16339400 CCTGCTTGCTGTCGATCTTGTTGCAATAACCCTTGGTCTGGTTGGG
456 CCTGCGTGCTGTCGATCTTGTTGCAATAACCCTTGGTCTGGTTGGG
* ** *
16339446 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGGGCGGGCTCTCAA
1 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGGGCGGGCACTCAA
* * * * *
16339511 CCGATCGA-AGAGGCAGAATGCGCAAGCCGGGGATCAG-CTCCGGT-CCCTCCTGCATGCTACCG
66 CC-AGCCAGAGAGGCAGAATGCGCAAGCCAGGGA-CAGACT-CGATCCCCTCATGCATGCTACCG
* * **
16339573 ATCCTGCTACCGCAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
128 ATCCTACTACCGCAACCCTCGATCCAATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
16339637 ACTAGGGATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAACGTGCGGGCGCTGAATC-AGT
192 ACTAGGGATAAACTCCGTATGCCTAAGTCAAACCACGAAACGAACGTGCGGGCGCTAAATCGA-T
* * * *
16339701 CGGAGAGGCAGAATGCGGAAGTCGGGGATCGGCCCAG-TCCGCCCTGCATGCTGTCGATCCTACT
256 CGGAGAGACAGAATGCGAAAGTCGAGGATCGGCCCAGTTCC-CCCTGCAAGCTGTCGATCCTACT
*
16339765 GTCGCAACCCTCGGT-TCGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCC
320 GTCGCAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGACAACCC
* * * * *
16339829 ACGAAATGGGCGTGCGGGCTCTCAGCCGGTCGAAGATGCAGAATGCGCAAGCCGAGGATCGGCCC
384 ACGAAACGGGCGTACGGGCTCTCAACCGGTCGAAGACGCAAAATGCGCAAGCCGAGGATCGGCCC
16339894 GATCCCTCCTGCGTGCT
449 GATCCCTCCTGCGTGCT
16339911 ACCGATACTG
Statistics
Matches: 401, Mismatches: 56, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
499 6 0.01
500 378 0.94
501 17 0.04
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (501 bp):
GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGACCGGGCGGGCACTCAA
CCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGACAGACTCGATCCCCTCATGCATGCTACCGATC
CTACTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
GGGATAAACTCCGTATGCCTAAGTCAAACCACGAAACGAACGTGCGGGCGCTAAATCGATCGGAG
AGACAGAATGCGAAAGTCGAGGATCGGCCCAGTTCCCCCTGCAAGCTGTCGATCCTACTGTCGCA
ACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGACAACCCACGAAAC
GGGCGTACGGGCTCTCAACCGGTCGAAGACGCAAAATGCGCAAGCCGAGGATCGGCCCGATCCCT
CCTGCGTGCTGTCGATCTTGTTGCAATAACCCTTGGTCTGGTTGGG
Found at i:16339929 original size:158 final size:158
Alignment explanation
Indices: 16339631--16339974 Score: 347
Period size: 158 Copynumber: 2.2 Consensus size: 158
16339621 AACTCCGTAT
* * *
16339631 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAACGTGCGGGCGCTGAA
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAACGTGCGGGCGCTCAA
* * * * * ** *
16339696 TCAGTCGGAGAGGCAGAATGCGGAAGTCGGGGATCGGCCCAGTCCGCCCTGCATGCTGTCGATCC
66 CCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCGCCCTGCATGCTACCGATAC
**
16339761 TACTGTCGCAACCCTCGGTTCGACTGGG
131 TACTACCGCAACCCTCGGTTCGACTGGG
* * ** *
16339789 GCTTAGAC-ATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCTCTC
1 GCTTAGACTA-GGAATGAACTC-CGTATGCCTAAGCCAAACCACGAAACGAACGTGCGGGCGCTC
* * * *
16339852 AGCCGGTCGAAGATGCAGAATGCGCAAGCCGAGGATCGGCCC-GATCC-CTCCTGCGTGCTACCG
64 AACCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAG-TCCGC-CCTGCATGCTACCG
* * * * *
16339915 ATACTGCTACCGCAACCCTTGGTTCTG-TTCGA
127 ATACTACTACCGCAACCCTCGGTTC-GACTGGG
* *
16339947 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCGTATGC
16339975 TTAGACTAGG
Statistics
Matches: 150, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.03
158 144 0.96
159 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAACGTGCGGGCGCTCAA
CCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCGCCCTGCATGCTACCGATAC
TACTACCGCAACCCTCGGTTCGACTGGG
Found at i:16339952 original size:342 final size:340
Alignment explanation
Indices: 16339357--16340027 Score: 1015
Period size: 342 Copynumber: 2.0 Consensus size: 340
16339347 CTCTCAACCG
* * * *
16339357 GTCGGAGACGCAAAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTGCTTGCTGTCGATCTTGTT
1 GTCGGAGACGCAAAATGCGGAAGCCGGGGATCGGCCCAGTCCCCCTGCATGCTGTCGATCTTGTC
* **
16339422 GCAATAACCCTTGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
66 GC-A-AACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
*
16339487 CGAAACGGGCGGGCGGGCTCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCC
129 CGAAACGGGCGGGCGGGCTCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCC
* *
16339552 GGTCCCTCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGG
194 GATCCCTCCTGCATGCTACCGATACTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGG
16339617 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAAC
259 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAAC
16339682 GTGCGGGCGCTGAATCA
324 GTGCGGGCGCTGAATCA
* * *
16339699 GTCGGAGAGGCAGAATGCGGAAGTCGGGGATCGGCCCAGTCCGCCCTGCATGCTGTCGATCCTAC
1 GTCGGAGACGCAAAATGCGGAAGCCGGGGATCGGCCCAGTCC-CCCTGCATGCTGTCGAT-CT--
*
16339764 TGTCGC-AACCCTCGGT-TCGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAAC
62 TGTCGCAAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * *
16339827 CCACGAAATGGGCGTGCGGGCTCTCAGCCGGTCGAAGATGCAGAATGCGCAAGCCGAGGATCGGC
126 CCACGAAACGGGCGGGCGGGCTCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGC
* * * *
16339892 -CCGATCCCTCCTGCGTGCTACCGATACTGCTACCGCAACCCTTGGTTCTGTTCGATCTTAGACT
191 TCCGATCCCTCCTGCATGCTACCGATACTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACT
* *
16339956 GGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAGG
256 GGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAACCACGAAACG
*
16340021 AGCGTGC
321 AACGTGC
16340028 ATGCGCTCAG
Statistics
Matches: 297, Mismatches: 27, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
342 165 0.56
343 125 0.42
344 2 0.01
346 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (340 bp):
GTCGGAGACGCAAAATGCGGAAGCCGGGGATCGGCCCAGTCCCCCTGCATGCTGTCGATCTTGTC
GCAAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACGGGCGGGCGGGCTCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCCGA
TCCCTCCTGCATGCTACCGATACTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAACGT
GCGGGCGCTGAATCA
Found at i:16339989 original size:26 final size:26
Alignment explanation
Indices: 16339948--16340000 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16339938 TCTGTTCGAT
16339948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16339974 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16340000 C
1 C
16340001 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16341050 original size:26 final size:26
Alignment explanation
Indices: 16341010--16341060 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16341000 CAGTCTGATC
16341010 TTAGAATGGGAATGAACTCCGTATGG
1 TTAGAATGGGAATGAACTCCGTATGG
* *
16341036 TTAGACTGGGGATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
16341061 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGG
Found at i:16341223 original size:26 final size:25
Alignment explanation
Indices: 16341194--16341245 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
16341184 CCAGTCCGAT
16341194 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACT-AGAATGAACTCCGTATG
* *
16341220 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
16341245 C
1 C
16341246 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:16341349 original size:184 final size:182
Alignment explanation
Indices: 16340870--16341511 Score: 592
Period size: 184 Copynumber: 3.4 Consensus size: 182
16340860 ATGAAATAAG
* * * *
16340870 CTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTAC-GG-GCTCAACCGACCGAAGAGGCAGAA
1 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACCGAA-AGGCAGAA
* * * * ** * *
16340933 TGTGCAAGTTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTATCACAACCCTCT-
65 TGCGCAAGCTGGGGATCGACCCGATCCACCCTGCGTGCTGTCGATCCTGTTGTCGCAACCC-CTG
* * *
16340997 GTACAGTCTGATCTTAGAATGGGAATGAACTCCGTATGGTTAGACTGGGGATGAA
129 GTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAA
* * * * * * * * *
16341052 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCTGACCAGAGAGGCATAA
1 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACC-GAAAGGCAGAA
* * **
16341117 TGCGTAAGCTGGGGAT-AAGCCCGATCCACCTCTGCGTGCTACCGATCCTGTTGTCGCAACCCCT
65 TGCGCAAGCTGGGGATCGA-CCCGATCCACC-CTGCGTGCTGTCGATCCTGTTGTCGCAACCCCT
* **
16341181 GGTCCAGTCCGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTGGGATGAA
128 GGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAA
* *
16341236 CTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTACGGGCGCTCAACCGACCGGAAAGGCAGAA
1 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACC-GAAAGGCAGAA
* ** * *
16341301 TGCACAAGCCAGGGATCGACCCGATCCTTCCCTGCGAGCTGTCGATCCTACTGTTGGCCCTGCTG
65 TGCGCAAGCTGGGGATCGACCCGATCC-ACCCTGCGTGCTGTCGAT-C--CTGTT-G---T-C-G
** *
16341366 TCGTAA-CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
120 -C--AACCCCT-GGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAT
16341430 GAA
180 GAA
* * * ** * *
16341433 CTCCGTATGCCTAAGCCAACCCATAAAACGATCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAA
1 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACC-GAAAGGCAGAA
* *
16341498 TGAGCAAGCCGGGG
65 TGCGCAAGCTGGGG
16341512 GTCGGCCGAT
Statistics
Matches: 374, Mismatches: 64, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
182 33 0.09
183 3 0.01
184 136 0.36
185 71 0.19
187 5 0.01
188 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
194 1 0.00
195 4 0.01
196 43 0.11
197 74 0.20
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (182 bp):
CTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACCGAAAGGCAGAAT
GCGCAAGCTGGGGATCGACCCGATCCACCCTGCGTGCTGTCGATCCTGTTGTCGCAACCCCTGGT
CCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAA
Found at i:16341428 original size:26 final size:26
Alignment explanation
Indices: 16341390--16341442 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16341380 CTGGTCTGAT
16341390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16341416 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16341442 C
1 C
16341443 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16341888 original size:26 final size:26
Alignment explanation
Indices: 16341847--16341899 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16341837 TCGATTTGAT
16341847 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16341873 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
16341899 C
1 C
16341900 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16342258 original size:26 final size:26
Alignment explanation
Indices: 16342229--16342279 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16342219 CGGTCTGATC
*
16342229 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
16342255 TTAGGCTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
16342280 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:16342354 original size:184 final size:184
Alignment explanation
Indices: 16342024--16342365 Score: 418
Period size: 184 Copynumber: 1.9 Consensus size: 184
16342014 CTGCTGCCAC
** * *
16342024 AACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAGTTCCTTATGCTTAGACATTAAATGAACT
1 AACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACT
* * * *
16342089 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAATCGATCAAAGAGGCAGAATG
66 CCATATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAACCGACCAAAGAGGCAGAATG
* * *
16342154 CGTAAGACGGGGATCAGTCTGATCCCCCCTGCGTGCTGTCGATCCTACTACCGT
131 CGCAAGACGAGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTACTACCGT
* * * * **
16342208 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTTTAGGC-TGGGGATGAAC
1 AACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GAAATGAAC
* * * * * * *
16342272 TCCATATGCCTAAGTCAACCCATGAAATGAACGTGCGGGTGCTCAACC-AGCCGAAGAGGCATAA
65 TCCATATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAACCGA-CCAAAGAGGCAGAA
* *
16342336 TGCGCAAGCCGAGGATCAGCCTGGTCCCCC
129 TGCGCAAGACGAGGATCAGCCTGATCCCCC
16342366 TCTGTGTGTT
Statistics
Matches: 130, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
183 2 0.02
184 128 0.98
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.21
Consensus pattern (184 bp):
AACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACT
CCATATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAACCGACCAAAGAGGCAGAATG
CGCAAGACGAGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTACTACCGT
Found at i:16342407 original size:381 final size:380
Alignment explanation
Indices: 16341689--16342418 Score: 884
Period size: 381 Copynumber: 1.9 Consensus size: 380
16341679 TTCGGCTAGG
* * * * *
16341689 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGGGCGTCCGGGCTCTCAG
1 GCTTAGACATGAAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * *
16341754 CCGGTCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTGCATGCTACCGATCCT
66 CCGATCAAAGAGGCAGAATGCACAAGACGAGGATCAGCCCGATCCCCCTGCATGCTACCGATCCT
* * *
16341819 ACTACCGTAACCCTCGGTTCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGG
131 ACTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
** * *
16341884 GATGAACTCTGTATGCCTAAGTCAACCTACGAAACAAGCGTGGGTGCACACAGCCGATCGAAGAG
196 GATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGGGTGCACACAGCCGACCGAAGAG
* * ** * *
16341949 GCATAATGTGCAAGTCGGCGATCAGCTCGGTCCCCCTCTACATGCTGTCGATCCTGTTGCTGGTC
261 GCATAATGCGCAAGCCGGCGATCAGCTCGGTCCCCCTCTACATGCTACCGATCCTGCTGCCGGTC
*
16342014 CTGCTGCCACAACCC-TCAGTCCGGTCTAATCTTAGACTGGGAATGAGTTCCTTAT
326 CTGCTACCACAACCCTTC-GTCCGGTCTAATCTTAGACTGGGAATGAGTTCCTTAT
*
16342069 GCTTAGACATTAAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGAAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* ** * * * * **
16342133 ATCGATCAAAGAGGCAGAATGCGTAAGACGGGGATCAGTCTGATCCCCCCTGCGTGCTGTCGATC
65 ACCGATCAAAGAGGCAGAATGCACAAGACGAGGATCAGCCCGAT-CCCCCTGCATGCTACCGATC
* * * *
16342198 CTACTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTTTAGGCTG
129 CTACTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * *
16342263 GGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAA-CGTGCGGGTGCTCA-A-CC-AGCC
194 GGGATGAACTCCATATGCCTAAGTCAACCCACGAAA-CAAGCGT--GGGTGCACACAGCCGA-CC
*** * *
16342324 GAAGAGGCATAATGCGCAAGCCGAG-GATCAGC-CTGGTCCCCCTCTGTGTGTTACCG-TTCTCG
255 GAAGAGGCATAATGCGCAAGCCG-GCGATCAGCTC-GGTCCCCCTCTACATGCTACCGATCCT-G
*
16342386 CTGCCGGTCTTGCTACCACAACCCTTCGTCCGG
317 CTGCCGGTCCTGCTACCACAACCCTTCGTCCGG
16342419 CTGGGGCTTC
Statistics
Matches: 293, Mismatches: 47, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
379 1 0.00
380 94 0.32
381 184 0.63
382 6 0.02
383 8 0.03
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (380 bp):
GCTTAGACATGAAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCGATCAAAGAGGCAGAATGCACAAGACGAGGATCAGCCCGATCCCCCTGCATGCTACCGATCCT
ACTACCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
GATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGGGTGCACACAGCCGACCGAAGAG
GCATAATGCGCAAGCCGGCGATCAGCTCGGTCCCCCTCTACATGCTACCGATCCTGCTGCCGGTC
CTGCTACCACAACCCTTCGTCCGGTCTAATCTTAGACTGGGAATGAGTTCCTTAT
Found at i:16342717 original size:549 final size:551
Alignment explanation
Indices: 16342011--16343164 Score: 1476
Period size: 549 Copynumber: 2.1 Consensus size: 551
16342001 CCTGTTGCTG
* * * ** **
16342011 GTCCTGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAGTTCCTTATGCTTAGA
1 GTCCTGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCACATGCTTAGA
* * * *
16342076 CATTAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAATCGATCA
66 CATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGATCA
* * * *
16342141 AAGAGGCAGAATGCGTAAGACGGGGATC-AGTCTGATCCCCCCTGCGTGCTGTCGATCCTACTAC
131 AAGAGGCAGAATGCGCAAGACGGGGATCGA-TCCGATCCCCCCTACATGCTGTCGATCCTACTAC
* * * *
16342205 CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGTTTAGGCTGGGGATGA
195 CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
* * *
16342270 ACTCCATATGCCTAAGTCAACCCATGAAATGAACGTGCGGGTGCTCAACC-AGCCGAAGAGGCAT
260 ACTCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAACCGA-CCGAAGAGGCAT
* *** * * *
16342334 AATGCGCAAGCCGAGGATCAGCCTGGTCCCCCTCTGTGTGTTACCGTT-CTCGCTGCCGGTCTTG
324 AATGCGCAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTACCGTTCCT-GCTGCCGGTCCTG
* **
16342398 CTACCACAACCCTTC-GTCCGGCTGGGGCTTCGACATGGAATGAACTCCATATGCCTAAGCTGAC
388 CTACCACAACCC-TCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * *
16342462 CTACGAAATGAGCGTGCGGGTGCTCAGCC-GGCCGAGAGGCAGAATGCGCAAGCCAACGATCGAC
452 CCACAAAATGAGCGTGCGGGTGCTCAGCCAAGCCGAGAGGCAGAATGCGCAAGCCAACGATCAAC
* *
16342526 CCGAT-CCCCCTGCGTGCTGCCGATCCTACTACTG
517 CAGATCCCCCCTGCGTGCTGCCGATCCTACTACTA
* *
16342560 GTCCTGCTACTGTAACCCTCGGTCCGGTCCT-ATCTTAGACTGGGAATGAACTCCACATGCTTAG
1 GTCCTGCTACCGCAACCCTCGGTCCGGT-CTAATCTTAGACTGGGAATGAACTCCACATGCTTAG
* * * * * * * *
16342624 ACATGGAATGAACTTCGTATACCTAAGGCAACCCACGAAACGAGCATGCGGGTGTTCAGCCGGTC
65 ACATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGATC
* * * * **
16342689 GAAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGATTCCCTCTACATGCTGTCGATCCTACTGT
130 AAAGAGGCAGAATGCGCAAGACGGGGATCGATCCGATCCCCCCTACATGCTGTCGATCCTACTAC
16342754 CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
195 CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
*
16342819 ACTCCATATGCCTAAGTTAACCCACGAAATGAACGTACGGGCGCTCAACCGACCGAAGAGGCATA
260 ACTCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAACCGACCGAAGAGGCATA
* ** *
16342884 ATGCGTAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTGTCGTTCCTGTTGCCGGTCCTGCT
325 ATGCGCAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTACCGTTCCTGCTGCCGGTCCTGCT
* * *
16342949 GCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
390 ACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
* * * * * * * * *
16343014 CAAAATGAGTGTGCGGGTGCTCAGCCAATCGGAGAGGTAGAATGTGTAAGTCGAGGATCAACCAG
455 CAAAATGAGCGTGCGGGTGCTCAGCCAAGCCGAGAGGCAGAATGCGCAAGCCAACGATCAACCAG
* * * * *
16343079 GTCCCCCCTGTGTGCTGGCGATCCTGCTGCTA
520 ATCCCCCCTGCGTGCTGCCGATCCTACTACTA
* * *** *
16343111 GTCTTGCTGCCGCAACCCTCGGTCATATCTGATCTTAGACTGGGAATGAACTCC
1 GTCCTGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCC
16343165 GTATGCCTAA
Statistics
Matches: 514, Mismatches: 83, Indels: 14
0.84 0.14 0.02
Matches are distributed among these distances:
548 2 0.00
549 408 0.79
550 36 0.07
551 68 0.13
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (551 bp):
GTCCTGCTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCACATGCTTAGA
CATGAAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGATCA
AAGAGGCAGAATGCGCAAGACGGGGATCGATCCGATCCCCCCTACATGCTGTCGATCCTACTACC
GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
CTCCATATGCCTAAGTCAACCCACGAAATGAACGTACGGGCGCTCAACCGACCGAAGAGGCATAA
TGCGCAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTACCGTTCCTGCTGCCGGTCCTGCTA
CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
AAAATGAGCGTGCGGGTGCTCAGCCAAGCCGAGAGGCAGAATGCGCAAGCCAACGATCAACCAGA
TCCCCCCTGCGTGCTGCCGATCCTACTACTA
Found at i:16342813 original size:26 final size:26
Alignment explanation
Indices: 16342777--16342829 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16342767 CCGGTCCGAT
16342777 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16342803 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16342829 C
1 C
16342830 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16343071 original size:171 final size:171
Alignment explanation
Indices: 16342802--16343269 Score: 514
Period size: 170 Copynumber: 2.7 Consensus size: 171
16342792 AACTCCATAT
* * * * * * * *
16342802 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTTAACCCACGAAATGAACGTACGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAG
* * * *
16342867 CCGACCGAAGAGGCATAATGCGTAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTGTCGTTC
66 CCGATCGGAGAGGAATAATGCGTAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTGTCGATC
* * * *
16342932 CTGTTGCCGGTCCTGCTGCCACAACCCTCAGTC-TGGCTGGG
131 CTGCTGCCAGTCCTGCTGCCACAACCCTCAGTCATAGCT-GA
* *
16342973 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCA
* * * * * * * *
16343037 GCCAATCGGAGAGGTAGAATGTGTAAGTCGAGGATCAA--CCAGGTCCCCC-CTGTGTGCTGGCG
65 GCCGATCGGAGAGGAATAATGCGTAAGCCGAGGAT-AAGCCCA-ATCCCCCTCTGCGTGCTGTCG
* * * * *
16343099 ATCCTGCTGCTAGTCTTGCTGCCGCAACCCTCGGTCATATCTGA
128 ATCCTGCTGCCAGTCCTGCTGCCACAACCCTCAGTCATAGCTGA
* *
16343143 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAG
* * * * * *
16343208 CTGATCGGAGAGGAATAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTCTGCATGCTGTCG
66 CCGATCGGAGAGGAATAATGCGTAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTGTCG
16343270 GTCTCGCTAC
Statistics
Matches: 241, Mismatches: 48, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
169 2 0.01
170 135 0.56
171 101 0.42
172 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAG
CCGATCGGAGAGGAATAATGCGTAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTGTCGATC
CTGCTGCCAGTCCTGCTGCCACAACCCTCAGTCATAGCTGA
Found at i:16343490 original size:26 final size:26
Alignment explanation
Indices: 16343461--16343511 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16343451 TGGTCCGATT
16343461 TTAGAATCGGAATGAACTCCGTATGG
1 TTAGAATCGGAATGAACTCCGTATGG
* * * *
16343487 TTAGACTGGGGATGCACTCCGTATG
1 TTAGAATCGGAATGAACTCCGTATG
16343512 CCTAAGTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGAATCGGAATGAACTCCGTATGG
Found at i:16343687 original size:26 final size:26
Alignment explanation
Indices: 16343658--16343710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16343648 CCGGTCCGAT
16343658 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16343684 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16343710 C
1 C
16343711 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16344086 original size:25 final size:26
Alignment explanation
Indices: 16344040--16344091 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16344030 CCGGTCCGAT
16344040 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16344066 CTTAGATTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16344091 C
1 C
16344092 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16344417 original size:26 final size:26
Alignment explanation
Indices: 16344381--16344433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16344371 CCGATTTGAT
*
16344381 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16344407 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16344433 C
1 C
16344434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16345322 original size:26 final size:26
Alignment explanation
Indices: 16345284--16345336 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16345274 GGCTCAAAAT
16345284 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
16345310 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
16345336 C
1 C
16345337 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:16345616 original size:159 final size:159
Alignment explanation
Indices: 16345310--16345779 Score: 397
Period size: 159 Copynumber: 3.0 Consensus size: 159
16345300 ACTCCGTATG
* *
16345310 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGAAGCTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCATAAGCCAACCCACGAAAAGAGCGTGCGGAAGCTCAGT
* * *
16345375 CGACCGGAGAGGTAGAATGCGCAAGCTGAGGATCAGCCCAGTCCCCTCCTATGTCTTGCCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCAGTCCCCTCCTACGTCTTGCCGATCC
* **
16345440 TGCTGTCGTAACCCTCAGTCTGGTCTAAT
131 TGCTGCCACAACCCTCAGTCTGGTCTAAT
* * * *
16345469 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACTCACGAAAAGAGCGTGCCGGCA-CTGA
1 CTTAGACAT-GGAATGAACTTCGTATGCATAAGCCAACCCACGAAAAGAGCGTG-CGGAAGCTCA
* * * *
16345532 GTCGGCCGAAGAGGCATAATGCGCAAG-TCGGGGATC-GACCCAGTCCCC-CTCTGCGTGCTAT-
64 GTCGACCGAAGAGGCAGAATGCGCAAGCT-GAGGATCAG-CCCAGTCCCCTC-CTACGT-CT-TG
* * * ***
16345593 CCG-T-CTCGCTGCCACAACTCTCAGTC-CGACTGGGG
124 CCGATCCT-GCTGCCACAACCCTCAGTCTGGTCT-AAT
* * * * * * * * ** *
16345628 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCATAAGCCAACCCACGAAAAGAGCGTGCGGAAGCTCAGT
* * * * * *
16345693 CGACCGGAGAGGCAGAATGCGTAAGCT-AGGGTCAGCCCGGTCCCC-CCTGCGTGC-TGCCAATC
66 CGACCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCAGTCCCCTCCTACGT-CTTGCCGATC
* *
16345755 CTGCTGCCGCAACCCTCGGTCTGGT
130 CTGCTGCCACAACCCTCAGTCTGGT
16345780 TCGATCTTAG
Statistics
Matches: 245, Mismatches: 49, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 25 0.10
158 29 0.12
159 176 0.72
160 11 0.04
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTTCGTATGCATAAGCCAACCCACGAAAAGAGCGTGCGGAAGCTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCAGTCCCCTCCTACGTCTTGCCGATCC
TGCTGCCACAACCCTCAGTCTGGTCTAAT
Found at i:16346203 original size:26 final size:26
Alignment explanation
Indices: 16346152--16346204 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16346142 CCGGTCTGAT
*
16346152 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCATATG
16346178 CTTAGAC-ATGGAATGAAC-TCTATATG
1 CTTAGACTA-GGAATGAACTTC-ATATG
16346204 C
1 C
16346205 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCATATG
Found at i:16346538 original size:159 final size:158
Alignment explanation
Indices: 16346177--16346623 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 158
16346167 AACTTCGTAT
* *
16346177 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCTGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*** ** * *
16346242 CCGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
** * *
16346307 TGCTACCGCAACCCTCAGTCTGATCCAA
131 CACTACCACAACCCTCAGTCGGATCCAA
* * * * * *
16346335 TCTTAGAC-TGGGAATGAACTCCGTATGCCTATGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
16346399 GCCAACCGGAGAGGCATAATTTGCAAGCCAGGGATCGACCTGGTCTCCCTCTTCGTGCTATTGAT
65 GCCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATC-CCCCCTGCGTGCTATCGAT
* * * ***
16346464 CCCACTGCCACAACCCTCGGTCCGGCT-GGG
129 CCCACTACCACAACCCTCAGT-CGGATCCAA
* * * * * *
16346494 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
16346559 CCGACTGGAGAGGCAGAATGCACAAGCC-GAGGATC-AGCCAGATCCCCCCTACGTGCTGTCGAT
66 CCAACCGGAGAGGCAAAATGCGCAAGCCAG-GGATCGA-CCCGATCCCCCCTGCGTGCTATCGAT
16346622 CC
129 CC
16346624 TGCTGTCGCA
Statistics
Matches: 227, Mismatches: 56, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 107 0.47
159 115 0.51
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
CACTACCACAACCCTCAGTCGGATCCAA
Done.