Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 136 of 402
Found at i:16347625 original size:157 final size:156
Alignment explanation
Indices: 16347193--16347685 Score: 451
Period size: 157 Copynumber: 3.1 Consensus size: 156
16347183 AACTCCGTAT
* * * * *
16347193 GCTTAGACGTGCAATGAACTCTGTATGCCTAAGCCAACCTACGAAATGAGTGTGCGGGCGCTTAG
1 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGC-GGCGCTCAG
* * * * *
16347258 CCGGCCGAAGAGGCAGAATGGGTAAGCTGGGGATCGGCCCAGTCCCCCCCTGCGTGCTGTCGATC
65 CCGGCCGAAGAGGCAGTATGCGCAAGCCGGGGATC-ACCCAGT-CCCCCCTGCGTGCTGTCGATC
* ** *
16347323 CTGCTGTCACAACCCTCGGTCCGGTTCGA
128 CTGCTGCCACAACCCTCGAACCGGCTCGA
* * * * * *
16347352 TCTTAG-TGTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGCGCGTGCGGCGCTGAG
1 GCTTAGACGT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGCGCTCAG
* * * * *
16347416 CTGGCCGAAGAGGCA-TAATGCGCAAGTCGGGGATGACCC-GATCCCCTTCTGCGTGCTGTCGGT
65 CCGGCCGAAGAGGCAGT-ATGCGCAAGCCGGGGATCACCCAG-TCCCC-CCTGCGTGCTGTCGAT
* * *
16347479 -CTCGCTGCCACAACCCTC-AACTGGCTGGG
127 CCT-GCTGCCACAACCCTCGAACCGGCTCGA
* ** *
16347508 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGC-GGCGCTCAG
* * * *
16347573 CCGACCGGAGAGGTAGTATGCGCAAGCCGGGGATCATCCCAGTCCCCCCTGCGTGCTGCCGATCC
65 CCGGCCGAAGAGGCAGTATGCGCAAGCCGGGGATCA-CCCAGTCCCCCCTGCGTGCTGTCGATCC
* ** **
16347638 TGCTACTGCAACCCTCGGTCCGG-TCTGA
129 TGCTGCCACAACCCTCGAACCGGCTC-GA
*
16347666 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACGT-GGAATGAACT
16347686 TCATATCCTT
Statistics
Matches: 266, Mismatches: 54, Indels: 29
0.76 0.15 0.08
Matches are distributed among these distances:
156 57 0.21
157 96 0.36
158 69 0.26
159 44 0.17
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGCGCTCAGC
CGGCCGAAGAGGCAGTATGCGCAAGCCGGGGATCACCCAGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGAACCGGCTCGA
Found at i:16349003 original size:171 final size:171
Alignment explanation
Indices: 16348718--16349048 Score: 400
Period size: 171 Copynumber: 1.9 Consensus size: 171
16348708 AACTCCGTAT
* * *
16348718 GCTTAGACTAGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGACCGATTAG
1 GCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGACCGATCAG
* * * * *
16348783 CCGACCGGAGAGGCATAATGCACATGTTGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAAT-
66 CCGACCGAAAAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAATC
* *
16348847 CTCGCT-GTCGGTCTTTCCGCCACAACCCTCGGTCCAACTGGG
131 CT-GCTACT-GGTCTTGCCGCCACAACCCTCGGTCCAACTGGG
* * * ** *
16348889 GCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGACCGATCA
* * * * *
16348953 GCC-AGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCTCTCTGCGTGCTGCCGA
65 GCCGA-CCGAAAAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAA
*
16349017 TCCTGCTACTGGTCTTGCTGCCACAACCCTCG
129 TCCTGCTACTGGTCTTGCCGCCACAACCCTCG
16349049 ATCCGGTTCG
Statistics
Matches: 134, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
170 2 0.01
171 129 0.96
172 3 0.02
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (171 bp):
GCTTAGACTAGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGACCGATCAG
CCGACCGAAAAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAATC
CTGCTACTGGTCTTGCCGCCACAACCCTCGGTCCAACTGGG
Found at i:16349067 original size:171 final size:171
Alignment explanation
Indices: 16348718--16349086 Score: 397
Period size: 171 Copynumber: 2.2 Consensus size: 171
16348708 AACTCCGTAT
* * *
16348718 GCTTAGACTAGGG-ATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGACCGATTA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCGATCA
* * * * *
16348782 GCCGACCGGAGAGGCATAATGCACATGTTGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAAT
65 GCCGACCGAAAAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAAT
* * * * *
16348847 CTCGCTGTCGGTCTTTCCGCCACAACCCTCGGTCCAACTGGG
130 CTCGCTCTCGGTCTTGCCGCCACAACCCTCGATCCAACTCGA
* * ** *
16348889 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCGATCA
* * * * *
16348953 GCC-AGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCTCTCTGCGTGCTGCCGA
65 GCCGA-CCGAAAAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAA
* ***
16349017 TC-CTGCTACT-GGTCTTGCTGCCACAACCCTCGATCCGGTTCGA
129 TCTC-GCT-CTCGGTCTTGCCGCCACAACCCTCGATCCAACTCGA
* *
16349060 TCTTAGACTGGGGATGAACTCCGTATG
1 GCTTAGACTGGGAATGAACTCCGTATG
16349087 GTTAGACATG
Statistics
Matches: 162, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
170 5 0.03
171 155 0.96
172 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGACCGATCAG
CCGACCGAAAAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCTCTCTGCATGCTGCCAATC
TCGCTCTCGGTCTTGCCGCCACAACCCTCGATCCAACTCGA
Found at i:16349599 original size:26 final size:26
Alignment explanation
Indices: 16349563--16349615 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16349553 CTGGTCCAAA
16349563 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
16349589 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16349615 C
1 C
16349616 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16350324 original size:26 final size:26
Alignment explanation
Indices: 16350287--16350338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16350277 GCTCAAAATA
16350287 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16350313 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16350339 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16350771 original size:158 final size:156
Alignment explanation
Indices: 16350311--16350811 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 156
16350301 AACTCCGTAT
** *
16350311 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGG-CGCTCAG
* * * * * * *
16350376 CCGATCGGAGAGGTAGATTGCGTAAGTCAGAGATCGGGCTGATCCCCCCTACGTGCTGTCAATCC
65 CCGATCGAAGAGGCAGAATGCGTAAGTCAGAGATCAGCCTGATCCCCCCTACGTGCTG-CCATCT
* * * *
16350441 TACTACTGCAA-CCTCAGTCCGTTCTGA
129 TGCTGCCGCAACCCTCAGTCCGTTCGGA
* * * * * * *
16350468 TCTTAGAC-TAGGAATGAACTTCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-AGGCGCTCA
* * * *
16350532 GCTGATCGAAAAGGCATAATGC-AAAGTCA-ACGATCAGCCCTG-TCCCCCTCTACGTGCTGCCA
64 GCCGATCGAAGAGGCAGAATGCGTAAGTCAGA-GATCAG-CCTGATCCCCC-CTACGTGCTGCCA
* * * * * *
16350594 GTCTCGTTGCCACATCCCTCGGTCCGGTT-GGG
126 -TCTTGCTGCCGCAACCCTCAGTCC-GTTCGGA
* * *
16350626 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-AGGCGCTCAG
* * * *
16350691 CCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATCTGCCTGATCCCCCCTACGTGCTACCGATCT
65 CCGATCGAAGAGGCAGAATGCGTAAGTCAGAGATCAGCCTGATCCCCCCTACGTGCTGCC-ATCT
* * *
16350756 TGCTGCCGCAACCCTCTGTTCAG-TCTGA
129 TGCTGCCGCAACCCTCAG-TCCGTTCGGA
* *
16350784 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16350812 TTAGACATGG
Statistics
Matches: 268, Mismatches: 60, Indels: 31
0.75 0.17 0.09
Matches are distributed among these distances:
155 1 0.00
156 20 0.07
157 87 0.32
158 137 0.51
159 23 0.09
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGCGCTCAGC
CGATCGAAGAGGCAGAATGCGTAAGTCAGAGATCAGCCTGATCCCCCCTACGTGCTGCCATCTTG
CTGCCGCAACCCTCAGTCCGTTCGGA
Found at i:16350814 original size:26 final size:26
Alignment explanation
Indices: 16350785--16350837 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16350775 TCAGTCTGAT
*
16350785 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16350811 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16350837 C
1 C
16350838 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16350953 original size:184 final size:184
Alignment explanation
Indices: 16350626--16350991 Score: 493
Period size: 184 Copynumber: 2.0 Consensus size: 184
16350616 TCCGGTTGGG
* ** * * *
16350626 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
16350691 CCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATCTGCCTGATCCCCCCTACGTGCTACCGATCT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGAATCTGACTGATCCCCCCTACGTACTACCGATCC
* * *
16350756 TGCTGCCGCAACCCTCTGTTCAG-TCTGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTACCGCAACCCTC-GGTCAGATCTGATCTTAGACTGGGAATGAACTCTGTAT
* *
16350810 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCGCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCAGGCGCTCAG
* * *
16350875 TCGACCGGAGAGGCAGAATGCGCAAGCCAGGAATC-GACTCGATCCCCCCTACGTACTATCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGAATCTGACT-GATCCCCCCTACGTACTACCGATC
* * *
16350939 CTACTACTGCAACCCTCGGTCCGATCTGATCTTGGACTGGGAATGAACTCTGT
130 CTACTACCGCAACCCTCGGTCAGATCTGATCTTAGACTGGGAATGAACTCTGT
16350992 GTGCCTAAGT
Statistics
Matches: 157, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
183 7 0.04
184 150 0.96
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGAATCTGACTGATCCCCCCTACGTACTACCGATCC
TACTACCGCAACCCTCGGTCAGATCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:16351204 original size:159 final size:158
Alignment explanation
Indices: 16350810--16351312 Score: 505
Period size: 158 Copynumber: 3.2 Consensus size: 158
16350800 AACTCTGTAT
** *
16350810 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAACGAAACGAGCGTGCGGGCGCTCT-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-TA
* * * *
16350874 GTCGACCGGAGAGGCAGAATGCGCAAGCC-AGGAATCGACTCGATCCCCCCTACGTACTATCGAT
65 GTCGACCGGAGAGGCAGAATGCGCAAGCCGAGG-ATCGGCTCGATCCCCCCTGCGTGCTGTCGAT
* * * *
16350938 CCTACTACTGCAACCCTCGGTCCGATCTGA
129 CCTGCTGCCGCAACCCTCGATCCGATCTGA
* * * * * * * * *
16350968 TCTTGGAC-TGGGAATGAACTCTGTGTGCCTAAGTCAACCCATGAAACCAGCGTGGGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTA
* * * * * * * * *
16351032 GCCGACTGAAGAGGCATAATGCGTAAGCCGAGGATCGGGTTGGTCCCCCTCTGCGTGCTG-CCAG
65 GTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCC-CTGCGTGCTGTCGA-
* *
16351096 TCCTGCTGCCACAACCCTCGATCCGAT-TGGG
128 TCCTGCTGCCGCAACCCTCGATCCGATCT-GA
* * * *
16351127 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
* * *
16351192 TCGACCGGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCC
* * * *
16351257 TGCTGCCGCAACCCTTGGTCCGGTCCGA
131 TGCTGCCGCAACCCTCGATCCGATCTGA
* *
16351285 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16351313 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 144 0.53
159 123 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
TCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCCGATCTGA
Found at i:16351289 original size:501 final size:499
Alignment explanation
Indices: 16350287--16351401 Score: 1401
Period size: 501 Copynumber: 2.2 Consensus size: 499
16350277 GCTCAAAATA
*
16350287 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * * *
16350352 TTAAACGAGCGTGCGGACGCTCAGCCGATCGGAGAGGTAGATTGCGTAAGTCAGAGATCGGGCTG
66 TGAAACGAGCGTGCGGGCGCTCTGCCGACCGGAGAGGCAGAATGCGCAAGCCAGAGATCGGACTG
* * *
16350417 ATCCCCCCTACGTGCTGTCAATCCTACTACTGCAACCTCAGTCCGTTCTGATCTTAGACTAGGAA
131 ATCCCCCCTACGTACTATCAATCCTACTACTGCAACCTCAGTCCGATCTGATCTTAGACTAGGAA
* * *
16350482 TGAACTTCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAGCTGATCGAAAAGGC
196 TGAACTTCGTATGCCTAAGTCAACCCACGAAACCAGCGTGCGGGCACTAAGCCGATCGAAAAGGC
* * *
16350547 ATAATGCAAAGTCAACGATCAGCCCTGTCCCCCTCTACGTGCTGCCAGTCTCGTTGCCACATCCC
261 ATAATGCAAAGCCAACGATCAGCCCTGTCCCCCTCTACGTGCTGCCAGTCTCGCTGCCACAACCC
* * * *
16350612 TCGGTCCGGTTGGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGT
326 TCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGT
* * * * * *
16350677 GTGTAGGTGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATCTGCCTGATCCCCCCTA
391 GTGTAGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCCTA
* * * *
16350742 CGTGCTACCGATCTTGCTGCCGCAACCCTCTGTTCAGTCTGATC
456 CATGCTACCGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGATC
**
16350786 TTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAA
1 TTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* *
16350851 CGAAACGAGCGTGCGGGCGCTCTGTCGACCGGAGAGGCAGAATGCGCAAGCCAG-GAATC-GACT
66 TGAAACGAGCGTGCGGGCGCTCTGCCGACCGGAGAGGCAGAATGCGCAAGCCAGAG-ATCGGACT
* * * *
16350914 CGATCCCCCCTACGTACTATCGATCCTACTACTGCAACCCTCGGTCCGATCTGATCTTGGACTGG
130 -GATCCCCCCTACGTACTATCAATCCTACTACTGCAA-CCTCAGTCCGATCTGATCTTAGACTAG
* * * ** *
16350979 GAATGAAC-TCTGTGTGCCTAAGTCAACCCATGAAACCAGCGTGGGGGTGCTGAGCCGA-CTGAA
193 GAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACCAGCGTGCGGGCACTAAGCCGATC-GAA
* * * * *** *
16351042 GAGGCATAATGCGTAAGCCGAGGATC-GGGTTGGTCCCCCTCTGCGTGCTGCCAGTC-CTGCTGC
256 AAGGCATAATGC-AAAGCCAACGATCAGCCCT-GTCCCCCTCTACGTGCTGCCAGTCTC-GCTGC
*
16351105 CACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
318 CACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * *
16351170 AAACG-G-GTGTACGGGCGCTTAGTCGACCGGAGAGGCAGAATGCGCAAGCC-GAAGATCGGCCC
383 AAACGAGTGTGTA--GGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAG-AGATCGGCCC
* ** *
16351232 GATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCT-TGGTCCGGTCCGATC
445 GATCCCCCCTACATGCTACCGATCCTGCTGCCGCAACCCTCT-GTCCAGTCCGATC
* * *
16351287 TTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCC
1 TTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
*
16351351 ATGAAACGAGCGTGCGGGCGCT-TAGCCGACCAGAGAGGCA-AGATGCGCAAG
65 ATGAAACGAGCGTGCGGGCGCTCT-GCCGACCGGAGAGGCAGA-ATGCGCAAG
16351402 TCGGGGATCG
Statistics
Matches: 530, Mismatches: 71, Indels: 28
0.84 0.11 0.04
Matches are distributed among these distances:
498 4 0.01
499 150 0.28
500 92 0.17
501 284 0.54
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (499 bp):
TTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
TGAAACGAGCGTGCGGGCGCTCTGCCGACCGGAGAGGCAGAATGCGCAAGCCAGAGATCGGACTG
ATCCCCCCTACGTACTATCAATCCTACTACTGCAACCTCAGTCCGATCTGATCTTAGACTAGGAA
TGAACTTCGTATGCCTAAGTCAACCCACGAAACCAGCGTGCGGGCACTAAGCCGATCGAAAAGGC
ATAATGCAAAGCCAACGATCAGCCCTGTCCCCCTCTACGTGCTGCCAGTCTCGCTGCCACAACCC
TCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGT
GTGTAGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCCTA
CATGCTACCGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGATC
Found at i:16351337 original size:26 final size:26
Alignment explanation
Indices: 16351286--16351338 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16351276 CCGGTCCGAT
**
16351286 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16351312 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16351338 C
1 C
16351339 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16352147 original size:26 final size:26
Alignment explanation
Indices: 16352111--16352163 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16352101 CTGGTCTGAT
*
16352111 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
16352137 CTTAAACTAGGGATGAATTTCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
16352163 C
1 C
16352164 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:16352783 original size:825 final size:825
Alignment explanation
Indices: 16351194--16352818 Score: 2590
Period size: 825 Copynumber: 2.0 Consensus size: 825
16351184 GCGCTTAGTC
* * *
16351194 GACCGGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTG
1 GACCGGAGAGGCAGAATACGCAAGCCGAAGATCGGCCCGATCCCCCCTACATGATGTCGATCCTG
* * * * * * *
16351259 CTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
66 CTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGG
* * *
16351324 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGAGG
131 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAGAGG
** * *
16351389 CAAGATGCGCAAGTCGGGGATCGAACTGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
196 CAAGATGCGCAAGTCAAGGATCGAACTGGTGGTAGGTGGGTTCAAGCACATATTCATATTTCTAC
* ** *
16351454 CATGCCAATGCCATTTTTATGGCTTTTAAATTCATATAATGGTCCCCTAAGCCTTCATGTGAAGT
261 CATGCCAATGCCATTTTGATGGCTTGCAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
*
16351519 TTCGTGGCAAGACGACCCGTCTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTT
326 TTCGTGGCAAGACGACCCGTCTTCTATTTTTCATGATTTTTGAAACTTTTTACGGATCGGGATTT
*
16351584 TTTAAAATTTTTTTAGAAAAGGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTCTT
391 TTTAAAATTGTTTTAGAAAAGGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTCTT
16351649 GGAATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAA
456 GGAATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAA
*
16351714 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
521 GTGTCCCCATTTCAAACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATGCTCTTT
* *
16351779 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
586 AAGGGGGCGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
16351844 ACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCATCG
651 ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCATCG
* *
16351909 GTTAGGCTCTCCGATGATGCTCCGGCAATGGTGCCCCGATGAAAAAAATGCGGCACCAGCACATG
716 ATTAGGCTCTCCGATGATGCTCCGACAATGGTGCCCCGATGAAAAAAATGCGGCACCAGCACATG
*
16351974 CCCGAGCCCAACATGTGCACAAAATGGGCGTTCGGGTGCTCAACT
781 CCCAAGCCCAACATGTGCACAAAATGGGCGTTCGGGTGCTCAACT
* ** * * * *
16352019 GACCGGAGAGGCAGAATATGCAAGCCGGGGATTGGCCTGATCCCCCTTACGTGATGTCGATCCTG
1 GACCGGAGAGGCAGAATACGCAAGCCGAAGATCGGCCCGATCCCCCCTACATGATGTCGATCCTG
* * *
16352084 CTACCGCTACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGG
66 CTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGG
* * * * **
16352149 ATGAATTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGTTGACCAGAGAGG
131 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAGAGG
* * *
16352214 CAGGATGTGCAAGTCAAGGATTGAA-TGGGTGGTAGGTGGGTTCAAGCACATATTCATATTTCTA
196 CAAGATGCGCAAGTCAAGGATCGAACT-GGTGGTAGGTGGGTTCAAGCACATATTCATATTTCTA
* *
16352278 CCGTGCCAATGCCATTTTGATGGCTTGCAAATTCATACAATGGTCCCCTCAGCCTTCATGTGAAG
260 CCATGCCAATGCCATTTTGATGGCTTGCAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
*
16352343 TTTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGATCGGGATT
325 TTTCGTGGCAAGACGACCCGTCTTCTATTTTTCATGATTTTTGAAACTTTTTACGGATCGGGATT
* *
16352408 TTTTAAAATTGTTTTAG-AAAGATTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTG
390 TTTTAAAATTGTTTTAGAAAAG-GTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTC
* ** *
16352472 TTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGGAGAAGATTTTGTGATCATTTGAAAA
454 TTGGAATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGGAGAAGATTTTGTGACCATTTGAAAA
*
16352537 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATGCTCT
519 AAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATGCTCT
16352602 TTAAGGGGGCGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
584 TTAAGGGGGCGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
16352667 GCACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCAATCGTCGGAACCCCCAATGCCGT
649 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCAT
* * * * *
16352731 CGATTAGGCTCTTCGGTGATGCTCCGACGATGGTGCCCTGGGTGAAAAAAATGCGGCACCAGCAC
714 CGATTAGGCTCTCCGATGATGCTCCGACAATGGTGCCC-CGATGAAAAAAATGCGGCACCAGCAC
*
16352796 ATGCCCAAGCCCAGCATGTGCAC
778 ATGCCCAAGCCCAACATGTGCAC
16352819 CGTGGCTCAA
Statistics
Matches: 729, Mismatches: 68, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
824 72 0.10
825 657 0.90
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (825 bp):
GACCGGAGAGGCAGAATACGCAAGCCGAAGATCGGCCCGATCCCCCCTACATGATGTCGATCCTG
CTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGG
ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAGAGG
CAAGATGCGCAAGTCAAGGATCGAACTGGTGGTAGGTGGGTTCAAGCACATATTCATATTTCTAC
CATGCCAATGCCATTTTGATGGCTTGCAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
TTCGTGGCAAGACGACCCGTCTTCTATTTTTCATGATTTTTGAAACTTTTTACGGATCGGGATTT
TTTAAAATTGTTTTAGAAAAGGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTCTT
GGAATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAA
GTGTCCCCATTTCAAACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATGCTCTTT
AAGGGGGCGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCATCG
ATTAGGCTCTCCGATGATGCTCCGACAATGGTGCCCCGATGAAAAAAATGCGGCACCAGCACATG
CCCAAGCCCAACATGTGCACAAAATGGGCGTTCGGGTGCTCAACT
Found at i:16352870 original size:26 final size:26
Alignment explanation
Indices: 16352832--16352884 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16352822 GGCTCAAACT
16352832 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16352858 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16352884 C
1 C
16352885 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16353211 original size:26 final size:26
Alignment explanation
Indices: 16353175--16353227 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16353165 CTGGTTCGAT
16353175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16353201 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16353227 C
1 C
16353228 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16353410 original size:26 final size:26
Alignment explanation
Indices: 16353373--16353423 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16353363 CGATCCAATC
*
16353373 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
16353399 TTAGACAT-GGAATGCACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
16353424 CCTCAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:16353913 original size:26 final size:26
Alignment explanation
Indices: 16353873--16353923 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16353863 TGGTCCGATC
* *
16353873 TTAGACTGTGAATGAACTCTATATGT
1 TTAGACTGGGAATGAACTCGATATGT
*
16353899 TTAGACTGGGGATGAACTCGATATG
1 TTAGACTGGGAATGAACTCGATATG
16353924 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCGATATGT
Found at i:16354290 original size:26 final size:26
Alignment explanation
Indices: 16354252--16354304 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16354242 CCGATCTGAT
16354252 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16354278 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16354304 C
1 C
16354305 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16354783 original size:26 final size:26
Alignment explanation
Indices: 16354754--16354806 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16354744 CCGGTCCAAT
16354754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16354780 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16354806 C
1 C
16354807 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16364143 original size:158 final size:157
Alignment explanation
Indices: 16363676--16364177 Score: 479
Period size: 158 Copynumber: 3.2 Consensus size: 157
16363666 CCCAGTCTAA
* * *
16363676 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACTAGACTGAGGGTTGCGACAGTAGGATCGAC
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAGAC-AGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
16363740 AGCATGTAGGGGGGATCTGGCTGATCCTCGGCTTGCACATTTTGCCTCTCCGATCGGTTGAGCAC
64 AGCATGAAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTAAGCGC
* *
16363805 CCGCATGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * * *
16363834 GCATAGGGAGTTCATTCCATGTCTTAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGATC
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACAGACCGAGGGTTGCGGCAGCAGGATCGA-C
* * * * * * * * *
16363899 -GCACGAAGAGGGAGACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCG
64 AGCATGAAG-GGGGGATCAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTAAGCG
* * * *
16363963 CCCGTACGCTCATTTCATGGGTTGACATAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** *
16363993 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCAAGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
16364057 AGCATGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCTGACCGGCTAAGCGC
64 AGCATGAAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTAAGCGC
* **
16364122 CAGCACGCTCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
16364151 GCATATAGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
16364178 CATACGGAGT
Statistics
Matches: 265, Mismatches: 71, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 138 0.52
159 121 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CATGAAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTAAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16364531 original size:171 final size:170
Alignment explanation
Indices: 16364210--16364532 Score: 405
Period size: 171 Copynumber: 1.9 Consensus size: 170
16364200 TAAGATCGGA
* * * * *
16364210 CCGGATTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGCAGCATGCAAGGGGGACCGAGTC
1 CCGGATCGAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCGGCAGCACGCAAGGGGGACAGACTC
* * *** *
16364275 GATCCCCGACTTATGCATTTTGCCTCTCCGACCGACTGAGCTTTCGCACGCTCATTTCGTGGGTT
66 GATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTGGATT
* * * *
16364340 GGCTTAGGTATACGGAGTTCATTCAATGTCTAAGCCCCAG
131 GACATAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAG
* * *
16364380 CCGGATCGAGGGTTGTGGTAGCAAGACCGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCAGAC
1 CCGGATCGAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCGGCAGCACGCA-AGGGGGA-CAGAC
* * * ** *
16364445 T-GATCCCCGACTTGCGCATTATGCCTCTCTGGCCGGTTGCGCACCCGCACGCTCATTTCGTGGA
64 TCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTGGA
16364509 TTGACATAGGCATACAGAGTTCAT
129 TTGACATAGGCATACAGAGTTCAT
16364533 CCCCAGTCTA
Statistics
Matches: 127, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
170 45 0.35
171 78 0.61
172 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (170 bp):
CCGGATCGAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCGGCAGCACGCAAGGGGGACAGACTC
GATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTGGATT
GACATAGGCATACAGAGTTCATTCAATGTCTAAGCCCCAG
Found at i:16364556 original size:26 final size:26
Alignment explanation
Indices: 16364520--16364570 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16364510 TGACATAGGC
*
16364520 ATACAGAGTTCATCCCCAGTCTAAGG
1 ATACAGAGTTCATCCCCAGACTAAGG
*
16364546 ATACAGAGTTCATTCCCAGACTAAG
1 ATACAGAGTTCATCCCCAGACTAAG
16364571 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGACTAAGG
Found at i:16365056 original size:26 final size:26
Alignment explanation
Indices: 16365019--16365071 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16365009 GTTGGCTTAG
16365019 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
* *
16365045 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16365071 G
1 G
16365072 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16365767 original size:26 final size:26
Alignment explanation
Indices: 16365738--16365790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16365728 GTTGACTTAG
*
16365738 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16365764 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16365790 G
1 G
16365791 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16365951 original size:26 final size:26
Alignment explanation
Indices: 16365922--16365974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16365912 GTTGACTTAG
*
16365922 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16365948 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16365974 G
1 G
16365975 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16365974 original size:184 final size:183
Alignment explanation
Indices: 16365665--16366073 Score: 505
Period size: 184 Copynumber: 2.2 Consensus size: 183
16365655 GACCACCCTT
* * * ** * *
16365665 TCGATCCCGATTTGCGCATCCTGCCTCTTCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGT
1 TCGATCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGAACGCACGCTCGTTTCATGGGT
* * * *
16365730 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATCA
* * * * ***
16365795 AACCGGACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGAACTGGG
131 AACCGGACCGAAGGTTCCAGCAGCAAGATCGACAGCACGCAGGGGGG-ACCAAG
* * *
16365849 TCGATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCGAATGCACGCTCGTTTCAT-GG
1 TCGATCC-CGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGAACGCACGCTCGTTTCATGGG
* *
16365913 TTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATC
65 TTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATC
* * * * *
16365978 AAACCGGACTGAAGGTTCCGGTAGCAAGATCGATAGCATGCAGGGGGGACCAAG
130 AAACCGGACCGAAGGTTCCAGCAGCAAGATCGACAGCACGCAGGGGGGACCAAG
* * *
16366032 CCGATCACCGACTTGCGCATTCTGTCTCTTCGACCGACTGAG
1 TCGATC-CCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAG
16366074 AGCCCGCATG
Statistics
Matches: 190, Mismatches: 33, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
183 38 0.20
184 108 0.57
185 44 0.23
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (183 bp):
TCGATCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGAACGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATCA
AACCGGACCGAAGGTTCCAGCAGCAAGATCGACAGCACGCAGGGGGGACCAAG
Found at i:16366120 original size:184 final size:182
Alignment explanation
Indices: 16365666--16366120 Score: 471
Period size: 184 Copynumber: 2.5 Consensus size: 182
16365656 ACCACCCTTT
* * * *
16365666 CGATCCCGATTTGCGCATCCTGCCTCTTCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 CGATCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGT-GGTT
** * * * *
16365731 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGA
65 GACTTAGAAAAAC-GAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATCAA
* * * * *** *
16365796 ACCGGACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGAACTGGGT
129 ACCGGACCGAAGGTTCCAGCAGCAAGATCGACAGCACGCAGGGGGGAACCAAGC
* * *** *
16365850 CGATCCTCGACTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCGAATGCACGCTCGTTTCATGGTT
1 CGATCC-CGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTT
** * * *
16365915 GACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAA
65 GACTTAGAAAAACG-AGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATCAA
* * * * *
16365980 ACCGGACTGAAGGTTCCGGTAGCAAGATCGATAGCATGCAGGGGGG-ACCAAGC
129 ACCGGACCGAAGGTTCCAGCAGCAAGATCGACAGCACGCAGGGGGGAACCAAGC
* * * * *
16366033 CGATCACCGACTTGCGCATTCTGTCTCTTCGACCGACTGAGAGCCCGCATGCTCGTTCCGTGAGT
1 CGATC-CCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTG-GT
* *
16366098 TGAATTAGAAAAAATGAGTTCAT
64 TGACTTAG-AAAAACGAGTTCAT
16366121 TGCTTGTCTA
Statistics
Matches: 222, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
183 53 0.24
184 122 0.55
185 47 0.21
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (182 bp):
CGATCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTG
ACTTAGAAAAACGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATCAAAC
CGGACCGAAGGTTCCAGCAGCAAGATCGACAGCACGCAGGGGGGAACCAAGC
Found at i:16366300 original size:25 final size:26
Alignment explanation
Indices: 16366264--16366315 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16366254 GTTGACTTAG
*
16366264 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16366289 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16366315 G
1 G
16366316 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16366477 original size:26 final size:26
Alignment explanation
Indices: 16366448--16366500 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16366438 GTTGGCTTAG
16366448 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
16366474 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16366500 G
1 G
16366501 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16366675 original size:26 final size:26
Alignment explanation
Indices: 16366645--16366697 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16366635 GTTCACTTAG
16366645 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16366671 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16366697 G
1 G
16366698 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16367557 original size:26 final size:26
Alignment explanation
Indices: 16367527--16367579 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16367517 GTTAACTTAG
16367527 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
16367553 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
16367579 G
1 G
16367580 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:16367740 original size:184 final size:184
Alignment explanation
Indices: 16367428--16368668 Score: 813
Period size: 184 Copynumber: 6.7 Consensus size: 184
16367418 GCAACGAGAA
* ** * * * ** *
16367428 CGACAGCACGCAGAGGGGGA-CTGGGCTTATCCTCGGCTTGCGCATTATTCCTCTTCGGCCGGTT
1 CGACAGCACGCAGA-GGGGATC-GGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * * * * *
16367492 GAGCGCCCGTACGTTCATTTCATGGGTTAACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCA
64 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCA
* *
16367556 TATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTA-CGACAGTAGGAT
128 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTAGCGACAGTAGGAT
* * * *
16367613 CGACAGCATGCAGAGGGAATCGGATCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGA
1 CGACAGCACGCAGAGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * * * *
16367678 CCGCCCGCACGTTC-TTTCCGTGGGTTGCCTTAGGTATACGAAGTTCATTCCATGTCTAAGCATG
66 GCGCCCGCACGCTCATTT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* * *
16367742 TGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGACCAGCAGCAGG
130 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTT-----AGC--G---A-CAGTAGG
16367807 AT
183 AT
* * * **
16367809 C-AGCAGCACGCAGGGGGGATCAGG-CTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
1 CGA-CAGCACGCAGAGGGGATC-GGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * * * * * *
16367872 GAGCACCTGCACGCTCATTTCGTAGGTCGGCTTAGGCATATGGAGTTCATTCCATGTCGAAGC--
64 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
** * * ** * * * * *
16367935 -CCCAG-CCGGA-T-CGAGGGT-TG-T-GGTA--GCAAGACCGG-CAGCG--AG-A--AT
129 ACGGAGTTC--ATTCCCAGTCTAAGATCGG-ACCGGACGA-GGGTTAGCGACAGTAGGAT
** * * * * *
16367980 -GGTAGCACGCAGAGGGGGACCAGG-CTGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGTT
1 CGACAGCACGCAGA-GGGGATC-GGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * * * *
16368043 AAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAACA
64 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCA
* *
16368107 TACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT-GCGACAGTAGGAT
128 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTAGCGACAGTAGGAT
* * * ** * * *
16368164 CGACAGGACGCAGGGGGGATCGGACCGATCCCCATCTTACGCATTCTGCCTCTTCGATCGGTTGA
1 CGACAGCACGCAGAGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * *
16368229 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA-TTCATTCCATGTCTAAGCATAC
66 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
** * * *
16368293 GGAACTCATTCCCAATCTAAGATCAGACCGGACTGAGAGTTGTGGCAGCAGGACCAGCAATAGGA
131 GGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAG-G--GT--TAGC--GA-CAG---TAGGA
16368358 T
184 T
* * * * *
16368359 CGACAGCATGTAGAGGGGGA-CCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCT
1 CGACAGCACGCAGA-GGGGATCGGA-CCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * * * *
16368423 GAGCGCACC-CACACTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGC
64 GAGCGC-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
** ** * *
16368486 ATACAAAGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTT-GCGGCAGTAGGAT
127 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTAGCGACAGTAGGAT
** * * * * * * *
16368544 CGGTAGCATGCAG-GGGGACCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCTGACCGGCTGA
1 CGACAGCACGCAGAGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * * * *
16368608 GAGCTCGTACGCCCATTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGC
66 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCATGTCTAAGC
16368669 CCTAGCCGAA
Statistics
Matches: 825, Mismatches: 163, Indels: 138
0.73 0.14 0.12
Matches are distributed among these distances:
170 9 0.01
171 95 0.12
172 3 0.00
173 2 0.00
174 6 0.01
175 4 0.00
176 1 0.00
177 2 0.00
178 1 0.00
179 7 0.01
180 3 0.00
181 2 0.00
182 9 0.01
183 139 0.17
184 206 0.25
185 39 0.05
186 2 0.00
187 2 0.00
188 6 0.01
189 6 0.01
190 3 0.00
191 5 0.01
192 9 0.01
193 3 0.00
194 3 0.00
195 21 0.03
196 184 0.22
197 53 0.06
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
CGACAGCACGCAGAGGGGATCGGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACGAGGGTTAGCGACAGTAGGAT
Found at i:16367802 original size:12 final size:12
Alignment explanation
Indices: 16367785--16367816 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
16367775 CCGAGGGTTG
16367785 CAGCAGCAGGAC
1 CAGCAGCAGGAC
*
16367797 CAGCAGCAGGAT
1 CAGCAGCAGGAC
16367809 CAGCAGCA
1 CAGCAGCA
16367817 CGCAGGGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.31, G:0.31, T:0.03
Consensus pattern (12 bp):
CAGCAGCAGGAC
Found at i:16368115 original size:26 final size:26
Alignment explanation
Indices: 16368079--16368129 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16368069 TTGACTTAGG
*
16368079 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAATCTAAA
*
16368105 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
16368130 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAA
Found at i:16368399 original size:551 final size:550
Alignment explanation
Indices: 16367185--16368472 Score: 1548
Period size: 551 Copynumber: 2.3 Consensus size: 550
16367175 GTTGACTTAG
** * *** * * *
16367185 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTTGACCGA-AGGTTGCGGTAGCAGGACTAGC
1 GCATACGGAACTCATTCCCAATCTAAGATCAGACCAGACCGAGA-GTTGCAGCAGCAGGACCAGC
* * * ** * * * *
16367249 AGCAGGATC-GCCAGCACACAGGGGGGGACCTGGTTGATCCTCGACGTACACATTCTGCCTCTCC
65 AACAGGATCAG-CAGCACGCA-GGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCC
* * * * *
16367313 GATTGGCTGAGCACCCGCACATTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGT
128 GATCGGCTGAGCA-CCGCACACTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
16367378 CTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGACTGGCAACGAGAACGACAGCACGCAGAG
192 CGAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAAGACCGGCAACGAGAACGACAGCACGCAGAG
** * * * * * *
16367443 GGGGACTGGGCTTATCCTCGGCTTGCGCATTATTCCTCTTCGGCCGGTTGAGCGCCCGTACGTTC
257 GGGGACCAGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGTTAAGCACCCGCACGTTC
* * *
16367508 ATTTCATGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
322 ATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCA
* * * * * *
16367573 GTCTAAGATCGGACTGGATCGAGGGTTACGACAGTAGGATCGACAGCATGCAGAGGGAATCGGAT
387 ATCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGAGGGAATCGGAC
* * ** * *
16367638 CGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGACCGCCCGCACGTTCTTTCCGTGGGT
452 CGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGACCGCCCGCACGCTCTTTCCATGGGT
*
16367703 TGCCTTAGGTATACGAAGTTCATTCCATGTCTAA
517 TGCCTTAGGCATACGAAGTTCATTCCATGTCTAA
** ** * * *
16367737 GCATGTGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGACCAGCA
1 GCATACGGAACTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTGCAGCAGCAGGACCAGCA
* * * ** * **
16367802 GCAGGATCAGCAGCACGCAGGGGGGATCAGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGC
66 ACAGGATCAGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGAT
* * * *
16367867 CGGCTGAGCACCTGCACGCTCATTTCGTAGGTCGGCTTAGGCATATGGAGTTCATTCCATGTCGA
131 CGGCTGAGCACC-GCACACTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGA
* * * **
16367932 AGCCCCAGCCGGA-TCGAGGGTTGTGGTAGCAAGACCGGCAGCGAGAATGGTAGCACGCAGAGGG
195 AGCCCCAGCCGGACT-GAGGGTTGTGGCAGCAAGACCGGCAACGAGAACGACAGCACGCAGAGGG
*
16367996 GGACCAGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGTTAAGCACCCGCACGTTCAT
259 GGACCAGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGTTAAGCACCCGCACGTTCAT
* *
16368061 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAAT
324 TTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAAT
* * * *
16368126 CTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGGACGCAGGGGGGATCGGACCG
389 CTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGAGGGAATCGGACCG
* * * *
16368191 ATCCCCATCTTACGCATTCTGCCTCTTCGATCGGTTGAGCGCCCGCACGCTCGTTT-CATGGGTT
454 ATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGACCGCCCGCACGCTC-TTTCCATGGGTT
* *
16368255 GGCTTAGGCATACGGA-TTCATTCCATGTCTAA
518 GCCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * **
16368287 GCATACGGAACTCATTCCCAATCTAAGATCAGACCGGACTGAGAGTTGTGGCAGCAGGACCAGCA
1 GCATACGGAACTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTGCAGCAGCAGGACCAGCA
* * *
16368352 ATAGGATC-GACAGCATGTAGAGGGGGACC-GAGCCGATCCCCGGCTTGCACATTCTGCCTCTCC
66 ACAGGATCAG-CAGCACGCAG-GGGGGACCAG-GCCGATCCCCGGCTTGCACATTCTGCCTCTCC
* *
16368415 GATCGGCTGAGCGCACC-CACACTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCAT
128 GATCGGCTGA--GCACCGCACACTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCAT
16368473 CCCTAGTCTA
Statistics
Matches: 623, Mismatches: 103, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
549 1 0.00
550 88 0.14
551 455 0.73
552 73 0.12
553 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (550 bp):
GCATACGGAACTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTGCAGCAGCAGGACCAGCA
ACAGGATCAGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGAT
CGGCTGAGCACCGCACACTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAA
GCCCCAGCCGGACTGAGGGTTGTGGCAGCAAGACCGGCAACGAGAACGACAGCACGCAGAGGGGG
ACCAGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGTTAAGCACCCGCACGTTCATTT
CATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAATCT
AAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGAGGGAATCGGACCGAT
CCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGACCGCCCGCACGCTCTTTCCATGGGTTGCC
TTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:16368495 original size:26 final size:26
Alignment explanation
Indices: 16368458--16368510 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16368448 GTTGACTTAG
*
16368458 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
16368484 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16368510 G
1 G
16368511 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16368951 original size:26 final size:26
Alignment explanation
Indices: 16368915--16368967 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16368905 GTTGGCTTAG
16368915 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16368941 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16368967 G
1 G
16368968 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16369404 original size:184 final size:182
Alignment explanation
Indices: 16369007--16369482 Score: 598
Period size: 184 Copynumber: 2.6 Consensus size: 182
16368997 GGGCCAACAA
* * * *
16369007 TAGGATCGGCAGCACGCAGGGAAGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGAC
1 TAGGATCGGCAGCACGCAGGG-AGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
* *
16369072 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATCCCAGTCTAA
65 CGGCTGAGC-CCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAA
* * **
16369137 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGAACCAGGGGTTGCGACAG
129 CCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGACAG
* * * * * *
16369191 CAGGATCGGTAGCACGCAGAGGTGGACCGGG-CTTATCCCCAGCTTGCGCATTATGCCTCTCCGG
1 TAGGATCGGCAGCACGCAG-GGAGGACCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* * *
16369255 TCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCT
64 CCGGCTGAGC-CCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCC-AGTCT
* * * *
16369320 AACCATACAGAGTTCATTCCCATTCTAAGATCAGACTGTA-CAGAGGGTTGTGACAG
127 AACCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAG-GGGTTGCGACAG
* * * *
16369376 TAGGATCGGCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACGTTCTGCCTCTTCGGCC
1 TAGGATCGGCAGCACGCAGGGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
* * *
16369441 GGTTGAG-CCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATA
66 GGCTGAGCCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATA
16369483 GGGAGTTTAT
Statistics
Matches: 248, Mismatches: 39, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
182 32 0.13
183 1 0.00
184 146 0.59
185 69 0.28
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (182 bp):
TAGGATCGGCAGCACGCAGGGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
GGCTGAGCCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAACC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAGGGGTTGCGACAG
Found at i:16369853 original size:170 final size:170
Alignment explanation
Indices: 16369554--16369866 Score: 382
Period size: 170 Copynumber: 1.8 Consensus size: 170
16369544 CACACAAAGA
* * *
16369554 GGGATCGGGCCTATCCCTAGCTTACGCATTATTCCTCTCCGGTCGGTTCAGCACCAGCACGCTCA
1 GGGATCGGGCCTATCCCTAGCTTACGCATTATACCTCTCCAGTCGGTTCAGCACCAGCACACTCA
* * **
16369619 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACAGAGGGTT
66 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACTAGATCAAACAGAGGGTT
16369684 GTGGCAACAGGACCAGCAGTAGGATCGACAGCACGCAGGG
131 GTGGCAACAGGACCAGCAGTAGGATCGACAGCACGCAGGG
* * * * * *
16369724 GGGATCGGG-CTGATCCCT-GACTTGCGCATTCTACCTCTCTAGTCGGTTGAGCTCCCGCACACT
1 GGGATCGGGCCT-ATCCCTAG-CTTACGCATTATACCTCTCCAGTCGGTTCAGCACCAGCACACT
* * * * * *
16369787 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-TCAAACTGAG
64 CATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ACTAGATCAAACAGAG
*
16369850 GGTTGTGGCAGCAGGAC
127 GGTTGTGGCAACAGGAC
16369867 TGACAGCGAG
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
169 6 0.05
170 111 0.93
171 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (170 bp):
GGGATCGGGCCTATCCCTAGCTTACGCATTATACCTCTCCAGTCGGTTCAGCACCAGCACACTCA
TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACTAGATCAAACAGAGGGTT
GTGGCAACAGGACCAGCAGTAGGATCGACAGCACGCAGGG
Found at i:16370214 original size:26 final size:26
Alignment explanation
Indices: 16370162--16370214 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16370152 GTTGGCTTAG
* * *
16370162 GCATACAGATTTCATTCCATGTTTAA
1 GCATACAGAGTTCATCCCATGTCTAA
16370188 GCATACAGAGTTCACTCCCA-GTCTAA
1 GCATACAGAGTTCA-TCCCATGTCTAA
16370214 G
1 G
16370215 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCATGTCTAA
Found at i:16370234 original size:184 final size:182
Alignment explanation
Indices: 16369960--16370570 Score: 564
Period size: 184 Copynumber: 3.3 Consensus size: 182
16369950 CGTACGTTAA
** * *
16369960 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCTA
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCA
* * *
16370024 GTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGAC
65 GTCTAAGATCAGAACGGACGGAGGGTTGCGACAGCAGGATCG-CAGCACGCAGGGGGGATCGGGC
* ** * *
16370089 CGATCCTCAGCTTGCGCATTCTGTTTCTCCGGCCGACTGAGCTCCCACACGCTCG
129 CGATCC-CGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCG
* * * * *
16370144 ATTCGTGGGTTGGCTTAGGCATACAGATTTCATTCCATGTTTAAGCATACAGAGTTCACTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAG
*
16370209 TCTAAGATCAGATCGGATC-GAGGGTTGCAGCAGCAGGACAAGCAGCAGGATCTGCAGCACGCAG
66 TCTAAGATCAGAACGGA-CGGAGGGTT------GC--G---A-CAGCAGGATC-GCAGCACGCAG
* * * * * *
16370273 GGAGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGACTGAACGCACGCACGT
117 GG-GGGATCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGC
*
16370338 TCC
180 TCG
* * * *
16370341 TTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCGAAGCATACGGAGTTCATTCTCA
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCATACAGAGTTCATTCCCA
* ** * * *
16370405 GTCTAAGAT-TGAACAGGACGGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGGAGGGATCGGG
65 GTCTAAGATCAGAAC-GGACGGAGGGTTGCGACAGCAGGATC-GCAGCACGCAGGGGGGATCGGG
* * * * * * * * * *
16370469 CCGATCCCCGGCTTTCACATTCTGCGTCTCTGACCGGCTGAGAGCCTGCATGCCCG
128 CCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCG
* *
16370525 TTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
16370571 CCCAGCTGAA
Statistics
Matches: 344, Mismatches: 61, Indels: 44
0.77 0.14 0.10
Matches are distributed among these distances:
183 3 0.01
184 156 0.45
185 27 0.08
189 1 0.00
190 2 0.01
191 2 0.01
192 1 0.00
195 1 0.00
196 31 0.09
197 120 0.35
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (182 bp):
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCAGAACGGACGGAGGGTTGCGACAGCAGGATCGCAGCACGCAGGGGGGATCGGGCCG
ATCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCG
Found at i:16370389 original size:197 final size:196
Alignment explanation
Indices: 16370055--16370413 Score: 463
Period size: 197 Copynumber: 1.8 Consensus size: 196
16370045 AGGGTTGCGA
***
16370055 CAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATCCTCAGCTTGCGCATTCTGTTTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATCCTCAGCTTGCGCATTCTACCTCTCCG
* * * * * * * *
16370120 GCCGACTGAGCTCCCACACGCTCGATTCGTGGGTTGGCTTAGGCATACAGATTTCATTCCATGTT
66 GCCGACTGAACGCACACACGCTCCATTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTC
*
16370185 TAAGCATACAGAGTTCACTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGACAA
131 GAAGCATACAGAGTTCACTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGACAA
16370250 G
196 G
** *
16370251 CAGCAGGATCTG-CAGCACGCAGGGAGGGATCGGGTCGATCC-CTGGCTTGCGCATTCTACCTCT
1 CAGCAGGATC-GACAGCACGCAGGG-GGGATCGGACCGATCCTC-AGCTTGCGCATTCTACCTCT
* * * *
16370314 CCGGTCGACTGAACGCACGCACGTTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCC-T
63 CCGGCCGACTGAACGCACACACGCTCCATTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCAT
* * *
16370378 AGTCGAAGCATACGGAGTTCATTCTCAGTCTAAGAT
128 -GTCGAAGCATACAGAGTTCACTCCCAGTCTAAGAT
16370414 TGAACAGGAC
Statistics
Matches: 137, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
196 24 0.18
197 113 0.82
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
CAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATCCTCAGCTTGCGCATTCTACCTCTCCG
GCCGACTGAACGCACACACGCTCCATTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTC
GAAGCATACAGAGTTCACTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGACAA
G
Found at i:16370737 original size:26 final size:26
Alignment explanation
Indices: 16370701--16370753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16370691 GTTGACTTAG
16370701 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
16370727 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16370753 G
1 G
16370754 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16370911 original size:342 final size:342
Alignment explanation
Indices: 16370263--16371070 Score: 944
Period size: 342 Copynumber: 2.4 Consensus size: 342
16370253 GCAGGATCTG
* * * * * * * ** *
16370263 CAGCACGCAGGGAGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGACTGA-A
1 CAGCACGCA--GAGGGACCGGGCCGATCCCCGACTTGCGTATTCTGCGTCTCCGACCGACTCAGA
* * * *
16370327 CGCACGCACGTTCCTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCGAAGCATACG
64 -GCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACG
* ** *
16370392 GAGTTCATTCTCAGTCTAAGATTGAACAGGACGGAGGGTTGCGGTAGCAGGATCGGTAGCACACA
128 GAGTTCATTCCCAGTCTAAGATCAAACAGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACA
* ** * * * **
16370457 GGAGGGATCGGGCCGATCCCCGGCTTTCACATTCTGCGTCTCTGACCGGCTGAGAGCCTGCATGC
193 GGAAGGATCGGGCCGATCCCCAACTTTCACATTCTACCTCTCCGACCGGCTGAGAGCCTGCACAC
* * ** *
16370522 CCGTTTCGTGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCTGA-ACCGAG
258 CCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAACCAAGACCAAG
** *
16370586 GGTTGCGGCAGTAGGATCGA
323 GGTTGCGGCAACAAGATCGA
* * * * * *
16370606 CAGCATGCAGGGCGGACCGGGCCGATCCCCGACTTTCGTATTCTGTC-TCTCCGACTGATTCAGC
1 CAGCACGCAGAG-GGACCGGGCCGATCCCCGACTTGCGTATTCTG-CGTCTCCGACCGACTCAGA
*
16370670 GCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGG
64 GCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGG
* * ***
16370735 AGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCGGTAGTAGGATCGGTAGCATGTAG
129 AGTTCATTCCCAGTCTAAGATCAAACAGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAG
* * * * *
16370800 GAAGGATCGGGCCGATCCTCAACTTGT-GCGTTCTACCTCTCCGATCGGTTGAGAGCCTGCACAC
194 GAAGGATCGGGCCGATCCCCAACTT-TCACATTCTACCTCTCCGACCGGCTGAGAGCCTGCACAC
**
16370864 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAGACCAAG
258 CCGTTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAACCAAGACCAAG
16370929 GGTTGCGGCAACAAGATCGA
323 GGTTGCGGCAACAAGATCGA
* * * *
16370949 CAGCACGCAGAGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCGTCTTCGACCGGCTGAGAGC
1 CAGCACGCAGAGGGACCGGGCCGATCCCCGACTTGCGTATTCTGCGTCTCCGACCGACTCAGAGC
* ** * *
16371014 CCGTACGCCCATTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCC-ATGTCTAAGC
66 CCGCACGTTCATTTCGTGGGTTGACTTAGGCATACG-GAGTTCATCCCTA-GTCTAAGC
16371071 CCCAGTCAGA
Statistics
Matches: 390, Mismatches: 67, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
341 5 0.01
342 343 0.88
343 42 0.11
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (342 bp):
CAGCACGCAGAGGGACCGGGCCGATCCCCGACTTGCGTATTCTGCGTCTCCGACCGACTCAGAGC
CCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAAACAGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGGA
AGGATCGGGCCGATCCCCAACTTTCACATTCTACCTCTCCGACCGGCTGAGAGCCTGCACACCCG
TTTCATGGGTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAACCAAGACCAAGGGT
TGCGGCAACAAGATCGA
Found at i:16371034 original size:158 final size:158
Alignment explanation
Indices: 16370849--16371212 Score: 408
Period size: 158 Copynumber: 2.3 Consensus size: 158
16370839 TCCGATCGGT
* * * *
16370849 TGAGAGCCTGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGAGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * *
16370914 CCAACCAAGACCAAGGGTTGCGGCAACAAGATCGACAGCACGCA-GAGGGACCGGGCCGATCCCC
66 CCAACC-AGACCAACGGTTGCGACAACAAGATCGACAGCACGCAGGACGGACCGAGCCGATCCCC
* * * * *
16370978 GGCTTGCGTATTCTG-CGTCTTCGACCGGC
130 GACTTGCGCATTCTGTC-TCTCCAACCGAC
* *
16371007 TGAGAGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCC
1 TGAGAGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
** * * * ** * *
16371072 CCAGTCAGACCGACGGTTGCGACAGCAGGATCGACAGCTTGCAGGACGGACCGAGCTGATCCTCG
66 CCAACCAGACCAACGGTTGCGACAACAAGATCGACAGCACGCAGGACGGACCGAGCCGATCCCCG
* * *
16371137 ACTTTCGCATTCTGTCTCTCCAATCGAT
131 ACTTGCGCATTCTGTCTCTCCAACCGAC
* * * * *
16371165 TTAGCGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
1 TGAGAGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
16371213 TATCCCCAGT
Statistics
Matches: 170, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 30 0.18
158 139 0.82
159 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
TGAGAGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAACCAGACCAACGGTTGCGACAACAAGATCGACAGCACGCAGGACGGACCGAGCCGATCCCCG
ACTTGCGCATTCTGTCTCTCCAACCGAC
Found at i:16371416 original size:26 final size:26
Alignment explanation
Indices: 16371386--16371464 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16371376 GTTGGCTTAG
16371386 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16371412 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16371438 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16371464 G
1 G
16371465 ATCGAACCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16371819 original size:26 final size:26
Alignment explanation
Indices: 16371783--16371833 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16371773 TTGACTTAGG
16371783 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
* *
16371809 CATACGGAGTTCATTCCCATTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
16371834 GATCAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:16372492 original size:26 final size:26
Alignment explanation
Indices: 16372462--16372514 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16372452 GTTGACTTAG
*
16372462 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16372488 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16372514 G
1 G
16372515 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16372848 original size:26 final size:26
Alignment explanation
Indices: 16372819--16372869 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16372809 TGACTTATGC
16372819 ATACGAAGTTCA-TCCCTAGTCTAAGT
1 ATACGAAGTTCATTCCC-AGTCTAAGT
*
16372845 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
16372870 ATTGAACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:16373047 original size:355 final size:354
Alignment explanation
Indices: 16372188--16373370 Score: 951
Period size: 355 Copynumber: 3.4 Consensus size: 354
16372178 GACCAACAGT
* * * * * * *
16372188 AGGATCGACAGCATGTAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCG
1 AGGATCCACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GACA
* *
16372253 GCT-A-AGCTGCTGCACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 GCTGAGAGC--CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * ** * **
16372316 AGCCCTAGCCGGACCGAAGGTTGTGGCAGCAAGACCGGCAACGAGAACGGTAGCGTGCAGAAGGA
128 AGCCCTAGCCGGACCGAGGGTTGTAGCAGCAAGACCAACAACGAGAACGGCAGCACGCAGAAGGA
* * * * ** * * *
16372381 AACCGAGCTGATCCTCGGCTTGCGTATTATGCCTCTCTGGCCGGTTGAGCGCCCGTACGTTCATT
193 AACCGAGCTGATCCTCGGCTTACGCATTATACCTCTCCGGCCGACTGACCGCACGTACGCTCATT
* * *
16372446 TCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTC
258 TCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
16372511 TAAGATTGGACCGAACCGAGGGTTGCGGCAGC
323 TAAGATTGAACCGAACCGAAGGTTGCAGCAGC
* * ** * * * *
16372543 AGGATCCACAGCACGCAGGGGGGATCGGATCGATCCTCAGCTTGCGCATTCTGCCTCTCTGACTG
1 AGGATCCACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACAG
* * * * *
16372608 ACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA
66 -CTGAGAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
** * * * * * * *
16372672 G-ATTAGACCGGACTGAGGGTTGTAGCAGCAGGACCAACAGC-AGGATCTGCAGTACGCAGGGAG
129 GCCCTAG-CCGGACCGAGGGTTGTAGCAGCAAGACCAACAACGA-GAACGGCAGCACGCA-GAAG
* * * * *
16372735 G-GATCG-GGTCGATCCTCGGCTTACGCATTTTACCTCTCCGGTCGACTGACCGCACGTACGCTC
191 GAAACCGAGCT-GATCCTCGGCTTACGCATTATACCTCTCCGGCCGACTGACCGCACGTACGCTC
* * * * *
16372798 CTTTCGTGGGTTGACTTATGCATACGAAGTTCATCCCTAGTCTAAGTATACGGAGTTCATTCCCA
255 ATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
*
16372863 GTCTAAGATTGAACCGAACCGAAGGTTGCAGTAGC
320 GTCTAAGATTGAACCGAACCGAAGGTTGCAGCAGC
***
16372898 AGGATCGGTAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCT-TCGACC
1 AGGATCCACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GA-C
* * *
16372962 AGCTGAGAGCCTGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
64 AGCTGAGAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * ** * **
16373027 GCCCTAGCCAGACCGAGGG-T-TA-C-G-ATAG------TA-G-GATTGGTAGCATACAG--GGT
129 GCCCTAGCCGGACCGAGGGTTGTAGCAGCA-AGACCAACAACGAGAACGGCAGCACGCAGAAGG-
** * * * * * * * ** * * * *
16373077 GGACCGAGCCGATCCTTGACTTGCGCATTCTACCTCTCCGACTGGTTGAGCGCCCGCATGCTCAT
192 AAACCGAGCTGATCCTCGGCTTACGCATTATACCTCTCCGGCCGACTGACCGCACGTACGCTCAT
* **
16373142 TTCATAGGTTGACTTAGGCATACGGGGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
257 TTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * *
16373207 CTAAG-TTCAGACC-AGACCGAGGGTTGCGGCAGC
322 CTAAGATTGA-ACCGA-ACCGAAGGTTGCAGCAGC
* * * * * * * * ** *
16373240 AGGATCGACAACACACAGGAGGGAACCGAGACGGTGCCCGACTTACGCATTCTGTTTCTCTGGTC
1 AGGATCCACAGCACGCAGGAGGG-ACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GAC
* * * * * * ** * *
16373305 GGCTGA-ACGCCCGCCCGATCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCGTGTCTA
64 AGCTGAGA-GCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
16373369 AG
128 AG
16373371 AATAAGGAGT
Statistics
Matches: 659, Mismatches: 147, Indels: 56
0.76 0.17 0.06
Matches are distributed among these distances:
340 2 0.00
341 4 0.01
342 147 0.22
343 90 0.14
344 2 0.00
350 1 0.00
351 2 0.00
352 1 0.00
353 2 0.00
354 14 0.02
355 379 0.58
356 13 0.02
357 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (354 bp):
AGGATCCACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACAG
CTGAGAGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCTAGCCGGACCGAGGGTTGTAGCAGCAAGACCAACAACGAGAACGGCAGCACGCAGAAGGAAAC
CGAGCTGATCCTCGGCTTACGCATTATACCTCTCCGGCCGACTGACCGCACGTACGCTCATTTCA
TGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATTGAACCGAACCGAAGGTTGCAGCAGC
Found at i:16373189 original size:26 final size:26
Alignment explanation
Indices: 16373159--16373211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16373149 GTTGACTTAG
*
16373159 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16373185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16373211 G
1 G
16373212 TTCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16373590 original size:26 final size:26
Alignment explanation
Indices: 16373552--16373604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16373542 ATTGACTTAG
*
16373552 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16373578 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16373604 G
1 G
16373605 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16374268 original size:26 final size:26
Alignment explanation
Indices: 16374239--16374288 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16374229 GACTTAGGCA
*
16374239 TACGGAGTTTATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
16374265 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
16374289 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:16374622 original size:158 final size:158
Alignment explanation
Indices: 16374265--16374774 Score: 497
Period size: 158 Copynumber: 3.2 Consensus size: 158
16374255 AGTCTAAGCT
* * * * *
16374265 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAAGATCGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGTAGGACCGACAGCA
* * * *
16374330 CGTAG-GGGGGATCGAGCCGATCCCCAGATTGTGCATTATGCCTCTCTGGCCGGCTGAGCACCCG
66 CGTAGAGGGGGATCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTC-CGACGGCTGAGCACCCG
* * * * *
16374394 TACGCCCGTTTCATGGGTTGGCTTAGGCA
130 AACGCTCATTTCGTGGGTTGACTTAGGCA
* * ** * * * * *
16374423 TAGGGAGTTCATT-CCATGTCTAAG-CCCCATCTGGACTGAGGGTTATGGCAGTGGGACCGATAG
1 TACGGAGTTCATTCCCA-GTCTAAGATCAGATC-GGACCGAGGGTTGTGACAGTAGGACCGACAG
* ** *
16374486 CACGTAGAGAGGGATCGGGTCC-ATCCCCAGCTTGCACATTATGCCTCTCCGACGGCTCAGCACC
64 CACGTAGAGGGGGATCGGG-CCGATCCCCAGCTTGTGCATTATGCCTCTCCGACGGCTGAGCACC
*
16374550 CGAACGCTCATTTCGTGGGATGACTTAGGCA
128 CGAACGCTCATTTCGTGGGTTGACTTAGGCA
*
16374581 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGACAGTAGGACCAGCAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGTAGGACC-G-A-CA
* * * * *
16374646 GGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTTTGCATTCTGCCTCTCTGACCAG
63 -G--C-AC-GTA-G-A-GGGGGATCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCCGA-CGG
** * *
16374711 CTGAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCA
119 CTGAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCA
*
16374751 TACGGAGTTCATCCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16374775 TATACGGAGT
Statistics
Matches: 281, Mismatches: 52, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
157 7 0.02
158 125 0.44
159 41 0.15
160 3 0.01
161 1 0.00
162 1 0.00
164 1 0.00
165 2 0.01
166 2 0.01
167 1 0.00
168 3 0.01
169 35 0.12
170 59 0.21
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGTAGGACCGACAGCA
CGTAGAGGGGGATCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCCGACGGCTGAGCACCCGA
ACGCTCATTTCGTGGGTTGACTTAGGCA
Found at i:16374770 original size:684 final size:672
Alignment explanation
Indices: 16373412--16374759 Score: 1532
Period size: 684 Copynumber: 2.0 Consensus size: 672
16373402 ACCAGACCGC
* *
16373412 GGGTTATGGCAGCAGGACCAGCAGCAGGATCGACAGCACGTAAGGGGATCGGGTTGATCCCTGGC
1 GGGTTATGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGATCGGGCTGATCCCTGGC
* * ** * * *
16373477 TTGCGCATTCTGCCTCTCTGGTCGGCCACTCCGGCCGACTGAGTGCCCGTACACTCGTTTTGTGC
66 TTACGCATTATGCCTCTCTGACCGGCCACTCCGGCCGACTGAGCGCCCGCACACTCGTTTCGTGC
* *
16373542 ATTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGGGTTCATTCCCAGTCTAAGAT
131 ATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
16373607 CGAACCGGATCGAGGGTTGCGGCAGTAAGATTGACAGCATGCAGGGGGGATCGGGCCGATCTCGG
196 CGAACCGGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCAG
* * *
16373672 CTTACGCATTCTGCCTCTCCGACCGACTGAGCATCCGTACGCCAATTTCATGGGTTGGCTTAGGC
261 ATTACGCATTATGCCTCTCCGACCGACTGAGCACCCGTACGCCAATTTCATGGGTTGGCTTAGGC
* * *
16373737 ATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGATTGTGGTAGCGAGACCGGTAGC
326 ATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGATTATGGCAGCGAGACCGATAGC
* ** * * * **
16373802 ATACAAAGAGGGACCGAGCCAATCCTTGACTTGCGCATTATACCTCTTCGAATGGCTCAGTGCCC
391 ACACAAAGAGGGACCGAGCCAATCCCAGACTTGCACATTATACCTCTCCGAACGGCTCAGCACCC
* *
16373867 GAACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGA
456 GAACACTCATTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGA
* * * * *
16373932 CCGAGGGTTGTGATAGTAAGATCGACAGGACGTAGGGGGGATTGAGCCGGTCCCCGACTTGCCCA
521 CCGAGGGTTGTGATAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCCCA
* * * * *
16373997 TTCTGCCTCTTCGGTTGGGTAAGCACCCATACGTTCATTTCGTGGGTTGGCTTAGGCATACAGAG
586 TTCTGCCTCTTCAGCTGAGT-AGCACCCACACG-TCATTTCGTGGGTTGACTTAGGCATACAGAG
16374062 TTCATTCCATGTCTAAGCCCCAGTCGGACTGA
649 -T--TTCCA--T-T-A-CCCCAGTCGGACTGA
* * *
16374094 GGGTTGTGGCAGCAGGA-CTGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCGC
1 GGGTTATGGCAGCAGGACCAG-CAGCAGGATCGACAGCACGCA-A-GGGGATCGGGCTGATCC-C
* * * *
16374158 -GGCTTACGCATTATGCCTCT-TCGACCGGCCTCTCCGGTCGACTGAGCGTCCGCACGCTCGTTT
62 TGGCTTACGCATTATGCCTCTCT-GACCGGCCACTCCGGCCGACTGAGCGCCCGCACACTCGTTT
** * *
16374221 CGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCT
126 CGTGCATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
16374286 AAGATCGGATCGGACCGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGGGATCGAGCCGAT
191 AAGATCGAACCGGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGAT
** * * * **
16374351 CCCCAGATTGTGCATTATGCCTCTCTGGCCGGCTGAGCACCCGTACGCCCGTTTCATGGGTTGGC
256 -CCCAGATTACGCATTATGCCTCTCCGACCGACTGAGCACCCGTACGCCAATTTCATGGGTTGGC
* * *
16374416 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-ATCTGGACTGAGGGTTATGGCAGTGGGAC
320 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATC-GGACTGAGGATTATGGCAGCGAGAC
** * * * *
16374480 CGATAGCACGTAGAGAGGGATCGGGTCC-ATCCCCAG-CTTGCACATTATGCCTCTCCG-ACGGC
384 CGATAGCACACAAAGAGGGACCGAG-CCAAT-CCCAGACTTGCACATTATACCTCTCCGAACGGC
* *
16374542 TCAGCACCCGAACGCTCATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
447 TCAGCACCCGAACACTCATTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
16374607 CAGATCA-GACCGAGGGTTGTGACAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGATC
512 CAGA-CAGGACCGAGGGTTGTG--A-T------AGCA--A-GATCGACAGCACGCAGGGGGGATC
* ***
16374671 GGGCCGATCCCC-AGCTTTTGCATTCTGCCTCTCTGACCAGCTGAGT-GC-CCGCACAC-TCATT
564 GAGCCGATCCCCGA-CTTGCCCATTCTGCCTCT-T---CAGCTGAGTAGCACC-CACACGTCATT
*
16374732 TCGTGGGTTGACTTAGGCATACGGAGTT
623 TCGTGGGTTGACTTAGGCATACAGAGTT
16374760 CATCCCCAGT
Statistics
Matches: 556, Mismatches: 82, Indels: 45
0.81 0.12 0.07
Matches are distributed among these distances:
681 2 0.00
682 35 0.06
683 2 0.00
684 265 0.48
685 148 0.27
686 6 0.01
687 1 0.00
693 4 0.01
695 3 0.01
696 75 0.13
697 3 0.01
698 6 0.01
700 6 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (672 bp):
GGGTTATGGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGATCGGGCTGATCCCTGGC
TTACGCATTATGCCTCTCTGACCGGCCACTCCGGCCGACTGAGCGCCCGCACACTCGTTTCGTGC
ATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGAACCGGACCGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCAG
ATTACGCATTATGCCTCTCCGACCGACTGAGCACCCGTACGCCAATTTCATGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGATTATGGCAGCGAGACCGATAGC
ACACAAAGAGGGACCGAGCCAATCCCAGACTTGCACATTATACCTCTCCGAACGGCTCAGCACCC
GAACACTCATTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGA
CCGAGGGTTGTGATAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCCCA
TTCTGCCTCTTCAGCTGAGTAGCACCCACACGTCATTTCGTGGGTTGACTTAGGCATACAGAGTT
TCCATTACCCCAGTCGGACTGA
Found at i:16374786 original size:26 final size:26
Alignment explanation
Indices: 16374750--16374800 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16374740 TGACTTAGGC
16374750 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
16374776 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16374801 ATCTAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:16375715 original size:26 final size:26
Alignment explanation
Indices: 16375679--16375731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16375669 GTTGACTTAG
*
16375679 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16375705 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16375731 G
1 G
16375732 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16376231 original size:26 final size:26
Alignment explanation
Indices: 16376181--16376233 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16376171 GTTGGCTTAG
*
16376181 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
16376207 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16376233 G
1 G
16376234 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16376369 original size:183 final size:185
Alignment explanation
Indices: 16376022--16376392 Score: 478
Period size: 183 Copynumber: 2.0 Consensus size: 185
16376012 GTTGACTTAG
* * * *
16376022 GCATACGGAGTTCACTCCTAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAACAGGATCGACA
1 GCATACGGAGTTCACTCCCAATCTAAGATCAGACCAAACCGAGGGTTACAGCAACAGGATCAACA
* * *
16376087 ACACGGAGGGAGGGATCAGGCCAGTCCCTGGCTTGCACATTCTGCCTCTCCGACCGACTGAGTGC
66 ACACGCAGGGAGGGATCAGGCCAGTCCCTAGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGC
* *
16376152 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * ** *
16376207 GCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGGTCAACA
1 GCATACGGAGTTCACTCCCAATCTAAGATCAGACCAAACCGAGGGTTACAGCAACAGGATCAACA
* * * * * * *
16376272 GCACGCA-GG-GGGATCGGGTC-GATCCCTAGCTTGTACGTTTTGCCTCTCCGACCGGCTGAGCG
66 ACACGCAGGGAGGGATCAGGCCAG-TCCCTAGCTTGCACATTCTGCCTCTCCGACCGACTGAGCG
* **
16376334 TCCGCACACTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16376390 GCA
1 GCA
16376393 CCAGCCGGAC
Statistics
Matches: 159, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
182 1 0.01
183 97 0.61
184 2 0.01
185 59 0.37
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCACTCCCAATCTAAGATCAGACCAAACCGAGGGTTACAGCAACAGGATCAACA
ACACGCAGGGAGGGATCAGGCCAGTCCCTAGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGC
CCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:16376650 original size:353 final size:352
Alignment explanation
Indices: 16376129--16376767 Score: 838
Period size: 353 Copynumber: 1.8 Consensus size: 352
16376119 TTGCACATTC
* * * * *
16376129 TGCCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
1 TGCCTCTCCGACAGACTGAGCGCCCGCACACTCGTTTCATCGGTTGACTTAGGCATACGGAGTTC
* * **
16376194 ATTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGC
66 ATCCCATATCTAAGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGC
* * * * * ** * *
16376259 AGTAGGGTCAACAGCACGCAGGGGGATCGGGTCGATCCCTAGCTTGTACG-TTTTGCCTCTCCGA
131 AGCAGGATCAACAGCACACAGAGGGATCAGACCGATCCCCAGC-T-TACGATTCTGCCTCTCCGA
* **
16376323 CCGGCTGAGCGTCCGCACAC-TC-ATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
194 CCGGCTGAGC-ACC-CACACGTCGATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
** *
16376386 CTAAGCACCAGCCGGACTGAGGGTTGTGGTAGCAGGACCTGCAGCGGGATCGACAGCATGTAGAG
257 CTAAGCACCAGCAAGACCGAGGGTTGTGGTAGCAGGACCTGCAGCGGGATCGACAGCATGTAGAG
16376451 GGGGATCGGGCTGATCCCCGCTTCCATACTA
322 GGGGATCGGGCTGATCCCCGCTTCCATACTA
*
16376482 TGCCTCTCCGACAGGCTGAGCGCCCGCACACTCGTTTCATCGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGACAGACTGAGCGCCCGCACACTCGTTTCATCGGTTGACTTAGGCATACGGAGTTC
* * *
16376547 ATCCCA-ATCTAAGCATGCCGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGC-GA
66 ATCCCATATCTAAGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAG-
* **** *
16376610 TAGCAGGATTGGTAGCACACAGAAGGGATCAGACCGATCCCCGGCTTACGCATTCTGCCTCTCCG
130 CAGCAGGATCAACAGCACACAG-AGGGATCAGACCGATCCCCAGCTTACG-ATTCTGCCTCTCCG
* * *
16376675 ACCGGTTGAGCACCCACACGTCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
193 ACCGGCTGAGCACCCACACGTCGATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
*
16376740 TAAGCCCCAGCAAGACCGAGGGTTGTGG
258 TAAGCACCAGCAAGACCGAGGGTTGTGG
16376768 CAGTAGGATC
Statistics
Matches: 242, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
351 10 0.04
352 68 0.28
353 164 0.68
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (352 bp):
TGCCTCTCCGACAGACTGAGCGCCCGCACACTCGTTTCATCGGTTGACTTAGGCATACGGAGTTC
ATCCCATATCTAAGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGC
AGCAGGATCAACAGCACACAGAGGGATCAGACCGATCCCCAGCTTACGATTCTGCCTCTCCGACC
GGCTGAGCACCCACACGTCGATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGCAAGACCGAGGGTTGTGGTAGCAGGACCTGCAGCGGGATCGACAGCATGTAGAGGGGG
ATCGGGCTGATCCCCGCTTCCATACTA
Found at i:16377654 original size:26 final size:26
Alignment explanation
Indices: 16377624--16377676 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16377614 GTTGGCTTAG
*
16377624 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16377650 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16377676 G
1 G
16377677 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16377766 original size:11 final size:11
Alignment explanation
Indices: 16377746--16377778 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16377736 CCTGGGGCAC
16377746 CATCGTCGGAG
1 CATCGTCGGAG
*
16377757 CATTGTCGGAG
1 CATCGTCGGAG
16377768 CATCGTCGGAG
1 CATCGTCGGAG
16377779 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16378591 original size:26 final size:26
Alignment explanation
Indices: 16378542--16378594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16378532 GTTGGCTTAG
*
16378542 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16378568 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16378594 G
1 G
16378595 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16379255 original size:925 final size:925
Alignment explanation
Indices: 16377467--16379922 Score: 4135
Period size: 925 Copynumber: 2.7 Consensus size: 925
16377457 CCAGTCTAAC
* * ** ** * **
16377467 CATAAGGAGTTCATTCTCAGTCTAAGATCAGATCGGACCAAGGGTTGCAGCAGCAGGATCGACAG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAATATCGACAG
* * * ** * * *** * * * *
16377532 CACGCATGAGGGA-TCGGGCCGATCCCCAGCTTACACATTCTACCTCTCCGACCGGCTGAGCGCT
66 CATGCAGGGGGGACT-GGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCGCC
* * * ** * *
16377596 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCATACAGAGT
130 CGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGT
* * * *
16377661 TCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATACTGGGCTCAGGCATGTGCTGGTG-CAG
195 TCATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCA-
* ** * * ** * ** ****
16377725 CATTTTTTTCACCTGGGGCACCATCGTCGGAGCATTGTC-G-GAGCATCGTCGGAGAGCCTAACC
259 CATTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGGCG-GTATTGGG
* * *
16377788 GG---CGGC-ATT--GGGGTCCGGG-GTGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
323 GGTTTCGACAATTGGGGGGGCCGGGAG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
*
16377846 GCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACTCCCTTAAAGAGCGTTT
387 GCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCGTTT
16377911 GAAATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
452 GAAATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
16377976 GGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATTA
517 GGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATTA
16378041 CAGGGATCACCTCTACCAAATTTGGGGACAAAAATACAGGGATCATCTCTACCAAATACCAGACC
582 CAGGGATCACCTCTACCAAATTTGGGGACAAAAATACAGGGATCATCTCTACCAAATACCAGACC
* * * *
16378106 GAGGGTTGTGGTAGTGGGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCAGCTTGCACAT
647 GAGGGTTGTGGCAGTGGGACCGACAGCACATAGAGGGGGACCGAGCCAATCCCCAGCTTGCACAT
*
16378171 TATGCCTCTTCGGCTGGCTCAGCGCCCGTACGCCCGTTTTATGGGTTGGCTTAGGTATAGGGAGT
712 TACGCCTCTTCGGCTGGCTCAGCGCCCGTACGCCCGTTTTATGGGTTGGCTTAGGTATAGGGAGT
16378236 TCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGCCAGCAGGACTGACAGAATGCAGAGG
777 TCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGCCAGCAGGACTGACAGAATGCAGAGG
* *
16378301 GGGACCAGGCCATTCCTTGGCTTACGCATTATGCCTCTTCGGTTGGCTCAGCACCCGCACGCTCA
842 GGGACCAGGCCATTCCTCGACTTACGCATTATGCCTCTTCGGTTGGCTCAGCACCCGCACGCTCA
16378366 TTTCGTGGGTTAACTTATG
907 TTTCGTGGGTTAACTTATG
16378385 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAATATCGACAG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAATATCGACAG
16378450 CATGCAGGGGGGACTGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCGCCC
66 CATGCAGGGGGGACTGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCGCCC
16378515 GCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTT
131 GCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTT
16378580 CATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
196 CATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
16378645 TTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGGCGGTATTGGGGGT
261 TTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGGCGGTATTGGGGGT
16378710 TTCGACAATTGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
326 TTCGACAATTGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
16378775 TTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCGTTTGAAA
391 TTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCGTTTGAAA
16378840 TGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
456 TGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
16378905 ACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATAGTTTTATGCATGCCAACAAAAATTACAGG
521 ACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATTACAGG
16378970 GATCACCTCTACCAAATTTGGGGACAAAAATACAGGGATCATCTCTACCAAATACCAGACCGAGG
586 GATCACCTCTACCAAATTTGGGGACAAAAATACAGGGATCATCTCTACCAAATACCAGACCGAGG
*
16379035 GTTGTGGCAGTGGGACCGATAGCACATAGAGGGGGACCGAGCCAATCCCCAGCTTGCACATTACG
651 GTTGTGGCAGTGGGACCGACAGCACATAGAGGGGGACCGAGCCAATCCCCAGCTTGCACATTACG
* * *
16379100 CCTCTTCGGTTGGCTCAGCGCCCGTACGTCCGTTTTGTGGGTTGGCTTAGGTATAGGGAGTTCAT
716 CCTCTTCGGCTGGCTCAGCGCCCGTACGCCCGTTTTATGGGTTGGCTTAGGTATAGGGAGTTCAT
* *
16379165 TCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGCCAGCAGGACTGATAGAATGCAGAGGGGGA
781 TCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGCCAGCAGGACTGACAGAATGCAGAGGGGGA
*
16379230 CTAGGCCATTCCTCGACTTACGCATTATGCCTCTTCGGTTGGCTCAGCACCCGCACGCTCATTTC
846 CCAGGCCATTCCTCGACTTACGCATTATGCCTCTTCGGTTGGCTCAGCACCCGCACGCTCATTTC
16379295 GTGGGTTAACTTATG
911 GTGGGTTAACTTATG
16379310 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAATATCGACAG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAATATCGACAG
16379375 CATGCAGGGGGGACTGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCGCCC
66 CATGCAGGGGGGACTGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCGCCC
16379440 GCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTT
131 GCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTT
16379505 CATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
196 CATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
16379570 TTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGGCGGTATTGGGGGT
261 TTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGGCGGTATTGGGGGT
16379635 TTCGACAATTGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
326 TTCGACAATTGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * *
16379700 TTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCACTTTAAGAGCATTTGAGA
391 TTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCGTTTGAAA
*
16379765 TGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
456 TGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
16379830 ACAAAATCTTCTCCACTTCAAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAA-TACAGG
521 ACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATTACAGG
16379894 GATCACCTCTACCAAATTTGGGGACAAAA
586 GATCACCTCTACCAAATTTGGGGACAAAA
16379923 CTCTTTCTAA
Statistics
Matches: 1453, Mismatches: 74, Indels: 16
0.94 0.05 0.01
Matches are distributed among these distances:
918 254 0.17
919 8 0.01
920 10 0.01
922 3 0.00
923 3 0.00
924 35 0.02
925 1139 0.78
926 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (925 bp):
CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAATATCGACAG
CATGCAGGGGGGACTGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCGCCC
GCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACA
TTTTTTTCACCCGGGGCACCATCACCGGAGCATCGTCGGAGAGCCTAATCGGCGGTATTGGGGGT
TTCGACAATTGGGGGGGCCGGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCGTTTGAAA
TGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATAGTTTTGTGCATGCCAACAAAAATTACAGG
GATCACCTCTACCAAATTTGGGGACAAAAATACAGGGATCATCTCTACCAAATACCAGACCGAGG
GTTGTGGCAGTGGGACCGACAGCACATAGAGGGGGACCGAGCCAATCCCCAGCTTGCACATTACG
CCTCTTCGGCTGGCTCAGCGCCCGTACGCCCGTTTTATGGGTTGGCTTAGGTATAGGGAGTTCAT
TCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGCCAGCAGGACTGACAGAATGCAGAGGGGGA
CCAGGCCATTCCTCGACTTACGCATTATGCCTCTTCGGTTGGCTCAGCACCCGCACGCTCATTTC
GTGGGTTAACTTATG
Found at i:16379516 original size:26 final size:26
Alignment explanation
Indices: 16379467--16379519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16379457 GTTGGCTTAG
*
16379467 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16379493 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16379519 G
1 G
16379520 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16380692 original size:157 final size:157
Alignment explanation
Indices: 16380217--16380708 Score: 463
Period size: 159 Copynumber: 3.1 Consensus size: 157
16380207 CTCAGTCTAA
* * * * * *
16380217 GCATAAAGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCAAGGGTTACGGTAGCAGTACCGAC
1 GCATACAGAGTTCATTCCTAGTCTAAGATCA-AACCGGACCGAGGGTTACGGTAGCAGGACCGAT
** * * * *
16380281 AGCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCT-CTGGCCGGCTAAGTG
65 AGCACGCAGAGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCT-ACCGGCTAAG-C
* *
16380345 TCCGCACGCCCGTTTTGTGGGTTGGCTTAG
128 TCCGCACGCTCGTTTAGTGGGTTGGCTTAG
** * ** * ** * * * *
16380375 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAACCGGATTGAGGGCTATGGTAG-TGAGACCGGT
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTACGGTAGCAG-GACCGAT
* * ** *
16380439 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCGAACCGGCTCAGCT
65 AGCACGCAGAGGGGG-TCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTAAGCT
* * *
16380504 CC-CACGCGTAAGTTTAATGGGTTGACTTAG
129 CCGCACGC-T-CGTTTAGTGGGTTGGCTTAG
* * * *
16380534 GCATACAGAGCTCATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTACGGTAGCAGGACCGATA
* * * * *
16380599 GCACGCAG-GGGGGTCGGGCTGATCCCTGGCTTGTGCATTCTGCCTCTCCTACCGACTGAGCTCC
66 GCACGCAGAGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTAAGCTCC
* *
16380663 GACACGCTCGTTTCGTAGGTTGGCTTAG
131 G-CACGCTCGTTTAGTGGGTTGGCTTAG
*
16380691 GCATACGGAGTTCATTCC
1 GCATACAGAGTTCATTCC
16380709 ATGTTTAAGC
Statistics
Matches: 260, Mismatches: 65, Indels: 19
0.76 0.19 0.06
Matches are distributed among these distances:
157 79 0.30
158 67 0.26
159 113 0.43
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTACGGTAGCAGGACCGATA
GCACGCAGAGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTAAGCTCC
GCACGCTCGTTTAGTGGGTTGGCTTAG
Found at i:16380727 original size:26 final size:26
Alignment explanation
Indices: 16380691--16380760 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
16380681 GTTGGCTTAG
16380691 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTTTAA
*
16380717 GCATACGGAGTTCATTCCATGTTTAC
1 GCATACGGAGTTCATTCCATGTTTAA
16380743 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16380761 CAGTCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTTTAA
Found at i:16381120 original size:26 final size:26
Alignment explanation
Indices: 16381084--16381162 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
16381074 GTTGACTTAG
16381084 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16381110 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
16381136 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16381162 G
1 G
16381163 ATCGAACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16381182 original size:393 final size:381
Alignment explanation
Indices: 16380615--16381347 Score: 877
Period size: 393 Copynumber: 1.9 Consensus size: 381
16380605 AGGGGGGTCG
* ** * * * *
16380615 GGCTGATCCCTGGCTTGTGCATTCTGCCTCTCCTACCGACTGAGCTCCGACACGCTCGTTTCGTA
1 GGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCCCCGACACGCTCATTTCGTA
* * * * *
16380680 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCATGTTTACGC
66 GGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATCCCATGTTTAAGC
* * *
16380745 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTTCGATAGCGGACCAATAGTA
131 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGG--T---T-GCGG--C---AGCA
* * * * * *
16380810 GGATC-GACAGCACGGAGGGGGGGATCGGACCGATCCCTGTCTTTCGCATTCTGCCTCTCTGGCC
185 GGATCAG-CAGCACGCA-GGAGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
* * *
16380874 GACTGAGCACTCGCACGT-TCATTTCATGGGTTGGCTTAGGTATACAGAGGTCATTCCATGTCTA
248 GACTGAGCACCCGCAC-TCCCATTTCATGGGTTGGCTTAGGCATACAGAGGTCATTCCATGTCTA
*
16380938 AGCCCCAGTC-AGACTAAGGGTTGTGGCAGCAGGACCGACAGTGGGATCGGCAGCGCACAGAGAT
312 AGCCCCAGTCGA-ACCAAGGGTTGTGGCAGCAGGACCGACAGTGGGATCGGCAGCGCACAGAGAT
16381002 GGACCA
376 GGACCA
* * *
16381008 GGCTGATCCCCGGCTTACGCATTATGCCTCTCCGGCTGGCTGAGCGCCCG-CACGCTCATTTCGT
1 GGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGC-CCCGACACGCTCATTTCGT
*
16381072 TGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATCCCCA-GTTTA
65 AGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCAT-CCCATGTTTA
*
16381135 AGCATACGGAGTTCATTTCCAGTCTAAGATCGAACCAGAAC-GAGGGTTGCGGCAGCAGGATCAG
128 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAACTGAGGGTTGCGGCAGCAGGATCAG
* * * * * **
16381199 TAGCACGCAGGAGGGATTGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGGCCGGCTGAGTG
192 CAGCACGCAGGAGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCA
** *
16381264 CCCGCACTCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
257 CCCGCACTCCCATTTCATGGGTTGGCTTAGGCATACAGAGGTCATTCCATGTCTAAGCCCCAGTC
*
16381329 GAACCGAGGGTTGTGGCAG
322 GAACCAAGGGTTGTGGCAG
16381348 TGGTACCGAC
Statistics
Matches: 292, Mismatches: 41, Indels: 26
0.81 0.11 0.07
Matches are distributed among these distances:
380 1 0.00
381 117 0.40
382 16 0.05
383 1 0.00
385 1 0.00
387 4 0.01
388 1 0.00
391 1 0.00
393 138 0.47
394 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (381 bp):
GGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCCCCGACACGCTCATTTCGTA
GGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATCCCATGTTTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATCAGCAGC
ACGCAGGAGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCG
CACTCCCATTTCATGGGTTGGCTTAGGCATACAGAGGTCATTCCATGTCTAAGCCCCAGTCGAAC
CAAGGGTTGTGGCAGCAGGACCGACAGTGGGATCGGCAGCGCACAGAGATGGACCA
Found at i:16381636 original size:159 final size:158
Alignment explanation
Indices: 16381487--16381820 Score: 390
Period size: 159 Copynumber: 2.1 Consensus size: 158
16381477 AGATCGGATC
* * *
16381487 GATCTGAGGGTTGTGGTAGC-AGGA-TCGATAGCACGCAGTA-GGGGACCGGGCCGATCC-CTGA
1 GATC-GAGGGTTGTGGT-GCTAGGACT-GACAGCACACAG-AGGGGGACCAGGCCGATCCTC-GA
* * *
16381548 CTTGTGCATTCTGCCTCTCCGGTCAACTGA-GCACCTGCATGCCCGTTTCATGGGTTGGCTTAGG
61 CTTGCGCATTCTACCTCTCCGGTCAACTGACGC-CC-GCACGCCCGTTTCATGGGTTGGCTTAGG
*
16381612 CATAGGGAGATCATTCCATGTCTAAGCCCCAGCCG
124 CATACGGAGATCATTCCATGTCTAAGCCCCAGCCG
* * * *
16381647 GATCGGGGGTTGTGGTGCTAGGACTGGCAGCACACAGAGGGGGATCAGGTCGATCCTCGACTTGC
1 GATCGAGGGTTGTGGTGCTAGGACTGACAGCACACAGAGGGGGACCAGGCCGATCCTCGACTTGC
* ** * *
16381712 GCATTCTATCTCTCCGGTCGGCTGACTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
66 GCATTCTACCTCTCCGGTCAACTGAC-GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACG
* **
16381777 GAGCTCATTCCATGTCTAAGCCCCAGTTG
130 GAGATCATTCCATGTCTAAGCCCCAGCCG
16381806 GATCGAGGGTTGTGG
1 GATCGAGGGTTGTGG
16381821 CAGCAAGAAC
Statistics
Matches: 148, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
158 3 0.02
159 135 0.91
160 8 0.05
161 2 0.01
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (158 bp):
GATCGAGGGTTGTGGTGCTAGGACTGACAGCACACAGAGGGGGACCAGGCCGATCCTCGACTTGC
GCATTCTACCTCTCCGGTCAACTGACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGG
AGATCATTCCATGTCTAAGCCCCAGCCG
Found at i:16381984 original size:26 final size:26
Alignment explanation
Indices: 16381954--16382004 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16381944 GTTGACTTAG
16381954 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
16381980 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
16382005 TGATCGGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16382458 original size:13 final size:13
Alignment explanation
Indices: 16382440--16382464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16382430 TGCACATTCT
16382440 GCCTCTCCGATCA
1 GCCTCTCCGATCA
16382453 GCCTCTCCGATC
1 GCCTCTCCGATC
16382465 GGCTGAGCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.16, T:0.24
Consensus pattern (13 bp):
GCCTCTCCGATCA
Found at i:16382534 original size:26 final size:26
Alignment explanation
Indices: 16382504--16382556 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16382494 GTTGACTTAG
16382504 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16382530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16382556 G
1 G
16382557 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16382756 original size:158 final size:158
Alignment explanation
Indices: 16382530--16383051 Score: 490
Period size: 158 Copynumber: 3.3 Consensus size: 158
16382520 CCCAGTCTAA
** ** * * **
16382530 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCTTGTCTAAGCCCCA-ATCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * *
16382594 AGCACGCAGGGAGGACCGGGCCGATCCCCGGCTTGCACATTCTGTCTCTCCGACCGGCAGAGTGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTGC
*
16382659 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
16382688 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAATCAGACCTAGGGTTGTGGCAGC-GAGATCGAC
1 GCATACGGAGTTCATTCCTTGTCTAAGCCCCAATCAGACCAAGGGTTGCGGCAGCAG-GATCGAC
** * * * * * *
16382752 AGCACGCAGAGGGGGACAAGGCCAATCCCCGGTTTGCACAATATGCCTCTCCGGTCGACTTAGTG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTG
* * * * *
16382817 CCCGAACGCTCATTTCGTAGGTTGACTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * ** ** ** * **
16382847 GCATATGGAGTTCATTTCTAGTCCAAGATCGGATTGGACCAAGGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTTGTCTAAGCCCCAATCAGACCAAGGGTTGCGGCAGCAGGATCGACA
** * * * * * * **
16382912 GCACATAGGGGGGATCGAGCCGATCCCTGACATGCCCATTCTGCCTCTCCGATCGACTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTGCC
*
16382977 TGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
16383005 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTT
1 GCATACGGAGTTCATTCCTTGTCTAAGCCCCAATCAGACCAAGGGTT
16383052 ATGGTAGCAG
Statistics
Matches: 281, Mismatches: 79, Indels: 8
0.76 0.21 0.02
Matches are distributed among these distances:
157 1 0.00
158 157 0.56
159 122 0.43
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTTGTCTAAGCCCCAATCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16384442 original size:26 final size:27
Alignment explanation
Indices: 16384402--16384457 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
16384392 TATGGGTTAA
16384402 CTAAGGCATACAGAGTTCATTACCAGT
1 CTAAGGCATACAGAGTTCATTACCAGT
* *
16384429 CTAA-GCATATAGAGTTCATTCCCAGT
1 CTAAGGCATACAGAGTTCATTACCAGT
16384455 CTA
1 CTA
16384458 TGATTGGACC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATTACCAGT
Found at i:16384861 original size:159 final size:158
Alignment explanation
Indices: 16384440--16384853 Score: 424
Period size: 159 Copynumber: 2.6 Consensus size: 158
16384430 TAAGCATATA
* ** * ** * *
16384440 GAGTTCATTCCCAGTCTATGATTGGACCGGACTGAGGGTTGCGACAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCA
* * * * *
16384505 GGGGGGAAC-GGACGATCCCCGACTT-CTCATTTTGCCTCTCCGACCGGTTGAGCGCCCGCACGC
66 GGGGGGAACGGGACGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGC
* *
16384568 CTGTTTCGTGGGTTGGCTTAGGCATAGG
131 CTGTTTCGTGGGTTGACTTAGGCATACG
** * * * * *
16384596 GAGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGTAGCATGACCGACAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACG
* * * * * * *
16384659 CAGAGGGGGATCGGGCCAATGCCTGGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCTCGTC
64 CAG-GGGGGAACGGGACGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCG-C
* *
16384724 -TGCTTGTTTCGTGGGTTGACTTAGGCATACG
127 ACGCCTGTTTCGTGGGTTGACTTAGGCATACG
* * *
16384755 GAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAAGATTGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGC-
* *
16384820 AGGGGGGACCGGGTCGATCCCCGGCTTACGCATT
65 AGGGGGGAACGGGACGATCCCCGGCTTACGCATT
16384854 CTACCTCTTC
Statistics
Matches: 204, Mismatches: 45, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
155 3 0.01
156 46 0.23
157 8 0.04
158 15 0.07
159 126 0.62
160 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCA
GGGGGGAACGGGACGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGC
CTGTTTCGTGGGTTGACTTAGGCATACG
Found at i:16384892 original size:159 final size:160
Alignment explanation
Indices: 16384570--16384934 Score: 359
Period size: 159 Copynumber: 2.3 Consensus size: 160
16384560 CCGCACGCCT
* * * *
16384570 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCGAGGG
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCAGATGGACCGAGGG
* * * * * *
16384634 TTGTGGTAGCATGACCGACAGCACGCAGAGGGGGATCGGGCCAATGCCTGGCTTACGCATTATGC
66 TTGCGGTAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATAC
* * * * *
16384699 CTCTCCGATCGGCTCAGCGCTCGTCTGCTT
131 CTCTCCGATCGACTAAGCACCCGTCTGCTC
* * *
16384729 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACTGAGG
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCAGAT-GGACCGAGG
** * * * *
16384792 GTTGCGGTAGCAAGATTGATAGCACGCA-AGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCT
65 GTTGCGGTAGCAAGACCGACAGCACGCAGA-GGGGGACCGGGCCAATCCCCGGCTTACGCATTAT
* *
16384856 ACCTCTTCG-GCTGACTAAGCACCCGTAC-GCTC
129 ACCTCTCCGATC-GACTAAGCACCCGT-CTGCTC
* * * * *
16384888 GTTTCGT-GGATGGCTTGGGCATGCAGAGTTCATT-CCATGTCTAAGCA
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCA
16384935 TACAGAGTTC
Statistics
Matches: 167, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.02
158 34 0.20
159 126 0.75
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (160 bp):
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATCTAAGCACCAGATGGACCGAGGG
TTGCGGTAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATAC
CTCTCCGATCGACTAAGCACCCGTCTGCTC
Found at i:16384942 original size:26 final size:26
Alignment explanation
Indices: 16384906--16384958 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16384896 GATGGCTTGG
*
16384906 GCATGCAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16384932 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16384958 G
1 G
16384959 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16385607 original size:480 final size:484
Alignment explanation
Indices: 16384729--16385636 Score: 1161
Period size: 480 Copynumber: 1.9 Consensus size: 484
16384719 TCGTCTGCTT
*
16384729 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGT
1 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGT
* * * *
16384794 TGCGGTAGCAAGATTGATAGCACGCAAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTACC
66 TGCGGCAGCAAGATTGATAG-ACGCAAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACC
* * * *
16384859 TCTTCGGCTGACTAAGCACCCGTACGCTCGTTTCGTGGATGGCTTGGGCATGCAGAGTTCATTCC
130 TCTCCGGCAGACTAAGCACCCGCACGCTCGTTTC--GGATGG--TGGGCATACAGAGTTCATTCC
* * *
16384924 ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCAG
191 ATGTCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGATTGCGACAGCAG
** * * * *
16384989 GACCAGTAGCAGGATCGACAGCATGCAGAGGGGATCGGGCTAATCCCCGGCTTGCGCATTCTACC
256 GACCAACAGCAGGATCAACAGCACGCAGAGGGGACCGGCCTAATCCCCGGCTTGCGCATTCTACC
** * * * *
16385054 TCTCCGGTCGGTTGAGTGCCTACACGCCTGTTTCATGGGTTAGCTTAAGGATAGGGAGTTCGTTC
321 TCTCCAATCAGTTGAGCGCCCACACGCCTGTTTCATGGGTTAGCTTAAGGATAGGGAGTTCATTC
* * *
16385119 CATGTCTAAACCCTAGCCGAACTGATGGTTGTGGCAGCGGGATCGATAGCACACAGAGGGGGACC
386 CATGTCTAAACCCCAGCCGAACTGAGGGTTATGGCAGCGGGATCGATAGCACACAGAGGGGGACC
16385184 AGGCCTCTCTGGCCGGTTCAGCACCCACACACTC
451 AGGCCTCTCTGGCCGGTTCAGCACCCACACACTC
* * *
16385218 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTCTAAGATCGGATCGGACTGAGGGT
1 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGT
* * * * * * * *
16385283 TGTGGCAGTAGGATTGATAG-CGCACATGGGGGACTAGGCCGATCCCTGACTTGCGCATTCTGCC
66 TGCGGCAGCAAGATTGATAGACGCA-AGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACC
* * *
16385347 TCTCCGGTCAG-CTGAGCACCCGCACGCTCGTTTC-G-T-G-GGGCATACGGAGTTCATTTCATG
130 TCTCCGG-CAGACTAAGCACCCGCACGCTCGTTTCGGATGGTGGGCATACAGAGTTCATTCCATG
* * * *
16385407 TCTAAGCACATAGAGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGATTGCGGCAGCAGGA
194 TCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGATTGCGACAGCAGGA
* * * *
16385471 GCAACAGCAGGATCAACAGCACGTAGGGGGGACCGAGCCT-ATCCCCGGCTTGCGCATTCTGCCT
258 CCAACAGCAGGATCAACAGCACGCAGAGGGGACCG-GCCTAATCCCCGGCTTGCGCATTCTACCT
* * *
16385535 CTCCAATCAGTTGAGCGCCCGCACG-CTCGTTTCATGGGTTGGCTT-AGGCATATGGAGTTCATT
322 CTCCAATCAGTTGAGCGCCCACACGCCT-GTTTCATGGGTTAGCTTAAGG-ATAGGGAGTTCATT
* *
16385598 CCATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGCAGC
385 CCATGTCTAAACCCCAGCCGAACTGAGGGTTATGGCAGC
16385637 AGGACCGGCA
Statistics
Matches: 359, Mismatches: 54, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
479 6 0.02
480 206 0.57
481 3 0.01
483 1 0.00
484 1 0.00
485 1 0.00
487 4 0.01
488 58 0.16
489 79 0.22
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (484 bp):
GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGT
TGCGGCAGCAAGATTGATAGACGCAAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCT
CTCCGGCAGACTAAGCACCCGCACGCTCGTTTCGGATGGTGGGCATACAGAGTTCATTCCATGTC
TAAGCACACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGATTGCGACAGCAGGACCA
ACAGCAGGATCAACAGCACGCAGAGGGGACCGGCCTAATCCCCGGCTTGCGCATTCTACCTCTCC
AATCAGTTGAGCGCCCACACGCCTGTTTCATGGGTTAGCTTAAGGATAGGGAGTTCATTCCATGT
CTAAACCCCAGCCGAACTGAGGGTTATGGCAGCGGGATCGATAGCACACAGAGGGGGACCAGGCC
TCTCTGGCCGGTTCAGCACCCACACACTC
Found at i:16385796 original size:26 final size:26
Alignment explanation
Indices: 16385766--16385818 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16385756 GTTGACTTAG
16385766 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATATGGAGTTCATTC-CCAGTCTAA
16385792 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16385818 G
1 G
16385819 AGCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16386407 original size:184 final size:184
Alignment explanation
Indices: 16386084--16386458 Score: 480
Period size: 184 Copynumber: 2.0 Consensus size: 184
16386074 CAGCACTCGA
** * *
16386084 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCATACCGAGGGTT
1 AGTTCATCCCCAGTCTAAGCATAAAGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTT
*** *
16386149 GCGACAACAGGATCGGTAGCACACAGGGGGGACAGGGCCGATCCCCGACTTACACATTCTACCTC
66 GCGACAACAGGATCAACAGCACACAGGAGGGACAGGGCCGATCCCCGACTTACACATTCTACCTC
* * *
16386214 TCCGACCGGCTGAGTGCCTGCAAGCCCGTTTCGTGGGTTGACTTAGGCATACGG
131 TCCGACCGGCTGAGTGCCTACAAGCCCATTTCATGGGTTGACTTAGGCATACGG
* * * *
16386268 AGTTCATCCCCAGTCTAAGCATAAAGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTT
1 AGTTCATCCCCAGTCTAAGCATAAAGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTT
* * * ** * * * * *
16386333 GTGGCAGCAGGATCAACAGCACGGAGGAGGGACTGGGCCGATCCCTGGCTTGCACATTCTGCCTC
66 GCGACAACAGGATCAACAGCACACAGGAGGGACAGGGCCGATCCCCGACTTACACATTCTACCTC
* * * * *
16386398 TCTGACCGGCTGAGTGCTTACACGCCCATTTCATGGGTTGGCTTAGGCATAGGG
131 TCCGACCGGCTGAGTGCCTACAAGCCCATTTCATGGGTTGACTTAGGCATACGG
16386452 AGTTCAT
1 AGTTCAT
16386459 TCCATGTCTA
Statistics
Matches: 161, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 161 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
AGTTCATCCCCAGTCTAAGCATAAAGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTT
GCGACAACAGGATCAACAGCACACAGGAGGGACAGGGCCGATCCCCGACTTACACATTCTACCTC
TCCGACCGGCTGAGTGCCTACAAGCCCATTTCATGGGTTGACTTAGGCATACGG
Found at i:16386659 original size:159 final size:159
Alignment explanation
Indices: 16386286--16386676 Score: 409
Period size: 159 Copynumber: 2.5 Consensus size: 159
16386276 CCCAGTCTAA
* * *
16386286 GCATAAAGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCAACA
1 GCATAAAGAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
16386351 GCACG--GAGGAGGGACTGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCTGACCGGCTGAGTG
65 GCACGTAGAGGAGGGACTGGGCCGACCCCTGGCTTGCACATTATGCCTCTCCGACCGGCTCAGTG
* *
16386414 CTTACACGCCCATTTCATGGGTTGGCTTAG
130 CTTACACGCCCATTTCATGAGTTGACTTAG
** * ** * * *
16386444 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCATCCGGACCGAGGGTTATGGTAGCAGGACCGAC
1 GCATAAAGAGTTCATTCCA-GTCTAAGATCGGAT-CGGACCGAGGGTTGTGGCAGCAGGATCGAC
* **
16386508 AGCACGTAGAGG-GGGA-TCGGGCCGAACCCCT-GCTTGCGCATTATGCCTCTCCGGTCGGCTCA
64 AGCACGTAGAGGAGGGACT-GGGCCG-ACCCCTGGCTTGCACATTATGCCTCTCCGACCGGCTCA
* ***
16386570 GTGC-TAGCAGGCTTGTTTCATGAGTTGACTTAG
127 GTGCTTA-CACGCCCATTTCATGAGTTGACTTAG
* * * *
16386603 GCATACAGAGTTCATTCCTAGTCTAAGATTGGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATAAAGAGTTCATTCC-AGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
*
16386668 GCATGTAGA
65 GCACGTAGA
16386677 TGGGACCGGG
Statistics
Matches: 188, Mismatches: 36, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
157 7 0.04
158 53 0.28
159 115 0.61
160 13 0.07
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATAAAGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGAGGAGGGACTGGGCCGACCCCTGGCTTGCACATTATGCCTCTCCGACCGGCTCAGTGC
TTACACGCCCATTTCATGAGTTGACTTAG
Found at i:16386797 original size:26 final size:26
Alignment explanation
Indices: 16386761--16386813 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16386751 GTTGGCTTAG
16386761 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16386787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16386813 G
1 G
16386814 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16387170 original size:26 final size:26
Alignment explanation
Indices: 16387141--16387193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16387131 GTTGACTTAG
*
16387141 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16387167 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16387193 G
1 G
16387194 AGCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16387641 original size:158 final size:156
Alignment explanation
Indices: 16387167--16387668 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 156
16387157 CCCAGTCTAA
* * * *
16387167 GCATACGAAGTTCATTCCCA-GTCTAAGAGCGGACCAGACCGAGGGTTGTGGTAGCAGGATCAAC
1 GCATATGAAGTTCATT-CCATGTCTAAGACCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
16387231 AGCACGTA-GGGGGATCGGGCCGATCCCCGGATTACGCATTCTGCCTCTCCGACCGACTGAGCGC
65 AGCACGCAGGGGGGATCGGACCGATCCCAGGCTTACGCATTATGCCTCTCTGA-CGGCTGAGCGC
* *
16387295 CCGCATGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCAT-GGTTGGCTTAG
* * * * ** * * *
16387324 GCATAGGGAGTTCATTCCATTGTCTAAGCCCCAACGGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATATGAAGTTCATTCCA-TGTCTAAGACCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
16387389 ATCACACAGAGGGGGA-CCGAGTCGATCCCTGGCTTACGCATTATGCCTCTCCTGTCGGCTCAGC
65 AGCACGCAG-GGGGGATCGGA-CCGATCCCAGGCTTACGCATTATGCCTCT-CTGACGGCTGAGC
* * * *
16387453 CCCCGAACGCTCATTTCAATGGTTGACTTAG
127 GCCCGCACGCTCGTTTC-ATGGTTGGCTTAG
* * ** *
16387484 GTATATGAAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCAGTAGTAGGATCGAC
1 GCATATGAAGTTCATT-CCATGTCTAAGACCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* ** * *
16387548 AGCACGCAGGGGGGATCGGACCGGTCCCAGGCTTGTGCATTTTACCTCTCTGGACGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGACCGATCCCAGGCTTACGCATTATGCCTCTCT-GACGGCTGAGCGC
*
16387613 CCGCACGCTCGTTTCGTGGTTTGGCTTAG
129 CCGCACGCTCGTTTCATGG-TTGGCTTAG
* *
16387642 GCATATGGAGTTGATTCCATGTCTAAG
1 GCATATGAAGTTCATTCCATGTCTAAG
16387669 CATACCGAGT
Statistics
Matches: 268, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 22 0.08
158 118 0.44
159 45 0.17
160 73 0.27
161 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGAAGTTCATTCCATGTCTAAGACCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGACCGATCCCAGGCTTACGCATTATGCCTCTCTGACGGCTGAGCGCCC
GCACGCTCGTTTCATGGTTGGCTTAG
Found at i:16388043 original size:881 final size:854
Alignment explanation
Indices: 16386099--16388022 Score: 2007
Period size: 881 Copynumber: 2.2 Consensus size: 854
16386089 ATCCCCAGTC
* *
16386099 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCATACCGAGGGTTGCGACAACAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGATAACAGGATCG
** * * * * * *
16386164 GTAGCACACAGGGGGGACAGGGCCGATCCCCGACTTACACATTCTACCTCTCCGACCGGCTGAGT
66 ACAGCACGCAGGAGGGAC-GGGCCGATCCCCGACTTACACATTCTGCCTCTCCGGCCTGCTGAGC
* *
16386229 GCCTGCAAGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAAG
130 GCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAAG
* * * *
16386294 AGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCAACAGCACGGAG
195 AGTTCATTCCCAATCTAAGAGCGGACCAGACCGAGGGTTGTGGCAGCAGGATCAACAGCACGGAG
* * * * * * **
16386359 GAGGGACTGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCTGACCGGCTGAGTGCTTACACGCC
260 GAGGGACTGGGCCGATCCCCGGATTACACATTCTGCCTCTCCGACCGACTGAGCGCCCACACGCC
*
16386424 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCATCCGGACCGAGGG
325 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGG
* ** * * *
16386489 TTATGGTAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGAACCCCTGCTTGCGCATTATGC
390 TTATGGCAGCAGGACCGACAGCACACAGAGGGGGACCGAGCCGAACCCCTGCTTACGCATTATGC
** * * * **
16386554 CTCTCCGGTCGGCTCAGTGCTAGCAGGCTTGTTTCATGAGTTGACTTAGGCATACAGAGTTCATT
455 CTCTCCGGTCGGCTCAGCCCCAGAACGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATT
* * * * * * * * *
16386619 CCTAGTCTAAGATTGGATCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCATGTAGATGGGACC
520 CCCAGTCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGACC
** * * *
16386684 GGGTAGATCCCCAGCTTGTGCATTCTACCTTTTCTGTCAGTAGAGCGCCCGCACGCTCGTTTTGT
585 GGACAGATCCCCAGCTTGTGCATTCTACCTTCTCTGACAGTAGAGCGCCCGCACGCTCGTTTCGT
*
16386749 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
650 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAG
* * * * * ** * *
16386814 ATCAGATCGGACCGATGGTTGCGACAGTAGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGGC
715 ATCAGATCGAACCGAGGGTTACGACAGTAGGACCAGCAGCACGATCGACAGCACACAGGAGGGAC
* * * *
16386879 CAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGTGCCCGCACACTCGTTTCG
780 CAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCGCCCGCACACTCGTTTCA
*
16386944 TGGGTTGGCT
845 TGGGTTGACT
* ** * * ** * *
16386954 TAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAACAGGATC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAAACCGAGGGTTGCGATAACAGGATC
* * * * * * * *
16387018 GGCAACGAGATTGATAGCACGTAGAGGGAGAACGGGCTGATTCCTGGCTTACGCATTATGCCTCT
65 -G--AC-AG---CA-CGCA-G--GA-GG-G-ACGGGCCGATCCCCGACTTACACATTCTG-C-CT
* * * *
16387083 CTGACCGGCCTCTCCAACTGGCTGAGCGTCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACG
114 CT--CCGG------C--CT-GCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACG
* *
16387148 GAGTTCATCCCCAGTCTAAGCAT-ACGAAGTTCATTCCCAGTCTAAGAGCGGACCAGACCGAGGG
168 GAGTTCATCCCCAGTCTAAGCATAAAG-AGTTCATTCCCAATCTAAGAGCGGACCAGACCGAGGG
* * *
16387212 TTGTGGTAGCAGGATCAACAGCACGTAGG-GGGA-TCGGGCCGATCCCCGGATTACGCATTCTGC
232 TTGTGGCAGCAGGATCAACAGCACGGAGGAGGGACT-GGGCCGATCCCCGGATTACACATTCTGC
* * *
16387275 CTCTCCGACCGACTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
296 CTCTCCGACCGACTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
* * * * *
16387340 CCATTGTCTAAGCCCCAACGGGACCGAGGGTTGTGGCAGCGGGACCGACATCACACAGAGGGGGA
361 CCA-TGTCTAAACCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGACAGCACACAGAGGGGGA
* * * *
16387405 CCGAGTCG-ATCCCTGGCTTACGCATTATGCCTCTCCTGTCGGCTCAGCCCCCGAACGCTCATTT
425 CCGAGCCGAACCCCT-GCTTACGCATTATGCCTCTCCGGTCGGCTCAGCCCCAGAACGCTCATTT
* * *
16387469 CAATG-GTTGACTTAGGTATA-TGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTG
489 C-ATGAGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTG
* * * * * * *
16387532 CAGTAGTAGGATCGACAGCACGCAGGGGGGATCGGACCGGT-CCCAGGCTTGTGCATTTTACC-T
552 CAGCAGCAGGATCGACAGCACGCAGAGGGGACCGGACAGATCCCCA-GCTTGTGCATTCTACCTT
* * * *
16387595 CTCTGGACGGCT-GAGCGCCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATATGGAGTTGATTC
616 CTCT-GACAG-TAGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* *
16387659 CATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTACGACAGTA
679 CATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTACGACAGTA
** *** * **
16387724 GGACCAGCAGCACGATCGGTAGCACACTAGGAGGGATTGGGCCAATCCCCGGCTTGCTTATTCTG
744 GGACCAGCAGCACGATCGACAGCACAC-AGGAGGGACCAGGCCAATCCCCGACTTGCGCATTCTG
* * * *
16387789 CCTCTCCAGTCAGCCTTTTCGGTCGGGTGAGCGCCTGTACGCTCGTTTCATGGGTTGACT
808 CCTCTCC-G---G-C----CGAT----TGAGCGCCCGCACACTCGTTTCATGGGTTGACT
* *
16387849 TAAGCATACGGAGTTCATTCCCAGT-TAAAGATCGAACCAAATCGAGGGTTACGATAACAGGATC
1 TAAGCATACGGAGTTCATTCCCAGTCT-AAGATCGAACCAAACCGAGGGTTGCGATAACAGGATC
* * *
16387913 GACAGCACGCAGGAGGGATCGAGCCGATCCCCGACTTGCCCATTCTGCCTCTCCGGCCTGCTGAG
65 GACAGCACGCAGGAGGGA-CGGGCCGATCCCCGACTTACACATTCTGCCTCTCCGGCCTGCTGAG
* * * *
16387978 CGCCCGCTCGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTC
129 CGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
16388023 GTTCCATGTC
Statistics
Matches: 854, Mismatches: 161, Indels: 94
0.77 0.15 0.08
Matches are distributed among these distances:
854 3 0.00
855 50 0.06
856 1 0.00
859 2 0.00
862 1 0.00
863 2 0.00
864 1 0.00
866 1 0.00
867 2 0.00
868 21 0.02
869 46 0.05
870 6 0.01
872 4 0.00
878 5 0.01
879 1 0.00
880 109 0.13
881 442 0.52
882 59 0.07
883 3 0.00
884 2 0.00
886 2 0.00
887 4 0.00
888 1 0.00
891 5 0.01
892 2 0.00
894 2 0.00
895 74 0.09
896 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (854 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGCGATAACAGGATCG
ACAGCACGCAGGAGGGACGGGCCGATCCCCGACTTACACATTCTGCCTCTCCGGCCTGCTGAGCG
CCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAAGA
GTTCATTCCCAATCTAAGAGCGGACCAGACCGAGGGTTGTGGCAGCAGGATCAACAGCACGGAGG
AGGGACTGGGCCGATCCCCGGATTACACATTCTGCCTCTCCGACCGACTGAGCGCCCACACGCCC
ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGT
TATGGCAGCAGGACCGACAGCACACAGAGGGGGACCGAGCCGAACCCCTGCTTACGCATTATGCC
TCTCCGGTCGGCTCAGCCCCAGAACGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTC
CCAGTCTAAGATCGAACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGACCG
GACAGATCCCCAGCTTGTGCATTCTACCTTCTCTGACAGTAGAGCGCCCGCACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGA
TCAGATCGAACCGAGGGTTACGACAGTAGGACCAGCAGCACGATCGACAGCACACAGGAGGGACC
AGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCGCCCGCACACTCGTTTCAT
GGGTTGACT
Found at i:16388388 original size:26 final size:26
Alignment explanation
Indices: 16388352--16388404 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16388342 GTTGACTTAG
* *
16388352 GCATATGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16388378 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16388404 G
1 G
16388405 ATAGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16389835 original size:158 final size:157
Alignment explanation
Indices: 16389376--16389877 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 157
16389366 CCCAGTCTAA
* * * * * * *
16389376 GCATACGAAGTTCATTCTCAGTCTATGATCGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGTAGGATCGACA
* * ** *
16389441 GCACGCAGGGGGGACCGGGTAGATCCCCAGCTTGCGCATTCTGCCTCAT-CGGTCGGCTAACCGC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGACCGGCTAAGCGC
*
16389505 CCGCACACCTGTTTCATGGGTTGGCTTAG
130 CCGCACATC-GTTTCATGGGTTGGCTTAG
* * ** ** * * *
16389534 GCATAGGGGGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCCA-TGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGAGG-CAGTAGGATCGA
* ** * * * *
16389597 CAGCACGCAGAAGGGGATTGGGTCGATCCTCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGC
* * * *
16389662 GCCCACACACTCGTTTCGTGAGTTGACTTAG
128 GCCCGCACA-TCGTTTCATGGGTTGGCTTAG
* * * * *
16389693 GTATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGAGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGTAGGATCGACA
* * * *
16389758 ACACGCAGGGGGGACCGGGTCGGTCCCCGGCTTGCCCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCC
*
16389823 CGCACGTTCGTTTCATGGGTTGGCTTAG
131 CGCAC-ATCGTTTCATGGGTTGGCTTAG
16389851 GCATAC-GAGGTTCATT-CCATGTCTAAG
1 GCATACGGA-GTTCATTCCCA-GTCTAAG
16389878 CATACAGAGT
Statistics
Matches: 271, Mismatches: 63, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 7 0.03
158 143 0.53
159 117 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCC
CGCACATCGTTTCATGGGTTGGCTTAG
Found at i:16389881 original size:26 final size:26
Alignment explanation
Indices: 16389851--16389903 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16389841 GTTGGCTTAG
16389851 GCATAC-GAGGTTCATTCC-ATGTCTAA
1 GCATACAGA-GTTCATTCCTA-GTCTAA
16389877 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16389903 G
1 G
16389904 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16390082 original size:196 final size:196
Alignment explanation
Indices: 16389748--16390106 Score: 499
Period size: 196 Copynumber: 1.8 Consensus size: 196
16389738 TTGAGGCAGT
* ** * *
16389748 AGGATCGATAACACGCAGGGGGGACCGGGTCGGTCCCCGGCTTGCCCATTCTGCCTCTCCGACCG
1 AGGATCGATAACACGCAGGGGGGACCGGGCCAATCCCCGACTTGCCCATTCTCCCTCTCCGACCG
* * * * *
16389813 GCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGAGGTTCATTCCATGTCTAAG
66 GCTGAGCACCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGAGGTTCATCCCATGTCTAAG
*
16389878 CATACAGAGTTCA-TTCCTAGTCTAAGATCGAACCGGACAGAAGGTTGCGACAGCAAGACCAGGA
131 CATACAGAGTTCATTTCC-AATCTAAGATCGAACCGGACAGAAGGTTGCGACAGCAAGACCAGGA
16389942 GC
195 GC
* * * * ** * *
16389944 AGGATCGATGACACGTAGGGGGGATCGGGCCAATCCCTGACTTGCGTATTCTCCCTCTCTGGCCG
1 AGGATCGATAACACGCAGGGGGGACCGGGCCAATCCCCGACTTGCCCATTCTCCCTCTCCGACCG
16390009 GCTGAGCACCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACG-GAGTTCATCCCCA-GTCTA
66 GCTGAGCACCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGAG-GTTCAT-CCCATGTCTA
16390072 AGCATACAGAGTTCATTTCCAATCTAAGATCGAAC
129 AGCATACAGAGTTCATTTCCAATCTAAGATCGAAC
16390107 TGGATCGAGG
Statistics
Matches: 141, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
195 1 0.01
196 133 0.94
197 7 0.05
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
AGGATCGATAACACGCAGGGGGGACCGGGCCAATCCCCGACTTGCCCATTCTCCCTCTCCGACCG
GCTGAGCACCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGAGGTTCATCCCATGTCTAAG
CATACAGAGTTCATTTCCAATCTAAGATCGAACCGGACAGAAGGTTGCGACAGCAAGACCAGGAG
C
Found at i:16390097 original size:26 final size:26
Alignment explanation
Indices: 16390047--16390099 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16390037 GTTGACTTAG
* *
16390047 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
**
16390073 GCATACAGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16390099 G
1 G
16390100 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16390627 original size:25 final size:24
Alignment explanation
Indices: 16390580--16390627 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
16390570 GTTGGCTTAG
*
16390580 GCATACGAAGTCATATCCATCTAA
1 GCATACGAAGTCATACCCATCTAA
16390604 GCATACGAAGTTCAT-CCCAGTCTA
1 GCATACGAAG-TCATACCCA-TCTA
16390628 GTGAATCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (24 bp):
GCATACGAAGTCATACCCATCTAA
Found at i:16391474 original size:26 final size:26
Alignment explanation
Indices: 16391444--16391496 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16391434 GTTGACTTAG
16391444 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16391470 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16391496 G
1 G
16391497 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16392485 original size:26 final size:26
Alignment explanation
Indices: 16392435--16392487 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16392425 GTTGGCTTAG
***
16392435 GCATACAGAGTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
16392461 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16392487 G
1 G
16392488 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16392839 original size:26 final size:26
Alignment explanation
Indices: 16392802--16392854 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16392792 GTTGACTTAG
*
16392802 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
16392828 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16392854 G
1 G
16392855 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16393737 original size:26 final size:26
Alignment explanation
Indices: 16393701--16393753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16393691 GTTGGCTTAG
16393701 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16393727 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16393753 G
1 G
16393754 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16393752 original size:399 final size:399
Alignment explanation
Indices: 16393011--16393774 Score: 971
Period size: 399 Copynumber: 1.9 Consensus size: 399
16393001 CCATGTCTAA
* * * *
16393011 GCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGGCATCAAGCAGAGGACGATCGGGCCGATC
1 GCCCCAGTCGGACCGAGGGTTATGACAACGGGATCGGCAGCAAGCAGAGGACGATCGGGCCGATC
* * * ** *
16393076 CCCGACTTGAGCATTATGCCATTCTGACCGGCTCAGTGCCCGAACACTTGTTTCGTGCGTTGACT
66 CCCGACTTGAGCATTATGCCACTCCGACCGGCTCAGTGCCCAAACACTCATTTCGTACGTTGACT
* * * * * **
16393141 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAAGGTTGCGGTAGTAGGATCG
131 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACTCAAGGTTGCGGCAACAGGATCG
* * * * * *** * *** *
16393206 ATAGTACGCAAGGGGGATTGGGTCGATCCTGGGCTTGTGCATTCTGTCTCCCCGGTTGGCTGAGA
196 ACAGCACGCAAGGAGGATCGGGTCGATCCTGAGCTTACACATTCTGCCTCCCCGACCGACTGAGA
*
16393271 GCCCACACACTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGA
261 GCCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGA
*
16393336 AGTTCATTCCTAGTCTAAAATCAAACCAGACCGAGGGTTGTGGCAGTCGAACAAGCAGCACGCAG
326 AGTTCATTCCCAGTCTAAAATCAAACCAGACCGAGGGTTGTGGCAGTCGAACAAGCAGCACGCAG
16393401 GGAGACTGT
391 GGAGACTGT
* * *
16393410 GCCCCAGTCGGACCGAGGGTTATGACAACGGGA-CTGGCAGCACGCAGGGGATGATCGGGCCGAT
1 GCCCCAGTCGGACCGAGGGTTATGACAACGGGATC-GGCAGCAAGCAGAGGACGATCGGGCCGAT
* * *
16393474 CCCTGGCTTGAGCATTATGCCACTCCGACCGGCTCAGTGCTCAAACACTCATTTCGTACGTTGAC
65 CCCCGACTTGAGCATTATGCCACTCCGACCGGCTCAGTGCCCAAACACTCATTTCGTACGTTGAC
*
16393539 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGAAC-CAAGGGTTGTGGCAACAGGA
130 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-GAACTCAA-GGTTGCGGCAACAGGA
* * * * ** *
16393602 TTGACAGCATGC-CGGAAGGATCGGGTCGGTCCCT-ATTTTACACATTCTGCCTCTCCGACCGAC
193 TCGACAGCACGCAAGG-AGGATCGGGTCGAT-CCTGAGCTTACACATTCTGCCTCCCCGACCGAC
* * * *
16393665 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
256 TGAGAGCCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * *
16393730 TATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
321 TATGAAGTTCATTCCCAGTCTAAAATCAAACCAGACCGAGGGTTG
16393775 CAATAGCAAG
Statistics
Matches: 307, Mismatches: 53, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
398 6 0.02
399 298 0.97
400 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (399 bp):
GCCCCAGTCGGACCGAGGGTTATGACAACGGGATCGGCAGCAAGCAGAGGACGATCGGGCCGATC
CCCGACTTGAGCATTATGCCACTCCGACCGGCTCAGTGCCCAAACACTCATTTCGTACGTTGACT
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACTCAAGGTTGCGGCAACAGGATCG
ACAGCACGCAAGGAGGATCGGGTCGATCCTGAGCTTACACATTCTGCCTCCCCGACCGACTGAGA
GCCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGA
AGTTCATTCCCAGTCTAAAATCAAACCAGACCGAGGGTTGTGGCAGTCGAACAAGCAGCACGCAG
GGAGACTGT
Found at i:16394098 original size:26 final size:26
Alignment explanation
Indices: 16394068--16394120 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16394058 GTTGACTTAG
16394068 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16394094 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16394120 G
1 G
16394121 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16394131 original size:367 final size:355
Alignment explanation
Indices: 16393639--16394318 Score: 851
Period size: 355 Copynumber: 1.9 Consensus size: 355
16393629 GGTCCCTATT
* * ** * *
16393639 TTACACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
1 TTACACATTATGCCTCTCCGACCGACTGAGCCCCCAAACGCTCGTTTCATGGGTTGACTTAGGCA
* * **
16393704 TACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
66 TACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAAGA
* * *
16393769 GGGTTGCAATAGCAAGACTAGCAGCAGGATCGGTAGCACGTAGAAGGGACCAAGTCGATCCCCAA
131 GGGTTGC----G---G--T---AGCAGGATCGATAGCACGCAGAAGGGACCAAGCCGATCCCCAA
* * *
16393834 CTTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCATG-CTCGTTTCATGGGTTGGCTTAGG
184 CTTGTGCATTCTGCCTCTCCGGCCAACTGAGCACCCGCACGCCT-GTTTCATGGGTTGGCTTAAG
* * *
16393898 CATACGGAGTTCATTCCATGTCTAAGCAATAGCCGCACCGAGGGTTGTGGTAGCAGGACCAGCAG
248 CATACGGAGCTCATTCCATGTCTAAGCAACAGCCGCACCAAGGGTTGTGGTAGCAGGACCAGCAG
16393963 CGGGATTGATAGAACGCAGAGGGGTATCGGGCTGATCCCTGGC
313 CGGGATTGATAGAACGCAGAGGGGTATCGGGCTGATCCCTGGC
* * * *
16394006 TTACGCATTATGCCTCTCCGATCGGCTGAGCCCCCAAACTCTCGTTTCATGGGTTGACTTAGGCA
1 TTACACATTATGCCTCTCCGACCGACTGAGCCCCCAAACGCTCGTTTCATGGGTTGACTTAGGCA
* *
16394071 TACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGAAAG
66 TACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAAG
* ** * **
16394135 AGGGTTGCGGTAGTAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTC
130 AGGGTTGCGGTAGCAGGATCGATAGCACGCAGAAGGGACCAAGCCGATCCCCAACTTGTGCATTC
* * * *
16394200 TGCCTCTCCGGCCAACTGAGCGCCTGCACGCCTGTTTCGTGGGTTGGCTTAAGCATAGGGAGCTC
195 TGCCTCTCCGGCCAACTGAGCACCCGCACGCCTGTTTCATGGGTTGGCTTAAGCATACGGAGCTC
** * * * *
16394265 ATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGTAGCGGGACCGGCAGC
260 ATTCCATGTCTAAGCAACAGCCGCACCAAGGGTTGTGGTAGCAGGACCAGCAGC
16394319 ACACAAAGGA
Statistics
Matches: 270, Mismatches: 41, Indels: 16
0.83 0.13 0.05
Matches are distributed among these distances:
355 145 0.54
356 2 0.01
358 1 0.00
360 1 0.00
363 1 0.00
367 117 0.43
368 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
TTACACATTATGCCTCTCCGACCGACTGAGCCCCCAAACGCTCGTTTCATGGGTTGACTTAGGCA
TACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAAGA
GGGTTGCGGTAGCAGGATCGATAGCACGCAGAAGGGACCAAGCCGATCCCCAACTTGTGCATTCT
GCCTCTCCGGCCAACTGAGCACCCGCACGCCTGTTTCATGGGTTGGCTTAAGCATACGGAGCTCA
TTCCATGTCTAAGCAACAGCCGCACCAAGGGTTGTGGTAGCAGGACCAGCAGCGGGATTGATAGA
ACGCAGAGGGGTATCGGGCTGATCCCTGGC
Found at i:16394606 original size:26 final size:26
Alignment explanation
Indices: 16394569--16394621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16394559 GTTGGCTTAG
*
16394569 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16394595 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16394621 G
1 G
16394622 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16394997 original size:26 final size:26
Alignment explanation
Indices: 16394950--16395000 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16394940 TGACTTAGGC
*
16394950 ATACAGAGTTCATCCCTTGTCTAAGT
1 ATACAGAGTTCATCCCTAGTCTAAGT
*
16394976 ATACGGAGTTCATTCCC-AGTCTAAG
1 ATACAGAGTTCA-TCCCTAGTCTAAG
16395001 ATCGGATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATCCCTAGTCTAAGT
Found at i:16398193 original size:23 final size:23
Alignment explanation
Indices: 16398163--16398211 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
16398153 AGCAGTTCTC
16398163 CCTCTTGACAAACAGCTTGTACG
1 CCTCTTGACAAACAGCTTGTACG
*
16398186 CCTCTTGACAAACAGCTTGTGCG
1 CCTCTTGACAAACAGCTTGTACG
16398209 CCT
1 CCT
16398212 ACAACACCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (23 bp):
CCTCTTGACAAACAGCTTGTACG
Found at i:16401793 original size:26 final size:26
Alignment explanation
Indices: 16401756--16401808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16401746 GTTGACTTAG
*
16401756 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16401782 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16401808 G
1 G
16401809 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16402262 original size:158 final size:157
Alignment explanation
Indices: 16401782--16402283 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 157
16401772 CCCAGTCTAA
* ** *
16401782 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGACTGGACCGAGGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAC-GGACCGAGGGTTGCGGTAGCAGGATCGAT
* ** * ** * * *
16401846 AGCACATAGGGGGGACCGGGCCAATCCTCGACTTGTTCATTCTACCTCTCCGATCGGCTGAGCAC
64 AGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCAC
* * * *
16401911 CCGCACGCCCGTTTCGTTGATTGGCTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
16401940 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * * * * * **
16402005 GCACGCAGAGGGGGATCGGG-TCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTG
65 GCACGTAG-GGGGGACCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCA
* * * *
16402069 CCTGTACACTCGTTTCGTGGGTTGACTTAG
128 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* *
16402099 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * * *
16402163 AGCACGTAGGGGGGACCGGGCTGATCCCCGACTTACGGATTCTGCCTCTTCGGTTGGCCCAACAC
64 AGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCAC
*
16402228 CCGAACGCTTGTTTCGTGGGTTGGCTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
16402257 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16402284 CATACAGAGT
Statistics
Matches: 268, Mismatches: 68, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 140 0.52
159 119 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACCGAGGGTTGCGGTAGCAGGATCGATAG
CACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCACCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16402293 original size:26 final size:26
Alignment explanation
Indices: 16402257--16402309 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16402247 GTTGGCTTAG
16402257 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16402283 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16402309 G
1 G
16402310 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16402680 original size:26 final size:26
Alignment explanation
Indices: 16402629--16402682 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16402619 TGGGTTGACT
*
16402629 TAGGCATACGGAGTTCATCCGTAGTC
1 TAGGCATACGGAGTTCATCCGCAGTC
16402655 TAGGCATACGGAGTTCATTCC-CAGTC
1 TAGGCATACGGAGTTCA-TCCGCAGTC
16402681 TA
1 TA
16402683 AGATCGGACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCGCAGTC
Found at i:16403359 original size:26 final size:26
Alignment explanation
Indices: 16403313--16403365 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16403303 GTAGACTTAG
*
16403313 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
**
16403339 GCATACGGAGTTCATTTCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
16403365 G
1 G
16403366 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:16403659 original size:159 final size:158
Alignment explanation
Indices: 16403373--16403767 Score: 348
Period size: 159 Copynumber: 2.5 Consensus size: 158
16403363 AAGATCAGAT
* * *
16403373 CGGATCGAGGGTTACGGTAGCAGGATCCACAGCACGCAGGGGGGATCGGGCCGATCCCCCGCTTG
1 CGGACCGAGGGTTACGGTAGCAGGATCCACAGCACGCAGGGGGGACCGAGCCGATCCCCCGCTTG
* * * * * * *
16403438 TGCATTCTGCCTCTCTGGCCAGCTGAGCACCCGCGCACCCGTTTCGTGGGTTGGCTTAGGCATAG
66 TGCATTATGCCTCTCTGCCCAGCTCAGCACCCGCACACCCATTTCGTGGATTGACTTAGGCATAG
16403503 GGAGTTCATTCCATGTCTAAGCCCCAGC
131 GGAGTTCATTCCATGTCTAAGCCCCAGC
** * * * * *
16403531 CGGACCGAGGGTTGTGGTAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCCGATCCTCGGCTT
1 CGGACCGAGGGTTACGGTAGCAGGATCCACAGCACGCAG-GGGGGACCGAGCCGATCCCCCGCTT
* * * * * *
16403596 GTGCATTATTCCT-TTTCGCCCGGCTCAGCGCCCGCACGCTCATTTCGTGGATTGACTTAGGCAT
65 GTGCATTATGCCTCTCT-GCCCAGCTCAGCACCCGCACACCCATTTCGTGGATTGACTTAGGCAT
*** * ** *
16403660 ACAAAGTTCATTCC-CGTCTAAG-ATCAGAT
129 AGGGAGTTCATTCCATGTCTAAGCCCCAG-C
* ** * * * * * * * * *
16403689 AGGATTGA-GGTTGCGGCAGCAGGATCGATAGCACACAGGGGGGATCGGGCTGATCCCCAGCTTG
1 CGGACCGAGGGTTACGGTAGCAGGATCCACAGCACGCAGGGGGGACCGAGCCGATCCCCCGCTTG
*
16403753 TGCATTCTGCCTCTC
66 TGCATTATGCCTCTC
16403768 CGGCCGGTTG
Statistics
Matches: 186, Mismatches: 47, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
156 31 0.17
157 28 0.15
158 47 0.25
159 80 0.43
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CGGACCGAGGGTTACGGTAGCAGGATCCACAGCACGCAGGGGGGACCGAGCCGATCCCCCGCTTG
TGCATTATGCCTCTCTGCCCAGCTCAGCACCCGCACACCCATTTCGTGGATTGACTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGC
Found at i:16404429 original size:159 final size:156
Alignment explanation
Indices: 16404226--16404534 Score: 352
Period size: 159 Copynumber: 2.0 Consensus size: 156
16404216 GAGATCGGAT
* ** ** *
16404226 TCGGACTGAGGGTTGCGGCAGTAGGATCGGTAGCACGCAGGGGGACAGGGCCCAAT-CCTGGGTT
1 TCGGACTGAGGGTTGCGGCAATAGGATCGACAGCACGCAGGGGGACAGGG-CCAATCCCCAGCTT
* * * *
16404290 GCGCATTCTGCCTCTCCGATCGGCTGAGCACCCTCATGCCCATTGCGTGGGTT-AGCTTAGGCAG
65 GCGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCCCATTGCGTGGGTTGA-CTTAGGCAG
16404354 AGGGAGTTCATTCCATGTCTAAGCCCCAG
129 AGGGAGTTCATTCCA-GTCTAAGCCCCAG
* ** *
16404383 TCGGACTGAGGGTTGTGGCAATAGGATCGACAGCACGCAGAGGGGGATTGGGCCGATCCCCAGCT
1 TCGGACTGAGGGTTGCGGCAATAGGATCGACAGCACGC--AGGGGGACAGGGCCAATCCCCAGCT
* * * * * * * *
16404448 TGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCAT
64 TGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCCCATTGCGTGGGTTGACTTAGGCAG
*
16404513 ATGGAGTTCATTCCAGTCTAAG
129 AGGGAGTTCATTCCAGTCTAAG
16404535 AATCAGACCA
Statistics
Matches: 125, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
157 34 0.27
158 11 0.09
159 79 0.63
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
TCGGACTGAGGGTTGCGGCAATAGGATCGACAGCACGCAGGGGGACAGGGCCAATCCCCAGCTTG
CGCATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCCCATTGCGTGGGTTGACTTAGGCAGAG
GGAGTTCATTCCAGTCTAAGCCCCAG
Found at i:16404552 original size:159 final size:162
Alignment explanation
Indices: 16404400--16404696 Score: 377
Period size: 159 Copynumber: 1.9 Consensus size: 162
16404390 GAGGGTTGTG
* ** *
16404400 GCAATAGGATCGACAGCACGC-AGAGGGGGATTGGGCCGATCCCCAGCTTGCGCATTATGCCTCT
1 GCAATAGGATCGACAGCACACAAGA-GGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCT
* * * * * * *
16404464 TCGGTCGGCTCAGC-GC-CCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCC
65 CCAGTCGACTCAGCACCACCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAATCC
16404527 A-GTCTAAGAATCAGACCAGATTGAGGGATGCA
130 ATGTCTAAGAATCAGACCAGATTGAGGGATGCA
* * * * * * *
16404559 GCAGTAGGATCGATAGCTCACAAGAGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTC
1 GCAATAGGATCGACAGCACACAAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTC
* *
16404624 CAGTCGACTGAGCACCACCACACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCAATCCA
66 CAGTCGACTCAGCACCACCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAATCCA
16404689 TGTCTAAG
131 TGTCTAAG
16404697 CATACGGAGT
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
159 59 0.52
160 4 0.04
161 44 0.39
162 7 0.06
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (162 bp):
GCAATAGGATCGACAGCACACAAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTC
CAGTCGACTCAGCACCACCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAATCCA
TGTCTAAGAATCAGACCAGATTGAGGGATGCA
Found at i:16405875 original size:157 final size:157
Alignment explanation
Indices: 16405412--16405910 Score: 576
Period size: 159 Copynumber: 3.2 Consensus size: 157
16405402 CCATCTAAGA
* * *
16405412 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGATTGCGGAAGCAGGATCGATAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTTC-GAAGCAGGATCGACAG
* * * * * * * * *
16405476 CACGCATGGGGGACCGGGCCGATCCCCAGCTTGCACATTTTACCTCTCCGGCCGACTGAGCTCCC
64 CATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCC
* *
16405541 GCACGCCCGTTTCATGGGTTGGCTTAGGC
129 GCATGCTCGTTTCATGGGTTGGCTTAGGC
** * * * ** * *
16405570 ATA-GCGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAGGGGGACCGGCA
1 ATACG-GAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTT-TCGAAGCAGGATCGACA
* * *
16405633 GCATGCAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGGCTCAGCGC
63 GCATGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGC
* *
16405698 CCGCATGCTTGTTTCATGGGTTGACTTAGGC
127 CCGCATGCTCGTTTCATGGGTTGGCTTAGGC
*
16405729 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTTCGATAGCAGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTTCGA-AGCAGGATCGACAG
* * * * *
16405793 CATGCAGGGGGGA-CGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGGCTCAGCGCCC
64 CATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCC
*
16405857 GCATGCTCGTTTCGTGGGTTGGCTTAGGC
129 GCATGCTCGTTTCATGGGTTGGCTTAGGC
16405886 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
16405911 CATATAGAGT
Statistics
Matches: 283, Mismatches: 48, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
156 3 0.01
157 95 0.34
158 57 0.20
159 124 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTTCGAAGCAGGATCGACAGCA
TGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCGC
ATGCTCGTTTCATGGGTTGGCTTAGGC
Found at i:16406213 original size:156 final size:157
Alignment explanation
Indices: 16405962--16406250 Score: 379
Period size: 156 Copynumber: 1.8 Consensus size: 157
16405952 GGGTTTCGAC
* * *
16405962 AGCAGGATCTACAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCGTATTATGCCTCTTCG
1 AGCAGGATCGACAGCATGCA-AGGGGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCG
* *
16406027 GCCGACTCAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTA-TACGTACGGAGTTCATTCCA-GT
65 ACCGACACAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTAGTA--TACGGAGTTCATTCCATGT
16406090 CTAATATCGAATTGGACTGAGGGTTACAGT
128 CTAATATCGAATTGGACTGAGGGTTACAGT
* * * *
16406120 AGCAGGATCGACAGCATGC-AGGGGGACC-AGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCATGCAAGGGGGACCGAGCCA-ATCCCCGACTTGCGCATTATGCCTCTCCG
* * * * *
16406183 ACCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTC
65 ACCGACACAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTA-GTATACGGAGTTCATTCCATGTC
16406248 TAA
129 TAA
16406251 GCATACGGAG
Statistics
Matches: 113, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
155 4 0.04
156 83 0.73
157 6 0.05
158 20 0.18
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
AGCAGGATCGACAGCATGCAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCGA
CCGACACAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTAGTATACGGAGTTCATTCCATGTCTA
ATATCGAATTGGACTGAGGGTTACAGT
Found at i:16406214 original size:341 final size:342
Alignment explanation
Indices: 16405631--16406268 Score: 926
Period size: 341 Copynumber: 1.9 Consensus size: 342
16405621 GGGGGACCGG
* * * * * *
16405631 CAGCATGCAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGGCTCAGC
1 CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGACTCAGC
* *** *
16405696 GCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
66 GCCCGCACGCGCCTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
16405761 CGGACTGAGGGTTTCGATAGCAGGATCGACAGCATGCAGGGGGGACGGGTCGATCCCCGGCTTAC
131 CGGACTGAGGGTTACGATAGCAGGATCGACAGCATGCAGGGGGGACAGGTCGATCCCCGGCTTAC
* * *
16405826 GCATTCTGCCTCTCTGACCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
196 GCATTCTGCCTCTCCGACCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
16405891 GAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTATGATTAGACCGGACCAAGGGT
261 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTATGATTAGACCGGACCAAGGGT
16405956 TTCGACAGCAGGATCTA
326 TTCGACAGCAGGATCTA
** *
16405973 CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCGTATTATGCCTCTTCGGCCGACTCAGC
1 CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGACTCAGC
* * * *
16406038 GCCCGCACGCGCCTTTCGTGGGTTGACTTATACGTACGGAGTTCATT-CCAGTCTAATATC-GAA
66 GCCCGCACGCGCCTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAG-A
** *
16406101 TTGGACTGAGGGTTAC-AGTAGCAGGATCGACAGCATGCA-GGGGGACCAGG-CAGATCCCTGGC
130 CCGGACTGAGGGTTACGA-TAGCAGGATCGACAGCATGCAGGGGGGA-CAGGTC-GATCCCCGGC
* * *
16406163 TTGCGCATTCTGCCTCTCCGACCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTA
192 TTACGCATTCTGCCTCTCCGACCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
*
16406228 TACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
257 TACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
16406269 TAGTATAATA
Statistics
Matches: 261, Mismatches: 31, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
340 9 0.03
341 157 0.60
342 95 0.36
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (342 bp):
CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGACTCAGC
GCCCGCACGCGCCTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACTGAGGGTTACGATAGCAGGATCGACAGCATGCAGGGGGGACAGGTCGATCCCCGGCTTAC
GCATTCTGCCTCTCCGACCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTATGATTAGACCGGACCAAGGGT
TTCGACAGCAGGATCTA
Found at i:16406970 original size:25 final size:25
Alignment explanation
Indices: 16406936--16407011 Score: 125
Period size: 25 Copynumber: 3.0 Consensus size: 25
16406926 CTGACTTTAG
16406936 GCATACGGAGTTCATCCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
*
16406961 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCT-A
*
16406987 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16407012 TGATCAGACC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 24 0.51
26 23 0.49
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTCTA
Found at i:16406996 original size:26 final size:26
Alignment explanation
Indices: 16406936--16407011 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
16406926 CTGACTTTAG
16406936 GCATACGGAGTTCATCCCCAGTCT-A
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16406961 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16406987 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16407012 TGATCAGACC
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 23 0.49
26 24 0.51
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16409021 original size:26 final size:26
Alignment explanation
Indices: 16408975--16409027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16408965 GTAGACTTAG
*
16408975 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
**
16409001 GCATACGGAGTTCATTTCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
16409027 G
1 G
16409028 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:16410194 original size:159 final size:160
Alignment explanation
Indices: 16409855--16410371 Score: 519
Period size: 159 Copynumber: 3.3 Consensus size: 160
16409845 CTCATTTCAA
* * * * * *
16409855 GGGTTAACTTAGGCATACGGAGTTCA-TCCCTAGTCTGAG-ATCGGATCGGACTGAGGGTTGCGG
1 GGGTTGACTTAGGCATATGGAGTTCATTCCAT-GTCTAAGCACCAGATCGGACTGAGGGTTGCGG
* * * *
16409918 CAGTAGGATCGGTAGCACGCAG-GGGGGACAGGGCCAATCCCTGGGTTGCGCATTCTGCCTCTCC
65 CAGTAGGATCGATAGCACGCAGAGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * * *
16409982 GATCGGCTGAGCACCCTCATGCCCATTGCGT
130 GGTCGGCTGAGCACCCACACGCTCGTTTCGT
* * * *
16410013 GGGTT-AGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGG
1 GGGTTGA-CTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGATCGGACTGAGGGTTGCGG
* * ** * * *
16410076 CAATAGGATCGACAGCACGCAGAGGGGGATTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTC
65 CAGTAGGATCGATAGCACGCAGAGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * *
16410141 GGTCGGCTCAGCGCCCGCACGCTCGTTTCGT
130 GGTCGGCTGAGCACCCACACGCTCGTTTCGT
* * * * * * *
16410172 GGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATTGAGGGATGCAG
1 GGGTTGACTTAGGCATATGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACTGAGGGTTGCGG
* * * * * *
16410235 CAGTAGGATCGATAGCTCACA-AGAGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTC
65 CAGTAGGATCGATAGCACGCAGAG-GGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
* *
16410299 CAGTCGACTGAGCACCCACACGCTCGTTTCGT
129 CGGTCGGCTGAGCACCCACACGCTCGTTTCGT
* *
16410331 GGGTTGGCTTAGGCATATGGAGTTCAATCCATGTCTAAGCA
1 GGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
16410372 TACGGAGTTC
Statistics
Matches: 291, Mismatches: 58, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 72 0.25
159 213 0.73
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (160 bp):
GGGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAGATCGGACTGAGGGTTGCGGC
AGTAGGATCGATAGCACGCAGAGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
GTCGGCTGAGCACCCACACGCTCGTTTCGT
Found at i:16411566 original size:157 final size:157
Alignment explanation
Indices: 16411095--16411593 Score: 576
Period size: 159 Copynumber: 3.2 Consensus size: 157
16411085 CCATCTAAGA
* * * *
16411095 ATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGATTGCGGAAGCAGGATCGATAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTTC-GAAGCAGGATCGACAG
* * * * * * *
16411159 CACGCATGGGGGACCGGGCCGATCCCCAGCTTGCACATTTTGCCTCTCCGGCCGACTGAGCTCCC
64 CATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCC
* *
16411224 GCACGCCCGTTTCATGGGTTGGCTTAGGC
129 GCATGCTCGTTTCATGGGTTGGCTTAGGC
** * * * ** * *
16411253 ATA-GCGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAGGGGGACCGGCA
1 ATACG-GAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTT-TCGAAGCAGGATCGACA
* * * *
16411316 GCATGCAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGGCTCAGCGC
63 GCATGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGC
* *
16411381 CCGCATGCTTGTTTCATGGGTTGACTTAGGC
127 CCGCATGCTCGTTTCATGGGTTGGCTTAGGC
*
16411412 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTTCGATAGCAGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTTCGA-AGCAGGATCGACAG
* * * * *
16411476 CATGCAGGGGGGA-CGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGGCTCAGCGCCC
64 CATGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCC
*
16411540 GCATGCTCGTTTCGTGGGTTGGCTTAGGC
129 GCATGCTCGTTTCATGGGTTGGCTTAGGC
16411569 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
16411594 CATATAGAGT
Statistics
Matches: 282, Mismatches: 49, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
156 3 0.01
157 94 0.33
158 56 0.20
159 125 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTTCGAAGCAGGATCGACAGCA
TGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCGC
ATGCTCGTTTCATGGGTTGGCTTAGGC
Found at i:16411896 original size:156 final size:157
Alignment explanation
Indices: 16411645--16411933 Score: 379
Period size: 156 Copynumber: 1.8 Consensus size: 157
16411635 GGGTTTCGAC
* * *
16411645 AGCAGGATCTACAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCGTATTATGCCTCTTCG
1 AGCAGGATCGACAGCATGCA-AGGGGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCG
* *
16411710 GCCGACTCAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTA-TACGTACGGAGTTCATTCCA-GT
65 ACCGACACAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTAGTA--TACGGAGTTCATTCCATGT
16411773 CTAATATCGGATTGGACTGAGGGTTACAGT
128 CTAATATCGGATTGGACTGAGGGTTACAGT
* * * *
16411803 AGCAGGATCGACAGCATGC-AGGGGGACC-AGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCATGCAAGGGGGACCGAGCCA-ATCCCCGACTTGCGCATTATGCCTCTCCG
* * * * *
16411866 ACCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTC
65 ACCGACACAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTA-GTATACGGAGTTCATTCCATGTC
16411931 TAA
129 TAA
16411934 GCATACGGAG
Statistics
Matches: 113, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
155 4 0.04
156 83 0.73
157 6 0.05
158 20 0.18
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
AGCAGGATCGACAGCATGCAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTATGCCTCTCCGA
CCGACACAGCGCCCGCACGCGCCTTTCGTGGGTTGACTTAGTATACGGAGTTCATTCCATGTCTA
ATATCGGATTGGACTGAGGGTTACAGT
Found at i:16411897 original size:341 final size:342
Alignment explanation
Indices: 16411314--16411951 Score: 940
Period size: 341 Copynumber: 1.9 Consensus size: 342
16411304 GGGGGACCGG
* * * * * *
16411314 CAGCATGCAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGGCTCAGC
1 CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGACTCAGC
* *** *
16411379 GCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
66 GCCCGCACGCGCCTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
16411444 CGGACTGAGGGTTTCGATAGCAGGATCGACAGCATGCAGGGGGGACGGGCCGATCCCCGGCTTAC
131 CGGACTGAGGGTTACGATAGCAGGATCGACAGCATGCAGGGGGGACAGGCAGATCCCCGGCTTAC
* * *
16411509 GCATTCTGCCTCTCTGACCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
196 GCATTCTGCCTCTCCGACCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
16411574 GAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTATGATTAGACCGGACCAAGGGT
261 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTATGATTAGACCGGACCAAGGGT
16411639 TTCGACAGCAGGATCTA
326 TTCGACAGCAGGATCTA
** *
16411656 CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCGTATTATGCCTCTTCGGCCGACTCAGC
1 CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGACTCAGC
* * * * * *
16411721 GCCCGCACGCGCCTTTCGTGGGTTGACTTATACGTACGGAGTTCATT-CCAGTCTAATATCGGAT
66 GCCCGCACGCGCCTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
16411785 TGGACTGAGGGTTAC-AGTAGCAGGATCGACAGCATGCA-GGGGGACCAGGCAGATCCCTGGCTT
131 CGGACTGAGGGTTACGA-TAGCAGGATCGACAGCATGCAGGGGGGA-CAGGCAGATCCCCGGCTT
* * *
16411848 GCGCATTCTGCCTCTCCGACCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATA
194 ACGCATTCTGCCTCTCCGACCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
16411913 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
259 CGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
16411952 TAGTATAATA
Statistics
Matches: 261, Mismatches: 33, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
340 7 0.03
341 159 0.61
342 95 0.36
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (342 bp):
CAGCATGCAGAGGGGGACCGAGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGACTCAGC
GCCCGCACGCGCCTTTCATGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACTGAGGGTTACGATAGCAGGATCGACAGCATGCAGGGGGGACAGGCAGATCCCCGGCTTAC
GCATTCTGCCTCTCCGACCGGCACAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTATGATTAGACCGGACCAAGGGT
TTCGACAGCAGGATCTA
Done.