Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 137 of 402
Found at i:16412649 original size:26 final size:26
Alignment explanation
Indices: 16412620--16412698 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16412610 GCTGACTTAG
16412620 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16412646 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16412672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16412698 G
1 G
16412699 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16413031 original size:159 final size:156
Alignment explanation
Indices: 16412672--16413046 Score: 362
Period size: 159 Copynumber: 2.4 Consensus size: 156
16412662 CCCAGTCTAA
* * **
16412672 GCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGAGTTGCGGCAGCAGGATTGGC
1 GCATA-GGAAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCGGC
* * * * * *
16412736 AGCACGCAAGGGGGACCAGGCAGATCCCCGGCTTACGCATTCTTCCTCTCTAGCCAGTTGAGCGC
64 AGCACGCAAGGGGGACCAGGCAGATCCCCGGCTTACGCATTATGCCTCTCCAGCCAGCTCAACGC
* *
16412801 CCGTCGCCCATTTCGTGGGTTGGCTTAG
129 CCGACGCCCATTTCATGGGTTGGCTTAG
* ** * * **
16412829 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGGGGGACCGGC
1 GCATAGGAAGTTCATTCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCGGC
* * * * *
16412893 AGCACGCAGAGGGGGATCAGGTC-GATCCTCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAAC
64 AGCACGCA-AGGGGGACCAGG-CAGATCCCCGGCTTACGCATTATGCCTCTCCAGCCAGCTCAAC
*
16412957 GCCCGCACGCTCATTTCATGGGTTGAG-TTAG
127 GCCCG-ACGCCCATTTCATGGGTTG-GCTTAG
* ** * * *
16412988 GCATATGAAGTTCATTCCTAGTCTAAGATTGGATCGGATCGAGGGTTTCGACAGCAGGA
1 GCATAGGAAGTTCATTCC-AGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGA
16413047 TTGAGGTCTT
Statistics
Matches: 172, Mismatches: 37, Indels: 16
0.76 0.16 0.07
Matches are distributed among these distances:
156 5 0.03
157 52 0.30
158 49 0.28
159 64 0.37
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATAGGAAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGACCGGCAG
CACGCAAGGGGGACCAGGCAGATCCCCGGCTTACGCATTATGCCTCTCCAGCCAGCTCAACGCCC
GACGCCCATTTCATGGGTTGGCTTAG
Found at i:16413167 original size:135 final size:135
Alignment explanation
Indices: 16412925--16413182 Score: 315
Period size: 135 Copynumber: 1.9 Consensus size: 135
16412915 CGATCCTCGG
* **
16412925 CTTGCGCATTATGCCTCTCCAGTCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGAGTTAGGC
1 CTTGCGCATTATGCCTCTCCAGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACATAGGC
* * ** *
16412990 ATATGAAGTTCATTCCTAGTCTAAGATTGGATCGGATCGAGGGTT-TCGACAGCAGGATTGAGGT
66 ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTGT-GACAGCAGGATTGAGGT
16413054 CTTTGA
130 CTTTGA
* * * * * *
16413060 CTTGCGCATTCTGCCTCT-CTGACCGTCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACATAGG
1 CTTGCGCATTATGCCTCTCCAG-CCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACATAGG
** *
16413124 CATACGGTGTTCATTCCCAGTCTAAGATCAGATCGAA-CTGAGGGTTGTGGCAGCAGGAT
65 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAATC-GAGGGTTGTGACAGCAGGAT
16413183 CGATAGCACA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
134 3 0.03
135 99 0.96
136 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.29
Consensus pattern (135 bp):
CTTGCGCATTATGCCTCTCCAGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACATAGGC
ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTGTGACAGCAGGATTGAGGTC
TTTGA
Found at i:16413304 original size:26 final size:26
Alignment explanation
Indices: 16413274--16413326 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16413264 GTTGGCTTAG
16413274 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16413300 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16413326 G
1 G
16413327 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16413689 original size:26 final size:26
Alignment explanation
Indices: 16413653--16413703 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16413643 GTTCACTTAG
16413653 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16413679 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
16413704 TGACCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16415290 original size:158 final size:157
Alignment explanation
Indices: 16415097--16415464 Score: 386
Period size: 158 Copynumber: 2.3 Consensus size: 157
16415087 GAGTGCTCGC
* * * *
16415097 ACGCCCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA-ACCCCAGCCAGAT
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCA-ACAGAC
* * ** * * *
16415161 CGAGGGTTGTGGCAACGAGA-CAGGTAGGACGCAGAGGGGGATCGGG-CTGATGCCCGGCTT-AC
65 CGAGGGTTGCGGCAACAAGATC-GACAGGACACAG-GGGGGATCGGGTC-GATCCCCGACTTCAC
* *
16415223 GATTATGCCTCTCTGGTCGGCTCAGCACCCGA
127 -ATTATGCCTCTCTGGCCAGCTCAGCACCCGA
* * * ** *
16415255 ACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGAACGGAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCCAACAGAC
* * *
16415319 CGAGGGTTGCGGTAGCAAGATCGACAGGACACAGGGGGGATCGGGTCGGTCCCCGACTTGCACAT
65 CGAGGGTTGCGGCAACAAGATCGACAGGACACAGGGGGGATCGGGTCGATCCCCGACTT-CACAT
* * * *
16415384 TCTGCCTCTCTGGCCAGCTGAGCGCCCGC
129 TATGCCTCTCTGGCCAGCTCAGCACCCGA
* *
16415413 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16415465 CATGCGAAGT
Statistics
Matches: 173, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
157 23 0.13
158 141 0.82
159 9 0.05
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.23
Consensus pattern (157 bp):
ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCAACAGACC
GAGGGTTGCGGCAACAAGATCGACAGGACACAGGGGGGATCGGGTCGATCCCCGACTTCACATTA
TGCCTCTCTGGCCAGCTCAGCACCCGA
Found at i:16415631 original size:26 final size:26
Alignment explanation
Indices: 16415595--16415647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16415585 GTTGGCTTAG
16415595 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16415621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16415647 G
1 G
16415648 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16416342 original size:26 final size:26
Alignment explanation
Indices: 16416306--16416358 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16416296 GTTGACATAG
*
16416306 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACAGAGTTCATT-CCCAGTCTAA
16416332 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16416358 G
1 G
16416359 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16418023 original size:158 final size:158
Alignment explanation
Indices: 16417402--16418371 Score: 871
Period size: 158 Copynumber: 6.1 Consensus size: 158
16417392 CTAAGCAAAT
* * * * * *
16417402 GGAGTTCAATCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAGGATTGGC-GACACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG-CACG
* * * * * **
16417466 CAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCTTAC
65 CAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
* * *
16417531 ACCCGTTTCATGGGTTGGCTTAGGCATAG
130 ACTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** * * * * *
16417560 GGAGTTCATT-CCATGTCCAAGCCCCAG-TCGGACCGACGGTTGTGGCAGCGGGACCGACAGCAC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
** * * * * * * *
16417623 GCAGAAAGGGACCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTCCGATCGGCTCAGCGCTCGA
64 GCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
* *
16417688 ACACTCATTTCGTGGGTTGACTTAGGCATAC
128 ACACTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * * *
16417719 GAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAGTAGGATCGACAGCATGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
16417784 A-GGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTAAGCGCCCGCACG
66 AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACA
* ***
16417848 CTTGTTTCACAGGTTGGCTTAGGCATAC
131 CTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * **
16417876 GGAATTCATTCCCAGTTTAAGATCAGACCGGACCGAAGGTTGCGGCAGCAGGATTGGTAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * *
16417941 AGGGGGGACCAGGTCGATCCCTGGCTTGCGTATTCTGCCTTTCCAACCGGTTGAGCGCCCGCACA
66 AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACA
* * * * *
16418006 CCCATTTCGCGGATTGGCTTAGGCATAG
131 CTCGTTTCGTGGGTTGGCTTAGGCATAC
** * *
16418034 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAG-TGAGA-CTGACAGC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAG-GATC-GACAGC
* * * * * * *
16418095 ACGTAGGGGGGACCAGGTCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCAGCTCAGTGCCC
62 ACGCAGGGGGGACCGGGT-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
* * * ** *
16418160 GAACGCTTGTTTCGTGGGTTAACTTAGGCATAT
126 GCACACTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * *
16418193 GGAGTTCATTCCTAGTCTTAGATCAGACTGGACCGAGTGTTGCGGCAGCAGGATCGACAACACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * ** * * ** * *
16418258 AGGGGGGATCGGG-CTGGTCCTTGGCTTGCGCATTCTACCTTTCCGGTCGGCTGAGTGCCCTCAC
66 AGGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
*
16418322 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
130 ACTCGTTTCGTGGGTTGGCTTAGGCATAC
16418351 GGAGTTCATT-CCATGTCTAAG
1 GGAGTTCATTCCCA-GTCTAAG
16418372 CATACGGAGT
Statistics
Matches: 643, Mismatches: 151, Indels: 36
0.77 0.18 0.04
Matches are distributed among these distances:
157 136 0.21
158 261 0.41
159 239 0.37
160 7 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACA
CTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:16418237 original size:317 final size:315
Alignment explanation
Indices: 16417588--16418373 Score: 857
Period size: 317 Copynumber: 2.5 Consensus size: 315
16417578 AAGCCCCAGT
* * * * * ** *
16417588 CGGACCGACGGTTGTGGCAGCGGGACCGACAGCACGCAGAAAGGGACCGGGCCGATCCCCGGCTT
1 CGGACCGAAGGTTGCGGCAGCAGGATCGACAACACGCAG-GGGGGACC-GGCCGATCCCTGGCTT
* * * * * *
16417653 GCGTATTATGCCTCTCCGATCGGCTCAGCGCTCGAACACTCATTTCGTGGGTTGACTTAGGCATA
64 GCGTATTCTGCCTTTCCGATCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATA
* * * *
16417718 CGAAGTTCATTCCCA-GTCTAAG-ATCGGACCAGATCGAGGGTTGCGGCAGTAGGATCGACAGCA
129 CGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCA
* * * * *
16417781 TGTAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTAAGCGCCCGCA
193 CGTAGGGGGACCAGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGCGCCCGAA
**
16417846 CGCTTGTTTCACAGGTTGGCTTAGGCATACGGAATTCATTCCCAGTTTAAGATCAGAC
258 CGCTTGTTTCACAGGTTAACTTAGGCATACGGAATTCATTCCCAGTTTAAGATCAGAC
* ** * *
16417904 CGGACCGAAGGTTGCGGCAGCAGGATTGGTAGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTG
1 CGGACCGAAGGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGACC-GGCCGATCCCTGGCTTG
* * * * * * *
16417969 CGTATTCTGCCTTTCCAACCGGTTGAGCGCCCGCACACCCATTTCGCGGATTGGCTTAGGCATAG
65 CGTATTCTGCCTTTCCGATCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATAC
* * *
16418034 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGT-GAGA-CTGACAGCA
130 GGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGTAG-GATC-GACAGCA
* * * * *
16418096 CGTAGGGGGGACCAGGTCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCAGCTCAGTGCCCG
193 CGTA-GGGGGACCAGGT-CGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGCGCCCG
*** * * *
16418161 AACGCTTGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCTAGTCTT-AGATCAGAC
256 AACGCTTGTTTCACAGGTTAACTTAGGCATACGGAATTCATTCCCAGT-TTAAGATCAGAC
* * * * *
16418221 TGGACCG-AGTGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGATCGGGCTGGTCCTTGGCTT
1 CGGACCGAAG-GTTGCGGCAGCAGGATCGACAACACGCAGGGGGGA-CCGGCCGATCCCTGGCTT
* * * * * * *
16418285 GCGCATTCTACCTTTCCGGTCGGCTGAGTGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
64 GCGTATTCTGCCTTTCCGATCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATA
16418350 CGGAGTTCATTCCATGTCTAAGCA
129 CGGAGTTCATTCCATGTCTAAGCA
16418374 TACGGAGTTC
Statistics
Matches: 386, Mismatches: 75, Indels: 17
0.81 0.16 0.04
Matches are distributed among these distances:
314 5 0.01
315 120 0.31
316 47 0.12
317 211 0.55
318 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (315 bp):
CGGACCGAAGGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGACCGGCCGATCCCTGGCTTGC
GTATTCTGCCTTTCCGATCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGT
AGGGGGACCAGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCAGCTAAGCGCCCGAACGC
TTGTTTCACAGGTTAACTTAGGCATACGGAATTCATTCCCAGTTTAAGATCAGAC
Found at i:16418381 original size:26 final size:26
Alignment explanation
Indices: 16418345--16418397 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16418335 GTTGGCTTAG
16418345 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16418371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16418397 G
1 G
16418398 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16418594 original size:26 final size:26
Alignment explanation
Indices: 16418558--16418610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16418548 GTTGACTTAG
*
16418558 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16418584 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16418610 G
1 G
16418611 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16418951 original size:26 final size:26
Alignment explanation
Indices: 16418903--16418953 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16418893 TGGCTTAGGC
*
16418903 ATACGGAGTTCATTCCATGTCTAAGG
1 ATACGGAGTTCATTCCATATCTAAGG
16418929 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACGGAGTTCATT-CCATATCTAAG
16418954 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGG
Found at i:16419899 original size:158 final size:159
Alignment explanation
Indices: 16419669--16420107 Score: 496
Period size: 158 Copynumber: 2.8 Consensus size: 159
16419659 GTAGGATTGG
* * *
16419669 CAGCACGCAGGGGGGATCGGGTCAATCCCCGACTTGCACATTCTACCTCTTCGGCTGACTGAGTG
1 CAGCACGCAGGGGGGATCGGGTCAATCCTCGACTTGCACATTCTACCTCTTCGACTGACTGAGCG
* *
16419734 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGC-GAGTTCATTCCATGTCTAAGCCCCAG-
66 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-CAGAGTTCATTCCATGTCTAAGCACCAGA
* ** *
16419797 TC-GAACGAGGGTTGTGGTAGCGGGACC-A
130 CCGGAACGAGGGTTGCAGTAGCAGGACCGA
* * * * * * * * * *
16419825 GCAGCATGTAGAGGGGGATCGGGCCAATCCTCGGCTTGCGCATTGTTCCTCTTCGATTGGCTCAG
1 -CAGCACGCAG-GGGGGATCGGGTCAATCCTCGACTTGCACATTCTACCTCTTCGACTGACTGAG
* * * * * *
16419890 CGCCAGCACGCTCATTTTGTGGGATGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAG-ATCG
64 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCACCA
** *
16419953 GACCGGATTGAGGGTTGCAGTAGCAGGATCGA
128 GACCGGAACGAGGGTTGCAGTAGCAGGACCGA
* * *
16419985 CAGCACGCAGGGGGGATTGGGTCAGTCCTCGACTTGCACATTCTACCT-TTCGACCGACTGAGCG
1 CAGCACGCAGGGGGGATCGGGTCAATCCTCGACTTGCACATTCTACCTCTTCGACTGACTGAGCG
* *
16420049 CCCGCACGCTCGTTTCGTGGGTAGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
66 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
16420108 TACGGAGTTC
Statistics
Matches: 227, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
157 73 0.32
158 126 0.56
159 27 0.12
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CAGCACGCAGGGGGGATCGGGTCAATCCTCGACTTGCACATTCTACCTCTTCGACTGACTGAGCG
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGAC
CGGAACGAGGGTTGCAGTAGCAGGACCGA
Found at i:16420115 original size:26 final size:26
Alignment explanation
Indices: 16420079--16420131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16420069 GTAGGCTTAG
16420079 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16420105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16420131 G
1 G
16420132 ATCGGACCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16420947 original size:26 final size:26
Alignment explanation
Indices: 16420899--16420949 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16420889 TGACTTAGGC
* *
16420899 ATACGGAGTTCATCCGCAGTCTAAGT
1 ATACAGAGTTCATCCGCAATCTAAGT
16420925 ATACAGAGTTCATTCC-CAATCTAAG
1 ATACAGAGTTCA-TCCGCAATCTAAG
16420950 ACCGAACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCGCAATCTAAGT
Found at i:16421681 original size:171 final size:166
Alignment explanation
Indices: 16420978--16422640 Score: 830
Period size: 171 Copynumber: 9.8 Consensus size: 166
16420968 TTGCGGCATA
* * * * *
16420978 GGATCAACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGATCG
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCG
* * ** *
16421042 GCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
*
16421107 CCCCAGTCGGACTGAGGGTTGT-G--GC-AGCG---
131 CCCCAGTCGGACCGAGGGTTGTGGTAGCGAGCGTAC
* * * * * * ** *
16421136 GGACCGATAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCG
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCG
* * * * * * ** *
16421201 GCTCAGCGCCCGTACGCTCATTTCGTTGGTTGACTTAGGCATATGGAGTTCGTTCC-TAGTCTAA
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAA
** *
16421265 G-ATCGGATCGGACCGAGGGTTGT-G--GC-AGC--A-
130 GCCCCAG-TCGGACCGAGGGTTGTGGTAGCGAGCGTAC
* * * * * * * *
16421295 GGATCGACAGCACACAAGAGGGATGTG-GCA-GCAGGATCCTCGACTTGCGCATTCTACCCCTCC
1 GGATCGACAGCACGC-AGAGGG--G-GACCAGGC-CGATCCCCGACTTACGCATTATGCCTCTCC
* * * * * * * *
16421358 GATCGGCTGAGTGCCTGTACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTTATTCCCA-G
61 GACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATG
** * ** * ** * *
16421422 TCTAAGATCTAACCGGACCAAGGGTTGCAGTAGCAAAAC-TAGC
125 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGC-GAGCGTA-C
* * * * * * *
16421465 AGCAAGATCGACATCACGCAG-GGGGGCATCAGGCCGATTCCCGACTTATGCAATCTGCCTCTCT
1 -G---GATCGACAGCACGCAGAGGGGG-ACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCC
* * * *
16421529 GGCCGACTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGT
61 GACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
16421594 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACAGATAGC
126 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAG-C-G-TA-C
* *
16421639 GGGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGATC
1 -GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTC-TC---C
* * *
16421704 GGCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
61 -G-----ACC---GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTC
* * * * * * * *
16421769 ATCCGCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGACCGAACTGGATCGACGGTTGCG-G
117 ATTC-CA---T--GTCT--A-AG--C---CCCAGTC--GGACCG-A--GGGTTG-TGGTAGCGAG
*
16421833 CATA-
162 CGTAC
* * * *
16421837 GGATCAACAGCACGC--AGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGACC-
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCG
* * ** *
16421899 GCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
*
16421964 CCCCAGTCGGACTGAGGGTTGT-G--GC-AGCG---
131 CCCCAGTCGGACCGAGGGTTGTGGTAGCGAGCGTAC
* * * * * * ** *
16421993 GGACCGATAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCG
1 GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCG
* * * * * * ** *
16422058 GCTCAGCGCCCGTACGCTCATTTCGTTGGTTGACTTAGGCATATGGAGTTCGTTCC-TAGTCTAA
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAA
** *
16422122 G-ATCGGATCGGACCGAGGGTTGT-G--GC-AGC--A-
130 GCCCCAG-TCGGACCGAGGGTTGTGGTAGCGAGCGTAC
*** * * * * *
16422152 GGATCGACAGCACGCA-AGGGGGATGTGGCAGCAGGATCCTCGACTTGCGCATTCTACCCCTCCG
1 GGATCGACAGCACGCAGAGGGGGACCAGGC--C--GATCCCCGACTTACGCATTATGCCTCTCCG
* * * * * *
16422216 ATCGGCTGAGTGCCTGCACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTCATTCCCA-GT
62 ACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGT
** * ** * ** * *
16422280 CTAAGATCTAACCGGACCAAGGGTTGCAGTAGCAAAAC-TAGC
126 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGC-GAGCGTA-C
* * * * * *
16422322 AGCAAGATCGACATCACGCAG-GGGGGCATCAGGCCGATTCCCGACTTACGCAATCTGCCTCTCT
1 -G---GATCGACAGCACGCAGAGGGGG-ACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCC
* * * *
16422386 GGCCGACTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGT
61 GACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
16422451 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAGACAGATAGC
126 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGAG-C-G-TA-C
* *
16422496 GGGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGATC
1 -GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTC-TC---C
* * *
16422561 GGCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
61 -G-----ACC---GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTC
*
16422626 ATCCCCA-GTCTAAGC
117 AT-TCCATGTCTAAGC
16422641 ATACGGAGTT
Statistics
Matches: 1153, Mismatches: 238, Indels: 202
0.72 0.15 0.13
Matches are distributed among these distances:
156 11 0.01
158 76 0.07
159 213 0.18
160 8 0.01
161 2 0.00
162 186 0.16
163 7 0.01
164 1 0.00
165 8 0.01
167 10 0.01
168 2 0.00
169 1 0.00
170 10 0.01
171 284 0.25
172 21 0.02
173 4 0.00
174 41 0.04
175 8 0.01
176 2 0.00
177 1 0.00
180 2 0.00
181 54 0.05
184 107 0.09
185 7 0.01
188 1 0.00
190 4 0.00
191 1 0.00
192 1 0.00
193 2 0.00
194 2 0.00
195 37 0.03
197 13 0.01
198 6 0.01
200 7 0.01
201 1 0.00
202 1 0.00
203 5 0.00
204 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (166 bp):
GGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCG
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
CCCCAGTCGGACCGAGGGTTGTGGTAGCGAGCGTAC
Found at i:16421806 original size:26 final size:26
Alignment explanation
Indices: 16421758--16421808 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16421748 TGACTTAGGC
* *
16421758 ATACGGAGTTCATCCGCAGTCTAAGT
1 ATACAGAGTTCATCCGCAATCTAAGT
16421784 ATACAGAGTTCATTCC-CAATCTAAG
1 ATACAGAGTTCA-TCCGCAATCTAAG
16421809 ACCGAACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCGCAATCTAAGT
Found at i:16422342 original size:857 final size:859
Alignment explanation
Indices: 16420781--16423139 Score: 3896
Period size: 857 Copynumber: 2.8 Consensus size: 859
16420771 ACCAGGAGCA
* * * * * *
16420781 GGATCGACAGCACGCA-AGGGGGGATC-GAGCCGATCCCTGACTTGCGCATTCTGCCTCTTCGAT
1 GGATCGGCAGCACGCAGA-GGGGGACCAG-GCTGATCCCCGACTTACGCATTATGCCTCTTCGAT
* * * * * *
16420844 CGGCCTTTTCGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
64 CGGCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
16420909 CATCCGCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGACCGAACTGGATCGACGGTTGCGG
129 CATCCGCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGACCGAACTGGATCGACGGTTGCGG
16420974 CATAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGA
194 CATAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGA
16421039 TCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGT
259 TCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGT
16421104 AAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGGGATCGGGCCGA
324 AAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGGGATCGGGCCGA
16421169 TCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCGTTGGTTGA
389 TCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCGTTGGTTGA
16421234 CTTAGGCATATGGAGTTCGTTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
454 CTTAGGCATATGGAGTTCGTTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
* *
16421299 CGACAGCACACAAGAGGGATGTGGCAGCAGGATCCTCGACTTGCGCATTCTACCCCTCCGATCGG
519 CGACAGCACGCAAGGGGGATGTGGCAGCAGGATCCTCGACTTGCGCATTCTACCCCTCCGATCGG
*
16421364 CTGAGTGCCTGTACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTTATTCCCAGTCTAAGA
584 CTGAGTGCCTGCACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTTATTCCCAGTCTAAGA
16421429 TCTAACCGGACCAAGGGTTGCAGTAGCAAAACTAGCAGCAAGATCGACATCACGCAGGGGGGCAT
649 TCTAACCGGACCAAGGGTTGCAGTAGCAAAACTAGCAGCAAGATCGACATCACGCAGGGGGGCAT
*
16421494 CAGGCCGATTCCCGACTTATGCAATCTGCCTCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCA
714 CAGGCCGATTCCCGACTTACGCAATCTGCCTCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCA
16421559 TGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGT
779 TGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGT
16421624 AGCGAGACAGATAGCG
844 AGCGAGACAGATAGCG
16421640 GGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGATCG
1 GGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGATCG
16421705 GCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
16421770 TCCGCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGACCGAACTGGATCGACGGTTGCGGCA
131 TCCGCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGACCGAACTGGATCGACGGTTGCGGCA
16421835 TAGGATCAACAGCACGCA-GGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGA-C
196 TAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGATC
*
16421898 CGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAA
261 GGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAA
16421963 GCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGGGATCGGGCCGATC
326 GCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGGGATCGGGCCGATC
16422028 CCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCGTTGGTTGACT
391 CCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCGTTGGTTGACT
16422093 TAGGCATATGGAGTTCGTTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCG
456 TAGGCATATGGAGTTCGTTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCG
16422158 ACAGCACGCAAGGGGGATGTGGCAGCAGGATCCTCGACTTGCGCATTCTACCCCTCCGATCGGCT
521 ACAGCACGCAAGGGGGATGTGGCAGCAGGATCCTCGACTTGCGCATTCTACCCCTCCGATCGGCT
*
16422223 GAGTGCCTGCACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTCATTCCCAGTCTAAGATC
586 GAGTGCCTGCACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTTATTCCCAGTCTAAGATC
16422288 TAACCGGACCAAGGGTTGCAGTAGCAAAACTAGCAGCAAGATCGACATCACGCAGGGGGGCATCA
651 TAACCGGACCAAGGGTTGCAGTAGCAAAACTAGCAGCAAGATCGACATCACGCAGGGGGGCATCA
16422353 GGCCGATTCCCGACTTACGCAATCTGCCTCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATG
716 GGCCGATTCCCGACTTACGCAATCTGCCTCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATG
16422418 GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAG
781 GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAG
16422483 CGAGACAGATAGCG
846 CGAGACAGATAGCG
16422497 GGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGATCG
1 GGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGATCG
16422562 GCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * ** * * * * * * *
16422627 TCCCCAGTCTAAGCATACGGAGTTCATTTACAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCA
131 TCCGCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGACCGAACTGGATCGACGGTTGCGGCA
* * * * *
16422692 GTAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGAT
196 -TAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGAT
*
16422757 CGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
260 CGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTA
* * *
16422822 AGCCCCAGTCGGA-TCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGATCGGGCCGA
325 AGCCCCAGTCGGACT-GAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGGGATCGGGCCGA
* * * * * * ** * * * * * *
16422886 TCCTCGACCTGCGCATTATGCATCTTCGGCCGACTCAACGCCCGAATGCTCGTTTCGTGGGTTGA
389 TCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCGTTGGTTGA
* * * * * * * * *
16422951 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGTTTGCGGTAGCAGGAT
454 CTTAGGCATATGGAGTTCGTTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGAT
* * ** * * * * *
16423016 CGATAGCACGCAAAGGGGAT-T--C-GTTGG-TCCCCGGCTTGCGCATTCTGCCTCTCTGA-CTG
519 CGACAGCACGCAAGGGGGATGTGGCAGCAGGATCCTCGACTTGCGCATTCTACCCCTCCGATC-G
* * * * *
16423075 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTATT-CCATGTCTAA
583 GCTGAGTGCCTGCACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTTATTCCCA-GTCTAA
16423139 G
647 G
16423140 CATACGGAGT
Statistics
Matches: 1414, Mismatches: 78, Indels: 20
0.94 0.05 0.01
Matches are distributed among these distances:
854 4 0.00
855 80 0.06
856 3 0.00
857 778 0.55
858 60 0.04
859 240 0.17
860 249 0.18
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (859 bp):
GGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATGCCTCTTCGATCG
GCCTCTCCCATTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCGCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGACCGAACTGGATCGACGGTTGCGGCA
TAGGATCAACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGATC
GGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAA
GCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGTAGAGGGGGATCGGGCCGATC
CCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTACGCTCATTTCGTTGGTTGACT
TAGGCATATGGAGTTCGTTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCACGCAAGGGGGATGTGGCAGCAGGATCCTCGACTTGCGCATTCTACCCCTCCGATCGGCT
GAGTGCCTGCACACTCGTTTCGTGGGTTGGCTTCGGCATACAGAGTTTATTCCCAGTCTAAGATC
TAACCGGACCAAGGGTTGCAGTAGCAAAACTAGCAGCAAGATCGACATCACGCAGGGGGGCATCA
GGCCGATTCCCGACTTACGCAATCTGCCTCTCTGGCCGACTGAGCTCCCGCACGCTCGTTTCATG
GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAG
CGAGACAGATAGCG
Found at i:16422660 original size:26 final size:26
Alignment explanation
Indices: 16422613--16422665 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16422603 GTTGACTTAG
*
16422613 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
**
16422639 GCATACGGAGTTCATTTACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
16422665 G
1 G
16422666 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:16423142 original size:26 final size:26
Alignment explanation
Indices: 16423113--16423165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16423103 GTTGGCTTAG
*
16423113 GCATACAGAGTTTATTC-CATGTCTAA
1 GCATACAGAGTTCATTCGCA-GTCTAA
*
16423139 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
16423165 G
1 G
16423166 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:16424182 original size:26 final size:26
Alignment explanation
Indices: 16424141--16424190 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16424131 AAACTCTCTA
* *
16424141 AAAAAAATTTTAAAAAATCCTGAACC
1 AAAAAAAGTTTAAAAAATCATGAACC
*
16424167 AAAAAAAGTTTCAAAAATCATGAA
1 AAAAAAAGTTTAAAAAATCATGAA
16424191 AAATATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.60, C:0.12, G:0.06, T:0.22
Consensus pattern (26 bp):
AAAAAAAGTTTAAAAAATCATGAACC
Found at i:16424736 original size:159 final size:158
Alignment explanation
Indices: 16424466--16424793 Score: 356
Period size: 159 Copynumber: 2.1 Consensus size: 158
16424456 GGACCGGATG
* * * * * * *
16424466 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGTATT
1 GAGGGTTGCGGCAACAGGACCGACAGCACACAGGGGGGACCGGGCCAATCCCCGACTTACGCATT
* * * * * * * *
16424531 CTGCCTCTCCGGCTGGCTAAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTCCGGCTGACTAAGCGCCCGCACACCCATTTCATCGGTTGACTTAGGCATACGAAGTT
* *
16424596 CATGCC-ATGTCTAAGCCCCA-ACCAGACC
131 CATACCTA-GTCTAAG-ACCAGACCAGACC
* * * *
16424624 GAGGGTTGTGGCAACGGGACCGACAGCACACAGAGGGGGACCGGGCCAATCCCTGACTTGCGCAT
1 GAGGGTTGCGGCAACAGGACCGACAGCACACAG-GGGGGACCGGGCCAATCCCCGACTTACGCAT
* * * *
16424689 TATGCCTCTCCGG-TCGACTCAGCGCCCGCCCACTCATTTCGTCGGTTGACTTAGGCATACGAAG
65 TATGCCTCTCCGGCT-GACTAAGCGCCCGCACACCCATTTCATCGGTTGACTTAGGCATACGAAG
* *
16424753 TTGATACCTAGTCTAAGATCAGACCAGACC
129 TTCATACCTAGTCTAAGACCAGACCAGACC
16424783 GAGGGTTGCGG
1 GAGGGTTGCGG
16424794 TAGCAGGATC
Statistics
Matches: 138, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
158 31 0.22
159 106 0.77
160 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.20
Consensus pattern (158 bp):
GAGGGTTGCGGCAACAGGACCGACAGCACACAGGGGGGACCGGGCCAATCCCCGACTTACGCATT
ATGCCTCTCCGGCTGACTAAGCGCCCGCACACCCATTTCATCGGTTGACTTAGGCATACGAAGTT
CATACCTAGTCTAAGACCAGACCAGACC
Found at i:16425044 original size:317 final size:316
Alignment explanation
Indices: 16424466--16425589 Score: 1063
Period size: 317 Copynumber: 3.5 Consensus size: 316
16424456 GGACCGGATG
* * * *
16424466 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGTATT
1 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATT
* * * * *
16424531 CTGCCTCTCCGGCTGGCTAAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
16424596 CATGCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACGGGACCGACAGCACACAGAGGG
131 CATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGG
* * * * * ** *
16424661 GGACCGGGCCAATCCCTGACTTGCGCATTATGCCTCTCCGGTC-GACTCAGCGCCCGCCCACTCA
196 GGACCGGGCCGATCCCCGACTT-CTCATTATGCCTCTCCGG-CAGGCTCAGTGCCCGAACGCTCA
* * * *
16424725 TTTCGTCGGTTGACTTAGGCATACGAAGTTGATACCTAGTCTAAGATCAGACCAGACC
259 TTTCATGGGTTGACTTAGGCATACGGAGTTAATACCTAGTCTAAGATCAGACCAGACC
* * * * **
16424783 GAGGGTTGCGGTAGCAGGATCGATAGCATGCAGGGAGGATCGGGCCGATTCCCGGCTTGCACATT
1 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATT
* * *** * ** * * *
16424848 CTGCCTTTCTGATTAGTTGAGCGCTTGCACTCCTGTTTCATGGGTTGGCTTAGGCATACAGAGTT
66 CTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * *
16424913 CATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCGAGATTGGCAGCACGCAGAAGG
131 CATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGG
* * * **
16424978 GGA-CGGGATCGATCCCCGACTTACTCATTCTGCCTCTCCGGCAGGCTGAGTGCCCGTTCGCTCA
196 GGACCGGG-CCGATCCCCGACTT-CTCATTATGCCTCTCCGGCAGGCTCAGTGCCCGAACGCTCA
* * *
16425042 TTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAG
259 TTTCATGGGTTGACTTAGGCATACGGAGTTAATACCTAGTCTAAG-AT-C--AG---A---CCAG
*
16425107 -TC
314 ACC
* * * * * * * * *
16425109 TAAGATTGGACTGGATCGAAGGTTACGGCAGTACAATCGGTAGTGCGTAGGGGGGACTGGGTCGA
1 GAGGGTT-G-C-GG-T---A-G-CA-GG-A-T-CGA-CAGCA-TGC--AGGGGGGACCGGGCCGA
* * *
16425174 TCCTCGGCTTGTGCATTCTGCCTCTCC-AGCCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTG
49 TCCCCGGCTTGTGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTG
* *
16425238 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA-TCGAGGGTTGTGGCAGCGGG
113 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACT-GAGGGTTGTGGCAGCGGG
* * * * *
16425302 ACTGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGTGAATTATGCCTCTCCGACCA-G
177 ACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTCT-CATTATGCCTCTCCG-GCAGG
* *
16425366 CTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATGCGGAGTTAATTCCTAGTCTAAGA
240 CTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTAATACCTAGTCTAAGA
* *
16425431 TCAGATCGGACC
305 TCAGACCAGACC
* * *
16425443 GAGGGTTGCGGTAGCAGGATCGACAGCATGTAGGGGGGGACCAGGCCGATCCCCGGCTTGTGGAT
1 GAGGGTTGCGGTAGCAGGATCGACAGCATGCA-GGGGGGACCGGGCCGATCCCCGGCTTGTGCAT
* * * * * *
16425508 TCTACCTCTCCGATCGGTTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGT
16425573 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
16425590 ATATGGAGTT
Statistics
Matches: 641, Mismatches: 129, Indels: 73
0.76 0.15 0.09
Matches are distributed among these distances:
316 5 0.01
317 244 0.38
318 100 0.16
319 4 0.01
320 3 0.00
321 4 0.01
322 1 0.00
323 1 0.00
324 3 0.00
325 1 0.00
326 6 0.01
327 6 0.01
328 1 0.00
329 2 0.00
330 2 0.00
331 2 0.00
332 1 0.00
333 4 0.01
334 6 0.01
335 1 0.00
336 3 0.00
337 1 0.00
338 1 0.00
339 4 0.01
340 2 0.00
341 4 0.01
342 5 0.01
343 218 0.34
344 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (316 bp):
GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATT
CTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGG
GGACCGGGCCGATCCCCGACTTCTCATTATGCCTCTCCGGCAGGCTCAGTGCCCGAACGCTCATT
TCATGGGTTGACTTAGGCATACGGAGTTAATACCTAGTCTAAGATCAGACCAGACC
Found at i:16425090 original size:26 final size:26
Alignment explanation
Indices: 16425060--16425112 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16425050 GTTGACTTAG
*
16425060 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16425086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16425112 G
1 G
16425113 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16425387 original size:159 final size:158
Alignment explanation
Indices: 16425154--16425589 Score: 488
Period size: 159 Copynumber: 2.7 Consensus size: 158
16425144 ATCGGTAGTG
* * * * *
16425154 CGTAGGGGGGACTGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCC-AGCCGGCTGAGCGCCCG
1 CGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGAATTCTGCCTCTCCGA-CCGGCTGAGTGCCCG
* * *
16425218 CACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGA
65 CACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGACCGGA
* * * *
16425282 TCGAGGGTTGTGGCAGCGGGA-CTGGCAGCA
129 CCGAGGGTTGCGGCAGCAGGATC-GACAGCA
* * *
16425312 CGTAGAGGGGGACCGGGCCGATCCCCGGCTTGTGAATTATGCCTCTCCGACCAGCTCAGTGCCCG
1 CGTAG-GGGGGACCGGGCCGATCCCCGGCTTGTGAATTCTGCCTCTCCGACCGGCTGAGTGCCCG
* * * ** *
16425377 AACGCTCATTTCATGGGTTGACTTAGGCAT-GCGGAGTTAATTCC-TAGTCTAAGATCAGATCGG
65 CACGCTCATTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCAT-GTCTAAGCCCAGACCGG
*
16425440 ACCGAGGGTTGCGGTAGCAGGATCGACAGCA
128 ACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * * * *
16425471 TGTAGGGGGGGACCAGGCCGATCCCCGGCTTGTGGATTCTACCTCTCCGATCGGTTGAGCT-CCC
1 CGTA-GGGGGGACCGGGCCGATCCCCGGCTTGTGAATTCTGCCTCTCCGACCGGCTGAG-TGCCC
* *
16425535 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 GCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16425590 ATATGGAGTT
Statistics
Matches: 231, Mismatches: 37, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
158 9 0.04
159 217 0.94
160 5 0.02
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
CGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGAATTCTGCCTCTCCGACCGGCTGAGTGCCCGC
ACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGACCGGACC
GAGGGTTGCGGCAGCAGGATCGACAGCA
Found at i:16425592 original size:26 final size:26
Alignment explanation
Indices: 16425562--16425614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16425552 GTTGGCTTAG
16425562 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
16425588 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16425614 G
1 G
16425615 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16427703 original size:352 final size:339
Alignment explanation
Indices: 16427309--16427934 Score: 842
Period size: 339 Copynumber: 1.8 Consensus size: 339
16427299 GGCTAAGCAC
* * *
16427309 CCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGCCTAAGCATACGGA
1 CCGCATGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATCACCA-GCCTAAGCATACGGA
*
16427373 GTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGTAGGACCAACAGCAGGGTCG
65 GTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGG-T----TA-T--G----ACAGCAGGATCG
* * * * *
16427438 GCAGCACGTAGGGAGGGACTGGGCCAATCCCCAGCTTGCGCATTTTACCTCTCTG-GCCGTTTGA
118 ACAGCACGCAGGG-GGGACTGGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGAGCAG-TTGA
* * *
16427502 GCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCA
181 GCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
16427567 GCCGAACCAAAGGTTATGGCAGCAGGACCAAAAGTGGGATCGACAGCACACAGAGGGGGACCGGG
246 GCCGAACCAAAGGTTATGGCAGCAGGACCAAAAGTGGGATCGACAGCACACAGAGGGGGACCGGG
16427632 CTAATCCCCGACTTGCACATTATGCCTCT
311 CTAATCCCCGACTTGCACATTATGCCTCT
* *
16427661 CCGCATGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATCACCAGTCTAAGCATATGGAG
1 CCGCATGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATCACCAGCCTAAGCATACGGAG
* * ** *
16427726 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTATGACAGCAGGATCGACAGCATGCAGGG
66 TTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTATGACAGCAGGATCGACAGCACGCAGGG
* * *
16427791 GGGACTGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCAGTTGAGCGCCTGCACGCCCG
131 GGGACTGGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGAGCAGTTGAGCGCCCGCACGCCCG
* * * * *
16427856 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
196 TTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAAGGTT
* *
16427921 GTGGCAGCGGGACC
261 ATGGCAGCAGGACC
16427935 GGTAACACGT
Statistics
Matches: 243, Mismatches: 29, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
339 125 0.51
340 23 0.09
344 1 0.00
346 1 0.00
347 2 0.01
351 1 0.00
352 87 0.36
353 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (339 bp):
CCGCATGCTCGTTTCATGGGATGACTTAGGCATACGGAGTTCATCACCAGCCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTATGACAGCAGGATCGACAGCACGCAGGG
GGGACTGGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGAGCAGTTGAGCGCCCGCACGCCCG
TTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAAGGTT
ATGGCAGCAGGACCAAAAGTGGGATCGACAGCACACAGAGGGGGACCGGGCTAATCCCCGACTTG
CACATTATGCCTCT
Found at i:16427720 original size:26 final size:26
Alignment explanation
Indices: 16427690--16427742 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16427680 GATGACTTAG
16427690 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
16427716 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16427742 G
1 G
16427743 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16428234 original size:26 final size:26
Alignment explanation
Indices: 16428194--16428244 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16428184 TGGCTTAGGC
* *
16428194 ATACGGATTTTATT-CCATGTCTAAGT
1 ATACGGAGTTCATTCCCA-GTCTAAGT
16428220 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16428245 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:16428419 original size:26 final size:26
Alignment explanation
Indices: 16428389--16428441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16428379 GTTGACTTAG
*
16428389 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16428415 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16428441 G
1 G
16428442 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16428518 original size:59 final size:59
Alignment explanation
Indices: 16428407--16428520 Score: 176
Period size: 59 Copynumber: 1.9 Consensus size: 59
16428397 AGTTCATCCC
* *
16428407 CAGTCTAAGCATACGGTGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGCGA
1 CAGTCTAAGCATACGGTGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGCGA
* *
16428466 CAGTCTAAGCATATGGTGTTCATTCCCAATCTAAGATCAAACTAGA-TCGAGGGTT
1 CAGTCTAAGCATACGGTGTTCATTCCCAATCTAAGATCAAACCAGACT-GAGGGTT
16428521 ACGGCAGCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
58 1 0.02
59 49 0.98
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (59 bp):
CAGTCTAAGCATACGGTGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGCGA
Found at i:16428669 original size:26 final size:26
Alignment explanation
Indices: 16428632--16428681 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16428622 GTTGACTTAT
*
16428632 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16428658 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
16428682 CAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16429158 original size:26 final size:26
Alignment explanation
Indices: 16429129--16429181 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16429119 GTTGGCTCAG
16429129 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16429155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16429181 G
1 G
16429182 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16429540 original size:171 final size:167
Alignment explanation
Indices: 16429155--16429679 Score: 392
Period size: 171 Copynumber: 3.2 Consensus size: 167
16429145 CCATGTCTAA
* **
16429155 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGATCAAAC-GAGGGTTGTGGCAGCAGGACCAGCA
* ** * *
16429220 CAGGATCGATAGCACACAGGGGGGACCGGGCCAATCCGTGGCTTGTGCATTCTGCCTCTCCGATC
64 CAGGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGATC
* * * * * *
16429285 GGTTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
129 GGCTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAG
* ** * *
16429324 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCAAACCGAGGGTTGTGGCAGCAGGACCGGT
1 GCATACGGAGTTCATCCCA-GTCTAAG-ATCAGATCAAA-CGAGGGTTGTGGCAGCAGGACCAGC
* * ** * * *
16429388 AGCGGGATCGGCAGCATGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGTATTATGCCTCTTCG
63 A-CAGGATCGACAGCACACAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCG
* * * * *
16429453 -GCTGGCTCAATGCCCGTACGTTCATTTCGTGGGTTGACTTAT
126 ATC-GGCTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAG
* *
16429495 GCATACGAAGTTCACTCCCAGTCTAAGATCGGATCAAATCGAGGG-T-T---A-C--GA-CAG--
1 GCATACGGAGTTCA-TCCCAGTCTAAGATCAGATCAAA-CGAGGGTTGTGGCAGCAGGACCAGCA
* * * * * * ** * * * * *
16429549 CAGGATAGACAGGACATAGGGGGTATCAGGCCGGTCCCTGACTTGCGCATTCTGCCTCTTCGACC
64 CAGGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGATC
* ** * *
16429614 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 GGCTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAG
*
16429653 GCATACGGAGTTCATTCCACGTCTAAG
1 GCATACGGAGTTCATCCCA-GTCTAAG
16429680 CATACGGAGT
Statistics
Matches: 281, Mismatches: 65, Indels: 31
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.01
158 85 0.30
159 13 0.05
162 2 0.01
163 2 0.01
165 1 0.00
166 1 0.00
168 4 0.01
169 47 0.17
170 22 0.08
171 96 0.34
172 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (167 bp):
GCATACGGAGTTCATCCCAGTCTAAGATCAGATCAAACGAGGGTTGTGGCAGCAGGACCAGCACA
GGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGATCGG
CTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:16429683 original size:26 final size:26
Alignment explanation
Indices: 16429653--16429705 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16429643 GTTGGCTTAG
16429653 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16429679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16429705 G
1 G
16429706 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16429952 original size:522 final size:516
Alignment explanation
Indices: 16428483--16429954 Score: 1583
Period size: 522 Copynumber: 2.9 Consensus size: 516
16428473 AGCATATGGT
* * * * * * * * * *
16428483 GTTCATTCCCAATCTAAGATCAAACTAGATCGAGGGTTACGGCAGCAGGATCGACAGCACG-CAG
1 GTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATCAACAGGACGATAG
* * * * *
16428547 GGGGGACCGAGAAG-ATCCCTGACTTGCGCATTATGCCTCTTCGGTCGGCTCAACGCCCGGACGC
66 GGGGGATC-AG--GCCTCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTGAACGCCCGCACGC
* * * *
16428611 TCGTTTCGTGAGTTGACTTATGCATACGGAGTTCA-TCCCCAGTCTAAGCATACGAAGTTCATTC
128 TCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCATACGGAGTTCATTC
* * *
16428675 CCAGTCTCAGATCGAACCAGACCGAGGGTTGCGGT---A-G--CAG--GATCGACAGCACGCAGG
192 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGATCGACAGCACGCAGG
* * * * * * * *
16428732 GGGATCGGGCCGATCCCTGACCTGCGCATTCTGCCTCTCCGATCAGCTGAGCACCGGCACGCCCG
257 GGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCATGCTCG
* * * *
16428797 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGATGGTT
322 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT-AAACCGAAGGTT
** ***
16428862 GTGGCAGC--GA--GA-T---A--GGTAGCATGCAGAGGAAGATCGGGCTGATCTTTGGCTTACG
386 GTGGCAGCAGGACCGAGTGGGATCGGTAGCATGCAGAGGGGGATCGGGCTGATCCCCGGCTTACG
* * * *
16428917 CAATATGCCTTTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGG
451 CAATATGCCTCTTCGGTCGGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGA
16428982 A
516 A
* * * * * * *
16428983 GTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCAACAGTACGCTGG
1 GTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATCAACAGGACGATAG
* * * * * * *
16429048 GGGGGATCGGGCC-CCC-GGCTTGTGCATTATGCCTCTCCGGCCGGTTGAACGTCCGCACGCTAG
66 GGGGGATCAGGCCTCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTGAACGCCCGCACGCTCG
* * *
16429111 TTTCGTGTGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
131 TTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
16429176 TCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCAGCACAGGATCGATAGCACACAGGG
196 TCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGACCAG--CA-GATCGACAGCACGCA-GG
* * * * *
16429241 GGGACCGGGCCAATCCGTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCATGCTCG
257 GGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCATGCTCG
*
16429306 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCGAGGGTT
322 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT-AAACCGAAGGTT
* * ** *
16429371 GTGGCAGCAGGACCGGTAGCGGGATCGGCAGCATGCAGAGGGGGATCGGGCCAATCCCCGGCTTG
386 GTGGCAGCAGGACC-G-AGTGGGATCGGTAGCATGCAGAGGGGGATCGGGCTGATCCCCGGCTTA
* * ** * *
16429436 CGTATTATGCCTCTTCGG-CTGGCTCAATGCCCGTACGTTCATTTCGTGGGTTGACTTATGCATA
449 CGCAATATGCCTCTTCGGTC-GGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTATGCATA
16429500 CGAA
513 CGAA
* * *
16429504 GTTCACTCCCAGTCTAAGATCGGATCAAATCGAGGGTTACGACAGCAGGAT-AGACAGGAC-ATA
1 GTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATCA-ACAGGACGATA
* * * *
16429567 GGGGGTATCAGGCCGGTCCCTGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGC
65 GGGGGGATCAGGCC--TCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTGAACGCCCGCACGC
* *
16429632 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCC
128 TCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCC
* * * *
16429697 CAGTCTAAGATTGGATCGGACCGAGGTTTACGGTAGCAGGACCAGCAGCATCGACAGCACGCAGA
193 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGACCAGCAG-ATCGACAGCACGCAG-
* * * * * *
16429762 GGGGATCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTCCAACCGGTTGAGCGCCCGCATGCTC
256 GGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCATGCTC
* * * *
16429827 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCGCAGCTGAACCGAAAGT
321 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-TAAACCGAAGGT
* * * *
16429892 TGTGGCAGCAGGACCGACAGTGGGATCGGTAGCACGTAGAGGGGGACCGAGCTGATCCCCGGC
385 TGTGGCAGCAGGACCG--AGTGGGATCGGTAGCATGCAGAGGGGGATCGGGCTGATCCCCGGC
16429955 CCGTCCATTA
Statistics
Matches: 799, Mismatches: 136, Indels: 52
0.81 0.14 0.05
Matches are distributed among these distances:
497 116 0.15
498 7 0.01
500 54 0.07
501 9 0.01
503 3 0.00
508 13 0.02
509 123 0.15
511 2 0.00
514 1 0.00
515 1 0.00
519 1 0.00
520 15 0.02
521 139 0.17
522 178 0.22
523 4 0.01
524 133 0.17
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (516 bp):
GTTCACTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGACAGCAGGATCAACAGGACGATAG
GGGGGATCAGGCCTCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTGAACGCCCGCACGCTCG
TTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGATCGACAGCACGCAGGGGGA
TCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCATGCTCGTTTC
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTAAACCGAAGGTTGTGGC
AGCAGGACCGAGTGGGATCGGTAGCATGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCAATA
TGCCTCTTCGGTCGGCTCAACACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGAA
Found at i:16430046 original size:26 final size:26
Alignment explanation
Indices: 16430016--16430068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16430006 GTTGACTTTG
16430016 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
16430042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16430068 G
1 G
16430069 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16430566 original size:26 final size:26
Alignment explanation
Indices: 16430517--16430567 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16430507 GTTGGCTTAG
* **
16430517 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16430543 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
16430568 TGATTTTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16431487 original size:183 final size:181
Alignment explanation
Indices: 16431219--16431854 Score: 520
Period size: 184 Copynumber: 3.3 Consensus size: 181
16431209 TCGGCTGAGT
* ** * * * *
16431219 GCCCGCACGCTCGTTTCATGGGTTGACTTACACAAACGGAGTTCATACCCTGTCTAAGCATACAG
1 GCCCGCACGCTCGTTTCGTGGGTTG-CTTA-GGATA-GGAGTTCATTCCATGTCTAAGCATACGG
** * *
16431284 AGTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTGCGACAATAGGATCGACAGCACCCAG
63 AGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGACAATAGGATCGACAGCACGCAG
*
16431349 GGGGGATCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAAC
128 GGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAAC
*
16431403 GCTCGCACGCTCGTTTCGTGGGTTAGCTTAGGATATGGAGTTCATTCCATGTCTAAGCATACGGA
1 GCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGATA-GGAGTTCATTCCATGTCTAAGCATACGGA
* *
16431468 GTTCATTCCCAATCTAAGATCAAACTGGATCGAGGGTTACGATAGCAGGACCAGTAGCAGGATCG
64 GTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGG-T----T-GC--GA-CA--A-TAGGATCG
* * * *
16431533 ACAGAACGCAGAGGGGGA-CTTGGCTGATCCTCGACTTGGGCATTATGCCTCTCCGACTGGCCTC
117 ACAGCACGCAG-GGGGGATC-GGGCTGATCC-C--C---GGC-TTACGCAT-T----CT-GCCTC
**
16431597 TCCGACCGACTGAGT
167 TCCGACCGACTGAAC
* * * * * *
16431612 GCCCGCATGCTCGTTTCATGGGTTGACTTAAGCATACAGAGTTCATCCCCA-GTCTAAGCATATG
1 GCCCGCACGCTCGTTTCGTGGGTTG-CTT-AGGATA-GGAGTTCAT-TCCATGTCTAAGCATACG
* * * * *
16431676 GAGTTCATTCCCAGTCTAAGATCAAACTGAACCAAGGGTTGCGACAGTAGGATCGGCAGCACGCA
62 GAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGACAATAGGATCGACAGCACGCA
* * * * * * * * *
16431741 GGGGGGGTCGAGCCGATCCCTGACTTACGCATTTTACCTCTTCGGCCGACTGAAC
127 GGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAAC
* *
16431796 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTTATTCCATGTCTAAGC
1 GCCCGCACGCTCGTTTCGTGGGTT-GCTTAGG-ATAG-GAGTTCATTCCATGTCTAAGC
16431855 CCCAGCCAGA
Statistics
Matches: 357, Mismatches: 59, Indels: 72
0.73 0.12 0.15
Matches are distributed among these distances:
183 65 0.18
184 84 0.24
185 3 0.01
188 1 0.00
189 3 0.01
190 6 0.02
191 4 0.01
192 2 0.01
194 1 0.00
195 17 0.05
196 15 0.04
197 13 0.04
198 17 0.05
199 1 0.00
201 2 0.01
202 5 0.01
203 6 0.02
204 3 0.01
205 1 0.00
208 3 0.01
209 43 0.12
210 59 0.17
211 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (181 bp):
GCCCGCACGCTCGTTTCGTGGGTTGCTTAGGATAGGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGACAATAGGATCGACAGCACGCAGGGG
GGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAAC
Found at i:16431673 original size:26 final size:26
Alignment explanation
Indices: 16431640--16431695 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16431630 TGGGTTGACT
16431640 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
** *
16431666 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
16431692 TAAG
1 TAAG
16431696 ATCAAACTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:16433199 original size:158 final size:158
Alignment explanation
Indices: 16432929--16433265 Score: 390
Period size: 158 Copynumber: 2.1 Consensus size: 158
16432919 ATCGGACCGC
* * * * *
16432929 ACCACGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGACCAAGCTGATCCCTGGCTTACGC
1 ACCAAGGGTTGTGGCAGCAGGACCAGCAGCACGCAAGGGGGACCAAGCCGATCCCTGGCTTACGC
* * * * ** * *
16432994 ATTCTGCCTCTCCGACCAGCTGAGTGCCCGCACGCACATTTCGTGGGTTGGTTTAGGCATA-GGG
66 ATTATGCCTCTCCGACCAGCTCAGTGCCCGCACACACATTTCATGGGTTGACTTAGGCATATAGA
* ** *
16433058 GTTCATTCCACGTCTAGTTCC-CAGTTGG
131 GTTCATTCCACGTCTA-TGCCACAGCCGA
* * ** * *
16433086 ATCAAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTTGCG
1 ACCAAGGGTTGTGGCAGCAGGACCAGCAGCACGCA-AGGGGGACCAAGCCGATCCCTGGCTTACG
* * * *
16433151 CATTATGCCTCTCTGTCCAGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATAG
65 CATTATGCCTCTCCGACCAGCTCAGTGCCCGCACACACATTTCATGGGTTGACTTAGGCATATAG
*
16433216 AGTTCATTCCATGTCTATGCCACAGCCGA
130 AGTTCATTCCACGTCTATGCCACAGCCGA
16433245 ACCAAGGGTTGTGGCAGCAGG
1 ACCAAGGGTTGTGGCAGCAGG
16433266 GCCGGCAGTG
Statistics
Matches: 148, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 30 0.20
158 78 0.53
159 40 0.27
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
ACCAAGGGTTGTGGCAGCAGGACCAGCAGCACGCAAGGGGGACCAAGCCGATCCCTGGCTTACGC
ATTATGCCTCTCCGACCAGCTCAGTGCCCGCACACACATTTCATGGGTTGACTTAGGCATATAGA
GTTCATTCCACGTCTATGCCACAGCCGA
Found at i:16433415 original size:26 final size:26
Alignment explanation
Indices: 16433379--16433431 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16433369 GTTCACTTTG
16433379 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
16433405 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16433431 G
1 G
16433432 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16433616 original size:184 final size:184
Alignment explanation
Indices: 16433302--16434168 Score: 624
Period size: 184 Copynumber: 4.7 Consensus size: 184
16433292 GAGGAGGGTC
* * * * * ** * * * **
16433302 GGGCTGATCCCCGGCTTACGCATTATGCCTCTTCGGCCGGTTGAGCACTCACACGCTTGTTTCGT
1 GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGT
* * *
16433367 GGGTTCA-CTTTGGCATACGGAGTTCA-TCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
66 GGGTT-AGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
16433430 AGATCGGACCAAACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGGGGGAAT
129 AGATCGGACCAAACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGAAT
* * *
16433486 GGGCCGATCCCC-GACTTGTGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGTACGCTCA-TTCT
1 GGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTC-
* * * *
16433549 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGTATACGGAGTTCATTCCTAGTCTA
64 GTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
16433614 AGATCAGACCAGATCGAGGGTTACAACAGTAGGACCAGTAGCAGGATCAATAGCACGCAGAGGGG
129 AGATCGGACCAAACCGAGGG-T-------T--G--CAGTAGCAGGATCGACAGCACGCAGGGGGG
*
16433679 ACT
182 AAT
* * * ** * * * *
16433682 GGGCTGATCCCCAGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCGCCTGCACGCTCGTTTCAT
1 GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGT
* * * * ** *
16433747 GGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC-T--GCAG-CCGAAT-CAAGGGT-T
66 GGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC-ATTCCCAGTCTAA
* * ** * *** **
16433806 G-T-GG----TAGC-AGGACTG--GTAGCAGGATCGACAGGATATAGAGGGGGGTT
130 GATCGGACCAAACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAG-GGGGGAAT
* * * * * * * * * *
16433853 GGGCTGATTCCCGGCTTACGCATTATGCCTCTCCGGCCTG-GTGAACACTCGCACGCTCGTTTCG
1 GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCC-GACTGAGCGCCCGCACGCTCATTTCG
* * * * * *
16433917 TGGGTTAACTTTGGCATACAGAGTTCATCCCCA-GTCTAAGCGTACGGAGTTCATTCCCAATCTA
65 TGGGTTAGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * *
16433981 AGATCGGACTGAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGGGAAT
129 AGATCGGACCAAACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGAAT
* * * * *
16434037 GGGTCGATTCCCAGCTTGCGCATTCTGCCTCTCCGGCCGATTGAGCGCCCGCACGTTCATTCCGT
1 GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGT
* * * * *
16434102 GGCTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTGTAAG
66 GGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
16434167 AT
131 AT
16434169 TTTGAGCCAT
Statistics
Matches: 517, Mismatches: 127, Indels: 78
0.72 0.18 0.11
Matches are distributed among these distances:
170 17 0.03
171 86 0.17
172 5 0.01
174 6 0.01
175 4 0.01
176 2 0.00
177 1 0.00
178 2 0.00
182 2 0.00
183 13 0.03
184 224 0.43
185 24 0.05
189 1 0.00
190 1 0.00
191 1 0.00
192 6 0.01
193 5 0.01
194 1 0.00
195 1 0.00
196 111 0.21
197 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGT
GGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCAAACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGAAT
Found at i:16435161 original size:158 final size:158
Alignment explanation
Indices: 16434926--16435241 Score: 411
Period size: 158 Copynumber: 2.0 Consensus size: 158
16434916 GCAGGATCGA
* * * *
16434926 CAGCACGTAGGGGGGACCGAGTCGATCCACGACTTATGCATTCTGCCTCTCCGGCCAGCTGAGCG
1 CAGCACGTAGGGGGGACCGAGCCGATCCACGACTTACGCATTCTGCCTCTCCGGCCAGCTAAGCA
* * *
16434991 CCCACACGCACGTTTCGTGGGTTGGCTTGGGCATAGGGGGTTCATTCCACATCTAATTCCCAGCC
66 CCCACACACACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAATTCCCAGCC
*
16435056 AGATCGAGGGTTGTGGCAGTGGGACCGG
131 AGATCGAGGGTTGTGGCAGCGGGACCGG
* * * * * *
16435084 CAGCACGTAGGGGGGACCG-GACCGATCCCCGGCTTGCGCATTCTTCCTCTCTGTCC-GACTAAG
1 CAGCACGTAGGGGGGACCGAG-CCGATCCACGACTTACGCATTCTGCCTCTCCGGCCAG-CTAAG
* * ** *
16435147 CACCCGCACACACGTTTTGTGGGTTGGCTTAGGCATTTGGAGTTCATTCCACGTCTAATTCCCAG
64 CACCCACACACACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAATTCCCAG
* *
16435212 TCGGATCGAGGGTTGTGGCAGCGGGACCGG
129 CCAGATCGAGGGTTGTGGCAGCGGGACCGG
16435242 GCCGATGCCC
Statistics
Matches: 135, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
157 2 0.01
158 133 0.99
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
CAGCACGTAGGGGGGACCGAGCCGATCCACGACTTACGCATTCTGCCTCTCCGGCCAGCTAAGCA
CCCACACACACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAATTCCCAGCC
AGATCGAGGGTTGTGGCAGCGGGACCGG
Found at i:16435512 original size:26 final size:26
Alignment explanation
Indices: 16435475--16435527 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16435465 GTTGGCTTAG
16435475 GCATACAGAGTTCATT-CCAAGTCTAA
1 GCATACAGAGTTCATTCCCAA-TCTAA
16435501 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
16435527 G
1 G
16435528 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16435884 original size:26 final size:26
Alignment explanation
Indices: 16435854--16435906 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16435844 GGTGACTTAG
16435854 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16435880 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16435906 G
1 G
16435907 ATTGGATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16436174 original size:159 final size:159
Alignment explanation
Indices: 16435965--16436383 Score: 445
Period size: 159 Copynumber: 2.6 Consensus size: 159
16435955 GGGACCGAGC
* * * * * * *
16435965 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCCCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * * *
16436030 TGGCTTAGGCATAGGGAGTTTATTCCATGTGTAAGCCCCAG-CCGGACCGAGGGTTATGGTAGCG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTACGGTAACA
*
16436094 GGACTAG-CAGCACGCAGAGGGGGA-CTGGGT
131 GGA-TAGACAGCACGCAG-GGGGGATC-AGGT
* * * * * *
16436124 CGATCCCCAGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCACCTGCACGCTCGTTTCATGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * *
16436189 TGACTTATGTATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAAC
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTACGGTAAC
*
16436252 AGGATCGACAGCACGCAGGGGGGATCAGGT
130 AGGATAGACAGCACGCAGGGGGGATCAGGT
* * * ** * *
16436282 CGAT-CCCTGACTTGTGCATTCTACCTCTCCAGTTGGCTAAGCGCCCCCACGCTCATTTCGTGGG
1 CGATCCCCAG-CTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGG
16436346 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16436384 TACGGAGTTC
Statistics
Matches: 211, Mismatches: 42, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 7 0.03
158 89 0.42
159 112 0.53
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTACGGTAACA
GGATAGACAGCACGCAGGGGGGATCAGGT
Found at i:16436361 original size:158 final size:157
Alignment explanation
Indices: 16435880--16436381 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 157
16435870 CCCAGTCTAA
* ** ** * * *
16435880 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGATGGGACCGAGGGTTGCGGCAGCAAGATCCAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCCAC
* * * * * * * * *
16435944 AGCATGTAGGGGGGACCGAGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTG
65 AGCACGCAGGGGGGACAG-GTCGATCCCT-GACTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCG
*
16436008 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** ** * *
16436038 GCATAGGGAGTTTATTCCATGTGTAAGCCCCAG-CCGGACCGAGGGTTATGGTAGCGGGA-CTAG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCCA-
* * * * *
16436101 CAGCACGCAGAGGGGGACTGGGTCGATCCC-CAGCTTGCGCATTATGCCTCTTCAGCCGGCTCAG
64 CAGCACGCAG-GGGGGAC-AGGTCGATCCCTGA-CTTGCGCATTCTGCCTCTCCAGCCGGCTAAG
* * * * *
16436165 CACCTGCACGCTCGTTTCATGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
16436197 GTATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGTAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCCAC
* * **
16436261 AGCACGCAGGGGGGATCAGGTCGATCCCTGACTTGTGCATTCTACCTCTCCAGTTGGCTAAGCGC
65 AGCACGCAGGGGGGA-CAGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCGC
* *
16436326 CCCCACGCTCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
16436355 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16436382 CATACGGAGT
Statistics
Matches: 269, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 8 0.03
158 136 0.51
159 117 0.43
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCCACA
GCACGCAGGGGGGACAGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCAGCCGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16442701 original size:158 final size:159
Alignment explanation
Indices: 16442410--16442758 Score: 391
Period size: 158 Copynumber: 2.2 Consensus size: 159
16442400 AGCACGCAAA
* * * ** * * **
16442410 GGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATTGGCTGAGCACCTTGCATGCC
1 GGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCAGCTGAACACCTCGCACACC
* * * * * ** *
16442475 CGTTTTATGGGTTGGCTTAGTCATAGGGAGTTCATTCCTTGTCTAAGCCCTAGCTGGGCCAAGGG
66 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
16442540 TTGTGGCAATGAGATCGATAGCACGTCGG
131 TTGTGGCAATGAGATCGATAGCACGTCGG
* *
16442569 GGGGACCG-GACCGATCCCCAGCTTGCGCATTCTACCTCTTCGGTCAGCTGAACACC-CGCACAC
1 GGGGACCGAG-CCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCAGCTGAACACCTCGCACAC
*
16442632 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
65 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGG
* ** **
16442697 GTTGTGGTAGCGAGA-CTGGCAGCACG-CAGAG
130 GTTGTGGCAATGAGATC-GATAGCACGTC-G-G
* *
16442728 GGGGACCGAGCTGATCCCCGGCTTGCGCATT
1 GGGGACCGAGCCGATCCCCAGCTTGCGCATT
16442759 ATGCCTCTTT
Statistics
Matches: 158, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 81 0.51
159 74 0.47
160 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCAGCTGAACACCTCGCACACC
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGG
TTGTGGCAATGAGATCGATAGCACGTCGG
Found at i:16442963 original size:158 final size:159
Alignment explanation
Indices: 16442372--16442997 Score: 549
Period size: 159 Copynumber: 3.9 Consensus size: 159
16442362 CCACGCAGCA
* * * **
16442372 GACCGAGGGTTACAGCAGTAG-GATCGACAGCACGCAAAGGGGACCGAGCCGATCCCCGGCTTGC
1 GACCGAGGGTTGCGGCAGCAGAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGC
* *** * * * * *
16442436 GCATTTTGCCTCTCCGATTGGCTGAGCACCTTGCATGCCCGTTTTATGGGTTGGCTTAGTCATAG
66 GCATTCTGCCTCTCCGACCAGCTGAGCACC-CGCACGCCCGTTTCATGGGTTGACTTAGGCATAG
* *
16442501 GGAGTTCATTCCTTGTCTAAGCCCTAGCTG
130 GGAGTTCATTCCTAGTCTAAGCCCCAGCTG
* * * * *
16442531 GGCCAAGGGTTGTGGCA--ATGAGATCGATAGCACGTC-GGGGGGACCG-GACCGATCCCCAGCT
1 GACCGAGGGTTGCGGCAGCA-GAGATCGACAGCACG-CAGGGGGGACCGAG-CCGATCCCCGGCT
* * ** * * * *
16442592 TGCGCATTCTACCTCTTCGGTCAGCTGAACACCCGCACACCCATTTCATGGGTTGGCTTAGGCAT
63 TGCGCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCAT
**
16442657 AGGGAGTTCATTCC-ATGTCTAAGCCCCAGCCA
128 AGGGAGTTCATTCCTA-GTCTAAGCCCCAGCTG
* * * *
16442689 GACCGAGGGTTGTGGTAGC-GAGA-CTGGCAGCACGCAGAGGGGGACCGAGCTGATCCCCGGCTT
1 GACCGAGGGTTGCGGCAGCAGAGATC-GACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTT
* ** * * * ** * *
16442752 GCGCATTATGCCTCTTTGGCC-GACTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCAT
64 GCGCATTCTGCCTCTCCGACCAG-CTGAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCAT
* ** *
16442816 ACGGAGTTCATTCCTAGTCTAAG-ATCGGACTG
128 AGGGAGTTCATTCCTAGTCTAAGCCCCAG-CTG
* * * * *
16442848 GACCGAGGGTTGCGGCAGCAG-GATCGACAGCACGCAGGGGGGACAGGGTCGATTCCTGGCTTGC
1 GACCGAGGGTTGCGGCAGCAGAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGC
* * *
16442912 GCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT-GT
66 GCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAG-
16442976 GGAGTTCA-TCTCTAGTCTAAGC
130 GGAGTTCATTC-CTAGTCTAAGC
16442998 ATACGAAGTT
Statistics
Matches: 377, Mismatches: 70, Indels: 40
0.77 0.14 0.08
Matches are distributed among these distances:
157 5 0.01
158 176 0.47
159 191 0.51
160 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGCGGCAGCAGAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGC
GCATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGG
GAGTTCATTCCTAGTCTAAGCCCCAGCTG
Found at i:16443147 original size:184 final size:184
Alignment explanation
Indices: 16442812--16443157 Score: 453
Period size: 184 Copynumber: 1.9 Consensus size: 184
16442802 GTTGACTTAT
* * * * *
16442812 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGACTGAACCGAAGGTTGCGGCAGCAGGATCGACA
* * * * * * *
16442877 GCACGCAGGGGGGACAGGGTCGATTCCTGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
66 GCACGCAAGGGGGACAGAGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAACGCC
*
16442942 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATCTCTAGTCTAA
131 CGCACGCTCATTTCGTGGGTTGACTTAGGCATGTGGAGTTCATCTCTAGTCTAA
*
16442996 GCATACGAAGTTCATTCCCAATCTAAGATCGGA-TCGAACCGAAGGTTGCGGTAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGACT-GAACCGAAGGTTGCGGCAGCAGGATCGAC
* * * * ** *
16443060 AGCACGCAAGGGGGACCGAGTGGATCCCCGGGTTACGTATTCTACCTCTCCGGTCGGCTGAACGC
65 AGCACGCAAGGGGGACAGAGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAACGC
* *
16443125 CCGTACGCTCATTT-GATGGGTTGGCTTAGGCAT
130 CCGCACGCTCATTTCG-TGGGTTGACTTAGGCAT
16443158 ACAGAGTTCA
Statistics
Matches: 137, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 135 0.99
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCGGACTGAACCGAAGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACAGAGTCGATCCCCGGCTTACGCATTCTACCTCTCCGACCAGCTGAACGCC
CGCACGCTCATTTCGTGGGTTGACTTAGGCATGTGGAGTTCATCTCTAGTCTAA
Found at i:16443614 original size:392 final size:385
Alignment explanation
Indices: 16442876--16443606 Score: 871
Period size: 392 Copynumber: 1.8 Consensus size: 385
16442866 CAGGATCGAC
* * *
16442876 AGCACGCAGGGGGGACAGGGTCGATTCCTGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGC
1 AGCACGCAGGGGGGACAGAGTCGATTCCTGGCTTACGCATTCTACCTCTCCGACCAGCTGAGCGC
* *
16442941 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATCTCTAGTCTAAGCATACGAAG
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCTCTAGTCTAAGCATACGAAG
* * ** *
16443006 TTCATTCCCAATCTAAGATCGGATCGAACCGAAGGTTGCGGTAGCAGGATCGACAGCACGCAAGG
131 TTCATTCCCAATCTAAGATCAGACCGAACCGAAGGCAGCGGCAGCAGGATCGACAGCACGCAAGG
* * * *
16443071 GGGACCGAGTGGATCCCCGGGTTACGTATTCTACCTCTCCGGTCGGCTGAACGCCCGTACGCTCA
196 GGGACCGAGTGGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAACACCCGCACGCTCA
*
16443136 TTTGATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTT
261 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTT
16443201 GTGGCAGCAAGATCGGCAGCAGGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTATGCTG
326 GT-------AGATCGGCAGCAGGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTATGCTG
16443266 AT
384 AT
* * * *
16443268 AGCACGCAGGGGGGACCGAGTCGA-TCCTCGGCTTACGCATTCTACCTGTCCGGCCTGCTGAGCG
1 AGCACGCAGGGGGGACAGAGTCGATTCCT-GGCTTACGCATTCTACCTCTCCGACCAGCTGAGCG
*
16443332 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACAT-TAC-ATGTCTAAGCATACG
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCT-CTA-GTCTAAGCATACG
* * * * *
16443395 GAGTTCATTCCCAGTCTAAGATTAGACCGGACTGATGCTTATGGCAGCAGGACCAGCAGCAGGAT
128 AAGTTCATTCCCAATCTAAGATCAGACCGAACCGA-----A-GGCAGC--G----GCAGCAGGAT
* * * * * * *
16443460 CGACAGCATGCAGGGGGGACC-AG-GCTGATTCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTT
181 CGACAGCACGCAAGGGGGACCGAGTG--GATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCT
* * * *
16443523 GAGCACCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATCCC
244 GAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC
16443588 CAGCC-AGACCGAGGGTTGT
309 CAGCCGA-ACCGAGGGTTGT
16443607 GGCAGCAGCA
Statistics
Matches: 285, Mismatches: 36, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
391 6 0.02
392 136 0.48
397 1 0.00
398 4 0.01
400 1 0.00
402 1 0.00
403 3 0.01
404 133 0.47
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (385 bp):
AGCACGCAGGGGGGACAGAGTCGATTCCTGGCTTACGCATTCTACCTCTCCGACCAGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCTCTAGTCTAAGCATACGAAG
TTCATTCCCAATCTAAGATCAGACCGAACCGAAGGCAGCGGCAGCAGGATCGACAGCACGCAAGG
GGGACCGAGTGGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAACACCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTT
GTAGATCGGCAGCAGGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTATGCTGAT
Found at i:16443659 original size:392 final size:387
Alignment explanation
Indices: 16442876--16443963 Score: 869
Period size: 404 Copynumber: 2.9 Consensus size: 387
16442866 CAGGATCGAC
* * *
16442876 AGCACGCAGGGGGGACAGGGTCGATTCCTGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGC
1 AGCACGCAGGGGGGACAGAGTCGATTCCTGGCTTACGCATTCTACCTCTCCGACCAGCTGAGCGC
* *
16442941 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATCTCTAGTCTAAGCATACGAAG
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCTCTAGTCTAAGCATACGAAG
* * ** *
16443006 TTCATTCCCAATCTAAGATCGGATCGAACCGAAGGTTGCGGTAGCAGGATCGACAGCACGCAAGG
131 TTCATTCCCAATCTAAGATCAGACCGAACCGAAGGCAGCGGCAGCAGGATCGACAGCACGCAAGG
* * * *
16443071 GGGACCGAGTGGATCCCCGGGTTACGTATTCTACCTCTCCGGTCGGCTGAACGCCCGTACGCTCA
196 GGGACCGAGTGGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAACACCCGCACGCTCA
*
16443136 TTTGATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTT
261 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTT
* * * * * * *
16443201 GTGGCAGCAAGATCGGCAGCAGGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTATGCTG
326 GTGGCAGCAAGATCGACAACAGGCAGAGGAGCATCGGGCAGA----CGGC-GGCACACTATGCTG
16443266 AT
386 AT
* * * *
16443268 AGCACGCAGGGGGGACCGAGTCGA-TCCTCGGCTTACGCATTCTACCTGTCCGGCCTGCTGAGCG
1 AGCACGCAGGGGGGACAGAGTCGATTCCT-GGCTTACGCATTCTACCTCTCCGACCAGCTGAGCG
*
16443332 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACAT-TAC-ATGTCTAAGCATACG
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCT-CTA-GTCTAAGCATACG
* * * * *
16443395 GAGTTCATTCCCAGTCTAAGATTAGACCGGACTGATGCTTATGGCAGCAGGACCAGCAGCAGGAT
128 AAGTTCATTCCCAATCTAAGATCAGACCGAACCGA-----A-GGCAGC--G----GCAGCAGGAT
* * * * * * *
16443460 CGACAGCATGCAGGGGGGACC-AG-GCTGATTCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGTT
181 CGACAGCACGCAAGGGGGACCGAGTG--GATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCT
* * * *
16443523 GAGCACCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATCCC
244 GAACACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC
**
16443588 CAGCC-AGACCGAGGGTTGTGGCAGC-AGCATCGACAACAGG-ATTGGCAGCA-C-GG-AGA-GG
309 CAGCCGA-ACCGAGGGTTGTGGCAGCAAG-ATCGACAACAGGCAGAGG-AGCATCGGGCAGACGG
*
16443646 -GGGAC-CT-TGCTGAT
371 CGGCACACTATGCTGAT
* *
16443660 ----C-C--------C-----CGA-------CTTACGCATTATGCCTCTCCGACC-GACTGAGCG
1 AGCACGCAGGGGGGACAGAGTCGATTCCTGGCTTACGCATTCTACCTCTCCGACCAG-CTGAGCG
* * * * * *
16443699 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCTCTAGTCTAAGCATACGAA
* * * * * * * ** ** *
16443764 GTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCAACAGTAGGATCGACAGCACGCAAG
130 GTTCATTCCCAATCTAAGATCAGACCGAACCGAAGGCAGCGGCAGCAGGATCGACAGCACGCAAG
* * * * * * * *
16443829 GGGGACC-AG-GCCAATCCCCGGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGCGCCTGCACGC
195 GGGGACCGAGTG--GATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAACACCCGCACGC
* * * * * * * *
16443892 CCGTTTCATGGGTTGGCTTAGGCATA-AGAAGTGCATTCCAAGTCTAAACCCCAGTCGGACCGAA
258 TCATTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAG
16443956 GGTTGTGG
322 GGTTGTGG
16443964 TAGCGGGACT
Statistics
Matches: 582, Mismatches: 89, Indels: 87
0.77 0.12 0.11
Matches are distributed among these distances:
354 1 0.00
355 132 0.23
361 4 0.01
366 1 0.00
367 111 0.19
368 1 0.00
374 3 0.01
379 1 0.00
387 1 0.00
388 1 0.00
391 6 0.01
392 143 0.25
393 1 0.00
394 3 0.01
396 2 0.00
397 1 0.00
398 4 0.01
400 1 0.00
401 2 0.00
402 3 0.01
403 9 0.02
404 151 0.26
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (387 bp):
AGCACGCAGGGGGGACAGAGTCGATTCCTGGCTTACGCATTCTACCTCTCCGACCAGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTACATCTCTAGTCTAAGCATACGAAG
TTCATTCCCAATCTAAGATCAGACCGAACCGAAGGCAGCGGCAGCAGGATCGACAGCACGCAAGG
GGGACCGAGTGGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAACACCCGCACGCTCA
TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTT
GTGGCAGCAAGATCGACAACAGGCAGAGGAGCATCGGGCAGACGGCGGCACACTATGCTGAT
Found at i:16443758 original size:26 final size:26
Alignment explanation
Indices: 16443729--16443781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16443719 GTTGACTTAG
16443729 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16443755 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16443781 G
1 G
16443782 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16444433 original size:26 final size:26
Alignment explanation
Indices: 16444397--16444449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16444387 GTTGACTTAG
16444397 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16444423 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16444449 G
1 G
16444450 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16444907 original size:158 final size:156
Alignment explanation
Indices: 16444423--16444929 Score: 500
Period size: 158 Copynumber: 3.2 Consensus size: 156
16444413 CCCAGTCTAA
*
16444423 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAGATCAGACCAAGGGTTGTGGTAGCAAGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-C----CAGACCAAGGGTTGTGGTAGCAGGA
* * * *
16444487 TCGGCAACACGTAGGGGGGACCGGGCCAATCCCCGGCTTGCGCGTTCTGCCTCTTCGGCCGACTG
60 TCGGCAACACGTAGGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTG
** * *
16444552 AGTGGCCGCACGCCCATTTCGTGGGTTGGTTTAG
124 AG-CACCGCACGCTCATTTCGTGGGTTGGCTTAG
** ** * * * **
16444586 GCATGGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTGGCAGTGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCGGC
* * ** * * *
16444650 AACATGTAGAGAGGGACCGGGCTGATCCCCACCTTGCGCATTATGCCTCTTCGG-TCGGCTCAAC
65 AACACGTAG-GGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCT-GGCTGAGC
* *
16444714 ACCCGCACACTCATTTCGTGGGTTGACTTAG
127 A-CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
16444745 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCGGC
* * * * *
16444809 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTACGGCTGGCTGAGCAC
65 AACACGTAGGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCAC
* *
16444874 CTGCACGCTCGTTTCATGGGTTGGCTTAG
129 C-GCACGCTCATTTCGTGGGTTGGCTTAG
*
16444903 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16444930 CATACGGAGT
Statistics
Matches: 276, Mismatches: 56, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 2 0.01
158 126 0.46
159 121 0.44
162 3 0.01
163 21 0.08
164 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAGGATCGGCA
ACACGTAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCACCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16444933 original size:26 final size:26
Alignment explanation
Indices: 16444903--16444955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16444893 GTTGGCTTAG
16444903 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16444929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16444955 G
1 G
16444956 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16445093 original size:355 final size:355
Alignment explanation
Indices: 16444636--16445285 Score: 876
Period size: 355 Copynumber: 1.8 Consensus size: 355
16444626 AAGGGTTGTG
* *
16444636 GCAGTGGGATCGGCAACATGTAGAGAGGGACCGGGCTGATCCCCACCTTGCGCATTATGCCTCTT
1 GCAGTAGGATCGGCAACATGTAGAGAGGGACCGGGCTGATCCCCACCTTACGCATTATGCCTCTT
* * * * * *
16444701 CGGTCGGCTCAACACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG
66 CGGCCGACTCAACACCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAA
* * * *
16444766 TCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATC-GACAGCACGTAGGGGGGATCGGGT
131 TCTAAGATCAGACCAGACCAAGGGTTATGGTAGCAGGATCAG-CAGCACGCACGGGGGACCGGGT
* * * * * * *
16444830 CGATCCTCGGCTTACGCATTCTGCCTCTACG-GCTGGCTGAGCACCTGCACGCTCGTTTCATGGG
195 CGATCCCCGGCTTACGCATTCTGCCTCTCCGATC-GACTGAGCACCGGCACGCCCATTTCATGGG
16444894 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
259 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
16444959 AAACTAGACTGAGGGTTGCGGTAGTAGGACCA
324 AAACTAGACTGAGGGTTGCGGTAGTAGGACCA
* * * * *
16444991 GCAGTAGGATCGGTAGCATGTAG-GGGGCGACTGGGCTGATCCTCGA-CTTACGCATTATGCCTC
1 GCAGTAGGATCGGCAACATGTAGAGAGG-GACCGGGCTGATCC-CCACCTTACGCATTATGCCTC
* * * * *
16445054 TTCGGCCGACTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
64 TTCGGCCGACTCAACACCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
* * * * * * *
16445119 AATCTATGATCGGATCGGACCAAGGGTTATGGTAGCAGGATCAGTAGCACGCACGGGGGACCTGT
129 AATCTAAGATCAGACCAGACCAAGGGTTATGGTAGCAGGATCAGCAGCACGCACGGGGGACCGGG
* *
16445184 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCATCGGCACGCCCATTTCGTGGG
194 TCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCACCGGCACGCCCATTTCATGGG
**
16445249 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
259 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
16445286 CCCAGCCGGA
Statistics
Matches: 251, Mismatches: 40, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
354 3 0.01
355 244 0.97
356 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (355 bp):
GCAGTAGGATCGGCAACATGTAGAGAGGGACCGGGCTGATCCCCACCTTACGCATTATGCCTCTT
CGGCCGACTCAACACCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAA
TCTAAGATCAGACCAGACCAAGGGTTATGGTAGCAGGATCAGCAGCACGCACGGGGGACCGGGTC
GATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCACCGGCACGCCCATTTCATGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAA
ACTAGACTGAGGGTTGCGGTAGTAGGACCA
Found at i:16445421 original size:159 final size:160
Alignment explanation
Indices: 16445073--16445604 Score: 440
Period size: 159 Copynumber: 3.4 Consensus size: 160
16445063 CTGAGCGCCT
* * * * * * * *
16445073 GCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-ATCTATG-ATCGGATCG
1 GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCG
* * * * * * * ** * *
16445136 GACCAAGGGTTATGGTAGCAGGATC-AGTAGCACGCACGGGGG-ACCTGTTCGATCCCCGGCTTA
65 GACCGAGGGTTGTGGCAGCAGGATCGA-CAGCACGTAGGGGGGCACCGGGCCGATCCCCGACTTG
* * * * * * * *
16445199 CGCATTCTGCCTCTCCGATCGACTGAGCATCG
129 CTCATTATACCTCTCCGCTCGGCTAAGCACCC
* * * * * * *
16445231 GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGG
1 GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGG
* *
16445295 ACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCACGTAGAGGGGG-ACCGGGCCGATCCCCGACTTG
66 ACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGTAG-GGGGGCACCGGGCCGATCCCCGACTTG
* * * **
16445358 CAT-ATTATGCCTCAT-CGACT-GGGTCAGTGCCC
129 C-TCATTATACCTC-TCCG-CTCGGCTAAGCACCC
* * * *
16445390 GCACACTTGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCG
1 GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCG
* * * * *
16445453 GACCGAGGGTTGTGGTAGTAGGATCGACAGCATGTAGGGGGGCATCGGGCCGATCCCCGGCTTGC
65 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGCACCGGGCCGATCCCCGACTTGC
* *
16445518 TCATTCTACCTCTCCGGTCGGCTAAGCACCC
130 TCATTATACCTCTCCGCTCGGCTAAGCACCC
16445549 GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16445605 TACGGACTTC
Statistics
Matches: 295, Mismatches: 62, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.01
158 85 0.29
159 199 0.67
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGG
ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGCACCGGGCCGATCCCCGACTTGCT
CATTATACCTCTCCGCTCGGCTAAGCACCC
Found at i:16445626 original size:26 final size:26
Alignment explanation
Indices: 16445576--16445628 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16445566 GTTGACTTAG
* *
16445576 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGACTTCATTCCATATCTAA
16445602 GCATACGGACTTCATTCCCA-ATCTAA
1 GCATACGGACTTCATT-CCATATCTAA
16445628 G
1 G
16445629 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCATATCTAA
Found at i:16446597 original size:26 final size:26
Alignment explanation
Indices: 16446567--16446617 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16446557 GTTGACTTAG
16446567 GCATACAGAGTTCATCCCCAGTCTAC
1 GCATACAGAGTTCATCCCCAGTCTAC
* *
16446593 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
16446618 AGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAC
Found at i:16446736 original size:183 final size:183
Alignment explanation
Indices: 16446409--16446764 Score: 459
Period size: 183 Copynumber: 1.9 Consensus size: 183
16446399 GTTGGCTTAG
* * * *
16446409 GCATACAGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGTAGGATCGGCAG
1 GCATACAGAGTTCATTCCATGTCTAAGACCAGCCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * *
16446474 CACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCC
66 CACG-AGAGGAGGACCGGGCCGATCCCCGGCTTACGAATTATGCCTCTCCGGCCGGCTGAGCGCC
**
16446539 TGCACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAC
130 CACACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAC
* * *
16446593 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGACCAG-CCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
16446657 AGCACG-TAGGAGGACCGGGCCGATCCCTGGCTTACGAATTCTGCCTC-CCTGGTCGGCTGAGCG
64 AGCACGAGAGGAGGACCGGGCCGATCCCCGGCTTACGAATTATGCCTCTCC-GGCCGGCTGAGCG
* **
16446720 CCCACACGTC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
128 CCCACAC-TCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
16446765 TCCATGTCTA
Statistics
Matches: 148, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
182 2 0.01
183 83 0.56
184 27 0.18
185 36 0.24
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCATGTCTAAGACCAGCCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGAGAGGAGGACCGGGCCGATCCCCGGCTTACGAATTATGCCTCTCCGGCCGGCTGAGCGCCC
ACACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAC
Found at i:16446892 original size:341 final size:343
Alignment explanation
Indices: 16446183--16446934 Score: 872
Period size: 341 Copynumber: 2.2 Consensus size: 343
16446173 CCATTTCATT
* * * *
16446183 CCCGTTCGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATATGGA
1 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATCCCA-GTCTAAGCATACGGA
*
16446248 GTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGCAGGATCG
64 GTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT-----AGCA-G---AGCAGCAGGATCG
* * * * * *
16446313 ACAGCATGCAGGGGGGACCTGGTCGATCCCAGGCTTGCACATTCTACCTCTCTGACCCACTGAGC
120 ACAGCACGCAGGGAGGACCGGGCCGATCCCAGGCTTACACATTCTACCTCCCTGACCCACTGAGC
*
16446378 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAGCC
185 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAACC
* * * * * **
16446443 GGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTA
250 GGACAGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTAATCCCCAACTTA
* * *
16446508 CGCATTATGCCTCTCCGGCCGGCTGAGCG
315 CACATTATGCCTCTCCGACCGGCTCAGCG
* * * * *
16446537 CCTGCACTCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTACGCATACGGA
1 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCAT-CCCAGTCTAAGCATACGGA
* * *
16446602 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT-GC-G-GCAGCAGGATCGACAGCACGT
64 GTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTAGCAGAGCAGCAGGATCGACAGCACGC
* * ** **
16446664 A-GGAGGACCGGGCCGATCCCTGGCTTACGA-ATTCTGCCTCCCTGGTCGGCTGAGCG-CC-CAC
129 AGGGAGGACCGGGCCGATCCCAGGCTTAC-ACATTCTACCTCCCTGACCCACTGAGCGCCCGCAC
**
16446725 ACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACA
193 AC-T-CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG-CCCAACCGGACA
* *
16446790 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGA-CGGGCTAATCCCCAACTTGCACAT
255 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTAATCCCCAACTTACACAT
* * *
16446854 TATGCCTTTTCGATCGGCTCAGCG
320 TATGCCTCTCCGACCGGCTCAGCG
* *
16446878 CCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTTATTCCCAGTCTAAG
1 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCA-TCCCAGTCTAAG
16446935 ATCCAACCAG
Statistics
Matches: 340, Mismatches: 51, Indels: 27
0.81 0.12 0.06
Matches are distributed among these distances:
339 5 0.01
340 3 0.01
341 172 0.51
342 68 0.20
346 1 0.00
348 2 0.01
354 85 0.25
355 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (343 bp):
CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATCCCAGTCTAAGCATACGGAGT
TCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTAGCAGAGCAGCAGGATCGACAGCACGCAG
GGAGGACCGGGCCGATCCCAGGCTTACACATTCTACCTCCCTGACCCACTGAGCGCCCGCACACT
CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCAACCGGACAGAGGGT
TGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTAATCCCCAACTTACACATTATGCC
TCTCCGACCGGCTCAGCG
Found at i:16446918 original size:158 final size:157
Alignment explanation
Indices: 16446593--16447093 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 157
16446583 CCCAGTCTAC
** * *
16446593 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCAGA-CAGAGGGTTGCGGCAGCAGGACCG
* * ** *** * * * *
16446655 ACAGCACGTA-GGAGGACCGGGCCGATCCCTGGCTTACGA-ATTCTGCCTC-CCTGGTCGGCTGA
63 ACAGCACGCAGGGGGGACCGGGCTAATCCCCAACTTGC-ACATTATGCCTCTCC-GATCGGCTCA
*
16446717 GCGCCCACACG-TCCGTTTCATGGGTTGGCTTAG
126 GCGCCCACACGCT-CGTTTCGTGGGTT-GCTTAG
* * * *
16446750 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGGTTGTGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACAGAGGGTTGCGGCAGCAGGACCGACA
* *
16446815 GCACGCAGAGGGGGA-CGGGCTAATCCCCAACTTGCACATTATGCCTTTTCGATCGGCTCAGCGC
66 GCACGCAG-GGGGGACCGGGCTAATCCCCAACTTGCACATTATGCCTCTCCGATCGGCTCAGCGC
** *
16446879 CCGTACGCTCGTTTCGTGGGTTGACTTAT
130 CCACACGCTCGTTTCGTGGGTTG-CTTAG
* ** * * *
16446908 GCATACGGAGTTTATTCCCA-GTCTAAGATCCAACCAGACTGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACAGAGGGTTGCGGCAGCAGGACCGAC
* * * * * *
16446972 AGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCTAATCCCCAACTTGCACATTATGCCTCTCCGATCGGCTCAGCGC
*
16447037 CCACACGCTCGTTTTGTGGGTTTGCTTAG
130 CCACACGCTCGTTTCGTGGG-TTGCTTAG
*
16447066 GCATACTGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16447094 ATACGGAGTT
Statistics
Matches: 283, Mismatches: 48, Indels: 25
0.79 0.13 0.07
Matches are distributed among these distances:
156 4 0.01
157 67 0.24
158 199 0.70
159 13 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACAGAGGGTTGCGGCAGCAGGACCGACA
GCACGCAGGGGGGACCGGGCTAATCCCCAACTTGCACATTATGCCTCTCCGATCGGCTCAGCGCC
CACACGCTCGTTTCGTGGGTTGCTTAG
Found at i:16447102 original size:26 final size:26
Alignment explanation
Indices: 16447066--16447118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16447056 GTTTGCTTAG
*
16447066 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16447092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16447118 G
1 G
16447119 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16447823 original size:26 final size:26
Alignment explanation
Indices: 16447787--16447839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16447777 GTTGACTTAG
*
16447787 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
16447813 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
16447839 G
1 G
16447840 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:16448195 original size:159 final size:156
Alignment explanation
Indices: 16447820--16448196 Score: 377
Period size: 159 Copynumber: 2.4 Consensus size: 156
16447810 TAAGCATACA
* * * * *
16447820 GAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGATAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATAG-CAGCACGCA
* * * *
16447885 GGGGGACCAGGCCGATCCCCGACTTGCACATTCTGCCTCTACGCCCGGTTAAGCTCCCGCACGCC
65 GGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTACGCCCGGCTAAGCACCCGCACACC
* * *
16447950 CGTTTTGTGGGTTGGCTGAGGCATAGG
130 CATTTCGTGGGTTGACTGAGGCATAGG
** * * *
16447977 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGA-CTGAGGGTTGTGGCAGC-GAGATTGGCAGCA
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATC-GAGGGTTGCGGTAGCAG-GA-TAGCAGCA
* * * * * * *
16448038 CGCAGAGGGGGATC-GAGTCGATCCCCGATTTGCGCATTATGCCTCTCCGGCCGGCTCAGCACCC
61 CGC--AGGGGGACCAG-GCCGATCCCCGACTTGCACATTATGCCTCTACGCCCGGCTAAGCACCC
* * *
16448102 GCACACTCATTTCGTGGGTTGACTTAGGCATATG
123 GCACACCCATTTCGTGGGTTGACTGAGGCATAGG
*
16448136 GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGACTAGCAGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGA-TAGCAGCA
16448197 GGATCGATAG
Statistics
Matches: 175, Mismatches: 33, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
156 5 0.03
157 41 0.23
158 8 0.05
159 116 0.66
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATAGCAGCACGCAG
GGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTACGCCCGGCTAAGCACCCGCACACCC
ATTTCGTGGGTTGACTGAGGCATAGG
Found at i:16449974 original size:27 final size:27
Alignment explanation
Indices: 16449944--16450008 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
16449934 CAAGGGGAAG
* *
16449944 GACCGTGACCAGGAGTCCAAGGATAGA
1 GACCGAGACCAGGAGACCAAGGATAGA
****
16449971 GACCGAGACCTTTCGACCAAGGATAGA
1 GACCGAGACCAGGAGACCAAGGATAGA
16449998 GACCGAGACCA
1 GACCGAGACCA
16450009 TTCGACCAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.26, G:0.29, T:0.11
Consensus pattern (27 bp):
GACCGAGACCAGGAGACCAAGGATAGA
Found at i:16450012 original size:27 final size:27
Alignment explanation
Indices: 16449960--16450021 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
16449950 GACCAGGAGT
*
16449960 CCAAGGATAGAGACCGAGACCTTTCGA
1 CCAAGGATAGAGACCGAGACCATTCGA
16449987 CCAAGGATAGAGACCGAGACCATTCGA
1 CCAAGGATAGAGACCGAGACCATTCGA
16450014 CCAAGGAT
1 CCAAGGAT
16450022 GGCAAGAGGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.35, C:0.26, G:0.26, T:0.13
Consensus pattern (27 bp):
CCAAGGATAGAGACCGAGACCATTCGA
Found at i:16455721 original size:159 final size:157
Alignment explanation
Indices: 16455450--16455918 Score: 485
Period size: 159 Copynumber: 3.0 Consensus size: 157
16455440 AAGATTAGAC
** * * *
16455450 CAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGGGGGGACCGGGCCTATCCCTGGCTTG
1 CAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCC-GACTTG
* * * *
16455515 CGCATTCTGCCTCTCCGATCGGCTGAGCCCCCGCACGC-CTGTTTCATGGGCTGGCTTAGGCATA
65 CGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATA
*
16455579 GGGAGTTCATTCCATGTCTAAGCCCCAAT
129 CGGAGTTCATTCCATGTCTAAGCCCCAAT
* * * *
16455608 CGGACCGAGGGTTGTGCCAGTGGGACCGACAAG-ACGCAGAGGGGGACCGGGTCGATCCTCGACT
1 CAGACCGAGGGTTGTGGCAGTAGGATCGAC-AGCACGCAG-GGGGGACCGGGTCGATCC-CGACT
* * * * * * *
16455672 TGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGAATGCTCATTTCATGGTTTGACTTAGGCAT
63 TGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
*****
16455737 ACGGAGTTCATTCCCA-GTCTAAGATTGGAT
128 ACGGAGTTCATT-CCATGTCTAAGCCCCAAT
* * * * * * *
16455767 CAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGGTCCCCAGCTTA
1 CAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCGA-CTTG
* * * * * * *
16455832 CGCATTTTGCCACTCCTACCGGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTTGCTTAGGCATAC
65 CGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
16455897 GGAGTGCATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
16455919 ATACAAAGTT
Statistics
Matches: 250, Mismatches: 53, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 118 0.47
159 122 0.49
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
CAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCGACTTGC
GCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAAT
Found at i:16455907 original size:158 final size:156
Alignment explanation
Indices: 16455416--16455917 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 156
16455406 CCCAATCTAA
* * **
16455416 GCATACAGAGTTCATTCCCA-GTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAGATCAGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * *
16455480 AGCACGCAGGGGGGACCGGGCCTATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCCC
65 AGCACGCAGGGGGGACCGGGTCGATCCC-CGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
16455545 CCGCACGC-CTGTTTCATGGGCTGGCTTAG
129 CCGCACGCTC-GTTTCAT-GGTTTGCTTAG
* *** * * * *
16455574 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGCCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTAGATCAGACCGAGGGTTGTGGCAGTAGGATCGAC
* * *
16455638 AAG-ACGCAGAGGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGC
65 -AGCACGCAG-GGGGGACCGGGTCGATCCCCG-CTTGCGCATTATGCCTCTCCGACCGGCTGAGC
* * *
16455702 GCCCGAATGCTCATTTCATGGTTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGTTTG-CTTAG
* * * *
16455733 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAGATCAGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * *
16455797 AGCACGCAGGGGGGACCAGGTCGGTCCCCAGCTTACGCATTTTGCCACTCCTACCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCC-GCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
16455862 CTGCACGCTCGTTTCGTAGGTTTGCTTAG
129 CCGCACGCTCGTTTCAT-GGTTTGCTTAG
*
16455891 GCATACGGAGTGCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16455918 CATACAAAGT
Statistics
Matches: 278, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 143 0.51
159 125 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTAGATCAGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCATGGTTTGCTTAG
Found at i:16456117 original size:26 final size:26
Alignment explanation
Indices: 16456087--16456139 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16456077 GTTGACTTAG
*
16456087 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16456113 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16456139 G
1 G
16456140 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16457530 original size:26 final size:26
Alignment explanation
Indices: 16457491--16457543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16457481 GTTGGCTTAG
*
16457491 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCACA-GTCTAA
*
16457517 GCATACGAATTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
16457543 G
1 G
16457544 AATTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:16458249 original size:26 final size:26
Alignment explanation
Indices: 16458213--16458265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16458203 GTTGACTTAG
16458213 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16458239 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16458265 G
1 G
16458266 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16458709 original size:261 final size:260
Alignment explanation
Indices: 16458239--16458714 Score: 625
Period size: 261 Copynumber: 1.8 Consensus size: 260
16458229 CCCAGTCTAA
* * * *
16458239 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGACAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATA
* * * * * **
16458304 AACGTAGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAACGCCCGT
66 AACGTAGGGGACCAGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGATGAACACCCAC
* * *
16458369 ACACCCATTTCGTGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCCAGCCGGACC
131 ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACC
16458434 AAGGGTTCTGGCAGCAGGACCAGCAGCACTCAGCGCCCGCACGCTCCTTTTGTGGGTTGACTTAG
196 AAGGGTTCTGGCAGCAGGACCAGCAGCACTCAGCGCCCGCACGCTCCTTTTGTGGGTTGACTTAG
** *
16458499 GCATACGAAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATA
* * * * * * *
16458563 GCACGTAGGGGGGACC-GGGCTGATCCCCGGCTTACGCGTTCTACCT-TTCGGCCGGATGAGCAC
66 -AACGTA--GGGGACCAGGTC-GATCCCCAGCTTACGCATTCTACCTCTCCGACCGGATGAACAC
* *
16458626 CCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCCAACCG
127 CCACACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * * *
16458691 GACCGAGGTTTGTGGCAGCGGGAC
192 GACCAAGGGTTCTGGCAGCAGGAC
16458715 GGTAGGACGC
Statistics
Matches: 182, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
259 28 0.15
260 34 0.19
261 93 0.51
262 27 0.15
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (260 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCGATA
AACGTAGGGGACCAGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGATGAACACCCAC
ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACC
AAGGGTTCTGGCAGCAGGACCAGCAGCACTCAGCGCCCGCACGCTCCTTTTGTGGGTTGACTTAG
Found at i:16458837 original size:158 final size:158
Alignment explanation
Indices: 16458469--16458998 Score: 579
Period size: 159 Copynumber: 3.4 Consensus size: 158
16458459 GCACTCAGCG
* * * *
16458469 CCCGCACGCTCCTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGACC
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAACC
* *
16458533 GGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGTAG-GGGGGACCGGGCTGATCCCCGGCTTA
65 GGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTG
* * * *
16458597 CGCGTTCTACCT-TTCGGCCGGATGAGCA
130 CGCATTCTGCCTCTTCGGTCGGCTGAGCA
* * * * * ***
16458625 CCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCCAACC
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA-GATCAACC
* * * * * *
16458690 GGACCGAGGTTTGTGGCAGCGGGA-CGGTAGGACGCAGAGGGGGACCGGGCCGATCCCTGGCTTG
65 GGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTG
* * *
16458754 CGCATTATGCCTCTTCGGTCGGCTTAGCG
130 CGCATTCTGCCTCTTCGGTCGGCTGAGCA
* * *
16458783 CCCGCACGCTCATGTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATTAGAC
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCA-AC
* ** * * * ** *
16458847 CGGACTGAGGGTTACGGCAGCAGGATCAACAGTACGCA-ATGGGGGACCGGATTGATCCCCAGCT
64 CGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGA-GGGGGACCGGGCTGATCCCCGGCT
*
16458911 TGCGCATTCTGCCTC-TCTGGTCGACTGAGCA
128 TGCGCATTCTGCCTCTTC-GGTCGGCTGAGCA
* *
16458942 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
16458999 CATACAGAGT
Statistics
Matches: 304, Mismatches: 60, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
155 3 0.01
156 54 0.18
157 59 0.19
158 85 0.28
159 103 0.34
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAACCG
GACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGC
GCATTCTGCCTCTTCGGTCGGCTGAGCA
Found at i:16459008 original size:26 final size:26
Alignment explanation
Indices: 16458972--16459024 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16458962 GTTGGCTTAG
*
16458972 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
16458998 GCATACAGAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16459024 G
1 G
16459025 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16459733 original size:26 final size:26
Alignment explanation
Indices: 16459697--16459749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16459687 GTTGACTTAG
16459697 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16459723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16459749 G
1 G
16459750 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16460086 original size:159 final size:158
Alignment explanation
Indices: 16459723--16460086 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 158
16459713 CCCAGTCTAA
* * * *
16459723 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCAAAGGTTGCGACAGCAAGATCGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGA-ACCAAGGGTTGCGACAGCAAGACCGAT
* * * *
16459787 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCATGTGCATTCTGCCTCTCTGGTCAGCTGAGTGC
65 AGCACGCAGAGGGGACCGGGCTGATCCCCGACATGTGCATTCTGCCTCTCTGATCAGCTCAGTGC
* *
16459852 CCGCACACCCATTTCGTGGGTTGGCTTAG
130 CCGCACACCCATTTCGTGGGTTGACTTAC
* * * ** * * * * * *
16459881 GCATAGGGAGTTCAGTCCGT-GTCGAAGGCCCAGTCAG-ACCGAGGGTTGTGGCAGCGAGACCGA
1 GCATACGGAGTTCATTCC-TAGTCTAA-GATCAGACCGAACCAAGGGTTGCGACAGCAAGACCGA
* * * *
16459944 TAGCACGTAGAAGGGGATCGGGGC-GATCCCCGACTTGTGCATTCTGCCTCT-TCGATCGGCTCA
64 TAGCACGCAG-AGGGGA-CCGGGCTGATCCCCGACATGTGCATTCTGCCTCTCT-GATCAGCTCA
* ***
16460007 GTGCCCGCACGCTTGTTTCGTGGGTTGACTTAC
126 GTGCCCGCACACCCATTTCGTGGGTTGACTTAC
* *
16460040 GCATACGGAGTTCATTGCTAGTCTAAGATCAGACCGAACTAAGGGTT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTT
16460087 ACGATAGTAG
Statistics
Matches: 159, Mismatches: 39, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
158 58 0.36
159 96 0.60
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCAAGGGTTGCGACAGCAAGACCGATA
GCACGCAGAGGGGACCGGGCTGATCCCCGACATGTGCATTCTGCCTCTCTGATCAGCTCAGTGCC
CGCACACCCATTTCGTGGGTTGACTTAC
Found at i:16460621 original size:26 final size:26
Alignment explanation
Indices: 16460584--16460636 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16460574 GTTGACTTAG
*
16460584 GCATACATAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16460610 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16460636 G
1 G
16460637 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16461138 original size:158 final size:158
Alignment explanation
Indices: 16460610--16461265 Score: 621
Period size: 158 Copynumber: 4.2 Consensus size: 158
16460600 CCTAGTCTAA
* * *
16460610 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
16460675 GCATGCAGGGGGGACCGAGCCCATCCCTGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
16460740 TGCACGCCCATTTCATGGGTTGGCTTAG
131 CGCACGCTCATTTCATGGGTTGACTTAG
* ** *
16460768 GCATA--GA-TGTCATT-CCATGTCTAAG-CCCCAGCCGGGCCGAGGGTTG-GGCAGC-GAGA-C
1 GCATACGGAGT-TCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAG-GATC
* * * * * * * * *
16460825 CAGCAGCACGCAGAGGGGGACCGAGCCGGTCCCCAGCTTGCGCATTATACCTTTTCGACTGGCTC
62 GA-CAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTG
** *
16460890 AGCGCCCGCACGCTCATTTCGGGGGTTGACTTAT
125 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * ** * * * *
16460924 GCATACGAAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTACCGCAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
16460989 GCACCCAGGGGGGACTGGGTCGATTCCCGGCTTGTGCATTCTGCCTCTTCGACCGGCTGAGCACC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
16461054 CGTACGCTCGTTTCATGGGTTGACTTAG
131 CGCACGCTCATTTCATGGGTTGACTTAG
* * *
16461082 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * **
16461147 GCACGCA-AGAGGATCGGGCCGGTCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * ** *
16461211 CGTACGCTCGTTTTGTGGGTTGGCTTAG
131 CGCACGCTCATTTCATGGGTTGACTTAG
16461239 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16461266 CATACGGAGT
Statistics
Matches: 400, Mismatches: 83, Indels: 31
0.78 0.16 0.06
Matches are distributed among these distances:
154 2 0.00
155 23 0.06
156 102 0.25
157 93 0.23
158 158 0.40
159 20 0.05
160 2 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:16461268 original size:26 final size:25
Alignment explanation
Indices: 16461239--16461297 Score: 86
Period size: 26 Copynumber: 2.4 Consensus size: 25
16461229 GTTGGCTTAG
16461239 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTACCA-GTCT-A
16461265 GCATACGGAGTTCATTACCAGTCTA
1 GCATACGGAGTTCATTACCAGTCTA
16461290 GCAT-CGGA
1 GCATACGGA
16461298 CCGGACTGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.12
25 5 0.16
26 20 0.62
27 3 0.09
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTACCAGTCTA
Found at i:16462148 original size:26 final size:26
Alignment explanation
Indices: 16462119--16462171 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16462109 GTTGGCTTAG
16462119 GCATACGAAGTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16462145 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16462171 G
1 G
16462172 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16462662 original size:26 final size:26
Alignment explanation
Indices: 16462626--16462678 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16462616 GTTGGCTTAG
16462626 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16462652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16462678 G
1 G
16462679 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16462667 original size:507 final size:505
Alignment explanation
Indices: 16461580--16462779 Score: 1342
Period size: 507 Copynumber: 2.4 Consensus size: 505
16461570 TCTTCGGGCG
* * * * *
16461580 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCAT-TCCAGTCTAAG
* *
16461645 CACACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGA-GGTT---TG--TGA-CAGCA--A
64 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGTGCAGGACCAGCAGCA
* *
16461701 -GATCGACAGCACGT-AGGGTTGG-CCGAGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGATC
128 GGATCGACAGCACGTAAGGG--GGACCGAGCCGATCCCCGGCTTAGGCATTCTGCCTCTCCGACC
* * *
16461763 GGTTGAGCACCTGCATGCCCGTTTCGTGGTTAGCCTAGGCATAGGGAGTTCACTCCATGTCTAAG
191 GGTTGAGCACCTGCACGCCCATTTCGTGGTTAGCCTAGGCATAGGGAGTTCACTCCACGTCTAAG
* * *
16461828 CCCCAACCGGACCAAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGATCGGGCTGATCC
256 CCCCAACCAGACCAAGGGTTGTGGCAGCGAGACCGACAGCA-GCAGAGGAGGA--GGGCTGATCC
* * * * ** * *
16461893 TCGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGCGCTCGTACGCTCATTTCGTGGGTTGACTT
318 CCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTT
* * * * * * *
16461958 ATGCCTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTGTTGCGGTAGCACGATCGA
383 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACGATCGA
* * *
16462023 CAGCACGTAAGGGGGGATCGGGCCAATCCTCGACTTATCCATTTTACCTCTCTGACCA
448 CAGCACGTAAGGGGGGATCGGGCCAATCCCCGACTTATCCATTCTACCTCTCCGACCA
* *
16462081 GCTGAGTGCCCGTACGCTCCTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCA-GTCTAAG
* *
16462146 CATACGCAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGATAGCAGGACCAGCAG
64 CATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCG-T-GCAGGACCAGCAG
* * * *
16462211 CAGGATCGATAGCACGTAAGGGGGACCGAGCTGATCCCCGGCTTGGGCATTCTGCCTCTCCGGCC
126 CAGGATCGACAGCACGTAAGGGGGACCGAGCCGATCCCCGGCTTAGGCATTCTGCCTCTCCGACC
* * * *
16462276 GGTTGAGCA-CTCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTA
191 GGTTGAGCACCT-GCACGCCCATTTCGT-GGTTAGCCTAGGCATAGGGAGTTCACTCCACGTCTA
** * * * *
16462340 AGCCCCAGTCAGACCGAGGGTTGTGGTC-GCGAGACCGGCAGCA-CATA-GAGG-GGGTTGATCC
254 AGCCCCAACCAGACCAAGGGTTGTGG-CAGCGAGACCGACAGCAGCAGAGGAGGAGGGCTGATCC
* *
16462401 CCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGTGCCCG-AGCGCTCGTTTCATGGGTTGACT
318 CCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGTA-CGCTCATTTCATGGGTTGACT
* * * *
16462465 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGTAGGATCG
382 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACGATCG
* ** * * * * *
16462530 ACAGCACG-CAGGGGGGATCGGGCCTGTCCCCG-GTTGGTGCATTCTGCCTCTCCGACCG
447 ACAGCACGTAAGGGGGGATCGGGCCAATCCCCGACTT-ATCCATTCTACCTCTCCGACCA
*
16462588 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCA-GTCTAAG
* * *
16462653 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAGCTGCAGGACTAGCAG
64 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGC-G-TGCAGGACCAGCAG
* * ** * * * ** *
16462718 CAGGATCGACAGCACGCAGGGGGGACAAAGTCGATCCCTGACTTTCGCATTCTACCTCTCCG
126 CAGGATCGACAGCACGTAAGGGGGACCGAGCCGATCCCCGGCTTAGGCATTCTGCCTCTCCG
16462780 GTTGGCCTCT
Statistics
Matches: 587, Mismatches: 87, Indels: 44
0.82 0.12 0.06
Matches are distributed among these distances:
500 5 0.01
501 88 0.15
502 4 0.01
506 3 0.01
507 202 0.34
508 126 0.21
509 2 0.00
510 5 0.01
511 3 0.01
512 8 0.01
513 69 0.12
514 71 0.12
515 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (505 bp):
GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGTGCAGGACCAGCAGCAGGA
TCGACAGCACGTAAGGGGGACCGAGCCGATCCCCGGCTTAGGCATTCTGCCTCTCCGACCGGTTG
AGCACCTGCACGCCCATTTCGTGGTTAGCCTAGGCATAGGGAGTTCACTCCACGTCTAAGCCCCA
ACCAGACCAAGGGTTGTGGCAGCGAGACCGACAGCAGCAGAGGAGGAGGGCTGATCCCCAGCTTG
CGCATTATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACGATCGACAGCACGT
AAGGGGGGATCGGGCCAATCCCCGACTTATCCATTCTACCTCTCCGACCA
Found at i:16462865 original size:26 final size:26
Alignment explanation
Indices: 16462835--16462887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16462825 GTTGACTTAG
*
16462835 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16462861 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16462887 G
1 G
16462888 ATCTAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16463229 original size:26 final size:26
Alignment explanation
Indices: 16463179--16463231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16463169 GCTGGCTTAG
*
16463179 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16463205 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16463231 G
1 G
16463232 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16463312 original size:15 final size:15
Alignment explanation
Indices: 16463288--16463320 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16463278 TAAATTTTTT
16463288 TCGCCCAGGGCACCA
1 TCGCCCAGGGCACCA
*
16463303 TCGCCTAGGGCACCA
1 TCGCCCAGGGCACCA
16463318 TCG
1 TCG
16463321 ACGACATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.42, G:0.27, T:0.12
Consensus pattern (15 bp):
TCGCCCAGGGCACCA
Found at i:16463919 original size:26 final size:26
Alignment explanation
Indices: 16463888--16463940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16463878 GTTCACTTGG
16463888 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16463914 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16463940 G
1 G
16463941 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16464467 original size:26 final size:26
Alignment explanation
Indices: 16464411--16464461 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16464401 AGGCATACGA
16464411 AGTTCATTCCATGTCTAAGCATATAG
1 AGTTCATTCCATGTCTAAGCATATAG
16464437 AGTTCATTCCCA-GTCTAA-CAT-TAG
1 AGTTCATT-CCATGTCTAAGCATATAG
16464461 A
1 A
16464462 TCGTTCTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.17
25 3 0.12
26 14 0.58
27 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATATAG
Found at i:16464934 original size:26 final size:26
Alignment explanation
Indices: 16464904--16464956 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16464894 GTTGCCTTAG
16464904 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16464930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16464956 G
1 G
16464957 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16465131 original size:515 final size:511
Alignment explanation
Indices: 16463860--16465142 Score: 1352
Period size: 514 Copynumber: 2.5 Consensus size: 511
16463850 GCTGAGCGTT
* * *
16463860 CGCACGCTCGGTTCATGGGTT-CACTTGGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGA
1 CGCACGCTCGTTTCATGGGTTGC-CTTAGGCATAC-GAGTTCAT-TCCATGTCTAAGCATACGGA
* * * *
16463923 GTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTA--TGGTAG--CAGGATCGACAACACG
63 GTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTACGTAGTAGTACAGGATCGACAGCACG
* * * * * *
16463984 CAAGGGGGACCTGGCCGATCCCCGACTTGCCCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCAC
128 CAAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCAC
** * * *
16464049 GCCCATTTCATGCTTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCC-AGCTGGACTG
193 GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATC-GGACCG
* * * * * * **
16464113 AGGGTTGTGGCAGTGGGACCAGCAGCATGCAGAGGTGGATCGGGTCGATCCCCGACTTGTGCATT
257 AGAGTTATGGCAGCGGGACCAGCAGCACGCAGAAGTGGATCGGGCCGATCCCCGACTTACGCATT
* ** *
16464178 ATACCTCTCCGGCTAGCTCAGTGCTTGCACGATCGTTTCATGGGTTGATTGAGGCATACGGAGTT
322 ATACCTCTCCGGCTAGCTCAGCGCCAGCAAGATCGTTTCATGGGTTGATTGAGGCATACGGAGTT
* * * **
16464243 CATTCCCAGTGTAGGATCAGATCGAACTGAGGGTTGCAGCAACAGTACCGGCAGTAGGATCGGTA
387 CATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT-CAGC-ACAGTA-C-GCA--AGGATCGACA
* * * * * **
16464308 GCACGTAGGGGAGGACCGGGTCGATCCTCGACTTACGCATTCTACCTTTCTGGCCGGCTGAACGT
446 GCACGCAAGGGAGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAACAC
16464373 C
511 C
* * * * * **
16464374 CGGACGCTCATTTCGTGAGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATATAGAG
1 CGCACGCTCGTTTCATG-GGTTGCCTTAGGCATACG-AGTTCATTCCATGTCTAAGCATACGGAG
* * * * * *
16464439 TTCATTCCCAGTCTAACATTAGATCG-TTCTGAAGGTTGCG-A-TAGT--AGGATCGGCAGCACG
64 TTCATTCCCAGTCTAAGATCAGATCGAATC-GAGGGTTACGTAGTAGTACAGGATCGACAGCACG
* * * *
16464499 C-AGGGGGCCCAGGCCT-ATCCCCGGCTTGCGCATTCTGCCTCTCCGGTGGGCTGAGTGCCCGCA
128 CAAGGGGGACC-GGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCA
*
16464562 CACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCG
192 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCG
* *
16464627 AGAGTTATGGCAGCGGGACC-GACAGCACGTAGAAAG-GGATCGGGCCGATCCTCGACTTACGCA
257 AGAGTTATGGCAGCGGGACCAG-CAGCACGCAG-AAGTGGATCGGGCCGATCCCCGACTTACGCA
* * * **
16464690 TTATGCCTTTCCGGCTAGCTCAGCGCCAGCAAGCTCGTTTTGTGGGTTGACTT-AGGCATACGGA
320 TTATACCTCTCCGGCTAGCTCAGCGCCAGCAAGATCGTTTCATGGGTTGA-TTGAGGCATACGGA
* *
16464754 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT-A-C-GA-TA-GC-AGGATCGACAGCA
384 GTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTCAGCACAGTACGCAAGGATCGACAGCA
* * * * * * *
16464813 TGCAAGGGAGGATCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACC
449 CGCAAGGGAGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAACACC
*
16464876 CGCACGCTTGTTTCATGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGT
1 CGCACGCTCGTTTCATGGGTTGCCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGT
* *
16464941 TCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGTAGTAAGACCATCAACAGGATCGAC
65 TCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTAC-GTAGT-AG----T--ACAGGATCGAC
* * * * *
16465006 AGCACGCAAGGGGGGATCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCTGATCGGTTGAGTG
122 AGCACGCAA-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTG
* * * * *
16465071 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
186 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATC
*
16465136 AGACCGA
251 GGACCGA
16465143 AGGTTGTGGC
Statistics
Matches: 631, Mismatches: 108, Indels: 59
0.79 0.14 0.07
Matches are distributed among these distances:
501 70 0.11
502 77 0.12
503 1 0.00
504 1 0.00
505 4 0.01
508 2 0.00
509 2 0.00
511 1 0.00
512 1 0.00
513 16 0.03
514 261 0.41
515 195 0.31
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (511 bp):
CGCACGCTCGTTTCATGGGTTGCCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTACGTAGTAGTACAGGATCGACAGCACGCAA
GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCC
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGAG
TTATGGCAGCGGGACCAGCAGCACGCAGAAGTGGATCGGGCCGATCCCCGACTTACGCATTATAC
CTCTCCGGCTAGCTCAGCGCCAGCAAGATCGTTTCATGGGTTGATTGAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGAACTGAGGGTTCAGCACAGTACGCAAGGATCGACAGCACGCAAGG
GAGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAACACC
Found at i:16465309 original size:26 final size:26
Alignment explanation
Indices: 16465272--16465324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16465262 GTTGACTTAG
*
16465272 GCATACGGAGTGCATCCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
*
16465298 GCATACGAAGTGCATTCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
16465324 G
1 G
16465325 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (26 bp):
GCATACGAAGTGCATCCCCAGTCTAA
Found at i:16466166 original size:26 final size:26
Alignment explanation
Indices: 16466136--16466186 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16466126 GTTGACTTAG
16466136 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16466162 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
16466187 CGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16466841 original size:26 final size:26
Alignment explanation
Indices: 16466805--16466857 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16466795 GTTGACTTAG
* *
16466805 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
* *
16466831 GCATACAGAGTTTATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
16466857 G
1 G
16466858 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:16467352 original size:26 final size:26
Alignment explanation
Indices: 16467302--16467354 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16467292 GTTGGCTTAG
*
16467302 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
16467328 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16467354 G
1 G
16467355 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16470841 original size:158 final size:158
Alignment explanation
Indices: 16470485--16470880 Score: 358
Period size: 158 Copynumber: 2.5 Consensus size: 158
16470475 CCCAATCTAA
* * ** * * **
16470485 GCATACAGAGTTCATTCCCAGTCTAAGATTAGACCACCCCGAGGGTTGTGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGTGCCAGTAGGACCGCAA
* * * *
16470550 GCACGCAGGGGGGACCGAGCCTATCCCTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCCCC
66 GCACGCAGGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTACCTCTCCGACCGGCTCAGCCCC
* *
16470615 CGCACGCCTGTTTCATGGGCTGGCTTAG
131 CGAACGCCTGTTTCATGGGCTGACTTAG
* *** * *
16470643 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGCCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGATCAGACCGAGGGTTGTGCCAGTAGGACCG-
* * * *
16470706 CAAG-ACGCAGAGGGGGACCGGGTCGAT-CCTCGACTTGCGCATT-TGCCTCTCCGGCCGGCTCA
63 CAAGCACGCAG-GGGGGACCGAGCCGATCCCT-GACTTGCGCATTCTACCTCTCCGACCGGCTCA
* * **
16470768 GCGCCCGAATGCTCAT-TTT-ATGGTTTGACTTAG
126 GCCCCCGAACGC-C-TGTTTCATGGGCTGACTTAG
* * ** * *
16470801 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGATCG-AC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGTGCCAGTAGGACCGCA-
16470865 AGCACGCAGGGGGGAC
65 AGCACGCAGGGGGGAC
16470881 TAGGTCGGTC
Statistics
Matches: 187, Mismatches: 40, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.01
157 12 0.06
158 139 0.74
159 34 0.18
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGTGCCAGTAGGACCGCAA
GCACGCAGGGGGGACCGAGCCGATCCCTGACTTGCGCATTCTACCTCTCCGACCGGCTCAGCCCC
CGAACGCCTGTTTCATGGGCTGACTTAG
Found at i:16471190 original size:26 final size:26
Alignment explanation
Indices: 16471154--16471206 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16471144 GTTGACTTAG
* *
16471154 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16471180 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16471206 G
1 G
16471207 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16472464 original size:171 final size:171
Alignment explanation
Indices: 16472147--16472500 Score: 408
Period size: 171 Copynumber: 2.1 Consensus size: 171
16472137 CCACCCGTTC
** * *
16472147 GATCCCCGGCTTGCACATCCTACCCCTCTGGTCGGCTGAGTACCCGCACGCTCATTTTGTGGGTT
1 GATCCCCGGCTTGCACATCCTACCCCTCTGACCGGCTGAGTACCCGCACACTCATTTCGTGGGTT
* ** * *
16472212 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAACAAG
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAAACCGAAGGTTGCGGCAACAAG
* *
16472277 ACCATCAGCAGGATCGACAGCACGCAAGGGGGGATCGGGTT
131 ACCATCAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTT
** ** * * *
16472318 GATCCCCGGCTTGCACATTTTGTCTCTCTGACCGGTTGAGTGCCCGCACACTCATTTCGTGGGTT
1 GATCCCCGGCTTGCACATCCTACCCCTCTGACCGGCTGAGTACCCGCACACTCATTTCGTGGGTT
* * * * * **
16472383 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-TCAAACCGAAGGTTGTGGCAGTA
66 GACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGACC-AGACCAAACCGAAGGTTGCGGCAACA
* *
16472446 GGACCGA-CAGCGGGATCGACAGCACGCAAAGGGGGACCGGGTT
129 AGACC-ATCAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTT
*
16472489 GATCCCCAGCTT
1 GATCCCCGGCTT
16472501 ATGCATTTTG
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
170 3 0.02
171 146 0.96
172 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (171 bp):
GATCCCCGGCTTGCACATCCTACCCCTCTGACCGGCTGAGTACCCGCACACTCATTTCGTGGGTT
GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAAACCGAAGGTTGCGGCAACAAG
ACCATCAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTT
Found at i:16472510 original size:171 final size:170
Alignment explanation
Indices: 16472183--16472588 Score: 438
Period size: 171 Copynumber: 2.4 Consensus size: 170
16472173 TCTGGTCGGC
* * **
16472183 TGAGTACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
1 TGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCC
** * * * *
16472248 CAGACCGGATCGAGGGTTGCGGCAACAAGACCATCAGCAGGATCGACAGCACGCAAGGGGGGATC
65 CAGACCAAACCGAAGGTTGCGGCAACAAGACCATCAGCAGGATCGACAGCACGCAAAGGGGGACC
* * * ** *
16472313 GGGTTGATCCCCGGCTTGCACATTTTGTCTCTCTGACCGGT
130 GGGTTGATCCCCAGCTTACACATTTTGCCTCTCCAACCGAT
* * *
16472354 TGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
1 TGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCC
* * ** * *
16472419 CTAG-TCAAACCGAAGGTTGTGGCAGTAGGACCGA-CAGCGGGATCGACAGCACGCAAAGGGGGA
65 C-AGACCAAACCGAAGGTTGCGGCAACAAGACC-ATCAGCAGGATCGACAGCACGCAAAGGGGGA
** *
16472482 CCGGGTTGATCCCCAGCTTATGCATTTTGCCTTTCCAACCGAT
128 CCGGGTTGATCCCCAGCTTACACATTTTGCCTCTCCAACCGAT
* ** ** * *
16472525 TGAGCGCTTGCACGCTTGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGC
1 TGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC
16472589 ATATGAAGTG
Statistics
Matches: 193, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
170 3 0.02
171 184 0.95
172 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (170 bp):
TGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCC
AGACCAAACCGAAGGTTGCGGCAACAAGACCATCAGCAGGATCGACAGCACGCAAAGGGGGACCG
GGTTGATCCCCAGCTTACACATTTTGCCTCTCCAACCGAT
Found at i:16472606 original size:26 final size:26
Alignment explanation
Indices: 16472558--16472613 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
16472548 TGGGTTGACT
* *
16472558 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTGCATCCCCAGTC
* *
16472584 TAAGCATATGAAGTGCATTCCCAGTC
1 TAAGCATACGAAGTGCATCCCCAGTC
16472610 TAAG
1 TAAG
16472614 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTGCATCCCCAGTC
Found at i:16473268 original size:26 final size:26
Alignment explanation
Indices: 16473232--16473284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16473222 GTTGACTTAG
* *
16473232 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16473258 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16473284 G
1 G
16473285 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16473614 original size:26 final size:26
Alignment explanation
Indices: 16473578--16473627 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16473568 GGCTTAGTCC
*
16473578 TACGGAGTTCATTC-CATGTCTAAGCA
1 TACGAAGTTCATTCACA-GTCTAAGCA
16473604 TACGAAGTTCATTCACAGTCTAAG
1 TACGAAGTTCATTCACAGTCTAAG
16473628 AATTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCACAGTCTAAGCA
Found at i:16474543 original size:171 final size:171
Alignment explanation
Indices: 16474226--16474668 Score: 453
Period size: 171 Copynumber: 2.6 Consensus size: 171
16474216 CCACCCGTTC
* * * ** *
16474226 GATCCCCGGCTTGCACATCCTGCCCCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACGCTCGTTTTGTGGGTT
* * * * ** * *
16474291 GACTTAGGCATACAAAGTTCATTCCCAATCTAAG-ATTGGACCGGATCGAGGGCTGCGGCAACAA
66 GACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCACTAGACCAAACCGAAGGCTGCGGCAACAA
*
16474355 GACCATCAGCAGGATCGACAGCA-GCAAAGGGGGGATCGGGTT
130 GACCATCAGCAGGATCGACAGCACGCAAA-GGGGGACCGGGTT
*
16474397 GATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACGCTCGTTTTGTGGGTT
* * * * * ** *
16474462 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAG-TCAAACCGAAGGTTGTGGCAGTAG
66 GACTTAGGCATACAGAGTTCATTCCA-GTCTAAGCACTAGACCAAACCGAAGGCTGCGGCAACAA
*
16474526 GACCGA-CAGCGGGATCGACAGCACGCAAAGGGGGACCGGGTT
130 GACC-ATCAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTT
* ** * * ** * * ** *
16474568 GATCCCCAGCTTATGCATTTTGCCTTTCCAACCGATTGAGCGCTTGCACGCTTGTTTTGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACGCTCGTTTTGTGGGTT
* * *
16474633 GACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCA
66 GACTTAGGCATACAGAGTTCAT-TCCAGTCTAAGCA
16474669 TATGAAGTGC
Statistics
Matches: 224, Mismatches: 43, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
170 3 0.01
171 210 0.94
172 11 0.05
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (171 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACGCTCGTTTTGTGGGTT
GACTTAGGCATACAGAGTTCATTCCAGTCTAAGCACTAGACCAAACCGAAGGCTGCGGCAACAAG
ACCATCAGCAGGATCGACAGCACGCAAAGGGGGACCGGGTT
Found at i:16474685 original size:26 final size:26
Alignment explanation
Indices: 16474637--16474692 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
16474627 TGGGTTGACT
* *
16474637 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTGCATCCCCAGTC
* *
16474663 TAAGCATATGAAGTGCATTCCCAGTC
1 TAAGCATACGAAGTGCATCCCCAGTC
16474689 TAAG
1 TAAG
16474693 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTGCATCCCCAGTC
Found at i:16475543 original size:26 final size:26
Alignment explanation
Indices: 16475506--16475556 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16475496 GTTGACTTAG
16475506 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16475532 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
16475557 CGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16476562 original size:159 final size:158
Alignment explanation
Indices: 16476300--16476701 Score: 382
Period size: 159 Copynumber: 2.5 Consensus size: 158
16476290 CCAAGCTTGT
* * * * ** * * *
16476300 GCATTGTGCCTCTCCGACTGGCTGAGCGCCCCCACGCTCATTTCGTGGGATGGCTTAGGCATAGG
1 GCATTATGCCTCTCCGACCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACG
* ** * * * * *
16476365 GAGTTCATTCCATATCTAAGCCCCAG-TCGGA-CTGAGGGTTGTGGCAGCGGGACCGACAGCAAG
66 GAGTTCATTCCATGTCTAAG-ATCAGACCAGATC-AAGGGTTATGGCAGCAGGACCGACAGCAAG
* * * *
16476428 CAGAGGGGGATCGGGTC-GATCCCCGGCTTAC
129 CAG-GGGGGACCAGGCCTG-TCCCCGACTTAC
* * * *
16476459 GCGTTATGCCTCTCC-AGCCGGCTCAGCGCCCGAACGTTCATTTTGTGGGTTGACTTAGGCATAC
1 GCATTATGCCTCTCCGA-CCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * *
16476523 GGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCAAGGGTTATGGTAGCAGGATCGACAGCACG
65 GGAGTTCATT-CCATGTCTAAGATCAGACCAGATCAAGGGTTATGGCAGCAGGACCGACAGCAAG
* *
16476587 CAGGGGGGACCAGGCCTGTCCCTGACTTGC
129 CAGGGGGGACCAGGCCTGTCCCCGACTTAC
* * * * * * *
16476617 GCATTCTGTCTCTCCGATCGGCTGAGCACCCGGATGCTCATTTCGTGGGTTGGCTTAGGCATACG
1 GCATTATGCCTCTCCGACCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACG
16476682 GAGTTCATTCCATGTCTAAG
66 GAGTTCATTCCATGTCTAAG
16476702 CATATGGAGT
Statistics
Matches: 197, Mismatches: 39, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 91 0.46
159 99 0.50
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATTATGCCTCTCCGACCGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCATGTCTAAGATCAGACCAGATCAAGGGTTATGGCAGCAGGACCGACAGCAAGCA
GGGGGGACCAGGCCTGTCCCCGACTTAC
Found at i:16476725 original size:26 final size:26
Alignment explanation
Indices: 16476675--16476727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16476665 GTTGGCTTAG
*
16476675 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
16476701 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16476727 G
1 G
16476728 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16476991 original size:273 final size:273
Alignment explanation
Indices: 16476504--16477019 Score: 689
Period size: 273 Copynumber: 1.9 Consensus size: 273
16476494 GTTCATTTTG
* * *
16476504 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTATGGT
1 TGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCAAGGGTTATGGT
* * * * * * * **
16476569 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCTGTCCCTGACTTGCGCATTCTGTCTCTCCGA
66 AGCAGGATCAACAGCACACAAGAGGGACCAGGCCGGGCCCAGACTTGCGCATTCTACCTCTCCGA
* * * *
16476634 TCGGCTGAGCACCCGGATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
131 TCGGCCGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTAT
* *
16476699 AAGCATATGGAGTTCATTCCCAATCTAAGATTGGACCGGA-TCGAGGGTAGCGACAACAGGACCA
196 AAGCATATGGAGTTCATTCCCAATCTAAGATCGAACCGGACT-GAGGGTAGCGACAACAGGACCA
16476763 GCATGCTAATTTCA
260 GCATGCTAATTTCA
* * *
16476777 TGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGA-CTGAACCGAGGGTTGTGG
1 TGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTATGG
* * * * *
16476841 TAGCAGGATCAACAGTACATAAGAGGGACC-GAGCCGGGCCACAG-CTTGTGCATTCTACCTTTT
65 TAGCAGGATCAACAGCACACAAGAGGGACCAG-GCCGGGCC-CAGACTTGCGCATTCTACCTCTC
* * * *
16476904 CGGTCGGCCGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATG
128 CGATCGGCCGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
16476969 TATAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGT
193 TATAAGCATATGGAGTTCATTCCCAATCTAAGATCGAACCGGACTGAGGGT
16477020 TGCAATAGTA
Statistics
Matches: 208, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
272 3 0.01
273 202 0.97
274 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (273 bp):
TGGGTTGACTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCAGACCAAGGGTTATGGT
AGCAGGATCAACAGCACACAAGAGGGACCAGGCCGGGCCCAGACTTGCGCATTCTACCTCTCCGA
TCGGCCGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTAT
AAGCATATGGAGTTCATTCCCAATCTAAGATCGAACCGGACTGAGGGTAGCGACAACAGGACCAG
CATGCTAATTTCA
Found at i:16477362 original size:26 final size:26
Alignment explanation
Indices: 16477314--16477367 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
16477304 TGGGTTGACT
*
16477314 TAGGCATACGGAGTACATCCCCAGTC
1 TAGGCATACAGAGTACATCCCCAGTC
* * *
16477340 TAGGCATACATAGTTCATTCCCAGTC
1 TAGGCATACAGAGTACATCCCCAGTC
16477366 TA
1 TA
16477368 AGATCGGACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTACATCCCCAGTC
Found at i:16477800 original size:158 final size:158
Alignment explanation
Indices: 16477353--16477843 Score: 510
Period size: 158 Copynumber: 3.1 Consensus size: 158
16477343 GCATACATAG
* * *
16477353 TTCATTCCCAGTCTAAGATCGGACCAGACTGAAGGG-TGTGATAGTTA-GATCGGTAGCATGCTG
1 TTCATTCCCAGTCTAAGATCGGACCAGACTG-AGGGTTGTGGTAG-TAGGATCGGCAGCATGCAG
* * * * * *
16477416 GGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGC-GAGCGCCCGTACGCC
64 GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGAACACT
* * * *
16477480 CATTTCATGGGTTGGCTTAGGCATAGGGAT
129 CGTTTCATGGGTTGACTTAGGCATACGGAA
* ** * * *
16477510 TTCATT-CCATGTCTAAG-CCCCAGCCAGA-TCAAGGGTTGTGGCAGTAGGACCGGCAGCATGCA
1 TTCATTCCCA-GTCTAAGATCGGA-CCAGACT-GAGGGTTGTGGTAGTAGGATCGGCAGCATGCA
* ** * *
16477572 GAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACA
63 G-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGAACA
*
16477637 CTCGTTTCGTGGGTTGACTTAGGCATACGGAA
127 CTCGTTTCATGGGTTGACTTAGGCATACGGAA
* * * * *
16477669 TTCATTCCCATTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAACATGCAGGG
1 TTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGTAGTAGGATCGGCAGCATGCAGGG
* * * * * *
16477734 GGGCCCGAGTCGATCCCCGGCTTCCGTATTCTGCCTCTCC-ATCCGACTGAGCGCCCGCACACTC
66 GGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA-CCGACTGAGCGCCCGAACACTC
* * *
16477798 GTTTCATGGGCTGACTTAGACATACGGAG
130 GTTTCATGGGTTGACTTAGGCATACGGAA
*
16477827 TTCATCCCCAGTCTAAG
1 TTCATTCCCAGTCTAAG
16477844 CATACAGAGT
Statistics
Matches: 271, Mismatches: 52, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 12 0.04
157 38 0.14
158 136 0.50
159 79 0.29
160 6 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
TTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGTAGTAGGATCGGCAGCATGCAGGG
GGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGAACACTCG
TTTCATGGGTTGACTTAGGCATACGGAA
Found at i:16478007 original size:183 final size:184
Alignment explanation
Indices: 16477745--16478198 Score: 551
Period size: 183 Copynumber: 2.5 Consensus size: 184
16477735 GGCCCGAGTC
* * * * *
16477745 GATCCCCGGCTTCCGTATTCTGCCTCTCC-ATCCGACTGAGCGCCCGCACACTCGTTTCATGGGC
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *
16477809 TGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCGAAGATC-
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACAAAGTTCATTCCCAATCGAAGATCG
* * *
16477873 AGACCGGACCGAGGGTTGCGACAGTAGGACCAG-CAGCACGCAGGGGGGACTC-GGCT
130 A-ACCGGACCGAGGGTTACGACAGCAGCA-CAGACAGCACGCAGGGGGGA-TCAGGCT
* *
16477929 GATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* *
16477993 GACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACAAAGTTCATTCCCAATCTAATATCGA
66 GACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACAAAGTTCATTCCCAATCGAAGATCGA
** * **
16478058 ACCGGGTCGAGGGTTACGGCAGCAGCATTGACAGCACGCAGGGGGGATCAGGCT
131 ACCGGACCGAGGGTTACGACAGCAGCACAGACAGCACGCAGGGGGGATCAGGCT
* * ** * * * *
16478112 GTTCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCTCGCACGCTCATTTCGTGTGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
*
16478177 GGCTTAGGCATA-GAGAGTTCAT
66 GACTTAGGCATACG-GAGTTCAT
16478199 TCCATGTTTA
Statistics
Matches: 232, Mismatches: 32, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
182 3 0.01
183 153 0.66
184 76 0.33
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (184 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCAAAGCATACAAAGTTCATTCCCAATCGAAGATCGA
ACCGGACCGAGGGTTACGACAGCAGCACAGACAGCACGCAGGGGGGATCAGGCT
Found at i:16478292 original size:683 final size:684
Alignment explanation
Indices: 16477270--16478589 Score: 1663
Period size: 683 Copynumber: 1.9 Consensus size: 684
16477260 CGTCCGGCCG
* * **
16477270 CTCCGATCGGCTGAGTACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTACATCCC
1 CTCCGACCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATCCC
* * * * * * *
16477335 CAGTCTAGGCATACATAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAAGGGTGTGATAGTTA
66 CAGTCAAAGCATACAAAGTTCATTCCCAATCTAAGATCGAACCAGACTGAAGGGTGTGACAGTCA
** * * *
16477400 GATCGGTAGCATGCTGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGC
131 GATCGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGC
* * *
16477465 GAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCC
196 GAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCC
* * * *
16477530 CAGCCAGATCAAGGGTTGTGGCAGTAGGACCGGCAGCATGCAGAGGGGGATCGGGCCGATCCCCG
261 CAGCCAGATCAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGAACCCCG
* *
16477595 GCTTGTGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACACTCGTTTCGTGGGTTGACTTAGG
326 ACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACACTCGTTTCGTGGGTTGACTTAGG
* * *
16477660 CATACGGAATTCATTCCCATTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAA
391 CATACGGAATTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGATCGACAA
* * * *
16477725 CATGCAGGGGGGCCCGAGTCGATCCCCGGCTTCCGTATTCTGCCTCTCC-ATCCGACTGAGCGCC
456 CATGCAGGGGGGACCGAGCCGATCCCCGACTTCCGCATTCTGCCTCTCCGAT-CGACTGAGCGCC
*
16477789 CGCACACTCGTTTCATGGGCTGACTTAGACATACGGAG-TTCATCCCCA-GTCTAAGCATAC-AG
520 CGCACACTCGTTTCATGGGCTGACTTAGACATACGGAGTTTCAT-CCCATGTCCAAGCATACGA-
* *
16477851 AGTTCATTCCCAGTCGAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGACCAGCAGCACGCAG
583 AGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGTTGAGACAGTAGGACCAGCAGCACGCAG
16477916 GGGGGACTCGGCTGATCCCCGCTTGCGCATTCTGCCT
648 GGGGGACTCGGCTGATCCCCGCTTGCGCATTCTGCCT
* * *
16477953 CTCCGACCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
1 CTCCGACCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATCCC
* ** *
16478018 CAGTCAAAGCATACAAAGTTCATTCCCAATCTAATATCGAACC-GGGTCG-AGGGT-TACGGCAG
66 CAGTCAAAGCATACAAAGTTCATTCCCAATCTAAGATCGAACCAGACT-GAAGGGTGT--GACAG
* * * * *
16478080 -CAGCATTGACAGCACGCAGGGGGGA-TCAGGCTGTTCCCCGGCTTGCGCATTCTGCCTCTCTG-
128 TCAG-ATCGACAGCACGCAGGGGGGACT-AGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
* * * * * *
16478142 GTCGGCTGAGCGCTCGCACGCTCATTTCGTGTGTTGGCTTAGGCATAGAGAGTTCATTCCATGTT
191 CT-GGC-GAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTC
** * * **
16478207 TAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCGGGACCGGTGGCACGCAGAGGGGGACCGGGCC-
254 TAAGCCCCAGCCAGATCAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCG
* * * * ** ** *
16478271 AACCCCGACTTGCGTATTATGCCTCTTCGACTGGCTCAGCGCGTGAATGCTTGTTTCGTGGGTTG
319 AACCCCGACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACACTCGTTTCGTGGGTTG
* *
16478336 ACTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGATAGCAGGA
384 ACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGA
* * * * * * * *
16478401 TCGACAGCATGTAGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTTTGCCTCTCCGGTCGACTG
449 TCGACAACATGCAGGGGGGACCGAGCCGATCCCCGACTTCCGCATTCTGCCTCTCCGATCGACTG
* * * * * * *
16478466 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTTCATTCCATGTCCAAGCAT
514 AGCGCCCGCACACTCGTTTCATGGGCTGACTTAGACATACGGAGTTTCATCCCATGTCCAAGCAT
* * * * *
16478531 ACGAAGTTCATTTCCAGTCTAAGATCGGATCAGACCGAGGGTTGAGATAGTAGGACCAG
579 ACGAAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGGGTTGAGACAGTAGGACCAG
16478590 TAGTAGGATC
Statistics
Matches: 536, Mismatches: 90, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
681 1 0.00
682 11 0.02
683 353 0.66
684 170 0.32
685 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (684 bp):
CTCCGACCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATCCC
CAGTCAAAGCATACAAAGTTCATTCCCAATCTAAGATCGAACCAGACTGAAGGGTGTGACAGTCA
GATCGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGC
GAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCC
CAGCCAGATCAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGCCGAACCCCG
ACTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGAACACTCGTTTCGTGGGTTGACTTAGG
CATACGGAATTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGATCGACAA
CATGCAGGGGGGACCGAGCCGATCCCCGACTTCCGCATTCTGCCTCTCCGATCGACTGAGCGCCC
GCACACTCGTTTCATGGGCTGACTTAGACATACGGAGTTTCATCCCATGTCCAAGCATACGAAGT
TCATTCCCAGTCGAAGATCAGACCAGACCGAGGGTTGAGACAGTAGGACCAGCAGCACGCAGGGG
GGACTCGGCTGATCCCCGCTTGCGCATTCTGCCT
Found at i:16478760 original size:12 final size:12
Alignment explanation
Indices: 16478743--16478783 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
16478733 AGTTCATTCC
16478743 TAGCAGGATTGG
1 TAGCAGGATTGG
***
16478755 TAGCAGGACCAG
1 TAGCAGGATTGG
16478767 TAGCAGGATTGG
1 TAGCAGGATTGG
16478779 TAGCA
1 TAGCA
16478784 CGCAGGGGGG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.37, T:0.20
Consensus pattern (12 bp):
TAGCAGGATTGG
Found at i:16481077 original size:26 final size:26
Alignment explanation
Indices: 16481029--16481081 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16481019 GTTGACTTAG
* *
16481029 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCCTAAGTCTAA
16481055 GCATACGAAGTTCATTCC-AAGTCTAA
1 GCATACGAAGTTCA-TCCTAAGTCTAA
16481081 G
1 G
16481082 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTAAGTCTAA
Found at i:16481360 original size:158 final size:157
Alignment explanation
Indices: 16481052--16481396 Score: 404
Period size: 158 Copynumber: 2.2 Consensus size: 157
16481042 ATCCTCAGTC
* * * *
16481052 TAAGCATACGAAGTTCATTCCAAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCA
1 TAAGCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCA
* * * * * * *
16481117 ACAGCACGCAGGGGGAACGTGTCGATCCCCAACTCACGCATTCTACCTCTTCGGTCGGCTGAGCG
66 ACAACACGAAGGGGGAACGGGTCGATCCCCAACTCACGCATTCTACCTCTCCGGCCGACTGAGCA
* *
16481182 GCCGCACGCCCATTTTGTGGGTTGGCT
131 CCCGCACGCCCATTTTGTGGGCTGGCT
* * * * * *
16481209 TAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGTGGCCGTAGGATCG
1 TAAGCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCA
* * * * **
16481274 ACAACACATAATGGGG-ACTGGGTCGGTCCCCAGCTTGCGCATTCTACCTCTCCGGCCGACTGAG
66 ACAACAC-GAAGGGGGAAC-GGGTCGATCCCCAACTCACGCATTCTACCTCTCCGGCCGACTGAG
***
16481338 CACCCGCACGCTTGTTTTGTGGGCTGGCT
129 CACCCGCACGCCCATTTTGTGGGCTGGCT
*
16481367 TAAGCATACGAAGTTCATTCCATGCCTAAG
1 TAAGCATACGAAGTTCATTCCATGTCTAAG
16481397 CATACGGAGT
Statistics
Matches: 154, Mismatches: 32, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
157 63 0.41
158 91 0.59
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
TAAGCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCA
ACAACACGAAGGGGGAACGGGTCGATCCCCAACTCACGCATTCTACCTCTCCGGCCGACTGAGCA
CCCGCACGCCCATTTTGTGGGCTGGCT
Found at i:16481569 original size:185 final size:183
Alignment explanation
Indices: 16481212--16481948 Score: 530
Period size: 184 Copynumber: 4.0 Consensus size: 183
16481202 GTTGGCTTAG
* * ** * *
16481212 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGTGGCCGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * *** *
16481277 ACACATAATGGGGACTGGGTCGGTCCCC-AGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCAC
65 GCACGTAAGGGGGACCGGGTTAATCCCCGA-CTTGTGCATTCTACCTCTCCGGCCGACTGAGCAC
* ** * * * *
16481341 CCGCACGCTTGTTTTGTGGGCTGGCTTAAGCATACGAAGTTCATTCCATGCCTAA
129 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
16481396 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACCGAGGGTTGCAGCAGCAGGATCGACA
* * *
16481461 GCACGTAGGGGGGGACCGGGTTAATCCCCGACTTGTGCATTCTACCTCTTCGGCCGACTGAGCGC
65 GCACGTA-AGGGGGACCGGGTTAATCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGCAC
*
16481526 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * ** * * * ** ** *
16481581 GC---CCCAG-TCGGA-T-CGAGGGT--TAT--G-GCAA--TA-GG-ACCAGCAGTGGGATCGGC
1 GCATACGGAGTTC--ATTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCAGCAGCAGGATCGAC
* * * *
16481631 AGCACGTAGAAGGGGATC-GGTCTAATCCTCAGCTTGCACATTATGCCTCTCTGATCGGCCTCTC
64 AGCACGTA-AGGGGGACCGGGT-TAATCC-C--C--G-AC-TTGTGCAT-TCT-A----CCTCTC
* * * * * *
16481695 CGGTCGGCTGAGCGCCCACACGCTCGTTT--TGCAGGTTAGCTTAGGCAT-CGGAGTTCATCCCA
114 CGGCCGACTGAGCACCCGCACGCTCGTTTCATG--GGTTGGCTTAGGCATACGGAGTTCATTCCA
*
16481757 AGTCTAA
177 TGTCTAA
* * *
16481764 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GACAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACCGAGGGTTGCAG-CAGCAGGATCGAC
* * * * *
16481828 AGCACGT-AGGGGGACCGGGCTGATCCCCGACTT-TCGTATTCTGCCTCTCCGACCGACTGAGCA
64 AGCACGTAAGGGGGACCGGGTTAATCCCCGACTTGT-GCATTCTACCTCTCCGGCCGACTGAGCA
* * *
16481891 CCCGTACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16481947 GC
1 GC
16481949 CCTAGCCGGA
Statistics
Matches: 425, Mismatches: 85, Indels: 87
0.71 0.14 0.15
Matches are distributed among these distances:
170 3 0.01
171 34 0.08
172 3 0.01
173 1 0.00
174 1 0.00
175 2 0.00
176 2 0.00
177 3 0.01
178 6 0.01
179 5 0.01
180 1 0.00
181 6 0.01
182 48 0.11
183 41 0.10
184 108 0.25
185 97 0.23
186 5 0.01
187 10 0.02
188 4 0.01
189 4 0.01
190 1 0.00
191 1 0.00
192 2 0.00
193 1 0.00
194 1 0.00
195 13 0.03
196 5 0.01
197 17 0.04
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCAGCAGCAGGATCGACAG
CACGTAAGGGGGACCGGGTTAATCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:16481774 original size:26 final size:25
Alignment explanation
Indices: 16481739--16481790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
16481729 GTTAGCTTAG
16481739 GCATCGGAGTTCA-TCCCAAGTCTAA
1 GCATCGGAGTTCATTCCC-AGTCTAA
16481764 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
16481790 G
1 G
16481791 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.16
26 17 0.68
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:16482240 original size:158 final size:154
Alignment explanation
Indices: 16481764--16482264 Score: 468
Period size: 159 Copynumber: 3.2 Consensus size: 154
16481754 CCAAGTCTAA
16481764 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGAT-AGACCGGATCGAGGGTTGCGACAGCAAGATCGAC
* * * *
16481828 AGCACGTAGGGGGACCGGGCTGATCCCCGACTTTCGTATTCTGCCTCTCCGACCGACTGAGCACC
64 AGCACGGAGGGGGACCGGGC-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
* *
16481893 CGTACGCTCATTTCATGGGTTGGCTTAG
128 C-AACGCTCATTTCGTGGGTTGGCTTAG
* * * * ** *
16481921 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGATCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGACCGGATCGAGGGTTGCGACAGCAAGATCGAC
** * * * * * * * *
16481985 AGTTCGTAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTTTCCGGCTGGCTCAGCA
64 AGCACG--GAGGGGGACCG-GGCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* * * ** *
16482050 CCTGAACGCTCGTTTTGTGGGTTCACTCAG
126 CC-CAACGCTCATTTCGTGGGTTGGCTTAG
* * * * ** *
16482080 GCATATGGAGATCATTCCCA-GTCTAAGATAGGACTGGATCGAGGGTTACGATTGTAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATA-GACCGGATCGAGGGTTGCGACAGCAAGATCGAC
* * * * *
16482144 AGCACGCGGGGGGGCCCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAACAC
64 AGCACG-GAGGGGGACCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
*
16482209 CCACAGGCTCATTTCGTGGGTTGGCTTAG
127 CCA-ACGCTCATTTCGTGGGTTGGCTTAG
16482238 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16482265 CATACGGAGT
Statistics
Matches: 264, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 59 0.22
158 87 0.33
159 110 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGACCGGATCGAGGGTTGCGACAGCAAGATCGACAG
CACGGAGGGGGACCGGGCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCAA
CGCTCATTTCGTGGGTTGGCTTAG
Done.