Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 138 of 402
Found at i:16482274 original size:26 final size:26
Alignment explanation
Indices: 16482238--16482290 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16482228 GTTGGCTTAG
16482238 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16482264 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16482290 G
1 G
16482291 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16483110 original size:342 final size:342
Alignment explanation
Indices: 16482423--16483159 Score: 838
Period size: 342 Copynumber: 2.2 Consensus size: 342
16482413 GAGTACCCTT
*
16482423 ACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAGCTCACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTCACGGAGTTCA
* * * *
16482488 TTCCCAATCTAAGATCAAACTGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCATGCAGGGGGGA
66 TTCCCAATCTAAGATCAAACTGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGCGGGGA
* * * * ** * *
16482553 CCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGACTGCCTGCATGCCTGCTTC
131 CCGGGTCGATCCCCGACTTACGCATTCTGCCCCTCCGACCGGCTGACGGCCT-CATGCCTGCTTC
* * *
16482618 GTGGGTTGGCTTAGGCCTAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGATCGAGGGTAGTGG
195 ATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGATCGAGGGTAGTCG
* * * * * * *
16482683 CAGTGGGATCGACACCACGTAAAGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTCT
260 CAGCGGGACCGACACCACGCAAAGGGGCACCGGGCCGATCCCCGACTTACGCATTATACCTCTCC
*
16482748 GGCCAGCTGAGCGCCCGC
325 GGCCAGCTCAGCGCCCGC
** * *
16482766 ACGCTCGTTTTATGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCAT-ATGGAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC-TCACGGAGTTC
* * * *
16482830 ATTCCCAGTCTACGATCGAA-TCGGACCGA-GGTTGCGACAGCAGGATTGGCAGCACGCAGCGGG
65 ATTCCCAATCTAAGATCAAACT-GGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGCGGG
* ** * *
16482893 GACCGGGTTGATCCCCGACTTGTGTATTCTGCCCCTCCGACCGGCTGAGCGGCCAT-AT-TCTCG
129 GACCGGGTCGATCCCCGACTTACGCATTCTGCCCCTCCGACCGGCTGA-CGGCC-TCATGCCT-G
* * * * *
16482956 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTT
191 CTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGATCGAGGGTA
* * * * * * ** *
16483021 GTCGCAGCGGGACCTACAGCATGCAGAA-GGGCATCGGGTCGATCCCCGGCTTGTGCATTATGCC
256 GTCGCAGCGGGACCGACACCACGCA-AAGGGGCACCGGGCCGATCCCCGACTTACGCATTATACC
* *** *
16483085 TTTCCGGGTGGCTCAGCGTCCGC
320 TCTCCGGCCAGCTCAGCGCCCGC
* * *
16483108 ACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
16483160 ATCAGATCGG
Statistics
Matches: 326, Mismatches: 62, Indels: 13
0.81 0.15 0.03
Matches are distributed among these distances:
341 2 0.01
342 235 0.72
343 87 0.27
344 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (342 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTCACGGAGTTCA
TTCCCAATCTAAGATCAAACTGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGCGGGGA
CCGGGTCGATCCCCGACTTACGCATTCTGCCCCTCCGACCGGCTGACGGCCTCATGCCTGCTTCA
TGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAGCCCCAGCCAGATCGAGGGTAGTCGC
AGCGGGACCGACACCACGCAAAGGGGCACCGGGCCGATCCCCGACTTACGCATTATACCTCTCCG
GCCAGCTCAGCGCCCGC
Found at i:16483296 original size:158 final size:157
Alignment explanation
Indices: 16482817--16483307 Score: 429
Period size: 159 Copynumber: 3.1 Consensus size: 157
16482807 CCCAGTCTAA
* * *
16482817 GCATATGGAGTTCATTCCCAGTCTACGATC-GAATCGGACCGA-GGTTGCGACAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTTGCGACAGCAGGATTGAC
* * * ** * * * *
16482880 AGCACGCAGCGGGGACCGGGTTGATCCCCGACTTGTGTATTCTGCCCCTCCGACCGGCTGAGCGG
65 AGCAAGCAGAGGGGATC-GGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGC
** **
16482945 CCATATTCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * *
16482974 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTCG-CAGCGGGACCT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTG-CGACAGCAGGA-TT
* * * * * * *** *
16483036 -ACAGCATGCAGAAGGGCATCGGGTCGATCCCCGGCTTGTGCATTATGCCTTTCCGGGTGGCTCA
62 GACAGCAAGCAG-AGGGGATC-GGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTAA
* * * * *
16483100 GCGTCCGCACGCTTGTTTCGTGGGTTGACTTAT
125 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
16483133 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAGCGAGGGTTGCGACAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATTGACA
* * * ** *
16483198 GCAAGTAGGGGGGATCGAACC-AGTCCCCGACTTGCACATTCTGCCTCTCCGACCGACTAAGCGC
66 GCAAGCAGAGGGGATCG-GCCGA-TCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGC
16483262 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
16483291 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
16483308 AATGTCTAAG
Statistics
Matches: 261, Mismatches: 60, Indels: 25
0.75 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 31 0.12
158 106 0.41
159 118 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATTGACA
GCAAGCAGAGGGGATCGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16483686 original size:172 final size:171
Alignment explanation
Indices: 16483324--16483689 Score: 404
Period size: 171 Copynumber: 2.1 Consensus size: 171
16483314 TAAGGATAAA
* *
16483324 GAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTGTGACAGCAAAACCAGCAGCAGGAT
1 GAGTTCATTCCCAGTCTAAGATCCAACCAAACCGAGGGTTATGACAGCAAAACCAGCAGCAGGAT
* *
16483389 CGGCAGCACACAGGGGGAGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCTGCTG
66 CGGCAGCACACAGGGGGAGACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGCTG
* * * *
16483454 AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGACAGACG
131 AGCGCCCGCACGCTCATTTCATGGGTTGACATAGACAGACG
* * * *
16483495 GAGTTCATT-CCATGTCTAAG-TCCCAGTCC-AACTGAGGGTTATGGCAGCAAGACC-GTCAGC-
1 GAGTTCATTCCCA-GTCTAAGAT-CCA-ACCAAACCGAGGGTTATGACAGCAAAACCAG-CAGCA
* * ** * *
16483555 GAGATCGGTAGCACTCAGAGGGG-GACCAGGTTGATCCCC-GACTTGCGCATTATGCCTCTCTGG
62 G-GATCGGCAGCACACAG-GGGGAGACCAGGCCGATCCCCAG-CTTGCGCATTATACCTCTCCGG
* * * * *
16483618 TCGGACTGAGCGCTCGCATGCTCATTTCATGGGTTGACATAGGCATACG
124 CCGG-CTGAGCGCCCGCACGCTCATTTCATGGGTTGACATAGACAGACG
16483667 GAGTTCATTCCCAGTCTAAGATC
1 GAGTTCATTCCCAGTCTAAGATC
16483690 GGTCTGGACC
Statistics
Matches: 162, Mismatches: 23, Indels: 19
0.79 0.11 0.09
Matches are distributed among these distances:
170 7 0.04
171 92 0.57
172 59 0.36
173 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (171 bp):
GAGTTCATTCCCAGTCTAAGATCCAACCAAACCGAGGGTTATGACAGCAAAACCAGCAGCAGGAT
CGGCAGCACACAGGGGGAGACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGGCCGGCTG
AGCGCCCGCACGCTCATTTCATGGGTTGACATAGACAGACG
Found at i:16484785 original size:25 final size:26
Alignment explanation
Indices: 16484750--16484801 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16484740 GTTGGCTTAG
* *
16484750 GCATACTGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16484775 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16484801 G
1 G
16484802 AGTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16485506 original size:26 final size:26
Alignment explanation
Indices: 16485470--16485522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16485460 GTTGAATTAG
*
16485470 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16485496 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16485522 G
1 G
16485523 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16486150 original size:184 final size:184
Alignment explanation
Indices: 16485834--16486231 Score: 539
Period size: 184 Copynumber: 2.2 Consensus size: 184
16485824 CTAAGCGTAT
* * *
16485834 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACAGTAGCAAGACTAGCAGCAGGA
1 GGAGTTCATCCCCAGTCTAAGATCAGATCGGACCAAGGGTTACAGTAGCAAGACTAGCAGCAAGA
** * * * *
16485899 TCGGTAGCATGCAAGGGTGGATTGAGTCGATCCCAAGCTTTCACATTCTGCCTCTCCAGCTGGCC
66 TCGACAGCATGCAAGGGTGGATCGAGCCGATCCCAAGCTTTCACATTCTACCTCTCCAGCCGGCC
* *
16485964 TCTTCGGCCTACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTCGGCATAC
131 TCTTCGACCTACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* **
16486018 GGAGTTCATCCCCAGTCTAAGATCAGATCGGATCAAGGGTTGTAGTAGCAAGACTAGCAGCAAGA
1 GGAGTTCATCCCCAGTCTAAGATCAGATCGGACCAAGGGTTACAGTAGCAAGACTAGCAGCAAGA
* * * * *
16486083 TTGACAGCATGTAGGGGTGGATCGAGCCGATCCC-TGACTTTCGCATTCTACCTCTCC-GACCGG
66 TCGACAGCATGCAAGGGTGGATCGAGCCGATCCCAAG-CTTTCACATTCTACCTCTCCAG-CCGG
* * **
16486146 CCTCTTCGACCTATTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
129 CCTCTTCGACCTACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
16486202 GGAGCTCATCCCCAGTGTAAGATCAGATCG
1 GGAGTTCATCCCCAGTCTAAGATCAGATCG
16486232 AGCTGAGGGT
Statistics
Matches: 187, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
183 2 0.01
184 185 0.99
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (184 bp):
GGAGTTCATCCCCAGTCTAAGATCAGATCGGACCAAGGGTTACAGTAGCAAGACTAGCAGCAAGA
TCGACAGCATGCAAGGGTGGATCGAGCCGATCCCAAGCTTTCACATTCTACCTCTCCAGCCGGCC
TCTTCGACCTACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
Found at i:16486405 original size:26 final size:26
Alignment explanation
Indices: 16486355--16486407 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16486345 GTTGACTTAG
*
16486355 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16486381 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16486407 G
1 G
16486408 ATAGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16487297 original size:161 final size:160
Alignment explanation
Indices: 16486933--16487425 Score: 411
Period size: 161 Copynumber: 3.1 Consensus size: 160
16486923 CCCAGTCTAA
* * * * * * * * * *
16486933 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGCAGGATCGATA
1 GCATACGGAGTTCACTCCCAGTCAAAGATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGACA
* * ** * ** *
16486998 GCACGCAGGGGGACC-AGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGCC
66 GCACGCAGGGGGACCGA-GCCGATCCTCGGCTTGCACATTCTGCCTCTTCGCCCGGCTGAGCGCC
* *
16487062 CGCAC-AC-C-CGTTTCATGGGTTGGCTTAG
130 CGCACGACGCTCATTTCATGGGTTGACTTAG
* * * ** * * *
16487090 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCTAG-TCGGA-TCGAGGGTTGTGGTAG-TGAGA-C
1 GCATACGGAGTTCACTCCCA-GTCAAAGATC-AGACCAGACT-GAGGGTTGTGGCAGCTG-GATC
** * * * *
16487150 TGGTAGCACGCAGAGGGAGATCGGGCTGATCCTCGGCTTGCATATTCTGCCT-TTC-CCAACGGG
62 -GACAGCACGCAG-GGG-GACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTTCGCC--C-GG
* *
16487213 CCTGAGCG-CC-CAC-ACGCTCGTTTCGTGGGTTGACTTAG
121 -CTGAGCGCCCGCACGACGCTCATTTCATGGGTTGACTTAG
16487251 GCATACGGAGTTCACTCCCAGTCAAAGATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGACA
1 GCATACGGAGTTCACTCCCAGTCAAAGATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGACA
* *
16487316 GCACGTAGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCC
66 GCACGCAGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTTCGCCCGGCTGAGCGCCC
* *
16487381 GCACGGATGCTCATTTCATGGGTTGGCTTAG
131 GCAC-GACGCTCATTTCATGGGTTGACTTAG
16487412 GCATACGGAGTTCA
1 GCATACGGAGTTCA
16487426 TTCCTTATCT
Statistics
Matches: 267, Mismatches: 44, Indels: 46
0.75 0.12 0.13
Matches are distributed among these distances:
156 6 0.02
157 58 0.22
158 10 0.04
159 65 0.24
160 13 0.05
161 107 0.40
162 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCACTCCCAGTCAAAGATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGACA
GCACGCAGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTTCGCCCGGCTGAGCGCCC
GCACGACGCTCATTTCATGGGTTGACTTAG
Found at i:16487462 original size:26 final size:26
Alignment explanation
Indices: 16487412--16487464 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16487402 GTTGGCTTAG
*
16487412 GCATACGGAGTTCATTCCTTATCTAA
1 GCATACGGAGTTCATTCCTCATCTAA
16487438 GCATACGGAGTTCATT-CTCAGTCTAA
1 GCATACGGAGTTCATTCCTCA-TCTAA
16487464 G
1 G
16487465 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTCATCTAA
Found at i:16487829 original size:26 final size:26
Alignment explanation
Indices: 16487793--16487843 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16487783 GTTGACTTAG
*
16487793 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
* *
16487819 GCATTCAGAGTTCATTCCAAGTCTA
1 GCATACAGAGTTCATCCCAAGTCTA
16487844 GGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:16488298 original size:159 final size:157
Alignment explanation
Indices: 16487958--16488479 Score: 493
Period size: 158 Copynumber: 3.3 Consensus size: 157
16487948 CCGCACGCCT
* * * * **
16487958 GTTTTGTGGGTTGGCTTAGGCCTAGGGAGTTCACTCCATGTCTAAGCCCCAGCCTAACC-AAGGG
1 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAA-GG
* * * * * * * *
16488022 TTGTGGCAGCTGGACCAGCAGCA-AAAAAGAGGGATCGGGCCGATCCCCGACTTACGCATTATGC
65 TTGTGGCAGC-GGATCGGCAGCACGAAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGC
* * *
16488086 CTCTTCGGCTTGCTCAGCGCCCGCATGCCC
129 CTCTTCGGC-GGCTCAGCGCCCGAATGCTC
*
16488116 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGACGGT
1 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGT
** * * *
16488181 TGTGGCAGCGGCATCGGTGGCACGCAGAGGGGGACCGGGTCGATCCCCGGC-TAGTGCATTATAC
66 TGTGGCAGCGG-ATCGGCAGCACGAAGAGGGGGACCGGGTCGATCCCCGGCTTA-CGCATTATGC
*
16488245 CTCTTCGGTCGGCTCAGAGCCCGAATGCTC
129 CTCTTCGG-CGGCTCAGCGCCCGAATGCTC
* * * *** *
16488275 GTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCT-AGAATCA-TACCGGACTGAA
1 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGT--CGGACCGAA
* * * * * *
16488337 GGTTGTGGCAGTAGGATCGACAGCACGTAG-GGGGGACTGGGTCGATCCCCCGCTTACGCATTCT
63 GGTTGTGGCAG-CGGATCGGCAGCACGAAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTAT
* * * *
16488401 GCCTCTCCGACCGGCTGAGCGCCCGCAA-ACTC
127 GCCTCTTCG-GCGGCTCAGCGCCCG-AATGCTC
* *
16488433 GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTAAGC
1 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16488480 ATATGGAGTT
Statistics
Matches: 298, Mismatches: 52, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
157 5 0.02
158 162 0.54
159 125 0.42
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGT
TGTGGCAGCGGATCGGCAGCACGAAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCT
CTTCGGCGGCTCAGCGCCCGAATGCTC
Found at i:16488501 original size:26 final size:26
Alignment explanation
Indices: 16488452--16488504 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16488442 GTTGGCTTAG
*
16488452 GCATATGGAGTTCATTCTATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
16488478 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATATGGAGTTCATT-CCATGTCTAA
16488504 G
1 G
16488505 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:16489372 original size:26 final size:26
Alignment explanation
Indices: 16489336--16489388 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16489326 GTTGGCTTAG
16489336 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16489362 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16489388 G
1 G
16489389 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16489751 original size:26 final size:26
Alignment explanation
Indices: 16489715--16489765 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16489705 GTTGACTTAG
*
16489715 GCATATAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16489741 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
16489766 GGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16490032 original size:159 final size:158
Alignment explanation
Indices: 16489836--16490404 Score: 601
Period size: 159 Copynumber: 3.6 Consensus size: 158
16489826 CCGATCCCCA
* * * *
16489836 GCTTGCGCATT-TCACCTCTTCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAG
1 GCTTGCGCATTAT-GCCTCTTCGGCCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAG
* * *
16489900 GCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGACTGAGGGTTGTGGCAGCTGGACCAGCA
65 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACC-GCA
*
16489965 GCATGCAGAGGGGGATCGGGCCGATCCTTG
129 GCATGCAGAGGGGGATCGGGTCGATCCTTG
* * ** ** * *
16489995 GTTTGTGCATTATGCCTCTTCGGCTTGCTCAGTGCCCGCAAGCCCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGG
* * * *
16490060 CATAGGGAGTTCATTCCATGTCTAAGCCCCACCCGGA-TCGAGGGTTGTGGCAGCCGGACTGGCA
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACT-GAGGGTTGTGGCAGCAGGAC-CGCA
* * * * *
16490124 GCACGTATAGGGGGATCGGGTCAATCCCTG
129 GCATGCAGAGGGGGATCGGGTCGATCCTTG
* * * * *
16490154 GCTTACGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTATG
1 GCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGG
* * ** * * * * *
16490219 CATACAGAGTTCATTCCCA-ATCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
66 CATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCG-CA
* **
16490283 GCATGCAG-GGAGGGACCGGGTCGATCCTCA
129 GCATGCAGAGG-GGGATCGGGTCGATCCTTG
* * * *
16490313 GCTTGCACATTCTGCCTC-TCTGGCCGGTTGAGCACCCGCACG-CTCGTTTCGTGGGTTGGCTTA
1 GCTTGCGCATTATGCCTCTTC-GGCCGGCTCAGCACCCGCACGCCT-GTTTCGTGGGTTGGCTTA
16490376 GGCATACGGAGTTCATTCCATGTCTAAGC
64 GGCATACGGAGTTCATTCCATGTCTAAGC
16490405 ATATGGAGTT
Statistics
Matches: 336, Mismatches: 64, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
158 10 0.03
159 322 0.96
160 4 0.01
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
GCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCGCAGC
ATGCAGAGGGGGATCGGGTCGATCCTTG
Found at i:16490413 original size:26 final size:26
Alignment explanation
Indices: 16490377--16490429 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16490367 GTTGGCTTAG
16490377 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16490403 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16490429 G
1 G
16490430 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16491617 original size:26 final size:26
Alignment explanation
Indices: 16491587--16491639 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16491577 GTTGGCTTAG
16491587 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16491613 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16491639 G
1 G
16491640 ATTGGGCCGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16492270 original size:159 final size:159
Alignment explanation
Indices: 16491857--16493681 Score: 1090
Period size: 158 Copynumber: 11.1 Consensus size: 159
16491847 CAGCAAGACC
* * * * *
16491857 GGTAGCTGGATCGACAGCACGCAGAGGGGGATCGGACTGATCCCCGACTTGTGCATTATGCCTCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
* * * * * *
16491922 CC-GACCGACTGAGCGCCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
66 CCAG-TCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCC
** * * * *
16491986 A-GTCTAAG-ATCGGACTGGACCAAGGGTTGC
129 ATGTCTAAGCCCCAG-CCGGACCGAGGGTTGT
* * * * * * * *
16492016 GGTAGTAGGATTGACCGCACGCAG-GGGGGATCGAGCTGATCCTCGGCTTGCGCATTCTACCTCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
** * * * * * * *
16492080 CTGGTCGGCTGAGTGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
66 CCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT
* *
16492145 GTCTATGCCCCAGCCGAACCGAGGGTTGT
131 GTCTAAGCCCCAGCCGGACCGAGGGTTGT
* ** *
16492174 GGCAGTGGGACCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
* * * *
16492239 TCAGTCGGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA
66 CCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCA
** * * ** * *
16492304 -GTCTAAG-ATCGGATCAAACCAAGGGTTGC
130 TGTCTAAGCCCCAG-CCGGACCGAGGGTTGT
** * * * * * *
16492333 GGTAGCAAAATTGACAGCACACAGGGGGGGACCTGG-TCGATCCCCGGCTGGCGCATTCTGCCTC
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTC
* *
16492397 TCC-GATCGG-TCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATGC-GAGTTCATTC
65 TCCAG-TCGGCTC-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
16492459 CATGTCTAAGCCCCAGCCGGACTGAGGGTTGT
128 CATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* * *
16492491 GGTAGCAGGACCGACAGCGGGATCGACAGCATGCAAAGGTGGATCGAGCTGATCCCCGGCTTGTG
1 GGTAGCAGGATCGACAGC---A-C-ACAG-A-G----GG-GGATCGGGCTGATCCCCGGCTTGCG
* * * *
16492556 CATTATGCCTCTCCAGCCGGCCTCTCTGGTTGACTGAGTACCCGCATGCT-GATTTCGTGGGTTC
54 CATTATGCCTCTCCAGTCGG---CTC------A--GCG--CCCGCACGCTCG-TTTCGTGGGTTG
* * *
16492620 ACTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGT
105 ACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* ** ** * * *** * * *
16492675 GGCAGTGGGATCGGTAGCACATAGAGGGGGATTGAATTGATCCTCGGCTTACGCATTATGCCACT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
** * * * * * * *
16492740 CTGGTTGGCTCAACACCCGCATGCTCATTTCATGAGTTGACTTAGGCATAC-GAGTTCATTCC-T
66 CCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT
** * * * *
16492803 AGTCTAAG-ATCAGATCAGACTGAGGGTTGA
131 -GTCTAAGCCCCAG-CCGGACCGAGGGTTGT
* ** * * * *
16492833 GGTAGCAGGATCGATAGCACGTAGA-GGGGATCAGG-TCGGTCCCCGGCTTGTGCATTCTGCCTC
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTC
* * * * * * * *
16492896 TCCTGTCGGCTGAGCACCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCT
65 TCCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA
* *
16492961 TGTCTAAGCCCCAGTCGGACCGAGGGTTAT
130 TGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* * * * *
16492991 GGTAGCAGGACCGACAGCAGGATTGGCAGCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCA
1 GGTAGCA-G---G--ATC--GA----CAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCG
** * * *
16493056 CATTATGCCTCTCCAGTCAACCTCTTCGACCGGCAGAGCGCTCGTAAGCTCGTTTCATGGGTTGA
54 CATTATGCCTCTCCAGT---CGGC-TC-A---GC---GC-C-CGCACGCTCGTTTCGTGGGTTGA
* * ** ** * * * *
16493121 CTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGA
106 CTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC---CCCAG--C---CGGA-CCGAGGGTT-G-
16493185 T
159 T
* * ** * *
16493186 CGGATTG-AGGGTTACGGTAGCACACAG-GGGGGA-CTGGGCTGATCCTCGGCTTGCGCATTCTG
1 -GG-TAGCA-GGAT-CGACAGCACACAGAGGGGGATC-GGGCTGATCCCCGGCTTGCGCATTATG
* * * * * * * * *
16493248 CCTCTCCGGCCGGCTCAGTGCCTGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
61 CCTCTCCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
16493313 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
126 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* ** * * *
16493347 GGCAGTGGGATCGACAGCACATAGAGGGGGATCGGG-TCGATCCTCGGCTTGCGCATTATGCCAC
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTC
* *
16493411 TCCAGTTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCC
65 TCCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC
* ** * *
16493475 A-GCCTAAG-ATCAGACCGGACTGAGGGTTGA
129 ATGTCTAAGCCCCAG-CCGGACCGAGGGTTGT
** * * *
16493505 GGTAGCAGGATCGACAGCACGTAG-GGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
* * * ** * * * *
16493569 CCTGCCGGCTGAGCGCCTACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGACTTCATTCCTT
66 CCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT
*
16493634 GTCTAAGCCCCAGTCGGACCGAGGGTTGT
131 GTCTAAGCCCCAGCCGGACCGAGGGTTGT
* *
16493663 GGTAGCAGGACCGATAGCA
1 GGTAGCAGGATCGACAGCA
16493682 GGATTGGCAG
Statistics
Matches: 1270, Mismatches: 295, Indels: 203
0.72 0.17 0.11
Matches are distributed among these distances:
156 1 0.00
157 159 0.13
158 351 0.28
159 336 0.26
160 6 0.00
161 2 0.00
162 3 0.00
163 10 0.01
164 4 0.00
165 1 0.00
166 2 0.00
167 1 0.00
169 8 0.01
170 42 0.03
171 38 0.03
172 81 0.06
173 3 0.00
174 6 0.00
175 1 0.00
176 1 0.00
177 2 0.00
178 1 0.00
179 7 0.01
180 2 0.00
181 5 0.00
182 4 0.00
183 29 0.02
184 96 0.08
185 38 0.03
186 9 0.01
187 3 0.00
190 1 0.00
192 3 0.00
193 6 0.00
195 1 0.00
196 5 0.00
197 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GGTAGCAGGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT
CCAGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAGCCGGACCGAGGGTTGT
Found at i:16492455 original size:317 final size:317
Alignment explanation
Indices: 16491868--16492508 Score: 846
Period size: 317 Copynumber: 2.0 Consensus size: 317
16491858 GTAGCTGGAT
* * * *
16491868 CGACAGCACGCAGAGGGGGATCGGACTGATCCCCGACTTGTGCATTATGCCTCTCCGACCGACTG
1 CGACAGCACACAGAGGGGGATCGGACTGATCCCCGACTTGCGCATTATGCCTCTCAGACCGACTC
* *
16491933 AGCGCCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCG
66 AACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCG
** * ** * * * *
16491998 GACTGGACCAAGGGTTGCGGTAGTAGGATTGACCGCACGCAGGGGGGATCGAGCTGATCCTCGGC
131 GACTAAACCAAGGGTTGCGGTAGCAAAATTGACAGCACACAGGGGGGACCGAGCTGATCCCCGGC
* * * * *
16492063 TTGCGCATTCTACCTCTCTGGTCGGCTGAGTGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCA
196 TGGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
* * **
16492128 TAGGGAGTTCATTCCATGTCTATGCCCCAGCCGAACCGAGGGTTGTGGCAGTGGGAC
261 TAGCGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGAC
* * * *
16492185 CGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCAG-TCGGCT
1 CGACAGCACACAGAGGGGGATCGGACTGATCCCCGACTTGCGCATTATGCCTC-TCAGACCGACT
* *
16492249 CAACGCCC-ACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT
65 CAACGCCCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGAT
16492313 CGGA-TCAAACCAAGGGTTGCGGTAGCAAAATTGACAGCACACAGGGGGGGACCTG-G-TCGATC
129 CGGACT-AAACCAAGGGTTGCGGTAGCAAAATTGACAGCACACA-GGGGGGACC-GAGCT-GATC
* * *
16492375 CCCGGCTGGCGCATTCTGCCTCTCCGATCGG-TCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
190 CCCGGCTGGCGCATTCTACCTCTCCGATCGGCT-GAGCGCCCGCACGCCCATTTCGTGGGTTGGC
* * *
16492439 TTAGGCAT-GCGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGCAGGAC
254 TTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGAC
16492502 CGACAGC
1 CGACAGC
16492509 GGGATCGACA
Statistics
Matches: 281, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
316 2 0.01
317 201 0.72
318 77 0.27
319 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (317 bp):
CGACAGCACACAGAGGGGGATCGGACTGATCCCCGACTTGCGCATTATGCCTCTCAGACCGACTC
AACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCG
GACTAAACCAAGGGTTGCGGTAGCAAAATTGACAGCACACAGGGGGGACCGAGCTGATCCCCGGC
TGGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
TAGCGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGAC
Found at i:16492703 original size:501 final size:500
Alignment explanation
Indices: 16492075--16493071 Score: 1300
Period size: 501 Copynumber: 2.0 Consensus size: 500
16492065 GCGCATTCTA
* * **
16492075 CCTCTCTGGTCGGCTGAGTGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCTGGTCGACTGAGTACCCGCATGCCCATTTCGTGGGTTCACTTAGGCATAGGGAGTTCAT
*
16492140 TCCATGTCTATGCCCCAGCCGAACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGA
66 TCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGA
** * * * *
16492205 TCGGGCTGATCCCCGGCTTGCGCATTATGCCTCT-TCAGTCGGCTCAACGCCCACACGCTCGTTT
131 TCGAACTGATCCCCGGCTTACGCATTATGCCACTCT-AGTCGGCTCAACACCCACACGCTCATTT
* * * * *
16492269 CGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCAAGGGTTGCG
195 CATGAGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTGAG
* * *
16492334 GTAGCAAAATTGACAGCACACAGGGGGGGACCTGGTCGATCCCCGGCTGGCGCATTCTGCCTCTC
259 GTAGCAAAATCGACAGCACACA-GAGGGGACCAGGTCGATCCCCGGCTGGCGCATTCTGCCTCTC
* * * *
16492399 C-GATCGG-TCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATGC-GAGTTCATTCCA
323 CTG-TCGGCT-GAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCA
* * * **
16492461 TGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGCATGCA
386 TGTCTAAGCCCCAGCCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATCGACAGCACACA
* * **
16492526 AAGGTGGATCGAGCTGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGG
451 AAGGGGGACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTCCAGCCGG
* ** *
16492576 CCTCTCTGGTTGACTGAGTACCCGCATGCTGATTTCGTGGGTTCACTTTGGCATAGGGAGTTCAT
1 CCTCTCTGGTCGACTGAGTACCCGCATGCCCATTTCGTGGGTTCACTTAGGCATAGGGAGTTCAT
* * * ** *
16492641 TCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTGGGATCGGTAGCACATAGAGGGGGA
66 TCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGA
* * * * * * *
16492706 TTGAATTGATCCTCGGCTTACGCATTATGCCACTCTGGTTGGCTCAACACCCGCATGCTCATTTC
131 TCGAACTGATCCCCGGCTTACGCATTATGCCACTCTAGTCGGCTCAACACCCACACGCTCATTTC
* * **
16492771 ATGAGTTGACTTAGGCATACGAGTTCATTCCTAGTCTAAGATCAGATCAGACTGAGGGTTGAGGT
196 ATGAGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTGAGGT
** * ** * * * *
16492836 AGCAGGATCGATAGCACGTAGAGGGGATCAGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCTG
261 AGCAAAATCGACAGCACACAGAGGGGACCAGGTCGATCCCCGGCTGGCGCATTCTGCCTCTCCTG
* *
16492901 TCGGCTGAGCACCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCTTGTCT
326 TCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCT
* * * *
16492966 AAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATTGGCAGCACACAGAGGG
391 AAGCCCCAGCCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATCGACAGCACACAAAGGG
*
16493031 GGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCAG
456 GGACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTCCAG
16493072 TCAACCTCTT
Statistics
Matches: 423, Mismatches: 69, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
499 78 0.18
500 162 0.38
501 182 0.43
502 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (500 bp):
CCTCTCTGGTCGACTGAGTACCCGCATGCCCATTTCGTGGGTTCACTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGA
TCGAACTGATCCCCGGCTTACGCATTATGCCACTCTAGTCGGCTCAACACCCACACGCTCATTTC
ATGAGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGTTGAGGT
AGCAAAATCGACAGCACACAGAGGGGACCAGGTCGATCCCCGGCTGGCGCATTCTGCCTCTCCTG
TCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCT
AAGCCCCAGCCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATCGACAGCACACAAAGGG
GGACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTCCAGCCGG
Found at i:16493138 original size:500 final size:501
Alignment explanation
Indices: 16492106--16493153 Score: 1257
Period size: 500 Copynumber: 2.1 Consensus size: 501
16492096 CCGCATGCCC
* *
16492106 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGCCGAACCGAGGGT
1 ATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGT
** *
16492171 TGTGGCAGTGGGACCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCC
66 TGTGGCAGTGGGACCGACAGCACACAGAGGGGGATCGAACTGATCCCCGGCTTACGCATTATGCC
* * * * * *
16492236 TCTTCAGTCGGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTC
131 ACTTCAGTCGGCTCAACACCCACACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATTC
* * * *
16492301 CCAGTCTAAGATCGGATCAAACCAAGGGTTGCGGTAGCAAAATTGACAGCACACAGGGGGGGACC
196 CCAGTCTAAGATCAGATCAAACCAAGGGTTGAGGTAGCAAAATCGACAGCACACAGGAGGGGACC
* * *
16492366 TGGTCGATCCCCGGCTGGCGCATTCTGCCTCTCCGATCGGTCGAGCGCCCGCACGCTCGTTTCGT
261 AGGTCGATCCCCGGCTGGCGCATTCTGCCTCTCCGATCGGTCGAGCACCCGCACGCTCATTTCGT
* * * *
16492431 GGGTTGGCTTAGGCATGCGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGTAG
326 GGGTTGGCTTAGGCATACGACTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGTAG
* ** * * **
16492496 CAGGACCGACAGCGGGATCGACAGCATGCAAAGGTGGATCGAGCTGATCCCCGGCTTGTGCATTA
391 CAGGACCGACAGCAGGATCGACAGCACACAAAGGGGGACCGAGCTGATCCCCGGCTTGCACATTA
** *** * * *
16492561 TGCCTCTCCAGCCGGCCTCTCTGGTTGACTGAGTACCCGCATGCTG
456 TGCCTCTCCAGCCAACCTCTCTGACCGACAGAGCACCCGCAAGCTG
* * * *
16492607 ATTTCGTGGGTTCACTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGT
1 ATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGT
* ** * * * *
16492672 TGTGGCAGTGGGATCGGTAGCACATAGAGGGGGATTGAATTGATCCTCGGCTTACGCATTATGCC
66 TGTGGCAGTGGGACCGACAGCACACAGAGGGGGATCGAACTGATCCCCGGCTTACGCATTATGCC
* * * *
16492737 AC-TCTGGTTGGCTCAACACCCGCATGCTCATTTCATGAGTTGACTTAGGCATAC-GAGTTCATT
131 ACTTC-AGTCGGCTCAACACCCACACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATT
* * ** ** * ** *
16492800 CCTAGTCTAAGATCAGATCAGACTGAGGGTTGAGGTAGCAGGATCGATAGCACGTA-GAGGGGAT
195 CCCAGTCTAAGATCAGATCAAACCAAGGGTTGAGGTAGCAAAATCGACAGCACACAGGAGGGGAC
* * * *
16492864 CAGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTCCTG-TCGG-CTGAGCACCTGCACGCTCATTT
260 CAGGTCGATCCCCGGCTGGCGCATTCTGCCTCTCC-GATCGGTC-GAGCACCCGCACGCTCATTT
* *
16492927 CGTGGGTTGGCTTAGGCATACGGACTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGGTTATG
323 CGTGGGTTGGCTTAGGCATAC-GACTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATG
* * * *
16492992 GTAGCAGGACCGACAGCAGGATTGGCAGCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCAC
387 GTAGCAGGACCGACAGCAGGATCGACAGCACACAAAGGGGGACCGAGCTGATCCCCGGCTTGCAC
* * * * *
16493057 ATTATGCCTCTCCAGTCAACCTCT-TCGACCGGCAGAGCGCTCGTAAGCTCG
452 ATTATGCCTCTCCAGCCAACCTCTCT-GACCGACAGAGCACCCGCAAGCT-G
* * *
16493108 -TTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGC
1 ATTTCGTGGGTTGACTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
16493154 ATACGAAGTT
Statistics
Matches: 458, Mismatches: 82, Indels: 15
0.83 0.15 0.03
Matches are distributed among these distances:
498 1 0.00
499 79 0.17
500 219 0.48
501 159 0.35
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (501 bp):
ATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGT
TGTGGCAGTGGGACCGACAGCACACAGAGGGGGATCGAACTGATCCCCGGCTTACGCATTATGCC
ACTTCAGTCGGCTCAACACCCACACGCTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGATCAAACCAAGGGTTGAGGTAGCAAAATCGACAGCACACAGGAGGGGACC
AGGTCGATCCCCGGCTGGCGCATTCTGCCTCTCCGATCGGTCGAGCACCCGCACGCTCATTTCGT
GGGTTGGCTTAGGCATACGACTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGTAG
CAGGACCGACAGCAGGATCGACAGCACACAAAGGGGGACCGAGCTGATCCCCGGCTTGCACATTA
TGCCTCTCCAGCCAACCTCTCTGACCGACAGAGCACCCGCAAGCTG
Found at i:16493469 original size:672 final size:672
Alignment explanation
Indices: 16492625--16493852 Score: 2019
Period size: 672 Copynumber: 1.8 Consensus size: 672
16492615 GGTTCACTTT
* **
16492625 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTGGGATCGGT
1 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGAC
* * **
16492690 AGCACATAGAGGGGGATTGAATTGATCCTCGGCTTACGCATTATGCCACTCTGGTTGGCTCAACA
66 AGCACATAGAGGGGGATCGAATCGATCCTCGGCTTACGCATTATGCCACTCCAGTTGGCTCAACA
* * * *
16492755 CCCGCATGCTCATTTCATGAGTTGACTTAGGCATACGAGTTCATTCCTAGTCTAAGATCAGATCA
131 CCCGCACGCTCATTTCATGAGTTGACTTAGGCATACGAGTTCATTCCCAGCCTAAGATCAGACCA
* * * *
16492820 GACTGAGGGTTGAGGTAGCAGGATCGATAGCACGTAGAGGGGATCAGGTCGGTCCCCGGCTTGTG
196 GACTGAGGGTTGAGGTAGCAGGATCGACAGCACGTAGAGGGGATCAGGCCGATCCCCGGCTTGCG
* *
16492885 CATTCTGCCTCTCCTGTCGGCTGAGCACCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
261 CATTCTGCCTCTCCTGCCGGCTGAGCACCTACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
16492950 ACTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATT
326 ACTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATT
16493015 GGCAGCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCC-AGTCAACCT
391 GGCAGCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCGA-TCAACCT
* * ** *
16493079 CTTCGACCGGCAGAGCGCTCGTAAGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCC
455 CTTCAACCGGCAGAGCGCCCGTAAGCTCGTTTCACAGGTTGACTTAGGCATACGGAGTTCAT-CC
16493144 CA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTACGGTAGCA
519 CATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTACGGTAGCA
16493208 CACAGGGGGGACTGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGTGCCTGT
584 CACAGGGGGGACTGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGTGCCTGT
16493273 ACGCCCGTTTCATGGGTTGGCTTA
649 ACGCCCGTTTCATGGGTTGGCTTA
16493297 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGAC
1 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGAC
** * *
16493362 AGCACATAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCACTCCAGTTGGCTCAGCA
66 AGCACATAGAGGGGGATCGAATCGATCCTCGGCTTACGCATTATGCCACTCCAGTTGGCTCAACA
* * * *
16493427 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGCCTAAGATCAGACCG
131 CCCGCACGCTCATTTCATGAGTTGACTTAGGCATACGAGTTCATTCCCAGCCTAAGATCAGACCA
*
16493492 GACTGAGGGTTGAGGTAGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCGGCTTGCG
196 GACTGAGGGTTGAGGTAGCAGGATCGACAGCACGTAGAGGGGATCAGGCCGATCCCCGGCTTGCG
* * *
16493557 CATTCTGCCTCTCCTGCCGGCTGAGCGCCTACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGG
261 CATTCTGCCTCTCCTGCCGGCTGAGCACCTACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* *
16493622 ACTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGATAGCAGGATT
326 ACTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATT
* * *
16493687 GGCAGCACACAGAGGGGGACCGGGCTGATCCCTGGCTTGCACATTATGCCTCTTCGATCGACCTC
391 GGCAGCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCGATCAACCTC
* * * * *
16493752 TTCAACTGGCTGAGTGCCCGTAAGCTCGTTTCACAGGTTGGCTTAGGCATACGGAGTTCATTCCA
456 TTCAACCGGCAGAGCGCCCGTAAGCTCGTTTCACAGGTTGACTTAGGCATACGGAGTTCATCCCA
*
16493817 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
521 TGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
16493853 CAGACTGGAC
Statistics
Matches: 509, Mismatches: 45, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
671 3 0.01
672 505 0.99
673 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (672 bp):
GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGATCGAC
AGCACATAGAGGGGGATCGAATCGATCCTCGGCTTACGCATTATGCCACTCCAGTTGGCTCAACA
CCCGCACGCTCATTTCATGAGTTGACTTAGGCATACGAGTTCATTCCCAGCCTAAGATCAGACCA
GACTGAGGGTTGAGGTAGCAGGATCGACAGCACGTAGAGGGGATCAGGCCGATCCCCGGCTTGCG
CATTCTGCCTCTCCTGCCGGCTGAGCACCTACACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
ACTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGGACCGACAGCAGGATT
GGCAGCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCGATCAACCTC
TTCAACCGGCAGAGCGCCCGTAAGCTCGTTTCACAGGTTGACTTAGGCATACGGAGTTCATCCCA
TGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTACGGTAGCACA
CAGGGGGGACTGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGTGCCTGTAC
GCCCGTTTCATGGGTTGGCTTA
Found at i:16493827 original size:26 final size:26
Alignment explanation
Indices: 16493798--16493850 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16493788 GTTGGCTTAG
16493798 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16493824 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16493850 G
1 G
16493851 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16494025 original size:26 final size:26
Alignment explanation
Indices: 16493995--16494047 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16493985 GTTGACTTAG
*
16493995 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16494021 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16494047 G
1 G
16494048 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16494367 original size:26 final size:26
Alignment explanation
Indices: 16494338--16494390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16494328 GTTGACTTAG
16494338 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16494364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16494390 G
1 G
16494391 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16495139 original size:158 final size:158
Alignment explanation
Indices: 16494688--16495670 Score: 773
Period size: 158 Copynumber: 6.3 Consensus size: 158
16494678 AACGGGCCGA
* * *
16494688 ACGCTCGTTTCGTGGGTTGATTTAGGCATAC-AGAGTTCATTCCCA-GTCTAAGATCGGACCAGA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATT-CCATGTCTAAGATCAGACCGGA
* * * *
16494751 CCGAGGGTTTTGGCAGTAGGATCGACAGCACGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGC
64 CCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGCGC
* * *
16494815 ATTCTGCCTCTCCGACTGGCTGAGCACCCGC
129 ATTATGCCTCTTCGAC-GGCTGAGCGCCCGC
* * * * **
16494846 ACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCAG--CGGAC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGAC
* * *
16494909 CAAGGGTTGTGGCAGCA-GA-CCACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCA
65 CAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCA
* *
16494972 TTATGCCTCTTCGTCGGCTCAGCGCCCGC
130 TTATGCCTCTTCGACGGCTGAGCGCCCGC
* * *
16495001 ACGCTTGTTTCGTGGGTTGACTTATGCAAACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGAC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGAC
** * * *
16495065 CAAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCAGACTTGCGCA
65 CAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCA
* * * * *
16495130 TTTTACCTCTTCGGCCTGCTGAGCGCCTGC
130 TTATGCCTCTTC-GACGGCTGAGCGCCCGC
* * * ** * * *
16495160 ATGCTCGTTTCGTGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAGCCCAG-TCAGACT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACC
* ** * * * *
16495224 GAGGGTTGTGGCAGTGGGATCGACAGAATGTA-GGAGGGATCGGG-CTGATCCCCGGCTTGCGCA
66 AAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTC-GATCCCCGGCTTGCGCA
* * * *
16495287 TTCTGCCTCTCCGACCAGCTGAGAGCCCGC
130 TTATGCCTCTTCGA-CGGCTGAGCGCCCGC
** * * * * ** * *
16495317 GTGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGAT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGAC
* * * * ** * * * *
16495381 CGAGGGTTGTGGCAACGGGATTGGTAGAACGTA-AGGGGGATCAGG-CTGATCCCC-GCTTGGCG
65 CAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTC-GATCCCCGGCTT-GCG
* * * *
16495443 CATTCTGCCTCTTCGACCAGCTGAGTGCCCGG
128 CATTATGCCTCTTCGA-CGGCTGAGCGCCCGC
** ** * * * ** * *
16495475 GTGC-CCCTTCGT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAG-TCAGACC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACC
* * ** * * * * * * *
16495537 GAGGGTTGTGGCAGC-GAGACCGGTAGCACGCAGAGGGGGACCGAGCCGATCCTCGACTTGTGCA
66 AAGGGTTGTGGCAGCAG-GATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCA
*
16495601 TTATGCCTCTTCGACCGG-TACAGCGCCCGC
130 TTATGCCTCTTCGA-CGGCT-GAGCGCCCGC
* *
16495631 ACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCAT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
16495671 CCCCAGTCTA
Statistics
Matches: 682, Mismatches: 121, Indels: 44
0.81 0.14 0.05
Matches are distributed among these distances:
154 4 0.01
155 100 0.15
156 148 0.22
157 136 0.20
158 234 0.34
159 60 0.09
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACC
AAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCAT
TATGCCTCTTCGACGGCTGAGCGCCCGC
Found at i:16495612 original size:471 final size:470
Alignment explanation
Indices: 16494688--16495683 Score: 1089
Period size: 471 Copynumber: 2.1 Consensus size: 470
16494678 AACGGGCCGA
* ** *
16494688 ACGCTCGTTTCGTGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACA-AGTTCATT-CCAGTCTAAGCCCAGACCAGACC
* * *
16494753 GAGGGTTTTGGCAGTAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
64 GAGGGTTGTGGCAGTAGGATCGACAGAACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATT
**
16494818 CTGCCTCTCCGACTGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTT
129 CTGCCTCTCCGACCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTT
* * *
16494883 CATTCCATGTCTCAGCCCCAGCGGACCAAGGGTTGTGGCAGCAGACCACAGCACGCAGAGGGGGA
194 CATTCCATGTCTAAGCCCCAGCGGACCAAGGGTTGTGGCAACAGACCACAGAACGCAGAGGGGGA
* * * ***
16494948 TCGGGTCGATCCCCGGCTTACGCATTATGCCTCTTCGTCGGCTCAGCGCCCGCACGCTTGTTTCG
259 TCGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCGCCAGCTCAGCGCCCGCACGCTCCCTTCG
* * * *
16495013 TGGGTTGACTTATGCAAACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGT
324 TGGGTTGACTTAGGCAAACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGGTTGCAGC
* * * * * *
16495078 AGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCAGACTTGCGCATTTTACCTCTTCG
389 AGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCAGACTTGCGCATTATACCTCTTCG
* * *
16495143 GCCTGCT-GAGCGCCTGC
454 ACC-GCTACAGCGCCCGC
* * * *
16495160 ATGCTCGTTTCGTGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTCTAAGCCCAG-TCAGACT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AAGTTCATTCCA-GTCTAAGCCCAGACCAGACC
* * * *
16495224 GAGGGTTGTGGCAGTGGGATCGACAGAATGTAGGAGGGATCGGGCTGATCCCCGGCTTGCGCATT
64 GAGGGTTGTGGCAGTAGGATCGACAGAACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATT
** *
16495289 CTGCCTCTCCGACCAGCTGAG-AGCCCGCGTGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
129 CTGCCTCTCCGACCAGCTGAGCA-CCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGT
* * * **** *
16495353 TCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAACGGGATTGGTAGAACGTA-AGG
193 TCATTCCATGTCTAAGCCCCAG-CGGACCAAGGGTTGTGGCAAC-AGA-CCACAGAACGCAGAGG
* * * * ***
16495417 GGGATCAGGCT-GATCCCC-GCTTGGCGCATTCTGCCTCTTCGACCAGCTGAGTGCCCGGGTGC-
255 GGGATC-GGCTCGATCCCCGGCTT-ACGCATTATGCCTCTTCG-CCAGCTCAGCGCCCGCACGCT
* * * * * * *
16495479 CCCTTCGT-GGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCAG-TCAGACCGAGG
317 CCCTTCGTGGGTTGACTTAGGCAAACGAAGTTCATTCCCA-GTCTAAGACCAGACCAGACCAAGG
** ** *
16495541 GTTGTGGCAGC-GAGACCGGTAGCACGCAGAGGGGGACCGAGCCGATCCTC-GACTTGTGCATTA
381 GTTGCAGCAGCAG-GACCGACAGCACGCAGAGGGGGACCGAGCCGATCC-CAGACTTGCGCATTA
* *
16495604 TGCCTCTTCGACCGGTACAGCGCCCGC
444 TACCTCTTCGACCGCTACAGCGCCCGC
* * *
16495631 ACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AAGTTCAT-TCCAGTCTAAGC
16495684 ATACGAAGTT
Statistics
Matches: 433, Mismatches: 77, Indels: 29
0.80 0.14 0.05
Matches are distributed among these distances:
470 4 0.01
471 264 0.61
472 103 0.24
473 40 0.09
474 22 0.05
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (470 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACAAGTTCATTCCAGTCTAAGCCCAGACCAGACCGA
GGGTTGTGGCAGTAGGATCGACAGAACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCT
GCCTCTCCGACCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAGCGGACCAAGGGTTGTGGCAACAGACCACAGAACGCAGAGGGGGATC
GGCTCGATCCCCGGCTTACGCATTATGCCTCTTCGCCAGCTCAGCGCCCGCACGCTCCCTTCGTG
GGTTGACTTAGGCAAACGAAGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGGTTGCAGCAG
CAGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCAGACTTGCGCATTATACCTCTTCGAC
CGCTACAGCGCCCGC
Found at i:16495693 original size:26 final size:26
Alignment explanation
Indices: 16495656--16495708 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16495646 GTTGACTTAG
* *
16495656 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
16495682 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16495708 G
1 G
16495709 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16495816 original size:184 final size:185
Alignment explanation
Indices: 16495560--16495895 Score: 471
Period size: 184 Copynumber: 1.8 Consensus size: 185
16495550 GCGAGACCGG
* *
16495560 TAGCACGCAGAGGGGGACCGAGCCGATCCTCGACTTGTGCATTATGCCTCTTCGACCGGTACAGC
1 TAGCACGCAGAGGGGGACCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGTACAGC
* ** *
16495625 GCCCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACG
66 ACCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACG
16495689 AAGTTCATTCCCAATCTAAGATTGGATCAGGCCGAGGGTTGTGGCAATAGGATCGA
130 AAGTTCATTCCCAATCTAAGATTGGATCAGGCCGAGGGTTGTGGCAATAGGATCGA
* * * * **
16495745 TAGCACGCAG-GGGGGACCGGGCCGATACCT-GGCTTGCGCATTCTGCCTCTCCGATCGGTTGAG
1 TAGCACGCAGAGGGGGACCGAGCCGAT-CCTCGACTTGCGCATTATGCCTCTCCGACCGGTACAG
* * *
16495808 CACCCGCACGCTCGTTTCATGGGTTCACTTAGGCGTACGGAGTTCATTCCATGTTTAAGCATACG
65 CACCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACG
* * *
16495873 GAGTTCATTCCTAGTCTAAGATT
130 AAGTTCATTCCCAATCTAAGATT
16495896 TTGAGCCACG
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
183 3 0.02
184 115 0.88
185 13 0.10
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (185 bp):
TAGCACGCAGAGGGGGACCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGTACAGC
ACCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGA
AGTTCATTCCCAATCTAAGATTGGATCAGGCCGAGGGTTGTGGCAATAGGATCGA
Found at i:16495892 original size:26 final size:26
Alignment explanation
Indices: 16495843--16495892 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16495833 CACTTAGGCG
*
16495843 TACGGAGTTCATTCCATGTTTAAGCA
1 TACGGAGTTCATTCCATGTCTAAGCA
16495869 TACGGAGTTCATTCC-TAGTCTAAG
1 TACGGAGTTCATTCCAT-GTCTAAG
16495893 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTCTAAGCA
Found at i:16496581 original size:26 final size:26
Alignment explanation
Indices: 16496552--16496604 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16496542 GTTGACTTAG
16496552 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
16496578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16496604 G
1 G
16496605 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16496887 original size:159 final size:159
Alignment explanation
Indices: 16496578--16497085 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 159
16496568 CCTAGTCTAA
*** * * *
16496578 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGACCAGATTGAGGGTTG-CGGCAGCAGGATCA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCAGACTGAGGGTTGTCGGTAGCAGGATCG
* * * ** * * * ** *
16496640 ACAACACGCA--AAGGGATCGAGCCGCTCTTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAG
64 ACAGCACGCAGGAAGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTCAG
*
16496703 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CG-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **
16496735 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GAACTGAGGGTTGT-GGTAGTGGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAG-ACTGAGGGTTGTCGGTAGCAGGATC-G
* * *
16496797 ACAGCACGCA-GAAGGTGA-CTGGGCCGATCCTCAGCTTGTACATTTTGCCTCTCCGACCGGCTC
64 ACAGCACGCAGGAAGG-GATC-GGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTC
* *
16496860 AGCGCCTGCACGCTCATTTCGTGGGTTGACTTAG
127 AGCGCC-GCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
16496894 GCAAATGGAGTTCATTCCCA-GTCTAAGATCGAATCAGACTGAGGGTTGTCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACTGAGGGTTGTCGGTAGCAGGATCGA
* * * *
16496958 CAGCACGCAGGGAGGGATCGGGTCGGTCCCCGGCTTGCACATTCTGCCTCTCCGACCAGTTGACT
65 CAGCACGCAGGAAGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACC-G--G-CT
* * *
16497023 GC-CCGGACGCACGCTCGTTTCGTGGGTTGGCTTAA
126 -CAGC-GCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16497058 GCATACGGAGTTCATTCCATGTCGAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16497086 ATACGGAGTT
Statistics
Matches: 279, Mismatches: 50, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
156 5 0.02
157 50 0.18
158 8 0.03
159 98 0.35
160 57 0.20
161 7 0.03
163 4 0.01
164 47 0.17
165 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTCGGTAGCAGGATCGAC
AGCACGCAGGAAGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTCAGCG
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16497092 original size:26 final size:26
Alignment explanation
Indices: 16497056--16497110 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
16497046 GGGTTGGCTT
16497056 AAGCATACGGAGTTCATT-CCATGTCG
1 AAGCATACGGAGTTCATTCCCA-GTCG
16497082 AAGCATACGGAGTTCATTCCCAGTCG
1 AAGCATACGGAGTTCATTCCCAGTCG
16497108 AAG
1 AAG
16497111 ATCAGATCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
AAGCATACGGAGTTCATTCCCAGTCG
Found at i:16497455 original size:26 final size:26
Alignment explanation
Indices: 16497425--16497477 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16497415 GTTGACTTAG
* *
16497425 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16497451 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16497477 G
1 G
16497478 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16497777 original size:158 final size:157
Alignment explanation
Indices: 16497451--16497952 Score: 563
Period size: 158 Copynumber: 3.2 Consensus size: 157
16497441 CCCAGTCTAA
* * * * * * *
16497451 GCATACAGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCTGGATCGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGATGGC
* *
16497514 AGCACGCAGGGGGGATCGGGCCAATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGC-CGAGCA
65 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGCTC-AGCA
* *
16497578 CCCGCAGAC-CTGTTTCATGGGTTGGCTTAG
129 CCCGCAG-CTC-GTTTCGTGGGTTGACTTAG
* * * *
16497608 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGA-TGGC
* * **
16497672 AGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTCCGTC-GGCTCAGTG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGCTCAGCA
*
16497736 CCCGCATGCTCGTTTCGTGGGTTGACTTAT
129 CCCGCA-GCTCGTTTCGTGGGTTGACTTAG
* ** * *
16497766 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATTGGACCAAGGGTTGTGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGAT-GG
* * * * *
16497829 CAGCACACAGGGGGGACCGGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGACTGGCTGAGCA
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGCTCAGCA
16497894 CCCGCACGCTCGTTTCGTGGGTT-AGCTTAG
129 CCCGCA-GCTCGTTTCGTGGGTTGA-CTTAG
*
16497924 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
16497953 TACGAAGTTC
Statistics
Matches: 291, Mismatches: 40, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
156 3 0.01
157 88 0.30
158 154 0.53
159 46 0.16
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGTAGCAGGATGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGCTCAGCACC
CGCAGCTCGTTTCGTGGGTTGACTTAG
Found at i:16498973 original size:159 final size:160
Alignment explanation
Indices: 16498672--16499176 Score: 522
Period size: 159 Copynumber: 3.2 Consensus size: 160
16498662 CCCAGTCTAA
* * * * * *
16498672 GCATACGAAGTTCATTTCCA-GTCTAAG-ATC-GCACCGAACTGAGGGTTGTAGCAGCAAGATCG
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAG-ACAGAACCGAGGGTTGTGGCAGCAGGATCG
* * * ** * * * * * *
16498734 ACAGCACGTA-AGAGGGACTGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCTGGTTGAG
64 ATAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGTTGAG
*
16498798 CGCCCGCACG-TCCATTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCT-CATTTCATGGGTTGGCTTAG
* * * * * *
16498830 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ATCGAGGGTTGTGGCAGCGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCGAGGGTTGTGGCAGCAGGATCGAT
** *
16498894 AGCACGCAGAGGGGGACCAGGTTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGCG
66 AGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCG
* *
16498959 CCCGCAAGCTCATTTCATGGGTTGACTTAG
131 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
16498989 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGAACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACAGAACCGAGGGTTGTGGCAGCAGGATCGA
** * * * * * * *
16499052 TAGCACGTTGGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
65 TAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGC
* *
16499117 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
16499148 GCTTACAGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
16499177 TACAGAGTTC
Statistics
Matches: 285, Mismatches: 53, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
157 5 0.02
158 54 0.19
159 220 0.77
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCGAGGGTTGTGGCAGCAGGATCGAT
AGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCG
CCCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:16499181 original size:26 final size:26
Alignment explanation
Indices: 16499151--16499200 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16499141 GGCTTAGGCT
16499151 TACAGAGTTCATT-CCATGTCTAAGCA
1 TACAGAGTTCATTCCCA-GTCTAAGCA
16499177 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
16499201 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCA
Found at i:16499312 original size:184 final size:185
Alignment explanation
Indices: 16498989--16499714 Score: 488
Period size: 184 Copynumber: 4.0 Consensus size: 185
16498979 GTTGACTTAG
* * ** *
16498989 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGCAGCAGCAGGATCGACA
** * * * *
16499054 GCACGTTGGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
66 GCACGTCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCAC
* * *
16499119 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCTTAC-AGAGTTCATTCCATGTCTAA
131 CCACACGCTCGTTACATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAA
* *
16499174 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCAGCAGCATGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * *
16499238 AGGATG-CAGGGGGGACCGAGCCGATCCCTGGCTTATGCATTCTGCCTCTCTGGCCGGCTGAGCA
65 AGCACGTCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
* *
16499302 CCCACACGCTCGTTACGTGGGTTGGTTTAGGCATACGAAGTTCATTCCATGTCTAA
130 CCCACACGCTCGTTACATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
** * * * * * ** * * * * * * * *
16499358 GC---CCCAGCTGA-ACCGAGTGTTGTGGT-AG-CAGGACTG-GTAGTGGGATCGGCA-G--C-A
1 GCATACAGAGTTCATTCCCAGT-CTAAGATCAGACAGAACCGAG-GGTTGCAGCAGCAGGATCGA
* * * * * * *
16499412 C-GCA-G--A-GGGGGACCGAGCTGATCCTTGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
64 CAGCACGTCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGC
* ** * * ** * *
16499472 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGTGTACGGAGTTCATCCCCA-GTCTAA
129 ACCCACACGCTCGTTACATGGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAA
* * * * * * * * *
16499529 GCATATC-GAGTTCATTCCCAGCCTAACATTAGACTGGACCAAGGGTTACGGCAGCAGGATCGGC
1 GCATA-CAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * ** **
16499593 AGCACG-CAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTTTGCCTCTTTGGTCGGCTGAGCA
65 AGCACGTCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
** * * * * * * *
16499657 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATATCTAA
130 CCCACACGCTCGTTACATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
16499713 GC
1 GC
16499715 CCCAGCCAGA
Statistics
Matches: 417, Mismatches: 101, Indels: 47
0.74 0.18 0.08
Matches are distributed among these distances:
171 91 0.22
172 4 0.01
173 1 0.00
174 8 0.02
175 9 0.02
176 12 0.03
177 2 0.00
178 5 0.01
179 12 0.03
180 7 0.02
181 11 0.03
182 1 0.00
183 4 0.01
184 189 0.45
185 59 0.14
186 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGAACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGTCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCAC
CCACACGCTCGTTACATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:16499604 original size:355 final size:355
Alignment explanation
Indices: 16499076--16499720 Score: 864
Period size: 355 Copynumber: 1.8 Consensus size: 355
16499066 GGATCGGGCC
* * *
16499076 GATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
1 GATCCCTGACTTGCGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTT
* * * * *
16499141 GGCTTAGGCTTACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCTTACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAACATCAG
* * * * * * *
16499206 ACCAGACCGAGGGTTGCAGCAGCATGATCGACAGGATGCAGGGGGGACCGAGCCGATCCCTGGCT
131 ACCAGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACT
* * *
16499271 TATGCATTCTGCCTCTCTGGCCGGCTGAGCACCCACACGCTCGTTACGTGGGTTGGTTTAGGCAT
196 TACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCACACGCCCGTTACGTGGGTTGGCTTAGGCAT
*
16499336 ACGAAGTTCATTCCATGTCTAAGCCCCAGCTGAACCGAGTGTTGTGGTAGCAGGACTGGTAGTGG
261 ACGAAGTTCATTCCATATCTAAGCCCCAGCTGAACCGAGTGTTGTGGTAGCAGGACTGGTAGTGG
16499401 GATCGGCAGCACGCAGAGGGGGACCGAGCT
326 GATCGGCAGCACGCAGAGGGGGACCGAGCT
* * * * *
16499431 GATCCTTGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTT
1 GATCCCTGACTTGCGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTT
*
16499496 GACTTAGG-TGTACGGAGTTCATCCCCA-GTCTAAGCATATC-GAGTTCATTCCCAGCCTAACAT
66 GACTTAGGCT-TACAGAGTTCAT-CCCATGTCTAAGCATA-CAGAGTTCATTCCCAGCCTAACAT
* ** * * * *
16499558 TAGACTGGACCAAGGGTTACGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCTGATCCCCG
128 CAGACCAGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCG
* * * * ** *
16499623 ACTTGCGCATTTTGCCTCTTTGGTCGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGG
193 ACTTACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCACACGCCCGTTACGTGGGTTGGCTTAGG
* * *
16499688 CATAGGGAGTTTATTCCATATCTAAGCCCCAGC
258 CATACGAAGTTCATTCCATATCTAAGCCCCAGC
16499721 CAGACTGAGG
Statistics
Matches: 245, Mismatches: 42, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
354 1 0.00
355 240 0.98
356 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (355 bp):
GATCCCTGACTTGCGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTT
GACTTAGGCTTACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAACATCAG
ACCAGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACT
TACGCATTCTGCCTCTCTGGCCGGCTGAGCACCCACACGCCCGTTACGTGGGTTGGCTTAGGCAT
ACGAAGTTCATTCCATATCTAAGCCCCAGCTGAACCGAGTGTTGTGGTAGCAGGACTGGTAGTGG
GATCGGCAGCACGCAGAGGGGGACCGAGCT
Found at i:16500040 original size:26 final size:26
Alignment explanation
Indices: 16500004--16500056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16499994 GTTGGCTTAG
*
16500004 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16500030 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16500056 G
1 G
16500057 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16506645 original size:26 final size:26
Alignment explanation
Indices: 16506616--16506668 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16506606 GTTGACTTAG
* * *
16506616 GCATATAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16506642 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16506668 G
1 G
16506669 ATTGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16506958 original size:159 final size:158
Alignment explanation
Indices: 16506682--16506976 Score: 383
Period size: 159 Copynumber: 1.9 Consensus size: 158
16506672 GGATCAGATC
* * * * *
16506682 GAGGGTTGTGGTAGTAGGATCGATAGCACGTAGGGGGAACCGGGCCAATCCCTGGCTTGCGCATT
1 GAGGGTTGTGGCAGCAGGATCGATAGCACGTAGGGGGAACCGGGCCAATCCCCGACTTACGCATT
* * ** * * * * *
16506747 CTGCCTCTCTGACCGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTCCGACCGACTCAACGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
16506812 CATTCCATTTCTAAGCCCCAATCGAATT
131 CATTCCATTTCTAAGCCCCAATCGAATT
* * * * * *
16506840 GAGGGTTGTGGCAGCGGGATCGGTAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTACGCAT
1 GAGGGTTGTGGCAGCAGGATCGATAGCACGTAG-GGGGAACCGGGCCAATCCCCGACTTACGCAT
* *
16506905 TATGCCTCTCCGACCGACTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGT
65 TATGCCTCTCCGACCGACTCAACGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGAAGT
16506970 TCATTCC
130 TCATTCC
16506977 TAGTCTAATA
Statistics
Matches: 114, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
158 29 0.25
159 85 0.75
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGATCGATAGCACGTAGGGGGAACCGGGCCAATCCCCGACTTACGCATT
ATGCCTCTCCGACCGACTCAACGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
CATTCCATTTCTAAGCCCCAATCGAATT
Found at i:16507154 original size:26 final size:26
Alignment explanation
Indices: 16507118--16507170 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16507108 GTTGGCTTAG
*
16507118 GCATACGGAGTCCATTCC-ATGTCTAA
1 GCATACAGAGTCCATTCCTA-GTCTAA
*
16507144 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTCCATTCCTAGTCTAA
16507170 G
1 G
16507171 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCTAGTCTAA
Found at i:16508238 original size:26 final size:26
Alignment explanation
Indices: 16508208--16508286 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16508198 GTTAACTTAG
* *
16508208 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16508234 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16508260 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16508286 G
1 G
16508287 ATCAGACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16509934 original size:158 final size:159
Alignment explanation
Indices: 16509655--16509946 Score: 372
Period size: 158 Copynumber: 1.8 Consensus size: 159
16509645 CCAAATTGAC
* * * * * *
16509655 GGTTGTGGGAGCGGGATCGACAGCATGTAGAGGGGGATCGTGTCAATCCCTGACTTACGCATTAT
1 GGTTGTGGCAGCAGGATCGACAACATGTAGAGGGGGATCGGGCCAATCCCCGACTTACGCATTAT
* * ** * *
16509720 GCCTCTTCGGCCGGCTCAGCGCCCGCACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCA
66 GCCTCTTCAGCCGGCTCAGCACCCGCACACTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCA
16509785 TTCCCAATCTAAGATCGGACTGGAATGAG
131 TTCCCAATCTAAGATCGGACTGGAATGAG
* * * *
16509814 GGTTGTGGCAGCAGGATCGACAACATGTAGA-GGGGA-CTGGGCCATTCCCCGGCTTGCGCATTC
1 GGTTGTGGCAGCAGGATCGACAACATGTAGAGGGGGATC-GGGCCAATCCCCGACTTACGCATTA
* * * **
16509877 TGCCTCTTCAGCCGGTTGAGCACCCGCACGCTCATTCCGTGGGTTGGGTTAGGCATACGGAGTTC
65 TGCCTCTTCAGCCGGCTCAGCACCCGCACACTCATTCCGTGGGTTGACTTAGGCATACGGAGTTC
16509942 ATTCC
130 ATTCC
16509947 ATGCCTAAGC
Statistics
Matches: 111, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 82 0.74
159 28 0.25
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GGTTGTGGCAGCAGGATCGACAACATGTAGAGGGGGATCGGGCCAATCCCCGACTTACGCATTAT
GCCTCTTCAGCCGGCTCAGCACCCGCACACTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAATCTAAGATCGGACTGGAATGAG
Found at i:16509955 original size:158 final size:158
Alignment explanation
Indices: 16509526--16509956 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 158
16509516 AACAGTACGT
* * * * * * * *
16509526 AGGGGGACCGGGCCAAT-CCCTAGCTTATGCATTTTGCCTCTCCGGTCGGTTGAGCTCCCGTACG
1 AGGGGGATCGGGCCAATCCCCGA-CTTACGCATTATGCCTCTTCGGCCGGTTGAGCACCCGCACG
*
16509590 CCCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCCAGCCAAATTGA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATG-CTAAGCCCCAGCCAAATTGA
* * *
16509654 CGGTTGTGGGAGCGGGATCGACAGCATGTAG
128 CGGTTGTGGCAGCAGGATCGACAACATGTAG
* * * * * * *
16509685 AGGGGGATCGTGTCAATCCCTGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACAC
1 AGGGGGATCGGGCCAATCCCCGACTTACGCATTATGCCTCTTCGGCCGGTTGAGCACCCGCACGC
* * * ** * **
16509750 TTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAAT-CTAAG-ATCGGACTGGAA-TG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC-ATGCTAAGCCCCAG-C-CAAATTG
*
16509812 AGGGTTGTGGCAGCAGGATCGACAACATGTAG
127 ACGGTTGTGGCAGCAGGATCGACAACATGTAG
* * * * *
16509844 A-GGGGA-CTGGGCCATTCCCCGGCTTGCGCATTCTGCCTCTTCAGCCGGTTGAGCACCCGCACG
1 AGGGGGATC-GGGCCAATCCCCGACTTACGCATTATGCCTCTTCGGCCGGTTGAGCACCCGCACG
* * *
16509907 CTCATTCCGTGGGTTGGGTTAGGCATACGGAGTTCATTCCATGCCTAAGC
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-CTAAGC
16509957 ATACGAAGTT
Statistics
Matches: 217, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 3 0.01
158 87 0.40
159 115 0.53
160 8 0.04
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
AGGGGGATCGGGCCAATCCCCGACTTACGCATTATGCCTCTTCGGCCGGTTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCTAAGCCCCAGCCAAATTGACGG
TTGTGGCAGCAGGATCGACAACATGTAG
Found at i:16510689 original size:26 final size:26
Alignment explanation
Indices: 16510639--16510691 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16510629 GTTGACTTAG
*
16510639 GCATACGAAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCCTCAATCTAA
16510665 GCATAC-AGAGTTCATTCC-CAATCTAA
1 GCATACGA-AGTTCA-TCCTCAATCTAA
16510691 G
1 G
16510692 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAATCTAA
Found at i:16511504 original size:25 final size:26
Alignment explanation
Indices: 16511470--16511521 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16511460 GTTGACTTAG
16511470 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16511495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16511521 G
1 G
16511522 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16511794 original size:359 final size:361
Alignment explanation
Indices: 16511187--16512062 Score: 867
Period size: 359 Copynumber: 2.4 Consensus size: 361
16511177 TAGGACCAGC
** * *
16511187 AGCAGGATCGGTAGCATGCAGGTGGGGACCGGACGATCCCACTTACGCATTCTACCTCTCCGATC
1 AGCAGGATCAATAGCACGCAGGTGGGGACCAGACGATCCCACTTACGCATTCTACCTCTCCGATC
* * *
16511252 GACTGAGCTCCCGCACGCTCATTTCGTGGGTTGGCATAGGCATACGGAGTTCATTCCATGTCTAA
66 GACTGAGCACCCGCACGCTCATTTCATGGGTTGGCATACGCATACGGAGTTCATTCCATGTCTAA
* * * *
16511317 GCACCAGCCGGACCGAGGTTGTAGAGACAGGACCGGCAACGGGATTGACAGCACGCAAAGGGATC
131 GCACCAACCGAACCGAGGTTGTAGAGACAGCACCGGCAACGGGATTGACAGCACACAAAGGGATC
* * * * * * * *
16511382 GGGTTGATCCCGATATGCGCATTATGCCTCTCTGACTAGCCTCTCCGGTCGGCTGAGCACCCACA
196 AGGCTGATCCCGACATGCACATTATGCCTCTCCGACGAGACTCTCCGGTCGGCTGAACACCCACA
* *
16511447 CACTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCAT
261 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCAT
16511510 TCCCAGTCTAAGATCGGATCAGACCAAAGGTTGCGT
326 TCCCAGTCTAAGATCGGATCAGACCAAAGGTTGCGT
** * * *
16511546 AGCAGGATCAATAGCACGCAGG-GGGGACCAGACCGATCCGGCTTATGTATTCTGCCTCTCCGAT
1 AGCAGGATCAATAGCACGCAGGTGGGGACCAGA-CGATCCCACTTACGCATTCTACCTCTCCGAT
** * * * * * *
16511610 CGGTTGAGCACCCGTATGC-CGTTTCATGGGTTGGCTTCCGCATAGGGAGTTCATT-CATGTCTA
65 CGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCATACGCATACGGAGTTCATTCCATGTCTA
* * * * * *
16511673 AGCTCCAATCGAACCGAGGGTTGTGGCAG-CAGCACCGGTAACGGGA-T-CCAGCACACAGAGGG
130 AGCACCAACCGAACCGA-GGTTGTAG-AGACAGCACCGGCAACGGGATTGACAGCACACA-A-AG
* *
16511735 GGATCAGGCTGATCCCCGACATGCACATTATGCCTCTCCGACCGA-ACTCTCTGGTCGGCTGAAT
191 GGATCAGGCTGAT-CCCGACATGCACATTATGCCTCTCCGA-CGAGACTCTCCGGTCGGCTGAAC
* * *
16511799 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAG
254 ACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAG
* * * * * *
16511864 AGTTCATTCCCAGTCTAAGATTGGA-CTGGACCGAGGGTTGTGAC
319 AGTTCATTCCCAGTCTAAGATCGGATC-AGACCAAAGGTTGCG-T
* ** * * * * * * ** *
16511908 AGTAGGATTGACAGCATGCAGGAGGGG-CCGGGCTGATCCCTGGCTTACGCATTCTGTCTCTCCA
1 AGCAGGATCAATAGCACGCAGGTGGGGACCAGAC-GATCCC--ACTTACGCATTCTACCTCTCCG
* * * * * * * * * *
16511972 ACCGGCTGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCGTAAGGAGTTCATTCCATGTC
63 ATCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCATACGCATACGGAGTTCATTCCATGTC
* *
16512037 TAAG-ACCCAGCCGAATCGAAGGTTGT
128 TAAGCA-CCAACCGAACCG-AGGTTGT
16512063 GGCAGTGGGA
Statistics
Matches: 421, Mismatches: 77, Indels: 31
0.80 0.15 0.06
Matches are distributed among these distances:
356 8 0.02
357 23 0.05
358 73 0.17
359 116 0.28
360 29 0.07
361 52 0.12
362 25 0.06
363 4 0.01
364 34 0.08
365 31 0.07
366 25 0.06
367 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (361 bp):
AGCAGGATCAATAGCACGCAGGTGGGGACCAGACGATCCCACTTACGCATTCTACCTCTCCGATC
GACTGAGCACCCGCACGCTCATTTCATGGGTTGGCATACGCATACGGAGTTCATTCCATGTCTAA
GCACCAACCGAACCGAGGTTGTAGAGACAGCACCGGCAACGGGATTGACAGCACACAAAGGGATC
AGGCTGATCCCGACATGCACATTATGCCTCTCCGACGAGACTCTCCGGTCGGCTGAACACCCACA
CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCAT
TCCCAGTCTAAGATCGGATCAGACCAAAGGTTGCGT
Found at i:16511866 original size:26 final size:26
Alignment explanation
Indices: 16511830--16511882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16511820 GTTGACTTAG
*
16511830 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16511856 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16511882 G
1 G
16511883 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16512195 original size:157 final size:157
Alignment explanation
Indices: 16511996--16512356 Score: 370
Period size: 157 Copynumber: 2.3 Consensus size: 157
16511986 TGCACGCCCG
* *
16511996 TTTCGTGGGTTGGCTTAGGCGTA-AGGAGTTCATTCCATGTCTAAGACCCAGCCGAATCGAAGGT
1 TTTCGTGGGTTGGCTTAGGCATACA-GAGTTCATTCCA-GTCTAAGACCCAACCGAATCGAAGGT
* ** ** *
16512060 TGTGGCAGTGGGACCGGTAGCACGTA-GAGGGGACCAGGTCGATCCCCAGCTTACACATTATGCC
64 TATGGCAGCAGGACCGACAGCACGCAGGA-GGGACCAGGTCGATCCCCAGCTTACACATTATGCC
* **
16512124 TCTCTGACCGGTTCAGC-C-CGAACACTGCA
128 TCTCCGACCGACTCAGCGCTCGAACACT-CA
* * * * *
16512153 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAAGATCGAACCGGATTGAAGGTT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTC-CAGTCTAAGACCCAACCGAATCGAAGGTT
* * * * * *
16512218 ATGGCAGCAGGATCGACAGCATGCAGGAGGGATCAGGTCGGTCCCCAGCTTGCACATTCTGCCTC
65 ATGGCAGCAGGACCGACAGCACGCAGGAGGGACCAGGTCGATCCCCAGCTTACACATTATGCCTC
** * * * *
16512283 TCCGGTCGACTGAGCGCTCGCACGCTCG
130 TCCGACCGACTCAGCGCTCGAACACTCA
* *
16512311 TTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGA
16512357 TCGGACCGGA
Statistics
Matches: 167, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 112 0.67
158 48 0.29
159 7 0.04
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGACCCAACCGAATCGAAGGTTA
TGGCAGCAGGACCGACAGCACGCAGGAGGGACCAGGTCGATCCCCAGCTTACACATTATGCCTCT
CCGACCGACTCAGCGCTCGAACACTCA
Found at i:16512355 original size:158 final size:156
Alignment explanation
Indices: 16511856--16512387 Score: 505
Period size: 158 Copynumber: 3.4 Consensus size: 156
16511846 CCCAATCTAA
* * * * * * *
16511856 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGTGACAGTAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAAGGTTGTGGCAGTAGGATCGACA
* * ** * * *
16511921 GCATGCAGGAGGGGCC-GGGCTGATCCCTGGCTTACGCATTCTGTCTCTCCAACCGGCTGAGCAC
66 GCATGCAGGAGGGACCAGGTC-GATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCTGAGC-C
*
16511985 CTGCACGCCCGTTTCGTGGGTTGGCTTAG
129 C-GCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * *
16512014 GCGTA-AGGAGTTCATT-CCATGTCTAAGACCCAGCCGAATCGAAGGTTGTGGCAGTGGGACCGG
1 GCATACA-GAGTTCATTCCCA-GTCTAAGATCGAACCGGATCGAAGGTTGTGGCAGTAGGATCGA
* * * * * * *
16512077 TAGCACGTA-GAGGGGACCAGGTCGATCCCCAGCTTACACATTATGCCTCTCTGACCGGTTCAGC
64 CAGCATGCAGGA-GGGACCAGGTCGATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCTGAGC
* * * *
16512141 CCGAACACTGCATTTCGTGGGTTGACTTAG
128 CCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * *
16512171 GCATACAGAGTTCATTCACAGTCTAAGATCGAACCGGATTGAAGGTTATGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAAGGTTGTGGCAGTAGGATCGACA
* * * ** *
16512236 GCATGCAGGAGGGATCAGGTCGGTCCCCAGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCT
66 GCATGCAGGAGGGACCAGGTCGATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCTGAGC-C-
*
16512301 CGCACGCTCGTTTCGTGGGTTGGTTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
16512329 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGTAGGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAAGGTTGTGGCAGTAGGA
16512388 CTAGTAGCGG
Statistics
Matches: 291, Mismatches: 73, Indels: 20
0.76 0.19 0.05
Matches are distributed among these distances:
156 4 0.01
157 120 0.41
158 158 0.54
159 9 0.03
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAAGGTTGTGGCAGTAGGATCGACA
GCATGCAGGAGGGACCAGGTCGATCCCCAGCTTACACATTCTGCCTCTCCGACCGGCTGAGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16512467 original size:13 final size:13
Alignment explanation
Indices: 16512449--16512473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16512439 GCGCATTCTA
16512449 CCTCTCCGACTGG
1 CCTCTCCGACTGG
16512462 CCTCTCCGACTG
1 CCTCTCCGACTG
16512474 ACTGAGCACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.20, T:0.24
Consensus pattern (13 bp):
CCTCTCCGACTGG
Found at i:16512547 original size:26 final size:26
Alignment explanation
Indices: 16512511--16512563 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16512501 GTTGAATTAG
16512511 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * * *
16512537 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
16512563 G
1 G
16512564 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:16512883 original size:25 final size:26
Alignment explanation
Indices: 16512849--16512900 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
16512839 GTTGGCCTAG
*
16512849 GCATACGGAGTTCATT-CATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
16512874 GCATATGGAGTTGATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16512900 G
1 G
16512901 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16518852 original size:26 final size:26
Alignment explanation
Indices: 16518815--16518867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16518805 GTTGGCTTAG
*
16518815 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCGCA-GTCTAA
16518841 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCGCAGTCTAA
16518867 G
1 G
16518868 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGCAGTCTAA
Found at i:16520018 original size:159 final size:156
Alignment explanation
Indices: 16519559--16520061 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 156
16519549 CCCAATCTAA
**
16519559 GCATACAGAGTTCATTCCCA-GTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGT
1 GCATACAGAGTTCATT-CCATGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * * *
16519623 AGCACGTAG-GGGGGACCGGACCTATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCC
65 AGCACGTAGAGGGGGACCGG-TCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCG
* * *
16519687 CCCGCAAGCCTGTTTCATGGGGTGGCTTAG
129 CCCGCAAGTC-GTTTCAT-GGTTTGCTTAG
* *** * * * * *
16519717 GCATA-AGGAATTCATTCCATGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGCCAGTGGGACCGA
1 GCATACA-GAGTTCATTCCATGTCTAAG-ATTAGACCAGACCGAGGGTTGTGGCAGTAGGATCGA
* * * * * * *
16519780 CAGGACGCAGAGGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGT
64 CAGCACGTAGAGGGGGACC-GGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTGAGC
16519845 GCCCG-AATGCTCGTTTCATGGTTTGACTTAG
128 GCCCGCAA-G-TCGTTTCATGGTTTG-CTTAG
* * * * *
16519876 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGATCAGACCAAGGGTTGTGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * *
16519940 AGCACGTAGAGGGGGACCTGGTCGATCCCCAACTTACGCATTTTGCCACTCCTACCGGCTGAGCG
65 AGCACGTAGAGGGGGACC-GGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCG
* * * *
16520005 CCTGCACGTTCGTTTCGTAGGTTAGCTTAG
129 CCCGCAAG-TCGTTTCAT-GGTTTGCTTAG
*
16520035 GCATACAGAGTGCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
16520062 CATACAAAGT
Statistics
Matches: 269, Mismatches: 62, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.01
158 62 0.23
159 191 0.71
160 12 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGTAGAGGGGGACCGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCGCC
CGCAAGTCGTTTCATGGTTTGCTTAG
Found at i:16520076 original size:26 final size:26
Alignment explanation
Indices: 16520035--16520087 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16520025 GTTAGCTTAG
*
16520035 GCATACAGAGTGCATT-CCATGTCTAA
1 GCATACAAAGTGCATTCCCA-GTCTAA
*
16520061 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTGCATTCCCAGTCTAA
16520087 G
1 G
16520088 ATTGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTGCATTCCCAGTCTAA
Found at i:16520268 original size:26 final size:26
Alignment explanation
Indices: 16520232--16520283 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16520222 TTGACTTAGC
* *
16520232 CATACGGAGTTCATCCCTAGTCTAAG
1 CATACAGAGTTCATCCCTAATCTAAG
*
16520258 CATACAGAGTTCATTCCTAATCTAAG
1 CATACAGAGTTCATCCCTAATCTAAG
16520284 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCTAATCTAAG
Found at i:16522397 original size:26 final size:26
Alignment explanation
Indices: 16522363--16522415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16522353 GTTGTCTTAG
*
16522363 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16522389 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16522415 G
1 G
16522416 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16523119 original size:159 final size:159
Alignment explanation
Indices: 16522638--16523154 Score: 587
Period size: 159 Copynumber: 3.3 Consensus size: 159
16522628 CACTTTTTTT
*
16522638 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTG
1 ATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTG
* * * * *
16522702 GCAGCAGGATCGATAGCACGTAGGGGGGGACCGGGCTGATCCCCGGCTTACGCGTTCTACCTTTC
65 GCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTC
* * * *
16522767 AT-GCCGGTTGAGCACCCACACGCCCATTTC
130 -TGGTCGGCTGAGCACCCGCACGCTCATTTC
* * ***
16522797 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCTA-ACCGGACCGA-GGTTGTG
1 ATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGTG
* * * * * * * * * *
16522860 GCAGCGGGACCGGTAGGATGCAGAGGGGGACCGGGCCGATCTCTGGCTTGCGCATTATGCCTCT-
65 GCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTC
* *
16522924 TCGGTCGGCTTAGCACCCGCACGCTCATGTC
130 T-GGTCGGCTGAGCACCCGCACGCTCATTTC
* * * *
16522955 ATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTATG
1 ATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTG
* * * *
16523019 GTAGCAGGATCGATAGCACGCAGTGGGGGACCGGGTTGATCCCCGGCTTGCACATTCTACCTCTC
65 GCAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTC
* * *
16523084 TGGTCGACTGAGCACCCGCACACTCGTTTC
130 TGGTCGGCTGAGCACCCGCACGCTCATTTC
* *
16523114 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 ATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
16523155 CATACAAAGT
Statistics
Matches: 291, Mismatches: 58, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 126 0.43
159 161 0.55
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
ATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGG
CAGCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCT
GGTCGGCTGAGCACCCGCACGCTCATTTC
Found at i:16523887 original size:26 final size:26
Alignment explanation
Indices: 16523851--16523903 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16523841 GTTGACTTAG
16523851 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16523877 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16523903 G
1 G
16523904 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16524237 original size:159 final size:157
Alignment explanation
Indices: 16523877--16524373 Score: 417
Period size: 159 Copynumber: 3.1 Consensus size: 157
16523867 CCCAGTCTAA
* ** * * * * *
16523877 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CCAGACCGAAGGTTGCGACAGCAAGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGGCAGCAAGACCGAC
* *
16523941 AGCACGCAGGGGGACCGGGCCGATCCCTGGCATGTGCATTCTGCCTCTCTGGTCGGCTGAGTGCC
65 AGCACGCAGGGGGACCGGGCCGATCCCTGGCATGTGCATTCTGCCTCTCTGATCGGCTCAGTGCC
* * *
16524006 CGCACACCCATTTCGTGGGTTGGCTTAG
130 CGCACACCCATTTCATGGGTTGACTTAC
* * ** * * *
16524034 GCATAGGGAGTTCAGTCCGT-GTCTAAGGCCCAGTTAG-ACCGAGGGTTGTGGCAGCGAGACCGA
1 GCATACGGAGTTCATTCC-TAGTCTAA-GATCAGATCGAACCGAGGGTTGTGGCAGCAAGACCGA
* * * *
16524097 TAGCACGCAGAGGGGGATCGGGGCGATCCCTGGCTTGTGCATTCTGCCTCT-TCGATCGGCTCAG
64 CAGCACGC--AGGGGGACCGGGCCGATCCCTGGCATGTGCATTCTGCCTCTCT-GATCGGCTCAG
***
16524161 TGCCCGCACACTTGTTTCATGGGTTGACTTAC
126 TGCCCGCACACCCATTTCATGGGTTGACTTAC
* * * * **
16524193 GCATACGGAGTTCATTGCTAGTCTAAGATCAGATCGAACCGAGGGTTGTGGTAGTAGGATAGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCAAGACCGACA
* * * * * * * * * **
16524258 GCACGTAAGGGGGGACTGGGCCGGTCCCTGGCTTGTGCATTTTGCATCTCTGACCGACTGAGCAC
66 GCACG-CA-GGGGGACCGGGCCGATCCCTGGCATGTGCATTCTGCCTCTCTGATCGGCTCAGTGC
* * * *
16524323 CCGCACGCACGCTCGTTTTATGGGTTGGCTTAG
129 CCGCA--CAC-C-CATTTCATGGGTTGACTTAC
*
16524356 GCATACGGAGTTAATTCC
1 GCATACGGAGTTCATTCC
16524374 ATTTCTAAGC
Statistics
Matches: 265, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 50 0.19
158 11 0.04
159 168 0.63
160 1 0.00
161 3 0.01
163 32 0.12
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGTGGCAGCAAGACCGACA
GCACGCAGGGGGACCGGGCCGATCCCTGGCATGTGCATTCTGCCTCTCTGATCGGCTCAGTGCCC
GCACACCCATTTCATGGGTTGACTTAC
Found at i:16524767 original size:26 final size:26
Alignment explanation
Indices: 16524738--16524790 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16524728 GTTGACTTAG
*
16524738 GCATACATAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16524764 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16524790 G
1 G
16524791 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16525253 original size:160 final size:157
Alignment explanation
Indices: 16525046--16525422 Score: 398
Period size: 158 Copynumber: 2.4 Consensus size: 157
16525036 ATCGACTCAA
* * * *
16525046 CACCCGCACGCTCATTTCGGGGGTTGACTTATGCATA-TGAAGTTCATTCCTAGTCTAAGATCAA
1 CACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCC-AGTCTAAGATCAA
** * * * * *
16525110 ACCAGACCGAGGGGTTACCGCAGCAGGATTGATAGCACCCAGGGGGGGA-CTAGGTCGATTCCCG
64 ACCAGACCGA-GGGTTACCGCAGCAGGACCGACAGCACCCA-AGAGGGATC-AGGCCGATCCCCG
* *
16525174 GCTTGTGCATTCTGCCTCTTCGGCCGGCTGAG
126 ACTTGTGCATTCTGCCTCTCCGGCCGGCTGAG
* * *
16525206 CACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
1 CACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAAA
* * * * * ** * *
16525271 CCGGATCGAGGGTTGCGGTAGCAGGACCGACAGCACGTAAGAGGGATCGGGCCGGTCCCCGACTT
65 CCAGACCGAGGGTTACCGCAGCAGGACCGACAGCACCCAAGAGGGATCAGGCCGATCCCCGACTT
*
16525336 GTGCATTCTGCCTCTCCGGTCGGCTGAG
130 GTGCATTCTGCCTCTCCGGCCGGCTGAG
* * * * *
16525364 CGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAG
1 CACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCA-GTCTAAG
16525423 CATACGGAGT
Statistics
Matches: 180, Mismatches: 33, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 91 0.51
159 23 0.13
160 60 0.33
161 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAAAC
CAGACCGAGGGTTACCGCAGCAGGACCGACAGCACCCAAGAGGGATCAGGCCGATCCCCGACTTG
TGCATTCTGCCTCTCCGGCCGGCTGAG
Found at i:16525430 original size:26 final size:25
Alignment explanation
Indices: 16525399--16525454 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
16525389 GGCTTAGGCG
16525399 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTACCA-GTCT-AGCA
16525425 TACGGAGTTCATTACCAGTCTAGCA
1 TACGGAGTTCATTACCAGTCTAGCA
16525450 T-CGGA
1 TACGGA
16525455 CCGGACTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.14
25 5 0.17
26 17 0.59
27 3 0.10
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
TACGGAGTTCATTACCAGTCTAGCA
Found at i:16526306 original size:26 final size:26
Alignment explanation
Indices: 16526277--16526329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16526267 GTTGGCTTAG
16526277 GCATACGAAGTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16526303 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16526329 G
1 G
16526330 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16526788 original size:158 final size:154
Alignment explanation
Indices: 16526363--16526810 Score: 419
Period size: 153 Copynumber: 2.9 Consensus size: 154
16526353 ATAGCAGGAC
* * *
16526363 CAGCAGCAGGATCGATAGCACGTAAGGGGGACCGAGCTGATCCCCGACTTGGGCATTCTGCCTCT
1 CAGCAG-AGGATCGACAGCACGTAGGGGGGATCG-GCTGATCCCCG-CTTGGGCATTCTGCCTCT
* * * * * * *
16526428 CCGGCCGGTTGAGCACTCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAC
63 CCGACCGGTTGAGCGCCCG-ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC
*
16526493 GTCTAAGCCCCAGTCAGACCGAGGGTTG
127 GTCTAAGACCCAGTCAGACCGAGGGTTG
** * * * * * *
16526521 TGGTC-GCGAGACCGGCAGCACATAGAGGGGG-T----TGATCCCCAGCTTGCGCATTATGCCTC
1 CAG-CAGAG-GATCGACAGCACGTAG-GGGGGATCGGCTGATCCCC-GCTTGGGCATTCTGCCTC
* * * *
16526580 TCCGACCGGCTTCAGTGCCCGAGCGCTCGTTTCATGGGTTGACTTA-GCATACGGAGTTCATTCC
62 TCCGACCGG-TTGAGCGCCCGA-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
** *
16526644 -CAGTCTAAGATTCGGATCAGACCGAGGGTTG
125 AC-GTCTAAGACCCAG-TCAGACCGAGGGTTG
* *
16526675 CAGCAGTAGGATCGACAGCACGCAGGGGGGATCGGGCTG-TCCCCGGTTGGTGCATTCTGCCTCT
1 CAGCAG-AGGATCGACAGCACGTAGGGGGGATC-GGCTGATCCCCGCTTGG-GCATTCTGCCTCT
* *
16526739 CCGACCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
63 CCGACCGGTTGAGCGCCCG-ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC
16526804 GTCTAAG
127 GTCTAAG
16526811 CATACGGAGT
Statistics
Matches: 228, Mismatches: 42, Indels: 40
0.74 0.14 0.13
Matches are distributed among these distances:
152 1 0.00
153 64 0.28
154 56 0.25
155 1 0.00
157 35 0.15
158 63 0.28
159 8 0.04
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (154 bp):
CAGCAGAGGATCGACAGCACGTAGGGGGGATCGGCTGATCCCCGCTTGGGCATTCTGCCTCTCCG
ACCGGTTGAGCGCCCGACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCT
AAGACCCAGTCAGACCGAGGGTTG
Found at i:16526810 original size:507 final size:504
Alignment explanation
Indices: 16525738--16526938 Score: 1285
Period size: 507 Copynumber: 2.4 Consensus size: 504
16525728 TCTTCGGGCG
* * * * *
16525738 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCAT-TCCAGTCTAAG
* * *
16525803 CACACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-AAGGTT---TG--TGA-CAGCA--A
64 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTGCGTGCAGGACCAGCAGCA
* * * * **
16525859 -GATCGACAGCACGT-AGGGTTGG-CCGAGCCGATCCCTGGCTTATGCATTCTGCCTCTCTGATC
128 GGATCGACAGCACGTAAGGG--GGACCGAGCTGATCCCTGACTTACGCATTCTGCCTCTCCGGCC
* * * * *
16525921 GGTTGAGCACCTGCATGCCCGTTTCGTGGTTAGCCTAGGCGTAGGGAGTTCACTCTATGTCTAAG
191 GGTTGAGCACCTGCACGCCCATTTCGTGGTTAGCCTAGGCATAGGGAGTTCACTCCACGTCTAAG
* * *
16525986 CCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATACAGAGGGGGATCGGGCTGATCC
256 CCCCAACCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAGGGGGAT---G-TGATCC
* * * * ** * *
16526051 TCGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAGCGCTCGTACGCTCATTTCGTGGGTTGACTT
317 CCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTT
* * * * * *
16526116 ATGCCTATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGTGTTGCGGTAGCACGATCGA
382 ATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCACGATCGA
* * *
16526181 CAGCACGTAAGGGGGGATCGGGCCAATCCTCGACTTATCCATTTTACCTCTCTGACCA
447 CAGCACGTAAGGGGGGATCGGGCCAATCCCCGACTTATCCATTCTACCTCTCCGACCA
* *
16526239 GCTGAGTGCCCGTACGCTCTTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCA-GTCTAAG
*
16526304 CATACGCAGTTCATTCCCAGTCTAAGATCAGACAGGATCGAGGGTTGCGATAGCAGGACCAGCAG
64 CATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGATCGAGGGTTGCG-T-GCAGGACCAGCAG
* * **
16526369 CAGGATCGATAGCACGTAAGGGGGACCGAGCTGATCCCCGACTTGGGCATTCTGCCTCTCCGGCC
126 CAGGATCGACAGCACGTAAGGGGGACCGAGCTGATCCCTGACTTACGCATTCTGCCTCTCCGGCC
* * * *
16526434 GGTTGAGCA-CTCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTA
191 GGTTGAGCACCT-GCACGCCCATTTCGT-GGTTAGCCTAGGCATAGGGAGTTCACTCCACGTCTA
** * *
16526498 AGCCCCAGTCAGACCGAGGGTTGTGGTC-GCGAGACCGGCAGCACATAGAGGGGG-T-TGATCCC
254 AGCCCCAACCAGACCGAGGGTTGTGG-CAGCGAGACCGACAGCACACAGAGGGGGATGTGATCCC
* *
16526560 CAGCTTGCGCATTATGCCTCTCCGACCGGCTTCAGTGCCCG-AGCGCTCGTTTCATGGGTTGACT
318 CAGCTTGCGCATTATGCCTCTCCGACCGGC-TCAGCGCCCGTA-CGCTCATTTCATGGGTTGACT
** * * *
16526624 TA-GCATACGGAGTTCATTCCCAGTCTAAGATTCGGATCAGACCGAGGGTTGCAGCAGTAGGATC
381 TATGCATACGGAGTTCATTCCCAGTCTAAGA-TCAAACCAGACCGAGGGTTGCAGCAGCACGATC
* ** * * * * *
16526688 GACAGCACG-CAGGGGGGATCGGG-CTGTCCCCG-GTTGGTGCATTCTGCCTCTCCGACCG
445 GACAGCACGTAAGGGGGGATCGGGCCAATCCCCGACTT-ATCCATTCTACCTCTCCGACCA
*
16526746 GTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCA-GTCTAAG
* * * *
16526811 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAGCTGCAGGACTAGCAG
64 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTGC-G-TGCAGGACCAGCAG
* * ** * *
16526876 CAGGATCGACAGCACGCAGGGGGGACAAAG-TCGATCCCTGACTTTCGCATTCTACCTCTCCGG
126 CAGGATCGACAGCACGTAAGGGGGACCGAGCT-GATCCCTGACTTACGCATTCTGCCTCTCCGG
16526939 TTGGCCTCTC
Statistics
Matches: 585, Mismatches: 87, Indels: 50
0.81 0.12 0.07
Matches are distributed among these distances:
500 5 0.01
501 87 0.15
502 5 0.01
506 4 0.01
507 189 0.32
508 74 0.13
509 64 0.11
510 5 0.01
512 5 0.01
513 67 0.11
514 79 0.14
515 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (504 bp):
GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCGAGGGTTGCGTGCAGGACCAGCAGCAGGA
TCGACAGCACGTAAGGGGGACCGAGCTGATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGTTG
AGCACCTGCACGCCCATTTCGTGGTTAGCCTAGGCATAGGGAGTTCACTCCACGTCTAAGCCCCA
ACCAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACACAGAGGGGGATGTGATCCCCAGCTTGC
GCATTATGCCTCTCCGACCGGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTATGCATACG
GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCACGATCGACAGCACGTA
AGGGGGGATCGGGCCAATCCCCGACTTATCCATTCTACCTCTCCGACCA
Found at i:16526820 original size:26 final size:26
Alignment explanation
Indices: 16526784--16526836 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16526774 GTTGGCTTAG
16526784 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16526810 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16526836 G
1 G
16526837 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16527023 original size:26 final size:26
Alignment explanation
Indices: 16526993--16527045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16526983 GTTGACTTAG
*
16526993 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16527019 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16527045 G
1 G
16527046 ATCTAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16527387 original size:26 final size:26
Alignment explanation
Indices: 16527337--16527389 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16527327 GCTGGCTTAG
* *
16527337 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16527363 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16527389 G
1 G
16527390 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16527470 original size:15 final size:15
Alignment explanation
Indices: 16527446--16527478 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16527436 TAAATTTTTT
16527446 TCGCCCAGGGCACCA
1 TCGCCCAGGGCACCA
*
16527461 TCGCCTAGGGCACCA
1 TCGCCCAGGGCACCA
16527476 TCG
1 TCG
16527479 ACGACATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.42, G:0.27, T:0.12
Consensus pattern (15 bp):
TCGCCCAGGGCACCA
Found at i:16528368 original size:159 final size:158
Alignment explanation
Indices: 16528074--16528437 Score: 356
Period size: 159 Copynumber: 2.3 Consensus size: 158
16528064 CCCAGTCGAA
* * *
16528074 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTACGACAGCAGGACCGACA
* * * *
16528139 ACACGCAAGGTGGACCTGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 ACACGCAAGGTGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCC
16528204 CGCACGCCCATTTCGTGCGTTGGCTTAG
131 CGCACGCCCATTTCGTGCGTTGGCTTAG
* * ** * *
16528232 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATAGGGAGTTCATTCCTA-GTCTAAG-ACCAGATCGGACCGAGGGTTACGACAGCAGGACCGA
* * * * * * * *
16528295 CAGCATGCAGAGGTGGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTCCGGCTAGCTCAGT
64 CAACACGCA-AGGTGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGC
* ** * * * *
16528360 GCCTGCACGATCGTTTCATGGGTT-GATTGAG
128 GCCCGCACGCCCATTTCGTGCGTTGGCTT-AG
** * * * * *
16528391 GCATACAGAGTTCATTCCCAGTGTAGGATCAGATCGGACCAAGGGTT
1 GCATAGGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTT
16528438 GCAGCAACAG
Statistics
Matches: 163, Mismatches: 37, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 59 0.36
159 99 0.61
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTACGACAGCAGGACCGACA
ACACGCAAGGTGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCC
CGCACGCCCATTTCGTGCGTTGGCTTAG
Found at i:16528591 original size:26 final size:26
Alignment explanation
Indices: 16528561--16528612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16528551 GTTGGCTTAG
16528561 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16528587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16528613 CATTAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16528946 original size:513 final size:502
Alignment explanation
Indices: 16527998--16529313 Score: 1350
Period size: 513 Copynumber: 2.6 Consensus size: 502
16527988 GCACATCTTG
* * * * *
16527998 CCTCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTCACTTGGGCATACGGAGTTCAT
1 CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
16528063 CCCCA-GTCGAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGACA
66 -TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCGGACCGAAGGTTACGACA
* *
16528127 GCAGGATCGACAACACGCAAGGTGGACCTGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
130 GCAGGATCGACAACACGCAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
* *
16528192 CGGCTGAGCGCCCGCACGCCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTA
195 CGGCTGAGCGCCCGCACACCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * *
16528257 AGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGTGGATCGGGTCGAT
260 AGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAAGTGGATCGGGTCGAT
** ** ** *
16528322 CCCCGACTTGTGCATTATGCCTCTCCGGCTAGCTCAGTGCCTGCACGATCGTTTCATGGGTTGAT
325 CCCCGACTTACGCATTATGCCTCTCCGGCTAGCTCAACGCCAACAAGATCGTTTCATGGGTTGAT
* * * *
16528387 TGAGGCATACAGAGTTCATTCCCAGTGTAGGATCAGATCGGACCAAGGGTTGCAGCAACAGTACC
390 TGAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT------AC-G----
* ** * * *
16528452 AGTAGTAGGATCGGTAGCACGC-AGGGGGGATCGGATCGATCCTCAACTTACGCATTCTA
444 -GTAGCAGGATCGACAGCACGCAAGGGAGGATCGGACCGATCCCCAACTTACGCATTCTA
* * * * *
16528511 CCTCTCTGGCCGGCTGAACGCCCGGACGCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* ** * * *
16528576 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATTAGATCGTTCTGAAGGTTGCGGCAG
66 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCGGACCGAAGGTTACGACAG
* * * * * * *
16528641 TAGGATCGGCAGCACGCAGGGGGGCCCAGGCCTATCCCC-AGCTTGCGTATTCTGCCTCTCC-AG
131 CAGGATCGACAACACGCAAGGGGGACCAGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGA-
* * * *
16528704 CCGGCTGAGTGGCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCT
194 CCGGCTGAGCGCCCGCACACCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * *
16528769 AAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCGATAGCACGTAGAAAG-GGATTGGGTCG
259 AAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAG-AAGTGGATCGGGTCG
* * * * * *
16528833 ATCCCCGGCTTACGCATTATGCCTTTTCGGCTAGCTCAACGCCAACAAGCTTGTTTCGTGGGTTG
323 ATCCCCGACTTACGCATTATGCCTCTCCGGCTAGCTCAACGCCAACAAGATCGTTTCATGGGTTG
*
16528898 ACTT-AGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGG
388 A-TTGAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGG
* * ** * *
16528962 ATCGACAGCACGCAAGGGAGGATCGGGCCGGTCCCCGGCTTGCGCATTCTG
452 ATCGACAGCACGCAAGGGAGGATCGGACCGATCCCCAACTTACGCATTCTA
* * * * * *
16529013 CCTCTCCGACCGGTTGAGCACCCGCACGCTTGTTTCATGGGTTGCCTTAGGCATACGGAGTTCAT
1 CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
16529078 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
66 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCGGACCGAAGGTT-----A-
* * * * ** * *
16529143 CAAGACCATCAGTAGGATCGACAGCACGCAAGGGGGGATCGGGTTGATCCCCGACTTGTGTATTC
125 C--G---A-CAGCAGGATCGACAACACGCAA-GGGGGACCAGGCCGATCCCCGACTTGCGCATTC
* * * * * * * *
16529208 TGCCTCTCTGACCGG-TAGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
183 TGCCTCTCCGACCGGCT-GAGCGCCCGCACACCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTT
* ** * *
16529272 CATTCCATGTCTAAGCCACAGTCAGACCGAAGGTTGTGGCAG
247 CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAG
16529314 TAGGACTGGC
Statistics
Matches: 664, Mismatches: 117, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
501 18 0.03
502 133 0.20
506 1 0.00
507 2 0.00
508 1 0.00
510 1 0.00
512 5 0.01
513 363 0.55
514 25 0.04
515 113 0.17
516 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (502 bp):
CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCGGACCGAAGGTTACGACAG
CAGGATCGACAACACGCAAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACC
GGCTGAGCGCCCGCACACCCATTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAAGTGGATCGGGTCGATC
CCCGACTTACGCATTATGCCTCTCCGGCTAGCTCAACGCCAACAAGATCGTTTCATGGGTTGATT
GAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGATCG
ACAGCACGCAAGGGAGGATCGGACCGATCCCCAACTTACGCATTCTA
Found at i:16529093 original size:26 final size:26
Alignment explanation
Indices: 16529063--16529115 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16529053 GTTGCCTTAG
16529063 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16529089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16529115 G
1 G
16529116 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16529461 original size:26 final size:26
Alignment explanation
Indices: 16529431--16529483 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16529421 GTTGACTTAG
* *
16529431 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
*
16529457 GCATACGAAGTGCATTCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
16529483 G
1 G
16529484 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTGCATCCCCAGTCTAA
Found at i:16530333 original size:26 final size:26
Alignment explanation
Indices: 16530296--16530346 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16530286 GTTGACTTAG
16530296 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16530322 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
16530347 CGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16531001 original size:26 final size:26
Alignment explanation
Indices: 16530965--16531017 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16530955 GTTGACTTAG
* *
16530965 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
* *
16530991 GCATACAGAGTTTATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
16531017 G
1 G
16531018 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:16531515 original size:26 final size:26
Alignment explanation
Indices: 16531465--16531517 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16531455 GTTGGCTTAG
*
16531465 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
16531491 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16531517 G
1 G
16531518 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16531932 original size:185 final size:184
Alignment explanation
Indices: 16531580--16531944 Score: 455
Period size: 185 Copynumber: 2.0 Consensus size: 184
16531570 GTTGACTTAG
* * * * *
16531580 GCATATAGAGTTCAATCCCAGTCTACGATCGGACTGAACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATATAGAGTTCAATCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAACAGCAGGATCGACA
* * * * ** *
16531645 GCGCGCAGGAGGGACCGAGCCAGGCCACAACTTGTGCATTCTACCTTTTCGGTCGGTCGAGCGCC
66 GCACGCAGGAGGGACCGAGCCAGGCCACAACTTGCGCATTCTACCTCTCCGACCGGTCGAGCACC
* *
16531710 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAA
* * * *
16531764 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAACAGTAGGATCGACA
1 GCATATAGAGTTCAATCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAACAGCAGGATCGACA
* * * * * *
16531829 GCACGCAGGGAGGGACCGGGTC-GATCCTCGACTTGCGCATTCTGCCTCTCCGACCGG-CTGAGC
66 GCACGCA-GGAGGGACCGAGCCAG-GCCACAACTTGCGCATTCTACCTCTCCGACCGGTC-GAGC
* *
16531892 ACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGT
128 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
16531945 CTAATCCCCA
Statistics
Matches: 152, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
184 64 0.42
185 88 0.58
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (184 bp):
GCATATAGAGTTCAATCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCAACAGCAGGATCGACA
GCACGCAGGAGGGACCGAGCCAGGCCACAACTTGCGCATTCTACCTCTCCGACCGGTCGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAA
Found at i:16532143 original size:26 final size:26
Alignment explanation
Indices: 16532104--16532157 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16532094 TGGGTTGACT
*
16532104 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
*
16532130 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
16532156 TA
1 TA
16532158 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:16532613 original size:158 final size:157
Alignment explanation
Indices: 16532130--16532634 Score: 525
Period size: 158 Copynumber: 3.2 Consensus size: 157
16532120 ATCCCCAGTC
* * * * *
16532130 TAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGG-TGCGATAGCTGGAT
1 TAGGCATACGA-AATTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTGCGGTAGCAGGAT
* * * *
16532193 CGGTAGCATGCTGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGA
64 CGATAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-ACCGGCTGA
* * *
16532258 GCGCCCGCACACCCATTTCGTGGGTT-AGCT
128 GCGCCCGCACGCTCGTTTCGTGGGTTGA-CT
* * * ** * * * *
16532288 TAGGCATAGGGATTTCATT-CCATGTCTAAGCCCCAG-CCAGATCAAGGGTTGTGGTAGCAGGAC
1 TAGGCATACGAAATTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT
* * * * * *
16532351 CGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTTTCCAACCGGCTC
64 CGATAGCATGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-ACCGGCTG
* *
16532416 AACGCCCGAACGCTCGTTTCGTGGGTTGACT
127 AGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
16532447 TAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCG
1 TAGGCATACGAAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCG
* * * * * *
16532512 ATAGCATGCAGGGGGGCCCGAGTCGATCCTCGACTTACGCATTCTGCCTCTCCATCCGACTGAGC
66 ATAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCA-CCGGCTGAGC
* *
16532577 GCTCGCACGCTCGTTTCATGGGTTGACT
130 GCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
16532605 TAGACATACGAAGTTCATCCCCAGTCTAAG
1 TAGGCATACGAAATTCATTCCCAGTCTAAG
16532635 CATACAGAGT
Statistics
Matches: 280, Mismatches: 58, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 8 0.03
158 140 0.50
159 128 0.46
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
TAGGCATACGAAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCG
ATAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCACCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACT
Found at i:16532788 original size:183 final size:184
Alignment explanation
Indices: 16532450--16532989 Score: 524
Period size: 183 Copynumber: 2.9 Consensus size: 184
16532440 GTTGACTTAG
* * ** *
16532450 GCATACGAAA-TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATAC-AAAGTTCATTCCCAGTCAAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCGAT
* * *
16532514 AGCATGCAGGGGGGCCCGAGTCGATCCTCGACTTACGCATTCTGCCTCTCCATCCGACTGAGCGC
65 AGCACGCAGGGGGGCCCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCATCCGACTGAGCAC
* *
16532579 TCGCACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATCCCCAGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATCCCCAGTCAAA
* * * * *
16532634 GCATACAGAGTTCATTCCCTGTCAAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGACC-AGT
1 GCATACAAAGTTCATTCCCAGTCAAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCGA-T
* * *
16532698 AGCACGCAGGGGGGACTCGA-TCGATCCCCG-CTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGC
65 AGCACGCAGGGGGG-CCCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCC-ATCCGACTGAGC
* * *
16532760 ACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAA
128 ACCCGCACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATCCCCAGTCAAA
* * * * * ** *
16532817 GCATACAAAGTTCATTCCCAGTCTAATATC-GAACC-GAGTCGAGGGTTACGGCAGCAACATCGA
1 GCATACAAAGTTCATTCCCAGTCAAAGATCAG-ACCAGA-CCGAGGGTTGCGACAGCAGGACCGA
* ** * * * * * *
16532880 CAGCACGCAGGGGGGATCAAG-CTGTTCCCCGGCTTACGCATTCTGTCTCTCCGGT-CGGCTGAG
64 TAGCACGCAGGGGGGCCCGAGTC-GATCCCCGACTTACGCATTCTGCCTCTCC-ATCCGACTGAG
* * * * * * *
16532943 CGCTCGCACACTCATTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCAT
127 CACCCGCACGCTCGTTTCATGGGTTGACTTAGACATACGA-AGTTCAT
16532990 TCCATGTTTA
Statistics
Matches: 296, Mismatches: 48, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
182 7 0.02
183 148 0.50
184 137 0.46
185 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.23
Consensus pattern (184 bp):
GCATACAAAGTTCATTCCCAGTCAAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGACCGATA
GCACGCAGGGGGGCCCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCATCCGACTGAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAGACATACGAAGTTCATCCCCAGTCAAA
Found at i:16533527 original size:196 final size:196
Alignment explanation
Indices: 16533185--16533906 Score: 761
Period size: 196 Copynumber: 3.7 Consensus size: 196
16533175 GGGTTGCGAC
* * * *
16533185 AGCAGGATCGACAGCATG-TAGGGGGGATCGGGCCGGTCCCCAACTTGTGCATTTTGCCTCTCCG
1 AGCAGGATCGACAGCATGCT-GGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTTCG
* **
16533249 GCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC
65 GCCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
* * * * *
16533314 TAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGAGATAGCAAGACCA
130 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGAGACAGCAAGACCA
16533379 GT
195 GT
* * * * *
16533381 AGTAGGATCGACAGCATGCTGAGGGGATCAGGCCGATCCCCGACTTGTGCATTCTACCTCTTCGA
1 AGCAGGATCGACAGCATGCTGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTTCGG
*
16533446 CC-AGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
66 CCGA-CTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
* * *
16533510 TAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGTGACAGCAGGACCA
130 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGAGACAGCAAGACCA
16533575 GT
195 GT
* ** * * ** * * *
16533577 AGCAGGATTGGTAGCACGCAGGGGGGATCGGGTTGATCCCCGGCTTTTGTATTCTGCCTC-TCTG
1 AGCAGGATCGACAGCATGCTGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTTC-G
* * * * *
16533641 GCCGACTGAGTGCCCGGACACTCATTTCATGGGTTAGTTTAGGCATACAGAGTTCATTCCATGTC
65 GCCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
* * * * *
16533706 TAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGTAGGACCA
130 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGAGACAGCAAGACCA
*
16533771 GC
195 GT
* * * ** * * * * * * *
16533773 AGTAAGATTGGTAGGACGCAGGGGGGATCGGGTCGATCCTCGGCTT-TCGTATTCTGCCTC-TCT
1 AGCAGGATCGACAGCATGCTGGGGGGATCGGGCCGATCCCCGACTTGT-GCATTCTGCCTCTTC-
* * * * * * ** * * ** *
16533836 GGCCGGCTAAGCGTCCGTACACTTGTTTCATGGGTTGGTTTAGGCATATGGAGTTCATTCCATCT
64 GGCCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
16533901 CTAAGC
129 CTAAGC
16533907 CCCAGTCGGA
Statistics
Matches: 457, Mismatches: 64, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
195 4 0.01
196 451 0.99
197 2 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (196 bp):
AGCAGGATCGACAGCATGCTGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTTCGG
CCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGAGACAGCAAGACCAG
T
Found at i:16533537 original size:26 final size:26
Alignment explanation
Indices: 16533487--16533539 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16533477 GTTGGCTTAG
*
16533487 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
16533513 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16533539 G
1 G
16533540 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16534114 original size:26 final size:26
Alignment explanation
Indices: 16534064--16534114 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16534054 TTCACTTAGG
**
16534064 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAAACTAAA
*
16534090 CATACGGAGTTCATTCCCAAACTAA
1 CATACGGAGTTCATCCCCAAACTAA
16534115 GATCGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAAACTAAA
Found at i:16536181 original size:158 final size:157
Alignment explanation
Indices: 16535859--16536203 Score: 438
Period size: 158 Copynumber: 2.2 Consensus size: 157
16535849 ATCCCCAGTC
* * * * *
16535859 TAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCG
1 TAAGCATACGAAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCG
* * * * * * * **
16535924 ACAGCACGCAGCGGGAACGTGTCGATCCCCAGCTTACGCATTCTACCTCTTCGGTCGGCTGAGTG
66 ACAGCACACAACGGGAACGGGTCGATCCCCAACTTACGCATTCTACCTCTCCGGCCGACTGAGCA
*
16535989 CCCGCATGCCCATTTTGTGGGTTGGCT
131 CCCGCACGCCCATTTTGTGGGTTGGCT
* * *
16536016 TAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGTAGGATCG
1 TAAGCATACGAAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCG
* ** *
16536081 ACAGCACATAACGGGGATTGGGTCGGTCCCCAACTTACGCATTCTACCTCTCCGGCCGACTGAGC
66 ACAGCACACAAC-GGGAACGGGTCGATCCCCAACTTACGCATTCTACCTCTCCGGCCGACTGAGC
***
16536146 ACCCGCACGCTTGTTTTGTGGGTTGGCT
130 ACCCGCACGCCCATTTTGTGGGTTGGCT
* *
16536174 TAAGCATACGAAGTTCATTCCATGCCTAAG
1 TAAGCATACGAAGTTCATTCCCTGTCTAAG
16536204 CATACGGAGT
Statistics
Matches: 158, Mismatches: 29, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
157 66 0.42
158 92 0.58
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
TAAGCATACGAAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCG
ACAGCACACAACGGGAACGGGTCGATCCCCAACTTACGCATTCTACCTCTCCGGCCGACTGAGCA
CCCGCACGCCCATTTTGTGGGTTGGCT
Found at i:16536580 original size:26 final size:25
Alignment explanation
Indices: 16536545--16536596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
16536535 GTTAGCTTAG
16536545 GCATCGGAGTTCA-TCCCAAGTCTAA
1 GCATCGGAGTTCATTCCC-AGTCTAA
16536570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
16536596 G
1 G
16536597 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 4 0.16
26 17 0.68
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:16537070 original size:158 final size:155
Alignment explanation
Indices: 16536570--16537061 Score: 479
Period size: 159 Copynumber: 3.1 Consensus size: 155
16536560 CCAAGTCTAA
*
16536570 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCGGATCGAGGGTTGTGACAGTAAGATCGACA
* * * *
16536635 GCACGTAG-GGGGATCGGGCTGATCCCTGTCTTTCGCATTCTGCCTCTTCGACCGACTGAGCACC
65 GCACGCAGAGGGGATCGGGTTGATCCCTGACTTGCGCATTCTGCCTCTTCGACCGACTGAGCACC
*
16536699 CGTACACTCATTTCATGGGTTGGCTTAG
130 C--ACGCTCATTTCATGGGTTGGCTTAG
* * * * *
16536727 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGATCGAGGGTTGTGGCAGCAAGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATAGACCGGATCGAGGGTTGTGACAGTAAGATCGA
** * * * * * * * * *
16536790 CAGTTCGCAGAGGGGGATCGGGTCGATCCCTGGCTTGCACATTATGCCTTTTCGGCTGGCTCAGC
63 CAGCACGCAGA-GGGGATCGGGTTGATCCCTGACTTGCGCATTCTGCCTCTTCGACCGACTGAGC
* ** ** *
16536855 ACCTGAACGCTTGTTTCATGGGTTCACTCAG
127 ACC--CACGCTCATTTCATGGGTTGGCTTAG
* ** * *
16536886 GCATATGGAGCTT-ATTCCCAGTCTAAGATAGGATTGGATCGAGGGTTATGATAGTAAGATCGAC
1 GCATACGGAG-TTCATTCCCAGTCTAAGATA-GACCGGATCGAGGGTTGTGACAGTAAGATCGAC
* ** * * * *
16536950 AGCACGCGGAGGGGCCCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAACAC
64 AGCACGCAGAGGGGATCGGGTTGATCCCTGACTTGCGCATTCTGCCTCTTCGACCGACTGAGCAC
16537015 CCACTGGCTCATTTCATGGGTTGGCTTAG
129 CCAC--GCTCATTTCATGGGTTGGCTTAG
16537044 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16537062 ATATCTAAGC
Statistics
Matches: 260, Mismatches: 61, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
156 5 0.02
157 59 0.23
158 76 0.29
159 115 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGACCGGATCGAGGGTTGTGACAGTAAGATCGACAG
CACGCAGAGGGGATCGGGTTGATCCCTGACTTGCGCATTCTGCCTCTTCGACCGACTGAGCACCC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:16537952 original size:341 final size:342
Alignment explanation
Indices: 16537214--16537964 Score: 833
Period size: 343 Copynumber: 2.2 Consensus size: 342
16537204 CCTTTCCGAT
* * *
16537214 TGGCTGAGCGCCCTTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA-CCCCAGTCTA
1 TGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
16537278 AGCTCACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGCAGTAGGATCGAG
66 AGCTCACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAAGGTTACGACAGCAGGATCGAG
* * * * * * *
16537343 AGCATGCAGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGACCGCC
131 AGCACGCAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGCTCGGCTGA-CGCC
* * *
16537408 ACCTGCACACCTGCTTCGTGGGTTGGCTTAGGCCTAGGGAGTTCATTCCATCTCTAAGCCCCAAC
195 ACCTGCACACCTGCTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATCTCTAAGCCCCAAC
* * *
16537473 CAGATCGAGGGTAGTGGCAGCGGGATCAGCACCACGTAAAGGGGGACCGAGCCATCCCCGACTTG
260 CAGATCGAGGGTAGTAGCAACGGGATCAGCACCACG-AAAGGGGCACCGAGCCATCCCCGACTTG
* **
16537538 CGCATTCTACCTCTTTGGC
324 CGCATTATACCTCTCAGGC
** * * * *
16537557 CAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGAAGTTCATCCCCAGTCTA
1 TGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
16537622 AGCAT-ACGGAGTTCATTCCCAGTCTACGATCGAA-TCAGACC-AAGGTTGCGACAGCAGGATTG
66 AGC-TCACGGAGTTCATTCCCAGTCTAAGATCAAACT-AGACCGAAGGTTACGACAGCAGGATCG
**
16537684 -GCAGCACGCAGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACT-GGCTGA-
129 AG-AGCACGCAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCG-CTCGGCTGAC
** ** * *
16537746 GCGGCC-GCATTCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
192 GCCACCTGCACACCTGCTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATCTCTAAGCCCC
* * * * * *
16537810 AGCCGGATTGAGGGTTGTAGCAACGGGACCTACAGCA-CAC-AGAA-GGGCATCGGGCCGATCCC
257 AACCAGATCGAGGGTAGTAGCAACGGGA--T-CAGCACCACGA-AAGGGGCACCGAGCC-ATCCC
* * *
16537872 CGGCTTGTGCATTATGCCTCTCCAGG-
317 CGACTTGCGCATTATACCTCT-CAGGC
* * *
16537898 TGGCTCAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1 TGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
16537963 AG
66 AG
16537965 ATCAGACCGG
Statistics
Matches: 338, Mismatches: 59, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
340 83 0.25
341 86 0.25
342 7 0.02
343 116 0.34
344 45 0.13
345 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (342 bp):
TGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCTCACGGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAAGGTTACGACAGCAGGATCGAG
AGCACGCAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGCTCGGCTGACGCCA
CCTGCACACCTGCTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATCTCTAAGCCCCAACC
AGATCGAGGGTAGTAGCAACGGGATCAGCACCACGAAAGGGGCACCGAGCCATCCCCGACTTGCG
CATTATACCTCTCAGGC
Found at i:16538494 original size:26 final size:26
Alignment explanation
Indices: 16538461--16538516 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16538451 TGGGTTGACA
16538461 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
16538487 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
16538513 TAAG
1 TAAG
16538517 ATCGGTCCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:16539275 original size:26 final size:26
Alignment explanation
Indices: 16539239--16539291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16539229 GCTAGCTTAG
16539239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16539265 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16539291 G
1 G
16539292 ATCAAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16539616 original size:25 final size:26
Alignment explanation
Indices: 16539582--16539633 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16539572 GTTGGCTTAG
16539582 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16539607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16539633 G
1 G
16539634 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16540332 original size:26 final size:26
Alignment explanation
Indices: 16540303--16540355 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16540293 GTTGAATTAG
*
16540303 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAATCTAA
* * *
16540329 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAATTCATCCCCAATCTAA
16540355 G
1 G
16540356 ATCGGATTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAATCTAA
Found at i:16540986 original size:184 final size:185
Alignment explanation
Indices: 16540664--16541061 Score: 549
Period size: 184 Copynumber: 2.2 Consensus size: 185
16540654 TGTCTAAGCG
* * *
16540664 TACGGAGTTCAT-TCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGTAGCAAGACTAGCAGTA
1 TACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTACAGTAGCAAGACTAGCAGCA
* * *
16540728 GGATCGATAGCATGCAGGGGTGGATCGAGTCGATCCCAAGCTTTCGCATTCTACCTCTCCAGCTG
66 GGATCGACAGCATGCAGGGGTAGATCGAGTCGATCCCAAGCTTTCGCATTCTACCTCTCCAGCCG
16540793 GCCTCTCCGGCCTACTGAGCACCCGCACGCTCGTTTCATGG-GTTGACTTAGGCA
131 GCCTCTCCGGCCTACTGAGCACCCGCACGCTCGTTTCATGGTGTTGACTTAGGCA
* **
16540847 TACGAAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTAGTAGCAAGACTAGCAGCA
1 TACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTACAGTAGCAAGACTAGCAGCA
* * *
16540912 GGATCGACAGCATGTAGGGGTAGA-CTGAG-CTGAT-CCACGACTTTCGCATTC-AGCCTCT-CT
66 GGATCGACAGCATGCAGGGGTAGATC-GAGTC-GATCCCAAG-CTTTCGCATTCTA-CCTCTCCA
* **
16540972 GACCGGCCTCTCCGGCCTACTGAGCGCCCGCACGCTCGTTTTGTGGTGTTGACTTAGGCA
127 G-CCGGCCTCTCCGGCCTACTGAGCACCCGCACGCTCGTTTCATGGTGTTGACTTAGGCA
* *
16541032 TACGGAGCTCATCCCCAGTGTAAGATCAGA
1 TACGGAGTTCATCCCCAGTCTAAGATCAGA
16541062 TCGAGCTGAG
Statistics
Matches: 190, Mismatches: 18, Indels: 12
0.86 0.08 0.05
Matches are distributed among these distances:
183 20 0.11
184 130 0.68
185 40 0.21
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
TACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTACAGTAGCAAGACTAGCAGCA
GGATCGACAGCATGCAGGGGTAGATCGAGTCGATCCCAAGCTTTCGCATTCTACCTCTCCAGCCG
GCCTCTCCGGCCTACTGAGCACCCGCACGCTCGTTTCATGGTGTTGACTTAGGCA
Found at i:16541769 original size:26 final size:26
Alignment explanation
Indices: 16541739--16541791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16541729 GTTGAACTAG
16541739 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16541765 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16541791 G
1 G
16541792 ATCGGATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16542148 original size:159 final size:157
Alignment explanation
Indices: 16541765--16543267 Score: 783
Period size: 159 Copynumber: 9.2 Consensus size: 157
16541755 CCCAGTCTAA
* * ** *
16541765 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATAAGA-TCGAGGGTTATGGCAG-TAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACT-GAGGGTTGTGGCAGCT-GGATCG
* *
16541827 ATAGCACGCAGGGGGACCGGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTT-C-GATCGGCTGA
63 ACAGCACGCAGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCT-GGCTGA
* * *
16541889 GCGCCCGTACGCCCGTTTCATGGGTTGGCTTAG
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
16541922 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGA-TCGAGGGTTGTGGCAG-TGAGA-CT
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCAGACT-GAGGGTTGTGGCAGCTG-GATC-
* * **
16541983 GGCAGCACGCAGAGGGAGATCGGGCTGATCCCCGGCTTGCATATTCTGCCTTTCCGGCTGGCTGA
62 GACAGCACGCAG-GGG-GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCTGGCTGA
* * *
16542048 GCACCCACACGCTTGTTTCGTGGGTTGGCTTAG
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16542081 GCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGACA
* * * * * * * * *
16542146 GCACGTAGGGGGACCGAGCCGATCCTCGACTTGCACATTCTGCCTCTT-CGGCCGGTTGAACGCC
66 GCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCTGGCTGAGCGCC
* * *
16542210 CGCACGGATGCTCATTTCATGGGTTGGCTTAA
130 CGCAC----GCTCGTTTCGTGGGTTGGCTTAG
** * * *
16542242 GCATACGGAGTTCATTCTCA-GTCTAAGATTGGACCGGACGGAGGGTTACGGCAGCAGGACCAGC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCAGACTGAGGGTT------G-TGG--CAGC
* * ** * * * * *
16542306 AATAGGATTGACAGCACGTAGGGGGACCAAGCTGATCCCCGACTTGCACATTCTACCTCTCTGGC
56 --T-GGATCGACAGCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCGGC
* * * *
16542371 CGTCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
118 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
16542411 GCATACAGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACTGAGGGTTGTGGCAGCAGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACTGAGGGTTGT------------GGC
* * * * *
16542475 AGCGGGATCGACAGCACGCAGATGGGGACCGGGCTGATCCCTGGCTTACGTATTATGCCTCTTCG
53 AGCTGGATCGACAGCACGCAG--GGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCT-TTC-
* * ** *
16542540 ATCGGCCTCTCCGGTTGACTGAGCACCCGCACGTTCGTTTTATGGGTTGACTTAG
114 --CGG---CT---G--G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
16542595 GCATACGGAGTTCA-TCCCTAGTCTAAGCATGCAGAGTTCATTCCCAGTCT-AGGATCGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAG-AT-C--AG---A---CCAGACTGAGGGT-TG-T-GG
* * * ** ** * * * *
16542658 ACCGAG-T-GTTGCAACAGCATGCAGGGGGATTGGGCCAATCCCTGGCTCGTGCATTCTGCCTCT
52 --C-AGCTGGAT-CGACAGCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTT
* *
16542721 CCGGCCGGCTGAGCGCCCGCACGC-CTGTTTCGCGGGTTGGCTTAG
113 CCGGCTGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * *
16542766 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCTGA-TCGAGGGTTGTGGCAGCTGGA-CCA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACT-GAGGGTTGTGGCAGCTGGATCGA
** * * * * * * * * * *
16542828 GCAGCACAAAAAGGGCGATCGGGCCGATCCCCGACTTACGCATTATGCATCTCCGGCTTGCTCAG
64 -CAGCAC--GCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCTGGCTGAG
*
16542893 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
16542925 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGACGGTTATGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGAC
* * * * * * * *
16542989 GGCACACAGAGGGGGACCGAGCTGATCCCCGGCTAGTGCATTATACCTCTT-CGG-TCGGCTCAG
65 AGCACGC--AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCT-GGCTGAG
* * * * *
16543052 AGCCCGAATGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
16543084 GCATACGGAGTTCATTCCCA-GTCTAAAATCATACCAGACTGAGGGTTGTGGCAG-TAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCT-GGATCGA
* * * * * *
16543147 CAGCACGTAGGGGGACCGGG-TCGATCCCCCGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
64 CAGCACGCAGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTTTCCGGCTGGCTGAGCG
* * *
16543211 CCCGTACACTCGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
16543241 GCATATGGAGTTCATTCTATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16543268 CATATGGAGT
Statistics
Matches: 1036, Mismatches: 209, Indels: 202
0.72 0.14 0.14
Matches are distributed among these distances:
156 13 0.01
157 189 0.18
158 17 0.02
159 363 0.35
160 16 0.02
161 62 0.06
162 6 0.01
163 1 0.00
167 1 0.00
168 6 0.01
169 72 0.07
170 6 0.01
171 78 0.08
172 13 0.01
173 65 0.06
174 3 0.00
175 2 0.00
177 1 0.00
178 1 0.00
180 3 0.00
181 1 0.00
183 6 0.01
184 82 0.08
185 3 0.00
186 12 0.01
187 3 0.00
191 1 0.00
193 4 0.00
194 5 0.00
195 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCTGGATCGACA
GCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16542457 original size:169 final size:170
Alignment explanation
Indices: 16542137--16542492 Score: 423
Period size: 169 Copynumber: 2.1 Consensus size: 170
16542127 TGTGGCAGCT
* * *
16542137 GGATCGACAGCACGTAGGGGGACCGAGCCGATCCTCGACTTGCACATTCTGCCTCTTCGGCCGGT
1 GGATCGACAGCACGTAGGGGGACCAAGCCGATCCCCGACTTGCACATTCTACCTCTTCGGCCGGT
*
16542202 TGAACGCCCGCACGGATGCTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCTCAGTCTA
66 TGAACGCCCGCAC-G--GCTCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCTCAGTCTA
****
16542267 AGATTGGACCGGACGGAGGGTTACGGCAGCAGGACCAGCAATA
128 AGACCCAACCGGACGGAGGGTTACGGCAGCAGGACCAGCAATA
* *
16542310 GGATTGACAGCACGTAGGGGGACCAAGCTGATCCCCGACTTGCACATTCTACCTC-TCTGGCC-G
1 GGATCGACAGCACGTAGGGGGACCAAGCCGATCCCCGACTTGCACATTCTACCTCTTC-GGCCGG
** * *
16542373 TCTGAGTGCCCGCAC-GCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTC-CATGTCTA
65 T-TGAACGCCCGCACGGCTCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCTCA-GTCTA
* * * ** * ***
16542436 AGCCCCAATCGGACTGAGGGTTGTGGCAGCAGGACCGGCAGCG
128 AGACCCAACCGGACGGAGGGTTACGGCAGCAGGACCAGCAATA
16542479 GGATCGACAGCACG
1 GGATCGACAGCACG
16542493 CAGATGGGGA
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
168 2 0.01
169 85 0.54
172 4 0.03
173 65 0.42
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (170 bp):
GGATCGACAGCACGTAGGGGGACCAAGCCGATCCCCGACTTGCACATTCTACCTCTTCGGCCGGT
TGAACGCCCGCACGGCTCATTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCTCAGTCTAAGA
CCCAACCGGACGGAGGGTTACGGCAGCAGGACCAGCAATA
Found at i:16543290 original size:26 final size:26
Alignment explanation
Indices: 16543241--16543293 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16543231 GTTGGCTTAG
*
16543241 GCATATGGAGTTCATTCTATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
16543267 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATATGGAGTTCATT-CCATGTCTAA
16543293 G
1 G
16543294 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:16544283 original size:159 final size:157
Alignment explanation
Indices: 16543929--16544625 Score: 604
Period size: 159 Copynumber: 4.4 Consensus size: 157
16543919 TGGTCGGCTG
* * * * **
16543929 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* ** * * * * *
16543992 CAGACCAGATCGAGGGTTACGGCAGCAGGATCGATAGCACGTAG-GGGGGATCGGG-CTGATCCC
65 CA-ACCGGATCGAGGGTTGTGGCAGCA-GACCG-CAGCACGCAGAGGGGGACCGGGTC-GATCCT
** * * * *
16544055 CAGCTTGCGCATT-TCACCTCTCCGGCCGGCTG
126 TGGCTTGCGCATTAT-GCCTCTTCGGCCAGCTC
* * *
16544087 AGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * *
16544152 ATCCGGATCGAGGGTTGTGGCAGCTAGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCTTTGG
66 AACCGGATCGAGGGTTGTGGCAGC-AGACC-GCAGCACGCAGAGGGGGACCGGGTCGATCCTTGG
* * **
16544217 TTTGTGCATTATGCCTCTTCGGCTTGCTC
129 CTTGCGCATTATGCCTCTTCGGCCAGCTC
* * *
16544246 AGTGCCCGCAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * * * *
16544311 ACCCGGATCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCATAGGGGGACCGGGTCAATCCCTGG
66 AACCGGATCGAGGGTTGTGGCAGC-AGAC-CGCAGCACGCAGAGGGGGACCGGGTCGATCCTTGG
*
16544376 CTTACGCATTATGCCTCTTCGGCCAGCTC
129 CTTGCGCATTATGCCTCTTCGGCCAGCTC
* * ** * * * **
16544405 AGCGTCCGTACGCTTGTTTCAG-GGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGAT
1 AGCGCCCGCACGCCCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCC
* * * *
16544468 CAAACCGGACCGAGGGTTAG-GGCAGCAGGATCGACAGCATGCAG-GGAGGGACCGGGTCGATCC
64 CCAACCGGATCGAGGGTT-GTGGCAGCA-GACCG-CAGCACGCAGAGG-GGGACCGGGTCGATCC
** * * * * *
16544531 TCAGCTTGCACATTCTGCCTC-TCTGGCCGGTTG
125 TTGGCTTGCGCATTATGCCTCTTC-GGCCAGCTC
* *
16544564 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16544626 ATATGGAGTT
Statistics
Matches: 438, Mismatches: 84, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 89 0.20
159 339 0.77
160 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AACCGGATCGAGGGTTGTGGCAGCAGACCGCAGCACGCAGAGGGGGACCGGGTCGATCCTTGGCT
TGCGCATTATGCCTCTTCGGCCAGCTC
Found at i:16544634 original size:26 final size:26
Alignment explanation
Indices: 16544598--16544650 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16544588 GTTGGCTTAG
16544598 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16544624 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16544650 G
1 G
16544651 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16545835 original size:26 final size:26
Alignment explanation
Indices: 16545806--16545858 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16545796 GTTGGCTTAG
16545806 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16545832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16545858 G
1 G
16545859 ATTGGGCCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16546465 original size:159 final size:160
Alignment explanation
Indices: 16546083--16547878 Score: 831
Period size: 158 Copynumber: 11.0 Consensus size: 160
16546073 ACCGGCAGCT
* * * * * * *
16546083 GGATCGACAGCACGCAAAGGGGGATCGGACTGATCCCTGACTTGTGCATTTTGCCTCTCC-GGTC
1 GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGGTC
* * * * * *
16546147 GACTGAGCGCCCGAATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
66 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCAT-TCCATGTCTA
** * * * * **
16546211 AG-ATCGGACTGGACCAAGGGTT-TCGGTAGTA
130 AGCCCCAGTC-GAACCGAGGGTTGT-GGTAGCG
* * * * * *
16546242 GGATCGACCGTACGTA-AGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCT-CTGGTC
1 GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGGTC
* * * * *
16546305 GGCTGAGTGCCTGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAT
66 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * *
16546370 GGCCCAGCCGAACCGAGGATTGTGGCAGTG
131 GCCCCAGTCGAACCGAGGGTTGTGGTAGCG
* * *
16546400 GGACCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTC-AGTC
1 GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGGTC
* * * * * *
16546464 GGCTCAGCGCCCACATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTA
66 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTA
** * * * * *
16546528 AG-ATCGGATCAAACCGAAGGTTGCGGTAGCA
130 AGCCCCAG-TCGAACCGAGGGTTGTGGTAGCG
** * * * * * * * *
16546559 AAATTGACAGCACGCAG-GGGGGACTTGGTC-GATCCCCGGCTGGCCCATTCTGCCTCTCC-GGC
1 GGATCGGCAGCACGCAGAGGGGGA-TCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGGT
* * * * * *
16546621 CAG-TCGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT-GCGAGTTCATTCCATGTCT
65 CGGCT-GAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCT
* *
16546684 AAGCCCCAGTCGGACTGAGGGTTGTGGTAGCAG
129 AAGCCCCAGTCGAACCGAGGGTTGTGGTAGC-G
* * * * *
16546717 GACTGACAGCGGGATCAACAGCACACAGAGGTGGATCGAGCTGATCCCCGGCTTGCACATTATGC
1 G---G--ATC-GG-----CAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGC
* ** * * * *
16546782 CTCTCCAACCGGCCTCTCCGGTTGACTGAGTACCCGTATGCTGATTCCGTGGGTTCACTTAGGCA
55 CTCT-C--CTGG----T-C-G--G-CTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCA
* * * *
16546847 TAGGGAGTTCGTTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTG
108 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGTAGCG
* ** ** * *
16546900 GGATCGGTAGCACATAGAGGGGGATC-GAATCGATCCTCGGCTTGCGCATTATGCCACT-CTGGT
1 GGATCGGCAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCTGGT
* * * *
16546963 TGGCTCAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCA-GTCT
65 CGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCT
** * * * *
16547026 AAG-ATCAGATCGGACTGAGGGTTGAGGTAGCA
129 AAGCCCCAG-TCGAACCGAGGGTTGTGGTAGCG
* * * * * *
16547058 GGATCGACAGCACGCAGA-GGGGATCAGG-TCAGTCCTCGACTTGCGCATTCTGCCTCTCCT-GT
1 GGATCGGCAGCACGCAGAGGGGGATCGGGCTGA-TCCCCGGCTTGCGCATTATGCCTCTCCTGGT
* ** * * * *
16547120 CGGCTGAGCGCCTGCCCGCTCATTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCTTGTCTA
65 CGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTA
* *
16547185 AGCCCCAG-CCAGACCGAGGGTTATGGTAGCAGGACCGACAG
130 AGCCCCAGTCGA-ACCGAGGG-T-T-GT-G--GTA--G-C-G
* * * * * * *
16547226 CAGGATTGGCAGCACACAGAGAGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCAGT
1 --GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATG-C-CT-C--T
** * * * * * *
16547291 CAACCTCTTCGACCGGCTGAGCGCTCGTAAGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTT
59 ----C-C-T-GGTCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTT
* ** * ** * *
16547356 CATCCCCA-GTCTAAGCATACGAAGTTC-ATTCTC-A--GTCTAAGCATACGAG
117 CAT-TCCATGTCTAAGC---CCCAG-TCGA-AC-CGAGGGT-TGTG-GTA-GCG
* * * * *
16547405 GGTTACGGTAGCACGCAG-GGGGGA-CTGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCC-GG
1 GGAT-CGGCAGCACGCAGAGGGGGATC-GGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGG
* * * * * * * * * * *
16547467 CCGACTCAGTGCCTGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
64 TCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCT
* ** *
16547532 AAGCCCCAGCCGGGCCGAGGGTTGTGGTAGTG
129 AAGCCCCAGTCGAACCGAGGGTTGTGGTAGCG
* ** * * * *
16547564 GGATCGACAGCACATAGAGGGGGATCGGG-TCGATCCTCGGCTTGCGTATTATGCCACTCC-AGT
1 GGATCGGCAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCTGGT
* * * * * * * * *
16547627 TGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGAGTTTATTCCAAGCCTA
65 CGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTA
** * * * * *
16547691 AG-ATCAGACGGGACTGAGGGTTGAGGTAGCA
130 AGCCCCAGTC-GAACCGAGGGTTGTGGTAGCG
* * * ** * * * *
16547722 GGATTGACAGCACGTAG-GGGGGATCAAGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCT-GCC
1 GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGGTC
* * * * * * * * *
16547785 GGTTGAGCGCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGACTTCATTCCTTGTCTAA
66 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAA
*
16547850 GCCCCAGTCGGACCGAGGGTTGTGGTAGC
131 GCCCCAGTCGAACCGAGGGTTGTGGTAGC
16547879 AGGACCGACA
Statistics
Matches: 1235, Mismatches: 302, Indels: 201
0.71 0.17 0.12
Matches are distributed among these distances:
156 4 0.00
157 189 0.15
158 349 0.28
159 266 0.22
160 12 0.01
161 6 0.00
162 4 0.00
163 4 0.00
164 60 0.05
166 1 0.00
167 2 0.00
168 4 0.00
169 12 0.01
170 44 0.04
171 23 0.02
172 44 0.04
173 3 0.00
174 4 0.00
175 2 0.00
176 3 0.00
177 31 0.03
178 12 0.01
179 2 0.00
180 2 0.00
181 3 0.00
182 3 0.00
183 34 0.03
184 99 0.08
185 4 0.00
186 1 0.00
187 3 0.00
188 3 0.00
189 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
GGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCTGGTC
GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAGTCGAACCGAGGGTTGTGGTAGCG
Found at i:16546995 original size:500 final size:500
Alignment explanation
Indices: 16546329--16547288 Score: 1277
Period size: 500 Copynumber: 1.9 Consensus size: 500
16546319 ATGCCCATTT
** * *
16546329 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGGCCCAGCCGAACCGAGGATTGTG
1 CGTGGGTTCACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGATTGTG
* * *
16546394 GCAGTGGGACCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTT
66 GCAGTGGGACCGGCAGCACACAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCACTT
* * *
16546459 CAGTCGGCTCAGCGCCCACATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAA
131 CAGTCGGCTCAGCACCCACATGCTCATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAA
* * * * *
16546524 TCTAAGATCGGATCAAACCGAAGGTTGCGGTAGCAAAATTGACAGCACGCAGGGGGGA-CTTGGT
195 TCTAAGATCAGATCAAACCGAAGGTTGAGGTAGCAAAATCGACAGCACGCAGAGGGGATC-AGGT
* * * *
16546588 C-GATCCCCGGCTGGCCCATTCTGCCTCTCCGGCCAG-TCGAGTGCCCGCACGCTCGTTTCGTGG
259 CAG-TCCCCGACTGGCCCATTCTGCCTCTCCGGCCGGCT-GAGCGCCCGCACGCTCATTTCGTGG
* * * * * *
16546651 GTTGGCTTAGGCATGC-GAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGC
322 GTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGC
* * *
16546715 AGGACTGACAGCGGGATCAACAGCACACAGAG-GTGGATCGAGCTGATCCCCGGCTTGCACATTA
387 AGGACCGACAGCAGGATCAACAGCACACAGAGAG-GGACCGAGCTGATCCCCGGCTTGCACATTA
16546779 TGCCTCTCCAACCGGCCTCTCCGGTTGACTGAGTACCCGTATGCTGATTC
451 TGCCTCTCCAACCGGCCTCTCCGGTTGACTGAGTACCCGTATGCTGATTC
* * * *
16546829 CGTGGGTTCACTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTG
1 CGTGGGTTCACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGATTGTG
* * * * *
16546894 GCAGTGGGATCGGTAGCACATAGAGGGGGATCGA-ATCGATCCTCGGCTTGCGCATTATGCCAC-
66 GCAGTGGGACCGGCAGCACACAGAGGGGGATCGAGCT-GATCCCCGGCTTGCGCATTATGCCACT
* * *
16546957 TCTGGTTGGCTCAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCA
130 TC-AGTCGGCTCAGCACCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCA
* ** * * **
16547022 GTCTAAGATCAGATCGGACTGAGGGTTGAGGTAGCAGGATCGACAGCACGCAGAGGGGATCAGGT
194 ATCTAAGATCAGATCAAACCGAAGGTTGAGGTAGCAAAATCGACAGCACGCAGAGGGGATCAGGT
* * * * * * *
16547087 CAGTCCTCGACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCGCCTGCCCGCTCATTTCGTGGGT
259 CAGTCCCCGACTGGCCCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
*
16547152 TGGCTTAGGCATACGGACTTCATTCCTTGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGCAG
324 TGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGCAG
*** *
16547217 GACCGACAGCAGGATTGGCAGCACACAGAGAGGGACCGAGCTGATCCCTGGCTTGCACATTATGC
389 GACCGACAGCAGGATCAACAGCACACAGAGAGGGACCGAGCTGATCCCCGGCTTGCACATTATGC
16547282 CTCTCCA
454 CTCTCCA
16547289 GTCAACCTCT
Statistics
Matches: 394, Mismatches: 59, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
499 130 0.33
500 263 0.67
501 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (500 bp):
CGTGGGTTCACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGATTGTG
GCAGTGGGACCGGCAGCACACAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCACTT
CAGTCGGCTCAGCACCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAAT
CTAAGATCAGATCAAACCGAAGGTTGAGGTAGCAAAATCGACAGCACGCAGAGGGGATCAGGTCA
GTCCCCGACTGGCCCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
GCTTAGGCATACGGACTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGCAGGA
CCGACAGCAGGATCAACAGCACACAGAGAGGGACCGAGCTGATCCCCGGCTTGCACATTATGCCT
CTCCAACCGGCCTCTCCGGTTGACTGAGTACCCGTATGCTGATTC
Found at i:16547374 original size:26 final size:26
Alignment explanation
Indices: 16547352--16547403 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16547342 AGGCATATGG
16547352 AGTTCATCCCCAGTCTAAGCATACGA
1 AGTTCATCCCCAGTCTAAGCATACGA
* *
16547378 AGTTCATTCTCAGTCTAAGCATACGA
1 AGTTCATCCCCAGTCTAAGCATACGA
16547404 GGGTTACGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATACGA
Found at i:16547578 original size:664 final size:664
Alignment explanation
Indices: 16546839--16548060 Score: 1975
Period size: 664 Copynumber: 1.8 Consensus size: 664
16546829 CGTGGGTTCA
* *
16546839 CTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGAT
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAT
** **
16546904 CGGTAGCACATAGAGGGGGATCGAATCGATCCTCGGCTTGCGCATTATGCCACTCTGGTTGGCTC
66 CGACAGCACATAGAGGGGGATCGAATCGATCCTCGGCTTGCGCATTATGCCACTCCAGTTGGCTC
* * *
16546969 AGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAG
131 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCAAGCCTAAGATCAG
* * *
16547034 ATC-GGACTGAGGGTTGAGGTAGCAGGATCGACAGCACGCAGAGGGGATCAGGTCAGTCCTCGAC
196 A-CGGGACTGAGGGTTGAGGTAGCAGGATCGACAGCACGCAGAGGGGATCAAGCCAGTCCCCGAC
* *
16547098 TTGCGCATTCTGCCTCTCCTGTCGGCTGAGCGCCTGCCCGCTCATTTCGTGGGTTGGCTTAGGCA
260 TTGCGCATTCTGCCTCTCCTGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCA
16547163 TACGGACTTCATTCCTTGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGCAGGACCGACAGCA
325 TACGGACTTCATTCCTTGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGCAGGACCGACAGCA
16547228 GGATTGGCAGCACACAGAGAGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCC-AGTC
390 GGATTGGCAGCACACAGAGAGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCGA-TC
* * *
16547292 AACCTCTTCGACCGGCTGAGCG-CTCGTAAGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTT
454 AACCTCTTCAACCGGCTGAGCGCCT-GTAAGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTT
*
16547356 CATCCCCA-GTCTAAGCATACGAAGTTCATTCTCAGTCTAAGCATACGAGGGTTACGGTAGCACG
518 CAT-CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGCATACGAGGGTTACGGTAGCACG
16547420 CAGGGGGGACTGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTCAGTGCCTGTAC
582 CAGGGGGGACTGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTCAGTGCCTGTAC
16547485 GCCCGTTTCATGGGTTGG
647 GCCCGTTTCATGGGTTGG
* *
16547503 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGGCCGAGGGTTGTGGTAGTGGGAT
1 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAT
** *
16547568 CGACAGCACATAGAGGGGGATCGGGTCGATCCTCGGCTTGCGTATTATGCCACTCCAGTTGGCTC
66 CGACAGCACATAGAGGGGGATCGAATCGATCCTCGGCTTGCGCATTATGCCACTCCAGTTGGCTC
* *
16547633 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTTATTCCAAGCCTAAGATCAG
131 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCAAGCCTAAGATCAG
* * * * *
16547698 ACGGGACTGAGGGTTGAGGTAGCAGGATTGACAGCACGTAGGGGGGATCAAGCCGGTCCCCGGCT
196 ACGGGACTGAGGGTTGAGGTAGCAGGATCGACAGCACGCAGAGGGGATCAAGCCAGTCCCCGACT
* * *
16547763 TGCGCATTCTGCCTCTCCTGCCGGTTGAGCGCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCAT
261 TGCGCATTCTGCCTCTCCTGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* * *
16547828 ACGGACTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCAG
326 ACGGACTTCATTCCTTGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGCAGGACCGACAGCAG
* * *
16547893 GATTGGCAGCACACAGAGGGGGACCGGGCTGATCCCTGGCTTGCACATTATGCCTCTCCGATCGA
391 GATTGGCAGCACACAGAGAGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCGATCAA
* * * *
16547958 CCTCTTCAACTGGTTGAGCGCCTGTAAGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCAT
456 CCTCTTCAACCGGCTGAGCGCCTGTAAGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCAT
* *
16548023 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
521 CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
16548061 ATAAGACCAG
Statistics
Matches: 509, Mismatches: 45, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
663 4 0.01
664 502 0.99
665 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (664 bp):
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGAT
CGACAGCACATAGAGGGGGATCGAATCGATCCTCGGCTTGCGCATTATGCCACTCCAGTTGGCTC
AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCAAGCCTAAGATCAG
ACGGGACTGAGGGTTGAGGTAGCAGGATCGACAGCACGCAGAGGGGATCAAGCCAGTCCCCGACT
TGCGCATTCTGCCTCTCCTGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
ACGGACTTCATTCCTTGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGCAGGACCGACAGCAG
GATTGGCAGCACACAGAGAGGGACCGAGCTGATCCCTGGCTTGCACATTATGCCTCTCCGATCAA
CCTCTTCAACCGGCTGAGCGCCTGTAAGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCAT
CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGCATACGAGGGTTACGGTAGCACGCAGG
GGGGACTGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTCAGTGCCTGTACGCCC
GTTTCATGGGTTGG
Found at i:16548044 original size:26 final size:26
Alignment explanation
Indices: 16548008--16548060 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16547998 GTTGGCTTAG
16548008 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16548034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16548060 G
1 G
16548061 ATAAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16548417 original size:26 final size:26
Alignment explanation
Indices: 16548388--16548440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16548378 GTTGACTTAG
*
16548388 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16548414 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16548440 G
1 G
16548441 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16548774 original size:159 final size:159
Alignment explanation
Indices: 16548414--16548915 Score: 486
Period size: 159 Copynumber: 3.2 Consensus size: 159
16548404 CCCAGTCTAA
* *
16548414 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGATCGGCA
* * * * *
16548479 GCACG--TAGGGGGACTGGGCCAATGCCCAGCTTGCGCATTCTGCGTCT-TCGGCCGGCTGAGTG
66 GCACGCATAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCT-GGCTGGCTGA--G
* * * *
16548541 C-CT-GCACTCCTATTTCATGGGTTGGCTTAG
128 CACTCGCACGCTTGTTTCATGGGTTGACTTAG
* ** ** * * * * *
16548571 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGA-TCGAGGGTTGTGACAACGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACT-GAGGGTTGCGACAGCAGGATCGG
* * * *
16548634 TAGCACGCATAGGGGGATTGAGCCGATCCCC-GACTT-CTGCATTATGCCTCTCTGGCTGGCTCA
64 CAGCACGCATAGGGGGACTGGGCCGATCCCCAG-CTTGC-GCATTATGCCTCTCTGGCTGGCTGA
*
16548697 GCACTCGAACGCTTGTTTCATGGGTTGACTTAG
127 GCACTCGCACGCTTGTTTCATGGGTTGACTTAG
* * **
16548730 GTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGATCGGCA
* * * * *
16548795 GCACGCAT-GGGAGGACTGGGTCGATCCTCAGCTTGCACATTACGCCTCTCCGG-TCGGCTGAGC
66 GCACGCATAGGG-GGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCT-GGCTGAGC
* * *
16548858 ACCCGCACGCTCGTTTCATGGGTTAACTTAG
129 ACTCGCACGCTTGTTTCATGGGTTGACTTAG
* *
16548889 GCATATGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
16548916 CATACGAAGT
Statistics
Matches: 274, Mismatches: 56, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 54 0.20
158 8 0.03
159 202 0.74
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGATCGGCA
GCACGCATAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCTGGCTGAGCAC
TCGCACGCTTGTTTCATGGGTTGACTTAG
Found at i:16549284 original size:26 final size:26
Alignment explanation
Indices: 16549232--16549284 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16549222 GTTGGCTTAG
*
16549232 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
16549258 GCATATGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
16549284 G
1 G
16549285 AGTGTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:16550445 original size:27 final size:26
Alignment explanation
Indices: 16550415--16550472 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
16550405 GCACGCTCAT
* *
16550415 TTCATGGGTTGGCTTAAGCATACGGAG
1 TTCATGCGATGGC-TAAGCATACGGAG
* *
16550442 TTCATTCGATGTCTAAGCATACGGAG
1 TTCATGCGATGGCTAAGCATACGGAG
16550468 TTCAT
1 TTCAT
16550473 TCCCAATCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (26 bp):
TTCATGCGATGGCTAAGCATACGGAG
Found at i:16550482 original size:26 final size:26
Alignment explanation
Indices: 16550429--16550484 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16550419 TGGGTTGGCT
* *
16550429 TAAGCATACGGAGTTCATTCGATGTC
1 TAAGCATACGGAGTTCATTCCATATC
16550455 TAAGCATACGGAGTTCATTCCCA-ATC
1 TAAGCATACGGAGTTCATT-CCATATC
16550481 TAAG
1 TAAG
16550485 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATC
Found at i:16552374 original size:159 final size:159
Alignment explanation
Indices: 16552016--16552514 Score: 366
Period size: 159 Copynumber: 3.1 Consensus size: 159
16552006 GTTTAAGCAT
* ** * *
16552016 ACAGAGTTCATTCC-TAGTCTAAGATTAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCA
1 ACAGAGTTCATTCCAT-GTCTAAGATTAGACCAAACTGAGGGTTGCAGCAGCAGGATCGACAGCA
** ** * * * * * * * *
16552080 CGTAGGGGGG-ACCGGGCCGATCTTC-GGCTTGCGCATTCTACCTCTCCG-GTCGGCTGAGCGCT
65 CACAGGGGGGAACCGAACCGATC-CCAGACTTACGCATTATGCCTCTTCGACT-GGCTGAGCGCC
* * * * *
16552142 CGTACGCCCGTTTCATGGGTTGGCTTAGGCAT
128 CGTACGCTCGTTTCGTAGGTTGACTTAGGCAA
** *** *** ** ** * * *
16552174 AGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCAAGGGTTGTGGCAGCGGGATTGGCAGCA
1 ACAGAGTTCATTCCATGTCTAAG-ATTAGACCAAACTGAGGGTTGCAGCAGCAGGATCGACAGCA
* * * *
16552238 CACAGAGGGGG-ACCGAACTGATCCCCAG-CTTACGTATTATGCCTCTTCGACTGGCTTAGGGCC
65 CACAG-GGGGGAACCGAACCGAT-CCCAGACTTACGCATTATGCCTCTTCGACTGGCTGAGCGCC
* *
16552301 CGTACGCTCGTTTCGTGGGTTGACTTATGCAA
128 CGTACGCTCGTTTCGTAGGTTGACTTAGGCAA
16552333 ACAGAGTTCATTCCCA-GTCTAAGATTAGACCAAACTGAGGGTTGCAGCAGCAGGATCGACAGCA
1 ACAGAGTTCATT-CCATGTCTAAGATTAGACCAAACTGAGGGTTGCAGCAGCAGGATCGACAGCA
* ** ** * ** * **
16552397 TACAGGGGGGAATTGGGCCGATCCCTGACTTGTGCATTCTGCCTCTTCGGTTGGCTGAGCGCCCG
65 CACAGGGGGGAACCGAACCGATCCCAGACTTACGCATTATGCCTCTTCGACTGGCTGAGCGCCCG
* *
16552462 TACGCTCGTTTCGTAGGTTGGCTTAGGCAT
130 TACGCTCGTTTCGTAGGTTGACTTAGGCAA
*
16552492 ACGGAGTTCATTCCATGTCTAAG
1 ACAGAGTTCATTCCATGTCTAAG
16552515 CATACGGAGT
Statistics
Matches: 263, Mismatches: 67, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
158 64 0.24
159 193 0.73
160 6 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (159 bp):
ACAGAGTTCATTCCATGTCTAAGATTAGACCAAACTGAGGGTTGCAGCAGCAGGATCGACAGCAC
ACAGGGGGGAACCGAACCGATCCCAGACTTACGCATTATGCCTCTTCGACTGGCTGAGCGCCCGT
ACGCTCGTTTCGTAGGTTGACTTAGGCAA
Found at i:16552517 original size:26 final size:26
Alignment explanation
Indices: 16552488--16552540 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16552478 GTTGGCTTAG
16552488 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16552514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16552540 G
1 G
16552541 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16553608 original size:159 final size:158
Alignment explanation
Indices: 16553397--16553745 Score: 353
Period size: 158 Copynumber: 2.2 Consensus size: 158
16553387 CGTGACTTGG
* * * ** ** * * * *
16553397 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAG-TCGGACCAACGGTTGCGGTAGCGGGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG-TTCAGACCAAACTGAGGGTTGCGGCAACAGGA
* * * * **
16553461 CCGGCAGCACGTAGAGGGGGATCGGGCCAAT-CCTCGACTTACGCATTATGCCTCTCCGGTTGGC
65 CCGACAGCACGCAGA-GGGGATCGAGCCAATCCCCCG-CTTACGCATTATGCCTCTCCGGCCGGC
16553525 TGAACGCCCACACGCTCATTTCATGGGTTGA
128 TGAACGCCCACACGCTCATTTCATGGGTTGA
*
16553556 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGTTCAGACCAAACTGAGGGTTGTGGCAACAGGA
1 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGTTCAGACCAAACTGAGGGTTGCGGCAACAGGA
** * * * * * *
16553620 TTGATAGCACGCAGAGGGGATCGAGTCGATCCCCCGCTTGCGCATTCTGCCTCTCCGGCCGGTTG
65 CCGACAGCACGCAGAGGGGATCGAGCCAATCCCCCGCTTACGCATTATGCCTCTCCGGCCGGCTG
** * * * *
16553685 AGTGCTCGCACGCTCGTTTCATGGGTTGG
130 AACGCCCACACGCTCATTTCATGGGTTGA
16553714 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
16553746 CATACGGAGT
Statistics
Matches: 154, Mismatches: 32, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 91 0.59
159 57 0.37
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGTTCAGACCAAACTGAGGGTTGCGGCAACAGGAC
CGACAGCACGCAGAGGGGATCGAGCCAATCCCCCGCTTACGCATTATGCCTCTCCGGCCGGCTGA
ACGCCCACACGCTCATTTCATGGGTTGA
Found at i:16553749 original size:26 final size:26
Alignment explanation
Indices: 16553719--16553771 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16553709 GTTGGCTTAG
16553719 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16553745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16553771 G
1 G
16553772 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16554593 original size:157 final size:157
Alignment explanation
Indices: 16554075--16554593 Score: 478
Period size: 156 Copynumber: 3.3 Consensus size: 157
16554065 ACGCTCGCAT
*
16554075 GCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTTCCA-GTCTAAGATCAGACC-GAACC
1 GCTCGTTTCATGGGTTGACTT-AGCATACGGAGTTCA-TTCCATGTCTATGATCAGACCAG-ACC
* * * * * *
16554138 GAGGGTTGCGACAGTAGGATCGATAACACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCTCATT
63 GAGGGTTACGACAGTAGGATCAATAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATT
* * *
16554203 CTACCTC-TCTGGCCAGCTGAGCGCCCGTAC
128 CTACCTCTTC-GGTCGGCTGAGTGCCCGTAC
* * * * * ** *
16554233 GCCCGTTTCGTGGGTTGGCTT--CGTAAGGAGTTCATTCCATGTCTAATCCTCAG-CCAGATCGA
1 GCTCGTTTCATGGGTTGACTTAGCATACGGAGTTCATTCCATGTCT-ATGATCAGACCAGACCGA
* * * * * * * * * * *
16554295 AGGTTATGGCAGTGGGACCAGTAGCACGCAGAGGGGGATCGAGCTGATCCCCTGCTTGCACATTA
65 GGGTTACGACAGTAGGATCAATAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTGCACATTC
* * * *
16554360 TGCCTCTTCGGTCGGCTCAATGCCTGTAC
129 TACCTCTTCGGTCGGCTGAGTGCCCGTAC
* *
16554389 GCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCC-TAGTCTATGATCGGACCAGACCG
1 GCTCGTTTCATGGGTTGACTTA-GCATACGGAGTTCATTCCAT-GTCTATGATCAGACCAGACCG
* * * * * * *
16554453 AGGGTTACGATAGCAGGATCAACAGCACACAGGAGGGACCGGGCCGATCCCCAGTTTGCGCATTC
64 AGGGTTACGACAGTAGGATCAATAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTC
* ***
16554518 T-CCTCTTCGGTGGGCTGAGTGCCCGCGT
129 TACCTCTTCGGTCGGCTGAGTGCCCGTAC
*
16554546 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 GCTCGTTTCATGGGTTGACTTA-GCATACGGAGTTCATTCCATGTCTA
16554594 CGCATACGGA
Statistics
Matches: 280, Mismatches: 70, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
154 5 0.02
155 43 0.15
156 69 0.25
157 65 0.23
158 51 0.18
159 47 0.17
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCTCGTTTCATGGGTTGACTTAGCATACGGAGTTCATTCCATGTCTATGATCAGACCAGACCGAG
GGTTACGACAGTAGGATCAATAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTA
CCTCTTCGGTCGGCTGAGTGCCCGTAC
Done.