Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 139 of 402
Found at i:16561403 original size:158 final size:156
Alignment explanation
Indices: 16561137--16561701 Score: 528
Period size: 159 Copynumber: 3.6 Consensus size: 156
16561127 TTCGATCCCC
* * * * * * * **
16561137 GGCTTGCGCATCCTGCCTCTCTGGTC-GGTGAGCGCCCGTACGTTCATTTCGTGGGTTAACTTAG
1 GGCTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * *
16561201 GCATACAGAGTTCATTCCCA-ATCTAAGATTAGACCAGACTGAGGGTTGCGGCAACAAGATCGAC
65 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACTGAGGGTTGTGGCAGCAAGATCGAC
*
16561265 AGCACGTAGGGGGGATCGGGCCAATCCCT
129 AGCACGCAGGGGGGATCGGGCCAAT-CCT
* * * * * * *
16561294 GGCTGGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCGCACCCATTTCATGAGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * *
16561359 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGCAGCGGGACCGG
65 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACT-GAGGGTTGTGGCAGCAAGATCGA
* * * * **
16561422 TAGCACGCAGAGGTGGACCGAGCTGATCCT
128 CAGCACGCAG-GGGGGATCGGGCCAATCCT
* * * * *
16561452 CGGCTTGCGCATTATGCCTCTCCGGCCTGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTA
1 -GGCTTGCGCATTCTGCCTCTCCGG-CAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTA
* * *
16561517 GGCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAAGATCGA
64 GGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCGGACTGAGGGTTGTGGCAGCAAGATCGA
*
16561581 CAGCACGCAGGGCGGGATTGGGCCAATACCT
128 CAGCACGCAGGG-GGGATCGGGCCAAT-CCT
* * ** * *
16561612 GGCTTGTGCATTCTGCCTCTCCGGCAGCTGAGCACCCTTACGCTTGTTTCGTGGGTTGGCTTAGG
1 GGCTTGCGCATTCTGCCTCTCCGGCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
16561677 CATACGGAGTTCATTCCATGTCTAA
66 CATACGGAGTTCATTCCATGTCTAA
16561702 CCATACGGAG
Statistics
Matches: 324, Mismatches: 72, Indels: 23
0.77 0.17 0.05
Matches are distributed among these distances:
157 27 0.08
158 140 0.43
159 153 0.47
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GGCTTGCGCATTCTGCCTCTCCGGCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACTGAGGGTTGTGGCAGCAAGATCGACAG
CACGCAGGGGGGATCGGGCCAATCCT
Found at i:16561644 original size:317 final size:316
Alignment explanation
Indices: 16561130--16561701 Score: 768
Period size: 317 Copynumber: 1.8 Consensus size: 316
16561120 CCACCCGTTC
* * * * * * * *
16561130 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGTGAGCGCCCGTACGTTCATTTCGTGGGTTA
1 GATCCCCGGCTTGCGCATCATGCCTCTCCGGCCGCTCAGCGCCCGCACGCTCATTTCATGGGTTA
*
16561195 ACTTAGGCATACAGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGCGGCAACAAGA
66 ACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAAGA
* * *
16561260 TCGACAGCACGTAGGGGGGATCGGGCCAATCCCTGGCTGGCGCATTCTGCCTCTCCGGTCGGCTG
131 TCGACAGCACGCAGGGGGGATCGGGCCAATACCTGGCTGGCGCATTCTGCCTCTCCGGTCAGCTG
* * *
16561325 AGCGCCCGCGCACCCATTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
196 AGCACCCGCACACCCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
16561390 AGCCGGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGTGGACCGAGCT
261 AGCCGGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGTGGACCGAGCT
* * * *
16561446 GATCCTCGGCTTGCGCATTATGCCTCTCCGGCCTGCTCAGCGCCTGCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATCATGCCTCTCCGGCC-GCTCAGCGCCCGCACGCTCATTTCATGGGTT
* * * * * * * * *
16561511 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAAG
65 AACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAAG
* * *
16561576 ATCGACAGCACGCAGGGCGGGATTGGGCCAATACCTGGCTTGTGCATTCTGCCTCTCCGG-CAGC
130 ATCGACAGCACGCAGGG-GGGATCGGGCCAATACCTGGCTGGCGCATTCTGCCTCTCCGGTCAGC
** * *** * *
16561640 TGAGCACCCTTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
194 TGAGCACCCGCACACCCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16561702 CCATACGGAG
Statistics
Matches: 215, Mismatches: 39, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
316 28 0.13
317 149 0.69
318 38 0.18
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (316 bp):
GATCCCCGGCTTGCGCATCATGCCTCTCCGGCCGCTCAGCGCCCGCACGCTCATTTCATGGGTTA
ACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCAACAAGA
TCGACAGCACGCAGGGGGGATCGGGCCAATACCTGGCTGGCGCATTCTGCCTCTCCGGTCAGCTG
AGCACCCGCACACCCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGCCGGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGTGGACCGAGCT
Found at i:16562249 original size:355 final size:362
Alignment explanation
Indices: 16561619--16562277 Score: 845
Period size: 355 Copynumber: 1.8 Consensus size: 362
16561609 CCTGGCTTGT
* * ** * * *
16561619 GCATTCTGCCTCTCCGGCAGCTGAGCACCCTTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGG
1 GCATTATGCCTCTCCGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* * ** *
16561684 AGTTCATTCCATGTCTAACCATACGGAGTTCATTCGTAGTCTAAGATTGGACCGGACCGAGGGTT
66 AGTTCATCCCATATCTAACCATACGGAGTTCATTCCCAGTCCAAGATTGGACCGGACCGAGGGTT
*
16561749 ACGATAGCAGGACCAGCAGCAGGATCGATAGCACGTGAGGGGGACAGGGCCGAACCCCGGCTTAC
131 ACGATAGCAGGACCAG-AGCAGGA-CGATAGCAC--GAGGGGGACAGGGCCGAACCCCGACTTAC
* * * **
16561814 GCATTCTGTCTCTCCGGCCGACTGAGTGCCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACG
192 GCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACG
16561879 GAGTTCAGTCCATGTCTAAGCCCCAGCCGGA-CTGAGGGTTGTGGCAGCAAGACCGATAGCGGGA
257 GAGTTCAGTCCATGTCTAAGCCCCAGCCGGATC-GAGGGTTGTGGCAGCAAGACCGATAGCGGGA
16561943 TCGACAGCACATAGAGGGAGACCGAGCTGATCCCCGGCTTAC
321 TCGACAGCACATAGAGGGAGACCGAGCTGATCCCCGGCTTAC
*
16561985 GCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCG-CCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
16562050 AAGTTCATCCCCA-ATCTAAGCATATGGAGTTCATTCCCAGTCCAAGATTGGACTGGATCGAGGG
65 AAGTTCAT-CCCATATCTAACCATACGGAGTTCATTCCCAGTCCAAGATTGGACCGGACCGAGGG
* * * * * * *
16562114 TTGCGGTAGTAGGATC-G-GCA-G-C-A-CGCA-G-GGGGGACCA-GGCCGATCCCCGACTTGCG
129 TTACGATAGCAGGACCAGAGCAGGACGATAGCACGAGGGGGA-CAGGGCCGAACCCCGACTTACG
* * * *
16562170 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
193 CATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGG
* *
16562235 AGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGG
258 AGTTCAGTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGG
16562278 TAGCGGGATC
Statistics
Matches: 253, Mismatches: 36, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
355 117 0.46
356 4 0.02
359 3 0.01
360 1 0.00
361 1 0.00
363 1 0.00
364 3 0.01
366 16 0.06
367 104 0.41
368 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (362 bp):
GCATTATGCCTCTCCGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
AGTTCATCCCATATCTAACCATACGGAGTTCATTCCCAGTCCAAGATTGGACCGGACCGAGGGTT
ACGATAGCAGGACCAGAGCAGGACGATAGCACGAGGGGGACAGGGCCGAACCCCGACTTACGCAT
TCTGCCTCTCCGACCGACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCAGTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAAGACCGATAGCGGGATCGAC
AGCACATAGAGGGAGACCGAGCTGATCCCCGGCTTAC
Found at i:16562587 original size:159 final size:158
Alignment explanation
Indices: 16562108--16562572 Score: 558
Period size: 159 Copynumber: 2.9 Consensus size: 158
16562098 TGGACTGGAT
* * *
16562108 CGAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCAT
1 CGAGGGTTGTGGTAGCAGGATC-GCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
* * *
16562173 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
65 TCTACCTCTTCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
* *
16562238 TCATTCCATGTCTAAG-CCCCAGCTGGAT
130 TCATTCCATGTCTAAGACCCCAGCCGGAC
* * * * *
16562266 CGAGGGTTGTGGTAGCGGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTACGCAT
1 CGAGGGTTGTGGTAGCAGGATCG-CAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
* * *
16562331 TCTACCTTTTCCGACCGGATGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
65 TCTACCTCTT-CGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
16562396 TTCATTCCATGTCTAA-ACCCCAGCCGGAC
129 TTCATTCCATGTCTAAGACCCCAGCCGGAC
* * * * *
16562425 CGAGGGTTGTGGCAGCCGGACCAGCAGCACGCAGAGGGGGACCAGGTCGATCCTCGGCTTGCGCA
1 CGAGGGTTGTGGTAGCAGGATC-GCAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCA
* * * * * * * * ** * *
16562490 TTATACCTCTTCGGCGGGCTCAACGCTCGGACGCTCATTTCGTGGGTTAACTTATGCATACGGAG
64 TTCTACCTCTTCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
16562555 TTCATTCC-TAGTCTAAGA
129 TTCATTCCAT-GTCTAAGA
16562573 TTGGACCGGA
Statistics
Matches: 260, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
157 1 0.00
158 63 0.24
159 161 0.62
160 35 0.13
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGTGGTAGCAGGATCGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATT
CTACCTCTTCGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGACCCCAGCCGGAC
Found at i:16563490 original size:26 final size:26
Alignment explanation
Indices: 16563460--16563512 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16563450 GTTGACTTAG
16563460 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16563486 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16563512 G
1 G
16563513 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16563794 original size:159 final size:158
Alignment explanation
Indices: 16563486--16563992 Score: 418
Period size: 159 Copynumber: 3.2 Consensus size: 158
16563476 CCTAGTCTAA
** *
16563486 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCAG-ACCGAGGGTTG-ATG-TAGCAGGATC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCGA-CAGAACCGAGGGTTGTA-GCT-GCAGGATC
* *** *** * * * *
16563547 GGCAGCATGTAGGGGGGACCAAGCCGATCCCCGGCTTACGCATTCTGCCTCTCGGGTAGGCTTAG
62 GACAGCACACAGGGGGGACTGCGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTTAG
* * * *
16563612 CGCCCGTACACCCATTTCGTGGGTTGGCTTAG
127 CACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
16563644 GCATAGGGAGTTCATTCCATGTCTAAGCCCCTACTAG-ACCGAGGGTTGTGGCAGTG-A-GATCG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCGAC-AGAACCGAGGGTTGTAGC--TGCAGGATCG
* * * * * *
16563706 GCAGCACACAGAGGGGGACTGCGCTGATCCCCAACTTACGCATTATGCCTGTCCGTTCGGCTTAG
63 ACAGCACACAG-GGGGGACTGCGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTTAG
* *
16563771 CACCCGCACGCTCATTTCATGGGTTGACTTAG
127 CACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *
16563803 TCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACTGAGGGTTGTAGCTGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCGACAGAACCGAGGGTTGTAGCTGCAGGATCGAC
*** * * * * * * *
16563867 AGCATGTAGGGGGGATTGGGCCGATCCCCGCCTTACGCATTCTACCTTTTCGACCGGCTTAGCAC
65 AGCACACAGGGGGGACTGCGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTTAGCA-
*
16563932 CCGCACGCACGCTCGTTTCGTGGGTTGGCTTAG
129 -C-C-CGCACGCTCATTTCGTGGGTTGGCTTAG
*
16563965 GCATACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16563993 ATACAGAGTT
Statistics
Matches: 277, Mismatches: 56, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 97 0.35
159 118 0.43
160 5 0.02
161 5 0.02
162 46 0.17
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCGACAGAACCGAGGGTTGTAGCTGCAGGATCGACA
GCACACAGGGGGGACTGCGCCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTTAGCACC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16564001 original size:26 final size:26
Alignment explanation
Indices: 16563965--16564017 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16563955 GTTGGCTTAG
16563965 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16563991 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16564017 G
1 G
16564018 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16564610 original size:26 final size:26
Alignment explanation
Indices: 16564581--16564633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16564571 GTTGACTTAG
* *
16564581 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16564607 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16564633 G
1 G
16564634 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16565115 original size:26 final size:26
Alignment explanation
Indices: 16565065--16565117 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16565055 GTTGGCTTAG
* *
16565065 GCATACAGATTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16565091 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16565117 G
1 G
16565118 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16565867 original size:159 final size:155
Alignment explanation
Indices: 16565459--16566263 Score: 462
Period size: 159 Copynumber: 5.2 Consensus size: 155
16565449 CCCTGTTTAA
* * * * * *
16565459 GCATACGGAGTTCATTCCCAGTCTAAAATCGGATCGGATCGAGGGTTGTGGTAGCT-GGAT-TAG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG-TAGGATCGA-
* * * * * * * * * * * * *
16565522 CAGCATGC-AGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCTGACTGAGC
63 CAGCACGCTAGAGGGGA-CCGGCCGATCCTCGGCTTACGCATTATGCCT-T-CTGCAGGCTCAAC
* * *
16565586 GCCTGCACGCCCGTTTCATGGGTT-AGCTTAG
125 GCCCGCACGCTCGTTTCGTGGGTTGA-CTTAG
* ** * ** *
16565617 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGAGTTATGGTAGCT-GGACCGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAG-TAGGATCGA
* * * * * *
16565680 TAGTA-GGTAGAGGGGGATCAGGCTGATCCTCGGCTTGCGCATTATGCCTCTCTGGCAGGCTCAA
63 CAGCACGCTAGA-GGGGA-CCGGCCGATCCTCGGCTTACGCATTATGCCT-TCT-GCAGGCTCAA
* * *
16565744 TGCCCGCACACTCGTTTCGTGGGTTAACTTAG
124 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16565776 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
* * * * * *
16565841 GCACGCTGGAAGGGACCGGATCGATCCCCGGCTTATGCATTCTG-C--CT-----CTC--CG---
65 GCACGCTAGAGGGGACCGG-CCGATCCTCGGCTTACGCATTATGCCTTCTGCAGGCTCAACGCCC
* *
16565893 G-ACGCTCGTTTCATGGGTTGGCTTAG
129 GCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * ** * *
16565919 GCGTAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGATCGAGGGTTATGGTAGTGGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* *
16565983 AGCACGC-AGAGGGGGATCGGGCCGATACCT-GGCTTACGCATTATGCCTT-TTCGATCGGCTCA
64 AGCACGCTAGA-GGGGA-CCGGCCGAT-CCTCGGCTTACGCATTATGCCTTCTGC-A--GGCTCA
* *
16566045 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAC
123 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16566078 GCATACGGAGTTCAATTCCAGTCTAAGATC-GAACCGGACCTAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTC-ATTCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * *
16566142 GGCACG-TAAGAGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCC-TCTCCAACCGGCT-AA
64 AGCACGCT-AGAGGGGACC-GGCCGATCCTCGGCTTACGCATTATGCCTTCTGC-A--GGCTCAA
* *
16566204 GCGCCCGCACGCTCGTTTCGTGGTTTGGCTTAG
124 -CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16566237 GCATACGGAGTTCATTTCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16566264 CATACAAAAT
Statistics
Matches: 499, Mismatches: 104, Indels: 87
0.72 0.15 0.13
Matches are distributed among these distances:
142 5 0.01
143 94 0.19
144 9 0.02
145 1 0.00
147 1 0.00
149 3 0.01
153 3 0.01
155 4 0.01
157 5 0.01
158 68 0.14
159 289 0.58
160 17 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAG
CACGCTAGAGGGGACCGGCCGATCCTCGGCTTACGCATTATGCCTTCTGCAGGCTCAACGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16566170 original size:302 final size:302
Alignment explanation
Indices: 16565592--16566193 Score: 770
Period size: 302 Copynumber: 2.0 Consensus size: 302
16565582 GAGCGCCTGC
*
16565592 ACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACC
1 ACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
* * * * * *
16565657 GAGAGTTATGGTAGCTGGACCGATAGTAGGTAGAGGGGGATCAGGCTGATCCTCGGCTTGCGCAT
66 GAGAGTTATGGTAGCTGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCTCGGCTTACGCAT
* *
16565722 TATGCCTCTCTGGCAGGCTCAATGCCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGT
131 TATGCCTCTCTGGCAGGCTCAACGCCCGCACACTCGTTTCGTGGGTTAACTTACGCATACGGAGT
* * *
16565787 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCTGGAA
196 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTAGAA
* * *
16565852 GGGACCGGATCGATCCCCGGCTTATGCATTCTGCCTCTCCGG
261 GGGACCGGACCGATCCCCAGCTTACGCATTCTGCCTCTCCGG
* * * * * *
16565894 ACGCTCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATC
1 ACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
* * * *
16565959 GAGGGTTATGGTAG-TGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATACCT-GGCTTACGC
66 GAGAGTTATGGTAGCT-GGACCGACAGCACGCAGAGGGGGATCAGGCCGAT-CCTCGGCTTACGC
* * * * *
16566022 ATTATGCCT-TTTCG-ATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACG
129 ATTATGCCTCTCTGGCA--GGCTCAACGCCCGCACACTCGTTTCGTGGGTTAACTTACGCATACG
* * *
16566085 GAGTTCAATT-CCAGTCTAAGATC-GAACCGGACCTAGGGTTGCGGTAGCAGGATCGACGGCACG
192 GAGTTC-ATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
*
16566148 -TAAGAGGGGACCAGG-CCGATCCCCAGCTTACGCATTCTGCCTCTCC
255 CT-AGAAGGGACC-GGACCGATCCCCAGCTTACGCATTCTGCCTCTCC
16566194 AACCGGCTAA
Statistics
Matches: 258, Mismatches: 34, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
300 1 0.00
301 6 0.02
302 243 0.94
303 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (302 bp):
ACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
GAGAGTTATGGTAGCTGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCCTCGGCTTACGCAT
TATGCCTCTCTGGCAGGCTCAACGCCCGCACACTCGTTTCGTGGGTTAACTTACGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTAGAA
GGGACCGGACCGATCCCCAGCTTACGCATTCTGCCTCTCCGG
Found at i:16566752 original size:156 final size:158
Alignment explanation
Indices: 16566415--16566774 Score: 412
Period size: 156 Copynumber: 2.3 Consensus size: 158
16566405 CGCATGCTCA
* *
16566415 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCAGACTGAGGGTT
* **
16566480 GTGGCAGCGAGACCGACAACACGCAGCGGGGACTGAGCTGATCCTCGACTTGCGCATTATGCCTC
66 GTGGCAGCGAGACCGACAACACGCAGCGGGGACCGAGCCAATCCTCGACTTGCGCATTATGCCTC
*
16566545 TCAGGCCGGCTCAGCACCCGCACACTCG
131 TCAGGCCAGCTCAGCACCCGCACACTCG
* ** *
16566573 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCG-GACCGGAC-GAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCGAG-CCAGACTGAGGG
* * * * * *
16566635 TTGTGGTAGC-AGGATCGACATCATGCAG-GGAGGACCGAGCCAATCC-CTGGCTTGCGCATTCT
64 TTGTGGCAGCGA-GACCGACAACACGCAGCGG-GGACCGAGCCAATCCTC-GACTTGCGCATTAT
* * ** *
16566697 GCCTCTCCA-G-CAGTTGAGCACCCGCACGTTTG
126 GCCTCT-CAGGCCAGCTCAGCACCCGCACACTCG
*
16566729 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16566775 ATACGGAGTT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
156 61 0.36
157 61 0.36
158 49 0.29
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCAGACTGAGGGTT
GTGGCAGCGAGACCGACAACACGCAGCGGGGACCGAGCCAATCCTCGACTTGCGCATTATGCCTC
TCAGGCCAGCTCAGCACCCGCACACTCG
Found at i:16566783 original size:26 final size:26
Alignment explanation
Indices: 16566747--16566799 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16566737 GTTGGCTTAG
*
16566747 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16566773 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16566799 G
1 G
16566800 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16566883 original size:510 final size:510
Alignment explanation
Indices: 16565894--16567128 Score: 1343
Period size: 510 Copynumber: 2.4 Consensus size: 510
16565884 GCCTCTCCGG
*
16565894 ACGCTCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGA-T
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACT
* * * * * * * * * *
16565958 CGAGGGTTATGGTAGTGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATACCT-GGCTTACGC
66 -GAGGGTTATGGCAGCGAGACCGACAACACGCAG-CGGGGAT-GAGCTGAT-CCTCGGCTTGCGC
* * *
16566022 ATTATGCCTTTTCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGA
127 ATTATGCC-TCTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
16566087 GTTCAATTCCAGTCTAAGATCGAACCGGACCTAGGGTTGCGGTAGCAGGATCGACGGCACGTAAG
191 GTTC-ATTCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAG
* * *
16566152 AGGGGACCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAACCGGCTAAGCGCCCGCACGCT
255 AGGGGACCAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCAACCAGCTAAGCACCCGCACGCT
* * *
16566217 CGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACAAAATTCATTCCC
320 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAATTCATTCCA
* * * * * * * *
16566282 AGTCTAAGATCGGTCTGGACCGAGGGTTGCTGCAGCAGGACCAACAGCAGGATCTACAGCACGCA
385 AGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAAGACCAACAGCAAGATCGACAGCACGCA
* * * ** *
16566347 GGGGAGGATCAGCCAATCCTCGGCTTGCACATTCTACCTCTTCGATGGGCTGAGCGCCCGC
450 GGGGAGGACCAGCCAATCCCCGGCTTGCACATTCTACCTCTCCGACCGGCTGAGCACCCGC
* *
16566408 ATGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACT
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACT
* *
16566473 GAGGGTTGTGGCAGCGAGACCGACAACACGCAGCGGGGACTGAGCTGATCCTCGACTTGCGCATT
66 GAGGGTTATGGCAGCGAGACCGACAACACGCAGCGGGGA-TGAGCTGATCCTCGGCTTGCGCATT
* * * *
16566538 ATGCCTCTCAGGCCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
130 ATGCCTCTC-GACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
16566603 CATTCCTAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGTAGCAGGATCGACATCATG-CAG-GG
194 CATTCC-AGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGAGG
** * * * * * *
16566665 AGGACC-GAGCCAATCCCTGGCTTGCGCATTCTGCCTCTCC-AGCAGTTGAGCACCCGCACGTTT
258 -GGACCAG-GCCAATCCCCAGCTTACGCATTCTGCCTCTCCAACCAGCTAAGCACCCGCACGCTC
** *
16566728 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAA
321 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAATTCATTCCAA
* * ** **
16566793 GTCTAAGATTGGACCGGACCAAGGGTTACGGTAGCAAGACCAGTAGCAAGATCGGTAGCACGCAG
386 GTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAAGACCAACAGCAAGATCGACAGCACGCAG
* ** ** * ** * *
16566858 GGG-GGACCGGGCTGATCCCCGGCTTGCGTATTTTGTCTCTCCGGCCGGTTGAGCACCCGC
451 GGGAGGACC-AGCCAATCCCCGGCTTGCACATTCTACCTCTCCGACCGGCTGAGCACCCGC
* * * ** * * * *
16566918 ACACTTGTTTCATGGGTTAGCTTAGGCATATAGAGTTCATTCCATGTCGAAGCCCCAGCCGGACC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACT
* * * *
16566983 GAGGGTTATGGCAGCAAGACCGGTAACGGGATCGACAGCACGCATAGGGAGATCAGGCTGATCCC
66 GAGGGTTATGGCAGCGAGACC-G--AC---AAC-AC-GCA-GC---GGG-GATGA-GCTGATCCT
* *
16567048 CGGCTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
117 CGGCTTGCGCATTATGCCTCT-CGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
*
16567113 GGCATACGAAGTTCAT
181 GGCATACGGAGTTCAT
16567129 CCCCAATCTA
Statistics
Matches: 598, Mismatches: 100, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
509 4 0.01
510 241 0.40
511 36 0.06
512 37 0.06
513 96 0.16
514 87 0.15
515 1 0.00
516 2 0.00
517 2 0.00
518 3 0.01
519 2 0.00
522 5 0.01
523 81 0.14
524 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (510 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACT
GAGGGTTATGGCAGCGAGACCGACAACACGCAGCGGGGATGAGCTGATCCTCGGCTTGCGCATTA
TGCCTCTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGAGGGGA
CCAGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCAACCAGCTAAGCACCCGCACGCTCGTTTC
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAATTCATTCCAAGTCTA
AGATCGGACCGGACCAAGGGTTACGGCAGCAAGACCAACAGCAAGATCGACAGCACGCAGGGGAG
GACCAGCCAATCCCCGGCTTGCACATTCTACCTCTCCGACCGGCTGAGCACCCGC
Found at i:16567433 original size:158 final size:158
Alignment explanation
Indices: 16567196--16567546 Score: 517
Period size: 158 Copynumber: 2.2 Consensus size: 158
16567186 TGCGATAATA
* * * * * *
16567196 GGATCAGCAGCACGC-GAGGGGACCGGGCCCATCCCCGACTTGCGCATTCTGCCTCTCCGGCTAG
1 GGATCAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCAG
* *
16567260 CTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 ATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
* * *
16567325 CCCAGCTGGATCGAGGGTTGTGGTAGCG
131 CCCAGCCGGACCGAGGGTTGTGGCAGCG
* *
16567353 GGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCC-AGCTTACGCATTCTACCTCTCCGACCG
1 GGATCAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGA-CTTACGCATTCTACCTCTCCGACCA
16567417 GATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
65 GATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
*
16567482 CCCCAGCCGGACCGAGGGTTGTGGCAGCT
130 CCCCAGCCGGACCGAGGGTTGTGGCAGCG
* * *
16567511 GGACCAGCAGCACGCAGAGGGGGACCAGGTCGATCC
1 GGATCAGCAGCACGCAG-GGGGGACCGGGCCGATCC
16567547 TCGGCTTGCG
Statistics
Matches: 173, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
157 15 0.09
158 142 0.82
159 16 0.09
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (158 bp):
GGATCAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCAG
ATGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
CCCAGCCGGACCGAGGGTTGTGGCAGCG
Found at i:16568559 original size:26 final size:26
Alignment explanation
Indices: 16568526--16568581 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16568516 TGGGTTGACT
16568526 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
16568552 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
16568578 TAAG
1 TAAG
16568582 ATCAGATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:16569052 original size:26 final size:26
Alignment explanation
Indices: 16569016--16569068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16569006 GTTGGCTTAG
16569016 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16569042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16569068 G
1 G
16569069 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16570937 original size:159 final size:157
Alignment explanation
Indices: 16570509--16570941 Score: 397
Period size: 159 Copynumber: 2.7 Consensus size: 157
16570499 CCCCATTTAA
* * * * * **
16570509 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGTGGTAGCTGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGC-GGATCGACA
* * * *
16570574 GCATGCAGGG-GGGATCGGGTCGATCCTCAGCTTGCACATTCTACCTCTCCGACTGACTGAACGC
65 GCA-GCTGGGAGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCGACTGACTCAACGC
* * *
16570638 CTGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCGCACACTCATTTCGTGGGTTGACTTAG
* * ** * * *
16570667 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGCCCGCGAGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCG-GATCGA
* * * * * * * * *
16570730 CAGTAGGTAGAGAGGGATCAGG-CTGATTCTCGGCTTGCACATTATGCCTCTCTGGCTGGCTCAA
63 CAGCAGCT-GGGAGGGATCGGGTC-GATCCTCGGCTTGCACATTCTGCCTCTCCGACTGACTCAA
* * *
16570794 TGCCCGCACACTCGTTTTGTGGGTTGACTTAG
126 CGCCCGCACACTCATTTCGTGGGTTGACTTAG
* * *
16570826 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGC-GGATCGACA
* ***
16570891 GCACGCTGGGAGGGATCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCC
65 GCA-GCTGGGAGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCC
16570942 AGACGCCCGT
Statistics
Matches: 210, Mismatches: 54, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
157 6 0.03
158 48 0.23
159 147 0.70
160 9 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCGGATCGACAG
CAGCTGGGAGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCGACTGACTCAACGCCC
GCACACTCATTTCGTGGGTTGACTTAG
Found at i:16571220 original size:302 final size:302
Alignment explanation
Indices: 16570649--16571245 Score: 704
Period size: 302 Copynumber: 2.0 Consensus size: 302
16570639 TGCACGCTCA
*
16570649 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * * * * *
16570714 GTGCCCGCGAGACCGACAGTAGGTAGAGAGGGATCAGGCTGATTCTCGGCTTGCACATTATGCCT
66 ATGCCAGCGAGACCGACAGCACGCAGAGAGGGACCAGGCTGATCCTCGGCTTGCACATTATGCCT
** * **
16570779 CTCTGGCTGGCTCAATGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
131 CTCTGGCTGGCTCAACACCCGCACACTCGTTTCGTGGGTTGACTTACACATACGGAGTTCATTCC
* * * * *
16570844 CAGTCTAAGATCGGACTGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGGGAGGGATCG
196 CAGTCTAAGATCGAACTGAACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGAGGGACCG
** * * *
16570909 GGTCGATCCCCGGCTTATGCATTCTGCCTCTCCAGACGCCCG
261 GACCGATCCCCAGCTTACGCATTCTACCTCTCCAGACGCCCG
* * * *
16570951 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCTAGTCGGATCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
** * * * * * *
16571016 ATGGTAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGTC-GATCC-CTGGCTTGCGCATTATGC
66 ATGCCAGCGAGACCGACAGCACGCAGAGAGGGACC-AGGCTGATCCTC-GGCTTGCACATTATGC
* * *
16571079 CT-TTTCGG-TCGGTTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTACACATACGGAGTTCA
129 CTCTCT-GGCT-GGCTCAACACCCGCACACTCGTTTCGTGGGTTGACTTACACATACGGAGTTC-
* * **
16571142 ATT-CCAGTCTAAGATCGAA-TCGAACCTAGGGTTGTGACAGCAGGATCAATGGCACGCAAGGG-
191 ATTCCCAGTCTAAGATCGAACT-GAACCGAGGGTTGCGACAGCAGGATCAACAGCACGC-AGGGA
16571204 GGGACCGGACCGATCCCCAGCTTACGCATTCTACCTCTCCAG
254 GGGACCGGACCGATCCCCAGCTTACGCATTCTACCTCTCCAG
16571246 CCAGCTAAGC
Statistics
Matches: 246, Mismatches: 42, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
301 5 0.02
302 232 0.94
303 9 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (302 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
ATGCCAGCGAGACCGACAGCACGCAGAGAGGGACCAGGCTGATCCTCGGCTTGCACATTATGCCT
CTCTGGCTGGCTCAACACCCGCACACTCGTTTCGTGGGTTGACTTACACATACGGAGTTCATTCC
CAGTCTAAGATCGAACTGAACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGAGGGACCG
GACCGATCCCCAGCTTACGCATTCTACCTCTCCAGACGCCCG
Found at i:16571672 original size:26 final size:26
Alignment explanation
Indices: 16571643--16571693 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16571633 GTTGACTTAG
16571643 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16571669 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16571694 GGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16571685 original size:356 final size:342
Alignment explanation
Indices: 16571255--16572673 Score: 876
Period size: 343 Copynumber: 4.2 Consensus size: 342
16571245 GCCAGCTAAG
* * * * * **
16571255 CGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAAACAGAGTTCATTTCATGTCTAAGCATACA
1 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACA
* * * * *
16571320 AAATTCATTCCCAGTCTAAGATTGGTTTGGATCGAGGGTTACGGCAGTAGGACCAGCTGCAGGAT
65 AAATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT---GC----GG--CA---ACAGGAT
* * * ***
16571385 CTACAGCACGCAGGGGAGGA-CTGAGCCAAT-CCTCGGCTTGCACATTCTACCTCTTCGGTGGGC
118 CGACAGCACGCAGGGG-GGATC-GAGCCAATCCCT-GGCTTACACATTCTACCTCTCCGACCGGC
* * *
16571448 TGAATGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCC
180 TGAACGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * * * * *
16571513 CTAGCCGGACTGAGGGTTGTGGTAGCGGGACTGACAGCACGCAGCGGGGGACTGAGCT-GATCCC
245 CCAGCCGGACAGAGGGTTGTGGCAACGGGACCGACAGCACACAGAGAGGGACCG-GCTCGATCCC
* * *
16571577 CGGCTTGCGCATTATGCCTC-TCAGGCTGGCGGAA
309 CGACTTGCGCATTATGCCTCTTC-GGCTGACGCAA
** *
16571611 CGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
1 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACA
* * * *
16571676 GAGTTCATTCCCAGTCTAGGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGATAGCACGCA
65 AAATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCA
* * * * * *
16571741 GGGGGGATCGAGTCGATCCCTGGCTTACACATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGC
130 GGGGGGATCGAGCCAATCCCTGGCTTACACATTCTACCTCTCCGACCGGCTGAACGCCCGCACAC
* * *
16571806 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGT
195 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGG
* * * * *
16571871 GTTGTGGCAATGGGACCGGCAGCCCACAGAGAGGGACCGGGTCGATCCCCGACTTGCGTATTATG
260 GTTGTGGCAACGGGACCGACAGCACACAGAGAGGGACCGGCTCGATCCCCGACTTGCGCATTATG
* *
16571936 CCTCTTCGGCTGACTCAG
325 CCTCTTCGGCTGACGCAA
* *
16571954 CACCCGTACGCTCGTTTCATGGGTTGACTTATGCATAC---G---------G----AG--T----
1 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAA
* * * * * *
16571997 --TT-ATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGACAACAGGATCGACACCACGCAG
66 AATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCA-
* * * * * * * *
16572059 GGGGGGATCGGG-TCGA-TC---CCC-GGCTTGA-GCATTCTGCCTCTCCGGCTGGATGAGCACC
130 ---GGG---GGGATCGAGCCAATCCCTGGCTT-ACACATTCTACCTCTCCGACCGGCTGAACGCC
* ** * *
16572117 CGTA-AGGTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
188 CGCACA-CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * *** * * * * * *
16572181 GACCGAGGGTTGTGGCAGCGGGACC-ACCCGTAGGTAAAGGGGGACTGGGC-CAATCCTCGGCTT
252 GACAGAGGGTTGTGGCAACGGGACCGA-CAGCACACAGAGAGGGAC-CGGCTCGATCCCCGACTT
* * *
16572244 GCGCATTATGCCTC-TCTGGCCGGCTCAA
315 GCGCATTATGCCTCTTC-GGCTGACGCAA
* * * * * * * *
16572272 CACCTGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAAGCATACG
1 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAGCATACA
* * * * * * * * * *
16572337 GAGTGCATTCCCAGTCTAAGATCCGACCGAACTGAGGGTTACGACAACAGGATCGACAGCATGCA
65 AAATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCA
* * ** * * * ** *
16572402 GGAGGGA-CTGGGCTGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCTCGCAC
130 GGGGGGATC-GAGCCAATCCCT-GGCTTACACATTCTACCTCTCCGACCGGCTGAACGCCCGCAC
* * * * *
16572465 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGACGAATC-G
193 ACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CAG
* * * ** *** *
16572529 ACGGTTGTGGCAGCGGGACTGGTAGCAGGTAGAGAGGGACCAGGC-CGATCCCCGGCTTGCGCAT
257 AGGGTTGTGGCAACGGGACCGACAGCACACAGAGAGGGACC-GGCTCGATCCCCGACTTGCGCAT
* * *
16572593 TATGCCTC-TCTGGCAGGCTCAA
321 TATGCCTCTTC-GGCTGACGCAA
* * * ** * *
16572615 TGCCCGTACACTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
1 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
16572674 ATCAGACCAG
Statistics
Matches: 848, Mismatches: 159, Indels: 125
0.75 0.14 0.11
Matches are distributed among these distances:
317 53 0.06
318 181 0.21
319 6 0.01
321 4 0.00
322 2 0.00
323 4 0.00
324 4 0.00
326 2 0.00
330 1 0.00
331 1 0.00
335 2 0.00
337 5 0.01
338 1 0.00
340 3 0.00
341 2 0.00
342 2 0.00
343 404 0.48
344 78 0.09
347 2 0.00
349 2 0.00
353 2 0.00
356 85 0.10
357 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (342 bp):
CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAA
AATTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAG
GGGGGATCGAGCCAATCCCTGGCTTACACATTCTACCTCTCCGACCGGCTGAACGCCCGCACACC
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGG
TTGTGGCAACGGGACCGACAGCACACAGAGAGGGACCGGCTCGATCCCCGACTTGCGCATTATGC
CTCTTCGGCTGACGCAA
Found at i:16571920 original size:343 final size:338
Alignment explanation
Indices: 16571453--16572673 Score: 1236
Period size: 343 Copynumber: 3.6 Consensus size: 338
16571443 TGGGCTGAAT
* * * *
16571453 GCCCGCACACTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCTAGC
1 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * * *
16571518 CGGACTGAGGGTTGTGGTAGCGGGACTGACAGCACGCAGCGGGGGACTGAGCTGATCCCCGGCTT
66 CGGAC-GAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTT
* ** * * *
16571583 GCGCATTATGCCTCTCAGGCTGGCGGAACGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATA
130 GCGCATTATGCCTCTCTGGCTGGCTCAACACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATA
*
16571648 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGACCGAGG
195 CGGAGTTCATTCCCAGTCTAAGCATACGGAG-TCATTCCCAGTCTA-GATC-GA-CGGACCGAGG
* * *
16571713 GTTGCGGCAACAGGATCGATAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTACACATTCTGC
256 GTTGCGACAACAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTACGCATTCTGC
*
16571778 CTCTCCGACCGGTTGAGC
321 CTCTCCGACCGGATGAGC
* *
16571796 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
1 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* ** * * * *
16571861 CGGACAGAGTGTTGTGGCAATGGGACCGGCAGCCCACAGAGAGGGACCGGGTCGATCCCCGACTT
66 CGGAC-GAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTT
* * * * * *
16571926 GCGTATTATGCCTCT-TCGGCTGACTCAGCACCCGTACGCTCGTTTCATGGGTTGACTTATGCAT
130 GCGCATTATGCCTCTCT-GGCTGGCTCAACACCCGTACACTCGTTTCGTGGGTTGACTTAGGCAT
* *
16571990 ACGGAGTTTATTCCCAGT-T-----TA---AG--------A-TC-AGA-C--CAGACCGAGGGTT
194 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTCATTCCCAGTCTAGATCGACGGACCGAGGGTT
* * *
16572033 GCGACAACAGGATCGACACCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGA-GCATTCTGCC
259 GCGACAACAGGATCGACAGCACGCA-GGGGGGATCGAGTCGATCCCTGGCTT-ACGCATTCTGCC
* *
16572097 TCTCCGGCTGGATGAGC
322 TCTCCGACCGGATGAGC
* * * ** *
16572114 ACCCGTAAGGTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
1 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* ** * * * * * * * * *
16572179 CAGACCGAGGGTTGTGGCAGCGGGACCACCCGTAGGTAAAGGGGGACTGGGCCAATCCTCGGCTT
66 CGGA-CGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTT
* * * *
16572244 GCGCATTATGCCTCTCTGGCCGGCTCAACACCTGCACACTTGTTTCGTGGGTTGACTTAGGCATA
130 GCGCATTATGCCTCTCTGGCTGGCTCAACACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATA
* * *
16572309 CGGAGTGCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCCGACCGAACTGAGG
195 CGGAGTTCATTCCCAGTCTAAGCATACGGAGT-CATTCCCAGTCT-AGAT-CGA-CGGACCGAGG
* * * * *
16572374 GTTACGACAACAGGATCGACAGCATGCAGGAGGGA-CTG-GGCTGAT-CCTCGGCTTGCGCATTC
256 GTTGCGACAACAGGATCGACAGCACGCAGGGGGGATC-GAGTC-GATCCCT-GGCTTACGCATTC
* *
16572436 TGCCTCTCCGACCGGCTGAGT
318 TGCCTCTCCGACCGGATGAGC
* * * *
16572457 GCTCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGA
1 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * *
16572522 CGAATCGACGGTTGTGGCAGCGGGACTGGTAGCAGGTAGAGAGGGACCAGGCCGATCCCCGGCTT
66 CGGA-CGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTT
* ** * *
16572587 GCGCATTATGCCTCTCTGGCAGGCTCAATGCCCGTACACTCATTTTGTGGGTTGACTTAGGCATA
130 GCGCATTATGCCTCTCTGGCTGGCTCAACACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATA
* *
16572652 CAGAGTTCATTCCCAATCTAAG
195 CGGAGTTCATTCCCAGTCTAAG
16572674 ATCAGACCAG
Statistics
Matches: 711, Mismatches: 132, Indels: 70
0.78 0.14 0.08
Matches are distributed among these distances:
317 34 0.05
318 216 0.30
319 4 0.01
321 1 0.00
322 2 0.00
323 1 0.00
324 4 0.01
325 1 0.00
327 2 0.00
334 2 0.00
336 1 0.00
337 4 0.01
339 3 0.00
341 1 0.00
342 6 0.01
343 397 0.56
344 32 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (338 bp):
GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
CGGACGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTG
CGCATTATGCCTCTCTGGCTGGCTCAACACCCGTACACTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTCATTCCCAGTCTAGATCGACGGACCGAGGGTTGC
GACAACAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTACGCATTCTGCCTCTC
CGACCGGATGAGC
Found at i:16572223 original size:159 final size:157
Alignment explanation
Indices: 16571742--16572331 Score: 453
Period size: 159 Copynumber: 3.7 Consensus size: 157
16571732 TAGCACGCAG
* * * * * * * * *
16571742 GGGGGATCGAGTCGATCCCTGGCTT-ACACATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGC
1 GGGGGATCGGGTCGATCCCCGGCTTGA-GCATTATGCCTCTCCGGCTGGATGAGCACCCGTACGC
* * * * *
16571806 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGT
65 TCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* *
16571871 GTTGTGGCAATGGGACCGGCAGCCCACA-G-A
130 GTTGTGGCAACGGGA-C--CA-CCCGCAGGAA
* * * * * * *
16571901 GAGGGACCGGGTCGATCCCCGACTTGCGTATTATGCCTCTTCGGCT-GACTCAGCACCCGTACGC
1 GGGGGATCGGGTCGATCCCCGGCTTGAGCATTATGCCTCTCCGGCTGGA-TGAGCACCCGTACGC
* * * * * **
16571965 TCGTTTCATGGGTTGACTTATGCATACGGAGTTTATTCCCA-GTTTAAG-ATCAGACCAGACCGA
65 TCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGA
* * *
16572028 GGGTTGCGACAACAGGATCGACACCACGCAGG--
128 GGGTTGTGGCAACGGGA-C--CACC-CGCAGGAA
* * *
16572060 GGGGGATCGGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGCTGGATGAGCACCCGTAAGGT
1 GGGGGATCGGGTCGATCCCCGGCTTGAGCATTATGCCTCTCCGGCTGGATGAGCACCCGTACGCT
* *
16572125 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
66 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* *
16572190 TTGTGGCAGCGGGACCACCCGTAGGTAAA
131 TTGTGGCAACGGGACCACCCGCAGG--AA
* * * * * * * * * * * *
16572219 GGGGGA-CTGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAACACCTGCACAC
1 GGGGGATC-GGGTCGATCCCCGGCTTGAGCATTATGCCTCTCCGGCTGGATGAGCACCCGTACGC
* * * * *
16572283 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTGCATTCCCA-GTCTAAGC
65 TCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGC
16572332 ATACGGAGTG
Statistics
Matches: 337, Mismatches: 79, Indels: 30
0.76 0.18 0.07
Matches are distributed among these distances:
155 5 0.01
156 4 0.01
158 11 0.03
159 305 0.91
160 12 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GGGGGATCGGGTCGATCCCCGGCTTGAGCATTATGCCTCTCCGGCTGGATGAGCACCCGTACGCT
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAACGGGACCACCCGCAGGAA
Found at i:16572340 original size:26 final size:26
Alignment explanation
Indices: 16572304--16572356 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16572294 GTTGACTTAG
16572304 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
16572330 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
16572356 G
1 G
16572357 ATCCGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:16572640 original size:661 final size:660
Alignment explanation
Indices: 16571454--16572832 Score: 1702
Period size: 661 Copynumber: 2.1 Consensus size: 660
16571444 GGGCTGAATG
* *
16571454 CCCGCACA-CTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCTAGC
1 CCCGCA-AGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * ** **
16571518 CGGACTGAGGGTTGTGGTAGCGGGACTGACAGCACGCAGCGGGGGACTGAGCTGATCCCCGGCTT
65 CAGACCGAGGGTTGTGGCAGCGGGACTCACAGCACGCAAAGGGGGACTGAGCCAATCCCCGGCTT
* * * * * *
16571583 GCGCATTATGCCTCTCAGGCTGGCGGAACGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATA
130 GCGCATTATGCCTCTCAGGCCGGCGCAACACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * *
16571648 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGACCGAGG
195 CGGAGTGCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCCGACCGAACCGAGG
* * * *
16571713 GTTGCGGCAACAGGATCGATAGCACGCAGGGGGGATCGAGTCGATCCCTGGCTTACACATTCTGC
260 GTTACGACAACAGGATCGACAGCACGCAGGAGGGATCGAGTCGATCCCTGGCTTACACATTCTGC
* * *
16571778 CTCTCCGACCGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
325 CTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATT
* * * *
16571843 CCATGTCTAAGCCCCAGTCGGACAGAGTGTTGTGGCAATGGGACCGGCAGCCCACAGAGAGGGAC
390 CCATGTCTAAGCCCCAGACGAACAGAGTGTTGTGGCAACGGGACCGGCAGCACACAGAGAGGGAC
* * * * * * *
16571908 CGGGTCGATCCCCGACTTGCGTATTATGCCTCTTCGGCTGACTCAGCACCCGTACGCTCGTTTCA
455 CAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCAGACTCAACACCCGTACACTCATTTCA
* * * * *
16571973 TGGGTTGACTTATGCATACGGAGTTTATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGC-GA
520 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCTG-
* * * *
16572037 CAACAGGATCGACACCACGCAGGGGGGGA-TCGGGTCGATCCCCGGCTTGA-GCATTCTGCCTCT
584 CAACAGGATCGAAAACACGCA-GGGGGGACT-GGGTCGATCCCCAGCTT-ACGCATTCTGCCTAT
* *
16572100 CCGGCTGGA-TGAGCA
646 CC-GATCGACTGAGCA
* * *
16572115 CCCGTAAGGTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * *
16572180 AGACCGAGGGTTGTGGCAGCGGGAC-CACCCGTAGGTAAAGGGGGACTGGGCCAATCCTCGGCTT
66 AGACCGAGGGTTGTGGCAGCGGGACTCA-CAGCACGCAAAGGGGGACTGAGCCAATCCCCGGCTT
* * * *
16572244 GCGCATTATGCCTCTCTGGCCGGCTCAACACCTGCACACTTGTTTCGTGGGTTGACTTAGGCATA
130 GCGCATTATGCCTCTCAGGCCGGCGCAACACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATA
* *
16572309 CGGAGTGCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCCGACCGAACTGAGG
195 CGGAGTGCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCCGACCGAACCGAGG
* * * *
16572374 GTTACGACAACAGGATCGACAGCATGCAGGAGGGA-CTG-GGCTGAT-CCTCGGCTTGCGCATTC
260 GTTACGACAACAGGATCGACAGCACGCAGGAGGGATC-GAGTC-GATCCCT-GGCTTACACATTC
* * *
16572436 TGCCTCTCCGACCGGCTGAGTGCTCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTA
322 TGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTA
* * * ***
16572501 ATTCCATGTCTAAGCCCCAGACGAATC-GACG-GTTGTGGCAGCGGGACTGGTAGCAGGTAGAGA
387 ATTCCATGTCTAAGCCCCAGACGAA-CAGA-GTGTTGTGGCAACGGGACCGGCAGCACACAGAGA
* * **
16572564 GGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCTGGCAGGCTCAATGCCCGTACACTC
450 GGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTC-GGCAGACTCAACACCCGTACACTC
** *
16572628 ATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGT
514 ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGT
* * *
16572693 TGCTGTAGCAGGATCGAAAACACGCAGGGGTGACTGGGTCGATCCCCAGCTTACGCATTCTGCCT
579 TGCTGCAACAGGATCGAAAACACGCAGGGGGGACTGGGTCGATCCCCAGCTTACGCATTCTGCCT
*
16572758 ATCCGATCGACTGAGCG
644 ATCCGATCGACTGAGCA
* ** **
16572775 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16572833 ATACGTAATT
Statistics
Matches: 608, Mismatches: 98, Indels: 25
0.83 0.13 0.03
Matches are distributed among these distances:
659 5 0.01
660 101 0.17
661 499 0.82
662 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (660 bp):
CCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGCGGGACTCACAGCACGCAAAGGGGGACTGAGCCAATCCCCGGCTTG
CGCATTATGCCTCTCAGGCCGGCGCAACACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTGCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAAGATCCGACCGAACCGAGGG
TTACGACAACAGGATCGACAGCACGCAGGAGGGATCGAGTCGATCCCTGGCTTACACATTCTGCC
TCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTC
CATGTCTAAGCCCCAGACGAACAGAGTGTTGTGGCAACGGGACCGGCAGCACACAGAGAGGGACC
AGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCAGACTCAACACCCGTACACTCATTTCAT
GGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCTGCA
ACAGGATCGAAAACACGCAGGGGGGACTGGGTCGATCCCCAGCTTACGCATTCTGCCTATCCGAT
CGACTGAGCA
Found at i:16573202 original size:26 final size:26
Alignment explanation
Indices: 16573173--16573225 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16573163 GTTGAATTAG
*
16573173 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16573199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16573225 G
1 G
16573226 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16573544 original size:26 final size:26
Alignment explanation
Indices: 16573515--16573567 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16573505 GTTTGCTTAG
*
16573515 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16573541 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16573567 G
1 G
16573568 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16573924 original size:26 final size:26
Alignment explanation
Indices: 16573895--16573947 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16573885 GCAGACTTAG
16573895 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16573921 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16573947 G
1 G
16573948 ATTAGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16574207 original size:159 final size:158
Alignment explanation
Indices: 16573966--16574421 Score: 443
Period size: 159 Copynumber: 2.9 Consensus size: 158
16573956 GGATCGAAGA
** * * * *
16573966 TTGCGGCAGTAGGATCGACAGCACA-TA-GGGGACCAGGTCGATCCCTGGTTTGCGCATTCTGCC
1 TTGCGGCACCAGGATCGACAGCACACAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCC
* * * * * * *
16574029 TCTCCTGTTGGCTAAGCACCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGCGTTCATTC
66 TCTTCAGTCGGCTAAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
* *
16574094 CATGTCTAAGCCCCAACCGGACCCAGGG
131 CATGTCTAAGACCCAACCAGACCCAGGG
* * * * * * *
16574122 TTGTGGCAGCGGGATCGATAGCATACAGAGGGGGACCGGGTCGATCCCCGGCTTGAGCATTATGC
1 TTGCGGCACCAGGATCGACAGCACACA-AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGC
* ** * * **
16574187 CTCTTCAGTCGGCTCAGCACCCACACACTCATTTTATGGGTTGACTTCTGCATACAGAGTTCATT
65 CTCTTCAGTCGGCTAAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
* * ** * **
16574252 CCCA-GTCTGAGATCGGATCAGACTGAGGG
130 -CCATGTCTAAGACCCAACCAGACCCAGGG
* * *
16574281 TTGCGGCACCAGGATCGACAGCACACAAGGGGGATCGAGTCGATCCCCGGCTTGCGGATTCTGCC
1 TTGCGGCACCAGGATCGACAGCACACAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCC
** * * * * *
16574346 TCTTTGGCCTGCTGAGCGCCTGCACACTCGTTTCATGGGTTGCCTTAGGCATACAGAGTTCATTC
66 TCTTCAGTCGGCTAAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
16574411 C-TAGTCTAAGA
131 CAT-GTCTAAGA
16574422 TTTTGAGCCA
Statistics
Matches: 236, Mismatches: 58, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
156 20 0.08
157 2 0.01
158 92 0.39
159 119 0.50
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
TTGCGGCACCAGGATCGACAGCACACAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCC
TCTTCAGTCGGCTAAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
CATGTCTAAGACCCAACCAGACCCAGGG
Found at i:16574228 original size:721 final size:709
Alignment explanation
Indices: 16572718--16574253 Score: 1618
Period size: 721 Copynumber: 2.1 Consensus size: 709
16572708 GAAAACACGC
* * * * * * * *
16572718 AGGGGTGACTGGGTCGATCCCCAGCTTACGCATTCTGCCTATCC-GATCGACTGAGCGCCCGCAC
1 AGGGG-GACCGGGCCGATCCCCAGCTTACGCATTATGCCTTTCCAG-CCGACTCAGCACCCACAC
* ** * *
16572782 GCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGTAATTCATT
64 ACTCATTCCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGTAATTCATT
*
16572847 CCCAATCTAAGATCGGACCGAATCGAAGGTTACGGCAACAGGACCAGCAGCAAGATCGACAGCAC
129 CCCAATCTAAGATCGGACCGAATCGAAGGTTACGACAACAGGACCAGCAGCAAGATCGACAGCAC
* * * * * * *
16572912 ACAGGGCTGGACCGAGCCAATCCTCGGCTTGTGCATTCTACCTCTCCGACTAACTGAGCGCCCGC
194 ACAGGGCTAGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCAACTGAGCACCCAC
* * *
16572977 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGCCGAACC
259 ACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACC
* * * * *
16573042 AAAGGTTGTGGCAGTACGATCGACAGCGAGATTGACAGCAAGCAGAGGGGGACTGGGCCGATCCC
324 AAAGGTTGTGGCAATACGATCGACAGCGAGATCGACAGCAAGCAGAGAGGGACCGAGCCGATCCC
* ** * **
16573107 CGGGTGGCACATTATGCCTCTCTGGCCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTTGAATTA
389 CGGCTGGCACATTATGCCTCTCTAACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGCAGAATTA
* * * *
16573172 GGCATACGGAGTTTATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
454 GGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGA
* * ** * *
16573237 CCGAGGGCACAGTAGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCAT
519 CCGAGAGCACAGCAGCAGGATCGACAGCAC-CAGAGGGGACCGAGCCGATCCCCGGCTTACGCAT
* * * * * * **
16573302 TCTGCCTCTCCGGTCGGTTGAGCACCCGTATGCCCGTTTCGTGGGTTGGCTTAGGGATAGGGAGT
583 TCTGCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGT
* * * * * *
16573367 TCATTCCATGTCTATGCCGCAATCGGACCGAGGGTTATGGCAACGGGACCGGTAGCATGCAA
648 TCATTCCATGTCTAAGCCCCAACCGGACCCAGGGTTATGGCAACGGGACCGATAGCATACAA
* ** *
16573429 AGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTTTCCAGCCGACTCAGCGCCCGTACGC
1 AGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTTTCCAGCCGACTCAGCACCCACACAC
* *
16573494 TCGTTCCATGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG-AAGTTCATTC
66 TCATTCCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGTAA-TTCATTC
* * * * * * *** * * *
16573558 CCAGTCTAAGATTGGATCGGA-CTGAGGGTTGCGACGGTAGGACCAGCAGTAGGATCGACAGCAT
130 CCAATCTAAGATCGGACCGAATC-GAAGGTTACGACAACAGGACCAGCAGCAAGATCGACAGCAC
* * * * ***
16573622 GCAGGGC-AGACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCACCCAC
194 ACAGGGCTAGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCAACTGAGCACCCAC
*
16573686 ACGCTTGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGAC
259 ACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-AC
* * * * * * *
16573750 CGAGGGTTGTGGCAATAGGATCGGA-AGCGGGATCGGCAGCATGCAGAGAGGGACCGAGCTGATC
323 CAAAGGTTGTGGCAATACGATC-GACAGCGAGATCGACAGCAAGCAGAGAGGGACCGAGCCGATC
* * * *
16573814 CCTGGCTTGCGCATTATGCCTCTCTAACCGGCATCTCTGACCGACTTAGCGCACGCATGCTCGTT
387 CCCGGCTGGCACATTATGCCTCTCTAACCGG----T-TGA--G-C---GC-C-CGCACGCTCGTT
* * *
16573879 TTATGGGCAGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACTGAGTTCATTCCCAGTC
439 TCATGGGCAGAATTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *** * * * *
16573944 TAAGATTAGAACGGATCGAAGATTGCGGCAGTAGGATCGACAGCA-CATAGGGGACC-AGGTCGA
504 TAAGATCAGAACAGACCG-AGAGCACAGCAGCAGGATCGACAGCACCAGAGGGGACCGA-GCCGA
* * * * * *
16574007 TCCCTGGTTTGCGCATTCTGCCTCTCCTGTTGGCTAAGCACCTGCACGCCCGTTTCATGGGTTGG
567 TCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGG
* * * *
16574072 CTTAGGCATACAGCGTTCATTCCATGTCTAAGCCCCAACCGGACCCAGGGTTGTGGCAGCGGGAT
632 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCCAGGGTTATGGCAACGGGAC
*
16574137 CGATAGCATACAG
697 CGATAGCATACAA
* * * *
16574150 AGGGGGACCGGGTCGATCCCCGGCTTGA-GCATTATGCCTCTT-CAGTCGGCTCAGCACCCACAC
1 AGGGGGACCGGGCCGATCCCCAGCTT-ACGCATTATGCCT-TTCCAGCCGACTCAGCACCCACAC
** **
16574213 ACTCATTTTATGGG-TTGACTTCTGCATACAGAGTTCATTCC
64 ACTCATTCCATGGGTTTG-CTTAGGCATACAGAGTTCATTCC
16574254 CAGTCTGAGA
Statistics
Matches: 676, Mismatches: 126, Indels: 36
0.81 0.15 0.04
Matches are distributed among these distances:
708 1 0.00
709 179 0.26
710 165 0.24
711 6 0.01
713 1 0.00
714 3 0.00
716 1 0.00
717 1 0.00
720 6 0.01
721 212 0.31
722 84 0.12
723 17 0.03
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (709 bp):
AGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTTTCCAGCCGACTCAGCACCCACACAC
TCATTCCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGTAATTCATTCC
CAATCTAAGATCGGACCGAATCGAAGGTTACGACAACAGGACCAGCAGCAAGATCGACAGCACAC
AGGGCTAGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCAACTGAGCACCCACAC
GCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAA
AGGTTGTGGCAATACGATCGACAGCGAGATCGACAGCAAGCAGAGAGGGACCGAGCCGATCCCCG
GCTGGCACATTATGCCTCTCTAACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGCAGAATTAGG
CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACC
GAGAGCACAGCAGCAGGATCGACAGCACCAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCT
GCCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCCCCAACCGGACCCAGGGTTATGGCAACGGGACCGATAGCATACAA
Found at i:16575266 original size:158 final size:157
Alignment explanation
Indices: 16574786--16575283 Score: 539
Period size: 158 Copynumber: 3.1 Consensus size: 157
16574776 GCCAAAAAAA
* * * * * * *
16574786 ATACAGAGTTCATTCCCAGTCTAGGATCAGACCAGACCGAGTGTTACGGTAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGATAGC
* * *
16574851 ACGCAGGAGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCG
66 ACGCAGGGGGGATCGGGCCGAT-CCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
*
16574916 TACGCCCGTTTCATGGGTTGGCTTAGGC
130 TACGCTCGTTTCATGGGTTGGCTTAGGC
* * ** ** * * *
16574944 ATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGTGGGATCGGTAG
1 ATACGGAGTTCATTCCAAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGATAG
* * * * * * * *
16575008 CACGTAGATGGGGATCGGGCCGATCCCTGACTTGCGAATTATGCCTCTCTGACCGGCTCAACGCC
65 CACGCAG-GGGGGATCGGGCCGATCCC-GACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
16575073 CGCACGCTTGTTTCATGGGTTGACTTAGGC
128 CGTACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * *
16575103 ATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAAGATCGATAGC
1 ATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGATAGC
* * * * * *
16575168 ACGCAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCGCCGG
66 ACGCAGGGGGGATCGGGCCGATCC-CGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
* *
16575233 TACGCTCATTTCGTGGGTTGGCTTAGGC
130 TACGCTCGTTTCATGGGTTGGCTTAGGC
*
16575261 ATACGGAGTTCATTCCATGTCTA
1 ATACGGAGTTCATTCCAAGTCTA
16575284 TGCGTACGGA
Statistics
Matches: 270, Mismatches: 65, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
158 144 0.53
159 126 0.47
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
ATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGATAGC
ACGCAGGGGGGATCGGGCCGATCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGT
ACGCTCGTTTCATGGGTTGGCTTAGGC
Found at i:16575960 original size:159 final size:159
Alignment explanation
Indices: 16575748--16576486 Score: 491
Period size: 159 Copynumber: 4.6 Consensus size: 159
16575738 GGGGGACTGA
* * * *
16575748 GCCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGGCC-GACTGAGCACCCGCACGCCCGTTTCAT
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTTC-GGCCAG-CTCAGCACCCGCACGCCCATTTCAT
* * *
16575811 GGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCTCTAGCCGAACAGAGGGTTGTGGTA
64 GGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCTAGCCGAACAGAGGGTTGTGGTA
*
16575876 GCGGGACTGGCAGCACGTAGAGAGGGATCGG
129 GCAGGACTGGCAGCACGTAGAGAGGGATCGG
* * * * * *
16575907 GCCGATCCCCAGCTTACGCATTATGCCTCTTCTGTCAGCTCAGCACCCGCACGCTCATTTCGTGC
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTCATGG
* * * * * * * *
16575972 ATTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATC-AGATCGGACTGAGGGTTGCGGTA
66 GTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCTAG-CCGAACAGAGGGTTGTGGTA
* * * *
16576035 CCAGGA-TCGACAGTACAC-TAG-GGGGGATCGT
129 GCAGGACT-GGCAG--CACGTAGAGAGGGATCGG
* * * * * * * * * * *
16576066 GTCGATCCCCAGCTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCATGCCCGTTTCGTGG
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTCATGG
* * * * * **
16576131 GTTGGCTTAGGCATAGGGCA-TTGATTCCATGTCTAAGCCCTAGCCAGACCA-AGGGTTGTGCCA
66 GTTGACTTAGGCATACGG-AGTTCATTCCATGTCTAAGCTCTAGCC-GAACAGAGGGTTGTGGTA
*
16576194 GCAGGACTGGCAGCACGTCGA-AGGGGA-CTGG
129 GCAGGACTGGCAGCACGTAGAGA-GGGATC-GG
* * * * ** * *
16576225 GCTGATCCCCGGCTTGCGTATTATGCCTCTTCGGCCTGCTCAGTGCCCGTACGCTCATTTCATGG
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTCATGG
* * * * * *
16576290 GTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACTGGACCA-AGGGTTGTAGC
66 GTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCTAG-C-CGAACAGAGGGTTGTGGT
* * * * *
16576352 AGTAGGATTGACAGCACGTAGA-AGGGGAACCG
128 AGCAGGACTGGCAGCACGTAGAGA-GGGATCGG
** * ** * * ** * * * * * * ** *
16576384 GCTTATCCCCGGCTTGCTTATTCTACCTCTTCGATCGGTTAAGCACCCGGATGCTCGGTTCGTGG
1 GCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTCATGG
*
16576449 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16576487 ATACGGAGTT
Statistics
Matches: 450, Mismatches: 108, Indels: 44
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 15 0.03
159 411 0.91
160 18 0.04
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
GCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCCCATTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCTAGCCGAACAGAGGGTTGTGGTAGC
AGGACTGGCAGCACGTAGAGAGGGATCGG
Found at i:16576250 original size:318 final size:317
Alignment explanation
Indices: 16575665--16576486 Score: 870
Period size: 318 Copynumber: 2.6 Consensus size: 317
16575655 CCTAGTCTAA
* *
16575665 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGGATCGAGGGTTGCGACACCAGGATCGACA
** * *
16575730 GCATGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACC
66 GCACACAGGGGGGACTGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
* *
16575795 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCTCTAGCCGA
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGA
** *
16575860 ACAGAGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGAGGGATCGGGCCGATCCCCAGCTTACG
196 ACAGAGGGTTGTGCCAGCAGGACTGGCAGCACGTAGAGAGGGATCGGGCCGATCCCCAGCTTACG
* * *
16575925 CATTATGCCTCTTCTGTCAGCTCAGCACCCGCACGCTCATTTCGTGCATTGACTTAT
261 CATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCTCATTTCATGCATTGACTTAT
* **
16575982 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GGA-CTGAGGGTTGCGGTACCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGGATC-GAGGGTTGCGACACCAGGATCGA
* * * * **
16576045 CAGTACACTAGGGGGGA-TCGTGTCGATCCCCAGCTTGCGTATTCTGCCTCTCCGGCCGGTTGAG
64 CAGCACAC-AGGGGGGACT-GAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAG
* * * *
16576109 CGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGCA-TTGATTCCATGTCTAAGCCCTA
127 CACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG-AGTTCATTCCATGTCTAAGCCCTA
* * *
16576173 GCCAGACCA-AGGGTTGTGCCAGCAGGACTGGCAGCACGTCGA-AGGGGA-CTGGGCTGATCCCC
191 GCC-GAACAGAGGGTTGTGCCAGCAGGACTGGCAGCACGTAGAGA-GGGATC-GGGCCGATCCCC
* * * * ** * **
16576235 GGCTTGCGTATTATGCCTCTTCGGCCTGCTCAGTGCCCGTACGCTCATTTCATGGGTTGACTTAT
253 AGCTTACGCATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCTCATTTCATGCATTGACTTAT
* * * * ** *
16576300 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTG-TAGCAGTAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGGATCGAGGGTTGCGA-CACCAGGATCGAC
* * * * ** * ** * * ** ** *
16576364 AGCACGTAGAAGGGGAACCG-GCTTATCCCCGGCTTGCTTATTCTACCTCTTCGATCGGTTAAGC
65 AGCAC--ACAGGGGGGACTGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGC
* * * * * *
16576428 ACCCGGATGCTCGGTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16576487 ATACGGAGTT
Statistics
Matches: 422, Mismatches: 68, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
316 1 0.00
317 64 0.15
318 343 0.81
319 13 0.03
320 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGGATCGAGGGTTGCGACACCAGGATCGACA
GCACACAGGGGGGACTGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGA
ACAGAGGGTTGTGCCAGCAGGACTGGCAGCACGTAGAGAGGGATCGGGCCGATCCCCAGCTTACG
CATTATGCCTCTTCGGCCAGCTCAGCACCCGCACGCTCATTTCATGCATTGACTTAT
Found at i:16576488 original size:26 final size:26
Alignment explanation
Indices: 16576459--16576510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16576449 GTTGGCTTAG
16576459 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16576485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16576511 AATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16577407 original size:26 final size:26
Alignment explanation
Indices: 16577371--16577420 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16577361 GGCTTAGGCA
16577371 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCAT-TCTAAGCG
16577397 TACGGAGTTCATTCCCATTCTAAG
1 TACGGAGTTCATTCCCATTCTAAG
16577421 ATCAGAACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCATTCTAAGCG
Found at i:16577982 original size:26 final size:26
Alignment explanation
Indices: 16577933--16577985 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16577923 GTTGGCTTAG
*
16577933 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16577959 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16577985 G
1 G
16577986 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16579613 original size:26 final size:26
Alignment explanation
Indices: 16579561--16579613 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16579551 GTTGGCTTAG
* *
16579561 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
16579587 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
16579613 G
1 G
16579614 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:16580250 original size:26 final size:26
Alignment explanation
Indices: 16580220--16580272 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16580210 GTTGGCTTAG
16580220 GCATACGGAGTTCATTCCCT-GTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
*
16580246 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16580272 G
1 G
16580273 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16582249 original size:12 final size:12
Alignment explanation
Indices: 16582232--16582260 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
16582222 GATAAGTCTT
16582232 CACATAGGCCTC
1 CACATAGGCCTC
16582244 CACATAGGCCTC
1 CACATAGGCCTC
16582256 CACAT
1 CACAT
16582261 CATCCCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.41, G:0.14, T:0.17
Consensus pattern (12 bp):
CACATAGGCCTC
Found at i:16586859 original size:26 final size:26
Alignment explanation
Indices: 16586822--16586874 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16586812 GTTGACTTAG
16586822 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
16586848 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16586874 G
1 G
16586875 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16587208 original size:159 final size:157
Alignment explanation
Indices: 16586848--16587212 Score: 349
Period size: 159 Copynumber: 2.3 Consensus size: 157
16586838 CCCAGTCTAA
* * * *
16586848 GCATACGGAGTTCATTCCCATTCTAAGATCAGACTGGA-TCGAGGGTTGCGGCAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACT-GAGGGTTGCGGCAGTAGGACCAGC
* * * * * * *
16586912 AGCACGCAGGGGGACCGGGCCAATCCCCGGCTTGCGGATTCTACCTCTCCAGTCGGTTGAGCACC
65 AGCACGAAGGGGGACCGAGCCAATCCCCGGCTTACGCATTATACCTCTCCAGCCGGTTCAGCACC
* *
16586977 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 AGCACGCCCGTTTCATGGGTTGACTTAG
* * ** * ** ** * * * *
16587005 GCATAGGGAGTTCATTTCTTGTCTAAG-CCCCATCCAGACCGAGGGTTGTGGCAGTGGGACCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-TGGACTGAGGGTTGCGGCAGTAGGACCAGC
* ** * *
16587069 AGCACGTAAAGGGGGACCGAGCCGATCCTTGGCTTACGCATTATGCCTCTCC-GACCGGTTCAGT
65 AGCACG--AAGGGGGACCGAGCCAATCCCCGGCTTACGCATTATACCTCTCCAG-CCGGTTCAGC
* * *
16587133 GCCAGCACGCTCGTTTCGTGGGTTGACTTAG
127 ACCAGCACGCCCGTTTCATGGGTTGACTTAG
*
16587164 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGC
16587213 ATTAGCAGGA
Statistics
Matches: 157, Mismatches: 45, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
156 2 0.01
157 49 0.31
158 1 0.01
159 102 0.65
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGCGGCAGTAGGACCAGCA
GCACGAAGGGGGACCGAGCCAATCCCCGGCTTACGCATTATACCTCTCCAGCCGGTTCAGCACCA
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:16587733 original size:26 final size:26
Alignment explanation
Indices: 16587703--16587755 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16587693 GTTGACTTAG
16587703 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
16587729 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16587755 G
1 G
16587756 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16587981 original size:158 final size:157
Alignment explanation
Indices: 16587729--16588390 Score: 699
Period size: 159 Copynumber: 4.2 Consensus size: 157
16587719 CCCAATCTAA
* * * *
16587729 GCATACAGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCTCTAG-TCGGACCGAGGGTTGTGGCAGCGGGATCGA
* * *
16587792 CAGCATGCAAGGGGGACCGGGCCGATTCCCGACTTGCGCATTCTGCCTCTCCGGCTAG-CTGAGG
64 CAGCACGC-AGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC-AGACTGAGC
*
16587856 GCCCACACGCCCGTTCCATGGGTTGGCTTAG
127 GCCCACACGCCCGTTTCATGGGTTGGCTTAG
* * * *
16587887 GCATAGGGAGTCCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGTTGTGGCAGCGGGATCTG-C
1 GCATACGGAGTTCATTCCATGTCTAAGCTCTAGTCGGACCGAGGGTTGTGGCAGCGGGATC-GAC
* * * *
16587951 AGCACGCAGGGGGAGCCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGAATGAGCAC
65 AGCACGCAGGGGGA-CCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCAGACTGAGCGC
16588016 CCACACGCCCGTTTCATGGGTTGGCTTAG
129 CCACACGCCCGTTTCATGGGTTGGCTTAG
* * * * * * *
16588045 GTATACGGAGTTCATTCCATGTGTAAGCTCTAGTCGGACTGAAGGTTGTGGTAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCTCTAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACA
* * * * * * * *
16588110 GCATGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCGGCCAG-CTTAGCG
66 GCACG--CAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-CAGACTGAGCG
* * * *
16588174 CCCGCATGCTCGTTTCATGGGTTGACTTAG
128 CCCACACGCCCGTTTCATGGGTTGGCTTAG
* * * * ** *
16588204 GCATACGGAGTTCATTCCCA-GTGTAAGATCGAATCGGACCGAGGGTTGCAGTAG-GAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCTCTAGTCGGACCGAGGGTTGTGGCAGCG-GGATCGA
* * * * *
16588267 CAGCACGCAGGGTAGGACCGGGTCAATCCCCGACTTACGTATTCTGCCTCTCCGGCCGACTGAGC
64 CAGCACGCAGGG--GGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCAGACTGAGC
** * *
16588332 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
127 GCCCACACGCCCGTTTCATGGGTTGGCTTAG
16588363 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16588391 ATATGGAGTT
Statistics
Matches: 422, Mismatches: 67, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
157 16 0.04
158 187 0.44
159 207 0.49
160 12 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCTCTAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACA
GCACGCAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCAGACTGAGCGCCC
ACACGCCCGTTTCATGGGTTGGCTTAG
Found at i:16588392 original size:26 final size:26
Alignment explanation
Indices: 16588363--16588415 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16588353 GTTGGCTTAG
16588363 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16588389 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16588415 G
1 G
16588416 ATCGTGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16589455 original size:26 final size:26
Alignment explanation
Indices: 16589405--16589457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16589395 GTTGGCTTAG
* *
16589405 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16589431 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16589457 G
1 G
16589458 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16590475 original size:158 final size:158
Alignment explanation
Indices: 16590282--16590645 Score: 426
Period size: 158 Copynumber: 2.3 Consensus size: 158
16590272 ACCGCATGCC
* * * * * *
16590282 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGTG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAGGG
* *
16590347 TTGTGGCAG-TGGAACCGGCAGCACGCAGAGGGGACCGGGTCGATCCCCAGCTTGCACATTATGC
66 TTGTGGCAGCAGG-ACCGACAGCACGCAGAGGGGACCGGGTCGATCCCCAGCTTGCACATTATGC
* * ** *
16590411 CTCTCTGGTCGGCTCAATGCCCACACGTT
130 CTCTCCGGTAGGCTCAACACCCACACGCT
* ** *
16590440 CGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAAACCAAGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAAACCAAGG
* ** * * * * * *
16590504 GTTGTGGTAGCAGGATTGATAGCACGTAGGGGGGAGCGGGTCGATCCCCGGCTTGCACATTCTGC
65 GTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGTCGATCCCCAGCTTGCACATTATGC
* *
16590569 CTCTCCGGTAGGCTGAGCACCCACACGCT
130 CTCTCCGGTAGGCTCAACACCCACACGCT
* *
16590598 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCATGCCTAAGC
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16590646 ATACGGAGTT
Statistics
Matches: 171, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.02
158 163 0.95
159 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAGGG
TTGTGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCC
TCTCCGGTAGGCTCAACACCCACACGCT
Found at i:16591015 original size:26 final size:26
Alignment explanation
Indices: 16590986--16591038 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16590976 GTTGACTTAG
* *
16590986 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
16591012 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
16591038 G
1 G
16591039 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:16592547 original size:159 final size:157
Alignment explanation
Indices: 16592196--16592691 Score: 493
Period size: 159 Copynumber: 3.1 Consensus size: 157
16592186 CTAAGCGTAA
** **
16592196 GGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTACGGCAGCAGGATCGACAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * * * *
16592260 CATGGTGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGCACCCTACA
65 CA-GGGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTGAGCGCCC-GCA
* *
16592325 C-C-CGTTTCGTGGGTTGGCTTAGGCATAG
128 CGCTCGTTTCGTGGGTTGACTTAGGCATAC
** * ** * *
16592353 GGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGTAGTGGGACCGACAGCAT
1 GGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
* *
16592416 GCAGAAGGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGC
64 GCAG--GGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGC
* * *
16592481 ACGCTCATTTCGTGGGTTGACTTATGCGTAC
127 ACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
16592512 GGAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAGAATCGACAGCACAC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * *
16592577 AGTGAGGGACCGAGCCGATCCTCGGCTTGA-GCATTCTGTCTC-TCTGGTCGACTGAGCGCCCGC
66 AG-G-GGGACCGGGTCGATCCTCGGCTT-ACGCATTATGCCTCTTC-GGCCGGCTGAGCGCCCGC
* *
16592640 ACGCTCGTTTCATGGGTTAACTTAGGCATAC
127 ACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
16592671 AGAGTTCATCCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
16592692 CATACGGAGT
Statistics
Matches: 274, Mismatches: 53, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
156 4 0.01
157 51 0.19
158 55 0.20
159 160 0.58
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
AGGGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATAC
Found at i:16592695 original size:26 final size:26
Alignment explanation
Indices: 16592665--16592717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16592655 GTTAACTTAG
16592665 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16592691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16592717 G
1 G
16592718 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16592874 original size:184 final size:185
Alignment explanation
Indices: 16592509--16592876 Score: 415
Period size: 184 Copynumber: 2.0 Consensus size: 185
16592499 GACTTATGCG
**
16592509 TACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCAGAATCGACAGCA
1 TACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGAATCGACAGCA
* ** * * *
16592574 CACAGTGAGGGACCGAGCCGATCCTCGGCTTGAGCATTCTGTCTCTCTGGTCGACTGAGCGCCCG
66 CACAGTGAGGGACCGAGCCGATCCTCGGATTGAGCATTCTACCTCTCCGGTCGACTGAACGCCCA
* *
16592639 CACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
131 CACGCTCGTTTCATGGGATAACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCA
* * * * * *
16592694 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGTAGGATC-AGCAGC
1 TACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGAATCGA-CAGC
* * *
16592758 ACA-TG-GAGGGGACTGGGCCGATCCTCGGATT-ACGCATTCTACCTCTCCGGTC-AGCTGAACG
65 ACACAGTGA-GGGACCGAGCCGATCCTCGGATTGA-GCATTCTACCTCTCCGGTCGA-CTGAACG
* * ** ** *
16592819 GCCACACAGC-CGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGC
127 CCCACAC-GCTCGTTTCATGGGATAACTTAGGCATACAGAGTTCATCCCAAGTCTAAGC
16592877 CCCAGTCGAA
Statistics
Matches: 152, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
183 4 0.03
184 89 0.59
185 59 0.39
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (185 bp):
TACGGAGTTAATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGAATCGACAGCA
CACAGTGAGGGACCGAGCCGATCCTCGGATTGAGCATTCTACCTCTCCGGTCGACTGAACGCCCA
CACGCTCGTTTCATGGGATAACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCA
Found at i:16593228 original size:12 final size:12
Alignment explanation
Indices: 16593211--16593240 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16593201 GAGGGTTGTG
16593211 GCAGCAGGACCA
1 GCAGCAGGACCA
*
16593223 GCAGCAGGATCA
1 GCAGCAGGACCA
16593235 GCAGCA
1 GCAGCA
16593241 TGCATAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.33, T:0.03
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:16593362 original size:26 final size:26
Alignment explanation
Indices: 16593332--16593384 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16593322 GTTGACTTAG
16593332 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16593358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16593384 G
1 G
16593385 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16593630 original size:666 final size:658
Alignment explanation
Indices: 16592449--16594016 Score: 1691
Period size: 666 Copynumber: 2.4 Consensus size: 658
16592439 TCGGCTTACG
* * * * * * * * * * * *
16592449 CATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCGTACGG
1 CATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAAGA
* ** * * * *
16592514 AGTTAATTCCCA-GTCTAAG-ATCAGACCAGACCGAAGGTTGTGGCAGC-AGAATCGACAGCACA
66 AGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGAGGACCGACAGCACG
* * * * * * * * * ** *
16592576 CAGTGAGGGACCGAGCCGATCCTCGGCTTGAGCATTC-TGTCTCTCTGGTC-GACTGAGCGCCCG
129 CAGAGGGGGACTGGGTCAATCCCCGGCTTGCGCA-TCATGCCTCTCCAGCCAG-CTGAGCG-CCG
*
16592639 CACGCTCGTTTCATGGGTTAACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGCATACGGAGTT
191 CACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * *
16592703 CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGTAGGATCAGCAGCACATGGAGGG
255 CATTCCCAGTCTAAGATCAGACCGGACCGAGGCTTACGACAGTAGCATCAGCAGCACATGGAGGG
* * *
16592768 GACTGGGCCGATCCTCGGATTACGCATTCTACCTCTCCGGTCAGCTGAACGGCCACACAGCCGTT
320 GACCGGGCCGATCCTCGGATTACGCATTCTACCTCTCCAGCCAGCTGAACGGCCACACAGCCGTT
*
16592833 TCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTCGAACCGAGGGTTGT
385 TCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGAACCGAGGGTTGT
* * * *
16592898 GGCAGCAGGGCCTGCAGCATGCAGAGGGGGACCAGGTCGATCCCGGCTTGCACATTATGCCTCTC
450 GGCAGCAGGGACTGCAGCATGCAGAGGGGGACCAGGCCGATCCCGACTGGCACATTATGCCTCTC
16592963 CGATCGGCTCAACGCCCGCACGC-TCGTCTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCT
515 CGATCGGCTCAACGCCCGCACGCTTC-TCTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCT
* * * * * * * *
16593027 GTCTAAGA-TCGACCAAACCGAGGGTTGC-GCAGCAGGATCGACAACACGTAG-GGGACCGGGCC
579 ATCTAAGATTAGACCAAACCAAGGGTTGCAACAGCAGGATCAACAACACGCAGTGGGACAGGACC
*
16593089 GATCCTCGACTCGCA
644 GATCCCCGACTCGCA
* * * * * *
16593104 CATTCTTCCTCTCCGACCGGCTGAGCGCCTGCACACTCATTTCGTGGGTTGGCTTAGGCATATGA
1 CATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAAGA
*
16593169 AGTTCATTCCATGTCTAAGCCCCCGCCAGACCGAGGGTTGTGGCAGC-AGGACCAGCAGCAGGAT
66 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGGACC-G-A-CA-G--
* * *
16593233 CAGCAGCATGCATAGGGGGATTGGG-CTAATCCCCGGCTTGCGCATCATGCCTTTCC-GACCATC
125 CA-C-GCA-G---AGGGGGACTGGGTC-AATCCCCGGCTTGCGCATCATGCCTCTCCAG-CCAGC
* *
16593296 TGAGCGACCGTACGCTAGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
182 TGAGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* *
16593361 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGCTTACGACAGTAGCATCGGCA-CA
246 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGCTTACGACAGTAGCATCAGCAGCA
* * * ** * * * *
16593425 CGCA-GG-GGGGACCGGGCCGATCC-CTTGCTTGCGCATTCTGTCTCTCCAGCCGGTTGAGC-TC
311 --CATGGAGGGGACCGGGCCGATCCTC-GGATTACGCATTCTACCTCTCCAGCCAGCTGAACGGC
* ** * * **
16593486 TCGCATGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCG
373 -CACACAGCCGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCG
* * * * *
16593551 GACCGAGGGTTGTGGTAGC-GGGATTGGCAGCA-GCAGAGGGGGATCGGGCCGATCCCCGACTGG
437 AACCGAGGGTTGTGGCAGCAGGGACT-GCAGCATGCAGAGGGGGACCAGGCCGAT-CCCGACTGG
** ** * * * *
16593614 TGCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCTTCTTTCGTGTGTTGACTTAGGCATGC
500 CACATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTTCTCTCATGGGTTGACTTAGGCATAC
* * * * *
16593679 GGAGTTCATTCCCTATCTAAGATTAGACCAGACTAAGGGTTGCAACAGCAGGATCAACAGCATGC
565 GAAGTTCATTCCCTATCTAAGATTAGACCAAACCAAGGGTTGCAACAGCAGGATCAACAACACGC
* * *
16593744 AGTGGGACAGGACCGATCCCCGGCTTGCG
630 AGTGGGACAGGACCGATCCCCGACTCGCA
* * *
16593773 CATTCTGCCTCTCTGACCAGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGG
1 CATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAAGA
* *
16593838 AGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCTGCGAGGACCGACAGCACGCA
66 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGGACCGACAGCACGCA
* * *
16593903 GAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCAGCTCAGCGCCAGCACG
131 GAGGGGGACTGGGTCAATCCCCGGCTTGCGCATCATGCCTCTCCAGCCAGCTGAGCGCC-GCACG
* * * *
16593968 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
195 CTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
16594017 ATCGGATCGG
Statistics
Matches: 760, Mismatches: 120, Indels: 63
0.81 0.13 0.07
Matches are distributed among these distances:
654 3 0.00
655 93 0.12
656 3 0.00
657 3 0.00
658 96 0.13
659 3 0.00
661 3 0.00
662 4 0.01
663 3 0.00
664 3 0.00
665 24 0.03
666 207 0.27
667 166 0.22
668 22 0.03
669 121 0.16
670 6 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (658 bp):
CATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAAGA
AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGAGGACCGACAGCACGCA
GAGGGGGACTGGGTCAATCCCCGGCTTGCGCATCATGCCTCTCCAGCCAGCTGAGCGCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGACCGAGGCTTACGACAGTAGCATCAGCAGCACATGGAGGGGACCGG
GCCGATCCTCGGATTACGCATTCTACCTCTCCAGCCAGCTGAACGGCCACACAGCCGTTTCGTGG
GATGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGC
AGGGACTGCAGCATGCAGAGGGGGACCAGGCCGATCCCGACTGGCACATTATGCCTCTCCGATCG
GCTCAACGCCCGCACGCTTCTCTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTATCTAAG
ATTAGACCAAACCAAGGGTTGCAACAGCAGGATCAACAACACGCAGTGGGACAGGACCGATCCCC
GACTCGCA
Found at i:16594018 original size:317 final size:316
Alignment explanation
Indices: 16593358--16594175 Score: 859
Period size: 315 Copynumber: 2.6 Consensus size: 316
16593348 CCCAGTCTAA
** ** * * * * * **
16593358 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGACTGGACCGAGGCTTACGACAGTAGCATCGGC
1 GCATACGGAGTTCATTCCCTA-TCTAAGATCAGACCAGACTAAGGGTTGCAACAGCAGGATCAAC
* * ** * * ** *
16593422 A-CACGCAGGGGGGACCGGGCCGATCCCTTGCTTGCGCATTCTGTCTCTCC-AGCCGGTTGAGCT
65 AGCACACAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCCGCCTCTCCGA-CCGACTGAGCA
* * ** * * *
16593485 CTCGCATGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCC
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCC
* ** * *
16593550 GGACCGAGGGTTGTGGTAGCGGGATTGGCAGCAGCAGAGGGGGATCGGGCCGATCCCCGACTGGT
194 AGACCGAGGGTTGTGGTAGCGGGACCGACAGCAGCAGAGGGGGATCGGGCCGATCCCCGACTGGC
* * * * *
16593615 GCATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCTTCTTTCGTGTGTTGACTTAG
259 GCATTATGCCTCTCCGACCAGCTCAGCGCCAGCACGCTTCTTTCGTGGGTTGACTTAG
* *
16593673 GCATGCGGAGTTCATTCCCTATCTAAGATTAGACCAGACTAAGGGTTGCAACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCTATCTAAGATCAGACCAGACTAAGGGTTGCAACAGCAGGATCAACA
** * * * *
16593738 GCATGCA-GTGGGA-CAGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACC-AGCTGAGCA
66 GCACACAGGGGGGACCAGG-CCGATCCCCAGCTTGCGCATTCCGCCTCTCCGACCGA-CTGAGCA
16593800 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCC
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *
16593865 AGACTGAGGGTTGTGGCT-GCGAGGACCGACAGCACGCAGAGGGGGA-CTGGGTCGATCCCCGGC
194 AGACCGAGGGTTGTGG-TAGCG-GGACCGACAGCA-GCAGAGGGGGATC-GGGCCGATCCCCGAC
*
16593928 TTGCGCATTATGCCTCTCC-AGCCAGCTCAGCGCCAGCACGC-TCGTTTCGTGGGTTGACTTAG
255 TGGCGCATTATGCCTCTCCGA-CCAGCTCAGCGCCAGCACGCTTC-TTTCGTGGGTTGACTTAG
* * * * ** *
16593990 GCATACGGAGTTCATT-CCTAGTCTAAGATCGGATCGGACTGAGGGTTGCAGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCTA-TCTAAGATCAGACCAGACTAAGGGTTGCAACAGCAGGATCAAC
** * * *
16594054 AGCACACAGGGGGGACCAGGTTGATCTCCAGCTTGCGCATTCCGCCTCTCCGAGCGACTGAGCGC
65 AGCACACAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCCGCCTCTCCGACCGACTGAGCAC
* * * *
16594119 CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACA-GAGTTTATTCCATGCCTAAGC
130 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGC
16594176 ATACGGAGTT
Statistics
Matches: 419, Mismatches: 68, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
314 3 0.01
315 164 0.39
316 25 0.06
317 130 0.31
318 91 0.22
319 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCTATCTAAGATCAGACCAGACTAAGGGTTGCAACAGCAGGATCAACA
GCACACAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCCGCCTCTCCGACCGACTGAGCACC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGTTGTGGTAGCGGGACCGACAGCAGCAGAGGGGGATCGGGCCGATCCCCGACTGGCGC
ATTATGCCTCTCCGACCAGCTCAGCGCCAGCACGCTTCTTTCGTGGGTTGACTTAG
Found at i:16594147 original size:158 final size:160
Alignment explanation
Indices: 16593423--16594165 Score: 629
Period size: 158 Copynumber: 4.7 Consensus size: 160
16593413 AGCATCGGCA
* ** * * * * * *
16593423 CACGCAG-GGGGGACCGGGCCGATCCCTTGCTTGCGCATTCTGTCTCTCC-AGCCGGTTGAGCTC
1 CACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCCAGCTCAGCGC
* * * * * * *
16593486 TCGCATGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCG
66 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCCCCAGCCA
* ** * * *
16593551 GACCGAGGGTTGTGGTAGCGGGATTGGCAG
131 GACTGAGGGTTGCAGTAGCAGGATCGACAG
* * * * * * * *
16593581 CA-GCAGAGGGGGATCGGGCCGATCCCCGACTGGTGCATTATGCCTCTCCGA-TCGGCTCAGTGC
1 CACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCCAGCTCAGCGC
* * * ***
16593644 CCGCACGCTTC-TTTCGTGTGTTGACTTAGGCATGCGGAGTTCATTCCCTA-TCTAAG-ATTAGA
66 CCGCACGC-TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGCCCCAG-
* ** *
16593706 CCAGACTAAGGGTTGCAACAGCAGGATCAACAG
128 CCAGACTGAGGGTTGCAGTAGCAGGATCGACAG
* * * * * *
16593739 CATGC--AGTGGGA-CAGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCTGA-CCAGCTGAGCA
1 CACGCAGAGGGGGACCAGG-CCGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCCAGCTCAGCG
* *
16593800 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCC-ATGTCTAAGCCCCAGC
65 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTA-GTCTAAGCCCCAGC
** *
16593864 CAGACTGAGGGTTGTGGCT-GCGAGGACCGACAG
129 CAGACTGAGGGTTGCAG-TAGC-AGGATCGACAG
** *
16593897 CACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCC-AGCCAGCTCAGCGC
1 CACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCCAGCTCAGCGC
* * * ** * *
16593961 CAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCGGATC
66 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCCCCAG-CC
*
16594025 GGACTGAGGGTTGCAGTAGCAGGATCGACAG
130 AGACTGAGGGTTGCAGTAGCAGGATCGACAG
* ** * * ** * *
16594056 CACACAG-GGGGGACCAGGTTGATCTCCAGCTTGCGCATTCCGCCTCTCCGAGCGA-CTGAGCGC
1 CACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCCAGCTCAGCGC
* * *
16594119 CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCC
66 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
16594166 ATGCCTAAGC
Statistics
Matches: 464, Mismatches: 100, Indels: 42
0.77 0.17 0.07
Matches are distributed among these distances:
155 1 0.00
156 6 0.01
157 107 0.23
158 206 0.44
159 32 0.07
160 109 0.23
161 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (160 bp):
CACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCCAGCTCAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCCCCAGCCA
GACTGAGGGTTGCAGTAGCAGGATCGACAG
Found at i:16594555 original size:26 final size:26
Alignment explanation
Indices: 16594525--16594577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16594515 GTTGACTTAG
* *
16594525 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
*
16594551 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
16594577 G
1 G
16594578 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:16595032 original size:158 final size:157
Alignment explanation
Indices: 16594551--16595050 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 157
16594541 CCCAGTCTAA
* * *
16594551 GCATACGGAGCTCATTCC-CAGTCTAAGATCAAACCGATCGAGGGTTGCGGCAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCAGACCGATTGAGGGTTGCGGCAGCAGGATCAGCA
* * * * *
16594615 GCACGCAGGGGGGACCAACCCAATCCTCGGCTTGCGCATTTTGCCTCTCC-AGTCGGCTGAGCAC
65 GCACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGA-TCGGCTGAGCGC
16594679 CCGCACG-TCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * ** * * * * ** * * *
16594708 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGTGGCGGGACCTGCA
1 GCATACGGAGTTCATTCCACGTCTAAG-ATCAGACCGATTGAGGGTTGCGGCAGCAGGATCAGCA
* * * * * * * *
16594773 TCACGCAGAAGGGGACCGAGCCGATCCCCGGTTTGTGCATTATGCCTCTTCGATCGGCTCAACGC
65 GCACGCAG-GGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
* * * *
16594838 CCGTACGCTCGTTTTGTGGGTTGACTTAT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
16594867 ACGTACGGAGTTCATTCC-CAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCAGACC-GATTGAGGGTTGCGGCAGCAGGATCAGC
* * * * * * * *
16594931 AGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCGC
64 AGCACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGC
* *
16594996 CTGCGCGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
16595025 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
16595051 ACATACGGAG
Statistics
Matches: 261, Mismatches: 74, Indels: 15
0.75 0.21 0.04
Matches are distributed among these distances:
157 23 0.09
158 122 0.47
159 114 0.44
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCACGTCTAAGATCAGACCGATTGAGGGTTGCGGCAGCAGGATCAGCAG
CACGCAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16595062 original size:26 final size:26
Alignment explanation
Indices: 16595026--16595077 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16595016 TTGGCTTAGG
16595026 CATACGGAGTTCATT-CCACGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
16595052 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
16595078 ATTTTTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:16596400 original size:159 final size:158
Alignment explanation
Indices: 16596149--16596441 Score: 394
Period size: 159 Copynumber: 1.8 Consensus size: 158
16596139 GTGTTGCGGC
*
16596149 AGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAG
1 AGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCTGCTTGCGCATTATGCCTCTCCAG
* * * * * * * *
16596214 CCGGCTGAGCACCCGCATGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTC
66 CCAGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
16596278 TAAGCCCCAGCCAGACCGAGGGTTGTAGT
130 TAAGCCCCAGCCAGACCGAGGGTTGTAGT
** *
16596307 AGCAGGATCGGCAGCACGTGGAGGGGGACCGGGCTGATCCCC-GACTTGCGCATTATGCCTCTCC
1 AGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCTG-CTTGCGCATTATGCCTCTCC
* * *
16596371 GGCCATCTGAGCGA-CCATACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
64 AGCCAGCTGAGC-ACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
16596435 TCTAAGC
128 TCTAAGC
16596442 ATACGGAGTT
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
158 20 0.17
159 92 0.79
160 4 0.03
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (158 bp):
AGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCTGCTTGCGCATTATGCCTCTCCAG
CCAGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
AAGCCCCAGCCAGACCGAGGGTTGTAGT
Found at i:16596445 original size:26 final size:26
Alignment explanation
Indices: 16596414--16596466 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16596404 GTTGACTTAG
16596414 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16596440 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16596466 G
1 G
16596467 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16596511 original size:342 final size:339
Alignment explanation
Indices: 16595752--16596782 Score: 1375
Period size: 342 Copynumber: 3.0 Consensus size: 339
16595742 TAGGAATATA
* * *
16595752 GAGTTCATTCCCAATCTAAGATCAACTGGATCGAGGGTTACGGTAGTAGGATCGACAGCACGTA-
1 GAGTTCATTCCCAATCTAAGATCAACTGGAACGA-GGTTACGGTAGTAGGATCGGCAGCACGCAG
* * * * *
16595816 AGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCT-CTGACCGGCTGAGCGCCCGCACGC
65 GGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAG-CCGGCTGAGCGCCCGCATGG
* *
16595880 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTTCGACCGAGG
129 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGACCGAGG
* * * *
16595945 GTTGTAGCAGCAGGACCGGCAACTGGATCGACAGCACGCGGAAGGGGACCGGGCTGATCCCCGGC
193 GTTGT------AGTA---GC-A--GGATCGGCAGCACGTGGAGGGGGACCGGGCTGATCCCCGGC
*
16596010 TTGCGCATTATGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
246 TTGCGCATTATGCCTCTCCGGCC-ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* *
16596075 TACGGAGTTCATCACCAATCTAAGCATACG
310 TACGGAGTTCATCCCCAGTCTAAGCATACG
* * ** * * *
16596105 GAGTTCATTCCCATTCTTAGATCAAAAGGAACGAGTGTTGCGGCAGCAGGATCGGCAGCACGCAG
1 GAGTTCATTCCCAATCTAAGATCAACTGGAACGAG-GTTACGGTAGTAGGATCGGCAGCACGCAG
*
16596170 GGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCACCCGCATGGT
65 GGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGGT
16596235 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
130 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GACCGAGGG
*
16596300 TTGTAGTAGCAGGATCGGCAGCACGTGGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGC
194 TTGTAGTAGCAGGATCGGCAGCACGTGGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGC
* **
16596365 CTCTCCGGCCATCTGAGCGACCATACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
259 CTCTCCGGCCA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
16596430 CCCAGTCTAAGCATACG
323 CCCAGTCTAAGCATACG
* *
16596447 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGCTTACGGTAGTAGGATCGGCA-CACGCA
1 GAGTTCATTCCCAATCTAAGATCA-ACTGGAACGAGG-TTACGGTAGTAGGATCGGCAGCACGCA
** *
16596511 GGGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAATCGGTTGAGCGCCCGCATGG
64 GGGGGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGG
16596576 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
129 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GACCGAGG
* * * * * ** *
16596641 GTTGTGGTAGCGGGATCGGCAGCACGTAGAGGGGGATCGTGCCAATCCCCGGCTAGCGCATTATG
193 GTTGTAGTAGCAGGATCGGCAGCACGTGGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATG
* ** * ** * *
16596706 CCTCTCCGATCGGCTCAATGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAT
258 CCTCTCCG-GCCACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
16596771 TCCCAGTCTAAG
322 CCCCAGTCTAAG
16596783 ATTAGATCGG
Statistics
Matches: 607, Mismatches: 63, Indels: 27
0.87 0.09 0.04
Matches are distributed among these distances:
341 1 0.00
342 397 0.65
343 26 0.04
344 1 0.00
345 2 0.00
348 3 0.00
352 1 0.00
353 53 0.09
354 121 0.20
355 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (339 bp):
GAGTTCATTCCCAATCTAAGATCAACTGGAACGAGGTTACGGTAGTAGGATCGGCAGCACGCAGG
GGGGACCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGGTC
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGACCGAGGGTT
GTAGTAGCAGGATCGGCAGCACGTGGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCT
CTCCGGCCACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGCATACG
Found at i:16596741 original size:159 final size:160
Alignment explanation
Indices: 16596440--16597257 Score: 738
Period size: 157 Copynumber: 5.2 Consensus size: 160
16596430 CCCAGTCTAA
* * * * *
16596440 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA-CTGGACCGAGGCTTACGGTAGTAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATC-GGACCGAGGGTTGCAGTAGCAGGATCG
* * * *
16596502 GCA-CACGCAG-GGGGGACCGGGCCGATCCCCT-GCTTGCGCATTCTGCCTCTCCAATCGGTTGA
64 ACAGCACGCAGAGGGGGACCGGGCCGAT-CCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
* *
16596564 GCGCCCGCATGGTCGTTTCGTGGGTTGGCTTAG
128 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * *
16596597 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCAGTAGCAGGATCGAC
* * * * * * * * * **
16596661 AGCACGTAGAGGGGGATCGTGCCAATCCCCGGCTAGCGCATTATGCCTCTCCGATCGGCTCAATG
66 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
**
16596726 CCCGCACGCTCGTTTCGTGGGTTAACTTAG
131 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
16596756 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGATCGGACTGAGGGTTGCAGCAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGTTGCAGTAGCAGGATCGA
* * * * * * *
16596819 CAGCATGC--AGGGTGACAGGGCTGATCCCTGGCTTGCGCGTTCTGCCTCTCTGACCAGCTGAGC
65 CAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
16596882 ACCCGCACGCCCATTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * *
16596913 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGA-CGGATCGAGGGTTGTGGCT-GCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCAG-TAGCAGGATCGA
* * * * * * *
16596976 CAGCACGCAGAGGGGGACCGGGTCGGTCCTTGGCTTGCGTATTATGCCTCTCC-AGCCAGCTCAG
65 CAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAG
* * * * *
16597040 TGCCAGCACGTTCGTTTCATGGGTTGACTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*** *
16597072 GCATACGGAGTTCATTCC-TAGTCTAAG-ATTGGATCGGACTGAGGGTTGCAGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATCGGACCGAGGGTTGCAGTAGCAGGATCGA
* * * * * *
16597135 CAGCA--CACAGGGGGATCGGGTCGATCTCTGGCTTGCACATTCTGCCTCTCCGACCGACTGAGC
65 CAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
*
16597198 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16597229 GCATACGGAGTTCATCACCA-GTCTAAGCA
1 GCATACGGAGTTCAT-TCCATGTCTAAGCA
16597258 TACGGAGTTC
Statistics
Matches: 520, Mismatches: 120, Indels: 41
0.76 0.18 0.06
Matches are distributed among these distances:
156 6 0.01
157 253 0.49
158 27 0.05
159 231 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCAGTAGCAGGATCGAC
AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16597022 original size:316 final size:314
Alignment explanation
Indices: 16596440--16597256 Score: 1018
Period size: 316 Copynumber: 2.6 Consensus size: 314
16596430 CCCAGTCTAA
* * * * * * *
16596440 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGCTTACGGTAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATC-GGACTGAGGGTTGCAGTAGCAGGATCGAC
* * * *
16596504 A-CACGCAGGGGGGACCGGGCCGATCCCCT-GCTTGCGCATTCTGCCTCTCCAATCGGTTGAGCG
65 AGCACGCA-GGGGGA-CGGGCTGAT-CCCTGGCTTGCGCATTCTGCCTCTCCGA-CCGCTGAGCG
* * * *
16596567 CCCGCATGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
126 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
* * * * *
16596632 GGACCGAGGGTTGTGGTAGCGGGATCGGCAGCACGTAGAGGGGGATCGTGCCAATCCCCGGCTAG
191 GGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTAG
* * * *
16596697 CGCATTATGCCTCTCC-GATCGGCTCAATGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
256 CGCATTATGCCTCTCCAG-CCAGCTCAATGCCAGCACGCTCGTTTCATGGGTTAACTTAG
* *
16596756 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTTGCAGTAGCAGGATCGACA
* * * * *
16596821 GCATGCAGGGTGACAGGGCTGATCCCTGGCTTGCGCGTTCTGCCTCTCTGACCAGCTGAGCACCC
66 GCACGCAGGGGGAC-GGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACC-GCTGAGCGCCC
*
16596886 GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGA
129 GCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGA
* * ** ** *
16596951 TCGAGGGTTGTGGCT-GCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGGTCCTTGGCTTGCG
194 CCGAGGGTTGTGG-TAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTAGCG
* * * *
16597015 TATTATGCCTCTCCAGCCAGCTCAGTGCCAGCACGTTCGTTTCATGGGTTGACTTAG
258 CATTATGCCTCTCCAGCCAGCTCAATGCCAGCACGCTCGTTTCATGGGTTAACTTAG
* *
16597072 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACTGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTTGCAGTAGCAGGATCGACA
* * *
16597137 GCACACAGGGGGATCGGG-TCGATCTCTGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGCAGGGGGA-CGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCG-CTGAGCGCC
* *
16597201 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCACCA-GTCTAAGC
128 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
16597257 ATACGGAGTT
Statistics
Matches: 432, Mismatches: 58, Indels: 22
0.84 0.11 0.04
Matches are distributed among these distances:
315 8 0.02
316 412 0.95
317 12 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTTGCAGTAGCAGGATCGACA
GCACGCAGGGGGACGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACC
GAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGGCTAGCGCAT
TATGCCTCTCCAGCCAGCTCAATGCCAGCACGCTCGTTTCATGGGTTAACTTAG
Found at i:16597425 original size:184 final size:183
Alignment explanation
Indices: 16597072--16597440 Score: 472
Period size: 184 Copynumber: 2.0 Consensus size: 183
16597062 GTTGACTTAG
* ** ** *
16597072 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACTGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTCAAAAGGACTGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * *
16597137 GCACACAGGGGGATCGGGTCGATCTCTGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCC
66 GCACACAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCACCC
* *
16597202 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCACCA-GTCTAA
131 GCACGCCCATTTCGAGGGTTGGCTTAGGCATACGGAGTTCAT-ACCATGTCTAA
* * **
16597255 GCATACGGAGTTCATTCCCATTCTAAGA-TCAAAAGGAACTGAGGGTTGCGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATTCAAAAGG-ACTGAGGGTTGCAGCAGCAGGATCGAC
* *
16597319 AGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGGCCGACTGAGCAC
65 AGCACACA-GGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCAC
* * * *
16597384 CCGCATGCCCATTTTGAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCGCACGCCCATTTCGAGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAA
16597439 GC
1 GC
16597441 CCCAGCCAAA
Statistics
Matches: 158, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
182 4 0.03
183 59 0.37
184 95 0.60
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTCAAAAGGACTGAGGGTTGCAGCAGCAGGATCGACA
GCACACAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCACCC
GCACGCCCATTTCGAGGGTTGGCTTAGGCATACGGAGTTCATACCATGTCTAA
Found at i:16598115 original size:26 final size:26
Alignment explanation
Indices: 16598086--16598138 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16598076 GTTGGCTTAG
*
16598086 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
16598112 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16598138 G
1 G
16598139 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16598840 original size:26 final size:26
Alignment explanation
Indices: 16598810--16598862 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16598800 GTTGACTTGG
16598810 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16598836 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16598862 G
1 G
16598863 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16599297 original size:157 final size:158
Alignment explanation
Indices: 16598836--16599336 Score: 535
Period size: 159 Copynumber: 3.2 Consensus size: 158
16598826 CCCAGTCTAA
* * *
16598836 GCATACGGAGTTCATTCCCGGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
16598901 GCACGCAGGGGGGACCGGGCCGATCCTCAGATTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAGTGCC
* *
16598966 CGCACGCCCGTTTCGTTGGTTGGA-TTAG
131 CGCACGCTCGTTTCGTGGGTT-GACTTAG
** * ** ** * *
16598994 GCATAGGGAGTTCATT-CCATGTCTATGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
16599058 AGCACGAAGAGGGGAATCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCCAGCCGGCTCAA-T
65 AGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGCCGGCT-AAGT
*
16599122 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
16599153 GCATACATAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAGGGTTGTGGTAGCAGGATCGA-T
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * * **
16599217 GCACGCAGGGGGGACCGGGCCGATCCTTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAGTGCC
* *
16599282 CGCACGCTCGTTTCGTGGCTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGACTTAG
* *
16599310 GCATACGGAATTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
16599337 CATACGTTAA
Statistics
Matches: 278, Mismatches: 58, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
156 4 0.01
157 90 0.32
158 68 0.24
159 111 0.40
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAGTGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16599723 original size:26 final size:26
Alignment explanation
Indices: 16599687--16599738 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16599677 GTAGACTTAG
*
16599687 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16599713 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16599739 AATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16600018 original size:158 final size:158
Alignment explanation
Indices: 16599713--16600213 Score: 525
Period size: 158 Copynumber: 3.2 Consensus size: 158
16599703 CCCAGTCTAA
* ** * * * * *
16599713 GCATACAGAGTTCATTCCCAA-TCTAAAATCGGACCGAACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCAAGTCTAAGCTCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGAC
** * * * * * * * * *
16599777 AGCACGTAGGG-GGACCGGGTTGATCCTCAACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCAC
65 AGCACACAGGGTGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGTCTGAGCGC
16599841 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** *
16599870 GCATAAAGAGTTCATTCCAAGTCTAAGCTC-GAGCCGGACCGAGGGTTGTGGCAGCAGGA-CTGG
1 GCATACGGAGTTCATTCCAAGTCTAAGCTCAGA-CCAAACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * *
16599933 CAGCACGCAGAAGG-GGA-CTGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGTCTCAG
64 CAGCACACAG--GGTGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGTCTGAG
* *
16599996 CGCCCGCACGCTCATTTCGTGGGTTGAG-TTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* * *
16600028 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGCTCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGACA
*
16600093 GCACACAGGGTGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTTGGCC-TGCTGAGCGC
66 GCACACAGGGTGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGT-CTGAGCGC
*
16600157 CTGCACGCTCGTTTCGTGGGTT-GCTTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGC-TTAG
* *
16600186 GCATACGGAGTCCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCAAGTCTAAGC
16600214 ATACGGAGTT
Statistics
Matches: 287, Mismatches: 44, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
156 10 0.03
157 58 0.20
158 210 0.73
159 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGCTCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGACA
GCACACAGGGTGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGTCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16600222 original size:26 final size:26
Alignment explanation
Indices: 16600186--16600238 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16600176 GTTGCTTTAG
16600186 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
*
16600212 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
16600238 G
1 G
16600239 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:16601442 original size:26 final size:26
Alignment explanation
Indices: 16601406--16601458 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16601396 GTTGGCTTAG
* *
16601406 GCATACGGAGTTCGTT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
16601432 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16601458 G
1 G
16601459 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16601960 original size:26 final size:26
Alignment explanation
Indices: 16601931--16601983 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16601921 GTTGGCTTAG
*
16601931 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
16601957 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16601983 G
1 G
16601984 ATCATACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16602163 original size:26 final size:26
Alignment explanation
Indices: 16602127--16602179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16602117 GTTGACTTAG
16602127 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16602153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16602179 G
1 G
16602180 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16602460 original size:158 final size:158
Alignment explanation
Indices: 16602153--16602486 Score: 393
Period size: 158 Copynumber: 2.1 Consensus size: 158
16602143 CCCAGTCTAA
* * * * *
16602153 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCAGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCCAAGATCAAACCAGACCAAGGGTTGCAGCAGCAAGATCGACA
* *** *
16602218 GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTACGCATTGTGCCTCTCCGGTTGGCTCAGCGCC
66 GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTCAGCGCC
* * *
16602283 CGCACGCTCGTTTCGTGGGTTGACTTAT
131 CGCACGCTCATTTCATGGGTTGACTTAG
* * * ** * *
16602311 GCGTACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGAGGGTTGTGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCCAAGATCAAACCAGACCAAGGGTTGCAGCAGCAAGATCGACA
* * * *
16602376 GCACGTAGGGGTGATCGGGCCGATCC-CTGGC-TAGTGCATTCTGCCTCTCCGACCGACTGAGCG
66 GCACGCAGGGGGGATCGGGCCGATCCTC-GGCTTA-CGCATTCTGCCTCTCCGACCGACTCAGCG
* * *
16602439 CCCTCACGTTCATTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGACTTAG
16602469 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16602487 ATGTCTAAGC
Statistics
Matches: 146, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 3 0.02
158 143 0.98
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCCAAGATCAAACCAGACCAAGGGTTGCAGCAGCAAGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTCAGCGCC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:16602499 original size:26 final size:26
Alignment explanation
Indices: 16602469--16602521 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16602459 GTTGGCTTAG
16602469 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16602495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16602521 G
1 G
16602522 ATTTTGAGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16603593 original size:159 final size:156
Alignment explanation
Indices: 16603219--16603860 Score: 464
Period size: 159 Copynumber: 4.1 Consensus size: 156
16603209 CAGTCTAAGA
* * ** *
16603219 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGCCTTACGACAGTAGGATCGACAC
1 ATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTTCGACAGTAGGATCGACAC
* * * * *
16603283 ACGCAGGGGGGACCGAGCCGATCCCCTGCTTGCACATTCTGCCTCTTCAG-CCGGCTGAGCGCCC
65 ACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCACATTATGCCT-TTCCGACCGGCTAAGCGCCC
* * * *
16603347 GTATGGTCGTTTCATGGGTTGGCTTAGGC
128 GCACGCTCATTTCATGGGTTGGCTTAGGC
* * * ** * * ** ** **
16603376 ATAGGGAGTTCATTCCATGTTTAAG-CCCCAGCTGGATCGAGGGTTGT-GGTAGCGGGATCGGTA
1 ATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTT-TCGACAGTAGGATCGACA
** * * *
16603439 GCACGCAGAGAAGGATCGGGCCGATCCCCGGCTAGCACATTATGCCTTTCCGATCGGCTAAGTGC
64 -CACGCAG-GGGGGA-CGGGCCGATCCCCGGCTTGCACATTATGCCTTTCCGACCGGCTAAGCGC
*
16603504 CCGCACGCTCATTTCATGGGTTGACTTAGGC
126 CCGCACGCTCATTTCATGGGTTGGCTTAGGC
* *
16603535 ATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTTCGACAGTAGGATCTACAA
1 ATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTTCGACAGTAGGATCGAC-A
* * * * * * *
16603599 CACACAGGGGGGACTAGGCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGACCAGCTGAA-CGCC
64 CACGCAGGGGGGAC-GGGCCGATCCCCGGCTTGCACATTATGCCTTTCCGACCGGCT-AAGCGCC
* * *
16603663 TGCACGCTCATTTCGTGGGTTGGCTTAGGT
127 CGCACGCTCATTTCATGGGTTGGCTTAGGC
* * * *
16603693 ATACGGAGTTCATTCCATGTCTAAGCAT---A-CGGACCGAGGG--ACCAGCAGCAGGATCGATA
1 ATACGGAGTTCATTCCATGTCTAAG-ATCGGACCGGACCGAGGGTTTCGA-CAGTAGGATCGACA
* * * * * * * * * * * *
16603752 GCTCACAGGGGGGACCGAGCCGATCCTCGACTTACGCATTCT-CCTCTCTGACCGACTGAGCGCC
64 -CACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCACATTATGCCTTTCCGACCGGCTAAGCGCC
* * * *
16603816 CGCACGCTCGTTTCGTGGGTTAGTTTAGGC
127 CGCACGCTCATTTCATGGGTTGGCTTAGGC
16603846 ATACGGAGTTCATTC
1 ATACGGAGTTCATTC
16603861 TATATTTAAG
Statistics
Matches: 382, Mismatches: 85, Indels: 40
0.75 0.17 0.08
Matches are distributed among these distances:
152 1 0.00
153 59 0.15
154 41 0.11
155 11 0.03
156 6 0.02
157 44 0.12
158 100 0.26
159 114 0.30
160 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
ATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTTCGACAGTAGGATCGACACA
CGCAGGGGGGACGGGCCGATCCCCGGCTTGCACATTATGCCTTTCCGACCGGCTAAGCGCCCGCA
CGCTCATTTCATGGGTTGGCTTAGGC
Found at i:16603690 original size:158 final size:153
Alignment explanation
Indices: 16603457--16603860 Score: 390
Period size: 158 Copynumber: 2.6 Consensus size: 153
16603447 AGAAGGATCG
* * * * * * *
16603457 GGCCGATCCCCGGCTAGCACATTATGCCTTTCCGATCGGCT-AAGTGCCCGCACGCTCATTTCAT
1 GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGA-CCGCTGAA-CGCCCGCACGCTCATTTCGT
* **
16603521 GGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGACCGAGGGTTTC-G
64 GGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCAT---A-CAGACCGAGGG-ACCAG
* *
16603583 ACAGTAGGATCTACAACACACAGGGGGGACTA
124 -CAGCAGGATCGACAACACACAGGGGGGAC-A
* *
16603615 GGCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGACCAGCTGAACGCCTGCACGCTCATTTCGTG
1 GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACC-GCTGAACGCCCGCACGCTCATTTCGTG
* *
16603680 GGTTGGCTTAGGTATACGGAGTTCATT-CCATGTCTAAGCATACGGACCGAGGGACCAGCAGCAG
65 GGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCATACAGACCGAGGGACCAGCAGCAG
* * * *
16603744 GATCGATAGCTCACAGGGGGGACC
130 GATCGACAACACACAGGGGGGACA
* * * * * *
16603768 GAGCCGAT-CCTCGACTTACGCATTCT-CCTCTCTGACCGACTGAGCGCCCGCACGCTCGTTTCG
1 G-GCCGATCCCT-GGCTTGCGCATTATGCCTCTCCGACCG-CTGAACGCCCGCACGCTCATTTCG
* *
16603831 TGGGTTAGTTTAGGCATACGGAGTTCATTC
63 TGGGTTGGCTTAGGCATACGGAGTTCATTC
16603861 TATATTTAAG
Statistics
Matches: 207, Mismatches: 30, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
152 1 0.00
153 61 0.29
154 42 0.20
155 11 0.05
156 1 0.00
157 4 0.02
158 83 0.40
159 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (153 bp):
GGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGCTGAACGCCCGCACGCTCATTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCATACAGACCGAGGGACCAGCAGCAGG
ATCGACAACACACAGGGGGGACA
Found at i:16604372 original size:26 final size:26
Alignment explanation
Indices: 16604335--16604387 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16604325 GTTGGCTTAG
16604335 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATATGAAGTTCATTCCCA-GTCTAA
*
16604361 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
16604387 G
1 G
16604388 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:16604581 original size:26 final size:26
Alignment explanation
Indices: 16604544--16604596 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16604534 GTTGACTTAG
16604544 GCATACAGAGTTCA-TCCCGAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16604570 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16604596 G
1 G
16604597 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16604746 original size:26 final size:26
Alignment explanation
Indices: 16604710--16604760 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16604700 TGGCTTAGGG
* *
16604710 ATACGGAGTTCATTCCCTA-TCTAAGC
1 ATACGAAGTTCACTCCC-AGTCTAAGC
16604736 ATACGAAGTTCACTCCCAGTCTAAG
1 ATACGAAGTTCACTCCCAGTCTAAG
16604761 AGTTTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCACTCCCAGTCTAAGC
Found at i:16606050 original size:26 final size:26
Alignment explanation
Indices: 16605999--16606051 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16605989 GTTGGCTTAG
* *
16605999 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGCCTAA
16606025 GCATACGAAGTTCATTCCCA-GCCTAA
1 GCATACGAAGTTCATT-CCATGCCTAA
16606051 G
1 G
16606052 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGCCTAA
Found at i:16606234 original size:195 final size:194
Alignment explanation
Indices: 16605896--16606265 Score: 505
Period size: 195 Copynumber: 1.9 Consensus size: 194
16605886 GTTGCGGCAG
* * * * * **
16605896 CAGGATCGACAGCACGCAGGGGTGATCGGGCCGGTCCCGACTTGTGCATTTTTCCTCTTCGGTCG
1 CAGGATCGACAGCACGCAGGGGTGACCGGGCCGATCCCGACTTGCGCATTCTTCCTCTCCGACCG
* * *
16605961 ACTGAGCACCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 ACTGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAG
*
16606026 CATACGAAGTTCATTCCCAGCCTAAGATCAGA-CTGGACTGAGGGTTGTGGTAGTAGGACCAGCA
131 CATACGAAGTTCATT-CCAGCCTAAGATCAGATC-AGACTGAGGGTTGTGGTAGTAGGACCAGCA
16606090 A
194 A
* * *
16606091 CAGGATCGACAGCACGTAGGGG-GACCGGGCCGATCCCCGACTTGCGTATTCTTCCTGTCCGACC
1 CAGGATCGACAGCACGCAGGGGTGACCGGGCCGAT-CCCGACTTGCGCATTCTTCCTCTCCGACC
* * *
16606155 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTA
65 GACTGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTA
*
16606219 AGCATAC-AGAGTTCATTCCAGTCTAAGATCAGATCAGACTGAGGGTT
129 AGCATACGA-AGTTCATTCCAGCCTAAGATCAGATCAGACTGAGGGTT
16606266 ACGGCAGCAG
Statistics
Matches: 153, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
194 37 0.24
195 113 0.74
196 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (194 bp):
CAGGATCGACAGCACGCAGGGGTGACCGGGCCGATCCCGACTTGCGCATTCTTCCTCTCCGACCG
ACTGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAG
CATACGAAGTTCATTCCAGCCTAAGATCAGATCAGACTGAGGGTTGTGGTAGTAGGACCAGCAA
Found at i:16606245 original size:25 final size:26
Alignment explanation
Indices: 16606194--16606245 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16606184 GTTGACTTAG
16606194 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16606220 GCATACAGAGTTCAT-TCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16606245 G
1 G
16606246 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16607056 original size:26 final size:26
Alignment explanation
Indices: 16607002--16607059 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
16606992 TTCTTTCTAA
* **
16607002 AAAAAATTTAAAAAATCCTGAAACGT
1 AAAAAATTTAAAAAATCATGAAAAAT
* *
16607028 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAATTTAAAAAATCATGAAAAAT
16607054 AAAAAA
1 AAAAAA
16607060 CGGGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.64, C:0.09, G:0.07, T:0.21
Consensus pattern (26 bp):
AAAAAATTTAAAAAATCATGAAAAAT
Found at i:16607289 original size:26 final size:26
Alignment explanation
Indices: 16607259--16607311 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16607249 GTTGACTTAG
16607259 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** * *
16607285 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16607311 G
1 G
16607312 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16607624 original size:159 final size:156
Alignment explanation
Indices: 16607285--16607624 Score: 373
Period size: 159 Copynumber: 2.2 Consensus size: 156
16607275 CCCAGTCTAA
* * * *
16607285 GCATATGGAGTTCATTCTCAGTCTAAGATCAGACCGAATTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAATTGAGGGTTGCGGCAGCAGGACCGACA
* * * * *
16607350 GCATGTAGGGGACCAGGCCGATCCCTAGCTTGCACATTCTGCCTCTCCGATCGGCTGAACGCCCG
66 GCACGTAGGGGACCAGGCCGATCCCCAACTTGCACATTATGCCTCTCCGATCGGCTCAACGCCCG
* *
16607415 CACACCCTTTTCATGGGTTGGCTTAG
131 CACACCATTTTCATGGGTTGACTTAG
* *
16607441 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGAATTGAGGGTTGTGGCAGCAGGACCTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACC-AGACCGAATTGAGGGTTGCGGCAGCAGGACC-G
*** ** ** * *
16607504 -CAGCACGTAGAGGGGGATTGGGTTGATCCCCAACTTGTGCATTATGCCTCTCTGATTGGCTCAA
63 ACAGCACGT--A-GGGGACCAGGCCGATCCCCAACTTGCACATTATGCCTCTCCGATCGGCTCAA
* *
16607568 CGCCCGTACGCTCATTTT-ATGGGTTGACTTAG
125 CGCCCGCACAC-CATTTTCATGGGTTGACTTAG
16607600 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16607625 TGATTGGACC
Statistics
Matches: 152, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
155 2 0.01
156 56 0.37
157 3 0.02
158 1 0.01
159 82 0.54
160 8 0.05
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAATTGAGGGTTGCGGCAGCAGGACCGACA
GCACGTAGGGGACCAGGCCGATCCCCAACTTGCACATTATGCCTCTCCGATCGGCTCAACGCCCG
CACACCATTTTCATGGGTTGACTTAG
Found at i:16607793 original size:26 final size:26
Alignment explanation
Indices: 16607757--16607809 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16607747 GTTGGCTTAG
*
16607757 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
16607783 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16607809 G
1 G
16607810 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16608651 original size:26 final size:26
Alignment explanation
Indices: 16608622--16608677 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
16608612 AGGGTTGGCT
16608622 TAAGCATAT-AGAGTTCATT-CCATGTC
1 TAAGCAT-TCAGAGTTCATTCCCA-GTC
16608648 TAAGCATTCAGAGTTCATTCCCAGTC
1 TAAGCATTCAGAGTTCATTCCCAGTC
16608674 TAAG
1 TAAG
16608678 ATTGGATCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 1 0.04
26 24 0.86
27 3 0.11
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (26 bp):
TAAGCATTCAGAGTTCATTCCCAGTC
Found at i:16609007 original size:26 final size:26
Alignment explanation
Indices: 16608978--16609030 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16608968 GTTAGCTTAG
*
16608978 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16609004 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16609030 G
1 G
16609031 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16609220 original size:354 final size:354
Alignment explanation
Indices: 16608385--16609241 Score: 843
Period size: 353 Copynumber: 2.4 Consensus size: 354
16608375 CATGCAGAGA
* * * * * ** ** *
16608385 GGGACCGACCCGATCCTCGAGTTACGCATTATGCCT-TCCGGTCGACTCAGTGCCCGAACGCTTG
1 GGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGACTCAGCACCCGAACGCTTA
* *
16608449 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGAAC-GAGGGTT
66 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * * * * * * * **
16608513 GTGGTAGTAGGATCAACAGCACGCAGTGGGGGATCGGGATGGTCCCCGGCTTGTGCATTCTACCT
131 GTGATAGCAGGATCGACAGCACACAGTGGGGGACCAGGATGATCCCCGACTTGCACATTCTACCT
* * * *
16608578 CTTCGACCAGCTGAGTGCCCCCACACTCCTTTCAAGGGTTGGCTTAAGCATATAGAGTTCATTCC
196 CTCCGACCAGCTGAGTGCCCCCACACTCATTTCAAGGGTTAGCTTAAGCATACAGAGTTCATTCC
* ** * ** * * *
16608643 ATGTCTAAGCATTCAGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGATGGTTGCGGTAGCAG
261 ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAG
* ** *
16608708 AACCAGCAGTAGGATCGGTAGCACGTAGG
326 AACCAACAGTAGGATCGACAGCACGCAGG
* * * * * ** ** * *
16608737 GGGACCGAGCTGATCCTCGACTTGCGCATTATGCCTTTCTGACCGGTTCAGCACCCGTGCACTCA
1 GGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGACTCAGCACCCGAACGCTTA
* * *
16608802 TTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AAATCGAGGGT
66 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGGT
* * * *
16608866 TGCGATAGCAGGATCGACAGCACATAG-GGGGGACCAGG-TCGATCCTCGACTTGCACATTCTGC
130 TGTGATAGCAGGATCGACAGCACACAGTGGGGGACCAGGAT-GATCCCCGACTTGCACATTCTAC
** * ** ** * *
16608929 CTCTCCGGTC-GACTGAGTGCCCGCATGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCAT
194 CTCTCCGACCAG-CTGAGTGCCCCCACACTCATTTCAAGGGTTAGCTTAAGCATACAGAGTTCAT
*
16608993 TCCATGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATA
258 TCCATGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATA
* * * *
16609057 GTAGGACCAACAGTAGGATCGACAGTATGCAGGG
322 GCAGAACCAACAGTAGGATCGACAGCACGCA-GG
* * * *
16609091 GGGACC-AGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTT
1 GGGACCGA-GCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGACTCAGCACCCGAACGCTT
* **
16609155 ATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCTA-ACCGAACTGAGG
65 ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATC-AGACCGAACTGAGG
* * *
16609218 GTTATGATAGCAGGACCGATAGCA
128 GTTGTGATAGCAGGATCGACAGCA
16609242 GGATCGACAA
Statistics
Matches: 404, Mismatches: 90, Indels: 20
0.79 0.18 0.04
Matches are distributed among these distances:
352 37 0.09
353 219 0.54
354 144 0.36
355 4 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (354 bp):
GGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGACTCAGCACCCGAACGCTTA
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
GTGATAGCAGGATCGACAGCACACAGTGGGGGACCAGGATGATCCCCGACTTGCACATTCTACCT
CTCCGACCAGCTGAGTGCCCCCACACTCATTTCAAGGGTTAGCTTAAGCATACAGAGTTCATTCC
ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGATAGCAG
AACCAACAGTAGGATCGACAGCACGCAGG
Found at i:16609312 original size:13 final size:13
Alignment explanation
Indices: 16609294--16609321 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
16609284 TGTGCATTAT
16609294 GCCTCTCCGATCG
1 GCCTCTCCGATCG
16609307 GCCTCTCCGATCG
1 GCCTCTCCGATCG
16609320 GC
1 GC
16609322 TAAATGCTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:16609406 original size:26 final size:26
Alignment explanation
Indices: 16609357--16609406 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16609347 GTTGACTTAG
*
16609357 GCATACGGAGTTCATCCCTGGTCTGA
1 GCATACGGAGTTCATCCCTAGTCTGA
16609383 GCATACGGAGTTCATTCCC-AGTCT
1 GCATACGGAGTTCA-TCCCTAGTCT
16609407 AAGATCCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTGA
Found at i:16614583 original size:196 final size:196
Alignment explanation
Indices: 16614249--16614608 Score: 542
Period size: 196 Copynumber: 1.8 Consensus size: 196
16614239 CTGAGGGTTG
* * * * *
16614249 CAGCAGCAAGATCGACAGCACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGCTCATTCTACCTCT
1 CAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACTCATTCTACCTCT
* * * *
16614314 CCGACCGGTTGAGCACCCTCACGCTCATTTCGCAGGTTGGCTTAGGCATATAGAGTTCATTCCAT
66 CCGACCGGTTGAGCACCCGCACGCCCATTTCGCAGGTTGGCTTAGGCACACAGAGTTCATTCCAT
*
16614379 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCAAGGGTTGCGGTAGCAGGA
131 GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGATCAAGGGTTGCGGTAGCAGGA
16614444 C
196 C
* * * *
16614445 CAGCAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCTCGGCTTACGT-ATTCTGCCTC
1 CAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTAC-TCATTCTACCTC
* **
16614509 TCCGACCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCACACAGAGTTCATTCCA
65 TCCGACCGGTTGAGCACCCGCACGCCCATTTCGCAGGTTGGCTTAGGCACACAGAGTTCATTCCA
*
16614574 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
130 TGTCTAAGCATACAGAGTTCATTCCCAATCTAAGA
16614609 GTTTGAGCCA
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
196 144 0.99
197 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.23
Consensus pattern (196 bp):
CAGCAGCAAGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACTCATTCTACCTCT
CCGACCGGTTGAGCACCCGCACGCCCATTTCGCAGGTTGGCTTAGGCACACAGAGTTCATTCCAT
GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGGATCAAGGGTTGCGGTAGCAGGA
C
Found at i:16615074 original size:26 final size:26
Alignment explanation
Indices: 16615044--16615096 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16615034 GTTAGCTTAG
16615044 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16615070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16615096 G
1 G
16615097 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16616258 original size:158 final size:158
Alignment explanation
Indices: 16615800--16616304 Score: 504
Period size: 158 Copynumber: 3.2 Consensus size: 158
16615790 ATCCCCAGTC
* * * *
16615800 TAGGCATGCGAAGTTCATT-C-TCGATCTAAGATTGGATCAGACCGAGGGTAGCGGCAGCAGGAT
1 TAGGCATACGAAGTTCATTCCAT-G-TCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
16615863 CGGCAGCACG-TAGGGGGGATCGGGCTGATCCCCGGTTTGCGCATTCTGCCTCTCCGACCGATTG
64 CGGAAGCACGCAAAGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTG
* * * *
16615927 AGCGCCCGCATGCCCATTTCGTGGGTTGGCT
128 AGTGCCCGCACGCTCATTTCATGGGTTGGCT
* * * * ** * * * *
16615958 AAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCCGAACTGAGGGTTGTGGCAGC-GAGAT
1 TAGGCATACGAAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAG-GAT
* * * * * * * * *
16616021 CGGTAGGACGCAGAGGGGGACCTGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTC
64 CGGAAGCACGCAAAGGGGGACC-GGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTG
* *
16616086 AGTGCCCGCACGCTCATTTAATGGGTTGACT
128 AGTGCCCGCACGCTCATTTCATGGGTTGGCT
*
16616117 TAGGCATACGAAGTTCATTCC-TAGTCTAAGATCGGATCGGACCGATGGTTGCGGCAGCAGGATC
1 TAGGCATACGAAGTTCATTCCAT-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATC
* *
16616181 -GAAGCACGCAAAGGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCC-AGCCGACTG
65 GGAAGCACGCAAAGGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGACTG
*
16616244 AGTGCCCGCACGCTCGTTTCATGGGTTGGCT
128 AGTGCCCGCACGCTCATTTCATGGGTTGGCT
* *
16616275 TAGCCATACGGAGTTCATTCCATGTCTAAG
1 TAGGCATACGAAGTTCATTCCATGTCTAAG
16616305 GATACGGAGT
Statistics
Matches: 274, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 150 0.55
159 112 0.41
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
TAGGCATACGAAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCG
GAAGCACGCAAAGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGT
GCCCGCACGCTCATTTCATGGGTTGGCT
Found at i:16616310 original size:26 final size:27
Alignment explanation
Indices: 16616280--16616331 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
16616270 TGGCTTAGCC
16616280 ATACGGAGTT-CATT-CCATGTCTAAGG
1 ATACGGAGTTCCATTCCCA-GTCTAAGG
16616306 ATACGGAGTTCCATTCCCAGTCTAAG
1 ATACGGAGTTCCATTCCCAGTCTAAG
16616332 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 10 0.42
27 11 0.46
28 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (27 bp):
ATACGGAGTTCCATTCCCAGTCTAAGG
Found at i:16617172 original size:159 final size:156
Alignment explanation
Indices: 16616671--16617173 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 156
16616661 CCCAGTCTAA
* *
16616671 GCATATGGAGTTCATT-CGTAGTCTAAGATCGACCGGACCGAGGGTTGTGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGACCGGACCGAGGGTTGTGACAGTAGGATCGACA
* * * *
16616735 TCACGCATGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCTCC
65 GCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCCCC
* *
16616800 TGCACGCTCGTTTTCGCGGGTTGGCTTAG
130 T-CACGCTC-ATTTCGTGGGTTGGCTTAG
* * * * ** * ** * * * *
16616829 GCATAGGGAGTTCGTTTCATGTTTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGTGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGA-CCGGACCGAGGGTTGTGACAGTAGGATCGACA
* * * * * * *
16616894 GCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGG-CTGGCTCAGGG
65 GCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GGCT-AAGC
** * * * *
16616958 CCCAAACGCTCGTTTCGTTGGTCGACTTAG
127 CCCTCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
16616988 GCATACGGAGTTCATTCCCA-ATCTAAGATGGGATCGGACCGAGGGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGAT-CGACCGGACCGAGGGTTGTGACAGTAGGATCGAC
* * * * *
16617052 AGCACGCAAGGGGGGATCGGGCCGGTCCCCAGCTTGCACATTCCGCCTCTCCGGTCGGTTGAGCA
64 AGCACGC-AGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC-
16617117 CCCTCACGCTCATTTCGTGGGTTGGCTTAG
127 CCCTCACGCTCATTTCGTGGGTTGGCTTAG
*
16617147 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16617174 TATACGGAGT
Statistics
Matches: 263, Mismatches: 71, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
158 26 0.10
159 179 0.68
160 54 0.21
161 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGACCGGACCGAGGGTTGTGACAGTAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCCCCT
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16618601 original size:26 final size:26
Alignment explanation
Indices: 16618565--16618617 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16618555 GTTGACTTAG
16618565 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16618591 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16618617 G
1 G
16618618 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16618938 original size:26 final size:26
Alignment explanation
Indices: 16618908--16618960 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16618898 GTTGGCTTAG
16618908 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
16618934 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16618960 G
1 G
16618961 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16619078 original size:195 final size:193
Alignment explanation
Indices: 16618823--16619496 Score: 593
Period size: 195 Copynumber: 3.6 Consensus size: 193
16618813 AGGACGCAGA
* * * *
16618823 GGGGGACTGGGTCGATCCCTAGCTTGCGCATTTTACCTCTCCG-GCTGGCTGAGCGCCCGCACGC
1 GGGGGACT-GGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGCGCCCGCACGC
*
16618887 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCC
64 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA-GGAGTTCATTCC
*
16618952 TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCATGC
128 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCATGC
16619017 G
193 G
* *
16619018 GGGGGACCTGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
1 GGGGGA-CTGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
* * ** ** * *
16619083 CATTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGCCTAAGCCCCAGCCG--GA--CCG
65 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CATAGGAGTTCATTCCC
** * * * * *
16619144 AGGGT-TGTGGTAGCAGGACCGGCAACGA-GATT--GGTAGCACG--CAG-A--AGG---G---G
129 A--GTCT-AAG-ATCA-GACCAG-ACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAG
16619194 -AT-C-
188 CATGCG
* ** * * * *
16619197 --GGG-C---T-GATCCCTGGCTTGCATATTATGCCTCTCCGGTCGACTGAGCACCCACACGCTC
1 GGGGGACTGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTC
* *
16619255 ATTTCGTGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
66 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA-GGAGTTCATTCCCA
* * * *
16619320 ATCTAAGTTC-GACCAAACCGAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGACAGCATGCAG
130 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCATGC-G
* * * ** *
16619384 GAGGGACCTGGCCGATCCCTGGCTTATGCATTCTGCCTTTCCGATC-AGCTGAGCGCCCGCACGC
1 GGGGGA-CTGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGA-CTGAGCGCCCGCACGC
* *
16619448 TCATTTCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGC
64 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16619497 CCCAGCCGGA
Statistics
Matches: 373, Mismatches: 64, Indels: 84
0.72 0.12 0.16
Matches are distributed among these distances:
169 4 0.01
170 9 0.02
171 88 0.24
172 9 0.02
173 3 0.01
174 4 0.01
175 5 0.01
177 6 0.02
180 2 0.01
181 2 0.01
182 1 0.00
183 1 0.00
184 2 0.01
185 2 0.01
188 3 0.01
189 3 0.01
190 1 0.00
191 7 0.02
192 1 0.00
193 12 0.03
194 4 0.01
195 195 0.52
196 9 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (193 bp):
GGGGGACTGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTC
ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCATGCG
Found at i:16619324 original size:26 final size:26
Alignment explanation
Indices: 16619274--16619326 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16619264 GTTGGCTTAG
* *
16619274 GCATACGGATTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16619300 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16619326 G
1 G
16619327 TTCGACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16619392 original size:366 final size:364
Alignment explanation
Indices: 16618493--16619694 Score: 1456
Period size: 366 Copynumber: 3.3 Consensus size: 364
16618483 CCATCCGTTC
* *** * ** *
16618493 GATCCCTGGCTTGGGCACCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
* * * *
16618558 GACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCG
66 GGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
16618622 GACCGGACCGAGGG-T---T-GC--GA-CAGT---AGGATCGGCAGCACGCAGGGGGGA--TCGT
130 GACCAGACCGAGGGTTGCGTAGCAGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGACCTGGT
* * * * * *
16618674 ACCGATCCCCGGTTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGG
195 --CGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGG
** ** * *
16618739 GTTGGCTAAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTG--GCA
258 GTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGTAGCA
*
16618802 -G--C-G---G-GATCGGCAGGACGCAGAGGGGGA-CTGGG-T
323 GGACCGGCACGAGATCGGCAGCACGCAGAGGGGGATC-GGGCT
* * * * * *
16618835 CGATCCCTAGCTTGCGCATTTTACCTCTCCGG-CTGGCTGAGCGCCCGCACGCTCGTTTCATGGG
1 -GATCCCTGGCTTGCGCATTATGCCTCTCCGGTC-GGCTGAGCACCCGCACGCTCATTTCGTGGG
* *
16618899 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATC
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
16618964 AGACCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACAGCATGC-GGGGGGACCTG
129 AGACCAGACCGAGGGTTGC-GTAGCAGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGACCTG
** *
16619028 GTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGG
193 GTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGG
*
16619093 GTTGGCTTTGGCATACGGAGTTCATTCCATGCCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGC
258 GTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT-GTAGC
* * *
16619158 AGGACCGGCAACGAGATTGGTAGCACGCAGAAGGGGATCGGGCT
322 AGGACCGGC-ACGAGATCGGCAGCACGCAGAGGGGGATCGGGCT
** * *
16619202 GATCCCTGGCTTGCATATTATGCCTCTCCGGTCGACTGAGCACCCACACGCTCATTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
* * *
16619267 GGCTTAGGCATACGGATTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGTTC-G
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
16619331 ACCAAACCGAGGGTTGCGATAGCAGGACCAGTAGCAGGATCGACAGCATGCAGGAGGGACCTGGC
131 ACCAGACCGAGGGTTGCG-TAGCAGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGACCTGGT
* * * *
16619396 CGATCCCTGGCTTATGCATTCTGCCTTTCCGATC-AGCTGAGCGCCCGCACGCTCATTTCGTGGG
195 CGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGA-CTGAGCGCCCGCACGCTCATTTCATGGG
16619460 TTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTCGTAGCA
259 TTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT-GTAGCA
* * * **
16619525 GGACTGACAGCGAGATCAGCAGCAAACAGAGGGGGATCGGGCT
323 GGACCGGCA-CGAGATCGGCAGCACGCAGAGGGGGATCGGGCT
* * ** *
16619568 GATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGTTGAGCACCCGCACGCTCATTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
*
16619633 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
16619695 TTTGAGCCAT
Statistics
Matches: 737, Mismatches: 87, Indels: 47
0.85 0.10 0.05
Matches are distributed among these distances:
342 4 0.01
343 121 0.16
344 1 0.00
348 1 0.00
349 2 0.00
351 2 0.00
352 4 0.01
354 113 0.15
355 15 0.02
356 3 0.00
357 3 0.00
358 1 0.00
360 1 0.00
361 1 0.00
364 1 0.00
365 52 0.07
366 409 0.55
367 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (364 bp):
GATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGGTTGCGTAGCAGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGACCTGGTC
GATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGGGTT
GGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGTAGCAGGA
CCGGCACGAGATCGGCAGCACGCAGAGGGGGATCGGGCT
Found at i:16619676 original size:26 final size:26
Alignment explanation
Indices: 16619640--16619692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16619630 GTTGGCTTAG
16619640 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16619666 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16619692 G
1 G
16619693 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16620444 original size:158 final size:159
Alignment explanation
Indices: 16620081--16620493 Score: 528
Period size: 159 Copynumber: 2.6 Consensus size: 159
16620071 ATTTTAAAAA
* * ** * * *
16620081 ATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCTTACGCCCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * **
16620146 GCTTAGGCATAGGGAGTTCAGTCCATCTCTAAGCCCCATCCGGACCGAGGGTTGTGGTAGCAGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCATCCGGACCGAGGGTTGCAGTAGCAGGA
*
16620211 CCCGCAACACATAGAGGGGGACTGAGTCG
131 CCCGCAACACACAGAGGGGGACTGAGTCG
* * * * *
16620240 ATCCCTGGTTTGCGTATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * **
16620305 ACTTATGCATACGGAGTTCATTCCAAGTCTAAGATCGGAT-CGGACCGAGGGTTGCAGTAGCAGG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCCATCCGGACCGAGGGTTGCAGTAGCAGG
* *
16620369 A-TCGACAGCACACAG-GGGGGA-TCGAGTCG
130 ACCCG-CAACACACAGAGGGGGACT-GAGTCG
16620398 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
*
16620463 GCTTAGGCAGACGGAGTTCATTCCATGTCTA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTA
16620494 GGCATACGGA
Statistics
Matches: 216, Mismatches: 35, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
157 1 0.00
158 101 0.47
159 111 0.51
160 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCATCCGGACCGAGGGTTGCAGTAGCAGGA
CCCGCAACACACAGAGGGGGACTGAGTCG
Found at i:16621219 original size:161 final size:159
Alignment explanation
Indices: 16620925--16621219 Score: 380
Period size: 161 Copynumber: 1.8 Consensus size: 159
16620915 GTGTTGCGGT
* * *
16620925 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGA
* * * * * ** * **
16620990 TCGGCTGAGCGCCCGCACATCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCT
66 CCGACTGAGCGCCCGCACATCCATTTCGTAGATTGGCTTAGGCATACAGAGTTCATTCCACATCT
16621055 AAGCCCCTAGTTAGACCGAGGGTTGTGGC
131 AAGCCCCTAGTTAGACCGAGGGTTGTGGC
* *
16621084 AGCAGGGATCGACAGCACGTAGAGGGGGATCGGGCCGATCC-CCGTCTTGCGCATTATGCCTCTC
1 AGCA-GGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCTCAG-CTTGCGCATTATGCCTCTC
*
16621148 CGACCGACTGAGCGTCCC-CACA-CTCATTTCGTAGATTGGCTTAGGCATACAGAGTTCATTTCA
63 CGACCGACTGAGCG-CCCGCACATC-CATTTCGTAGATTGGCTTAGGCATACAGAGTTCATTCCA
16621211 CATCTAAGC
126 CATCTAAGC
16621220 ATGCGGAGTT
Statistics
Matches: 115, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
159 4 0.03
160 19 0.17
161 89 0.77
162 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTGCGCATTATGCCTCTCCGA
CCGACTGAGCGCCCGCACATCCATTTCGTAGATTGGCTTAGGCATACAGAGTTCATTCCACATCT
AAGCCCCTAGTTAGACCGAGGGTTGTGGC
Found at i:16622140 original size:158 final size:155
Alignment explanation
Indices: 16621842--16622418 Score: 516
Period size: 158 Copynumber: 3.6 Consensus size: 155
16621832 ACCACCCATT
* * ** * * * * *
16621842 CGATCCCCGGCTTGCACAACCTGCCTCTCTGGTCGACTGAGCACCCGAACGCTCATTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTACCCGCACGCTCGTTT-GTGGGT
* * ** **
16621907 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG-ATCAAACCAGATTGAGGGTTGTGGCAGCA
65 TGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCA-CCAGTCAGACCGAGGGTTGTGGCAGCA
16621971 GGATCGATAGCACACAGGGGAGACCGGGC
128 GGATCGATAGCACACAGGGG-GACCGGGC
** * * * * *
16622000 CGATCCCCGACTTATGCATTCTACCTCTCTGGTCGGCTGAGTGCCCGTACGCCCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTACCCGCACGCTCGTTT-GTGGGT
* * ** *
16622065 TGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGC-G
65 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCACCAGTCAGACCGAGGGTTGTGGCAGCAG
* * *
16622129 GCACCTG-TAGCATGCAAAGGGGGACCGGGT
129 G-ATC-GATAGCA--CACAGGGGGACCGGGC
* * * * *
16622159 CGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCA-TCACCCGCACTCTCGTTTGATTGG
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGT-ACCCGCACGCTCGTTTG-TGGG
* * * *
16622223 TTGAATTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGC
64 TTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCAG-TCAGACCGAGGGTTGTGGCAGC
* * * *
16622287 AGGATCGACAGCACGCAGGGGGGACCCGAC
127 AGGATCGATAGCACACA-GGGGGACCGGGC
** * * **
16622317 CGATCTTCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGGGCCCGCACGCTCGATTTGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTACCCGCACGCTCG-TTTGTGGGT
*
16622382 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCA
16622419 TATAGAGTTC
Statistics
Matches: 333, Mismatches: 69, Indels: 33
0.77 0.16 0.08
Matches are distributed among these distances:
157 8 0.02
158 199 0.60
159 116 0.35
160 10 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTACCCGCACGCTCGTTTGTGGGTT
GACTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAGTCAGACCGAGGGTTGTGGCAGCAGGA
TCGATAGCACACAGGGGGACCGGGC
Found at i:16622416 original size:317 final size:317
Alignment explanation
Indices: 16621841--16622417 Score: 771
Period size: 317 Copynumber: 1.8 Consensus size: 317
16621831 TACCACCCAT
* * *
16621841 TCGATCCCCGGCTTGCACAACCTGCCTCTCTGGTCGACTGAGCACCCGAACGCTCATTTCGTGGG
1 TCGATCCCCGGCTTGCACAACATGCCTCTCCGGTCGACTCAGCACCCGAACGCTCATTTCGTGGG
* * **
16621906 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAAACCAGATTGAGGGTTGTGGCAGCA
66 TTGAATTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCA
* * * * * *
16621971 GGATCGATAGCACACAGGGGAGACCGGGCCGATCCCCGACTTATGCATTCTACCTCTCTGGTCGG
131 GGATCGACAGCACACAGGGGAGACCCGACCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGG
* * *
16622036 CTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGC
196 CTGAGGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTAAATGTCTAAGC
16622101 CCCAGTCAGACCGAGGGTTGTGGCAGCGGCACCTGTAGCATGCAAAGGGGGACCGGG
261 CCCAGTCAGACCGAGGGTTGTGGCAGCGGCACCTGTAGCATGCAAAGGGGGACCGGG
* ** * * * * * *
16622158 TCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCATCACCCGCACTCTCGTTT-GATTG
1 TCGATCCCCGGCTTGCACAACATGCCTCTCCGGTCGACTCAGCACCCGAACGCTCATTTCG-TGG
* * * *
16622222 GTTGAATTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGC
65 GTTGAATTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGC
* * ** * *
16622287 AGGATCGACAGCACGCAGGGGGGACCCGACCGATCTTCGACTTGCGCATTCTGCCTCTCCGGCCG
130 AGGATCGACAGCACACAGGGGAGACCCGACCGATCCCCGACTTACGCATTCTACCTCTCCGGCCG
* * **
16622352 GTTGAGGGCCCGCACGCTCGATTT-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
195 GCTGAGGGCCCGCACGCCCG-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTAAATGTCTAA
16622416 GC
259 GC
16622418 ATATAGAGTT
Statistics
Matches: 219, Mismatches: 39, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
316 1 0.00
317 215 0.98
318 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (317 bp):
TCGATCCCCGGCTTGCACAACATGCCTCTCCGGTCGACTCAGCACCCGAACGCTCATTTCGTGGG
TTGAATTAGGCATACAGAGTTCATCCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCA
GGATCGACAGCACACAGGGGAGACCCGACCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGG
CTGAGGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTAAATGTCTAAGC
CCCAGTCAGACCGAGGGTTGTGGCAGCGGCACCTGTAGCATGCAAAGGGGGACCGGG
Found at i:16623237 original size:158 final size:156
Alignment explanation
Indices: 16622778--16623272 Score: 503
Period size: 159 Copynumber: 3.1 Consensus size: 156
16622768 TAAGCATATG
* * *
16622778 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGAGCAGGATCGACAGCACGCAA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGCAGCAGGATCGATAGCACGCAG
* * * * *
16622843 GGGGGATCGGGCTAAT-CCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTTAGCGCCCGCACGC
66 GGGGGACCGGGCTGATCCCT-GGCTTGCGCATTCTGCCTCTTCGGTC-GATTAGCGCCCGCACGC
* * * *
16622907 CCGTTTTGTGGGTTGGCTTAGGCATTGG
129 TCGTTTCGTGGGTTGGCTTAGGCATAGA
* * ** * * * * ** * * * *
16622935 GAGTTCGTTCCAAGTCTAAGCCCCAGCCAAACCAAGGGTTGTGGTAGCGGGACCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT-ACGCAGCAGGATCGATAGCACGCA
* * * * * *
16623000 GAGGGGGACCGGG-TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCATCGCCCTCAC
65 G-GGGGGACCGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTTCGGTC-GATTAGCGCCCGCAC
* * * *
16623064 TCTCATTTCGCGGGTTGACTTAGGCATAGA
127 GCTCGTTTCGTGGGTTGGCTTAGGCATAGA
* *
16623094 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGATAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACG-CAGCAGGATCGATAGCACGCA
*
16623159 GGGGGGACCGGGCTGATCCCTGGCTTGCACATTCTGCCTCTTCGGTCGATTGAGCGCCCGCACGC
65 GGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGATT-AGCGCCCGCACGC
* *
16623224 TTGTTTCATGGGTTGGCTTAGGCATACGA
129 TCGTTTCGTGGGTTGGCTTAGGCATA-GA
16623253 -AGTTCATT-CCATGTCTAAGA
1 GAGTTCATTCCCA-GTCTAAGA
16623273 ATATGGAGTT
Statistics
Matches: 267, Mismatches: 62, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 37 0.14
158 107 0.40
159 121 0.45
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGCAGCAGGATCGATAGCACGCAG
GGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGATTAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATAGA
Found at i:16623283 original size:26 final size:26
Alignment explanation
Indices: 16623247--16623324 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
16623237 TGGCTTAGGC
*
16623247 ATACGAAGTTCATTCCATGTCTAAGA
1 ATACGGAGTTCATTCCATGTCTAAGA
*
16623273 ATATGGAGTTCATTCCATGTCTAAGA
1 ATACGGAGTTCATTCCATGTCTAAGA
16623299 ATACGGAGTTCATTCCCA-GTCTAAGA
1 ATACGGAGTTCATT-CCATGTCTAAGA
16623325 TCAGATCGGA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGA
Found at i:16623680 original size:26 final size:26
Alignment explanation
Indices: 16623651--16623703 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16623641 GTTGACTTAG
*
16623651 GCATACGGAGATCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
* *
16623677 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
16623703 G
1 G
16623704 ATCGAATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:16624865 original size:26 final size:26
Alignment explanation
Indices: 16624829--16624881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16624819 GTTGACTTAG
16624829 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
* *
16624855 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
16624881 G
1 G
16624882 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCCAGTCTAA
Found at i:16625360 original size:26 final size:26
Alignment explanation
Indices: 16625330--16625390 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
16625320 GTTGGCTTAG
16625330 GCATATTGAGTTCATT-CCATGTCTAA
1 GCATATTGAGTTCATTCCCA-GTCTAA
**
16625356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATTGAGTTCATTCCCAGTCTAA
*
16625382 G-ATTTTGAG
1 GCATATTGAG
16625391 CCACGGTGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 5 0.17
26 21 0.72
27 3 0.10
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (26 bp):
GCATATTGAGTTCATTCCCAGTCTAA
Found at i:16626107 original size:26 final size:26
Alignment explanation
Indices: 16626057--16626109 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16626047 GTTGACTTAG
* *
16626057 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
**
16626083 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16626109 G
1 G
16626110 ATTGGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16626568 original size:158 final size:157
Alignment explanation
Indices: 16626083--16626584 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 157
16626073 CCCAGTCTAA
* ** * *
16626083 GCATACGGAGTTCATTTCCA-ATCTAAGATTGGACAGGACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACA-GACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * **
16626147 AACACGCAGGGGGGA-TCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCTGGTTGAGCA
64 AACACGCAGTGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGTG
* * *
16626211 CCTGCACGCCCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * * * *
16626241 GCAGAGGGAGTTCATTCAATGTCTAAGCTCCAGTCGGACCGAGGGTTGTTGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGAT-CAGACAGACTGAGGGTTGTGGCAGCAGGATCGACA
* * ** * * * * *
16626306 ACACGTAGATGGGAACCAGGCCGAACCCC-GACTTGCGCATTATGCCT-TTTCGGCTGGCTCAGT
65 ACACGCAG-TGGGGACTGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCT-GGCTGGCTGAGT
* * *** *
16626369 GCCCGCACGCTCGTTTCGTGGGCTCAATTAT
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
16626400 GCATCCGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGA-CAGACTGAGGGTTGTGGCAGCAGGATCGAC
* * *
16626464 AGCACGCAGTGGGGACTGGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGC
64 AACACGCAGTGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGTGC
16626529 CCGCACGCTCA-TTCTGTGGGTTGGCTTAG
129 CCGCACGCTCATTTC-GTGGGTTGGCTTAG
*
16626558 GCATAGGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16626585 CATACGGAGT
Statistics
Matches: 261, Mismatches: 71, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 7 0.03
158 138 0.53
159 116 0.44
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGACTGAGGGTTGTGGCAGCAGGATCGACAA
CACGCAGTGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGTGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16626594 original size:26 final size:26
Alignment explanation
Indices: 16626558--16626610 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16626548 GTTGGCTTAG
*
16626558 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16626584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16626610 G
1 G
16626611 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16626971 original size:26 final size:26
Alignment explanation
Indices: 16626935--16626987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16626925 GTTGACTTAG
16626935 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16626961 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16626987 G
1 G
16626988 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16627269 original size:159 final size:159
Alignment explanation
Indices: 16627016--16627464 Score: 485
Period size: 159 Copynumber: 2.8 Consensus size: 159
16627006 TTTCGATAGT
* * * *
16627016 AGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCTTGGCTTGCACATTCTACCTCTTCGATCG
1 AGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGATCG
* * *
16627081 GCTGAGTGCCCACACGC-CTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GCTGAGTGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
16627145 GCCCCAG-CCAGACCGAGGGTTGTTGTAGC
130 GCACCAGACCAGACCGAGGGTTGTGGCAGC
* * * * * **
16627174 GGGACCGACAGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCGTATTATGCCTCTTCGGCC
1 AGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGATC
* * * * *
16627239 GGCTCAATGCCCGCACACTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTA
65 GGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* * * * * *
16627303 A-TATCGGATCGGACTGAGGGTTGTGGCAGC
129 AGCACCAGACCAGACCGAGGGTTGTGGCAGC
* ** * * *
16627333 AGGATCGACAGCACGCAGGGGGGACCGATCCAATCCCTGGCTTACGCATTCTACCTC-TCTGTTC
1 AGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTC-GATC
* * * *
16627397 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAA
65 GGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16627462 GCA
130 GCA
16627465 TACGGTGTTC
Statistics
Matches: 234, Mismatches: 50, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.02
158 103 0.44
159 122 0.52
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
AGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGATCG
GCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CACCAGACCAGACCGAGGGTTGTGGCAGC
Found at i:16627442 original size:158 final size:157
Alignment explanation
Indices: 16626961--16627461 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 157
16626951 CCCAGTCTAA
* * * *
16626961 GCATATGGAGTTCATTCCCA-GTCTAAGATTAGACCGGA-TCGAGGGTT-TCGATAGTAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAA-ATCAGACCGGACT-GAGGGTTGT-GGTAGCAGGATCG
* * *
16627023 ACAGCACGCAGGGGGGACTGGGCCGATCCTTGGCTTGCACATTCTACCTCTTCGATCGGCTGAGT
62 ACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGATCGGCTGAGT
* *
16627088 GCCCACACGC-CTATTTCATGGGTTGGCTTAG
127 GCCCGCACGCTC-ATTTCGTGGGTTGGCTTAG
* ** * * * * *
16627119 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTTGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAA--ATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGAC
* * * * ** * *
16627183 AGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCGTATTATGCCTCTTCGGCCGGCTCAATG
64 AGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGATCGGCTGAGTG
* * *
16627248 CCCGCACACTCATTTCGTGGGTTGACTTAT
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
16627278 GCATACGGAGTTCATTCCCA-GTCTAATATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAA-ATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGAC
** * * * * *
16627342 AGCACGCAGGGGGGACCGATCCAATCCCTGGCTTACGCATTCTACCTC-TCTGTTCGACTGAGCG
64 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTC-GATCGGCTGAGTG
*
16627406 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
16627436 GTATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16627462 GCATACGGTG
Statistics
Matches: 274, Mismatches: 59, Indels: 20
0.78 0.17 0.06
Matches are distributed among these distances:
157 8 0.03
158 138 0.50
159 124 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGATCGGCTGAGTGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16627474 original size:26 final size:26
Alignment explanation
Indices: 16627438--16627488 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16627428 TGGCTTAGGT
16627438 ATACGGAGTTCATTC-CATGTCTAAGC
1 ATACGGAGTTCATTCTCA-GTCTAAGC
*
16627464 ATACGGTGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCTCAGTCTAAG
16627489 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCTCAGTCTAAGC
Found at i:16627671 original size:26 final size:26
Alignment explanation
Indices: 16627635--16627684 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16627625 GACTTAGGCA
16627635 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
16627661 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
16627685 ACCGGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Done.