Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 140 of 402
Found at i:16627673 original size:196 final size:196
Alignment explanation
Indices: 16627328--16627701 Score: 509
Period size: 196 Copynumber: 1.9 Consensus size: 196
16627318 GAGGGTTGTG
* * *
16627328 GCAGCAGGATCGACAGCACGCAGGGGGGACCGATCCAATCCCTGGCTTACGCATTCTACCTCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCTGGCTTACACATTCTACCTCTCC
** * * *
16627393 GTTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGT
66 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
* * *
16627458 CTAAGCATACGGTGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGTTTACGATAGCAGGACC
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGTTTACGATAGCAGGACC
16627523 A
196 A
* * * * *
16627524 GCAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCAAT-CCTCGGCTTGCACATTCTGCCTCTC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCT-GGCTTACACATTCTACCTCTC
* **
16627588 CGGCCGGCTGAGCGCTGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
65 CGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAT
* * * *
16627652 GTCTAAGCGTACGGAGTTCATTCCCAGTGTAAGACCGGATCAGACCGAGG
129 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGG
16627702 GTGGCTGCAT
Statistics
Matches: 153, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 3 0.02
196 147 0.96
197 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (196 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCAATCCCTGGCTTACACATTCTACCTCTCC
GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGTTTACGATAGCAGGACC
A
Found at i:16628359 original size:26 final size:26
Alignment explanation
Indices: 16628330--16628382 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628320 GTTGACTTAG
* *
16628330 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16628356 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16628382 G
1 G
16628383 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16628830 original size:158 final size:156
Alignment explanation
Indices: 16628356--16628857 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 156
16628346 CCCAGTCTAA
* * *
16628356 GCATACAGAGTTCATTCCCA-GTCTAAGATCAAACTGGATTGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAAC-GGATCGAGGGTTGTGGTAGCAGGATCGGC
* * * * **
16628420 AGCACGCAGGGGGGGCCGGACCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCCGAGCGC
64 AGCACGCAGGGGGGACCGG-CCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGC
* * *
16628485 CCGCACG-TCCCTTTCGTGGCTTGGCTTAG
128 CCGCACGCT-CATTTCATGGGTTGGCTTAG
* ** * * * * *
16628514 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGATGGTTGTGGCT-GCGGGAGT-GG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAAACGGATCGAGGGTTGTGG-TAGCAGGA-TCGG
* * * * *
16628577 CAGCACGTAGAGGGGAACTGGGCCGATCCTCGGCTTACGTATTATGCCTCTCCGGCCGGCTCAA-
63 CAGCACGCAG-GGGGGAC-CGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCT-AAG
* *
16628641 CGCCCGCACGCTCATTTCATGTGTTGACTTAG
125 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * *
16628673 GTATACGGAGTTCATTCTCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATC-AAACGGATCGAGGGTTGTGGTAGCAGGATCGGC
* * *
16628737 AGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCTGGCTAAGCGC
64 AGCACGCAGGGGGGACCG-GCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGC
* * *
16628802 CCGTATGCTCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCATTTCATGGGTTGGCTTAG
16628831 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16628858 CATACGAAGT
Statistics
Matches: 276, Mismatches: 53, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 8 0.03
158 143 0.52
159 119 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACGGATCGAGGGTTGTGGTAGCAGGATCGGCAG
CACGCAGGGGGGACCGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGCCCG
CACGCTCATTTCATGGGTTGGCTTAG
Found at i:16628861 original size:26 final size:26
Alignment explanation
Indices: 16628831--16628883 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628821 GTTGGCTTAG
*
16628831 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16628857 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16628883 G
1 G
16628884 ATAAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16629245 original size:25 final size:26
Alignment explanation
Indices: 16629211--16629262 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
16629201 GTTGACTTAG
16629211 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16629236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16629262 G
1 G
16629263 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16629602 original size:26 final size:26
Alignment explanation
Indices: 16629552--16629604 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16629542 GTTGGCTTAG
* *
16629552 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16629578 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16629604 G
1 G
16629605 ATCAGACAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16629779 original size:337 final size:339
Alignment explanation
Indices: 16628577--16629915 Score: 1056
Period size: 337 Copynumber: 3.8 Consensus size: 339
16628567 GCGGGAGTGG
* * * * * ** * * *
16628577 CAGCACGTAGAGGGGAACTGGGCCGATCCTCGGCTTACGTATTATGCCTCTCCGGCCGGCTCAAC
1 CAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTACGCATTCCGCCTCTCCGACCGGCTGAGC
* * * * * * * * *
16628642 GCCCGCACGCTCATTTCATGTGTTGACTTAGGTATACGGAGTTCATTCTCA-GTCTAAGA-TCGG
65 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTC-CATGTCTAAGACCCAG
* * * * * * * * * *
16628705 ATCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCA-G
129 -CCGAACCAAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGAT-CCCAGG
* * * * *
16628768 CTTACGCATTCTGCCTCTCCGG-CTGGCTAAGCGCCCGTATGCTCGTTTCATGGGTTGGCTTAGG
192 CTTACGCATTATGCCTCTCCGGTC-GGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGG
* * *
16628832 CATACGGAGTTCATTCCATGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATAAGATCGGAT
256 CATACGGAGTTCATTCCA-GTCTAAGCATACAG-AGTTCATTCCCAATCTAAGATCAGA-C-CA-
* * *
16628896 CGAGGATTGCGGCAGCAAGACCAGTAGTTGGATCGA
316 -GACGA--G-GGTA-C-A-A-CAGCA----GATCGA
* * * * * * * * ** *
16628932 CAGCACGTATGGGGGACTGAGCCAATCCCCAGCTTGCGGATTCTACCTCTCCGGCCGGCTGAGCG
1 CAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCCGCCTCTCCGACCGGCTGAGCG
* * * * * *
16628997 CCCGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA-ACCCCCA-
66 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGA--CCCAG
* * * * * *
16629060 CCGGACCGAGGGCTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCAGGC
129 CCGAACCAAAGGTTGTGGCAGC--G---GG-A-C-----CGACAGCACGCAGAGGGGGACCGGGC
*
16629125 TGATCCTC-GGCTTACGCATTATGCCTCTCTAGTCGGCCTCTCTGGCCGGTTGAGCGCCCGTATG
182 CGATCC-CAGGCTTACGCATTATGCCTCTC----CGG------T---CGGTTGAGCGCCCGTATG
* * *
16629189 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCC
233 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAGAGTTCATTCC
* ***
16629254 CAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGATCGA
298 CAATCTAAGATCAGACCAGA-CGAGGG-TACAACAGCAGATCGA
* * * * *
16629298 CAGCACGCAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGTG
1 CAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCCGCCTCTCCGACCGGCTGAGCG
*
16629363 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGACCCAGCC
66 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGACCCAGCC
* * * * * * * *
16629428 GAATCGAGGGTTGTGGCTGTGGGACCGGCAGCATGCAGAGGGGGACCGGGCCGATCCCAGGCTTG
131 GAACCAAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCAGGCTTA
* * *
16629493 CGCATTATGCCTCTCCGGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
196 CGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATAC
16629558 GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGA-CAG-C-A-GG-
261 GGAGTTCATTCCA-GTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACGAGGGT
16629618 ACCAACAGCAGGATCGA
325 A-CAACAGCA-GATCGA
* * * * * *
16629635 CCGCATG-TAGGGTGGACCGGGCCGAT-CCTGAGCTTATGCATTCCGCCTCTCCGCCCGG-TCGA
1 CAGCACGCAAGGG-GGACCGGGCCGATCCCCG-GCTTACGCATTCCGCCTCTCCGACCGGCT-GA
** *
16629697 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGCCCCA
63 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGACCCA
* * *
16629762 GTCGAACCAAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGC
128 GCCGAACCAAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCAGGC
* * * * * *
16629827 TTATGCATTATGCCTCTTCGGTCGGTTCAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCA
193 TTACGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCA
* *
16629892 CACGGAGTTCATTCCCAATCTAAG
258 TACGGAGTTCATT-CCAGTCTAAG
16629916 ATCAGACCGA
Statistics
Matches: 816, Mismatches: 122, Indels: 110
0.78 0.12 0.10
Matches are distributed among these distances:
335 1 0.00
336 13 0.02
337 237 0.29
338 4 0.00
339 1 0.00
341 57 0.07
342 37 0.05
344 1 0.00
350 3 0.00
353 4 0.00
354 156 0.19
355 9 0.01
356 1 0.00
359 3 0.00
360 2 0.00
361 2 0.00
364 1 0.00
365 4 0.00
366 140 0.17
367 33 0.04
370 3 0.00
371 3 0.00
373 3 0.00
374 2 0.00
375 2 0.00
376 2 0.00
377 1 0.00
378 1 0.00
379 36 0.04
380 53 0.06
381 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (339 bp):
CAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCCGCCTCTCCGACCGGCTGAGCG
CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGACCCAGCC
GAACCAAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCAGGCTTA
CGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACGAGGGTA
CAACAGCAGATCGA
Found at i:16629943 original size:159 final size:157
Alignment explanation
Indices: 16629787--16630106 Score: 358
Period size: 157 Copynumber: 2.0 Consensus size: 157
16629777 GTGGCAGCGG
** *
16629787 GACCGACAGCACGCAGAGGGGGACC-GGGCTGATCCCCGGCTTATGCATTATGCCTCTTCGGTCG
1 GACCGACAGCACGCAG-GGGGGACCGGGGC-GATCCCCGGCTTACACATTATACCTCTTCGGTCG
** *
16629851 GTTCAGTGCCCGCATGCTC-ATTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAA
64 ACTCAGCGCCCGCATGCTCGATTTC-T-GGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAA
16629915 GATCAGACCGAACCGAGGGTTACAGCAGCAA
127 GATCAGACCGAACCGAGGGTTACAGCAGCAA
* * * * * *
16629946 GATCGACAGTACGCAGGGGGGACCGGGGCGATCCCTGGCTTGCACATTCTACCTTTTCGGTCGAC
1 GACCGACAGCACGCAGGGGGGACCGGGGCGATCCCCGGCTTACACATTATACCTCTTCGGTCGAC
* * * ** * * * *
16630011 TGAGCGCCCGCATGCTCGTTTTCTGGTTGGCTTAGGCGTATGGAGTTCATTCCTAGTCTAAGATT
66 TCAGCGCCCGCATGCTCGATTTCTGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAAGATC
* * *
16630076 GGACCGGACCGAGGGTTGC-GACAGCAA
131 AGACCGAACCGAGGGTTACAG-CAGCAA
16630103 GACC
1 GACC
16630107 AGTAGCAGGA
Statistics
Matches: 133, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.01
157 59 0.44
158 51 0.38
159 22 0.17
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GACCGACAGCACGCAGGGGGGACCGGGGCGATCCCCGGCTTACACATTATACCTCTTCGGTCGAC
TCAGCGCCCGCATGCTCGATTTCTGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAAGATC
AGACCGAACCGAGGGTTACAGCAGCAA
Found at i:16630104 original size:157 final size:159
Alignment explanation
Indices: 16629790--16630092 Score: 362
Period size: 158 Copynumber: 1.9 Consensus size: 159
16629780 GCAGCGGGAC
** * **
16629790 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTATGCATTATGCCTCTTCGGTCGGTTC
1 CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTACACATTATACCTCTTCGGTCGACTC
*
16629855 AGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAAGATCA
66 AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAAGATCA
16629920 GACCGAACCGAGGGTTACAGCAGCAAGAT
131 GACCGAACCGAGGGTTACAGCAGCAAGAT
* * * * *
16629949 CGACAGTACGCAG-GGGGGACCGGGGC-GATCCCTGGCTTGCACATTCTACCTTTTCGGTCGACT
1 CGACAGCACGCAGAGGGGGACC-GGGCTGATCCCCGGCTTACACATTATACCTCTTCGGTCGACT
* * * ** * * *
16630012 GAGCGCCCGCATGCTCGTTTTC-T-GGTTGGCTTAGGCGTATGGAGTTCATTCCTAGTCTAAGAT
65 CAGCGCCCGCATGCTC-ATTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAAGAT
** *
16630075 TGGACCGGACCGAGGGTT
129 CAGACCGAACCGAGGGTT
16630093 GCGACAGCAA
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 49 0.41
158 51 0.43
159 20 0.17
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTACACATTATACCTCTTCGGTCGACTC
AGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAATCTAAGATCA
GACCGAACCGAGGGTTACAGCAGCAAGAT
Found at i:16630246 original size:26 final size:26
Alignment explanation
Indices: 16630217--16630268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16630207 GTTGGCTTAG
16630217 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16630243 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16630269 TATTTTAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16631707 original size:26 final size:26
Alignment explanation
Indices: 16631658--16631709 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16631648 GTTGGCTTAG
*
16631658 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16631684 GCATACGGGGTTCATTTCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
16631710 AATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16632061 original size:26 final size:26
Alignment explanation
Indices: 16632025--16632077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16632015 GTTAACTTAG
*
16632025 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
16632051 GCATAAGGAGTTCATTCCCTGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
16632077 G
1 G
16632078 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:16632467 original size:341 final size:343
Alignment explanation
Indices: 16631953--16633420 Score: 1016
Period size: 368 Copynumber: 4.3 Consensus size: 343
16631943 GGACCAGGCT
* * * * * * *
16631953 GATCCCTGACTTGCACATTAGGCCTCTCCGACCGGTTGAGTGCTCGAACGCTCGTTTTATGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
* *
16632018 AACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCTGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
*** ** * * * *
16632083 ACCAGACCGAGGGTTTTGGCAGCAAGATCGGTAACAGGCAGGGGGGACCGAGTCGA-CCTCGGCT
131 ACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGATCCCCAGC-
* ** * * * * *
16632147 TTTA-CATTCTGCCTCTCCGGTCGGTT-GAGCACCCGGATGCTCATTTCGTGGGTTGGCTTAAGC
195 TTGAGCATTCTGCCTCTCCGACCGGTTCGA-CACCCGCACGCCCATTTCATGGGTTAGCTTAAGC
* *
16632210 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGT-GCAGCGGGACCGACAGC
259 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGTGGCAGCGGGACCGACAGC
16632274 ACAAAGAGAGGGA-TCGGGCC
324 ACAAAGAGAGGGACT-GGGCC
* * * * *
16632294 GATCCCCGTCTTGCGCATTATGCCCCTCCGGCCGGCTCAGTGCCCGTACGCTCATTTTGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
* * * *
16632359 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTGAGATCGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * * * *
16632424 ACTGGACCGAGGGTGGCGGTAGTAGGTTTGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCT
131 ACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGATCCCCAGCT
* * *
16632489 TGAGCATTTTGCCTCTCCGACCGGTTCGACACCCGCACGCCCGTTTCATGGGTTAGCTTAGGCAT
196 TGAGCATTCTGCCTCTCCGACCGGTTCGACACCCGCACGCCCATTTCATGGGTTAGCTTAAGCAT
* * *
16632554 AGGGAGTTCATTCCATTTCTAAGCCCCAGTCGGATCGACGATTGTGGCAGCGGGACCGCCAGCAC
261 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGTGGCAGCGGGACCGACAGCAC
*
16632619 ACAGAGAGGGACTGGGCC
326 AAAGAGAGGGACTGGGCC
* * * * * * *
16632637 GATCCCCGGCTTTCGTATTATGCCTCTTCGATCGGTTCAGTGCCCGTACGCTTGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
16632702 GACTTAGGCATAC--AG---------AGT-T---C------A--T--TT-CCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * * * *
16632741 ATCGA-ACTGAGGGTTGCTGCAGCAGGATCGATAGCACGTAGGGGGGACTGGGCCAATCCCCGA-
131 A-CCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGATCCCC-AG
* * * ** ** * * * ** *
16632804 CTTGCGCATTTTACCTCTCCGACCGACT-GAGTGCCCGCACGCTCGTTTCGTGGGTGGGCTTAGG
194 CTTGAGCATTCTGCCTCTCCGACCGGTTCGA-CACCCGCACGCCCATTTCATGGGTTAGCTTAAG
* * * * * * * * *
16632868 CATACGTAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGAACCGGCAA
258 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGTGGCAGCGGGACCGAC-A
* **
16632933 TGGGATCGGTAACACGCAGAGGGGGA-TCGGGTT
322 --GCA-C---AA-A-G-AGA--GGGACT-GGGCC
* * * * * *
16632966 GATCTCCGGCTTGCACATTATACCTCTCCGACCGGCCTCTCCGACCAGCTGAACGCACGCATGCT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGG--T-T-----CAG-TG--C-C-CGTACGCT
* * *
16633031 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
53 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCC
* * * * * * * * * *
16633096 AGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGGG
118 AGTCTAAGATCAGACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAG
* * * * * * ** * *
16633161 CC-ACTCTCCAGCTT-ACGCATTTTGCCTCTTCAACCGGAT-GAGCGCCCGCACATCCGTTTTAT
183 CCGA-TCCCCAGCTTGA-GCATTCTGCCTCTCCGACCGGTTCGA-CACCCGCACGCCCATTTCAT
* * * * * * * *
16633223 GGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTAGCA
245 GGGTTAGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGTGGCA
** * * *
16633288 GCGGGACCGACAGCACGCAGAGGGGGACCGGGTC
310 GCGGGACCGACAGCACAAAGAGAGGGACTGGGCC
* * * * * *
16633322 GATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCTG-CCGAACGCTCGTTTCGTGGGT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTCAG-TGCCCGTACGCTCGTTTTGTGGGT
* * *
16633386 TGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
16633421 ATCAGACCGA
Statistics
Matches: 895, Mismatches: 167, Indels: 128
0.75 0.14 0.11
Matches are distributed among these distances:
316 2 0.00
317 162 0.18
318 5 0.01
320 3 0.00
321 1 0.00
322 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 3 0.00
328 1 0.00
329 35 0.04
331 2 0.00
332 4 0.00
337 3 0.00
338 2 0.00
340 1 0.00
341 158 0.18
342 124 0.14
343 151 0.17
344 4 0.00
348 6 0.01
353 4 0.00
354 1 0.00
356 38 0.04
357 1 0.00
358 2 0.00
359 1 0.00
360 1 0.00
363 1 0.00
364 1 0.00
365 3 0.00
367 5 0.01
368 166 0.19
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
GATCCCCGACTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGATCCCCAGCT
TGAGCATTCTGCCTCTCCGACCGGTTCGACACCCGCACGCCCATTTCATGGGTTAGCTTAAGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGTGGCAGCGGGACCGACAGCAC
AAAGAGAGGGACTGGGCC
Found at i:16632700 original size:159 final size:158
Alignment explanation
Indices: 16632453--16632904 Score: 378
Period size: 159 Copynumber: 2.8 Consensus size: 158
16632443 TAGTAGGTTT
* * * * * * * **
16632453 GACAGCACGCAGGGGGGACCGGGCCGATCCCC-AGCTTGAGCATTTTGCCTCTCCGACCGGTTC-
1 GACAGCACACAGGAGGGACTGGGCCAATCCCCGA-CTTGCGCATTATACCTCTCCGACCGACTCA
** * * * *
16632516 GACACCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCCCC
65 G-TGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* *
16632581 AGTCGGATC-GACGATTG-TGGCAGCGGGACC
128 AGTCGGAACTGACGATTGCT-GCAGCAGGACC
* * * * * * * * **
16632611 GCCAGCACACAGAGAGGGACTGGGCCGATCCCCGGCTTTCGTATTATGCCTCTTCGATCGGTTCA
1 GACAGCACACAG-GAGGGACTGGGCCAATCCCCGACTTGCGCATTATACCTCTCCGACCGACTCA
* * * **
16632676 GTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCCA-GTCTAAG-ATC
65 GTGCCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCC
* * *
16632739 AGATC-GAACTGAGGGTTGCTGCAGCAGGATC
128 AG-TCGGAACTGACGATTGCTGCAGCAGGACC
* ** * * *
16632770 GATAGCACGTAGGGGGGACTGGGCCAATCCCCGACTTGCGCATTTTACCTCTCCGACCGACTGAG
1 GACAGCACACAGGAGGGACTGGGCCAATCCCCGACTTGCGCATTATACCTCTCCGACCGACTCAG
* *
16632835 TGCCCGCACGCTCGTTTCGTGGGTGGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCCCCAG
66 TGCCCGCACGCTCGTTTCGTGGGT-TGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
*
16632900 CCGGA
130 TCGGA
16632905 CCGAGGGTTG
Statistics
Matches: 231, Mismatches: 51, Indels: 23
0.76 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 105 0.45
159 114 0.49
160 7 0.03
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
GACAGCACACAGGAGGGACTGGGCCAATCCCCGACTTGCGCATTATACCTCTCCGACCGACTCAG
TGCCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
CGGAACTGACGATTGCTGCAGCAGGACC
Found at i:16632701 original size:343 final size:341
Alignment explanation
Indices: 16631953--16633420 Score: 1035
Period size: 317 Copynumber: 4.3 Consensus size: 341
16631943 GGACCAGGCT
* * * * * * * *
16631953 GATCCCTGACTTGCACATTAGGCCTCTCCGACCGGTTGAGTGCTCGAACGCTCGTTTTATGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
* *
16632018 AACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCTGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
*** ** * * * *
16632083 ACCAGACCGAGGGTTTTGGCAGCAAGATCGGTAACAGGCAGGGGGGACCGAGTCGACCTCGGCTT
131 ACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGACCCCAGCTT
* ** * * * * *
16632148 TTACATTCTGCCTCTCCGGTCGGTTGAGCACCCGGATGCTCATTTCGTGGGTTGGCTTAAGCATA
196 TGACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCCCATTTCATGGGTTAGCTTAAGCATA
* *
16632213 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGCAGCGGGACCGACAGCACAA
261 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGTGCAGCGGGACCGACAGCACAA
16632278 AGAGAGGGATCGGGCC
326 AGAGAGGGATCGGGCC
* * * * *
16632294 GATCCCCGTCTTGCGCATTATGCCCCTCCGGCCGGCTCAGTGCCCGTACGCTCATTTTGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
* * * *
16632359 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGAGTTCATTCCCAGTCTGAGATCGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * * * *
16632424 ACTGGACCGAGGGTGGCGGTAGTAGGTTTGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGC-
131 ACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGA-CCCCAGCT
* * *
16632488 TTGAGCATTTTGCCTCTCCGACCGGTTCGA-CACCCGCACGCCCGTTTCATGGGTTAGCTTAGGC
195 TTGA-CATTCTGCCTCTCCGACCGGTT-GAGCACCCGCACGCCCATTTCATGGGTTAGCTTAAGC
* * *
16632552 ATAGGGAGTTCATTCCATTTCTAAGCCCCAGTCGGATCGACGATTGTGGCAGCGGGACCGCCAGC
258 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGT-GCAGCGGGACCGACAGC
*
16632617 ACACAGAGAGGGA-CTGGGCC
322 ACAAAGAGAGGGATC-GGGCC
* * * * * *
16632637 GATCCCCGGCTTTCGTATTATGCCTCTTCGATCGGTTCAGTGCCCGTACGCTTGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
16632702 GACTTAGGCATAC--AG---------AGT-T---C------A--T--TT-CCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * * * *
16632741 ATCGA-ACTGAGGGTTGCTGCAGCAGGATCGATAGCACGTAGGGGGGACTGGGCCAATCCCC-GA
131 A-CCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGA-CCCCAG-
* * * ** ** * * * ** *
16632804 C-TTGCGCATTTTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTGGGCTTAGG
193 CTTTG-ACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCCCATTTCATGGGTTAGCTTAAG
* * * * * * * * *
16632868 CATACGTAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGAACCGGCAA
257 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGT-GCAGCGGGACCGAC-A
* **
16632933 TGGGATCGGTAACACGCAGAGGGGGATCGGGTT
320 --GCA-C---AA-A-G-AGA--GGGATCGGGCC
* * * * *
16632966 GATCTCCGGCTTGCACATTATACCTCTCCGACCGGCCTCTCCGACCAGCTGAACGCACGCATGCT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGG--T-T-----CAG-TG--C-C-CGTACGCT
* * *
16633031 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
53 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCC
* * * * * * * * * *
16633096 AGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGGG
118 AGTCTAAGATCAGACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAG
* * * * * * ** * *
16633161 CC-ACTCTCCAGCTTACG-CATTTTGCCTCTTCAACCGGATGAGCGCCCGCACATCCGTTTTATG
183 CCGAC-C-CCAGCTT-TGACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCCCATTTCATG
* * * * * * *
16633224 GGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTAGCAG
245 GGTTAGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGT-GCAG
** * * *
16633289 CGGGACCGACAGCACGCAGAGGGGGACCGGGTC
309 CGGGACCGACAGCACAAAGAGAGGGATCGGGCC
* * * * *
16633322 GATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCTG-CCGAACGCTCGTTTCGTGGGT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAG-TGCCCGTACGCTCGTTTTGTGGGT
* * *
16633386 TGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
16633421 ATCAGACCGA
Statistics
Matches: 894, Mismatches: 166, Indels: 132
0.75 0.14 0.11
Matches are distributed among these distances:
316 3 0.00
317 161 0.18
318 4 0.00
320 3 0.00
321 1 0.00
322 1 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 3 0.00
329 35 0.04
330 1 0.00
331 2 0.00
332 4 0.00
337 3 0.00
338 2 0.00
340 1 0.00
341 158 0.18
342 125 0.14
343 151 0.17
344 3 0.00
348 6 0.01
353 4 0.00
354 1 0.00
356 39 0.04
357 1 0.00
358 2 0.00
359 1 0.00
360 1 0.00
363 1 0.00
364 1 0.00
365 3 0.00
366 1 0.00
367 5 0.01
368 161 0.18
369 2 0.00
370 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (341 bp):
GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGGTGGCGGCAGCAAGATCGACAACACGCAGGGGGGACCGAGCCGACCCCAGCTT
TGACATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCCCATTTCATGGGTTAGCTTAAGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGACGATTGTGCAGCGGGACCGACAGCACAA
AGAGAGGGATCGGGCC
Found at i:16632914 original size:158 final size:157
Alignment explanation
Indices: 16632453--16633579 Score: 484
Period size: 158 Copynumber: 6.8 Consensus size: 157
16632443 TAGTAGGTTT
* *
16632453 GACAGCACGCAGGGGGGACCGGGCCGATCCCC-AGCTTGAGCATTTTGCCTCTCCGACCGGTTCG
1 GACAGCACGCAGGGGGGACTGGGCCGATCCCCGA-CTTGCGCATTTTGCCTCTCCGACCGGTT-G
** * * * * *
16632517 A-CACCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCCCC
64 AGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGCCCC
* * * *
16632581 AGTCGGATCGACGATTGTGGCAGCGGGACC
128 AGTCGGACCGAGGGTTGTGGCAGCAGGACC
* * * * * * * * * *
16632611 GCCAGCACACAGAGAGGGACTGGGCCGATCCCCGGCTTTCGTATTATGCCTCTTCGATCGGTTCA
1 GACAGCACGCAG-GGGGGACTGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGTTGA
* * * **
16632676 GTGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTTCCA-GTCTAAG-ATC
65 GTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCA-TTCCATGTCTAAGCCCC
* * *
16632739 AGATCGAACTGAGGGTTGCT-GCAGCAGGATC
128 AG-TCGGACCGAGGGTTG-TGGCAGCAGGACC
* * * * **
16632770 GATAGCACGTAGGGGGGACTGGGCCAATCCCCGACTTGCGCATTTTACCTCTCCGACCGACTGAG
1 GACAGCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGTTGAG
*
16632835 TGCCCGCACGCTCGTTTCGTGGGTGGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCCCCAG
66 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCCCCAG
* * *
16632900 CCGGACCGAGGGTTGTGGTAGCAGAACCGGC
130 TCGGACCGAGGGTTGTGGCAGCAGGA-C--C
* ** * * * * *
16632931 AATGGGATCGGTAACACGCAGAGGGGGA-TCGGGTTGATCTCCGGCTTGCACATTATACCTCTCC
1 -----GA-C---AGCACGCAG-GGGGGACT-GGGCCGATCCCCGACTTGCGCATTTTGCCTCTCC
* * *
16632995 GACCGGCCTCTCCGACCAGCTGAACGCACGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGA
55 GACCGG--T-T--G---AG-TG--C-C-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GA
* * * * * ** *
16633060 GTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
106 GTTCAT-TCCA-TGT---C-TA---AG--C---CCCAGTC--GGA-CCGA-GGGTT-----GTGG
* *
16633125 C-GACAGCA-G
148 CAG-CAGGACC
* * * *
16633134 GATCGATAGCACGCAGGGGGGA-TCGGGCC-ACTCTCC-AGCTTACGCATTTTGCCTCTTCAACC
1 GA-C---AGCACGCAGGGGGGACT-GGGCCGA-TCCCCGA-CTTGCGCATTTTGCCTCTCCGACC
* * * ** * *
16633196 GGATGAGCGCCCGCAC-ATCCGTTTTATGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTA
59 GGTTGAGTGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTA
* * * *
16633260 AGCCCCAGCCAGACCGAGGGTTGTAGCAGCGGGACC
122 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACC
* * * * * * * *
16633296 GACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTCA
1 GACAGCACGCAG-GGGGGACTGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGTTGA
* * * * **
16633361 GCTG-CCGAACGCTCGTTTCGTGGGTTGACTTAGGCGTATGGAGTTCATTCCCA-GTCTAAG-AT
65 G-TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATT-CCATGTCTAAGCCC
* * * ** *
16633423 CAGACCGAACCGAGGGTTGCGATAGCAGGATC
127 CAG-TCGGACCGAGGGTTGTGGCAGCAGGACC
* * * * * * * * * *
16633455 GACAGCACGTAGGGGGGACAGGGTCGATTCCCGGCTTGTGCATTCTACCTCTTCGACCGGCTGAG
1 GACAGCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGTTGAG
* *
16633520 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGC
16633580 ATACAGAGTT
Statistics
Matches: 722, Mismatches: 166, Indels: 161
0.69 0.16 0.15
Matches are distributed among these distances:
157 11 0.02
158 223 0.31
159 222 0.31
160 12 0.02
161 9 0.01
162 3 0.00
166 4 0.01
167 3 0.00
168 3 0.00
170 14 0.02
171 38 0.05
173 1 0.00
174 1 0.00
175 2 0.00
176 1 0.00
178 2 0.00
179 3 0.00
180 2 0.00
182 3 0.00
183 5 0.01
184 69 0.10
185 5 0.01
186 3 0.00
188 1 0.00
189 3 0.00
190 2 0.00
192 1 0.00
193 2 0.00
194 1 0.00
195 1 0.00
196 1 0.00
197 36 0.05
198 20 0.03
200 2 0.00
201 3 0.00
202 2 0.00
206 1 0.00
207 7 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GACAGCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGTTGAG
TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCCCCAGT
CGGACCGAGGGTTGTGGCAGCAGGACC
Found at i:16633080 original size:26 final size:26
Alignment explanation
Indices: 16633051--16633103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16633041 GTTGACTTAG
16633051 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16633077 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16633103 G
1 G
16633104 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16633439 original size:159 final size:158
Alignment explanation
Indices: 16633077--16633578 Score: 536
Period size: 158 Copynumber: 3.2 Consensus size: 158
16633067 CCCAGTCTAA
* * * *
16633077 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGAT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * *
16633141 AGCACGCAGGGGGGATCGGG-CCACTCTCCAGCTTACGCATTTTGCCTCTTCAACCGGATGAGCG
65 AGCACGCAGGGGGGACCGGGTCGACTC-CCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCG
* * *
16633205 CCCGCAC-ATCCGTTTTATGGGTTGGGTTAG
129 CCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* ** * * *
16633235 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-AGACCGAGGGTTG-TAGCAGCGGGACCG
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACCGA-ACCGAGGGTTGCGA-CAGCAGGATCG
* * *
16633297 ACAGCACGCAGAGGGGGACCGGGTCGA-TCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTCA
63 ACAGCACGCAG-GGGGGACCGGGTCGACTCCC-GGCTTGCGCATTATGCCTCTTCGACCGGCTGA
* * *
16633361 GCTG-CCGAACGCTCGTTTCGTGGGTTGACTTAG
126 GC-GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
16633394 GCGTATGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCGATAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
16633458 AGCACGTAGGGGGGACAGGGTCGATTCCCGGCTTGTGCATTCTACCTCTTCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGACTCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCGC
16633523 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
16633552 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
16633579 CATACAGAGT
Statistics
Matches: 281, Mismatches: 47, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
157 8 0.03
158 147 0.52
159 117 0.42
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGACTCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16633604 original size:26 final size:26
Alignment explanation
Indices: 16633552--16633604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16633542 GTTGGCTTAG
* * *
16633552 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTATAA
16633578 GCATACAGAGTTCATTCCAAGTATAA
1 GCATACAGAGTTCATTCCAAGTATAA
16633604 G
1 G
16633605 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTATAA
Found at i:16634260 original size:159 final size:158
Alignment explanation
Indices: 16634020--16634458 Score: 456
Period size: 159 Copynumber: 2.8 Consensus size: 158
16634010 ATATGATTGG
* * * *
16634020 CAGCACGCAG-GGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGC
1 CAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGC
* * * *
16634084 GCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCCAGC
66 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCCA-C
* * *
16634149 CGGACTGAGGGTTGTGGCATCGGGATCAA
130 CGGACTGAGGGTTATGGCAACAGGATCAA
* * * * *
16634178 CAGCACGGAGAGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCGACTCAGC
1 CAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGC
* * * *****
16634243 GCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTT-TATTCCCA-ATCTAAATTGGA
66 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCT-TT-CCATGTCTAAGCCCCA
*
16634306 CCGGACTGAGGGTTATGGCAACAGGATCGA
129 CCGGACTGAGGGTTATGGCAACAGGATCAA
* ** * * *** *
16634336 CAGCATGCA-AGGGGGACTGGGCCGATCCCCGGCTTACGCATTTTGTCC-CTCCAACCGGCTGAA
1 CAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATG-CCTCTCCGGTCGGCTGAG
* * * * *
16634399 TGCCCGCATGCTCGTTTTGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGC
16634459 ATACGGAGTT
Statistics
Matches: 226, Mismatches: 49, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 84 0.37
158 45 0.20
159 91 0.40
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
CAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCCACC
GGACTGAGGGTTATGGCAACAGGATCAA
Found at i:16634834 original size:26 final size:26
Alignment explanation
Indices: 16634797--16634849 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16634787 GTTGACTTAG
*
16634797 GCATACAGAGTTCATCCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16634823 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
16634849 G
1 G
16634850 ATTTGACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16635195 original size:26 final size:26
Alignment explanation
Indices: 16635166--16635215 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16635156 TACTTAGGCA
16635166 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
16635192 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
16635216 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:16635710 original size:159 final size:159
Alignment explanation
Indices: 16635229--16636352 Score: 526
Period size: 159 Copynumber: 6.9 Consensus size: 159
16635219 AGACCGAATC
* * * * * * *
16635229 GAGGGTT-ACGGCAGCAGGATCGACAGCACATTGG-GGGGACCGAGCCAATCCCCGGCTTGTGCA
1 GAGGGTTGACGGTAGTAGGATCGACAGCACGTAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCA
* * * * * *
16635292 TTCTGCCTCTCTGATCGACTGAGCACCTGCACACCCGTTTCATTGGTTGGCTTAGGCATAGGGAG
66 TTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
*
16635357 TTTATTCCATGTCTAAGCCCCAGTCGGA-T
131 TTCATTCCATGTCTAAGCCCCAGTC-GACT
* * * * * *
16635386 CGAGGGTT-ACGGTAGTGGGACCTACAGCACGCA-GAGGTGGATCGGGCCGATCCTCGGCTTGCG
1 -GAGGGTTGACGGTAGTAGGATCGACAGCACGTAGGAGG-GGACCGGGCCGATCCCCGGCTTGCG
* * * * * * * *
16635449 CATTATGCCTTTTCG-GCCAGTTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
64 CATTCTGCCTCTCCGATCGA-CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
** * *
16635513 GAGTTCATTCCCA-GTCTAAG-ATCGGATCGAACC
128 GAGTTCATT-CCATGTCTAAGCCCCAG-TCG-ACT
* * * *
16635546 AAGGGTTGA-GGTAAG-AGGATCGACAACACGTAGGAGGGGACCGGGCTGATCCCCGGCTTGCGT
1 GAGGGTTGACGGT-AGTAGGATCGACAGCACGTAGGAGGGGACCGGGCCGATCCCCGGCTTGCGC
* * * * *
16635609 GTTCTGCCTCTCCGATCGACTGGGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCAAACGAA
65 ATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
*
16635674 GTTCATTTCATGTCTAAGCCCCAGTCAGACT
130 GTTCATTCCATGTCTAAGCCCCAGTC-GACT
** * *
16635705 GAGGGTTGTGGTGGTAGGACCTGCAATGGGATTGACAGCACGCTTA-G-GGGGACCGGGCTGATC
1 GAGGG-T-TGACGGTA-G---T---A--GGATCGACAGCACG--TAGGAGGGGACCGGGCCGATC
* * * * * * * * *
16635768 CTCAGCGTACAG-ATTATGCCTCTCTGACCGGCCTCTCTGGTCAGCTGAACGTCCGTACGCTCGT
53 CCCGGCTTGC-GCATTCTGCCTCTCCGATC-G----ACT-G--AGC---AC--CCGCACGCTCGT
* * ** * *
16635832 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACT
104 TTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TC-GACT
* * * *
16635889 GAGGGTCGTGAC---AGTAGGATCGACAGCACGCAGG-GGGGACTGGGTCGGTCCCCGGCTTGCG
1 GAGGGT--TGACGGTAGTAGGATCGACAGCACGTAGGAGGGGACCGGGCCGATCCCCGGCTTGCG
* ** * * *
16635950 CATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
64 CATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * *
16636015 ATTTCATTCCTTGTCTAAGCCCCAGCTGGA-T
129 AGTTCATTCCATGTCTAAGCCCCAG-TCGACT
* * * * * * * * *
16636046 CGAGGGTTG-TGGCT-GTGGGACCGGCAGCACGCA-GAGGGGGGCCGGGTCGATCCCCGACTTAC
1 -GAGGGTTGACGG-TAGTAGGATCGACAGCACGTAGGA-GGGGACCGGGCCGATCCCCGGCTTGC
* * * * * ** * * * * *
16636108 GCATTATCCCTCTCCG-GCCAGCTCAGCGTCCGTACACTCGTTTCGTGGGTTGACTTATGCATAC
63 GCATTCTGCCTCTCCGATCGA-CTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * ** * *
16636172 AGAGTTCATTCCCA-GCCTAAG-ATCGGACCGGACT
127 GGAGTTCATT-CCATGTCTAAGCCCCAG-TC-GACT
* * * * * * * * *
16636206 GAGGGTTG-CAGTGGCAAGACCGACAGCACGCAGG-GGTGGATCGGGTCGATCCCCGGCTTGCAC
1 GAGGGTTGACGGTAGTAGGATCGACAGCACGTAGGAGG-GGACCGGGCCGATCCCCGGCTTGCGC
* * * *
16636269 ATTCTGCCTCTCAG-GCGGACTGAGCGCCCGCATGCTCGTTT-AGTGGGTTGGCTTAGGCATACG
65 ATTCTGCCTCTCCGATC-GACTGAGCACCCGCACGCTCGTTTCA-TGGGTTGGCTTAGGCATACG
**
16636332 GAGTTCATTCCACATCTAAGC
128 GAGTTCATTCCATGTCTAAGC
16636353 ATACGGAGTT
Statistics
Matches: 726, Mismatches: 172, Indels: 134
0.70 0.17 0.13
Matches are distributed among these distances:
156 2 0.00
157 5 0.01
158 114 0.16
159 391 0.54
160 23 0.03
161 3 0.00
162 4 0.01
163 3 0.00
165 1 0.00
166 2 0.00
169 1 0.00
170 3 0.00
171 81 0.11
172 16 0.02
173 2 0.00
174 1 0.00
176 2 0.00
177 2 0.00
179 2 0.00
180 1 0.00
181 1 0.00
182 2 0.00
183 3 0.00
184 59 0.08
185 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GAGGGTTGACGGTAGTAGGATCGACAGCACGTAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCA
TTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGTCGACT
Found at i:16637076 original size:26 final size:26
Alignment explanation
Indices: 16637047--16637097 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16637037 GTTGACTTAG
16637047 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
** *
16637073 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATCCCTAGTCTA
16637098 TTATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:16637172 original size:15 final size:15
Alignment explanation
Indices: 16637152--16637181 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16637142 GCAGGGGGAA
16637152 CCGGGCCGATCCCCT
1 CCGGGCCGATCCCCT
16637167 CCGGGCCGATCCCCT
1 CCGGGCCGATCCCCT
16637182 GCTTACACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.53, G:0.27, T:0.13
Consensus pattern (15 bp):
CCGGGCCGATCCCCT
Found at i:16637552 original size:26 final size:26
Alignment explanation
Indices: 16637516--16637568 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16637506 GTTGGCTTAG
16637516 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16637542 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16637568 G
1 G
16637569 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16639176 original size:873 final size:873
Alignment explanation
Indices: 16637480--16639191 Score: 2189
Period size: 873 Copynumber: 2.0 Consensus size: 873
16637470 TCCAATCGGC
* * *
16637480 TGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * * * *
16637545 TATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACAGTGCACATGCTGGGCTCGGGCATGTGCT
66 TACGGAGTTCATTCCCAGTCTAAGATTTTGAGCAACAGGGCACATGCTGGGCTCGGACATGTGCA
* * * * *
16637610 GGTACCGTATTTTTTTCACCAGGGGCACCATCGTCGGAGCACCCCAGAGAGCCTAACTGGCGGCT
131 GGTACCGCA-----TGCACCAGGGGCACCATCGTCGAAGCACCCCAGAGAGCCTAACCGACGGCT
* *
16637675 TTGGGGGTTCCAGCGATTGGGGGGCCGGGGTGTGCGCACATGATGTGCGATGGGGGCTGGTACTT
191 TTGGGGGTTCCAGCGATTGGGAGGCCGGGGTGTGCACACATGATGTGCGATGGGGGCTGGTACTT
* * *
16637740 GGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
256 GGCCCATATATTGGCCCCCTATCCCTCATCGAAACTTGAGAACTCACA-CCCCTAAAAGAGCATT
* *
16637805 TGAGATTTTTTAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
320 TGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTG-CTGAAAT-GGGACACCTTTTTCAAA
* * * * *
16637870 TGGTCACAGAATCTTCTCCGCTTCTAGTTTTTAGTTGAATTTTTCATGCATGCCAACAAAAATAC
383 -GATCACAAAATCTTCTCCGCTTCGAGTTTTTAGCTGAATTTTTCATGCATGCCAACAAAAAAAC
*
16637935 AAGGATCATCTCTACCAAATTTGGGGACAAATCTCTTTCTAAAAAATCCTGAACCGCAAAAAGTT
447 AAGGATCATCTCTACCAAATGTGGGGACAAATCTCTTTCTAAAAAATCCTGAACCGCAAAAAGTT
* *
16638000 TCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACAAGAAGGCTTAGTGG
512 TCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACAAAAAGGCTTAGGGG
16638065 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
577 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* * *
16638130 GAGCCCACCTACCACCCATTCGATCCTCGGCTTGCACATCCTGCCTCTCTGGTCGGCTAAGCGCC
642 GAACCCACCTACCACCCATTCGATCCTCGGCTTACACATCCTGCCTCTCTGGTCGACTAAGCGCC
* * *
16638195 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTATAAGCATACAGAGT
707 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATACAGAGT
*
16638260 TCATTCCCAGTCTAAGATCAGACCGAAATGAGGGTTCGACAACAGGAGCACACAGGAGGGATTGG
772 TCATTCCCAGTCTAAGATCAGACCGAAACGAGGGTTCGACAACA-GAGCACACA-GAGGGATTGG
16638325 GCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGAT
835 GCCGATCCCCGGCTTACGCATTTTGCCTCTCCGGCCGAT
* *
16638364 TGAGCGCCCGCACACTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
*
16638429 TACGGAGTTCATTTCCCAGTCTAAGATTTTGAGCAAC-GGGTACATGCTGGGCTCAAGGACATGA
66 TACGGAGTTCA-TTCCCAGTCTAAGATTTTGAGCAACAGGGCACATGCTGGGCTC--GGACATG-
* * * *
16638493 TGCAGGTGCCGCA-GC-TC-GGGG-ACCATCGT-GAAG-ACCCGCCGGGAG-CT-ACCGACGGCT
127 TGCAGGTACCGCATGCACCAGGGGCACCATCGTCGAAGCACCC-CAGAGAGCCTAACCGACGGCT
* *
16638550 TT-GGGG-TCC-GACGA-TGGGAGGCCGGGGGGGTAGTGCACACATGATGTGTGAATGGGTATGC
191 TTGGGGGTTCCAG-CGATTGGGAGGCC---GGGGT-GTGCACACATGATGTGCG-ATGGG--GGC
*
16638611 TGGTACTTGGCCGCATATATGTGG-CCCCTATCCGTCATC-AAACTTGAGAACTCACA-CCC-AA
248 TGGTACTTGGCC-CATATAT-TGGCCCCCTATCCCTCATCGAAACTTGAGAACTCACACCCCTAA
*
16638672 AAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATT-AAGTG-TGAAAT-GGTCACCTT
311 AAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGCTGAAATGGGACACCTT
**
16638734 TTTCAAA-AT-ACAAAATCTTCTCCGCTTCGAGTTTTTAGCTGAATTTTTTGTGCATG-CAACAA
376 TTTCAAAGATCACAAAATCTTCTCCGCTTCGAGTTTTTAGCTGAATTTTTCATGCATGCCAACAA
* *
16638796 AAAAACAA-GATCATCTCTA-C-AA-GTGGCGGACAAAAGCTTTCTAAAAATTTTTTAAAAAATC
441 AAAAACAAGGATCATCTCTACCAAATGTGG-GGAC-AAA----TCT-----CTTTCTAAAAAATC
**
16638857 C-GAACCGCAAAAAAGTTTC-TCAATCAT-AAAAGATAGAAAA-GGGTCA-CTTGCCACGAAACT
495 CTGAACCGC-AAAAAGTTTCAAAAATCATGAAAA-ATAGAAAACGGGTCATCTTGCCACGAAACT
*
16638917 TCACAAAAAGGCTTAGGGGACCAATTGTATGAATTTACAAGCCATAAAAAATGGTATTGGCATGG
558 TCACAAAAAGGCTTAGGGGACC-ATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGG
* * *
16638982 CAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTACGCATCCTGC
621 CAGAAATATGAAGATGTGCCTGAACCCACCTACCACCCATTCGATCCTCGGCTTACACATCCTGC
*
16639047 CTCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGT-GGTTGACTTAGGCATACGGAGTTCATC
686 CTCTCTGGTCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* ** * * ** *
16639111 CCCAATCTAAGCATATGGAGTTCATTCCCAGTGTAA-AT-TGAACCGGACCCGAGGGTTGTGACA
751 CCCAATATAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACC-GAAACGAGGGTT-CGACA
*
16639174 ACAGAGCACGCAGAGGGA
813 ACAGAGCACACAGAGGGA
16639192 CCACAAATCC
Statistics
Matches: 729, Mismatches: 66, Indels: 79
0.83 0.08 0.09
Matches are distributed among these distances:
863 3 0.00
864 6 0.01
865 4 0.01
866 11 0.02
867 13 0.02
868 42 0.06
869 4 0.01
870 1 0.00
871 59 0.08
872 115 0.16
873 152 0.21
874 27 0.04
875 20 0.03
876 64 0.09
877 16 0.02
878 8 0.01
879 34 0.05
880 21 0.03
881 4 0.01
884 85 0.12
885 24 0.03
886 6 0.01
887 10 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
TGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATTTTGAGCAACAGGGCACATGCTGGGCTCGGACATGTGCA
GGTACCGCATGCACCAGGGGCACCATCGTCGAAGCACCCCAGAGAGCCTAACCGACGGCTTTGGG
GGTTCCAGCGATTGGGAGGCCGGGGTGTGCACACATGATGTGCGATGGGGGCTGGTACTTGGCCC
ATATATTGGCCCCCTATCCCTCATCGAAACTTGAGAACTCACACCCCTAAAAGAGCATTTGAGAT
TTTATAGGTTTGCTACCAGTAGCCATTAAAGTGCTGAAATGGGACACCTTTTTCAAAGATCACAA
AATCTTCTCCGCTTCGAGTTTTTAGCTGAATTTTTCATGCATGCCAACAAAAAAACAAGGATCAT
CTCTACCAAATGTGGGGACAAATCTCTTTCTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACAAAAAGGCTTAGGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTGAACCCACC
TACCACCCATTCGATCCTCGGCTTACACATCCTGCCTCTCTGGTCGACTAAGCGCCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATACAGAGTTCATTCCCA
GTCTAAGATCAGACCGAAACGAGGGTTCGACAACAGAGCACACAGAGGGATTGGGCCGATCCCCG
GCTTACGCATTTTGCCTCTCCGGCCGAT
Found at i:16639907 original size:13 final size:13
Alignment explanation
Indices: 16639889--16639915 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16639879 TGCACATTAT
16639889 GCCTCTTCGATCG
1 GCCTCTTCGATCG
16639902 GCCTCTTCGATCG
1 GCCTCTTCGATCG
16639915 G
1 G
16639916 TTGAGCCCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.37, G:0.26, T:0.30
Consensus pattern (13 bp):
GCCTCTTCGATCG
Found at i:16641618 original size:26 final size:26
Alignment explanation
Indices: 16641567--16641618 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
16641557 TTGACTTAGT
* **
16641567 CATATGGAGTTCATCTCCAGTTTAAG
1 CATACGGAGTTCATCTCCAGACTAAG
16641593 CATACGGAGTTCAT-TCCCAGACTAAG
1 CATACGGAGTTCATCT-CCAGACTAAG
16641619 ATCGGACTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCTCCAGACTAAG
Found at i:16641985 original size:158 final size:157
Alignment explanation
Indices: 16641592--16642092 Score: 375
Period size: 158 Copynumber: 3.2 Consensus size: 157
16641582 TCCAGTTTAA
* * * * * *
16641592 GCATACGGAGTTCATTCCCAGACTAAGATCGGAC-TAGACTGAGGGTTACGGTAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACAT-GACCGAGGGTTACGGTAGTAGGATCGAT
* * * * * * *
16641656 AGCATGCA-GAGGGACCGGGCCGATCCTCGACTTGCACATTATGCCTCTCTGGCCGGCTGAGCGC
64 AGCATGCAGGGGGGATCGGGCCAATCCTCGACTTACACATTATGCCTCTCTGACCGGCTCAGCAC
* *
16641720 CCGCACGCCCGTTTCATGGGATGGCTTAG
129 CCGCACACCCGTTTCATGGGATGACTTAG
* * ** * * * * * * *
16641749 CCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCA-AATCGAGGGTTATGGCAGTAGGACCGGTA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAGACATGACCGAGGGTTACGGTAGTAGGATCGATA
* * * *
16641813 GCACGCAGTAGGGGATCGGGCCAATCCTCGACTTACGCATTATGCCTCT-TCGATCGGCTCAGCA
65 GCATGCAG-GGGGGATCGGGCCAATCCTCGACTTACACATTATGCCTCTCT-GACCGGCTCAGCA
* * *
16641877 CTCGCACACTCGTTTCGT-GGATTGACTTAG
128 CCCGCACACCCGTTTCATGGGA-TGACTTAG
* * *
16641907 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACATGGCCAAGGGTTACGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACATGACCGAGGGTTACGGTAGTAGGATCGATA
* * * * * * * ** * * **
16641972 GCATGCAGGGGGGATTGGG-TAGATCCCCGGCTTGCGCATTCTGCCTCTCCAACTGGCTGAGTGC
65 GCATGCAGGGGGGATCGGGCCA-ATCCTCGACTTACACATTATGCCTCTCTGACCGGCTCAGCAC
* * * * **
16642036 CCTGCACGCTCGTTCCATGGGTTGGTTTAG
129 CC-GCACACCCGTTTCATGGGATGACTTAG
16642066 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16642093 CATACGAAGT
Statistics
Matches: 262, Mismatches: 69, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
156 28 0.11
157 28 0.11
158 133 0.51
159 71 0.27
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACATGACCGAGGGTTACGGTAGTAGGATCGATAG
CATGCAGGGGGGATCGGGCCAATCCTCGACTTACACATTATGCCTCTCTGACCGGCTCAGCACCC
GCACACCCGTTTCATGGGATGACTTAG
Found at i:16642095 original size:26 final size:26
Alignment explanation
Indices: 16642066--16642118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16642056 GTTGGTTTAG
*
16642066 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
16642092 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16642118 G
1 G
16642119 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16642474 original size:26 final size:26
Alignment explanation
Indices: 16642445--16642497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16642435 GTTGACTTAG
* *
16642445 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16642471 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16642497 G
1 G
16642498 ATCGTTCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16649943 original size:157 final size:165
Alignment explanation
Indices: 16649757--16650128 Score: 451
Period size: 170 Copynumber: 2.3 Consensus size: 165
16649747 CGCACGCCTA
*
16649757 TTTCGTGGGTTGGCTTT-GGCATACGGAGTTCATTCCCTGTCTAAGATTGAACTAGA-CTGAGGG
1 TTTCGTGGGTTGGCTTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGAACCAGATC-GAGGG
*
16649820 -T-T-GT-G-A-CAGCAGGATCGACAGCACACAGGGGAGACCGGACCG-TCCCCGGCTTGCGCAT
65 TTGTAGTAGCAGCAGCAGGATCGACAGCACACAGGGGAGACCGGACCGATCCCCGACTTGCGCAT
*
16649878 TCTACCTCTCCGGCCAGCTGAGCACCCACACGCTCG
130 TCTACCTCTCCGGCCAACTGAGCACCCACACGCTCG
* *
16649914 TTTCGTGGGTTGG-TTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGT
1 TTTCGTGGGTTGGCTTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGAACCAGATCGAGGGT
* * **
16649978 TGCGGTAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTG
66 T---GTAGTA-G--CAGCAGCAGGATCGACAGCACACAGGGGAGACCGGACCGATCCCCGACTTG
* * * **
16650043 TGCATTTTGCCTCTCCGGCCAACTGAGCACCCGTACGCTCG
125 CGCATTCTACCTCTCCGGCCAACTGAGCACCCACACGCTCG
* * *
16650084 TTTCGTGGGTTGGCTTCA-GCATACGGAGTTCGTTCCATGTCTAAG
1 TTTCGTGGGTTGGCTTTAGGCATACGGAGTTCATTCCCTGTCTAAG
16650129 CCCCAGTCGG
Statistics
Matches: 181, Mismatches: 18, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
156 3 0.02
157 54 0.30
158 2 0.01
162 1 0.01
163 2 0.01
165 1 0.01
168 1 0.01
169 32 0.18
170 82 0.45
171 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (165 bp):
TTTCGTGGGTTGGCTTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGAACCAGATCGAGGGT
TGTAGTAGCAGCAGCAGGATCGACAGCACACAGGGGAGACCGGACCGATCCCCGACTTGCGCATT
CTACCTCTCCGGCCAACTGAGCACCCACACGCTCG
Found at i:16650108 original size:170 final size:170
Alignment explanation
Indices: 16649826--16650230 Score: 478
Period size: 170 Copynumber: 2.4 Consensus size: 170
16649816 AGGGTTGTGA
* * ** * *
16649826 CAGCAGGATCGACAGCACACAGGGGAGACCGGACCG-TCCCCGGCTTGCGCATTCTACCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
* *
16649890 GCCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCCA-GT
66 GCCAACTGAGCACCCACACGCTCGTTTCGTGGGTTGGTTCAGGCATACGGAGTTCATT-CCATGT
**** * *
16649954 CTAAG-ATTGGACCAGA-TCGAGGGTTGCGGTAGTAGGACCAG
130 CTAAGCCCCAG-CCAGACT-GAGGGTTGCGGCAGCAGGACCAG
* * *
16649995 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGTGCATTTTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
** *
16650060 GCCAACTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTCA-GCATACGGAGTTCGTTCCATGT
66 GCCAACTGAGCACCCACACGCTCGTTTCGTGGGTTGG-TTCAGGCATACGGAGTTCATTCCATGT
* * *
16650124 CTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCAG
130 CTAAGCCCCAGCCAGACTGAGGGTTGCGGCAGCAGGACCAG
* * * * * *
16650165 CAGCGGGATCGACAGCACGTAAGGAGGACCGGGTTGATCCCTGGCTTGCGCATTATGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
16650230 G
66 G
16650231 TCGACCTCTC
Statistics
Matches: 200, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
169 35 0.17
170 160 0.80
171 5 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.20
Consensus pattern (170 bp):
CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG
GCCAACTGAGCACCCACACGCTCGTTTCGTGGGTTGGTTCAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCCAGACTGAGGGTTGCGGCAGCAGGACCAG
Found at i:16650315 original size:26 final size:26
Alignment explanation
Indices: 16650285--16650337 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16650275 GTTGACTTAG
16650285 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
** * *
16650311 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
16650337 G
1 G
16650338 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:16650669 original size:158 final size:157
Alignment explanation
Indices: 16650311--16651759 Score: 1326
Period size: 158 Copynumber: 9.2 Consensus size: 157
16650301 CCCAGTCTAA
* * * * **
16650311 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCTA-GATCGAT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGC-AGGATCGGC
* * * ** * **
16650375 AGCACGCAGGGGGGACCGGGTCGAT-CCTCGGCTTGCGCATTCTG-CTCTTCGATCGATTGGGTA
64 AGCACGCAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* * *
16650438 TCCGTACGAC-CGTTTCGTGGGTTGGCTTAG
128 CCCGCACG-CTCGTTTCGTGGGTTGACTTAG
* * ** * * * *
16650468 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCATCCGGATCGAGGGTTGTGGCAGCAGGACCAGT
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAGAT-CGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * **
16650532 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGTAC
64 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* * * * *
16650597 CTGTATGCTCGTTTTGTGGGTTGACTTAT
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * **
16650626 GCATACGAAGTTGATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * ** *
16650691 GCACGCAGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* *
16650756 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * ** *
16650784 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCTGATTGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC-GG
* * * * * *
16650847 TAGCACGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCGG-CTAGCTCAG
63 CAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTC-GGCTGAG
* *
16650910 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
16650942 GCATACAGAATTCATTTCCAGTCTAAGATCAGA-CTGGACTGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * *
16651006 AGCACGCAAGGGGGATCGGGCAGATCCCTGGCTTACGCATTCTACCTCTTTGGTCGGCTGAGTGC
64 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* * * * *
16651071 CTGCACGCCCATTTCGTTGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * *
16651100 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAG-GATCGG
* * ** * * *
16651163 AAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTTCGGTCGGCTTAGC
63 CAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
* * *
16651228 ACCTGCATGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
16651259 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * **
16651324 GCATGCA-GGGGGACCGGGTCAAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 GCACGCAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* * *
16651387 CCGCACGCCCGTTTCTTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * *
16651416 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT-GGATCGATGGTTGTGGCAGCAGGATTGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* ** * * * * *
16651480 AGCATGCAGAGGCAGATCGGGCCGATCCCTGGCTTGCGCATTTTGCCTCTTCGGCCGTCTCAGTG
64 AGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* *
16651545 CCCGCACGCTCGTTTCGTAGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *
16651575 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * *
16651640 GCACGCAGGGGGGATGGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGTGCC
65 GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
** *
16651705 CGCACGCTCGTTTCACGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
16651733 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16651760 CATACGGAGT
Statistics
Matches: 1034, Mismatches: 222, Indels: 71
0.78 0.17 0.05
Matches are distributed among these distances:
156 9 0.01
157 251 0.24
158 472 0.46
159 294 0.28
160 8 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCAG
CACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16650925 original size:316 final size:316
Alignment explanation
Indices: 16650319--16651760 Score: 1769
Period size: 316 Copynumber: 4.6 Consensus size: 316
16650309 AAGCATATGG
* * *
16650319 AGTTCATTC-CTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCTA-GATCGATAGCACGC
1 AGTTCATTCTC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGC-AGGATCGACAGCACGC
* * * * * ** *
16650382 AGGGGGGACCGGGTCGAT-CCTCGGCTTGCGCATTCTG-CTCTTCGATCGATTGGGTATCCGTAC
64 AGGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCAC
*
16650445 GACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-TCCGGATCG
128 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-CGGATCG
* * * *
16650509 AGGGTTGTGGCAGCAGGACCAGTAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGTGCATTA
192 AGGGTTGTGGCAGCAGGACCGGTAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTA
* * * * *
16650574 TGCCTCTTCGGTCGGCTCAGTACCTGTATGCTCGTTTTGTGGGTTGACTTATGCATACGA
257 TGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA
* * ** * *
16650634 AGTTGATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCAACAGCACGCAG
1 AGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* * *
16650699 GGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCCCGCACGCC
66 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCC
* *
16650764 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCTGATTGAGGG
131 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGG
* *
16650829 TTGTGGCAGCGGGACTGGTAGCACGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
196 TTGTGGCAGCAGGACCGGTAGCACGCAG-AGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
* * *
16650894 CTC-TCGG-CTAGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACAGA
260 CTCTTCGGTC-GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATAC-GA
* * *
16650951 A-TTCATT-TCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
1 AGTTCATTCT-CAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * ** * * *
16651014 AGGGGGATCGGGCAGATCCCTGGCTTACGCATTCTACCTCTTTGGTCGGCTGAGTGCCTGCACGC
65 GGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGC
* *
16651079 CCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGG
130 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGG
* * * *
16651144 GTTGTGGCAGC-GAGACCGGAAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGTGCATTAT
195 GTTGTGGCAGCAG-GACCGGTAGCACGCAGA-GGGGATCGGGCCGATCCCCGGCTTGCGCATTAT
* * * * *
16651208 GCCTCTTCGGTCGGCTTAGCACCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGG
258 GCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA
* * * * *
16651267 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCATGCA-
1 AGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* * * * * *
16651331 GGGGGACCGGGTCAAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
66 GGGGGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGC
* * *
16651395 CCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGGATCGAT
130 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGATCGAG
** * * * * *
16651459 GGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGCAGATCGGGCCGATCCCTGGCTTGCGCATTTT
194 GGTTGTGGCAGCAGGACCGGTAGCACGCAGAGG-GGATCGGGCCGATCCCCGGCTTGCGCATTAT
* * ** * *
16651524 GCCTCTTCGGCCGTCTCAGTGCCCGCACGCTCGTTTCGTAGGTTGACTTATGCATACGG
258 GCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA
** * *
16651583 AGTTCATTC-CTAGTCTAAGATCAGACCAAACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCA
1 AGTTCATTCTC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * *
16651647 GGGGGGATGGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGTGCCCGCACGC
65 GGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGC
* ** *
16651712 TCGTTTCACGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16651761 ATACGGAGTT
Statistics
Matches: 970, Mismatches: 135, Indels: 42
0.85 0.12 0.04
Matches are distributed among these distances:
314 1 0.00
315 93 0.10
316 641 0.66
317 232 0.24
318 3 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (316 bp):
AGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGTGCCCGCACGCC
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGG
TTGTGGCAGCAGGACCGGTAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCC
TCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA
Found at i:16651388 original size:474 final size:470
Alignment explanation
Indices: 16650311--16651759 Score: 1585
Period size: 474 Copynumber: 3.1 Consensus size: 470
16650301 CCCAGTCTAA
* * * *
16650311 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCTA-GATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGC-AGGATCGA
* ** * **
16650374 TAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTG-CTCTTCGATCGATTGGGTA
64 TAGCACGCA-GGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTC-TCGACCGGCTGAGCG
* * *
16650438 TCCGTACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCC
127 CCCGTACG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCT
* * * * *
16650503 GGATCGAGGGTTGTGGCAGCAGGACCAGTAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGT
190 GGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGC
* * * * *
16650568 GCATTATGCCTCTTCGGTCGGCTCAGTACCTGTATGCTCGTTTTGTGGGTTGACTTATGCATACG
255 GCATTATGCCTCTTCGGTCGGCTCAGTGCCTGCACGCTCGTTTCGTAGGTTGACTTATGCATACG
* * ** *
16650633 AAGTTGATTCTCA-GTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATC-AACAGCACG
320 GAGTTCATTC-CATGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGA-AGCACG
* **
16650696 CAGGGGGGATCGGGCCGAT-CCCTGACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCCCGCA
383 CAGGGGGGATCGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCA
*
16650760 CGCCCGTTTCGTGGGTTGGCTTAG
447 CGCTCGTTTCGTGGGTTGGCTTAG
* ** * * ** * *
16650784 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCTGATTGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * * ** *
16650847 TAGCACGCAGAAGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCGGCTAGCTCAGCG
64 TAGCACGCAG--GGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCGACCGGCTGAGCG
* * ** * **
16650912 CCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACAGAATTCATTTCCA-GTCTAAGATCAGAC
127 CCCGTACGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA-TTCCATGTCTAAGCCCAG-C
*
16650976 TGGA-CTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCAGATCCCTGGCTT
189 TGGATC-GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTT
* * * * * * * * * *
16651040 ACGCATTCTACCTCTTTGGTCGGCTGAGTGCCTGCACGCCCATTTCGTTGGTTGGCTTAGGCATA
253 GCGCATTATGCCTCTTCGGTCGGCTCAGTGCCTGCACGCTCGTTTCGTAGGTTGACTTATGCATA
* ** * * *
16651105 GGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGC-GAGACCGGAAGCA
318 CGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGTGGTAGCAG-GATCGGAAGCA
* * * * * * * *
16651168 CGCAGAGGGGGACCGGGCCGATCCCCAGCTTGTGCATTATGCCTCTTCGGTCGGCTTAGCACCTG
381 CGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCG
* *
16651233 CATGCTCGTTTCGTGGGTTGACTTAG
445 CACGCTCGTTTCGTGGGTTGGCTTAG
* * *
16651259 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAT
* *
16651323 AGCATGCAGGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 AGCACGCAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCT-CGACCGGCTGAGCGCC
* *
16651388 CGCACGCCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGG
129 CGTACG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGCTGG
* * * **
16651453 ATCGATGGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGCAGATCGGGCCGATCCCTGGCTTGCG
192 ATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA-AGGGGGATCGGGCCGATCCCTGGCTTGCG
* * * *
16651518 CATTTTGCCTCTTCGGCCGTCTCAGTGCCCGCACGCTCGTTTCGTAGGTTGACTTATGCATACGG
256 CATTATGCCTCTTCGGTCGGCTCAGTGCCTGCACGCTCGTTTCGTAGGTTGACTTATGCATACGG
* ** *
16651583 AGTTCATTCC-TAGTCTAAGATCAGACCAAACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCA
321 AGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGAAGCACGCA
* * * *
16651647 GGGGGGATGGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGTGCCCGCACGC
385 GGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC
**
16651712 TCGTTTCACGGGTTGGCTTAG
450 TCGTTTCGTGGGTTGGCTTAG
16651733 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16651760 CATACGGAGT
Statistics
Matches: 790, Mismatches: 156, Indels: 59
0.79 0.16 0.06
Matches are distributed among these distances:
472 2 0.00
473 101 0.13
474 420 0.53
475 258 0.33
476 9 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (470 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCGACCGGCTGAGCGCCCG
TACGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCTGGATCG
AGGGTTGTGGCAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTA
TGCCTCTTCGGTCGGCTCAGTGCCTGCACGCTCGTTTCGTAGGTTGACTTATGCATACGGAGTTC
ATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCGGAAGCACGCAGGGGGG
ATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGGCTTAG
Found at i:16651762 original size:26 final size:26
Alignment explanation
Indices: 16651733--16651785 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16651723 GTTGGCTTAG
16651733 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16651759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16651785 G
1 G
16651786 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16652501 original size:26 final size:26
Alignment explanation
Indices: 16652465--16652515 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16652455 TGACTTAGGT
16652465 ATACGAAGTTCA-TCCCTAGTCTAAGC
1 ATACGAAGTTCATTCCC-AGTCTAAGC
*
16652491 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
16652516 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:16652995 original size:26 final size:26
Alignment explanation
Indices: 16652965--16653014 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16652955 GGCTTAGGCG
16652965 TACAGAGTTCATTCC-ATGTCTAAGCA
1 TACAGAGTTCATTCCTA-GTCTAAGCA
16652991 TACAGAGTTCATTCCTAGTCTAAG
1 TACAGAGTTCATTCCTAGTCTAAG
16653015 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (26 bp):
TACAGAGTTCATTCCTAGTCTAAGCA
Found at i:16653367 original size:26 final size:26
Alignment explanation
Indices: 16653330--16653382 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16653320 GTTGACATAG
*
16653330 GCATACATAGTTTATCCCCAATCTAA
1 GCATACATAGTTCATCCCCAATCTAA
* *
16653356 GCATACGA-AGTTCATTCCCAGTCTAA
1 GCATAC-ATAGTTCATCCCCAATCTAA
16653382 G
1 G
16653383 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACATAGTTCATCCCCAATCTAA
Found at i:16654582 original size:26 final size:26
Alignment explanation
Indices: 16654553--16654605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16654543 GTTGACTTAG
*
16654553 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATAAGGAGTTCAACCCCAGTCTAA
**
16654579 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCAACCCCAGTCTAA
16654605 G
1 G
16654606 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATAAGGAGTTCAACCCCAGTCTAA
Found at i:16654902 original size:32 final size:32
Alignment explanation
Indices: 16654837--16654903 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
16654827 CTTAGTGCCT
* * *
16654837 GCACGCTTATTTCATAGGTCGGCTGAGCGTCC
1 GCACGCCTATTTCATAGGTCGACTGAGCATCC
* * *
16654869 GCACGCCTATTTCGTAGGTCGATTGAGTATCC
1 GCACGCCTATTTCATAGGTCGACTGAGCATCC
16654901 GCA
1 GCA
16654904 TGCTTGTTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.28
Consensus pattern (32 bp):
GCACGCCTATTTCATAGGTCGACTGAGCATCC
Found at i:16654958 original size:26 final size:26
Alignment explanation
Indices: 16654928--16654980 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16654918 GTTGACTTAG
*
16654928 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGACTTCATTCCC-AGTCTAA
*
16654954 GCATACGTACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
16654980 G
1 G
16654981 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:16656366 original size:159 final size:159
Alignment explanation
Indices: 16655679--16656374 Score: 587
Period size: 159 Copynumber: 4.4 Consensus size: 159
16655669 GTCTAAGCAA
* * * **
16655679 ACGGAGTTCATTCCCA-GTCTAAGATCTA-ACCGGATCAAGGGTTGCGGCAGCAGGATCGGCAGC
1 ACGGAGTTCATT-CCATGTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGC
* * * *
16655742 ACGTAGG-GGGGATCGGGCCGATCCCTGTCTTGCACATTCTTCCTCTCCGACTGGCTGAGCACCC
64 ACGCAGGAGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGTACCC
*
16655806 GCACG-TCCGTTTCATGGGTTGGCTTAGGCAT
129 GCACGCT-CGTTTCGTGGGTTGGCTTAGGCAT
* ** * * * ***
16655837 AGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCAAGATCGGCGGCA
1 ACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCA
* * * * * * * * *
16655901 CGCA-GAGGGGGATCGGGCCGATCCCCGACTTGCTCATTATGCCTCTCTG-GTCGGGTCAGTGCC
65 CGCAGGA-GGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACT-GGCTGAGTACC
*
16655964 CGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * *
16655996 ACGGAGTTCATTTCC-TATCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGCA
1 ACGGAGTTCA-TTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCA
* * * * * * * * *
16656060 CGTAGG-GTGGGA-CTGGGCTGGTCCTTAGCTTGCACATTCCGCCTCTCCGACCGACTGAGTACT
65 CGCAGGAG-GGGATC-GGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGTACC
*** *
16656123 CGCACGCTCGTTTCGTTCCATT--C-TAAGCAT
128 CGCACGCTCGTTTCG-TGGGTTGGCTTAGGCAT
* * * * * *
16656153 ACGAAGTTCATTCCCA-GTCTAAGATCGGATCAGACTGAAGGTTGCGGCAGCAGGATTGATAGCA
1 ACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCA
** * * * * * * * *
16656217 TACAGGAGGGGATCGGGACAATCCCTGGCTTACGCATTCTACCTCTCCGACTGGCTAAGTGCTCG
65 CGCAGGAGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGTACCCG
*
16656282 CACACTCGTTTCGTGGGTTGGCTTAGGCAT
130 CACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
16656312 ACGGAGTTCATTCCATGTCTAAGCCTCAG-TCGGACCGAGGGTTGTGGCAGCAGGA-CTGATAGC
1 ACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATC-GATAGC
16656375 GGGATTGGCG
Statistics
Matches: 420, Mismatches: 95, Indels: 45
0.75 0.17 0.08
Matches are distributed among these distances:
156 5 0.01
157 117 0.28
158 65 0.15
159 221 0.53
160 12 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
ACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCAC
GCAGGAGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGTACCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCAT
Found at i:16656523 original size:26 final size:26
Alignment explanation
Indices: 16656492--16656544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16656482 GTTGACTTAG
*
16656492 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16656518 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16656544 G
1 G
16656545 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16656918 original size:354 final size:355
Alignment explanation
Indices: 16656144--16657152 Score: 1127
Period size: 356 Copynumber: 2.8 Consensus size: 355
16656134 TTCGTTCCAT
* * *
16656144 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAAGGTTGCGGCAGCAGGA
1 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACT-AGACTGAGGGTTGCGACAGCAGGA
* * * * * *
16656208 TTGATAGCATACAGGAGGGGATCGGGACAATCCCTGGCTTACGCATTCTACCTCTCCGACTGGCT
65 TCGATAGCACACAGGA-GGGACCGGGACGATCCCCGACTTACGCATTCTACCTCTCCGACTGGCT
* ** * * * * * *
16656273 AAGTGCTCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCT
129 GAGCACCCTCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * *
16656338 CAGTCGGACCGAGGGTTGTGGCAGCAGGACTGATAGCGGGATTGGCGAGACGTAGATTGGGATCG
194 CAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGC---A--CGC-AGA-G--G---GGGATC-
* * * * *
16656403 GGTTGATCC-CTGGCTTGTGCATTAC-GCCTCTCCGACCGGCCTCTCTAGCCGGTTGAGCACCCA
246 GGTCGATCCTC-AGCTTGTGCATT-CTGCCTCTCCGACCGGCCTCTCCAGCCGGCTAAGCACCCA
* * * * *
16656466 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
309 CACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATACCCAG
* * * *
16656513 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGCGATAACAGGA
1 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA-ACTAGACTGAGGGTTGCGACAGCAGGA
* * *
16656577 TCGGTAGCACACA-GAGGGACCGGG-TGATCCCCGACTTACGCACTCTACCTCTCCGGA-TGGCT
65 TCGATAGCACACAGGAGGGACCGGGACGATCCCCGACTTACGCATTCTACCTCTCC-GACTGGCT
*
16656639 GAGCACCCTCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
129 GAGCACCCTCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* *
16656704 CAACCGGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGATCGGTCGAATCCTCA
194 CAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGATCGGTCG-ATCCTCA
* * * * * * *
16656769 GCTTGTGCATTCTACCTCTCTGGCCGGCCTCTCCGGCTGGCTAAGCGCCCGCACGCTCATTTCGT
258 GCTTGTGCATTCTGCCTCTCCGACCGGCCTCTCCAGCCGGCTAAGCACCCACACGCTCATTTCGT
*
16656834 GGGTTAACTTAGGCATACAGAGTTCATACCCTG
323 GGGTTAACTTAGGCATACAGAGTTCATACCCAG
* * * *
16656867 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGATTGAGGGTTGCGACAGCAGGAT
1 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTGCGACAGCAGGAT
* * * * * *
16656932 CGACAGCACCCAGGGGGGACCGGGCCGATCCCC-AGCTTACGCATTCTACCTCTCTGACTGGTTG
66 CGATAGCACACAGGAGGGACCGGGACGATCCCCGA-CTTACGCATTCTACCTCTCCGACTGGCTG
* *
16656996 AGCA-CCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGCCC
130 AGCACCCT-CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * ** * *
16657060 CAGCCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGTTGAGGGGGATCGAGCCGATCCTTA
194 CAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGATCG-GTCGATCCTCA
*
16657125 GCTTGTGCATTCTGCCTCTTCGACCGGC
258 GCTTGTGCATTCTGCCTCTCCGACCGGC
16657153 TAATCACCCG
Statistics
Matches: 546, Mismatches: 81, Indels: 39
0.82 0.12 0.06
Matches are distributed among these distances:
353 5 0.01
354 154 0.28
355 18 0.03
356 164 0.30
357 4 0.01
359 1 0.00
360 3 0.01
361 2 0.00
363 1 0.00
366 117 0.21
367 10 0.02
368 2 0.00
369 65 0.12
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTAGACTGAGGGTTGCGACAGCAGGAT
CGATAGCACACAGGAGGGACCGGGACGATCCCCGACTTACGCATTCTACCTCTCCGACTGGCTGA
GCACCCTCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GCCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGATCGGTCGATCCTCAGCT
TGTGCATTCTGCCTCTCCGACCGGCCTCTCCAGCCGGCTAAGCACCCACACGCTCATTTCGTGGG
TTAACTTAGGCATACAGAGTTCATACCCAG
Found at i:16657845 original size:26 final size:26
Alignment explanation
Indices: 16657816--16657868 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16657806 GTGGACTTAG
*
16657816 GCATACGGAGCTCA-TCCCTAGTCTAA
1 GCATACGAAGCTCATTCCC-AGTCTAA
*
16657842 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
16657868 G
1 G
16657869 AACAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:16658183 original size:158 final size:157
Alignment explanation
Indices: 16657842--16658172 Score: 412
Period size: 158 Copynumber: 2.1 Consensus size: 157
16657832 CCTAGTCTAA
* * * * * *
16657842 GCATACGAAGTTCATTCCCAGTCTAAGAACAGACTGGACTGAGGGTTACGGTAGCAGGATCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTACGGCAGCAAGATCAGCA
* *** * **
16657907 GCACGCAGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTACCTCTCCGAGTGGCTGAGCACCC
66 GCACGCAGGGGGACCGAGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGGCTGAGCACCC
* * *
16657972 GTATGCTCATTTCGTGGGTTGACTTAG
131 GCACGCTCATTTCATGGGTTGACTTAG
* *
16657999 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAAGATC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTACGGCAGCAAGATCAG-C
** * * *
16658063 AGCACGCAGGAGGGACCGAGTTGATCCCCAGCTTAGGCATTATGCCTCTCCGACCGGCTGAGTAC
65 AGCACGCAGG-GGGACCGAGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGGCTGAGCAC
* *
16658128 CCGCACGCTCATTTTATGGGTTGGCTTAG
129 CCGCACGCTCATTTCATGGGTTGACTTAG
16658157 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
16658173 TCATGTCTAA
Statistics
Matches: 146, Mismatches: 26, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
156 1 0.01
157 64 0.44
158 81 0.55
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTACGGCAGCAAGATCAGCA
GCACGCAGGGGGACCGAGCCGATCCCCAGCTTACGCATTATACCTCTCCGACCGGCTGAGCACCC
GCACGCTCATTTCATGGGTTGACTTAG
Found at i:16658248 original size:12 final size:12
Alignment explanation
Indices: 16658231--16658262 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
16658221 CCGAGGGTTA
16658231 CAGTAGCAGGAC
1 CAGTAGCAGGAC
16658243 CAGTAGCAGGAC
1 CAGTAGCAGGAC
*
16658255 CAGCAGCA
1 CAGTAGCA
16658263 CGCAGGGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.06
Consensus pattern (12 bp):
CAGTAGCAGGAC
Found at i:16658751 original size:26 final size:26
Alignment explanation
Indices: 16658721--16658773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16658711 GTTGACTTAG
*
16658721 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16658747 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16658773 G
1 G
16658774 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16659137 original size:159 final size:156
Alignment explanation
Indices: 16658754--16659139 Score: 368
Period size: 159 Copynumber: 2.4 Consensus size: 156
16658744 TAAGCATACA
* *
16658754 GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGAC-CGACTGAGGGTTGTGGCAGCAGGATCGGTAGCATGCA
** * * * * * * * * * *
16658819 G-GGGGGACCGGGCTGATCCCGGCTTGTGTATTCTACCTCTCCGATCGGCTGAGCGGTAGCACGT
65 GAGGGGGACCGACCCGATCCCGGCTTGCGCATTATACCTCTCCAACCGGCTCAACGCTAGAACGT
* ** *
16658883 CCGTTTTGTGGGTGGCTTAGGCATAGG
130 CCATTTCATGGGTGACTTAGGCATAGG
* ** ** * **
16658910 GAGTTCATT-CTATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAGTGGGACCGGTAGCACC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCG-ACTGAGGGTTGTGGCAGCAGGATCGGTAGCATG
* *
16658973 CAGAGGGGGACCGACCCGGTCCTCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAACGCCT-GA
63 CAGAGGGGGACCGACCCGATCC-CGGCTTGCGCATTATACCTCTCCAACCGGCTCAACG-CTAGA
*
16659037 ACG-CTCATTTCATGGGTTGACTTAGGCATATG
126 ACGTC-CATTTCATGGG-TGACTTAGGCATAGG
* * *
16659069 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGTATCGATAGCATGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGTGGCAGCAGGATCGGTAGCATGCA
16659134 GAGGGG
65 GAGGGG
16659140 ACCAGGCTGA
Statistics
Matches: 179, Mismatches: 40, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
155 3 0.02
156 47 0.26
157 18 0.10
158 43 0.24
159 65 0.36
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTGTGGCAGCAGGATCGGTAGCATGCAG
AGGGGGACCGACCCGATCCCGGCTTGCGCATTATACCTCTCCAACCGGCTCAACGCTAGAACGTC
CATTTCATGGGTGACTTAGGCATAGG
Found at i:16659250 original size:26 final size:26
Alignment explanation
Indices: 16659220--16659271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16659210 CTTGGCTTAG
16659220 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16659246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16659272 AATCTGACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16659649 original size:26 final size:26
Alignment explanation
Indices: 16659601--16659653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16659591 GTTGACTTAG
*
16659601 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
16659627 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
16659653 G
1 G
16659654 ATCCGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:16660177 original size:26 final size:26
Alignment explanation
Indices: 16660127--16660179 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16660117 GTTGACTTAG
*
16660127 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
16660153 GCATACGGCGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16660179 G
1 G
16660180 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16660375 original size:26 final size:26
Alignment explanation
Indices: 16660325--16660375 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16660315 TGGCTTAGGT
*
16660325 ATACGGAGTTCATTCCATGTTTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
16660351 ATACGGAGTTCATTCTCA-GTCTAAG
1 ATACGGAGTTCATTC-CATGTCTAAG
16660376 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGC
Found at i:16666058 original size:26 final size:26
Alignment explanation
Indices: 16666022--16666074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16666012 GTTGGCTTAG
16666022 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16666048 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16666074 G
1 G
16666075 ACTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16666440 original size:26 final size:26
Alignment explanation
Indices: 16666403--16666455 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16666393 GTTGACTTAG
16666403 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16666429 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
16666455 G
1 G
16666456 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16666938 original size:26 final size:26
Alignment explanation
Indices: 16666902--16666954 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16666892 GTTGGCTTAG
16666902 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16666928 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16666954 G
1 G
16666955 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16667663 original size:26 final size:26
Alignment explanation
Indices: 16667626--16667678 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16667616 GTTGACTTAG
16667626 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16667652 GCATACTG-AGTTCATTCCCAGTCTAA
1 GCATAC-GAAGTTCATCCCCAGTCTAA
16667678 G
1 G
16667679 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16668848 original size:26 final size:26
Alignment explanation
Indices: 16668811--16668863 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16668801 GTTGACTTCG
16668811 GCATACGAAGTTCA-TCGCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
16668837 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16668863 G
1 G
16668864 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16669139 original size:159 final size:160
Alignment explanation
Indices: 16668892--16670131 Score: 1251
Period size: 159 Copynumber: 7.8 Consensus size: 160
16668882 TTGCGGTAGT
* * * * * * *
16668892 AGGATTGACAGCACGCAG-GGGGGACCGGGCCGATCCCTGACTTGCACATTTTGCCTCTCCGATC
1 AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* * * *
16668956 GGCTGAGCGCCTGTACGC-CTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 GGCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTA
* *
16669020 AGCCCCAGCT-GGACCTAGGGTTGTGGCAGT
130 AGCCCCAGCTCGGACCGAGGGTTGTGGCAGC
* * * * * *
16669050 GGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATC
1 AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* ** * * *
16669115 GGCTCAGCGTTCGCACGCTCATTTCGTGGGTTGACTTATGCCTATGGAGTTCATTCCCA-GTCTA
66 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTA
*** * * ** **
16669179 A-TATCAGATAGGATTGAGGGTTGCAGCAGC
130 AGCCCCAGCTCGGACCGAGGGTTGTGGCAGC
* ** * * * * * * *
16669209 AGGATCGATAGCACGCAG-GGGACATCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCTGTC
1 AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* * * *
16669273 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
16669338 GCCCCAG-TCGGACCGAGGGTTGTGGCAGC
131 GCCCCAGCTCGGACCGAGGGTTGTGGCAGC
* * * ** *
16669367 GGGACCGGCAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTT
1 AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* ** *
16669432 GGCTCAGCGCCTACACGCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
66 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTA
** * * *
16669496 AG-ATCGGATCAGACCGAGGGTTGTGGCAGTC
130 AGCCCCAGCTCGGACCGAGGGTTGTGGCAG-C
* *
16669527 -GAATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC
1 AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* ** *
16669590 GGCTGAGCACCCGCACGCTCATTTCGT-GGTTGGGTTAGGCATATGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
16669654 GCCCCAG-TCGGACCGAGGGTTGTGGCAGC
131 GCCCCAGCTCGGACCGAGGGTTGTGGCAGC
* * * * * *
16669683 GGGA-CTGGCAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGTGCATTATGCCTC-TCTGG
1 AGGATC-GACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTC-GG
* * * * * * *
16669746 TCGGCTTAGCACCTGCACACTCATTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
64 TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
16669811 AAGCCCCAGC-CGGACCGAGGGTTGTGGCAGC
129 AAGCCCCAGCTCGGACCGAGGGTTGTGGCAGC
* * * * * ** *
16669842 AGGATCGGCAACACGCAAAGGGGGACCGAGTCGATCGTCGGCTTGCGCATTATGCCTCTTTGGTC
1 AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* * ** * * *
16669907 AGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTA
66 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTA
** *
16669971 AG-ATCAGAC-CAGACCGAGGGTTGTGGCAGC
130 AGCCCCAG-CTCGGACCGAGGGTTGTGGCAGC
* * * * * *
16670001 AGGATCGACAGCACGCAG-GGGGGACCGGGACGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCC
1 AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
* * * * * * *
16670065 GACTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGAATTTCATTCCACGTCTAA
66 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
16670130 GC
131 GC
16670132 ATACGGAGTT
Statistics
Matches: 889, Mismatches: 169, Indels: 47
0.80 0.15 0.04
Matches are distributed among these distances:
156 5 0.01
157 72 0.08
158 356 0.40
159 443 0.50
160 13 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
AGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCTCGGACCGAGGGTTGTGGCAGC
Found at i:16669419 original size:317 final size:317
Alignment explanation
Indices: 16668837--16670130 Score: 1387
Period size: 317 Copynumber: 4.1 Consensus size: 317
16668827 GCCAGTCTAA
* * ** * * * *
16668837 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAAGGTTGCGGTAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGACA
** * * *
16668902 GCACGCAGGGGGGACCGGGCCGATCC-CTGACTTGCACATTTTGCCTCTCC-GATCGGCTGAGCG
66 GCACGCAGGGGACACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCTG-TCGGCTGAGCG
* * *
16668965 CCTGTACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * *
16669029 TGGACCTAGGGTTGTGGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCCCGGCTT
194 -GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTT
* * * *
16669094 GCGCATTATGCCTCTTCGATCGGCTCAGCG-TTCGCACGCTCATTTCGTGGGTTGACTTAT
258 GCGCATTATGCCTCTTCGGTCGGCTCAGCGCCT-GCACGCTCATTTAGTGGGTTGACTTAG
* * * * ** * *
16669154 GCCTATGGAGTTCATTCCCAGTCTAATATCAGATAGGATTGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
16669219 GCACGCAGGGGACATCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCTGTCGGCTGAGCGCC
66 GCACGCAGGGGACACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCGCC
*
16669284 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* *
16669349 ACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTGCG
196 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCG
* *
16669414 CATTATGCCTCTTCGGTTGGCTCAGCGCCTACACGCTCATTTAGTGGGTTGACTTAG
261 CATTATGCCTCTTCGGTCGGCTCAGCGCCTGCACGCTCATTTAGTGGGTTGACTTAG
* * *
16669471 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA-GACCGAGGGTTGTGGCAGTC-GAATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCGGCAG-CAGGATCGA
** * * * *
16669534 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCA
64 CAGCACGCAGGGGACACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCG
* * *
16669599 CCCGCACGCTCATTTCGT-GGTTGGGTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * *
16669663 GGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTG
194 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTG
* * * * *
16669728 TGCATTATGCCTC-TCTGGTCGGCTTAGCACCTGCACACTCATTTAGTGGGTTGGCTTAG
259 CGCATTATGCCTCTTC-GGTCGGCTCAGCGCCTGCACGCTCATTTAGTGGGTTGACTTAG
* ** * * *
16669787 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * *
16669850 CAACACGCAAAGGGG-GACCGAGTCGATCGTCGGCTTGCGCATTATGCCTCT-TTGGTCAGCTCA
64 CAGCACGC--AGGGGACACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCT-GTCGGCTGA
*** * * ** * **
16669913 GCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAAG-ATC
126 GCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCC
* * * * * * *
16669976 AGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGACGATCCCTG
190 AG-TCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCG
* * * * * * * * * * *
16670040 GCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAG
254 GCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCTGCACGCTCATTTAGTGGGTTGACTTAG
* *
16670104 GCATACGAATTTCATT-CCACGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16670131 CATACGGAGT
Statistics
Matches: 837, Mismatches: 122, Indels: 36
0.84 0.12 0.04
Matches are distributed among these distances:
315 7 0.01
316 206 0.25
317 547 0.65
318 74 0.09
319 3 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGACACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCGCC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCG
CATTATGCCTCTTCGGTCGGCTCAGCGCCTGCACGCTCATTTAGTGGGTTGACTTAG
Found at i:16669741 original size:475 final size:475
Alignment explanation
Indices: 16668900--16670132 Score: 1482
Period size: 475 Copynumber: 2.6 Consensus size: 475
16668890 GTAGGATTGA
* * * * * * *
16668900 CAGCACGCAG-GGGGGACCGGGCCGATCCCTGACTTGCACATTTTGCCTCTCCGATCGGCTGAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
* * * **
16668964 GCCTGTACGC-CTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA
66 GCCTGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCA
** * * * * * *
16669027 G-CTGGACCTAGGGTTGTGGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCCCGG
128 GACCAGACCGAGGGTTGTGGCAGTCGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGG
* * * *** * *
16669091 CTTGCGCATTATGCCTCTTCGATCGGCTCAGCGTTCGCACGCTCATTTCGTGGGTTGACTTATGC
192 CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGC
* * * ** *
16669156 CTATGGAGTTCATTCCCAGTCTAA-TATCAGATAGGATTGAGGGTTGCAGCAGCAGGATCGATAG
257 ATATGGAGTTCATT-CCAGTCTAAGCACCAGATAGGACCGAGGGTTGCAGCAGCAGGATCGACAG
* *
16669220 CACGCAGGGGACATCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCCT-GTCGGCTGAGCGCC
321 CACGCAGGGGACATCGGGCTGATCCTCGGCTTGTGCATTATGCCTCT-CTGGTCGGCTGAGCACC
* * * *
16669284 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
385 CGCACACCCATTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
*
16669349 ACCGAGGGTTGTGGCAGCGGGACCGG
450 ACCGAGGGTTGTGGCAGCAGGACCGG
** *
16669375 CAGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTTGGCTCAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
* * * *
16669440 GCCTACACGCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
66 GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*
16669505 CAGACCGAGGGTTGTGGCAGTCGAATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
131 CAGACCGAGGGTTGTGGCAGTCGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
**
16669570 CGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCGT-GGTTGGGTTAGGCATAT
196 CGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATAT
* * ** * *
16669634 GGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCAC
261 GGAGTTCATTCCA-GTCTAAGCACCAGATAGGACCGAGGGTTGCAGCAGCAGGATC-GACAGCAC
** * *
16669697 GCAGAGGGGGATCGGG-TCGATCC-CTGGCTTGTGCATTATGCCTCTCTGGTCGGCTTAGCACCT
324 GCAG-GGGACATCGGGCT-GATCCTC-GGCTTGTGCATTATGCCTCTCTGGTCGGCTGAGCACCC
*
16669760 GCACACTCATTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
386 GCACACCCATTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
*
16669825 CCGAGGGTTGTGGCAGCAGGATCGG
451 CCGAGGGTTGTGGCAGCAGGACCGG
* * * * ** * *
16669850 CAACACGCAAAGGGGGACCGAGTCGATCGTCGGCTTGCGCATTATGCCTCTTTGGTCAGCTCAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
* ** * * *
16669915 GCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAATCTAAGATCAGAC
66 GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* *
16669980 CAGACCGAGGGTTGTGGCAG-CAGGATCGACAGCACGCAGGGGGGACCGGGACGATCCCTGGCTT
131 CAGACCGAGGGTTGTGGCAGTC-GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT
* * * * *
16670044 GTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATA
195 GCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATA
* * *
16670109 CGAATTTCATTCCACGTCTAAGCA
260 TGGAGTTCATTCCA-GTCTAAGCA
16670133 TACGGAGTTC
Statistics
Matches: 647, Mismatches: 98, Indels: 25
0.84 0.13 0.03
Matches are distributed among these distances:
473 4 0.01
474 64 0.10
475 420 0.65
476 155 0.24
477 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (475 bp):
CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGTGGCAGTCGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTG
CGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATAT
GGAGTTCATTCCAGTCTAAGCACCAGATAGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGC
AGGGGACATCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCTGGTCGGCTGAGCACCCGCACA
CCCATTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
GGTTGTGGCAGCAGGACCGG
Found at i:16670133 original size:26 final size:26
Alignment explanation
Indices: 16670104--16670156 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16670094 GTTGACTTAG
*
16670104 GCATACGAATTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16670130 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16670156 G
1 G
16670157 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16670873 original size:26 final size:26
Alignment explanation
Indices: 16670826--16670876 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16670816 TTGACTTAGG
* *
16670826 CATACGGAGTTCATCCGTAGTCTAAA
1 CATACGAAGTTCATCCGCAGTCTAAA
16670852 CATACGAAGTTCATTCC-CAGTCTAA
1 CATACGAAGTTCA-TCCGCAGTCTAA
16670877 GATCAGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCGCAGTCTAAA
Found at i:16671369 original size:26 final size:26
Alignment explanation
Indices: 16671339--16671391 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16671329 GTTAACTTAG
*
16671339 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16671365 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16671391 G
1 G
16671392 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16671839 original size:158 final size:158
Alignment explanation
Indices: 16671365--16671866 Score: 591
Period size: 158 Copynumber: 3.2 Consensus size: 158
16671355 CCCAGTCTAA
* * * * *
16671365 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
16671430 GCACGGAGGGGGGATCGAGCTGATCCCCGGGTTGCGCATTCTACCTCTCCGGTCGACTAAGCACC
66 GCACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTAAGCGCC
16671495 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * *
16671523 GCATACGGAA-TTCAATTCAT-GTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGC-GAGACC
1 GCATAC-GAAGTTC-ATTCCTAGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGTAGCAG-GATC
* * * * *
16671584 GACAGCACGCAGAGGGTGATTGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTCA
62 GACAGCACGCAG-GGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTAA
* * *
16671649 GTGCCCGCACGCTCGTTTCATGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
16671682 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGATCAAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
16671747 GCACGCAGGGGGGATCGGGCTGATCCTCAGCTTGCACATTCTACCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTAAGCGCC
*
16671812 CACACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16671840 GCATACGGAGTTCATT-CTATGTCTAAG
1 GCATACGAAGTTCATTCCTA-GTCTAAG
16671867 CATACGGAGT
Statistics
Matches: 284, Mismatches: 50, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.01
158 151 0.53
159 128 0.45
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16671889 original size:26 final size:26
Alignment explanation
Indices: 16671840--16671892 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16671830 GTTGGCTTAG
*
16671840 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16671866 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16671892 G
1 G
16671893 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16672253 original size:171 final size:170
Alignment explanation
Indices: 16671866--16672254 Score: 424
Period size: 171 Copynumber: 2.3 Consensus size: 170
16671856 CTATGTCTAA
*
16671866 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGTAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
** * * * * * **
16671931 GTAGGATCAATAGCACGCAGGGGGGATCTGGCTGATTCCCGGCTTACGCATTCTACCTCTCCGGT
66 ACAGGATCAACAGCACGCAGGGGAGAGCTGGCTGATCCCCGGCTTACGCATTATACCTCTCCGAC
* * *
16671996 CAGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
131 CAGCTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
* ** * * *
16672036 GCATACGGAGTTAATT-CCATGTCT-A-ATCCCCACCCAGACTGAGGGTTGTGGTAGCAGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CAGA-CCGGACTGAGGGTTGTGGCAGCAGGACCA
* * * * * ** *
16672098 GCAACGGGATCGACAGCATGGAGAGGGAGAGCTTGCTGATCCCCGGCTTGTGCATTATGCCTCTC
63 GCAACAGGATCAACAGCACGCAG-GGGAGAGCTGGCTGATCCCCGGCTTACGCATTATACCTCTC
* * * *
16672163 TGACCGGCTAAGCGGCCGCATGCTCGTTTCGTGGGTTGACTTAG
127 CGACCAGCTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
* *
16672207 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
16672255 CGATAGCAAG
Statistics
Matches: 176, Mismatches: 36, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
168 2 0.01
169 6 0.03
170 60 0.34
171 100 0.57
172 6 0.03
173 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.23
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
ACAGGATCAACAGCACGCAGGGGAGAGCTGGCTGATCCCCGGCTTACGCATTATACCTCTCCGAC
CAGCTAAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
Found at i:16672442 original size:158 final size:158
Alignment explanation
Indices: 16672173--16672737 Score: 458
Period size: 158 Copynumber: 3.6 Consensus size: 158
16672163 TGACCGGCTA
* * * * * * **
16672173 AGCGGCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC
1 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCC
** * * ** * * ** ** *
16672237 GGACCGGACCGAGGGTTGCGATAGCAAGATCGGTAGCAC-GTAGGGGGGACTGGGTCGATCCTCG
65 CAACCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGACTGGGTCGATCCTCG
* * *
16672301 ACTTGCGCATTCTACCTCTCTAGCCAGCTG
130 ACTTGCGCATTCTGCCTCT-TGGCTAGCTG
* * * * *
16672331 AGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTGCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
* * * * * * * *
16672396 AACCGGATCAAGGGTAGTGGCAGCAGGACCGGCAG-ACACAGAGGGGGACCGGGCCGATCCTTGG
66 AACCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGACTGGGTCGATCCTCGA
* * * *
16672460 CTTGCACATTATGCCTCTTCGGCTGGCTC
131 CTTGCGCATTCTGCCTCTT-GGCTAGCTG
* * ** * * * **
16672489 AGCACCTGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATC
1 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCC
* * * * * *
16672553 GAACCGGACCAAGGGTTGCGGGAGCAGGATCGACAGCACGCAAAGGGGGATTGGGTCGATCC-CT
65 CAACCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGACTGGGTCGATCCTC-
*
16672617 GACTTGCGCATTCTGTCTCTTTGGCTAGCTG
129 GACTTGCGCATTCTGCCTC-TTGGCTAGCTG
* * * *
16672648 AGCGCTCACATGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC-AAGCCCC
1 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
** *
16672712 AGTCGGACCGAGGGTTGTGGCAGCAG
66 AACCGGACCAAGGGTTGTGGCAGCAG
16672738 TACTGGTAGT
Statistics
Matches: 311, Mismatches: 88, Indels: 16
0.75 0.21 0.04
Matches are distributed among these distances:
157 6 0.02
158 215 0.69
159 88 0.28
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC
AACCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGGGACTGGGTCGATCCTCGA
CTTGCGCATTCTGCCTCTTGGCTAGCTG
Found at i:16672902 original size:26 final size:26
Alignment explanation
Indices: 16672866--16672917 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16672856 TTGACTTCGA
16672866 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* *
16672892 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
16672918 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:16673207 original size:159 final size:159
Alignment explanation
Indices: 16672891--16673394 Score: 479
Period size: 159 Copynumber: 3.2 Consensus size: 159
16672881 CCCAGTCTAA
* * * * * *
16672891 GCATACAGAGTTCATTCC-TAGTCTAAG-ATCAGA-TCGGATCGAGGGTTGCAGCAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGAGT-GGACCAAGGGTTACGGCAGCAGGATCG
* * * * * * *
16672953 GCAACACGTAG-GGGGGA-CTGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCAGCCGACTGA
64 ACAACACGCAGAGGAGGATC-GGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCAG-CGGCTGA
*
16673016 GCGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
127 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * *
16673049 GTGTAGGGAGTTCATTCCATGTCTAAGCCCCAG-GTGGACCAAGGGTTGA-GGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGAGTGGACCAAGGGTT-ACGGCAGCAGGATCGA
* * * *
16673112 CAACATGTAGAGGAGGATCGGGCTAG-TCCCCAGCTTGCGCATTATGCCTCTCCAGCTGGCTCAG
65 CAACACGCAGAGGAGGATCGGGC-AGATCCCCAGCTTGCGCATTCTGCCTCTCCAGC-GGCTGAG
* * ** * *
16673176 CGCCCACACGCTCATTTTGTGGGTCGACTTAG
128 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
16673208 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATTGGACCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGAGTGGACCAAGGGTTACGGCAGCAGGATCGA
* * * * * * * *
16673271 CAGCACGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGCCGTTGAGCG
65 CAACACGCAGAGGAGGATCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCGGCTGAGCG
16673336 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
16673366 GCATACAGAGTTAATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
16673395 TATGAAGTTC
Statistics
Matches: 276, Mismatches: 56, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
158 111 0.40
159 163 0.59
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGAGTGGACCAAGGGTTACGGCAGCAGGATCGAC
AACACGCAGAGGAGGATCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16673599 original size:26 final size:26
Alignment explanation
Indices: 16673562--16673614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16673552 GTTAACTTAG
* *
16673562 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGAAGTTCATCCCCAATCTAT
*
16673588 GCATACGAAGTTCATTCCCAATCTAT
1 GCATACGAAGTTCATCCCCAATCTAT
16673614 G
1 G
16673615 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAT
Found at i:16673634 original size:196 final size:195
Alignment explanation
Indices: 16673260--16673637 Score: 499
Period size: 196 Copynumber: 1.9 Consensus size: 195
16673250 GGGTTACGGT
* *
16673260 AGCAGGATCGACAGCACGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCA
1 AGCAGGATCGACAGCACGCAGGGGGCGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCA
* * ** *
16673325 GCCGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCT
66 GCCGCTGAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTAATCCCATGTCT
* * * * *
16673390 AAGCATATGAAGTTCATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGCGGTAGCAGACCAGC
131 AAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGCGGTAGCAGACCAGC
* *
16673455 AGCAGGATCGACAGCACGCAGGGGGCGACCGGGCTGATCCTCGGCTTGCGCA-TCATGCCTCTTC
1 AGCAGGATCGACAGCACGCAGGGGGCGACCGGGCCGATCCTCGGCTTGCGCATTC-TGCCTCTCC
* * ** * *
16673519 GGCTGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATCCCCA-G
65 AGC-CGCTGAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTAAT-CCCATG
* * * *
16673583 TCTATGCATACGAAGTTCATTCCCAATCTATGATCGGACTGAACCGAGGGTTGCG
128 TCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGCG
16673638 ACAGCAGGAT
Statistics
Matches: 156, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
194 2 0.01
195 59 0.38
196 92 0.59
197 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (195 bp):
AGCAGGATCGACAGCACGCAGGGGGCGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCA
GCCGCTGAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTAATCCCATGTCT
AAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAACCGAGGGTTGCGGTAGCAGACCAGC
Found at i:16673725 original size:697 final size:699
Alignment explanation
Indices: 16672829--16674120 Score: 1740
Period size: 697 Copynumber: 1.9 Consensus size: 699
16672819 TCCCACAGGT
* ** * *
16672829 TGAGCGCCTGCATGCTCGTTTTGTGGGTTGACTTCGACATACAGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACACTCGTTTTGTGGGTTAACTTAGACATACAGAGTTCATCCCCAGTCTAAGCA
* * * * *
16672894 TACAGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGCAGGATCGGCAACA
66 TACAGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGCAGCAGCAGGATAGGCAACA
* * * * *
16672959 CGTAGGGGGGACTGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCAGCCGACTGAGCGCCCGC
131 CGCAAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGC
** * ***
16673024 ACGCCCGTTTCATGGGTTGGCTTAGGTGTAGGGAGTTCATTCCATGTCTAAGCCCCAGGTGGACC
196 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACC
** * * *
16673089 AAGGGTTGAGGCAGCGGGA-TCGACAACATGTAGAGGAGGATCGGGCTAGTCCCCAGCTTGCGCA
261 AAGGGTTGAGGCAGCAAGACT-GACAACACGTAGAGGAGGATCGGGCCACTCCCCAGCTTGCGCA
* * *
16673153 TTATGCCTCTCC-AGCTGGCTCAGCGCCCACACGCTCATTTTGTGGGTCGACTTAGGCATACGGA
325 TTATGCCTCTCCAATC-GGCTCAGCGCCCACACACTCATTTCGTGGGTCGACTTAGGCATACGGA
* *
16673217 GTTCATTCCTAGTCTAAGATCAGATTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGG
389 GTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAAG
* * * * *
16673282 GGGGGATCGGGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCC-AGCCGTTGAGCGCCCGCACGC
454 GGGGCATCGGGCCAATCCCTCGGCTTGCGCATTCTGCCTCTCCGAGCCGCTGAACGCCCGCAAGC
*
16673345 TCGTTTCATGGGTTGGCTTAGGCATACA-GAGTTAATTCCATGTCTAAGCATATGAAGTTCATTC
519 TCGTTTCATGGGTTGGCTTAGGCATA-AGGAGTTAATTCCATGTCTAAGCATACGAAGTTCATTC
*
16673409 CCAGTCTAAGATTGAACCGGACTGAGGGTTGCGGTAGCAGACCAGCAGCAGGATCGACAGCACGC
583 CCAATCTAAGATTGAACCGGACTGAGGGTTGCGGTAGCAGACCAGCAGCAGGATCGACAGCACGC
16673474 AGGGGGCGACCGGGCTGATCCTCGGCTTGCGCATCATGCCTCTTCGGCTGGC
648 AGGGGGCGACCGGGCTGATCCTCGGCTTGCGCATCATGCCTCTTCGGCTGGC
* * *
16673526 TGAGCGCCCGCACACTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTATGCA
1 TGAGCGCCCGCACACTCGTTTTGTGGGTTAACTTAGACATACAGAGTTCATCCCCAGTCTAAGCA
* * **
16673591 TAC-GAAGTTCATTCCCAATCTATGATCGGA-CTGAACCGAGGGTTGC-GACAGCAGGATTAGTT
66 TACAG-AGTTCATTCCCAATCTAAGATCAGATC-GAACCGAGGGTTGCAG-CAGCAGGA-TAGGC
* * * * *
16673653 GAC-TGCAAGGGGGACCT-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCA
127 AACACGCAAGGGGGA-CTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCA
* *
16673716 CCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCC
191 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCC
* * * * * **
16673781 AGACCGAGGGTTGTGGCAGCAAGACTGGCAGCACGTAGAGGGGGATCGGGCCACTCCCTGGCTTG
256 AGACCAAGGGTTGAGGCAGCAAGACTGACAACACGTAGAGGAGGATCGGGCCACTCCCCAGCTTG
* * * * ** * *
16673846 CGCATTATGCCTCTTCAATCGGGTCAGTGCCCGCACACTTGTTTCGTGGGTTGACTTATGCATAC
321 CGCATTATGCCTCTCCAATCGGCTCAGCGCCCACACACTCATTTCGTGGGTCGACTTAGGCATAC
* * * *
16673911 GGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATTGACAGCATGT
386 GGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGC
* ***
16673976 AAGGGGGCATCGGGCCAATCCCTCGGCTTGCTCATTCTGCCTCTCCGATTGGCTGAACGCCCGCA
451 AAGGGGGCATCGGGCCAATCCCTCGGCTTGCGCATTCTGCCTCTCCGAGCCGCTGAACGCCCGCA
* * *
16674041 AGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
516 AGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCATACGAAGTTCAT
16674106 TCCCAATCTAAGATT
581 TCCCAATCTAAGATT
16674121 TTGAGCCACG
Statistics
Matches: 507, Mismatches: 78, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
696 3 0.01
697 384 0.76
698 35 0.07
699 85 0.17
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (699 bp):
TGAGCGCCCGCACACTCGTTTTGTGGGTTAACTTAGACATACAGAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGCAGCAGCAGGATAGGCAACA
CGCAAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGC
ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACC
AAGGGTTGAGGCAGCAAGACTGACAACACGTAGAGGAGGATCGGGCCACTCCCCAGCTTGCGCAT
TATGCCTCTCCAATCGGCTCAGCGCCCACACACTCATTTCGTGGGTCGACTTAGGCATACGGAGT
TCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAAGGG
GGCATCGGGCCAATCCCTCGGCTTGCGCATTCTGCCTCTCCGAGCCGCTGAACGCCCGCAAGCTC
GTTTCATGGGTTGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCATACGAAGTTCATTCCCA
ATCTAAGATTGAACCGGACTGAGGGTTGCGGTAGCAGACCAGCAGCAGGATCGACAGCACGCAGG
GGGCGACCGGGCTGATCCTCGGCTTGCGCATCATGCCTCTTCGGCTGGC
Found at i:16674077 original size:160 final size:160
Alignment explanation
Indices: 16673675--16674093 Score: 445
Period size: 159 Copynumber: 2.6 Consensus size: 160
16673665 GACCTGGTCG
** * * * * *
16673675 ATCCC-CGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCTGCACGCCCGTTTCGTGGGTT
1 ATCCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTT
* * * **
16673739 GGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAG
66 GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTACGGCAGCAAG
*
16673804 ACTGGCAGCACGTAGAGGGGGATCGGGCCA
131 ACTGACAGCACGTAGAGGGGGATCGGGCCA
* * * * * * * *
16673834 CTCCCT-GGCTTGCGCATTATGCCTCTTCAATCGGGTCAGTGCCCGCACA-CTTGTTTCGTGGGT
1 ATCCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA-AGCTCGTTTCGTGGGT
* * * * * * * *
16673897 TGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATCGGATCGAGGGTTACGGTAGC
65 TGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTAAGCACCAG-CCAGACCGAGGGTTACGGCAGC
* * *
16673960 AGGATTGACAGCATGTA-AGGGGGCATCGGGCCA
128 AAGACTGACAGCACGTAGAGGGGG-ATCGGGCCA
* * *
16673993 ATCCCTCGGCTTGCTCATTCTGCCTCTCCGATTGGCTGAACGCCCGCAAGCTCGTTTCGTGGGTT
1 ATCCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTT
16674058 GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
66 GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
16674094 TACGGAGTTC
Statistics
Matches: 206, Mismatches: 45, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
158 10 0.05
159 119 0.58
160 75 0.36
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
ATCCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTT
GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGTTACGGCAGCAAG
ACTGACAGCACGTAGAGGGGGATCGGGCCA
Found at i:16674115 original size:26 final size:26
Alignment explanation
Indices: 16674065--16674117 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16674055 GTTGGCTTAG
*
16674065 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATATCTAA
*
16674091 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATAAGGAGTTCATT-CCATATCTAA
16674117 G
1 G
16674118 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATATCTAA
Found at i:16674832 original size:26 final size:26
Alignment explanation
Indices: 16674795--16674847 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16674785 GTTGACTTAG
16674795 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
16674821 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16674847 G
1 G
16674848 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16675137 original size:159 final size:158
Alignment explanation
Indices: 16674821--16675322 Score: 654
Period size: 158 Copynumber: 3.2 Consensus size: 158
16674811 CCTAGTCTAA
* * *
16674821 GCATACGTAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
*
16674886 GCACGCAGGGGGGATCGGCCCGGTCCCCGGCTTGCTCATTCTGCCTCTCCGACCAGCTGAGCGCC
66 GCACGCAGGGGGGATCGGCCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
*
16674951 CACACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
16674979 GCATACGAAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGACGGTTGT-AGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGA-CAGCAGGATCG
* * * *
16675041 ACAGCACGCAGAGGGGGATCGAG-CCGATGCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCA
63 ACAGCACGCAG-GGGGGATCG-GCCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGA
* * * * * *
16675105 GCACCCGTACACTTGTTTTGTGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
16675138 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
*
16675203 GCACGTAGGGGGGATCGGCCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
66 GCACGCAGGGGGGATCGGCCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
* * *
16675268 TGCACGCTCATTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
16675296 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16675323 CATATAGAGT
Statistics
Matches: 289, Mismatches: 45, Indels: 20
0.82 0.13 0.06
Matches are distributed among these distances:
157 8 0.03
158 150 0.52
159 126 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGCCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16675843 original size:158 final size:158
Alignment explanation
Indices: 16675554--16675980 Score: 484
Period size: 158 Copynumber: 2.7 Consensus size: 158
16675544 GCACGTAGCG
* * * *
16675554 GGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCTC
* ** *
16675619 G-TTTGATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGTCGGATTGAGGG
66 GTTTTG-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAAGG
* **** *
16675683 TTGTGGCAGTGGGACCGACAGCACGCAGA
130 TTGCGGCAGCAAAACCGACAACACGCAGA
* * * * * * ** *
16675712 GGGGACTGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGGTCAATGCCCACGCGCTC
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCTC
* **
16675777 GTTTTGTGGGTTGAG-TTAGGCTTACGGAGTTCATTCCCA-GTCTAAGA-TTAGACCGGACCGAA
66 GTTTTGTGGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAG-CCGGACCGAA
* * *
16675839 GGTTGCGGTAGCAAAATCGACAACACGCAGG
128 GGTTGCGGCAGCAAAACCGACAACACGCAGA
* * *
16675870 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCCACACGCTC
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCTC
**
16675935 GTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16675981 CATCCAGAGT
Statistics
Matches: 220, Mismatches: 43, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 6 0.03
158 206 0.94
159 8 0.04
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCTC
GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAAGGT
TGCGGCAGCAAAACCGACAACACGCAGA
Found at i:16676830 original size:26 final size:26
Alignment explanation
Indices: 16676801--16676853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16676791 GTTGGCTTAG
*
16676801 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16676827 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16676853 G
1 G
16676854 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16677562 original size:26 final size:26
Alignment explanation
Indices: 16677525--16677577 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16677515 GTTGACTTAG
*
16677525 GCATACGAAGTTGATCCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* * *
16677551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
16677577 G
1 G
16677578 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:16679753 original size:26 final size:26
Alignment explanation
Indices: 16679703--16679754 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16679693 GTTGGCTTAG
* *
16679703 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
16679729 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16679755 AGATTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16686990 original size:158 final size:158
Alignment explanation
Indices: 16686693--16687001 Score: 413
Period size: 158 Copynumber: 2.0 Consensus size: 158
16686683 TAGGATCGGA
* *
16686693 CTGGACCGAGGGTTACGACAGCAGGATCGATAGCACGTAGGTGGGACCGAGCCAATCCCTAGCTT
1 CTGGACCGAGGGTTACGACAGCAGGACCGATAGCACGTAGGTGGGACCGAGCCAATCCCCAGCTT
* * * *
16686758 GGGCATTCTACCTCTCCGGCCGACTGAGTGCCCGCACGCCCGTTTTATGCGTTGGCTTAGGCATA
66 GCGCATTCTACCTCTCCGGCCGACTGAGCGCCCACACGCCCGTTTCATGCGTTGGCTTAGGCATA
* *
16686823 GGGAGTTCATTCCATGTCTAAGCCCCAG
131 CGGAATTCATTCCATGTCTAAGCCCCAG
** * * *
16686851 CTGGACCGAGGGTTGTGGCAGCAGGACCGA-AGCACGTAGAGTGGGATCGGGCCAATCCCCAGCT
1 CTGGACCGAGGGTTACGACAGCAGGACCGATAGCACGTAG-GTGGGACCGAGCCAATCCCCAGCT
* * ** * * *
16686915 TGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCAT
65 TGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCACACGCCCGTTTCATGCGTTGGCTTAGGCAT
*
16686980 ACGGAATTCATTCTATGTCTAA
130 ACGGAATTCATTCCATGTCTAA
16687002 TAGTTTGAGC
Statistics
Matches: 129, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
157 9 0.07
158 120 0.93
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CTGGACCGAGGGTTACGACAGCAGGACCGATAGCACGTAGGTGGGACCGAGCCAATCCCCAGCTT
GCGCATTCTACCTCTCCGGCCGACTGAGCGCCCACACGCCCGTTTCATGCGTTGGCTTAGGCATA
CGGAATTCATTCCATGTCTAAGCCCCAG
Found at i:16687704 original size:26 final size:26
Alignment explanation
Indices: 16687674--16687726 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16687664 GTTGACTTAG
16687674 GCATAC-AGAGTTCA-TCCCTAGTCTAA
1 GCATACGA-AGTTCATTCCC-AGTCTAA
16687700 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16687726 G
1 G
16687727 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16688228 original size:26 final size:26
Alignment explanation
Indices: 16688176--16688228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16688166 GTTGGGTTAG
** *
16688176 GCATACGGAGTTCATTCCTTGTTTAA
1 GCATACGGAGTTCATTCCAAGTGTAA
16688202 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTGTAA
16688228 G
1 G
16688229 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTGTAA
Found at i:16688408 original size:26 final size:26
Alignment explanation
Indices: 16688372--16688424 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16688362 GTTGACTTAG
16688372 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16688398 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16688424 G
1 G
16688425 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16688585 original size:184 final size:184
Alignment explanation
Indices: 16688266--16688598 Score: 454
Period size: 184 Copynumber: 1.8 Consensus size: 184
16688256 TAAGACTAGC
* * * **
16688266 AGTAGGCTCGACAGCACGCAGGGGGGATCGAGACGATCCTCGGCTTATTCATTCTGCCTCTCCGG
1 AGTAGGATCGACAGCACGCAGGGGGGACCGAGACGATCCCCGGCTTACGCATTCTGCCTCTCCGG
* ** * *
16688331 CCTGCTGAGTGCCCACACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
66 CCGGCTGAGCACCCACACGCCCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
16688396 AAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGCGAT
131 AAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGCGAT
* *
16688450 AGTAGGATCGACAGCACGTAGGGGGGACCGAGTA-GATCCCCGGCTTGCGCATTCTGCCTCTCCG
1 AGTAGGATCGACAGCACGCAGGGGGGACCGAG-ACGATCCCCGGCTTACGCATTCTGCCTCTCCG
* * * * * *
16688514 GTCGGCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
65 GCCGGCTGAGCACCCACACGCCCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATCCCCA-GT
* *
16688578 TTAAGCATACGGAGTTTATTC
129 CTAAGCATACGGAGTTCATTC
16688599 ATAGTCTAAG
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
183 3 0.02
184 123 0.97
185 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (184 bp):
AGTAGGATCGACAGCACGCAGGGGGGACCGAGACGATCCCCGGCTTACGCATTCTGCCTCTCCGG
CCGGCTGAGCACCCACACGCCCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGCGAT
Found at i:16688608 original size:26 final size:26
Alignment explanation
Indices: 16688556--16688608 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16688546 GTTGGCTTAG
*
16688556 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16688582 GCATACGGAGTTTATT-CATAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
16688608 G
1 G
16688609 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16689330 original size:26 final size:26
Alignment explanation
Indices: 16689280--16689331 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16689270 GTTGACTTAG
* *
16689280 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
16689306 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
16689332 AATCAAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:16689659 original size:26 final size:26
Alignment explanation
Indices: 16689623--16689673 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16689613 TTGGCTTAGG
*
16689623 CATATGGAGTTCATTC-CATGTCTAAA
1 CATACGGAGTTCATTCACA-GTCTAAA
16689649 CATACGGAGTTCATTCACAGTCTAA
1 CATACGGAGTTCATTCACAGTCTAA
16689674 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCACAGTCTAAA
Found at i:16690374 original size:26 final size:26
Alignment explanation
Indices: 16690338--16690393 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16690328 TAGGTTGACT
16690338 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATATGGAGTTCATCCCCAGTC
* *
16690364 TAAGTATATGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATCCCCAGTC
16690390 TAAG
1 TAAG
16690394 ATTGGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATCCCCAGTC
Found at i:16690858 original size:157 final size:157
Alignment explanation
Indices: 16690373--16691185 Score: 582
Period size: 159 Copynumber: 5.1 Consensus size: 157
16690363 CTAAGTATAT
** * * * * *
16690373 GGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGACAGCAGGATCGATAGAACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGT
* * *
16690438 AGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATG
66 AGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
16690503 CCCGTTTCGTGGGTTGGCTTAGGCATAG
131 CCC-TTTCGTGGGTTGGCTTAGGCATAG
* ** * ** * * *
16690531 GGAGTTCA-TCCAATGTCTAAGCCCCAG-TCGGACCGAGGGTTTTGGCAGCAAGATCGGCAGCAC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCAC
* * * * * * *
16690594 GTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCTGGCTCAGCACGCGC
64 GTAG-GGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGC
** *
16690659 ACGCTCCTTTCGTGGGTTGAATTAGGCATAC
128 ACGC-CCTTTCGTGGGTTGGCTTAGGCATAG
** * * * * * *
16690690 AAAGTTTATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGACAGTAGGATTGACAGCACAT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGT
* * * **
16690755 AGGGGGGATCAGG-CGATCCCCGGCTTGCGCGTTCTACCTCTCCAACCGGCTGAGCACCCGCACG
66 AGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
* *
16690819 CCCATTTCATGGATTGGCTTAGGCATAG
131 CCC-TTTCGTGGGTTGGCTTAGGCATAG
* ** ** * * * **
16690847 GGAGTTCATT-CCATCTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCAC
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCAC
* * * * * ** * * ** * *
16690910 GTAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCACGAC-ACCTCTTCGATCGGCTTAGCGCCCG
64 GTAG-GGGGGATCAGGTCGATCCCCGACTTGCGCA-TTCTGCCTCTCCGGCCGGCTGAGCACCCG
* * * * ** * *
16690974 TATGCTCATTTTGTGGGTTGATTTATGCATAT
127 CACGC-CCTTTCGTGGGTTGGCTTAGGCATAG
* * * * *
16691006 AGAGTTCATTCCCAATCTAAGATC-GAACCGAACTC-AGGGTTACGATAGCAAGATCGACAGCAC
1 GGAGTTCATTCCCAGTCTAAGATCAG-ACCGGAC-CGAGGGTTACGACAGCAGGATCGACAGCAC
** * * * * * * *
16691069 ACAATGGGGGACCGGGTCGATCCCCGACTTACACATTCTGCCTCTCCGACCGGCTGAGCACCTGC
64 -GTAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGC
* * *
16691134 ACGCTCGTTTCGTGGGTTGGCTTAGGCCTAC
128 ACGC-CCTTTCGTGGGTTGGCTTAGGCATAG
*
16691165 GAAGTTCATT-CCATGTCTAAG
1 GGAGTTCATTCCCA-GTCTAAG
16691186 CATACGGAGT
Statistics
Matches: 492, Mismatches: 143, Indels: 39
0.73 0.21 0.06
Matches are distributed among these distances:
156 5 0.01
157 107 0.22
158 74 0.15
159 293 0.60
160 13 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGT
AGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
CCCTTTCGTGGGTTGGCTTAGGCATAG
Found at i:16691027 original size:316 final size:315
Alignment explanation
Indices: 16690369--16691186 Score: 967
Period size: 316 Copynumber: 2.6 Consensus size: 315
16690359 CAGTCTAAGT
* * * * * * *
16690369 ATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGACAGCAGGATCGATAGA
1 ATATAGAGTTCATTCCCAGTCTAAGA-TCGACCGAACC-AGGGTTACGACAGCAGGATCGACAGC
** ** *
16690434 ACGCAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
64 ACAAAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
* *
16690499 CATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA-TCCAATGTCTAAGCCCCAGTCGGA
129 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAGCCGGA
* * *
16690563 CCGAGGGTTTTGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGC
193 CCGAGGGTTGTGGCAGCAAGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGC
** ** * *
16690628 ATTATGCCTCTTCGGCTGGCTCAGCACGCGCACGCTCCTTTCGTGGGTTGAATTAGGC
258 ACGACACCTCTTCGGCTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGAATTAGGC
* * * * *
16690686 ATACAAAGTTTATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGACAGTAGGATTGACAGC
1 ATATAGAGTTCATTCCCAGTCTAAGATC-GACCGAACC-AGGGTTACGACAGCAGGATCGACAGC
* * * * *
16690751 ACATAGGGGGGATCAGG-CGATCCCCGGCTTGCGCGTTCTACCTCTCCAACCGGCTGAGCACCCG
64 ACAAAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCG
* * * *
16690815 CACGCCCATTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATCTCTAAGCCCCAGCCGGAC
129 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
** * * *
16690880 CGAGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCA
194 CGAGGGTTGTGGCAGCAAGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCA
* * * * * * * *
16690945 CGACACCTCTTC-GATCGGCTTAGCGCCCGTATGCTCATTTTGTGGGTTGATTTATGC
259 CGACACCTCTTCGGCT-GGCTCAGCACCCGCACGCTCATTTCGTGGGTTGAATTAGGC
* * *
16691002 ATATAGAGTTCATTCCCAATCTAAGATCGAACCGAACTCAGGGTTACGATAGCAAGATCGACAGC
1 ATATAGAGTTCATTCCCAGTCTAAGATCG-ACCGAAC-CAGGGTTACGACAGCAGGATCGACAGC
* * * * * *
16691067 ACACAATGGGGGACCGGGTCGATCCCCGACTTACACATTCTGCCTCTCCGACCGGCTGAGCACCT
64 ACA-AAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC
* * * *
16691132 GCACGCTCGTTTCGTGGGTTGGCTTAGGCCTACGAAGTTCATTCCATGTCTAAGC
128 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16691187 ATACGGAGTT
Statistics
Matches: 417, Mismatches: 77, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
315 3 0.01
316 249 0.60
317 79 0.19
318 86 0.21
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (315 bp):
ATATAGAGTTCATTCCCAGTCTAAGATCGACCGAACCAGGGTTACGACAGCAGGATCGACAGCAC
AAAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
AGGGTTGTGGCAGCAAGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCACG
ACACCTCTTCGGCTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGAATTAGGC
Found at i:16691914 original size:26 final size:26
Alignment explanation
Indices: 16691864--16691916 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16691854 GTTGACTTAG
* *
16691864 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
16691890 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
16691916 G
1 G
16691917 ATCAAACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:16693222 original size:538 final size:542
Alignment explanation
Indices: 16692169--16693312 Score: 1307
Period size: 538 Copynumber: 2.1 Consensus size: 542
16692159 TTTGATCGGC
* * * *
16692169 TCAGCACCCACACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCTAGTCTAAGAT
1 TCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * ** *
16692234 CAGACTGGACGGAGGGTTACGGTAGCAGGATCGATAGCATGCAAGGGGGGACTTGGTCGATCCCT
66 CAGACCAGACGGAGGGTTACGATAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCCGATCCCT
* * * * *
16692299 GACTTGTGCATTCTGTATCTCCGACCGACTGAGCATCTGCACGCACGGTTGTTTCGTGGGTTGGC
131 GACTTGTGCATTCTGCATCTCCGACCGACTGAGCATC-GCACGCAAGCTCGTTTCATGGGTTGGC
* * * * *
16692364 TTAGGCATACGGAGTTAATTCCATTTCTAAGCATACGGAGCTCATTGCCAGTCTAAGATTGGATC
195 TTAGGCATACAGAGTTAATTCCATGTCTAAGCATACGGAGCTCATTACCAATCTAAGATTGGACC
* * * * *
16692429 AGACCGAGGGTTACGATAGCAAGACCAGGAGCAGGATCGACAGCACACAGGGGGGATCGGGCCGA
260 AGACCGAGGGTTACGACAGCAAGACCAGCAACAGGATCGACAGCACACAGGGGAGATCGGGCCAA
*
16692494 TCCCCAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
325 TCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* * * * ** *
16692559 CTTTGGTATACGGAGTTCATTCTATTTCTAAGCCCCAGTCGGATCGAGGATTGTATTAGCAGGAC
390 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGATTGTAGCAACAGGAC
* * * * * * **
16692624 CGGCAGCGGGATCGGCAGCACGCAGAGCGGGATCAGGCTGATCCCTGGCTTGTGCATTATGCCTC
455 CGACAGAGGGATCGGCAGCACGCAAAGCGGGACCAAGCTGAACCCTGGCTTGCCCATTATGCCTC
* *
16692689 TTCGGCCGGCCACTCCGATCGAT
520 TCCAGCCGGCCACTCCGATCGAT
* *
16692712 TCAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
1 TCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
16692777 -TGACCAGATC-GAGGGTTACGATAGCAGGATCGACAGCACG-TAGGGGGGACCGGGCCGGTCCC
66 CAGACCAGA-CGGAGGGTTACGATAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCCGATCCC
* * * ** ** * *
16692839 TGGCTTGTGCATTTTGCCTCTCCGGTCGGTTGAGCA-C-C-CGTAAGCTCGTTTTATGGGTTGGC
130 TGACTTGTGCATTCTGCATCTCCGACCGACTGAGCATCGCACGCAAGCTCGTTTCATGGGTTGGC
* * *
16692901 TTAGGCATATAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTACCAATCT-AGCATTGGAC
195 TTAGGCATACAGAGTTAATTCCATGTCTAAGCATACGGAGCTCATTACCAATCTAAG-ATTGGAC
* ** * ** **
16692965 CGGACCCGAGGGTTGTGACAGCAGGACCAGCAACAGGATCGGTAGCATGCAGGGGAGATCGGGCC
259 CAGA-CCGAGGGTTACGACAGCAAGACCAGCAACAGGATCGACAGCACACAGGGGAGATCGGGCC
** * * * * * * * *
16693030 AATCTTCGGCTTGTGTATTTTCCCTCTCTGACCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTT
323 AATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
16693095 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGA-CTGAGGGTTGTGGCAATAG
388 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC-GAGGATTGTAGCAACAG
* * *
16693159 GACCGACAGAGGGATCGGTAGTACGCAAAGGGGGACCAAGCTGAA-CCTCGGCTTGCCCATTATG
452 GACCGACAGAGGGATCGGCAGCACGCAAAGCGGGACCAAGCTGAACCCT-GGCTTGCCCATTATG
* * * *
16693223 CCTCTCCAGCCGGGCTCTCCGGTCGGT
516 CCTCTCCAGCCGGCCACTCCGATCGAT
* * * * *
16693250 TAAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
1 TCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16693313 CACACGGAGT
Statistics
Matches: 498, Mismatches: 98, Indels: 15
0.82 0.16 0.02
Matches are distributed among these distances:
536 2 0.00
537 78 0.16
538 280 0.56
540 1 0.00
541 45 0.09
542 32 0.06
543 60 0.12
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (542 bp):
TCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACGGAGGGTTACGATAGCAGGATCGACAGCACGCAAGGGGGGACCGGGCCGATCCCT
GACTTGTGCATTCTGCATCTCCGACCGACTGAGCATCGCACGCAAGCTCGTTTCATGGGTTGGCT
TAGGCATACAGAGTTAATTCCATGTCTAAGCATACGGAGCTCATTACCAATCTAAGATTGGACCA
GACCGAGGGTTACGACAGCAAGACCAGCAACAGGATCGACAGCACACAGGGGAGATCGGGCCAAT
CCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGATTGTAGCAACAGGACC
GACAGAGGGATCGGCAGCACGCAAAGCGGGACCAAGCTGAACCCTGGCTTGCCCATTATGCCTCT
CCAGCCGGCCACTCCGATCGAT
Found at i:16693667 original size:159 final size:157
Alignment explanation
Indices: 16693318--16693813 Score: 440
Period size: 159 Copynumber: 3.1 Consensus size: 157
16693308 CTAAGCACAC
* * * * *
16693318 GGAGTTCATTCCCA-GTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGTAGGATCGATAGCACG
1 GGAGTTCATT-CCATGTCTAAGATTGAACCGGACCGAGGGTTGTGCCAGTAGGATCGACAGCACG
* ** * * * * * * * * * *
16693382 TAGGGGGGGCCGAGCTGATCACCGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCACCCGCAT
65 CAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTAC
* *
16693447 GCCCGTTTCGT-GGTTGGCCTAGGCATA
130 GCTCGTTTCGTGGGTTGGCTTAGGCATA
**** * * ** *
16693474 GGTAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGCCAGCGGGATCGGCAGCACG
1 GG-AGTTCATTCCATGTCTAAGATTGAACCGGACCGAGGGTTGTGCCAGTAGGATCGACAGCACG
* * * *
16693539 CAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTATTTTGCCTCTTCGGTCGGCTCAGCGCTCGTA
65 CAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTA
* * *
16693604 CACTCGTTTCGTGGGTTGACTTATGCATA
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * **
16693633 TGGAGTTCATTCCCA-GTCTAAGATTGAACCGGACCGAGTGTTGCGTTAGTAGGATCGACAGCAC
1 -GGAGTTCATT-CCATGTCTAAGATTGAACCGGACCGAGGGTTGTGCCAGTAGGATCGACAGCAC
* ** * * * * *
16693697 GCAGGGGGGGATCGGGCCTATCCTTGACATGCGCATTCTGCCTCTTCGGCCTGCTGAGTGCCCGT
64 GCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGT
** *
16693762 ACGCTCCATTCATGGGTTGGCTTAGGCATA
128 ACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
16693792 CAGAGTTCATTCCATGTCTAAG
1 -GGAGTTCATTCCATGTCTAAG
16693814 CATACGGAGT
Statistics
Matches: 263, Mismatches: 69, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
156 5 0.02
157 46 0.17
158 58 0.22
159 148 0.56
160 6 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATTGAACCGGACCGAGGGTTGTGCCAGTAGGATCGACAGCACGC
AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTACG
CTCGTTTCGTGGGTTGGCTTAGGCATA
Found at i:16693817 original size:26 final size:26
Alignment explanation
Indices: 16693787--16693839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16693777 GTTGGCTTAG
16693787 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16693813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16693839 G
1 G
16693840 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16693941 original size:11 final size:11
Alignment explanation
Indices: 16693911--16693935 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16693901 CGGGGCACCG
16693911 TCGTCGGAGCA
1 TCGTCGGAGCA
16693922 TCGTCGGAGCA
1 TCGTCGGAGCA
16693933 TCG
1 TCG
16693936 CTGGAGAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (11 bp):
TCGTCGGAGCA
Found at i:16694557 original size:26 final size:26
Alignment explanation
Indices: 16694521--16694573 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16694511 GTTGACTTAG
*
16694521 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16694547 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16694573 G
1 G
16694574 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16695022 original size:158 final size:155
Alignment explanation
Indices: 16694547--16695048 Score: 437
Period size: 158 Copynumber: 3.2 Consensus size: 155
16694537 CCCAGTCTAA
* * * * *
16694547 GCATACGGAGTTCATTCC-TAGTCTAAGATCGAATC-GAACCGAGGGTTACGGTAGCAAGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATAGGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGA
* * **
16694610 TAACACGCTAGGGGGACCGAGCCGGTCCCTGGCTTGCTCATTCTGCCTCTTTGGTCGGCTAAGCG
64 TAACACGCAAGGGGGA-CGAGCC-GTCCC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCG
* * *
16694675 CCCACACGCCCGTTTCATGGGTTGGCTTAG
126 CCCGCACGCTCGTTTCATGGGTTGGATTAG
* ** * * * **
16694705 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-G-CCAGGCCGAGGGTTGTGGCAGTGGGA-CAG
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGGACCAGACCGAGGGTTGCGGTAGCAGGATC-G
** * * *
16694767 GCAACACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GACTGGCTCA
63 ATAACACGCA-AGGGGGACGA-GCCG-T-CCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCT-A
* *
16694831 A-CGCCCGTATGCTCGTTTCATGGGTT-GACTTAG
122 AGCGCCCGCACGCTCGTTTCATGGGTTGGA-TTAG
* * *
16694864 GCGTACGGAGTTGATTCCCA-GTCTAAGATAGGACCAGACCGAGGGTTGGGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * *
16694928 AGCACGCAAGGGGGATCGAGCCAGTCCTCGGCTTGCGCATTCTGCCCCTCCGGTCGGTTGAGCAC
65 AACACGCAAGGGGGA-CGAGCC-GTCC-CGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
*
16694993 CCGCACGCTCATTTCATGGGTTGGATTAG
127 CCGCACGCTCGTTTCATGGGTTGGATTAG
*
16695022 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16695049 CATATATAGT
Statistics
Matches: 268, Mismatches: 53, Indels: 46
0.73 0.14 0.13
Matches are distributed among these distances:
157 8 0.03
158 135 0.50
159 116 0.43
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
ACACGCAAGGGGGACGAGCCGTCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGC
ACGCTCGTTTCATGGGTTGGATTAG
Found at i:16695052 original size:26 final size:26
Alignment explanation
Indices: 16695022--16695074 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16695012 GTTGGATTAG
16695022 GCATACGA-AGTTCATT-CCATGTCTAA
1 GCATA-GATAGTTCATTCCCA-GTCTAA
*
16695048 GCATATATAGTTCATTCCCAGTCTAA
1 GCATAGATAGTTCATTCCCAGTCTAA
16695074 G
1 G
16695075 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATAGATAGTTCATTCCCAGTCTAA
Found at i:16695319 original size:354 final size:352
Alignment explanation
Indices: 16694780--16695582 Score: 973
Period size: 354 Copynumber: 2.3 Consensus size: 352
16694770 ACACGCAGAG
* * * * * *
16694780 GGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAACGCCCGTATGCTC
1 GGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CGATTGGCTGAACGCCCGCACGCTC
* *
16694845 GTTTCATGGGTTGACTTAGGCGTACGGAGTTGATTCCCAGTCTAAGATAGGACCAGACCGAGGGT
65 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGT
* * * * *
16694910 TGGGGTAGCAGGATCGATAGCACGCAAGGGGGATCGAGCCAGTCCTCGGCTTGCGCATTCTGCCC
130 TGGGGCAGCAGGATAGACAGCACGCAAGGGGGACCGAGCCAGTCCTCGACTTGCGCATTCTGCCC
** **
16694975 CTCCGGTCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGATTAGGCATACGAAGTTCATTCC
195 CTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGATTAGGCATACG-AGTTCATTCC
* * ** * * **
16695040 ATGTCTAAGCATATATAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGTAG
259 ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAAACAG
* * *
16695105 GACCAGCAGTAGGAACGATAGTGCAC-AGG-
324 GACCAGCAGCAGGAACGACA--ACACGAGGA
* * * * *
16695134 GGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCGTCGGTTGGCTGAACGCCTGCACGCTC
1 GGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCGATTGGCTGAACGCCCGCACGCTC
* * * * *
16695199 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGT
65 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGT
* * * * * * *
16695264 TGTGGCAGCAGGATAGACAGCACTCAGGGGGGACCGGGTCGGTCCTCGACTTGCGCATTCTGCCT
130 TGGGGCAGCAGGATAGACAGCACGCAAGGGGGACCGAGCCAGTCCTCGACTTGCGCATTCTGCCC
* * * ** *
16695329 CTTCGACCGACTGAGCACCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGAGTTCATTCCA
195 CTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGATTAGGCATACGAGTTCATTCCA
*
16695394 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAAACAGG
260 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAAACAGG
**
16695459 ACCAGCAGCAGGGTCGACAACACGTAGGA
325 ACCAGCAGCAGGAACGACAACACG-AGGA
* * * * *
16695488 GGGGATCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGATAGGCTGAGCACCCGCACGCTC
1 GGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCGATTGGCTGAACGCCCGCACGCTC
* *
16695553 GTTTCGTGGG-TGGCTTAGGCATACGGAGTT
65 GTTTCATGGGTTGACTTAGGCATACGGAGTT
16695583 TTTTCCATGG
Statistics
Matches: 377, Mismatches: 68, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
351 3 0.01
353 104 0.28
354 269 0.71
355 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (352 bp):
GGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGATTGGCTGAACGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTT
GGGGCAGCAGGATAGACAGCACGCAAGGGGGACCGAGCCAGTCCTCGACTTGCGCATTCTGCCCC
TCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGATTAGGCATACGAGTTCATTCCAT
GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAAACAGGA
CCAGCAGCAGGAACGACAACACGAGGA
Found at i:16695404 original size:25 final size:26
Alignment explanation
Indices: 16695376--16695427 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16695366 GTTGGCTTAG
16695376 GCATAC-GAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16695401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16695427 G
1 G
16695428 ATCAGACCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 16 0.64
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16695612 original size:354 final size:351
Alignment explanation
Indices: 16694779--16695770 Score: 965
Period size: 354 Copynumber: 2.8 Consensus size: 351
16694769 AACACGCAGA
* * * * * * *
16694779 GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCCGACT-GGCTCAACGCCCGTATG
1 GGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCGT-CGA-TAGGCTGAACACCCGCACG
* * * * * *
16694842 CTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTGATTCCCAGTCTAAGAT-AGGACCAGACCGA
64 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCA-GACCGGATCGA
* * * * * * * * *
16694906 GGGTTGGGGTAGCAGGATCGATAGCACGCAAGGGGGATCGAGCCAGTCCTCGGCTTGCGCATTCT
128 GGGTTGTGGTAGCAGGATAGACAGCACTCAGGGGGGACCG-GGCGGTCCTCGACTTGCGCATTCT
* * * * ** *
16694971 GCCCCTCCGGTCGGTTGAGCACCCGCACGCTCATTTCATGGGTTGGATTAGGCATACGAAGTTCA
192 GCCTCTTCGGTCGGCTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACG-AGTTCA
* * ** * *
16695036 TTCCATGTCTAAGCATATATAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCA
256 TTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAA
** * * *
16695101 GTAGGACCAGCAGTAGGAACGATAGTGCACAG
321 ACAGGACCAGCAGCAGGAACGACAG-ACACAG
* * * * * *
16695133 GGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCGTCGGTTGGCTGAACGCCTGCACGCT
1 GGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCGTCGATAGGCTGAACACCCGCACGCT
* * *
16695198 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGG
66 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGATCGAGGG
*
16695263 TTGTGGCAGCAGGATAGACAGCACTCAGGGGGGACCGGGTCGGTCCTCGACTTGCGCATTCTGCC
131 TTGTGGTAGCAGGATAGACAGCACTCAGGGGGGACCGGG-CGGTCCTCGACTTGCGCATTCTGCC
** * *
16695328 TCTTCGACCGACTGAGCACCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGAGTTCATTCC
195 TCTTCGGTCGGCTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGAGTTCATTCC
*
16695393 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAAACAG
260 ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAAACAG
**
16695458 GACCAGCAGCAGGGTCGACA-ACACGTAG
325 GACCAGCAGCAGGAACGACAGACAC--AG
* ** * *
16695486 GAGGGGATCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGATAGGCTGAGCACCCGCACGC
1 G-GGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCGTCGATAGGCTGAACACCCGCACGC
* * * * * *
16695551 TCGTTTCGTGGG-TGGCTTAGGCATACGGAGTT-TTTTCCATGGCCTAAGCTCTAG-CCGGATCG
65 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA--GCCTAAGATC-AGACCGGATCG
* * * * *
16695613 AGGATTTTAGTTAGCAGGATTGGTAGCAGGATCGTAGCATGCAGAGGGGGACCGGGCTGATCC-C
127 AGGGTTGT-GGTAGCAGGA-TAG-A-CA-G--C--A-C-T-CAG-GGGGGACCGGGC-GGTCCTC
* * * *
16695677 CAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCTCCTGCATGCTCATTTTGTGGGTTGGCTTA
178 GA-CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTA
*
16695742 GGCATACATAGTTCATTCCATGTCTAAGC
242 GGCATAC-GAGTTCATTCCATGTCTAAGC
16695771 CCCAGCGGGA
Statistics
Matches: 525, Mismatches: 87, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
351 3 0.01
352 5 0.01
353 106 0.20
354 288 0.55
355 10 0.02
356 2 0.00
357 1 0.00
358 2 0.00
359 1 0.00
361 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
366 6 0.01
367 77 0.15
368 20 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (351 bp):
GGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCGTCGATAGGCTGAACACCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGATCGAGGG
TTGTGGTAGCAGGATAGACAGCACTCAGGGGGGACCGGGCGGTCCTCGACTTGCGCATTCTGCCT
CTTCGGTCGGCTGAGCACCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGAGTTCATTCCA
TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTGCGGAAACAGG
ACCAGCAGCAGGAACGACAGACACAG
Found at i:16695820 original size:12 final size:12
Alignment explanation
Indices: 16695792--16695834 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
16695782 CGAGGGTTGT
*
16695792 GGCAGCAAGACTA
1 GGCAGCAGGA-TA
16695805 -GCAGCAGGATA
1 GGCAGCAGGATA
16695816 GGCAGCAGGATA
1 GGCAGCAGGATA
16695828 GGCAGCA
1 GGCAGCA
16695835 TACAGAGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 2 0.07
12 26 0.93
ACGTcount: A:0.35, C:0.21, G:0.37, T:0.07
Consensus pattern (12 bp):
GGCAGCAGGATA
Found at i:16695975 original size:26 final size:26
Alignment explanation
Indices: 16695939--16695991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16695929 GTTGACTTAG
16695939 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16695965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16695991 G
1 G
16695992 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16696316 original size:158 final size:158
Alignment explanation
Indices: 16695965--16696319 Score: 363
Period size: 158 Copynumber: 2.2 Consensus size: 158
16695955 CCCAGTCTAA
* * *
16695965 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTTACGGGAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAAGGTTACGGGAGCAGGATCGGCA
* * * * * * * ** *
16696030 GCATGCAGGGGTCACCGGGCTGATCCCTGGCTTGCGTATTCTACCTCTCCGGCTGGCTAAGTGCC
66 GCACGCAGGGGGCACCGGACTGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTAAGCGCC
* * * *
16696095 CGCATGCCCATTTCGTGGGTTGGCTTAG
131 CGAACGCCCATTTCATGGGTTGACTTAG
* ** * * ** * *
16696123 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGGAGCGGGATTGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAAGGTTACGGGAGCAGGATCGGC
* * * * *
16696187 AGCACGCAGAGGGGGA-CGGATTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTCAGCG
65 AGCACGCAG-GGGGCACCGGACTGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTAAGCG
* * *
16696251 CCTGAACGCTCTTTTCATGGGTTGACTTAG
129 CCCGAACGCCCATTTCATGGGTTGACTTAG
*
16696281 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
16696320 TGAGCAATGC
Statistics
Matches: 155, Mismatches: 39, Indels: 6
0.77 0.19 0.03
Matches are distributed among these distances:
157 3 0.02
158 145 0.94
159 7 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAAGGTTACGGGAGCAGGATCGGCA
GCACGCAGGGGGCACCGGACTGATCCCCGACTTGCGCATTATACCTCTCCGGCCAGCTAAGCGCC
CGAACGCCCATTTCATGGGTTGACTTAG
Found at i:16696468 original size:26 final size:26
Alignment explanation
Indices: 16696439--16696491 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16696429 GTTAGCTTAG
*
16696439 GCATACAGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16696465 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16696491 G
1 G
16696492 ATCCGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16697020 original size:26 final size:26
Alignment explanation
Indices: 16696990--16697042 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16696980 GTTGGCTTAG
16696990 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16697016 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16697042 G
1 G
16697043 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16697751 original size:26 final size:26
Alignment explanation
Indices: 16697714--16697766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16697704 GTTGACTTAG
16697714 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16697740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16697766 G
1 G
16697767 ATCAGATCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16698131 original size:26 final size:26
Alignment explanation
Indices: 16698094--16698146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16698084 GTTGACTTAG
*
16698094 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16698120 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16698146 G
1 G
16698147 ATCAGACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16699422 original size:855 final size:855
Alignment explanation
Indices: 16697740--16699467 Score: 2133
Period size: 855 Copynumber: 2.0 Consensus size: 855
16697730 CCCAGTCTAA
*
16697740 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGCATCGAGGGTTGCGGCAGCCAGACCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGCATCGAGGGTTGCGGCAGCCAGACCAACA
* * * * *
16697805 GCAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCCTCGGTTAGTGCATTGTACCTTTCCGAT
66 GCAAGATCGACAGCACGCAGGGGGGATCGAGCCAATCCACGGTTAGCGCATTCTACCTCTCCGAT
* *
16697870 AGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTTCATGTCTA
131 AGACTGAGCGCCCGCACACTCGTATCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
* * * * * * * * *
16697935 AGCCCTAGCCGGATCGAGGGTTGTGGTAGTAGGACCGGTAGCGGGATCAACAGCATGCAGAAGGG
196 ACCCCCAGCCGGACCAAGGGTTGTGGCAGAAGGACCGGCAGCGAGATCAACAGCACGCAGAAGGG
* * * ** *
16698000 GATCGGGCTAATCCTCGGCTTGCGCATTATGCCTCTCCAGTCGGCCTATCTGATCGGCTGAGTGC
261 GATCGGGCTAACCCTCGGCTTGCGCATTATGCCTCTCCAGCCGGCCTATCCGATAAGCTGAGCGC
* * *
16698065 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAAG
326 CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATAAGGAGTTCATCCCCAATCTAAGCATACGAAG
*
16698130 TTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCAACAGTAGGATCGACAGCATGCAGAG
391 TTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCAACAATAGGATCGACAGCATGCAGAG
* * * * * * *
16698195 AGGACTGAGCCGATCCTCGGCTTACGCATTCTGCCTTTTCGACTGACTGAGTGCCCGCACGCCCG
456 AGGACTGAACCGATCCACAGCTTACGCATTCTACCTCTGCGACAGACTGAGTGCCCGCACGCCCG
** *
16698260 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGATGGTT
521 TTTCATCAGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCTGGACCGATGGTT
* * * **
16698325 GTGGCAACGGGACCGACAGCACGTAGAGGGGGACCGGGTTGATCCCCGGCTTGCGTATTATGCCT
586 GTGGCAACGGGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCT
* * ** * *
16698390 TTCCGGCTGGCTCAGCACCCGAACACTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCC
651 TTCCGGCTGACTCAGCACCCAAACACTAATTTCATGGGTTGACTTAGGCATACGAAATTCATTCC
* * * * *
16698455 ATGTCTAAGATCGGACCGAAACGAGGGTTGCTGCAGCAAGATTGACAGCACGTAGGGGGGACCGA
716 ATGTCTAAGATCAGACCGAAACAAGGGTTGCAGCAGCAAGATCGACAGCACGAAGGGGGGACCGA
* * * * * * * **
16698520 ACCGGTCCCTAGCTTGTGCATTCTACCTCCCCAGTCGGTTGAGCGCCCATACGCTTGTTTCATGG
781 ACCAGTCCCTAGCTTATGCATTCTACCTCCCCAGCCAGCTAAGCGCCCACACGCTCATTTCATGG
16698585 GTTGGCTTAG
846 GTTGGCTTAG
* * * * ***
16698595 GCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGATCGAGGGTTGCGGTAG-TAGGACCCGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGCATCGAGGGTTGCGGCAGCCA-GACCAAC
* * * *
16698659 AGC-AGAATCGATAGTATGCAGGGGGGATC-AGACCAATCCACGGCTTA-CGCATTCTGCCTCTC
65 AGCAAG-ATCGACAGCACGCAGGGGGGATCGAG-CCAATCCACGG-TTAGCGCATTCTACCTCTC
* * ** * * *
16698721 CGGTCGGTTGAGCAGCCC-CACGCTCGTATCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
127 CGATAGACTGAGC-GCCCGCACACTCGTATCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
* **
16698785 GTGTAACCCCCAGCCGGACCAAGGGTTGTGGCAGAAGGACCGGCAGCGAGATCGGCAGCACGCAG
191 GTCTAACCCCCAGCCGGACCAAGGGTTGTGGCAGAAGGACCGGCAGCGAGATCAACAGCACGCAG
*
16698850 -AGAGGGATCGGGCTGAACCCT-GGCTTGCGCATTATGCCTCTCC-GACCGGCCTCTCCGATAAG
256 AAG-GGGATCGGGCT-AACCCTCGGCTTGCGCATTATGCCTCTCCAG-CCGGCCTATCCGATAAG
*
16698912 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGC
318 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATAAGGAGTTCATCCCCAATCTAAGC
* ** **
16698977 AT--GTAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAATAGGATCGGTA
383 ATACG-A-AGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCAACAATAGGATCGACA
** * *
16699040 GCATGCAG-GAGGGA-TCGAACCGATCCACAGCTTGTGCATTCTATCTCTGC-AGCAGGCTGAGT
446 GCATGCAGAGA-GGACT-GAACCGATCCACAGCTTACGCATTCTACCTCTGCGA-CAGACTGAGT
*
16699102 GCCTGCACGCCCGTTTCATCAGTTGGCTTAGGCATAGGGAGTTAATTCCAAT-TCTAAGCCCCAG
508 GCCCGCACGCCCGTTTCATCAGTTGGCTTAGGCATAGGGAGTTAATTCC-ATGTCTAAGCCCCAG
* * *
16699166 -TCGGACCGATGGTTGTGGCAGCGGGATCGAGAGCACGCAGAGAGGGACCGGGTCGATCCCCGGC
572 CT-GGACCGATGGTTGTGGCAACGGGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCCCGGC
* ** *
16699230 TTGCACATTATGCCTTTTCGGCCT-ACTCAGTGCCCAAACGCTAATTTCATGGGTTGACTTAGGC
636 TTGCACATTATGCCTTTCCGG-CTGACTCAGCACCCAAACACTAATTTCATGGGTTGACTTAGGC
* * * * *
16699294 ATACGAAATTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGGATCGATAG
700 ATACGAAATTCATT-CCATGTCTAAGATCAGACCGAAACAAGGGTTGCAGCAGCAAGATCGACAG
* ** * * *
16699358 CACGAAGGAGGGGATCGGGCCAGTCCCTGGCTTATGCATTCTA-CTCTCCGGCCAGCTAAGCGCC
764 CACGAAGG-GGGGACCGAACCAGTCCCTAGCTTATGCATTCTACCTCCCCAGCCAGCTAAGCGCC
*
16699422 CGCACGCTCATTTCATGGGTTGGCTTAG
828 CACACGCTCATTTCATGGGTTGGCTTAG
*
16699450 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
16699468 ATGTGTAAGG
Statistics
Matches: 740, Mismatches: 115, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
853 1 0.00
854 14 0.02
855 678 0.92
856 47 0.06
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (855 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGCATCGAGGGTTGCGGCAGCCAGACCAACA
GCAAGATCGACAGCACGCAGGGGGGATCGAGCCAATCCACGGTTAGCGCATTCTACCTCTCCGAT
AGACTGAGCGCCCGCACACTCGTATCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
ACCCCCAGCCGGACCAAGGGTTGTGGCAGAAGGACCGGCAGCGAGATCAACAGCACGCAGAAGGG
GATCGGGCTAACCCTCGGCTTGCGCATTATGCCTCTCCAGCCGGCCTATCCGATAAGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATAAGGAGTTCATCCCCAATCTAAGCATACGAAG
TTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCAACAATAGGATCGACAGCATGCAGAG
AGGACTGAACCGATCCACAGCTTACGCATTCTACCTCTGCGACAGACTGAGTGCCCGCACGCCCG
TTTCATCAGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCTGGACCGATGGTT
GTGGCAACGGGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCCCGGCTTGCACATTATGCCT
TTCCGGCTGACTCAGCACCCAAACACTAATTTCATGGGTTGACTTAGGCATACGAAATTCATTCC
ATGTCTAAGATCAGACCGAAACAAGGGTTGCAGCAGCAAGATCGACAGCACGAAGGGGGGACCGA
ACCAGTCCCTAGCTTATGCATTCTACCTCCCCAGCCAGCTAAGCGCCCACACGCTCATTTCATGG
GTTGGCTTAG
Found at i:16699742 original size:208 final size:208
Alignment explanation
Indices: 16699341--16699722 Score: 556
Period size: 208 Copynumber: 1.8 Consensus size: 208
16699331 CAAGGGTTGC
* *
16699341 AGCAGTAGGATCGATAGCACGAAGGAGGGGATCGGGCCAGTCCCTGGCTTATGCATTCTACTCTC
1 AGCAGTAGGATCGACAGCACGAAGGAGGGGATCGGGCCAATCCCTGGCTTATGCATTCTACTCTC
* * * * *
16699406 CGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATG
66 AGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCACG
* * * *
16699471 TGTAAGGATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACAGCAGCAGGAC
131 TCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACAGCAGCAGGAC
16699536 CAGTAGCAGGACT
196 CAGTAGCAGGACT
* *
16699549 AGCAGTAGGATCGACAGCACGCAA-G-GGGGATCGGGTCAATCCCTGGCTTATGCATTCTGCCTC
1 AGCAGTAGGATCGACAGCACG-AAGGAGGGGATCGGGCCAATCCCTGGCTTATGCATTCT-ACTC
* *
16699612 TCAGGCC-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
64 TCAGGCCAG-CTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
*
16699676 CCGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCTA-ACTGGAC
128 ACGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC-AGACTGGAC
16699723 TGAGGGTTGT
Statistics
Matches: 154, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
207 32 0.21
208 119 0.77
209 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (208 bp):
AGCAGTAGGATCGACAGCACGAAGGAGGGGATCGGGCCAATCCCTGGCTTATGCATTCTACTCTC
AGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCACG
TCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTACAGCAGCAGGAC
CAGTAGCAGGACT
Found at i:16699810 original size:183 final size:184
Alignment explanation
Indices: 16699555--16699894 Score: 452
Period size: 183 Copynumber: 1.9 Consensus size: 184
16699545 GACTAGCAGT
* * * * *
16699555 AGGATCGACAGCACGCAAGGGGGATCGGGTCAATCCCTGGCTTATGCATTCTGCCTCTCAGGCCG
1 AGGATCGACAGCACGCAAGGGGGAACGGGCCAATCCCTGACTTACGCATTCTGCCTCTCAGACCG
* * * *
16699620 ACTGAGCGCCCGCACG-CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCGTCTAA
66 ACTGAGCGCCCGCACGTC-CATTACATGGGTTGACTTAGGCATACAGAGTTCATCCCACGTCTAA
16699684 GCATACAAAGTTCATTCCCAGTCTAAGATCTAACTGGACTGAGGGTTGTGGTAGC
130 GCATACAAAGTTCATTCCCAGTCTAAGATCTAACTGGACTGAGGGTTGTGGTAGC
* * * *
16699739 AGGATCGACAGTACGC-AGGGGGAACGGGCCAATCCTCT-ACTTACGCATTCTGCCTTTCTGATC
1 AGGATCGACAGCACGCAAGGGGGAACGGGCCAATCC-CTGACTTACGCATTCTGCCTCTCAGACC
* * * * * *
16699802 GGCTGAGCGCCTGCACGTCCGTTACATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
65 GACTGAGCGCCCGCACGTCCATTACATGGGTTGACTTAGGCATACAGAGTTCATCCCACGTCTAA
**
16699867 GCATACGGAGTTCATTCCCAGTCTAAGA
130 GCATACAAAGTTCATTCCCAGTCTAAGA
16699895 GTTTGAGCCA
Statistics
Matches: 133, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 115 0.86
184 18 0.14
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (184 bp):
AGGATCGACAGCACGCAAGGGGGAACGGGCCAATCCCTGACTTACGCATTCTGCCTCTCAGACCG
ACTGAGCGCCCGCACGTCCATTACATGGGTTGACTTAGGCATACAGAGTTCATCCCACGTCTAAG
CATACAAAGTTCATTCCCAGTCTAAGATCTAACTGGACTGAGGGTTGTGGTAGC
Found at i:16699877 original size:26 final size:26
Alignment explanation
Indices: 16699841--16699893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16699831 GTTGGCTTAG
16699841 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16699867 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16699893 G
1 G
16699894 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16700623 original size:26 final size:26
Alignment explanation
Indices: 16700572--16700624 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16700562 GTTGACTTAG
*
16700572 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
16700598 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
16700624 G
1 G
16700625 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:16700956 original size:159 final size:159
Alignment explanation
Indices: 16700739--16701103 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 159
16700729 TGCACGCCCG
* * * *
16700739 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGACGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACAAGCCAGACCGACGGTT
* ** * *
16700804 GTAGTAGCGGGACCGACAGCACACAGAGGG-GGATCGGGGCAATCCTCGGCTTGCGCATTATGCC
66 GCAGTAGCAAGACCGACAGCACACAG-GGGTGGATCGGGCCAATCCCCGGCTTGCGCATTATGCC
16700868 TCTCCGGCATGCTCAATGCGCACACATTCA
130 TCTCCGGCATGCTCAATGCGCACACATTCA
* ** *
16700898 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATAAGACTGGACCGAGGG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACAAG-CCAGACCGACGG
* * * ** * *
16700961 TTGCGGTAGCAAGATCGATAGCACGTAGGGGTGGATCGGGCCGATCCCCGGCTTGCGCATTCTGC
64 TTGCAGTAGCAAGACCGACAGCACACAGGGGTGGATCGGGCCAATCCCCGGCTTGCGCATTATGC
* * * ** *
16701026 CTCTCCGG-TTGGCT-GA-GCGCCTGCACGCTCG
129 CTCTCCGGCAT-GCTCAATGCG-C-ACACATTCA
* * *
16701057 TTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTTCATGTCTAAGCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16701104 TACGGAGTTC
Statistics
Matches: 169, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 10 0.06
159 152 0.90
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACAAGCCAGACCGACGGTT
GCAGTAGCAAGACCGACAGCACACAGGGGTGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCT
CTCCGGCATGCTCAATGCGCACACATTCA
Done.