Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 141 of 402
Found at i:16701124 original size:26 final size:26
Alignment explanation
Indices: 16701075--16701127 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16701065 GTTGGCTTAG
* *
16701075 GCATACGGTGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16701101 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16701127 G
1 G
16701128 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16701248 original size:184 final size:185
Alignment explanation
Indices: 16700916--16701286 Score: 548
Period size: 184 Copynumber: 2.0 Consensus size: 185
16700906 GTTGACTTAG
** * *
16700916 GCATACGGAGTTCATTCCCAGTCTAAGATAAGACTGGACCGAGGGTTGCGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * ** *
16700981 GCACGTAGGGGTGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGC
66 GCACGCAGGGGTGGACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
* *
16701046 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATT-TCATGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCT-ATGTCTAA
* * *
16701101 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
* *
16701166 GCACGCAGGGG-GGACCAGGCCAATCCTCAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCAC
66 GCACGCAGGGGTGGACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
16701230 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAA
16701285 GC
1 GC
16701287 CCCAATCGGA
Statistics
Matches: 166, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
184 97 0.58
185 69 0.42
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
GCACGCAGGGGTGGACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAA
Found at i:16703576 original size:26 final size:26
Alignment explanation
Indices: 16703546--16703598 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16703536 GTTGGCTTAG
16703546 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
16703572 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16703598 G
1 G
16703599 ATCATACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16703773 original size:26 final size:26
Alignment explanation
Indices: 16703743--16703795 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16703733 GTTGGCTTAG
*
16703743 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16703769 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16703795 G
1 G
16703796 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16703794 original size:197 final size:196
Alignment explanation
Indices: 16703449--16703961 Score: 752
Period size: 197 Copynumber: 2.6 Consensus size: 196
16703439 CAGTAGGATA
* * * * * * *
16703449 GACAGCACGTAGGGGGGATCGGG-TCGATCCTTGGCTTGCGCATTCTGCCT-TTTCGACTGGCTA
1 GACAGCACGTAGGGGGGATCGGGCT-GATCCTCGACTTGCGCATTCTGCCTCTCT-GGCCGACTG
*
16703512 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA
64 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
16703577 CGAAGTTCATTCCCAGTCTAAGATC-ATACTGGATCGAGGGTTGCGACAGCAGGACCAGTAGCAA
129 CGAAGTTCATTCCCAGTCTAAGATCGA-ACTGGATCGAGGGTTGCGACAGCAGGACCAGTAGCAA
16703641 GATC
193 GATC
*
16703645 GACAGCACGCAAGGGGGGATCGGGCTTG-TCCTCGACTTGCGCATTCTGCCTCTCTGGCCGACTG
1 GACAGCACG-TAGGGGGGATCGGGC-TGATCCTCGACTTGCGCATTCTGCCTCTCTGGCCGACTG
*
16703709 AGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
64 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
** *
16703774 CGAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGCAGGACCAGTAGCATG
129 CGAAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGACAGCAGGACCAGTAGCAAG
16703839 ATC
194 ATC
* * * *
16703842 -AGCAGCACGTAGGGGGGACCGGGC-GATCCCCGACTTGCGCATTTTGCCTCTCT-GCCGATTGA
1 GA-CAGCACGTAGGGGGGATCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCTGGCCGACTGA
* *
16703904 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
16703962 TGCCCCAGTC
Statistics
Matches: 289, Mismatches: 21, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
194 64 0.22
195 25 0.09
196 23 0.08
197 172 0.60
198 4 0.01
199 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (196 bp):
GACAGCACGTAGGGGGGATCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAG
CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
AAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGACAGCAGGACCAGTAGCAAGAT
C
Found at i:16704124 original size:26 final size:26
Alignment explanation
Indices: 16704094--16704146 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16704084 GTTGACTTAG
*
16704094 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
*
16704120 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
16704146 G
1 G
16704147 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:16704845 original size:26 final size:26
Alignment explanation
Indices: 16704795--16704847 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16704785 GTTGGCTTAG
*
16704795 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16704821 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16704847 G
1 G
16704848 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16705013 original size:194 final size:196
Alignment explanation
Indices: 16704491--16705016 Score: 768
Period size: 196 Copynumber: 2.7 Consensus size: 196
16704481 GAGGGTTTTG
* * * * *
16704491 GTAGTAGGATCGACAGCACGTAGGGGGGATCAGGCTGGTCCTCGACTTGCGCATTCTACCTTTCC
1 GTAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGGTCCCCGACTTGCGCATTCTGCCTCTCC
* * * * * * * *
16704556 GACCGGCTAAGCGCCCGTACGCTCGTTTCATCGGTTGGTTTAGGCATACAGAGTTCATTTCATGT
66 GACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
*
16704621 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGACC
131 CTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGACC
16704686 A
196 A
* * *
16704687 GTAGCAAGATCGACAGCACGTAGGGGGGATCGGGCTGGTCCCCGGCTTGCACATTCTGCCTCTCC
1 GTAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGGTCCCCGACTTGCGCATTCTGCCTCTCC
* * *
16704752 GGCCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
16704817 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGA-GGTTGCGGTAGTAGGACC
131 CTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGACC
16704881 A
196 A
* * * *
16704882 GTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
1 GTAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGGTCCCCGACTTGCGCATTCTGCCTCTCC
* *
16704947 -ATCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
16705011 CTAAGC
131 CTAAGC
16705017 CCCAGTCGGA
Statistics
Matches: 294, Mismatches: 36, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
194 65 0.22
195 75 0.26
196 154 0.52
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (196 bp):
GTAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGGTCCCCGACTTGCGCATTCTGCCTCTCC
GACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGACC
A
Found at i:16705177 original size:26 final size:26
Alignment explanation
Indices: 16705147--16705199 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16705137 GTTGACTTAG
* *
16705147 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16705173 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16705199 G
1 G
16705200 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16706281 original size:26 final size:26
Alignment explanation
Indices: 16706245--16706297 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16706235 GTTGACTTAG
16706245 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16706271 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16706297 G
1 G
16706298 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16706734 original size:158 final size:155
Alignment explanation
Indices: 16706271--16706770 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 155
16706261 CCCAGTCTAA
* *
16706271 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-ACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
16706336 GCACGCAAGAGGGACCGAGTCGATCCCCGACTTGTGCATTGTGTCTCTCCGACCGGCTGAGCGCC
65 GCACGCAAGGGGGATCGAGTCGAT-CCCGACTTGT-CATTATGCCTCTCCGACCGGCTGAGCGCC
* *
16706401 CGCACACCCGTTTCGTGGGTTGGCTTAG
128 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * *
16706429 GCATAGGGAGTT--TT-CCATGTCTAAGCCCTAGTGGC-ACCGAGGGTTGTGGCAGCAGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AG-ACCAACCGAGGGTTGCGACAGCAGGATC-G
* * * * * * * *
16706489 GCAGCATGCAAAAGGGGATCGGGCCGATCCCTAGCTTGCTCATTATGCCTCTCCGACCAGCTCAG
62 ACAGCACGC-AAGGGGGATCGAGTCGATCCCGA-CTTG-TCATTATGCCTCTCCGACCGGCTGAG
* * * * * *
16706554 CGCCCGTACGTTCATTTAGTGGGTTGACTGAG
124 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
16706586 GCATACAGAGTTCATTCCCAGTCTTAGATCAGACCAAACCGAGGGTTGCGATAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACCGAGGGTTGCGACAGCAGGATCGACA
* * * * **
16706651 GCACGCAGGGGGGATCGAGTCGGTCCTCGACTTGTACATTCTGCCTCTTCGGTCGGCTGAGCGCC
65 GCACGCAAGGGGGATCGAGTCGATCC-CGACTTGT-CATTATGCCTCTCCGACCGGCTGAGCGCC
16706716 CGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16706744 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16706771 CATACGGAGT
Statistics
Matches: 263, Mismatches: 63, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
155 4 0.02
156 41 0.16
157 79 0.30
158 99 0.38
159 36 0.14
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAAGGGGGATCGAGTCGATCCCGACTTGTCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16706794 original size:26 final size:26
Alignment explanation
Indices: 16706744--16706796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16706734 GTTGGCTTAG
*
16706744 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
16706770 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
16706796 G
1 G
16706797 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:16707411 original size:158 final size:156
Alignment explanation
Indices: 16707097--16707619 Score: 396
Period size: 159 Copynumber: 3.3 Consensus size: 156
16707087 TTGAGTGCCT
* * * * * ** *
16707097 GCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCCA-GTTTAAG-CATA-CCGG
1 GCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCT-CGCCCCAGCCAG
* * * *
16707159 ACCAAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGGGTACCGGGCCGATCTTCGACTTGTGCA
64 ACCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGACCGGGCCGATCTACGACTTGCGCA
* * **
16707224 TTCTGCCTCTTCGGCCGGCTGAGTGCCC
129 TTCTGCCTCTTCGACCGGCTCAGCACCC
* *
16707252 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTCGCCCCAGCCAGAC
1 GCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTCGCCCCAGCCAGAC
* * * *
16707317 CGAGGGTTGTGGCAGCGGGATCGG-ATGCACGCAGAGGGGGATCGGGCCGATC-ACAGACTTGCG
66 CAAGGGTTGCGGCAGCAGGATCGGTA-GCACGC--AGGGGGACCGGGCCGATCTAC-GACTTGCG
16707380 CATTAC-GCCTCTTCGACCGGCTCAGCACCC
127 CATT-CTGCCTCTTCGACCGGCTCAGCACCC
* * * ** **
16707410 GCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACTG
1 GCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCT-CGCCCCAG-CCA
* * * ** * * * * * * **
16707473 GATCGAGGGTTACGATAGTAGGATCGATAGCGCGTAGGGCGGGACCGAGTCGATCCCCGACTTGC
63 GACCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCA-GG-GGGACCGGGCCGATCTACGACTTGC
* * * * * * ***
16707538 GCATTCTACCTCTCCTATCGGCTGAACGTTC
126 GCATTCTGCCTCTTCGACCGGCTCAGCACCC
* * *
16707569 GTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
1 GCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
16707620 AAGCATACGG
Statistics
Matches: 294, Mismatches: 57, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
154 4 0.01
155 44 0.15
156 31 0.11
157 3 0.01
158 98 0.33
159 111 0.38
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
GCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTCGCCCCAGCCAGAC
CAAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGACCGGGCCGATCTACGACTTGCGCATT
CTGCCTCTTCGACCGGCTCAGCACCC
Found at i:16707625 original size:26 final size:26
Alignment explanation
Indices: 16707596--16707648 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16707586 GTTGGCTTAG
16707596 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16707622 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16707648 G
1 G
16707649 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16708368 original size:26 final size:26
Alignment explanation
Indices: 16708318--16708370 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16708308 GTTGACTTAG
*
16708318 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* * *
16708344 GCATATGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
16708370 G
1 G
16708371 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:16708676 original size:159 final size:160
Alignment explanation
Indices: 16708489--16708850 Score: 369
Period size: 159 Copynumber: 2.3 Consensus size: 160
16708479 ACCCGTTTTG
* * * * **
16708489 TGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCC-AGCC-AGACCGAGGGTTGTG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCGA-CCGA-ACAGAGCGTTGCA
* * * * *
16708552 GCAGCGGGACCGATAGCACGCAGAGGGGGACCAGGCCAATCCCTGACTT-GTACATTATGCCTCT
64 ACAGCAGCACCGACAGCACGCAG-GGGGGACCAGGCCAATCCCCGACTTAG-ACATTATGCCTCT
* * * *
16708616 CCGGTCTGCTC-AG-CGC-CTGTACGTTCGTTTCA
127 CCGATCGGCTCAAGCCGCAC-GCACGCTCGTTTCA
* * **
16708648 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTCAGATCCGACCGAACAGAGCGTTGCAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCGACCGAACAGAGCGTTGCAA
* * * * * *
16708712 CAGTAGCATCGACAGCACGTAGGGGGGACCAGGCCGATCCCCGACTTAGGCATTCTGCCTCTCCG
65 CAGCAGCACCGACAGCACGCAGGGGGGACCAGGCCAATCCCCGACTTAGACATTATGCCTCTCCG
*
16708777 ATCGGCTCAGAGCCCGCACGCACGCTCGTTTCG
130 ATCGGCTCA-AG-CCGCACGCACGCTCGTTTCA
16708810 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16708851 ATACGGAGTT
Statistics
Matches: 164, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
158 43 0.26
159 62 0.38
160 7 0.04
161 3 0.02
162 48 0.29
163 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (160 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCGACCGAACAGAGCGTTGCAAC
AGCAGCACCGACAGCACGCAGGGGGGACCAGGCCAATCCCCGACTTAGACATTATGCCTCTCCGA
TCGGCTCAAGCCGCACGCACGCTCGTTTCA
Found at i:16708859 original size:26 final size:26
Alignment explanation
Indices: 16708823--16708875 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16708813 GTTGGCTTAG
16708823 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16708849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16708875 G
1 G
16708876 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16709195 original size:26 final size:26
Alignment explanation
Indices: 16709165--16709215 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16709155 GTTGACTTAG
16709165 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16709191 GCATATGGAGTTCATTCCCATTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
16709216 GGATTGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16709532 original size:342 final size:342
Alignment explanation
Indices: 16708796--16709533 Score: 889
Period size: 342 Copynumber: 2.2 Consensus size: 342
16708786 GAGCCCGCAC
* *
16708796 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAGCATACGGAGT
* * *
16708860 TCATTCCCAGTCTAAGATTGGATCGGACCGAAGGTTGCAGCAGCAGGATCAGCAGCACACAGGGG
65 TCATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTACAGCAGCAGGATCAGCAGCACACAGGGG
* * * *
16708925 GACCGAACGGATCCCCGGCTTGCACATTCTGCATCTCTGGCCGACTGAGCACCCGCGCGCTCATT
130 GACCGAACGAATCCCCGGCTTGCACATTCTGCATCTCTGGCAGACTGAGCACCCGCACGCCCATT
* ** *
16708990 TTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGT
195 TTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAAATGAGGGTTGT
* * * * * **
16709055 GGTAGTAGGATCGACAGCATGAAAAGGGGGATTGAGCTGATCCCTGAGTTACGCATTATTCCTCT
260 GGCAGGAGGACCGACAGCACGAAAAGGGGGATCGAGCTGATCCCTGAGTTACGCATTACGCCTCT
* *
16709120 CCGGTTGACTGAGCGCCT
325 CCGGCTGACTCAGCGCCT
* * ** *
16709138 GTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGCATACGGAGTT
* * * * * * *
16709203 CATTCCCATTCTAGGATTGGACCAGATCGAGGGTTAC-GACAGTAGGATC-GATAGCACGCAGGG
66 CATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTACAG-CAGCAGGATCAG-CAGCACACAGGG
* * * * *
16709266 GGATCGAGCTAATCCCCGGCTTG-AGCATTCTGCCTCTCTGGCAGGCTGAG-AGCCCGCACGCCC
129 GGACCGAACGAATCCCCGGCTTGCA-CATTCTGCATCTCTGGCAGACTGAGCA-CCCGCACGCCC
* *
16709329 ATTTAT-TGGGTTGGCTTCGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAAATGAGGG
192 ATTT-TGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAAATGAGGG
* * * *
16709393 TTGTGGCAGCGA-GACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTG-GCTTGCGCATTAC
256 TTGTGGCAG-GAGGACCGACAGCACGAAAAGGGGGATCGAGCTGATCCCTGAG-TTACGCATTAC
** * *
16709456 GCCTCTTTGGCTGGCTCAGTGCCT
319 GCCTCTCCGGCTGACTCAGCGCCT
* *
16709480 GCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCATAGTCTAAG
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAG
16709534 ATCGAATCAG
Statistics
Matches: 333, Mismatches: 55, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
341 6 0.02
342 325 0.98
343 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (342 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTACAGCAGCAGGATCAGCAGCACACAGGGGG
ACCGAACGAATCCCCGGCTTGCACATTCTGCATCTCTGGCAGACTGAGCACCCGCACGCCCATTT
TGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAAATGAGGGTTGTG
GCAGGAGGACCGACAGCACGAAAAGGGGGATCGAGCTGATCCCTGAGTTACGCATTACGCCTCTC
CGGCTGACTCAGCGCCT
Found at i:16709551 original size:159 final size:159
Alignment explanation
Indices: 16709255--16710191 Score: 476
Period size: 159 Copynumber: 5.8 Consensus size: 159
16709245 TAGGATCGAT
* * * * * * * *
16709255 AGCACGC--AGGGGGATCGAGCTAATCCCCGGCTTGAGCATTCTGCCTCTCTGGCAGGCTGAGAG
1 AGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCTGGCTCAGTG
* * * * * * * ** * *
16709318 CCCGCACGCCCATTT-ATTGGGTTGGCTTCGGTATAGGGAGTTCATTCCAT-GTCTAAGCCCCAG
66 CCTGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAGATCGAA
* * **
16709381 CCAAAATGAGGGTTGTGGCAGCGAGACCGAC
129 TCAGACGGAGGGTTGTGGCAGCGAGACCGAC
16709412 AGCACGCAGAGGGGGATCGGGCTGATCC-CTGGCTTGCGCATTAC-GCCTCTTTGGCTGGCTCAG
1 AGCACGCAGAGGGGGATCGGGCTGATCCTC-GGCTTGCGCATT-CTGCCTCTTTGGCTGGCTCAG
* *
16709475 TGCCTGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCATAGTCTAAGATCGAA
64 TGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGATCGAA
* * ** *
16709540 TCAGACGGAGGGTTGCGACAGTAAGATCGAC
129 TCAGACGGAGGGTTGTGGCAGCGAGACCGAC
* * * * * * * * * *
16709571 AGCATGCAG-GGGGGAACCAGG-TCGATCCCCGACTTGCACATTCTGCCTCTCT-GATCGGTTGA
1 AGCACGCAGAGGGGG-ATCGGGCT-GATCCTCGGCTTGCGCATTCTGCCTCTTTGGCT-GGCTCA
* * **
16709633 CTG-CTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
63 GTGCCT-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAG-AT-
** * * * *
16709697 CGAAGGTCATTCCCAGTCTAAGATTGGATCGG-ACCGAAGGTTA-CGAC
125 CGAA--TCA--GAC-G--GAGGGTT-G-T-GGCAGCG-A-G--ACCGAC
* * * *
16709744 AGCAAGATCGACAGCACAAGAGGGATCGGG-TCGATCCTCGACTTGCGTATTCTGCCTCTCTTGT
1 AGC---A-CG-CAG----AGGGGGATCGGGCT-GATCCTCGGCTTGCGCATTCTGCCTCT-TTGG
* * * * * * *
16709808 C-AGCTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GCC
55 CTGGCTCAGTGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTC
** * * * *
16709871 TAAGCCCCAATCAGACCGAGGGTTGTGGCAGTGGGACCGAC
119 TAAGATCGAATCAGACGGAGGGTTGTGGCAGCGAGACCGAC
* * * * * *
16709912 AGCACGTAGAGAGCGA-CTGGGCTGATCCTCGGCTTGCGCATTATGCCTCTTCGG-TCGGCTCAA
1 AGCACGCAGAGGGGGATC-GGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCT-GGCTCAG
* * * * ** *
16709975 CGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT-TAG
64 TGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGATCGA-
* * * * *
16710039 ACCAGACTGAGGGTTGTGGCAG-TAGGATCGAT
128 ATCAGACGGAGGGTTGTGGCAGCGA-GACCGAC
* * * * * * * * *
16710071 AGCACGTA-AGGGGGATTGGGCCGATCCTCAGTTTACGCATTCTACCTCTATGGCTGGCTAAGTG
1 AGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCTGGCTCAGTG
* * * *
16710135 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
66 CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAG
16710192 CATACGTAGT
Statistics
Matches: 594, Mismatches: 132, Indels: 107
0.71 0.16 0.13
Matches are distributed among these distances:
157 7 0.01
158 109 0.18
159 322 0.54
160 6 0.01
161 4 0.01
163 5 0.01
164 2 0.00
165 2 0.00
166 1 0.00
167 1 0.00
168 11 0.02
169 2 0.00
170 3 0.01
171 5 0.01
172 2 0.00
173 11 0.02
174 1 0.00
176 2 0.00
177 1 0.00
178 6 0.01
180 3 0.01
182 80 0.13
183 8 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCTGGCTCAGTG
CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAAGATCGAATC
AGACGGAGGGTTGTGGCAGCGAGACCGAC
Found at i:16709696 original size:26 final size:26
Alignment explanation
Indices: 16709666--16709718 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16709656 GTTGACTTAG
* *
16709666 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
*
16709692 GCATACGAAGGTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
16709718 G
1 G
16709719 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:16709834 original size:182 final size:184
Alignment explanation
Indices: 16709507--16709862 Score: 434
Period size: 182 Copynumber: 1.9 Consensus size: 184
16709497 GTTGACTTAT
* * * * * * *
16709507 GCATACGGAGTTCATTCATAGTCTAAGATCGAATCAGACGGAGGGTTGCGACAGTAAGATCGACA
1 GCATACGAAGGTCATTCACAGTCTAAGATCGAATCAGACCGAAGGTTACGACAGCAAGATCGACA
* * * *
16709572 GCATGCAGGGGGGAACCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCTGATCGGTTGACTGC
66 GCA-GCAAGAGGGAACCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCTGATCAGCTGACTGC
*
16709637 TCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
130 TCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
16709692 GCATACGAAGGTCATTCCCAGTCTAAGATTGGATCGGACCGAAGGTTACGACAGCAAGATCGACA
1 GCATACGAAGGTCATTCACAGTCTAAGATCGAATCAGACCGAAGGTTACGACAGCAAGATCGACA
* * * **
16709757 GCA-CAAGAGGG-ATCGGGTCGATCCTCGACTTGCGTATTCTGCCTCTCTTG-TCAGCTGAGC-G
66 GCAGCAAGAGGGAACCAGGTCGATCCCCGACTTGCACATTCTGCCTCTC-TGATCAGCTGA-CTG
* *
16709818 C-CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
129 CTC-GCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
16709863 TCCATGCCTA
Statistics
Matches: 145, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
181 1 0.01
182 78 0.54
183 9 0.06
185 57 0.39
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGAAGGTCATTCACAGTCTAAGATCGAATCAGACCGAAGGTTACGACAGCAAGATCGACA
GCAGCAAGAGGGAACCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCTGATCAGCTGACTGCT
CGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:16710000 original size:500 final size:500
Alignment explanation
Indices: 16709140--16710238 Score: 1302
Period size: 500 Copynumber: 2.2 Consensus size: 500
16709130 GAGCGCCTGT
* *
16709140 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
* * * * * * * * *
16709205 TTCCCATTCTAGGATTGGACCAGATCGAGGGTTACGACAGTAGGATCGATAGCACGCAGGGGGAT
66 TTCCCAGTCTAAGATTGGACCAGACCGAAGGTTACGACAGCAAGATCGACAGCACGAAGAGGGAT
*
16709270 CGAGCTAATCCCCGGCTTGAGCATTCTGCCTCTCTGGCAGGCTGAGAGCCCGCACGCCCATTTAT
131 CGAGCTAATCCCCGACTTGAGCATTCTGCCTCTCTGGCAGGCTGAGAGCCCGCACGCCCATTTAT
* * * * *
16709335 TGGGTTGGCTTCGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAAATGAGGGTTGTGGC
196 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAACCAAAACGAGGGTTGTGGC
* * *
16709400 AGCGAGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTACGCCTCTTTG
261 AGCGAGACCGACAGCACGCAGAGAGCGATCGGGCTGATCCCTGGCTTGCGCATTACGCCTCTTCG
** * *
16709465 GCTGGCTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCATAGTC
326 GCTGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCACAGTC
* * * *
16709530 TAAGATCGA-ATCAGACGGAGGGTTGCGACAGTAAGATCGACAGCATGCAGGGGGGAACCAGGTC
391 TAAGAT-GAGACCAGACGGAGGGTTGCGACAGTAAGATCGACAGCACGCAAGGGGG-ACCAGGCC
* * * * * * *
16709594 GATCCCC-GACTTGCACATTCTGCCTCTCT-GATCGGTTGACTGCTCGC
454 GATCCCCAG-CTTACACATTCTACCTCTATGGCT-GGCTAACTGCCCGC
*
16709641 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGGTCA
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
* *
16709706 TTCCCAGTCTAAGATTGGATCGGACCGAAGGTTACGACAGCAAGATCGACAGCAC-AAGAGGGAT
66 TTCCCAGTCTAAGATTGGACCAGACCGAAGGTTACGACAGCAAGATCGACAGCACGAAGAGGGAT
* * * * * * * * *
16709770 CG-GGTCGATCCTCGACTTGCGTATTCTGCCTCTCTTGTCA-GCTGAGCGCCTGCACGCCCGTTT
131 CGAGCT-AATCCCCGACTTGAGCATTCTGCCTCTC-TGGCAGGCTGAGAGCCCGCACGCCCATTT
* * *
16709833 CA-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAATCAGACCGAGGGTTGT
194 -ATTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAACCAAAACGAGGGTTGT
* * * *
16709897 GGCAGTGGGACCGACAGCACGTAGAGAGCGA-CTGGGCTGAT-CCTCGGCTTGCGCATTATGCCT
258 GGCAGCGAGACCGACAGCACGCAGAGAGCGATC-GGGCTGATCCCT-GGCTTGCGCATTACGCCT
* *
16709960 CTTCGG-TCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTC
321 CTTCGGCT-GGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTC
* * * * * * * * ***
16710024 CCAGTCTAAGATTAGACCAGACTGAGGGTTGTGGCAGTAGGATCGATAGCACGTAAGGGGGATTG
385 ACAGTCTAAGATGAGACCAGACGGAGGGTTGCGACAGTAAGATCGACAGCACGCAAGGGGGACCA
* * * * *
16710089 GGCCGATCCTCAGTTTACGCATTCTACCTCTATGGCTGGCTAAGTGCCCGT
450 GGCCGATCCCCAGCTTACACATTCTACCTCTATGGCTGGCTAACTGCCCGC
* * * *
16710140 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGTAGTTC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTC
** * *
16710204 ATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTA
65 ATTCCCAGTCTAAGATTGGACCAGACCGAAGGTTA
16710239 TGGTAGCAGG
Statistics
Matches: 505, Mismatches: 83, Indels: 22
0.83 0.14 0.04
Matches are distributed among these distances:
498 3 0.01
499 126 0.25
500 263 0.52
501 113 0.22
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (500 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATTGGACCAGACCGAAGGTTACGACAGCAAGATCGACAGCACGAAGAGGGAT
CGAGCTAATCCCCGACTTGAGCATTCTGCCTCTCTGGCAGGCTGAGAGCCCGCACGCCCATTTAT
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAACCAAAACGAGGGTTGTGGC
AGCGAGACCGACAGCACGCAGAGAGCGATCGGGCTGATCCCTGGCTTGCGCATTACGCCTCTTCG
GCTGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCACAGTC
TAAGATGAGACCAGACGGAGGGTTGCGACAGTAAGATCGACAGCACGCAAGGGGGACCAGGCCGA
TCCCCAGCTTACACATTCTACCTCTATGGCTGGCTAACTGCCCGC
Found at i:16710194 original size:26 final size:26
Alignment explanation
Indices: 16710165--16710217 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16710155 GTTGGCTTAG
16710165 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16710191 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16710217 G
1 G
16710218 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16710590 original size:26 final size:26
Alignment explanation
Indices: 16710542--16710597 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16710532 TGGGTTGACT
*
16710542 TAAGCATACAGAGTTCAACCCCAGTG
1 TAAGCATACAGAGTTCAACCCCAGTC
**
16710568 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCAACCCCAGTC
16710594 TAAG
1 TAAG
16710598 ACCAAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACAGAGTTCAACCCCAGTC
Found at i:16718328 original size:26 final size:26
Alignment explanation
Indices: 16718292--16718341 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16718282 GTTGACTTAG
16718292 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16718318 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
16718342 CAGATTGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16718875 original size:26 final size:26
Alignment explanation
Indices: 16718845--16718897 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16718835 GTTGACTTAG
16718845 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
16718871 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
16718897 G
1 G
16718898 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16719223 original size:26 final size:26
Alignment explanation
Indices: 16719187--16719239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16719177 GTTGGCTTAG
16719187 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16719213 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16719239 G
1 G
16719240 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16719923 original size:26 final size:26
Alignment explanation
Indices: 16719894--16719949 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16719884 TGGGTTAACT
16719894 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
16719920 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
16719946 TAAG
1 TAAG
16719950 ATCGAATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:16720420 original size:26 final size:26
Alignment explanation
Indices: 16720371--16720423 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16720361 GTTGGCTTAG
* **
16720371 GCATACGGAGTTAATTTCGTGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
*
16720397 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
16720423 G
1 G
16720424 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:16720788 original size:26 final size:26
Alignment explanation
Indices: 16720752--16720804 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16720742 GTTGACTTAG
*
16720752 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16720778 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16720804 G
1 G
16720805 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16721283 original size:26 final size:26
Alignment explanation
Indices: 16721253--16721305 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16721243 GTTGGCTTAG
*
16721253 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16721279 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16721305 G
1 G
16721306 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16721664 original size:26 final size:26
Alignment explanation
Indices: 16721635--16721687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16721625 GTTGACTTAG
16721635 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16721661 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16721687 G
1 G
16721688 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16722289 original size:26 final size:26
Alignment explanation
Indices: 16722259--16722311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16722249 GTTGGCTTAG
*
16722259 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
16722285 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
16722311 G
1 G
16722312 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16722506 original size:26 final size:26
Alignment explanation
Indices: 16722470--16722521 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16722460 TGACTTAGGC
16722470 ATATGGAGTTCATCCCCAATCTAAGA
1 ATATGGAGTTCATCCCCAATCTAAGA
* *
16722496 ATATGGAGTTCATTCCCAGTCTAAGA
1 ATATGGAGTTCATCCCCAATCTAAGA
16722522 TCAGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATATGGAGTTCATCCCCAATCTAAGA
Found at i:16724898 original size:26 final size:26
Alignment explanation
Indices: 16724862--16724914 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16724852 GTTGGCTTAG
*
16724862 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16724888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16724914 G
1 G
16724915 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16725083 original size:26 final size:26
Alignment explanation
Indices: 16725047--16725099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16725037 GTTGGCTTAG
16725047 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16725073 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16725099 G
1 G
16725100 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16725458 original size:26 final size:26
Alignment explanation
Indices: 16725428--16725480 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16725418 GTTGACTTAG
*
16725428 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16725454 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16725480 G
1 G
16725481 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16725837 original size:159 final size:157
Alignment explanation
Indices: 16725454--16725830 Score: 381
Period size: 159 Copynumber: 2.4 Consensus size: 157
16725444 CCCAGTCTAA
* * * * * **
16725454 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAATCAGACCGAGGGTTGTGGTAGTAGGATCGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * *
16725518 AGCACGCAAGGGAGATCGGGCAATCCCCGGCTTACGCATTTCGCCTCTCCGACCGACTGAGCGCC
65 AGCACGCAAGGGAGACCGAGCAATCCCCGACTTACGCATTTCGCCTCTCAGACCGACTCAGCGCC
** *
16725583 CACACGCCCGTTTCGTGGGTTGGCTTAG
130 CACACGCCCGTTTCGTGGGTTGAATTAC
* ** *
16725611 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACTGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAG-GACCG
* * * *
16725673 ACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTACGCATTAT-GCCTCTCTAG-TCGGCTC
63 ACAGCACGCA-AGGGAGACCGAGC-AATCCCCGACTTACGCATT-TCGCCTCTC-AGACCGACTC
* * *
16725736 AGTGCCTGA-ACGCTCGTTTCGTGGGTTGAATTAC
124 AGCGCC-CACACGCCCGTTTCGTGGGTTGAATTAC
*
16725770 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGACC
16725831 AGCAGCAGGA
Statistics
Matches: 177, Mismatches: 31, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
156 4 0.02
157 52 0.29
158 12 0.07
159 102 0.58
160 7 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAAGGGAGACCGAGCAATCCCCGACTTACGCATTTCGCCTCTCAGACCGACTCAGCGCCC
ACACGCCCGTTTCGTGGGTTGAATTAC
Found at i:16726250 original size:525 final size:525
Alignment explanation
Indices: 16725219--16726319 Score: 1268
Period size: 525 Copynumber: 2.1 Consensus size: 525
16725209 GAGCATCTGC
* *
16725219 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGAACC
1 ACGCTCGTTTCGTGGGTT-GATTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGCCGAACC
* * ** * **
16725284 GAGGATGGTGGCAGCAGGACCGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGTTAATCCCC
65 AAGGATGGTGGCAGCAGGACCGACAGCAGGATCGAAAGCACACAGAGGGGGACCAGCCAATCCCC
* * * *
16725349 AACTTGCACATTATGCCTTTTCGATCAGCCTCTCCAGCCGGTTGAGTAACCCGCATGCTCATTTC
130 AACTTGCACATTATACCTCTTCGATCAGCCTCTCCAGCCGGCTGAGTAACCCGCACGCTCATTTC
* *
16725414 ATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
195 ATGGGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTA
* * * * * * *
16725479 AGATCGAATCAGACCGAGGGTTGTGGTAGTAGGATCGTTAGCACGCAAGGGAGATCGGGCAATCC
260 AGATCGAACCAGACCAAAGGTTGCGGCAGCAGGATCGATAGCACGCAAGGGAGATCGGGCAATCC
* * *
16725544 CCGGCTTACGCATTTCGCCTCTCCGACCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTT
325 ACGGCTTACGCATTTCGCCTCTCCGACCGACTGAGCGCCCACAAGCCCGTTTCATGGGTTGGCTT
* * * * *
16725609 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGGGTTGTGGCAGCGAGACCGA
390 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAAGGTTATGGCAGCGAGACAGA
* ** * *
16725674 CAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCTAGTCGGCTCAGT
455 CAGCACACAGAGGGGGACCGAGCCAATCCCAGACTTACGCATTATGCCTCTCCAGTCGGCTCAGT
*
16725739 GCCTGA
520 GCCCGA
* * * * *
16725745 ACGCTCGTTTCGTGGGTTGAATTACGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGAC
1 ACGCTCGTTTCGTGGGTTG-ATTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAG-CCGAAC
* * * *
16725809 CAAGGGTTGTGGCAGCAGGACC-AGCAGCAGGATCGAAAGGACACAG-GGGGGACCAAGCCGATC
64 CAAGGATGGTGGCAGCAGGACCGA-CAGCAGGATCGAAAGCACACAGAGGGGGACC-AGCCAATC
* * * ** **
16725872 CCCGACTTGCACATTCTACCTCTTCG-TCGGCCTCTCCAGTTGGCTGAG-CGCCCGCACGCTCAT
127 CCCAACTTGCACATTATACCTCTTCGATCAGCCTCTCCAGCCGGCTGAGTAACCCGCACGCTCAT
** * *
16725935 TTCATGGGTTGACTAAGTTATACTGAGTTCATCCCCAGTCTAAGCATAC-GAAGTCCATTCTCAG
192 TTCATGGGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG-AGTCCATTCCCAG
* * * * *
16725999 TCTAAGATTGAACCAGACCAAAGGTTGCGGCAGCAGGATCGATAGCATGCAGGGGGGATTGGGTC
256 TCTAAGATCGAACCAGACCAAAGGTTGCGGCAGCAGGATCGATAGCACGCAAGGGAGATCGGG-C
* * * * ** * * *
16726064 GATCCACGGCTTGCGCA-TTCTGCCTTTTCGGTCGGCTGAGCGCCCGCAAGTCCGTTTCATGGGT
320 AATCCACGGCTTACGCATTTC-GCCTCTCCGACCGACTGAGCGCCCACAAGCCCGTTTCATGGGT
* * *
16726128 TGGCTTCGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCAGACTGAAGGTTATGGCAGCGG
384 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAAGGTTATGGCAGCGA
* ** *
16726193 GATCAG-CAGCACATAGAGGGGGACCGAGCCAATCCACAG-CTTGTGCATTCA-GCCTCTCCGGT
449 GA-CAGACAGCACACAGAGGGGGACCGAGCCAATCC-CAGACTTACGCATT-ATGCCTCTCCAGT
* *
16726255 CGGCTGAGTGCCCGC
511 CGGCTCAGTGCCCGA
* * * * *
16726270 ACGCTTGTTTCATGGGTTGGTATAGGCATATGGAGTTCATTCCATGTCTA
1 ACGCTCGTTTCGTGGGTTGAT-TAGGCATACGGAGTTCATTCCAAGTCTA
16726320 GGCATACGGA
Statistics
Matches: 478, Mismatches: 86, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
523 1 0.00
524 123 0.26
525 235 0.49
526 119 0.25
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (525 bp):
ACGCTCGTTTCGTGGGTTGATTAGGCATACGGAGTTCATTCCAAGTCTAAGCACCAGCCGAACCA
AGGATGGTGGCAGCAGGACCGACAGCAGGATCGAAAGCACACAGAGGGGGACCAGCCAATCCCCA
ACTTGCACATTATACCTCTTCGATCAGCCTCTCCAGCCGGCTGAGTAACCCGCACGCTCATTTCA
TGGGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTAA
GATCGAACCAGACCAAAGGTTGCGGCAGCAGGATCGATAGCACGCAAGGGAGATCGGGCAATCCA
CGGCTTACGCATTTCGCCTCTCCGACCGACTGAGCGCCCACAAGCCCGTTTCATGGGTTGGCTTA
GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAAGGTTATGGCAGCGAGACAGAC
AGCACACAGAGGGGGACCGAGCCAATCCCAGACTTACGCATTATGCCTCTCCAGTCGGCTCAGTG
CCCGA
Found at i:16726745 original size:26 final size:26
Alignment explanation
Indices: 16726708--16726760 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16726698 GTTGACTTAG
*
16726708 GCATACGAAGTTGATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16726734 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16726760 G
1 G
16726761 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16726922 original size:26 final size:26
Alignment explanation
Indices: 16726892--16726944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16726882 GTTGGCTTAG
*
16726892 GCATAGGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
16726918 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
16726944 G
1 G
16726945 ATCGCATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:16727203 original size:196 final size:196
Alignment explanation
Indices: 16726798--16727311 Score: 746
Period size: 196 Copynumber: 2.6 Consensus size: 196
16726788 CAAGATCGAC
* * *
16726798 AGCACGTCGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCC-GACTGGTTGAGCG
1 AGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTC-GGTTGAGCG
* * * *
16726862 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* *
16726927 GTTCATTCTCAGTCTAAGATCGCATCAGATCGAGGGTTGTGGTAGCAGGACCAGCAGCAGGATCG
130 GTTCATTCTCAGTCTAAGATCGCACCAGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCG
16726992 GT
195 GT
* * * *
16726994 AGCACGCAGGGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
1 AGCACGTA-GGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGGTTGAGCG
* * *
16727059 CCCGGACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TCCATGTCTAGGCATACAGA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
* *
16727123 GTTCATT-TCCAGTCTAAGATTGCACCGGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATC
130 GTTCATTCT-CAGTCTAAGATCGCACCAGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATC
16727187 GGT
194 GGT
** * * *
16727190 AGCACGTAGGGGGGATCGGGTCGATCCTTGACTTGCGGATTCTGCCTCTCTGGTCGGTTGAGCGC
1 AGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
* * *
16727255 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGC
66 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16727312 CCTAGCCGGA
Statistics
Matches: 281, Mismatches: 33, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
195 88 0.31
196 104 0.37
197 87 0.31
198 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (196 bp):
AGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
TTCATTCTCAGTCTAAGATCGCACCAGATCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGG
T
Found at i:16727484 original size:25 final size:25
Alignment explanation
Indices: 16727455--16727502 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
16727445 GTTGACTTAG
16727455 GCATACGGAGTTCATCCCCAGTCAA
1 GCATACGGAGTTCATCCCCAGTCAA
*
16727480 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATCCCCAGTC
16727503 TAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTCAA
Found at i:16729686 original size:26 final size:26
Alignment explanation
Indices: 16729650--16729700 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16729640 TGGCTTAGGG
16729650 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
16729676 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16729701 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:16730393 original size:26 final size:26
Alignment explanation
Indices: 16730357--16730539 Score: 169
Period size: 26 Copynumber: 7.0 Consensus size: 26
16730347 GTTGACTTAG
16730357 GCATACGGAGTTCATCCCCCA-TCTAA
1 GCATACGGAGTTCAT-CCCCAGTCTAA
16730383 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16730409 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** ** ** *
16730435 G-AT-C--AGACCAGACTAAGGGTTGCTAG
1 GCATACGGAGTTCATCCCCA--G-T-CTAA
*
16730461 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16730487 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** *
16730513 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16730539 G
1 G
16730540 ATCAGACCAG
Statistics
Matches: 127, Mismatches: 21, Indels: 18
0.77 0.13 0.11
Matches are distributed among these distances:
22 6 0.05
24 2 0.02
25 8 0.06
26 101 0.80
27 3 0.02
28 2 0.02
30 5 0.04
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16730534 original size:104 final size:105
Alignment explanation
Indices: 16730345--16730561 Score: 391
Period size: 104 Copynumber: 2.1 Consensus size: 105
16730335 CTCGTTTCGT
16730345 GGGTTGACTTAGGCATACGGAGTTCATCCCCCATCTAAGCATACGGAGTTCATCCCCAGTCTAAG
1 GGGTTG-CTTAGGCATACGGAGTTCATCCCCCATCTAAGCATACGGAGTTCATCCCCAGTCTAAG
*
16730410 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTAA
65 CATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTAA
*
16730451 GGGTTGC-TAGGCATACGGAGTTCATCCCCCGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGC
1 GGGTTGCTTAGGCATACGGAGTTCATCCCCCATCTAAGCATACGGAGTTCATCCCCAGTCTAAGC
*
16730515 ATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
66 ATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTAA
16730555 GGGTTGC
1 GGGTTGC
16730562 GACAGCAGGA
Statistics
Matches: 108, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
104 101 0.94
105 1 0.01
106 6 0.06
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (105 bp):
GGGTTGCTTAGGCATACGGAGTTCATCCCCCATCTAAGCATACGGAGTTCATCCCCAGTCTAAGC
ATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACTAA
Found at i:16731050 original size:26 final size:26
Alignment explanation
Indices: 16731003--16731052 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16730993 GGCTTAGGCT
*
16731003 TATGGAGTTCATTCCATTTCTAAGCA
1 TATGGAGTTCATTCCATGTCTAAGCA
16731029 TATGGAGTTCATTCCCA-GTCTAAG
1 TATGGAGTTCATT-CCATGTCTAAG
16731053 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (26 bp):
TATGGAGTTCATTCCATGTCTAAGCA
Found at i:16732664 original size:26 final size:26
Alignment explanation
Indices: 16732616--16732668 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16732606 GCTGACTTAG
* *
16732616 GCATACGGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
16732642 GCATACAGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCT-CCAGTCTAA
16732668 G
1 G
16732669 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:16733012 original size:159 final size:158
Alignment explanation
Indices: 16732837--16733134 Score: 350
Period size: 159 Copynumber: 1.9 Consensus size: 158
16732827 CCCCAGTTGA
* * ** * *
16732837 ACCGAGGGTTGTGGTAGTGGGATCGACAGCACG-CGGAGGGGGACC-GAATCGATCCTC-GACTT
1 ACCGAGAGTTGCGGTAGTAAGATCGACAGCACGTAGGA-GGGGACCAG-ATCGATCCCCAG-CTT
* * * *
16732899 GCGCATTATGCCTATCCGGTCTGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
63 GCGCATTATGCCTATCAGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA-GCATA
16732964 CGGAGTTCATTCCCAGTCTAAGATTGGATCGG
127 CGGAGTTCATTCCCAGTCTAAGATTGGATCGG
* * *
16732996 ACCGAGAGTTGCGGTAGTAAGATCGACAGCGCGTAGGAGGGGACCAGGTCGGTCCCCAGCTTGCG
1 ACCGAGAGTTGCGGTAGTAAGATCGACAGCACGTAGGAGGGGACCAGATCGATCCCCAGCTTGCG
* * * * * * *
16733061 CATTCTGCCTCTTAGGCCGGCTGAGGGCCCGCACGCTCGTTTCATGGGTTGGCTTAGCATATGGA
66 CATTATGCCTATCAGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCATACGGA
*
16733126 GTTCCTTCC
131 GTTCATTCC
16733135 ATCCTAAAGC
Statistics
Matches: 115, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
158 16 0.14
159 94 0.82
160 5 0.04
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (158 bp):
ACCGAGAGTTGCGGTAGTAAGATCGACAGCACGTAGGAGGGGACCAGATCGATCCCCAGCTTGCG
CATTATGCCTATCAGGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGCATACGGA
GTTCATTCCCAGTCTAAGATTGGATCGG
Found at i:16733519 original size:26 final size:28
Alignment explanation
Indices: 16733471--16733523 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
16733461 TCGCTGGCTA
16733471 GGCATCCGGAGTTCAATCCCAGTCTAAG
1 GGCATCCGGAGTTCAATCCCAGTCTAAG
* *
16733499 GGCATGCGG-GTTC-ATTCCAGTCTAA
1 GGCATCCGGAGTTCAATCCCAGTCTAA
16733524 TGATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.48
27 4 0.17
28 8 0.35
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (28 bp):
GGCATCCGGAGTTCAATCCCAGTCTAAG
Found at i:16734366 original size:26 final size:26
Alignment explanation
Indices: 16734329--16734379 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16734319 TTGGCTGAGG
16734329 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
*
16734355 CATACGGGGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16734380 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:16735246 original size:26 final size:26
Alignment explanation
Indices: 16735210--16735262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16735200 GTTGACTTAG
16735210 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16735236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16735262 G
1 G
16735263 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16735473 original size:21 final size:21
Alignment explanation
Indices: 16735457--16735496 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16735447 ACGGGACTGG
16735457 CAGCACGCAGAGGGGGACCGA
1 CAGCACGCAGAGGGGGACCGA
* *
16735478 CGGCATGCAGAGGGGGACC
1 CAGCACGCAGAGGGGGACC
16735497 AGGCCGATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.45, T:0.03
Consensus pattern (21 bp):
CAGCACGCAGAGGGGGACCGA
Found at i:16736558 original size:22 final size:22
Alignment explanation
Indices: 16736522--16736573 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
16736512 GACCGACAAT
*
16736522 GGGATC-GACAGCACATAGAGG
1 GGGATCGGGCAGCACATAGAGG
16736543 GGGATCGGGCAGCACATAGAGG
1 GGGATCGGGCAGCACATAGAGG
16736565 GGGATCGGG
1 GGGATCGGG
16736574 TTGATCCCCG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.27, C:0.17, G:0.46, T:0.10
Consensus pattern (22 bp):
GGGATCGGGCAGCACATAGAGG
Found at i:16736677 original size:26 final size:26
Alignment explanation
Indices: 16736648--16736700 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16736638 GTTGAATTAG
*
16736648 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16736674 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16736700 G
1 G
16736701 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16736911 original size:21 final size:21
Alignment explanation
Indices: 16736895--16736934 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16736885 GCGGGACTGG
16736895 CAGCACGCAGAGGGGGACCGA
1 CAGCACGCAGAGGGGGACCGA
* *
16736916 CAGCATGCGGAGGGGGACC
1 CAGCACGCAGAGGGGGACC
16736935 AAGCCGATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.45, T:0.03
Consensus pattern (21 bp):
CAGCACGCAGAGGGGGACCGA
Found at i:16737893 original size:170 final size:168
Alignment explanation
Indices: 16737492--16737958 Score: 424
Period size: 170 Copynumber: 2.7 Consensus size: 168
16737482 GGGTTGTAGT
* * * * *
16737492 AGCAGGATCGACAGCACACTGGGGGGTATCAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCTG
1 AGCAGGATCGACAGCACGCAGGGGGG-A-CCGACCGATCCCCGACTTGCGCATTCTGCCTCTCCG
*
16737557 GCCGACTGAGCGCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATT
64 GCCGACTGAGCACC-GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATT
* * * *
16737622 TAAGATCGGATCGGACCGAAGGTTGCGGTGGTAGGTCCAGC
128 TAAGACCGGATCGGACCGAAGGTTGCGGTAGCAGGACCAGC
* * * * *
16737663 AGTAGGATCGATAGCACGCAGGGGGGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGA-CCGATCCCCGACTTGCGCATTCTGCCTCTCCGG
*
16737728 CC-AGCTGAGCACC-CATACGCTCGTTTCGT-GGTTGGCTTAGGCATACAGAGTTCGTT-CC-AT
65 CCGA-CTGAGCACCGCAT--GCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAAT
* * * * * *
16737788 GTCTAAGCCCCGG-TTGGATCGAAGGTTGTGGTAGCAGGACCGGT
127 -T-TAAG-ACCGGATCGGACCGAAGGTTGCGGTAGCAGGACCAGC
* * * * * * * *
16737832 GGCAGGATTGGCAGCATGCAGAGGGGGACCGACCTGATCCCCGACTTGCACATTATGCCTCTTCA
1 AGCAGGATCGACAGCACGCAG-GGGGGACCGACC-GATCCCCGACTTGCGCATTCTGCCTCTCCG
* ** ** * * * *
16737897 GTCGGTTGAGTGCCTGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
64 GCCGACTGAGCACC-GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCA
16737959 GTCTAAGCAT
Statistics
Matches: 236, Mismatches: 45, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
167 2 0.01
168 6 0.03
169 73 0.31
170 105 0.44
171 45 0.19
172 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (168 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC
CGACTGAGCACCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATTTAA
GACCGGATCGGACCGAAGGTTGCGGTAGCAGGACCAGC
Found at i:16737968 original size:26 final size:26
Alignment explanation
Indices: 16737939--16737991 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16737929 GTTGACTTAG
16737939 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16737965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16737991 G
1 G
16737992 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16738293 original size:159 final size:157
Alignment explanation
Indices: 16737966--16738467 Score: 420
Period size: 159 Copynumber: 3.2 Consensus size: 157
16737956 CCAGTCTAAG
* *
16737966 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
1 CATACGGAGTTCATT-CCAGTCTAAGACCAAACCGGACCGAGGGTTGCGGTAGCAGGACCGACAG
** * * *
16738031 CACGTAGGGGGGACCAGGTCGATCTTCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCATCC
65 CACACAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCATCC
* * *
16738096 GCACGCCCATTTCATGGGTTGGCTTAGG
130 GCACGCACATTTCATGGGTTGACTTAGA
* * * * * * *
16738124 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGATAG
1 CATACGGAGTTCATTCCA-GTCTAAGACCAAACCGGACCGAGGGTTGCGGTAGCAGGACCGACAG
* * * *
16738189 CACACAGAGGGGGACC-GGATCGATCCTCGGCTTGTGCATTAC-GCCTTTTCGGCCAGCTCAG--
65 CACACAG-GGGGGACCAGG-TCGATCCTCGGCTTGCGCATT-CTGCCTCTCCGGCCAGCTGAGCA
* *
16738250 TGCTCGCACGCACATTTCGTGGGTTGACTTATA
127 T-C-CGCACGCACATTTCATGGGTTGACTTAGA
* * * * * * * *
16738283 CATACAGAGTTCATTCCTAGCCTAAGATCAGACCAGACCGAGGGTTGCGATAGTAGGATCGACAG
1 CATACGGAGTTCATTCC-AGTCTAAGACCAAACCGGACCGAGGGTTGCGGTAGCAGGACCGACAG
* ** ** * * * ** * **
16738348 TACGATGGGGGGGACTGGGTCGATCCCCAGCTTGAGCATTCTGCCTCTCCGATCGGCTGAGCGCC
65 CAC-ACAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCATC
* * * ** *
16738413 CGCACACTCGTTTTTTGGGTT-AGCTTAGG
129 CGCACGCACATTTCATGGGTTGA-CTTAGA
16738442 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCA-GTCTAAG
16738468 CATATGGAGT
Statistics
Matches: 269, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.01
158 63 0.23
159 195 0.72
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CATACGGAGTTCATTCCAGTCTAAGACCAAACCGGACCGAGGGTTGCGGTAGCAGGACCGACAGC
ACACAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCATCCG
CACGCACATTTCATGGGTTGACTTAGA
Found at i:16738477 original size:26 final size:26
Alignment explanation
Indices: 16738441--16738493 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16738431 GTTAGCTTAG
16738441 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
16738467 GCATATGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16738493 G
1 G
16738494 ATTTTGCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16745432 original size:26 final size:26
Alignment explanation
Indices: 16745396--16745448 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16745386 GTTGGCTTAG
16745396 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16745422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16745448 G
1 G
16745449 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16746130 original size:158 final size:159
Alignment explanation
Indices: 16745618--16746445 Score: 736
Period size: 159 Copynumber: 5.1 Consensus size: 159
16745608 CCCAGTCAAA
* * * * * *
16745618 GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGA-TCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACT-GGC
* *
16745682 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCG
65 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
16745746 CCCGCACAC-CTATTTCATGGGTTGGCTTAG
130 CCCGCACACTC-ATTTCATGGGTTGGCTTAG
* ** * ** * * *
16745776 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGGC
* * * * *
16745840 AGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCG
65 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
*
16745905 CCCGC-CTACCCATTTCATGGGTTGGCTTAG
130 CCCGCAC-ACTCATTTCATGGGTTGGCTTAG
* ** *
16745935 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACTGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGGC
* * ** * *
16745999 AGCACGCAGAGGGGGA-CGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAACG
65 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
16746063 CCCG-AGCGCTCGTTTCTTGGGTTGACTTAG
130 CCCGCA-CACTCATTTCATGGGTTGGCTTAG
* * * * * * **
16746093 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGATTGTGACAGTAGGATTAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGGCA
** * * ** **
16746158 GCACGTTGGGGGGGATCGGGCCGATCCTCGGCTTGTTCATTCTGCCTCTCCGGTTGGCTGAGCGC
66 GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
16746223 CCGCACGCTCGTTTCATGGGTTGGCTTAG
131 CCGCACACTCATTTCATGGGTTGGCTTAG
* ** * * * * *
16746252 GCATACGGAGTTCATTCCCAGTCTATGATCGGATCAGACCGAGGCTTGCGACAGCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGGCA
* * * ** **
16746317 GCAAGATCTGCAGCACACAAGGGGGGACCGAGTCGATCCCCGGCTTGCATATTCTGCCTCTCCAA
66 GC---A-C-GCAG------A-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
** * * * * * *
16746382 CCTTCTGACCGCCCGCACGCTCGTTTCTTGGGTTGACTTAA
119 CCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAG
16746423 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
16746446 AAAATCATTT
Statistics
Matches: 555, Mismatches: 93, Indels: 31
0.82 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 177 0.32
159 278 0.50
160 2 0.00
162 1 0.00
163 1 0.00
164 2 0.00
171 91 0.16
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCAACCAGACCGAGGGTTGTGGCAGCAGGACTGGCA
GCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCGCACACTCATTTCATGGGTTGGCTTAG
Found at i:16746292 original size:317 final size:317
Alignment explanation
Indices: 16745618--16746319 Score: 765
Period size: 317 Copynumber: 2.2 Consensus size: 317
16745608 CCCAGTCAAA
* * *
16745618 GCATACGAAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGA-TCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGACT-GGC
* * * * * *
16745682 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGC
* * * * * **
16745747 CCGCACACCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
130 CCGCACACCTATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCCAACCA
* * * *
16745812 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGC
195 GACCGAGGATTGTGACAGCAGGACCAACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGC
16745877 GCATTCTGCCTCTCCGACCGACTGAGCGCCCGCCTACCCATTTCATGGGTTGGCTTAG
260 GCATTCTGCCTCTCCGACCGACTGAGCGCCCGCCTACCCATTTCATGGGTTGGCTTAG
* ** * ** *
16745935 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACTGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGACTGGC
**
16745999 AGCACGCAGAGGGGGA-CGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAACG
65 AGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACG
* * * * *
16746063 CCCG-AGC-GCTCGTTTCTTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGA
129 CCCGCA-CACCT-ATTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGACCCA
* ** ** * * *
16746125 ACCAGACCGAGGATTGTGACAGTAGGATTAACAGCACGTTGGGGGGGATCGGGCCGAT-CCTCGG
191 ACCAGACCGAGGATTGTGACAGCAGGACCAACAGCACGCAGAGGGGGACCGGGCCGATCCCT-GA
** *** * *
16746189 CTTGTTCATTCTGCCTCTCCGGTTGGCTGAGCGCCCG-C-ACGCTCGTTTCATGGGTTGGCTTAG
255 CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCCTAC-C-CATTTCATGGGTTGGCTTAG
* ** * * *
16746252 GCATACGGAGTTCATTCCCAGTCTATGATCGGATCAGACCGAGGCTTGCGACAGCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGACTGGCA
16746317 GCA
66 GCA
16746320 AGATCTGCAG
Statistics
Matches: 314, Mismatches: 61, Indels: 20
0.79 0.15 0.05
Matches are distributed among these distances:
315 2 0.01
316 11 0.04
317 288 0.92
318 13 0.04
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGACTGGCA
GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCC
CGCACACCTATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCCAACCAG
ACCGAGGATTGTGACAGCAGGACCAACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTGCG
CATTCTGCCTCTCCGACCGACTGAGCGCCCGCCTACCCATTTCATGGGTTGGCTTAG
Found at i:16746659 original size:26 final size:26
Alignment explanation
Indices: 16746630--16746682 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16746620 GTTGGCTTAG
16746630 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16746656 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16746682 G
1 G
16746683 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16747652 original size:26 final size:26
Alignment explanation
Indices: 16747616--16747668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16747606 GTTGACTTAG
16747616 GCATACGGAGTACATCCCCAGTCTAA
1 GCATACGGAGTACATCCCCAGTCTAA
* *
16747642 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATCCCCAGTCTAA
16747668 G
1 G
16747669 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACATCCCCAGTCTAA
Found at i:16748148 original size:26 final size:26
Alignment explanation
Indices: 16748117--16748169 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16748107 GTTGGCTTAG
16748117 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16748143 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16748169 G
1 G
16748170 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16748716 original size:870 final size:872
Alignment explanation
Indices: 16746819--16749042 Score: 2594
Period size: 870 Copynumber: 2.5 Consensus size: 872
16746809 GGGGCAGCAC
* * * *
16746819 GATCGACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTTCGGTCGGC
1 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTC-TCCGACGGC
*
16746884 TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
65 TGAGCGCCCGCACG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * ** *
16746949 CTAGCCGGACTGAGGGTTGTGGCAGCGAGATCGGTAGCACGCAGAGGGGGATCGGGTCGATCCCC
129 CCAGCCAGACTGAGGGTTGTGGCAGCGAGATCGACAGCACACAGAGGGGGATCGGGTCGATCCCC
* * * **
16747014 GGCTTGCGCATTATGCCTCTTCG-GCTGGCTCAATGCCTGTACACTCATTTTGTGGGTTGACTTA
194 GGCTTGCGCATTATGCCTCTTCGAACTGGCTCAGTGCCCGTACACTCATTTCATGGGTTGACTTA
* * * *
16747078 TGCATACGGAGTTCATTCCCAATCTAAGGTCAGACCGGACCAAGGGTTACGGCATCAGGATCGAC
259 TGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** * ** * * * *
16747143 AGCATC-CAGGGGGGATGGGGCCGATCCTCGACTTACGTGTTCTACCTCTCCGACCGACTGAGCG
324 AGCA-CATAGGGGGGATCAGGCCGATCCCCGA-TTACGCATTCTGCCTCTCCGGCTGACTGAGCA
* *
16747207 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-AAGCATACGGA
387 CCCGCACGCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * ** * * * * * * *
16747271 GTTCATTCCAATTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGGCTAGCAGTAGGATTA
452 GTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCACTAGGACCAGCAGCAGGATCA
* * * * *
16747336 ACAGCATGCAGGGGGGACCGAGCTGATCCCCGGCTTACGCATTCTGCATCTCCGACCGGCTGCGC
517 ACAGCACGAAGAGGGGACCGAGCCGATCCCCGGCTTACACATTCTGCATCTCCGACCGGCTGCGC
* * * *
16747401 ACCTGCACGCTCATTTCGCAGATTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGT
582 ACCTACACGCTCATTTCACAGATTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGT
* * *
16747466 CGGACAGAAGGTTGTGGCAGTAGGATCGGCAACGGGATCGATAGCACACAGAGGGGGATCGGGCT
647 CGGACAGAAGGTTATGGCAGCAGGATCGGCAA--GGA-CGATAG---ACAGAGGGGGATCAGGCT
*** * * * ** ** * ** *
16747531 GATCCTTGGCTTGCACATTATGCCTCTCCAGCTGACCTCTCTGGCCGGTTGAGCGCCTTCACGCT
706 GATCCCCAGCCTGCACATTATGCCTCACCAGCCGACCTCTCCAGCCGACTAAGCGCCCGCACCCT
16747596 CGTTTCATGGGTTGACTTAGGCATACGGAGTACATCCCCAGTCTAAGCATACGGAGTTCATTCCC
771 CGTTTCATGGGTTGACTTAGGCATACGGAGTACATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
16747661 AGTCTAAGATCGAACTAGATCGAGGGTTACGGCAATAG
836 AATCTAAGATCGAACTAGATCGAGGGTTA-GGCAACAG
** ** *
16747699 GATCGACAGCACGCAGGGGGGACCGGGCCGATCTTCGGCTTGTGCATTCTGTCTCTCCGATCGGC
1 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA-CGGC
* * * *
16747764 TGAGCGCGCGCATGCCTGTTTCGTGTGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCC
65 TGAGCGCCCGCACGCC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * *
16747829 CCAGCAAGACTGAGGGTTGTGGCAGTGAGATCGACAGCACATAGAGGGGGACCGGG-CTGGTCCC
129 CCAGCCAGACTGAGGGTTGTGGCAGCGAGATCGACAGCACACAGAGGGGGATCGGGTC-GATCCC
* * * * * * * *
16747893 TGGCTTACGCATTATGCCTATCCGATC-AGCTTAGTGCCCGTACGCTCATTTCATGGGTTGACTT
193 CGGCTTGCGCATTATGCCTCTTCGAACTGGCTCAGTGCCCGTACACTCATTTCATGGGTTGACTT
* * ** *
16747957 AGGCACACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA
258 ATGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
** * *
16748022 CAGCACATAAAGGGGATCAAGCCGATCCCCAGATTATGCATTCTGCCTCTCCGGCTGACTGAGCA
323 CAGCACATAGGGGGGATCAGGCCGATCCCC-GATTACGCATTCTGCCTCTCCGGCTGACTGAGCA
* * *
16748087 TCCACACGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
387 CCCGCACGCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * *
16748152 GTTCATTCCTAGTCTAAGATTAGACCAGACTGAGGGTTGCGGCTCTAGGACCAGCAGCAGGATCG
452 GTTCATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCACTAGGACCAGCAGCAGGATCA
* * * * * *
16748217 ACAGCACGTAAGAGGGGACCGGGCCGATCCTCGGCTTGCACATTTTGCCTCTCCGATCGGCTGAA
517 ACAGCACG-AAGAGGGGACCGAGCCGATCCCCGGCTTACACATTCTGCATCTCCGACCGGCTG--
* * ** * *
16748282 TGC-CC-ACACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCC
579 CGCACCTACACGCTCATTTCACAGATTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCC
* * *
16748345 AGTCGGACCGAGGGTTATGGCAGCAGGATCGGC-A-G-C-AT-G-TAGAGGGGGA-CTAGGCTGA
644 AGTCGGACAGAAGGTTATGGCAGCAGGATCGGCAAGGACGATAGACAGAGGGGGATC-AGGCTGA
* * *
16748403 TCCCCAGCCTGCGCATTATGCCTCACC-GACCGACCTCTCCAGTCGACTAAGTGCCCGCACCCTC
708 TCCCCAGCCTGCACATTATGCCTCACCAG-CCGACCTCTCCAGCCGACTAAGCGCCCGCACCCTC
* * **
16748467 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTGA
772 GTTTCATGGGTTGACTTAGGCATACGGAGTACATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* *
16748532 ATCTAAGATCGGA-TCAGATCGAGGGTT-GTCATAGCAG
837 ATCTAAGATCGAACT-AGATCGAGGGTTAGGCA-A-CAG
* * * * * *
16748569 GATTGGCAGCACACAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACGGGC
1 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGAC-GGC
* * * *
16748634 TAAGTGCCCGCACGTCCGTTTCGTGGGTTGGCGTAGGCATAGGGATTTCATTCCATGTCTAAGCC
65 TGAGCGCCCGCACG-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * ** *
16748699 CCAGCCAGACCGAGGGTTGTGGCAGCGGGCCCGACAGCACACAGAGGGGGATCAGGTCGATCCCC
129 CCAGCCAGACTGAGGGTTGTGGCAGCGAGATCGACAGCACACAGAGGGGGATCGGGTCGATCCCC
* * * *
16748764 AGCTTGCGCATTATGCCTCTTC-AACTGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTA
194 GGCTTGCGCATTATGCCTCTTCGAACTGGCTCAGTGCCCGTACACTCATTTCATGGGTTGACTTA
* * * * *
16748828 TGCATACGGAGTTCATTCCCAATCTAAGATCAGACCTGACTGAGGGTTGTGGTAGTAGGATCGAC
259 TGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** * * * * *
16748893 AACACATAGGGGGGACCAGGTTGATCCCCGGCTTGCGCATTTTGCCTCTCCTGCTGGCTGAGCAC
324 AGCACATAGGGGGGATCAGGCCGATCCCC-GATTACGCATTCTGCCTCTCCGGCTGACTGAGCAC
* *
16748958 CCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAG
388 CCGCACGCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
16749023 TTCATTCCTAGTCTAAGATT
453 TTCATTCCTAGTCTAAGATT
16749043 TTGAGCTGCG
Statistics
Matches: 1126, Mismatches: 199, Indels: 48
0.82 0.14 0.03
Matches are distributed among these distances:
868 3 0.00
869 7 0.01
870 540 0.48
871 3 0.00
874 1 0.00
875 2 0.00
876 1 0.00
878 1 0.00
879 7 0.01
880 362 0.32
881 73 0.06
882 122 0.11
883 2 0.00
884 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (872 bp):
GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACGGCT
GAGCGCCCGCACGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCCAGACTGAGGGTTGTGGCAGCGAGATCGACAGCACACAGAGGGGGATCGGGTCGATCCCCGG
CTTGCGCATTATGCCTCTTCGAACTGGCTCAGTGCCCGTACACTCATTTCATGGGTTGACTTATG
CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACATAGGGGGGATCAGGCCGATCCCCGATTACGCATTCTGCCTCTCCGGCTGACTGAGCACCCG
CACGCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
ATTCCTAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCACTAGGACCAGCAGCAGGATCAACAG
CACGAAGAGGGGACCGAGCCGATCCCCGGCTTACACATTCTGCATCTCCGACCGGCTGCGCACCT
ACACGCTCATTTCACAGATTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGA
CAGAAGGTTATGGCAGCAGGATCGGCAAGGACGATAGACAGAGGGGGATCAGGCTGATCCCCAGC
CTGCACATTATGCCTCACCAGCCGACCTCTCCAGCCGACTAAGCGCCCGCACCCTCGTTTCATGG
GTTGACTTAGGCATACGGAGTACATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
CGAACTAGATCGAGGGTTAGGCAACAG
Found at i:16748813 original size:159 final size:158
Alignment explanation
Indices: 16748575--16749015 Score: 485
Period size: 159 Copynumber: 2.8 Consensus size: 158
16748565 GCAGGATTGG
* * * * *
16748575 CAGCACACAGGGGGGATC-GGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACGGGCTAAGT
1 CAGCACACAGGGGGGATCAGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCAACTGGCTAAGC
* * * * * *
16748639 GCCCGCACGTCCGTTTCGTGGGTTGGCGTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAG-
65 GCCCGCACCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* *
16748703 CCAGACCGAGGGTTGTGGCAGCGGGCCCGA
129 CCAGACCGAGGGTTGTGGCAGCAGGACCGA
* * *
16748733 CAGCACACAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCAACTGGCTCAGC
1 CAGCACACAG-GGGGGATCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAACTGGCTAAGC
* * * *
16748798 GCCCGCACACTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAG
65 GCCCGCAC-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * * *
16748861 ACCTGACTGAGGGTTGTGGTAGTAGGATCGA
128 ACCAGACCGAGGGTTGTGGCAGCAGGACCGA
* * * * * ** * *
16748892 CAACACATAGGGGGGACCAGGTTGATCCCCGGCTTGCGCATTTTGCCTCTCCTGCTGGCTGAGCA
1 CAGCACACAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAACTGGCTAAGCG
*
16748957 CCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CCCGCAC-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16749016 TATGGAGTTC
Statistics
Matches: 235, Mismatches: 41, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
157 3 0.01
158 107 0.46
159 118 0.50
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CAGCACACAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAACTGGCTAAGCG
CCCGCACCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
AGACCGAGGGTTGTGGCAGCAGGACCGA
Found at i:16748969 original size:158 final size:157
Alignment explanation
Indices: 16748512--16749004 Score: 508
Period size: 158 Copynumber: 3.1 Consensus size: 157
16748502 CCCAGTCTAA
** * * ** * *
16748512 GCATACGGAGTTCATTCTGAATCTAAGATCGGATCAGA-TCGAGGGTTGTCATAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACT-GAGGGTTGTGGTAGCAGGATCGAC
* * * * *
16748576 AGCACACAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACGGGCTAAGTGC
65 AGCACACAGGGGGGATCAGGTTGATCCCCGGCTTGCGCATTATGCCTCTCCG-CTGGCTAAGCGC
* *
16748641 CCGCACG-TCCGTTTCGTGGGTTGGCGTAG
129 CCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * * ** * * * **
16748670 GCATAGGGATTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGCCCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGA
* * ** *
16748733 CAGCACACAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCAACTGGCTCAGC
64 CAGCACACAG-GGGGGATCAGGTTGATCCCCGGCTTGCGCATTATGCCTC-TCCGCTGGCTAAGC
* * *
16748798 GCCCGCACACTCGTTTCATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
16748829 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCTGACTGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
* * * * * *
16748894 ACACATAGGGGGGACCAGGTTGATCCCCGGCTTGCGCATTTTGCCTCTCCTGCTGGCTGAGCACC
66 GCACACAGGGGGGATCAGGTTGATCCCCGGCTTGCGCATTATGCCTCTCC-GCTGGCTAAGCGCC
*
16748959 CGCACGCTCGTTTCATAGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
16748987 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16749005 ATGTCTAAGC
Statistics
Matches: 267, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 140 0.52
159 118 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
GCACACAGGGGGGATCAGGTTGATCCCCGGCTTGCGCATTATGCCTCTCCGCTGGCTAAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16749017 original size:26 final size:26
Alignment explanation
Indices: 16748987--16749039 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16748977 GTTGGCTTAG
16748987 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
16749013 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16749039 G
1 G
16749040 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16749159 original size:16 final size:16
Alignment explanation
Indices: 16749131--16749170 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
16749121 GCCTAAACGA
16749131 CGAC-ATTGAGGGTTT
1 CGACGATTGAGGGTTT
*
16749146 CGACGATTGGGGGTTT
1 CGACGATTGAGGGTTT
*
16749162 CGGCGATTG
1 CGACGATTG
16749171 TGCGCACATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.15, C:0.15, G:0.40, T:0.30
Consensus pattern (16 bp):
CGACGATTGAGGGTTT
Found at i:16749735 original size:26 final size:26
Alignment explanation
Indices: 16749698--16749750 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16749688 GTTGACTTAG
*
16749698 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
16749724 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
16749750 G
1 G
16749751 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:16750087 original size:157 final size:158
Alignment explanation
Indices: 16749779--16750078 Score: 345
Period size: 157 Copynumber: 1.9 Consensus size: 158
16749769 AAGCCCCAGC
* ** * *
16749779 CGGATCGAGGGTTGTGGCAGCGAGATCGACAGCATGCAGAGGGGGACCGGGCCTATCCCCGGCTT
1 CGGATAGAGGGTTGCAGCAGCGAGATCGACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTT
* * ** * *
16749844 GCGCATTATGCCTCTCTGACCGGGTCAGCCCTCGCACGCTCATTTTGTGGGTTTACTTAGGCATA
65 GCACATTATGCCTCTCCGACCGACTCAGCCCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
16749909 CAGAGTTAATTCCCAATCTAAGATCGGCT
130 CAGAGTTAATTCCCAATCTAAGATCGGCT
* *
16749938 CGGATAGAGGGTTGCAGCAGC-AGGATCGACAGCACGC-AGGGGGACCGGGCCGGTCCTCGGCTT
1 CGGATAGAGGGTTGCAGCAGCGA-GATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTT
* * * * * * **
16750001 GCACATTCTGCCTCTCCGATCGACTGATCACC-CGGACGCTCGTTTCGTGGGTTGGTTTAGGCAT
65 GCACATTATGCCTCTCCGACCGACTCAGC-CCTCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* *
16750065 ACGGAGTTCATTCC
129 ACAGAGTTAATTCC
16750079 ATGTCTAAGC
Statistics
Matches: 116, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
157 82 0.71
158 3 0.03
159 31 0.27
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CGGATAGAGGGTTGCAGCAGCGAGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTG
CACATTATGCCTCTCCGACCGACTCAGCCCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
AGAGTTAATTCCCAATCTAAGATCGGCT
Found at i:16750097 original size:26 final size:26
Alignment explanation
Indices: 16750061--16750121 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
16750051 GTTGGTTTAG
*
16750061 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16750087 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16750113 -CAT-CAGAGT
1 GCATACAGAGT
16750122 GGATCGAGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 6 0.18
25 3 0.09
26 21 0.64
27 3 0.09
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16750288 original size:26 final size:26
Alignment explanation
Indices: 16750258--16750310 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16750248 GTTGACTTAG
16750258 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
16750284 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16750310 G
1 G
16750311 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16750326 original size:197 final size:195
Alignment explanation
Indices: 16749959--16750333 Score: 475
Period size: 197 Copynumber: 1.9 Consensus size: 195
16749949 TTGCAGCAGC
* * * * * *
16749959 AGGATCGACAGCACGCAGGGGGACCGGGCCGGTCCTCGGCTTGCACATTCTGCCTCTCCGATCGA
1 AGGATCGACAGCAAGCAGGGGGACCAGGCCGATCCCCCGCTTGCACATCCTGCCTCTCCGATCGA
* * * ** * *
16750024 CTGATCACCCGGACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CTGACCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
***
16750089 ATACAGAGTTCATTCCCAGTCTAACATCAGAGTGGATCGAGGGTTGCGGTAGTAGGACCAGTAGT
131 ATACAGAGTTCATTCCCAGTCTAACATCAGACCAGATCGAGGGTTGCGGTAGTAGGACCAGTAGT
* *
16750154 AGGATCGACAGCAAGCAGGGGGGACCAGGCCGATCCCCCGCTTGCTCATCCTGCCTCTCCGGTCG
1 AGGATCGACAGCAAGCA-GGGGGACCAGGCCGATCCCCCGCTTGCACATCCTGCCTCTCCGATCG
* ***
16750219 GCTTGACCGTTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTA
65 AC-TGACCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTA
** *
16750283 AGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGAGGGTTGCG
128 AGCATACAGAGTTCATTCCCAGTCTAACATCAG-ACCAGATCGAGGGTTGCG
16750334 ACAGTAAGAT
Statistics
Matches: 151, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
195 16 0.11
196 42 0.28
197 90 0.60
198 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (195 bp):
AGGATCGACAGCAAGCAGGGGGACCAGGCCGATCCCCCGCTTGCACATCCTGCCTCTCCGATCGA
CTGACCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAACATCAGACCAGATCGAGGGTTGCGGTAGTAGGACCAGTAGT
Found at i:16750811 original size:26 final size:26
Alignment explanation
Indices: 16750760--16750811 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16750750 TTGGCTTAGC
* *
16750760 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATATAAG
16750786 CATACGGAGTTCATTCCCA-ATATAAG
1 CATACGGAGTTCATT-CCATATATAAG
16750812 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATATAAG
Found at i:16751257 original size:26 final size:26
Alignment explanation
Indices: 16751227--16751279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16751217 GTTGACTTAG
*
16751227 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16751253 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16751279 G
1 G
16751280 ATGGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16751733 original size:158 final size:156
Alignment explanation
Indices: 16751253--16751754 Score: 513
Period size: 158 Copynumber: 3.2 Consensus size: 156
16751243 CCTAGTCTAA
* * * * * **
16751253 GCATACAGAGTTCATTCCCA-GTCTAAGATGGGATCGGATCGAGGGTTGTGGCAGCAAGATTGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTGAC
* * * * *
16751317 AGCATGCAGAGGGGATCGAGCCGGTCC-CTGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
65 AGCACGCAGGGGGGACCG-GTC-GTCCTC-GACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
* * * * *
16751381 CCCGTACACCCATTTCATGGGTTGGCTTAG
127 CCCGAACGCTCGTTTCATGGGTTGGCATAG
* ** ** * *
16751411 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTGACA
** * * * * * *
16751476 GCACATAGAGGGCGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAACAC
66 GCACGCAG-GGGGGACC-GGTCG-TCCTCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
* * *
16751541 CCAAATGCTCGTTTCATGGGTTGACATAG
128 CCGAACGCTCGTTTCATGGGTTGGCATAG
* * *
16751570 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTGACA
* * *
16751635 GCACGCAGGGGGGACCAGGTCAGTCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGACC-GGTC-GTCCTCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
* * *
16751700 CGCACGCTCGTTTCGTGGGTTGGCCTAG
129 CGAACGCTCGTTTCATGGGTTGGCATAG
16751728 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16751755 CATACGGAGT
Statistics
Matches: 274, Mismatches: 64, Indels: 12
0.78 0.18 0.03
Matches are distributed among these distances:
157 3 0.01
158 146 0.53
159 123 0.45
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATTGACA
GCACGCAGGGGGGACCGGTCGTCCTCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCG
AACGCTCGTTTCATGGGTTGGCATAG
Found at i:16751764 original size:26 final size:26
Alignment explanation
Indices: 16751728--16751780 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16751718 GTTGGCCTAG
16751728 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTACCA-GTCTAA
16751754 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16751780 G
1 G
16751781 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16753695 original size:26 final size:26
Alignment explanation
Indices: 16753658--16753710 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16753648 GTTGACTTAG
*
16753658 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16753684 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
16753710 G
1 G
16753711 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16754198 original size:25 final size:26
Alignment explanation
Indices: 16754157--16754208 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
16754147 GTTGGCTTAG
16754157 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16754183 GCATACGG-GTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16754208 G
1 G
16754209 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16754907 original size:26 final size:26
Alignment explanation
Indices: 16754877--16754929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16754867 GTTGACTTAG
*
16754877 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16754903 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16754929 G
1 G
16754930 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16755396 original size:26 final size:26
Alignment explanation
Indices: 16755366--16755418 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16755356 GTTGGCTTAG
16755366 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16755392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16755418 G
1 G
16755419 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16755781 original size:26 final size:26
Alignment explanation
Indices: 16755745--16755797 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16755735 GTTGACTTAG
16755745 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16755771 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16755797 G
1 G
16755798 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16756246 original size:157 final size:156
Alignment explanation
Indices: 16755771--16756270 Score: 456
Period size: 157 Copynumber: 3.2 Consensus size: 156
16755761 CCTAGTCTAA
* * * *
16755771 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTACGGTAGCAAGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGATA
* * * * *
16755836 GCACGCAGGGTGGA-TCGGACGGTCCCCGGCTTGCGCATTCTGCGGT-TCCGAAC-GGCTGAGCA
65 GCACGTAGGG-GGACTGGGCCGGTCCCTGGCTTGCGCATTCTGC-CTCTCCG-ACTGGCTGAGCA
* * * *
16755898 CCCGCACGCCCGTTTTGTGAGTTGGCTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
16755928 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTATGGCAGCAGGA-CTGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTATGGCAGCAGGATC-GA
* * * * * * * * * *
16755991 CAGCATGTAGAGGGGGACCGGTCTGAT-CCTCGACTTGCGCATTATGCCTCTCCGA-TCGACTCA
63 TAGCACGT--AGGGGGACTGGGCCGGTCCCT-GGCTTGCGCATTCTGCCTCTCCGACT-GGCTGA
** * * * *
16756054 GTGCCCGAACGCTCGTTTCGTAGGCTGACTTAG
124 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
16756087 GCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGATCGAGGGTTGTGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGATA
* * *
16756152 GCACGTAGGGGGACTGGGCCGGTCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGTTGAGCACCT
65 GCACGTAGGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCC
*
16756217 GCACGCTCGTTTCATGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
16756244 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16756271 CATACGGAGT
Statistics
Matches: 264, Mismatches: 63, Indels: 32
0.74 0.18 0.09
Matches are distributed among these distances:
156 5 0.02
157 137 0.52
158 14 0.05
159 106 0.40
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGATAG
CACGTAGGGGGACTGGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16756274 original size:26 final size:26
Alignment explanation
Indices: 16756244--16756296 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16756234 GTTGGCTTAG
16756244 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16756270 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16756296 G
1 G
16756297 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16756859 original size:26 final size:26
Alignment explanation
Indices: 16756830--16756882 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16756820 GTTGACTTAG
16756830 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16756856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16756882 G
1 G
16756883 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16757854 original size:159 final size:157
Alignment explanation
Indices: 16757564--16757864 Score: 381
Period size: 159 Copynumber: 1.9 Consensus size: 157
16757554 GGATCAGATC
* **
16757564 GAGGGTTGTGGCAGCAGGATCGACAGCACACAAGGGGGATTGGGCCGATCCCAGCTTACGCATTC
1 GAGGGTTGTGGCAGCAGGACCGACAGCACACAAGGGGGACCGGGCCGATCCCAGCTTACGCATTC
* * * * * *
16757629 TGCCTCTCTAGCCGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGACATAGGGAGTTC
66 AGCCTCTCCAGCCAGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGACATAGGCAGTTC
16757694 ATTCCATGTCTATGCCCCAGCCAGGAT
131 ATTCCATGTCTATGCCCCAGCCAGGAT
* ** * *
16757721 GAGGGTTGTGGCAGCGGGACC-AGCAGCACATGGAGGGGGACCGGGCCGATCCTCGGCTTGCGCA
1 GAGGGTTGTGGCAGCAGGACCGA-CAGCACA-CAAGGGGGACCGGGCCGATCC-CAGCTTACGCA
* * ** *
16757785 TTCAGCCTTTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGCA
63 TTCAGCCTCTCCAGCCAGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGACATA-GGCA
16757850 -TTCATTCCATGTCTA
127 GTTCATTCCATGTCTA
16757865 AGCATACAGA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
156 1 0.01
157 26 0.21
158 17 0.14
159 74 0.61
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GAGGGTTGTGGCAGCAGGACCGACAGCACACAAGGGGGACCGGGCCGATCCCAGCTTACGCATTC
AGCCTCTCCAGCCAGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGACATAGGCAGTTC
ATTCCATGTCTATGCCCCAGCCAGGAT
Found at i:16759084 original size:26 final size:26
Alignment explanation
Indices: 16759048--16759100 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16759038 GTTGGCTTAG
*
16759048 GCATATGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCTATGTCTAA
16759074 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCTATGTCTAA
16759100 G
1 G
16759101 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTATGTCTAA
Found at i:16759291 original size:26 final size:26
Alignment explanation
Indices: 16759261--16759313 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16759251 GTTGACTTAG
16759261 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16759287 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16759313 G
1 G
16759314 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16760370 original size:26 final size:26
Alignment explanation
Indices: 16760340--16760392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16760330 GTTGACTTAG
*
16760340 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16760366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16760392 G
1 G
16760393 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16761236 original size:26 final size:26
Alignment explanation
Indices: 16761206--16761258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16761196 GTTAACTTAG
16761206 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16761232 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16761258 G
1 G
16761259 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16761705 original size:26 final size:26
Alignment explanation
Indices: 16761675--16761726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16761665 GTTGGCTTAG
16761675 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16761701 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16761727 TATCAGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16761982 original size:849 final size:842
Alignment explanation
Indices: 16760311--16763270 Score: 2699
Period size: 849 Copynumber: 3.4 Consensus size: 842
16760301 AGCTGAACGT
* *
16760311 CCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
*
16760376 TTCATTCCCAGTCTAAGATCAGACTGGACCGA-AGGTTG-TAGCA-GCA-GGGGGAACCGGGCCG
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGA-GTTGATAGCATGCAGGGGGGAA-CGGGCCG
* * * * *
16760437 ATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTAAGCGCCCGTACGCCCGTTTCGTGGGTTG
129 ATCCCCGGCTTACGCATTCTA-CTCTCCGGTCGGCTGAGCACCCGCACACCCGTTTCATGGGTTG
* * *
16760502 GCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGA
193 GCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCGGGACC----------G-A-C-CGA
* * * * *
16760567 CCGACAACATGCAGAGGAGGATCGGGCTGATCCTC-GACTTGCGCATTACGCCTCTCCGACCAGC
245 -C-AC-ACAT--AGAGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGACCAGC
* * *
16760631 TCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
304 TCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGAT
** * * * * * *
16760696 TGGATCGGACCAAGGGTTGCGG-CAGTAGGATCAACAGCA-CGTAGGAGGGATCGGGCCGGT-CC
368 CAGATCGGATCGAGGGTTACGGACAGTAGGATCGACAGCATCGCAGG-GGGATCGGGCTGGTCCC
* * * * ** * *
16760758 TCGACTTGCACATTTTGCCTCTCCGATCGACTGAGCGCTCGCACGCTCATTTCATAGGTTGGCTT
432 TAG-CTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTT
* * * *
16760823 AGGCATACGGAGTTCATTCCATGTATAAGCATACGAAGTTTGATTCCCAATCTAATATC-GAATC
496 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG-TTCATTCCCAGTCTAATATCAG-ATC
* * * * * * *
16760887 AGA-CTGAAGGTTACGGCAATAGGACCAGCAGTAGGATCGGCAGCACGTAAGGGGGGATAGGACT
559 AGATC-GAGGGTTACGG-TA-AGGACCAGCAG-A-GATCGACAGCACG-CAGGAGGGATCGGGCT
* * * * * * *
16760951 GATCCCCGGCTTGTGCATTCTGCCTCACCAACCGGTTGAGCGCCCGCACACTCGTTTCATGGGTT
618 GATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
16761016 GGCTTAGGCATGCGGGGTTCATTCCATGTCTAAGCCCCAGCAGGATCGAAGATTGTGGTAGCAGG
683 GGCTTAGGCAT-AGAGGTTCATTCCATGTCTAAGCCCCAGCAGGATCGAGGGTTGTGGTAGCAAG
* * *
16761081 ACCGCAGCGGGATCGACAGCACGTAGAGGGGGACCGAGTTGATCCCCGGCTTGCGCATTATGCCT
747 ACCGCAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCT
*
16761146 CTCC-AGCCGGCCTCTTCAGTCGGTTGAGTGC
812 CTCCGA-TCGGCCTCTTCAGTCGGTTGAGTGC
* * * * * *
16761177 CCACATGCTTGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
* * *
16761242 TTCATTCCCAGTCTAAGATCAGACCGAATCGAGAGTTACGATAGCATGCA-GGGGGAACAGGCCG
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTT--GATAGCATGCAGGGGGGAACGGGCCG
* * * * *
16761306 ATCCTCGGGTTACGTATTTCGT-CTCTCCGGTCAGCTGAGCACCCGCACGCCCGTTTCATGGGTT
129 ATCCCCGGCTTACGCA-TTC-TACTCTCCGGTCGGCTGAGCACCCGCACACCCGTTTCATGGGTT
*
16761370 GGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCGGGACCGA-C-A-ACACATATAGG
192 GGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCGGGACCGACCGACACACATAGAGG
* * *
16761432 GGGACCGGGTCGATCCCCAGCTTGCGCATTATGCCTTTCCGACCAGCTCAACGCCCGAACGCTCA
257 GGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGAACGCTCG
16761497 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTT
322 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGATCGAGGGTT
* * *
16761562 ACGGACAGTAAGATCGATAGCAT-GCGAGGGGCGATCGGGCTGATCCCTAGCTTGCGCATTCTGC
386 ACGGACAGTAGGATCGACAGCATCGC-AGGGG-GATCGGGCTGGTCCCTAGCTTGCGCATTCTGC
* * * *
16761626 CTCTCCGACCGGTTGAGCACCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
449 CTCTCCGACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
*
16761691 CCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGACCAGATCGAGGGTTACGGTAGC
514 CCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGATCGAGGGTTACGGTA--
*
16761756 AGGACCAGCAGCAAGATCGACAGCACGCAGTGAGGGATCGGGTTGATCCTCGGCTTGCGCATTCT
577 AGGACCAGCAG--AGATCGACAGCACGCAG-GAGGGATCGGGCTGATCCTCGGCTTGCGCATTCT
* *
16761821 GCCTCTCTGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCA
639 GCCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GAGGTTCA
* * * * *
16761886 TTCCCTATCTAAG-CCCAGTC-GGATCGAGGGTTGTGGCAGCAAGACCGACAACGGGATCGGCAG
703 TTCCATGTCTAAGCCCCAG-CAGGATCGAGGGTTGTGGTAGCAAGACCG-CAGCGGGATCGACAG
* * * * * *
16761949 CACGTAAAGGAGGATCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCGATCGACCT-TTCCG
766 CACGTAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCCTCTTCAG
**
16762013 ATCGGTTGAGCAC
831 -TCGGTTGAGTGC
* ** * *
16762026 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
* *
16762091 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGATAGCAGGATTGGCAGCGGGGGGGA
66 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTT--GATAGC---A-T-GCA---GGGGGGA
* * ** * * * *
16762156 CCGGGCTGATCCCTAGCTTGCGCATTCTACCTCTCC-GACTGACTGAGCACCCGCACATCCGTTT
121 ACGGGCCGATCCCCGGCTTACGCATTCTA-CTCTCCGGTC-GGCTGAGCACCCGCACACCCGTTT
* *
16762220 CATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATG
184 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCA----G--C--GGG--A--
* * * * * *
16762285 GCAGTAGGACCGATAGCACACAGAGGGGGATCAGGCCGATCCCTA-CTTGCGCATTATGCCTCTC
237 -C----CGACCGACA-CACATAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTC
* * * *
16762349 CGACCGACCTCTTCAGTTGGCTGACTGCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGG
296 CGACC-A--GC-TCA--------AC-GCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
16762414 AGTTCATCTCCAGTCTAAGCATACAGAGTTTATTCCCTGTCTAAGATCGGACTGGACCGAGGGTT
348 AGTTCAT-TCCAG--T---C-T--A-AG---A-------TC--AGATCGGA-T----CGAGGGTT
* *
16762479 AC-GACAGTAGGATCGACAGC-TCGCAGAGGGGA-CTGGGCTGGTCTCC-GGCTTACGCATTCTG
386 ACGGACAGTAGGATCGACAGCATCGCAG-GGGGATC-GGGCTGGTC-CCTAGCTTGCGCATTCTG
* * * * * * *
16762540 CCTCTCCGACCGGTTGAGTGCCCGCATGCACATTTCGTGGGTTAGCTTACGCATACGAAGTTCAT
448 CCTCTCCGACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* *
16762605 TCCATGTCTAAGCATACAGAGTTCATT-CCAGTCTAAGATCAGATC-GAATCGAGGGTT---GT-
513 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAG-ATCGAGGGTTACGGTA
* * * * * *
16762664 --GA-CAGCAG-GATCGACAGCACACAAGAGGGGACCGAGCCGATCCTTGGCTTGCGCATTCTGC
577 AGGACCAGCAGAGATCGACAGCACGCAGGA-GGGATCGGGCTGATCCTCGGCTTGCGCATTCTGC
* * * * * *
16762725 CTCTCCGGTCGGCTAAGCGTCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGGGTTCATT
641 CTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGA-GGTTCATT
* * * * *
16762790 CCATGTCTAAGCCCCAGCAGGA-CTGAGGGTTGTCGTAGCAAGACCGGTAGTGGAATTGACAGCA
705 CCATGTCTAAGCCCCAGCAGGATC-GAGGGTTGTGGTAGCAAGACC-GCAGCGGGATCGACAGCA
* * * *
16762854 CGTAGAGGGGGACCGGGCTAATCCTCGACTTGCGCATTATGGCTCTCCGATCGGCCTCGTCAGTC
768 CGTAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCCTCTTCAGTC
*
16762919 GGCTGAGTGC
833 GGTTGAGTGC
* *
16762929 CCGCACACTCGTTTCGTGGGTTGA-TGTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGA
1 CCGCACGCTCGTTTCATGGGTTGACT-TAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * *
16762993 GTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTAGCAGCACGCAGGGGGGATCGGGCC
65 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTG-A-TAGCATGCAGGGGGGAACGGGCC
* * * * * *
16763058 GATCCCCGGGTTGCGCATTCCACCTCTCCGGTGGGGCTGAGCACCCACACACCCGTTTCGTGGGT
128 GATCCCCGGCTTACGCATTCTA-CTCTCCGGT-CGGCTGAGCACCCGCACACCCGTTTCATGGGT
* * ** * *
16763123 TGGCTTAGGCATAGGGAGTTCATTCTATGTTTAAGCCCCAACGGGATTG-GC-A-ACACGTAGAG
191 TGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCGGGACCGACCGACACACATAGAG
* * * * * * * *
16763185 GGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTGATCGGCTCAACGCCCGAACACTT
256 GGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGAACGCTC
16763250 GTTTCGTGGGTTGACTTAGGC
321 GTTTCGTGGGTTGACTTAGGC
16763271 CCCAGTCGGA
Statistics
Matches: 1732, Mismatches: 247, Indels: 233
0.78 0.11 0.11
Matches are distributed among these distances:
847 2 0.00
848 152 0.09
849 337 0.19
850 107 0.06
851 6 0.00
852 1 0.00
853 1 0.00
854 4 0.00
856 1 0.00
857 5 0.00
858 93 0.05
859 1 0.00
862 1 0.00
863 28 0.02
864 3 0.00
866 94 0.05
867 1 0.00
868 2 0.00
869 106 0.06
870 13 0.01
871 2 0.00
872 3 0.00
873 1 0.00
875 24 0.01
876 23 0.01
877 2 0.00
878 25 0.01
879 25 0.01
881 1 0.00
882 3 0.00
886 1 0.00
888 3 0.00
890 3 0.00
891 44 0.03
892 3 0.00
893 1 0.00
895 37 0.02
896 66 0.04
897 1 0.00
898 3 0.00
899 1 0.00
900 3 0.00
901 4 0.00
902 111 0.06
903 192 0.11
904 4 0.00
905 6 0.00
906 2 0.00
910 2 0.00
911 2 0.00
912 8 0.00
913 2 0.00
914 27 0.02
915 106 0.06
916 23 0.01
917 10 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (842 bp):
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGATAGCATGCAGGGGGGAACGGGCCGAT
CCCCGGCTTACGCATTCTACTCTCCGGTCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCT
TAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCGGGACCGACCGACACACATAGAGGGGGA
CCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAACGCCCGAACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGA
CAGTAGGATCGACAGCATCGCAGGGGGATCGGGCTGGTCCCTAGCTTGCGCATTCTGCCTCTCCG
ACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGATCGAGGGTTACGGTAAGGACCAGC
AGAGATCGACAGCACGCAGGAGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGATC
GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGGTTCATTCCATGTCTAAG
CCCCAGCAGGATCGAGGGTTGTGGTAGCAAGACCGCAGCGGGATCGACAGCACGTAGAGGGGGAC
CGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCCTCTTCAGTCGGTTGAGTGC
Found at i:16762091 original size:26 final size:26
Alignment explanation
Indices: 16762055--16762107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16762045 GTTGACTTAG
*
16762055 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16762081 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16762107 G
1 G
16762108 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16762627 original size:26 final size:25
Alignment explanation
Indices: 16762590--16762641 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
16762580 GTTAGCTTAC
16762590 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
16762616 GCATAC-AGAGTTCATTCCAGTCTAA
1 GCATACGA-AGTTCATTCCAGTCTAA
16762641 G
1 G
16762642 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:16762693 original size:184 final size:183
Alignment explanation
Indices: 16762375--16762801 Score: 468
Period size: 184 Copynumber: 2.3 Consensus size: 183
16762365 TTGGCTGACT
* ** * *
16762375 GCCCGCACGCTCGCTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAAGCATACA
1 GCCCGCACGCACATTTCGTGGGTTG-CTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCATACA
* * * * * * *
16762439 GAGTTTATTCCCTGTCTAAGATCGGACTGGACCGAGGGTTACGACAGTAGGATCGACAGCTCGCA
64 GAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGACAGCAGGATCGACAGCACACA
* * * * * * *
16762504 GAGGGGACTGGGCTGGT-CTCCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGT
129 GAGGGGACCGAGCCGATCCT-CGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGC
* *
16762559 GCCCGCATGCACATTTCGTGGGTTAGCTTACGCATACGAAGTTCATTCCATGTCTAAGCATACAG
1 GCCCGCACGCACATTTCGTGGGTT-GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAG
* **
16762624 AGTTCATT-CCAGTCTAAGATCAGA-TCGAATCGAGGGTTGTGACAGCAGGATCGACAGCACACA
65 AGTTCATTCCCAGTCTAAGATCAGACT-GAACCGAGGGTTACGACAGCAGGATCGACAGCACAC-
* * **
16762687 AGAGGGGACCGAGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
128 AGAGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGC
* * *
16762743 GTCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC-AGGGTTCATTCCATGTCTAAGC
1 GCCCGCACGCACATTTCGTGGGTT-GCTTAGGCATACGA-AGTTCATTCCATGTCTAAGC
16762802 CCCAGCAGGA
Statistics
Matches: 203, Mismatches: 34, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
182 1 0.00
183 48 0.24
184 151 0.74
185 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (183 bp):
GCCCGCACGCACATTTCGTGGGTTGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGACAGCAGGATCGACAGCACACAGA
GGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGC
Found at i:16762995 original size:26 final size:26
Alignment explanation
Indices: 16762958--16763010 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16762948 GTTGATGTAG
16762958 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16762984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16763010 G
1 G
16763011 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16763589 original size:26 final size:26
Alignment explanation
Indices: 16763559--16763610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16763549 GTTGGCCTAG
*
16763559 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16763585 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16763611 TATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16763974 original size:26 final size:26
Alignment explanation
Indices: 16763938--16763990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16763928 GTTGACTTAG
16763938 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16763964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16763990 G
1 G
16763991 GTTGGATAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16764332 original size:159 final size:158
Alignment explanation
Indices: 16763964--16764463 Score: 378
Period size: 159 Copynumber: 3.2 Consensus size: 158
16763954 CCCAGTCTAA
* * * * * * * *
16763964 GCATACGGAGTTCATTCCCA-GTCTAAGGTTGGAT-AAGACCGAGGGTTGCGACAGTAGAAT-GG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGA-ATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
16764026 CAGCACGCA-GGGGGACCGGGCC-GATGCCTAGCTTGCGCATTCTGCCTCTCCGGCCGG-CTGAG
64 CAGCAGGCAGGGGGGACCGGGCCAG-TCCCTAGCTTGTGCATTATGCCTCTTCGACCGGTC-GAG
** * * * * *
16764088 CACCCGCACGCCCGTTTCATGGGTTGGCCTAG
127 CACCCAAACGCTCATTTCGTGGGTTAGCTTAG
* * ** * * * * * * *
16764120 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTGGACCAAGGGATGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGATC-GAATCGAGGGTTGCGGCAGCAGGATCGAC
* * *
16764184 AGCAGGCAGAGGGGGATCGGGTC-GATCCCT-GACTTGTGCATTATGCCTC-TCTGGCCGG-CGC
65 AGCAGGCAG-GGGGGACCGGGCCAG-TCCCTAG-CTTGTGCATTATGCCTCTTC-GACCGGTCG-
** **
16764245 AGTGCTTAAACGCTCATTTCGTGGGTT-GACTTAG
125 AGCACCCAAACGCTCATTTCGTGGGTTAG-CTTAG
* *
16764279 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
16764343 AGCATGCAGGGGGGACCGGGCCAGTCCCTAGCTTGTGTATTCTGCCTCTTCGACCGGTTGAGCAC
65 AGCAGGCAGGGGGGACCGGGCCAGTCCCTAGCTTGTGCATTATGCCTCTTCGACCGGTCGAGCAC
* *
16764408 CCATACGCTCATTTTGTGGGTTAGCTTAG
130 CCAAACGCTCATTTCGTGGGTTAGCTTAG
16764437 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16764464 CATACAGAGT
Statistics
Matches: 267, Mismatches: 59, Indels: 34
0.74 0.16 0.09
Matches are distributed among these distances:
155 4 0.01
156 38 0.14
157 12 0.04
158 89 0.33
159 118 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCAGGATCGACA
GCAGGCAGGGGGGACCGGGCCAGTCCCTAGCTTGTGCATTATGCCTCTTCGACCGGTCGAGCACC
CAAACGCTCATTTCGTGGGTTAGCTTAG
Found at i:16764468 original size:26 final size:26
Alignment explanation
Indices: 16764437--16764489 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16764427 GTTAGCTTAG
*
16764437 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16764463 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16764489 G
1 G
16764490 ATCAGACTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16764683 original size:26 final size:26
Alignment explanation
Indices: 16764634--16764686 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16764624 GTTGACTTAG
* *
16764634 GCATACGGAGTTCATCCCTGGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
16764660 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
16764686 G
1 G
16764687 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:16764717 original size:197 final size:196
Alignment explanation
Indices: 16764423--16764885 Score: 512
Period size: 196 Copynumber: 2.4 Consensus size: 196
16764413 CGCTCATTTT
*
16764423 GTGGGTT-AGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATAC-AGAGTTCATTCCCAGT
1 GTGGGTTGA-CTTAGGCATACGGAGTTCA-TCCCTGGTCTAAGCATACGA-AGTTCATTCCCAGT
* * * **
16764485 CTAAGATCAGACTGTATCGAAGGTTGCGATAGCAGGACCAACAATAGGATCAACAGCATGTAGGA
63 CTAAGATTAGACTGGATCGAAGGTTGCGATAGCAGGACCAACAATAGGATCAACAGCA--CACAA
* * * * * ** *
16764550 GG-GGATCAGGTCGATCCCCGGCTTGTGCATTTTACCTCTCCGGCC-GACTGAGTGCCTGCACGC
126 GGTGGAACAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAG-CTGAGCACCCGCACGC
16764613 TCGTTCC
190 TCGTTCC
16764620 GTGGGTTGACTTAGGCATACGGAGTTCATCCCTGGTCTAAGCATACGAAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCTGGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* ** * * *
16764685 AGATTGGA-TCGGATCG-AGGTTTGC-AGTAGCAGGACCAGTAGTAGGATCGACTGCACACAAGG
66 AGATTAGACT-GGATCGAAGG-TTGCGA-TAGCAGGACCAACAATAGGATCAACAGCACACAAGG
* * * *
16764747 TGGAACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCACCCGCACGCTTG
128 TGGAACAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACGCTCG
*
16764812 TTTC
193 TTCC
* * * *
16764816 ATGGGTTGTCTTAGGCATACGGAGTTCATTCC-GTGTCTAAGCATACGGAGTTCATTCCCAGTCT
1 GTGGGTTGACTTAGGCATACGGAGTTCATCCCTG-GTCTAAGCATACGAAGTTCATTCCCAGTCT
16764880 AAGATT
65 AAGATT
16764886 TTGAGCCACG
Statistics
Matches: 228, Mismatches: 29, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
195 5 0.02
196 126 0.55
197 95 0.42
198 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.26
Consensus pattern (196 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATCCCTGGTCTAAGCATACGAAGTTCATTCCCAGTCTA
AGATTAGACTGGATCGAAGGTTGCGATAGCAGGACCAACAATAGGATCAACAGCACACAAGGTGG
AACAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACGCTCGTTC
C
Found at i:16764857 original size:196 final size:194
Alignment explanation
Indices: 16764381--16764885 Score: 545
Period size: 197 Copynumber: 2.6 Consensus size: 194
16764371 TAGCTTGTGT
* * ** * *
16764381 ATTCTGCCTCTTCGACCGGTTGAGCACCCATACGCTCATTTTGTGGGTTAGCTTAGGCATACGGA
1 ATTCTGCCTCTTCGGCC-GCTGAGCACCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGA
* *
16764446 GTTCATTCCATGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACTGTATCGAAGGTT
64 GTTCATTCCATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATTAGACTGGATCGAAGGTT
* ** * * *
16764510 GCGATAGCAGGACCAACAATAGGATCAACAGCATGTAGGAGGGGATCAGGTCGATCCCCGGCTTG
128 GCGATAGCAGGACCAACAATAGGATCAACAGCA-GCACAAGGGGAACAGGCCGATCCCCGACTTG
*
16764575 TGC
192 CGC
* * * ** * *
16764578 ATTTTACCTCTCCGGCCGACTGAGTGCCTGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGA
1 ATTCTGCCTCTTCGGCCG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGA
* *
16764643 GTTCA-TCCCTGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGA-TCGGATCG-AGGT
64 GTTCATTCCAT-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACT-GGATCGAAGG-
** * * * *
16764705 TTGC-AGTAGCAGGACCAGTAGTAGGATCGACTGCA-CACAAGGTGGAACGGGCCGATCCCCGAC
126 TTGCGA-TAGCAGGACCAACAATAGGATCAACAGCAGCACAAGG-GGAACAGGCCGATCCCCGAC
16764768 TTGCGC
189 TTGCGC
* *
16764774 ATTCTGCCTCTTCGGCCAGCTGAGCACCCGCACGCTTGTTTCATGGGTTGTCTTAGGCATACGGA
1 ATTCTGCCTCTTCGGCC-GCTGAGCACCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGA
* *
16764839 GTTCATTCCGTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
64 GTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATT
16764886 TTGAGCCACG
Statistics
Matches: 256, Mismatches: 42, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
195 4 0.02
196 125 0.49
197 126 0.49
198 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (194 bp):
ATTCTGCCTCTTCGGCCGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTGGATCGAAGGTTGCG
ATAGCAGGACCAACAATAGGATCAACAGCAGCACAAGGGGAACAGGCCGATCCCCGACTTGCGC
Found at i:16764865 original size:26 final size:26
Alignment explanation
Indices: 16764830--16764882 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16764820 GTTGTCTTAG
**
16764830 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16764856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16764882 G
1 G
16764883 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16771587 original size:26 final size:26
Alignment explanation
Indices: 16771558--16771610 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16771548 GTTGGCTTAG
16771558 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16771584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16771610 G
1 G
16771611 ATGGATGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16771958 original size:26 final size:26
Alignment explanation
Indices: 16771922--16771974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16771912 GTTGACTTAG
*
16771922 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16771948 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16771974 G
1 G
16771975 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16772093 original size:182 final size:182
Alignment explanation
Indices: 16771402--16772131 Score: 614
Period size: 182 Copynumber: 4.0 Consensus size: 182
16771392 GTTGACTTAG
* * * * * *
16771402 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGAT-AGATCGGACCGAGGGTTGCAGTAGCAGGATCGACA
* *
16771467 GCACGCAGGGGGACC-AGGCCGATCCTCAGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCG-C
65 GCAAGCAGGGGGACCGA-GCCGATCCTCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
16771530 CGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
16771584 GCATACGGAGTTCATTCCCAGTCTAAGATGGAT-GAACCGAGGGTTGCAGGCAGTAGCAGGATCG
1 GCATACAGAGTTCATTCCCAGTCTAAGATAGATCGGACCGAGGGTT----GCAGTAGCAGGATCG
* * * * *
16771648 GCAGCACG-A-GGGGACCG-GCCGATCC-CCGCTTGCACATTTTACCTCTCCGATCGGCTGAGCG
62 ACAGCAAGCAGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCG
* *
16771709 CCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * ** ** *
16771765 GC-CCCAGCCGGTCGA----GGGT-TGTGGTAG--CAGGACC----G--GCAG-AG--GGATCGA
1 GCATACAG-AGTTC-ATTCCCAGTCTAAGATAGATC-GGACCGAGGGTTGCAGTAGCAGGATCGA
* * * * * *
16771813 CAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTATGCCTCTTCGGCCAGCCTCTC
63 CAGCAAGC--AGGGGGACCGAGCCGATCCTCGGCTT--GCA-CAT---TC-T------GCCTCTC
** * * *
16771878 CGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
113 CGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAT
16771942 GTCTAA
177 GTCTAA
16771948 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-G-AGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGAT-AGATCGGACCGAGGGTTGCAGTAGCAGGATCGACA
* * * *
16772011 GCAATCAGTGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCTGCTGAGCGCC
65 GCAAGCAG-GGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
16772076 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16772130 GC
1 GC
16772132 CCCCCAGACT
Statistics
Matches: 433, Mismatches: 66, Indels: 98
0.73 0.11 0.16
Matches are distributed among these distances:
164 13 0.03
166 2 0.00
167 5 0.01
168 7 0.02
169 7 0.02
170 4 0.01
172 3 0.01
173 3 0.01
176 1 0.00
177 9 0.02
178 2 0.00
180 45 0.10
181 69 0.16
182 106 0.24
183 71 0.16
184 25 0.06
186 2 0.00
187 3 0.01
188 3 0.01
189 7 0.02
190 1 0.00
192 2 0.00
193 3 0.01
194 5 0.01
195 22 0.05
196 13 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (182 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATAGATCGGACCGAGGGTTGCAGTAGCAGGATCGACAG
CAAGCAGGGGGACCGAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:16772423 original size:158 final size:156
Alignment explanation
Indices: 16771948--16772445 Score: 519
Period size: 157 Copynumber: 3.2 Consensus size: 156
16771938 CCCAGTCTAA
* *
16771948 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCG-AGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGGGTTGCGCAGCAGGATCGACA
* * *
16772011 GCA-ATCAGTGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCTGCTGAGCGC
65 GCACGT-AGGGGGGACCG-GCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
16772075 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** ** * * * *
16772104 GCATAGGGAGTTCATT-CCATGTCTAAG--CCCCCCAGACTAAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACTGAGGGTTG-CGCAGCAGGATCGAC
* * * * * * * * * *
16772166 AGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCACATTATGCCTGTTCGGTCGGTTCAACA
64 AGCACGTAG-GGGGGACC-GGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
16772231 CCCGCACGCTCATTTCGTGGGTTGACTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16772261 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCG-CAGCAGGATCGACA
**
16772326 GCACGTAGGGGGAGACCAGGCCGATCC-CTGGCTT-CGCATTCTGCCTCTCCGACCGGCTGAGCG
65 GCACGTAGGGGG-GACC-GGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
16772389 CCCGCACGCTCGTTTCATTGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
16772419 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16772446 CATACAGAGT
Statistics
Matches: 269, Mismatches: 59, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
154 11 0.04
155 4 0.01
156 37 0.14
157 92 0.34
158 76 0.28
159 49 0.18
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGCAGCAGGATCGACAG
CACGTAGGGGGGACCGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16772450 original size:26 final size:26
Alignment explanation
Indices: 16772419--16772471 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16772409 GTTGGCTTAG
*
16772419 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16772445 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16772471 G
1 G
16772472 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16778901 original size:26 final size:26
Alignment explanation
Indices: 16778865--16778915 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16778855 TGACTTAGGT
*
16778865 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
* *
16778891 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
16778916 ATTAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:16779344 original size:26 final size:26
Alignment explanation
Indices: 16779314--16779366 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16779304 GTTGGCTTAG
* **
16779314 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16779340 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16779366 G
1 G
16779367 TGTTGAGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16780398 original size:158 final size:155
Alignment explanation
Indices: 16780017--16780508 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 155
16780007 CTCAGTCTAA
* * * * *
16780017 GCATACGGAGTTCATTCCCAATGTAAGATCGGACCAGACTGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGG-TGC-GCAGTAGGATCCACA
* *
16780082 GCA--CATAGGGGAGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
64 GCACGCAGAGGGG-GACC-GGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCG
* * *
16780145 CCCGTACG-TCCATTTCGTTGGTTGCCTAG
127 CCCGTACGCT-CGTTTCGTGGGTTGCTTAG
* * ** * * * *
16780174 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTGG-CCGGAGCGAGGGTAGGGGCAG-CGG-GCCT
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATTGGACCGGACCGAGGGT--GCGCAGTAGGATCC-
* * * * * *
16780235 GACAGCACGCAGAGGGGGATCGGACCGATCCCTGGCTTGCACATTATGCCTCTCTGGTCGGCTCA
61 -ACAGCACGCAGAGGGGGACCGG-CCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGA
16780300 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
124 GCGCCCGTACGCTCGTTTCGTGGGTTG-CTTAG
*
16780333 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAGGGCTGCGCAGTAGGATCCACAG
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGG-TGCGCAGTAGGATCCACAG
* * * * * * *
16780398 CACGCAGGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTTCCTCTCTGACCGGTTGAGCACC
65 CACGCAGAGGGGGACC-GGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCGCC
**
16780463 CACACGCTCGTTTCGTGGGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTT-GCTTAG
*
16780491 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
16780509 ATGTCTAAGC
Statistics
Matches: 268, Mismatches: 49, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
155 1 0.00
156 6 0.02
157 41 0.15
158 166 0.62
159 48 0.18
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTGCGCAGTAGGATCCACAGC
ACGCAGAGGGGGACCGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGCTTAG
Found at i:16780873 original size:513 final size:512
Alignment explanation
Indices: 16780103--16781054 Score: 1180
Period size: 513 Copynumber: 1.9 Consensus size: 512
16780093 AGACCGGGCC
* * * * *
16780103 GATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGTCCATTTCGTTGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTCAGATCGGCTGAGCACCCGTACGCCCATTTCGTGGGTT
* ** * *
16780168 GCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTGGCCGGAGCGAGGGTAGGGGCAGCGGGC
66 GCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGCAGCGGGC
* * * *
16780233 CTGACAGCACGCAGAGGGGGATCGGACCGATCCCTGGCTTGCACATTATGCCTCTCTGGTCGGCT
131 CTGACAGCACGCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCTGGCCGGCT
* * * * * *
16780298 CAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATT
196 CAGCACCCGTACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAATCTAAGATC
* * * *
16780363 GGATCGGACCGAGGGCTGC-GCAGTAGGATCCACAGCACGCAGGGGGGGACCAGGCCGATCCCCG
261 AGACCGGACCGAGGGCTGCAGCAGCAGGATCAACAGCACGCA-GGGGGGACCAGGCCGAT-CCCG
* * * * **
16780427 A-CTTACGCATTCTTCCTC-TCTGACCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTA
324 AGCTTACGCAATCTGCCTCTTC-GACCAGCTGAGCACCCACACGCTCGTTTAATGGGTTGGCTTA
* * *
16780490 GGCATACGGAGTTTATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGA
388 GGCATACAGAGTTCATTCCATGTCTAAGAATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGA
16780555 TCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCAATAGCACGCAGGAGGGATCGAGCT
453 TCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCAATAGCACGCAGGAGGGATCGAGCT
* *
16780615 GATCCCCGGCTTATGCATTCTGCCTCTCTAG-TCGGCTGAGCACCCGTACGCCCGTTTCGTGGGT
1 GATCCCCGGCTTACGCATTCTGCCTCTC-AGATCGGCTGAGCACCCGTACGCCCATTTCGTGGGT
* * * *
16780679 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATTGTGGCAGTGG
65 T-GCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGCAGCGG
* * * * * *
16780744 G-ATCGGCAGCACGTAGAGGGAGA-CTGGGCCAATCCTTCGCTTGCGCATTATGCCTC-CTCGGC
129 GCCT-GACAGCACGCAGAGGGAGATC-GGACCAATCCCTCGCTTGCACATTATGCCTCTCT-GGC
* * *
16780806 CGGCTCAGCACCCGTACACTCGTTTCGTAGGTTGACTTATACATACGAAGTTCATTCTCAGTCTA
191 CGGCTCAGCACCCGTACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAATCTA
* ** * * * ***
16780871 AGATCAGACCGGACCGAGGGTTGCATTAGCAGGATCAATAGCACGTAGTGGGGATTGGGCCGATC
256 AGATCAGACCGGACCGAGGGCTGCAGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGCCGATC
* * * * ** *
16780936 CCTAGCTTGCGCAATCTGCCTCTTCGGCTAGCTGAGTGCCCATACGCTCGTTTAATGGGTTGGCT
321 CCGAGCTTACGCAATCTGCCTCTTCGACCAGCTGAGCACCCACACGCTCGTTTAATGGGTTGGCT
* **
16781001 TAGGCATATAGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCCCAGTCTA
386 TAGGCATACAGAGTTCATTCCATGTCTAAGAATACAAAGTTCATTCCCAGTCTA
16781055 CGATTTTGAG
Statistics
Matches: 365, Mismatches: 67, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
512 64 0.18
513 283 0.78
514 18 0.05
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (512 bp):
GATCCCCGGCTTACGCATTCTGCCTCTCAGATCGGCTGAGCACCCGTACGCCCATTTCGTGGGTT
GCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGCAGCGGGC
CTGACAGCACGCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCTGGCCGGCT
CAGCACCCGTACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAATCTAAGATC
AGACCGGACCGAGGGCTGCAGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGCCGATCCCGAG
CTTACGCAATCTGCCTCTTCGACCAGCTGAGCACCCACACGCTCGTTTAATGGGTTGGCTTAGGC
ATACAGAGTTCATTCCATGTCTAAGAATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGATCA
AGGGTTGCGACAGCAGGACCAGTAGCAGGATCAATAGCACGCAGGAGGGATCGAGCT
Found at i:16781730 original size:26 final size:26
Alignment explanation
Indices: 16781694--16781746 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16781684 GTTGACTTAG
16781694 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
16781720 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16781746 G
1 G
16781747 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16782052 original size:159 final size:159
Alignment explanation
Indices: 16781727--16782150 Score: 451
Period size: 159 Copynumber: 2.7 Consensus size: 159
16781717 TAAGCATACG
** * * * **
16781727 GAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
* * * * * * *** * *
16781791 AGAGGAGGACCGGG-CTGATCCCTGGCTTGCGCATTCTACCTTTTTTGGTCGGCTGAGTGTCCGT
65 AGAGGGGGACTGGGTC-GATCCCCGGCTTACGCATTCTGCC-TCTCCAGTCGGCTGAGTGCCCGC
* ** *
16781855 ACGCCCATTTCCTGGGTTGGCTTAGACATAGG
128 ACGCCCATTTCATACGTTGGCTTAGACATAGA
* *
16781887 GAGTTCATTCCATGTCTACGCCCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
1 GAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
* *
16781952 GAGGGGGACTGGGTCGATCCCCGGCTTACACATTCTGCCTCTCCAGTCGGTTGAGTGCCCGCACG
66 GAGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACG
* *
16782017 CCCATTTCATACGTTGGCTTAGGCATCGA
131 CCCATTTCATACGTTGGCTTAGACATAGA
* * * * * *
16782046 GAGTTCATTCCATGTCTAAGCCCCAGCTAGACCAAGGGTTGTGGTAGTGGGACC-AGCAACACGC
1 GAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGC
* *
16782110 AGAGGGGGA-TCCGGTCGATCCCCGGCTTACGCATTTTGCCT
65 AGAGGGGGACT-GGGTCGATCCCCGGCTTACGCATTCTGCCT
16782151 TTCCGGCCGA
Statistics
Matches: 221, Mismatches: 39, Indels: 9
0.82 0.14 0.03
Matches are distributed among these distances:
158 2 0.01
159 135 0.61
160 83 0.38
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
GAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA
GAGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACG
CCCATTTCATACGTTGGCTTAGACATAGA
Found at i:16782171 original size:159 final size:159
Alignment explanation
Indices: 16781855--16782224 Score: 415
Period size: 159 Copynumber: 2.3 Consensus size: 159
16781845 GAGTGTCCGT
* * * * * *
16781855 ACGCCCATTTCCTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTACGCCCCAACCGGACC
1 ACGCCCATTTCATGGGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
* * *
16781920 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTACACAT
66 AAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACTCGGTCGATCCCCGGCTTACACAT
* ** **
16781985 TCTGCCTCTCCAGTCGGTTGAGTGCCCGC
131 TCTGCCTCTCCAGCCGACTGAACGCCCGC
** * *
16782014 ACGCCCATTTCATACGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCCAGCTAGACC
1 ACGCCCATTTCATGGGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
* * *
16782079 AAGGGTTGTGGTAGTGGGACC-AGCAACACGCAGAGGGGGA-TCCGGTCGATCCCCGGCTTACGC
66 AAGGGTTGTGGCAGCGGGACCGA-CAACACGCAGAGGGGGACT-CGGTCGATCCCCGGCTTACAC
* * *
16782142 ATTTTGCCTTTCCGGCCGACTGAACGCCCGC
129 ATTCTGCCTCTCCAGCCGACTGAACGCCCGC
*** * *
16782173 ACGCTTGTTTCGTGGGTTGGCTTAGGCATAC-AGAGCTCATTCC-TAGTCTAAG
1 ACGCCCATTTCATGGGTTGGCTTAGGCAT-CGAGAGTTCATTCCAT-GTCTAAG
16782225 AGTTTGAGCC
Statistics
Matches: 176, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
158 3 0.02
159 172 0.98
160 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
ACGCCCATTTCATGGGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
AAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACTCGGTCGATCCCCGGCTTACACAT
TCTGCCTCTCCAGCCGACTGAACGCCCGC
Done.