Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 142 of 402
Found at i:16782945 original size:26 final size:26
Alignment explanation
Indices: 16782894--16782946 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16782884 GTTAACTTAG
*
16782894 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGCCTAA
*
16782920 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGAAGTTCA-TCCCTAGCCTAA
16782946 G
1 G
16782947 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGCCTAA
Found at i:16783215 original size:159 final size:159
Alignment explanation
Indices: 16782960--16783581 Score: 587
Period size: 159 Copynumber: 3.9 Consensus size: 159
16782950 GAACCAAATC
* * * * ** ** * *
16782960 GAGGGTTGCGACAACAGGATTGGCAGCACGTAGA-GGGGATTGGGTCGATCC-CTGGCTTGTGCA
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGATCAGGCCGATCCTC-GGCTTGCGCA
* * * * * * *
16783023 TTCTGCCTCTCCAATCGGTTGAGCACCCATACGCCCGTTTCATGGGTTGGGTTAGGCATAGGGAA
65 TTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
*
16783088 TTCATTCCATGTCTAAGCCCCAGCCGGACT
130 TTCATTCCATGTCTAAGCCCCAGACGGACT
* * * *
16783118 GAGGGATGTGGCAGCGGGA-CTGGCAGCACACAGAAGGGGATC-GTGTCGATCCTCGGCTTGCGC
1 GAGGGTTGTGGCAGCAGGATC-GGCAGCACACAGAGGGGGATCAG-GCCGATCCTCGGCTTGCGC
* * *** * * * * * *
16783181 ATTATACCTCTCCGGTTGGCTCAGCGCCCGTACGCTCATTTCCTGGGTTGACTTAGGCATACGGA
64 ATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
* * ****
16783246 GTTCATT-CTTAGTGTAAGATTGA-ATCGGACT
129 GTTCATTCCAT-GTCTAAGCCCCAGA-CGGACT
** * * *
16783277 GAGGGTTACGGTAGCAGGATCAGCAGCACACA-AGGGGGATCAGGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGATCAGGCCGATCCTCGGCTTGCGCAT
* ** **
16783341 TCTGCCTCTCCGACCGGCTGAGCACCCACACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
* *
16783406 TCATTCCATGTCTAAGCCCCAGACAGATT
131 TCATTCCATGTCTAAGCCCCAGACGGACT
* * * *
16783435 GAGGGTTGTGGCAG-TGGTTTCGGCAGCACACAGAGGGGGAACAGGCCGATCTTCGGCTTGCGCA
1 GAGGGTTGTGGCAGCAGG-ATCGGCAGCACACAGAGGGGGATCAGGCCGATCCTCGGCTTGCGCA
* * * *
16783499 TTCTGCCTCTCCGACCGGTTGAGCGCCCGAACGCTCGTTTCATGGGTTTGGCTTAGGCATA-CGA
65 TTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGG-TTGGCTTAGGCATAGGGA
16783563 GTTCATTCCATGTCTAAGC
129 GTTCATTCCATGTCTAAGC
16783582 ATACGGAGTT
Statistics
Matches: 369, Mismatches: 82, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 144 0.39
159 207 0.56
160 16 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGATCAGGCCGATCCTCGGCTTGCGCAT
TCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
TCATTCCATGTCTAAGCCCCAGACGGACT
Found at i:16783584 original size:25 final size:26
Alignment explanation
Indices: 16783555--16783606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16783545 TTTGGCTTAG
16783555 GCATAC-GAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16783580 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16783606 G
1 G
16783607 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 18 0.72
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16784327 original size:26 final size:26
Alignment explanation
Indices: 16784291--16784341 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16784281 TGACTTAGGT
16784291 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
16784317 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16784342 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16785175 original size:26 final size:26
Alignment explanation
Indices: 16785139--16785194 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16785129 CGGGTTGACT
16785139 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
**
16785165 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
16785191 TAAG
1 TAAG
16785195 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:16785885 original size:26 final size:26
Alignment explanation
Indices: 16785848--16785900 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16785838 GTTGACTTAT
16785848 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16785874 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16785900 G
1 G
16785901 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16786190 original size:158 final size:158
Alignment explanation
Indices: 16786002--16786373 Score: 407
Period size: 158 Copynumber: 2.4 Consensus size: 158
16785992 TGACGGAGCG
* * * *
16786002 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
1 CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGAC
* *
16786066 CAGA-CTAAGGGTTGTGGCAGCCCGGGACCGA-AGCATGCAAAGGGGGACCAGGTCGATCCCCGG
65 CAGACCGAA-GGTTGTGGCAG--CAGGACCGACAGCATGCAAA-GGGGACCAGGTCGATCCCCGG
* *
16786129 CTTGCACATTAT-GCTC-TCCGCCAGCTCA-ACC
126 CTTGCACATTATACCTCTTCCGCCAGCT-AGACA
* ** * *
16786160 CCCGAATGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGAC
1 CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGAC
* * * * *
16786224 CGGACCGAAGGTTGTGGCAGCAGGATCGACAGCATGCATAGGGGACCGGGTCGGTCCCCGGCTTG
65 CAGACCGAAGGTTGTGGCAGCAGGACCGACAGCATGCAAAGGGGACCAGGTCGATCCCCGGCTTG
* * * *
16786289 CGCATTCTACCTCTTCGGCCAGCTAGGCA
130 CACATTATACCTCTTCCGCCAGCTAGACA
* * *
16786318 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTAA
1 CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
16786374 CCATATGGAG
Statistics
Matches: 178, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
156 36 0.20
157 18 0.10
158 118 0.66
159 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACC
AGACCGAAGGTTGTGGCAGCAGGACCGACAGCATGCAAAGGGGACCAGGTCGATCCCCGGCTTGC
ACATTATACCTCTTCCGCCAGCTAGACA
Found at i:16786467 original size:707 final size:707
Alignment explanation
Indices: 16784995--16786490 Score: 1865
Period size: 707 Copynumber: 2.1 Consensus size: 707
16784985 TAAGCCCTGC
* * * *
16784995 CGAACCGAGGGTTGTGGTAGCAGGACTAGCAAC-GGATCGACAACATGCAGAGGGGATCG-GCTG
1 CGAACCGAGGGTTGTGGTAGCAGGACCAGCAACAGGATCGACAGCATGTAGAGGGGACCGAGCTG
* ** * *
16785058 ATCCTCGGCTTGCGCATTATACCTCTTCGACCGACCTCTCCAGTCGGTTGAGCGTCTGCACGCTC
66 ATCCTCGGCTTGCGCATTATACCTCTTCGACCGACCTCTCCACTCGACTGAGCGACCGCACGCTC
* * * * *
16785123 GTTTTACGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTTCCA
131 ATTTCACGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCA
* ** * * *
16785188 GTCTAAGATCGGACCAGATTGAGGGTTGCGACAGTAGGATTGGTAGCATGCAGGGGGACCGGGCC
196 GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGACCGGGCC
* * *
16785253 GATCCCCGGCTTGCGCATTCTACCTCTCTAGCCGGCTGAGCGCCCGCACGCCCATTTCATGGGTT
261 GATCCCCGGCTTGCGCATTCTACCTCTCGAGCCGACGGAGCGCCCGCACGCCCATTTCATGGGTT
* * *
16785318 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATTAAGGGTTGTGGCAGTGGG
326 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTGGCAGCGGG
* * * * *
16785383 ACCGACAGCATGCAGAGGGGGACCGGGCTGATCTCAGCTTGCTCATTATGCCTCTCCGGTCGGTC
391 ACCGACAGCATGCAAAGGGGGACCGGGCTGATCCCAGCTTGCACATTATGCCTCTCCGGCCGCTC
*
16785448 AACACCGTACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
456 AACACCGAACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
16785513 ACTGGATCGAGGTTATGGCAGCAGGATTGACAGCACGCAGGGGGGATCGGGTTGGTCCCCTACTT
521 ACCGGACCGAGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGGACCGGGTCGGTCCCCGACTT
* * * * *
16785578 GCGCATTCTGCCTCTTCGGCTGGTTGAACACCTGCACGTCGTTTCATGGGTTGGCTTAGGCATAC
586 GCGCATTCTACCTCTTCGGCAGCTAGAACACCCGCACGTCGTTTCATGGGTTGGCTTAGGCATAC
* * *
16785643 GGAGTTAATTCCATGTCTAAGCATATGGAGTTCATTCCCAGCATACGGAGCCCCAGT
651 AGAGTTAATTCCATGTCTAACCATATGGAGTTCATTCCCAGCATACAGAGCCCCAGT
* * * *
16785700 CGGACCGAGTGTTGTGGCAGCAGGATCGACAGCAA-A--ATCGACAGCATGTAGTAAGGGACCGA
1 CGAACCGAGGGTTGTGGTAGCAGGA-C--CAGCAACAGGATCGACAGCATGTAG-AGGGGACCGA
* * * * *
16785762 GCTGATCCTCGGCTTGTGCATTATACCTCTTCGGCCGACCTCTCGACT-GACTGAGC-ACCGTAT
62 GCTGATCCTCGGCTTGCGCATTATACCTCTTCGACCGACCTCTCCACTCGACTGAGCGACCGCAC
** * *
16785825 GCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATT
127 GCTCATTTCACGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
* *
16785890 CCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGACAGTTGGATCGATAGCACGCAGGGGGGACC
192 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCA-GGGGGACC
* * ** * * *
16785955 GGGCCGATCCCTGGCTTGTGCATTCTACCTCTTCGA-TTGACGGAGCGCCCGTACGCCCGTTTCG
256 GGGCCGATCCCCGGCTTGCGCATTCTACCTC-TCGAGCCGACGGAGCGCCCGCACGCCCATTTCA
16786019 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTGGC
320 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTGGC
* *
16786084 AGCCCGGGACCGA-AGCATGCAAAGGGGGACCAGG-TCGATCCCCGGCTTGCACATTATG-CTCT
385 AG--CGGGACCGACAGCATGCAAAGGGGGACCGGGCT-GAT-CCCAGCTTGCACATTATGCCTCT
* * * * * *
16786146 CC-GCCAGCTCAACCCCCGAATGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCA
446 CCGGCC-GCTCAA-CACCGAACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCA
* * * *
16786210 GTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCAGGATCGACAGCATGCATAGGGGACCGGGT
509 GTCTAAGATCAGACCGGACCG-AGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGGACCGGGT
* * *
16786275 CGGTCCCCGGCTTGCGCATTCTACCTCTTCGGCCAGCTAG-GCACCCGCACGCTCGTTTCGTGGG
573 CGGTCCCCGACTTGCGCATTCTACCTCTTCGG-CAGCTAGAACACCCGCACG-TCGTTTCATGGG
16786339 TTGGCTTAGGCATACAGAGTTAATTCCATGTCTAACCATATGGAGTTCATTCCCAGTC-TA-AGA
636 TTGGCTTAGGCATACAGAGTTAATTCCATGTCTAACCATATGGAGTTCATTCCCAG-CATACAGA
* **
16786402 -TCGGA-T
700 GCCCCAGT
** * * * * * *
16786408 CGAACCGAGGGTTACGATAGCAGGACCAGCAACAGGATCGATAGCACGTAGGGGGGACCGAACCG
1 CGAACCGAGGGTTGTGGTAGCAGGACCAGCAACAGGATCGACAGCATGTAGAGGGGACCGAGCTG
*
16786473 ATCCTCAGCTTGCGCATT
66 ATCCTCGGCTTGCGCATT
16786491 CTGCCTCTCT
Statistics
Matches: 669, Mismatches: 101, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
705 28 0.04
706 122 0.18
707 166 0.25
708 118 0.18
709 87 0.13
710 76 0.11
711 71 0.11
712 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (707 bp):
CGAACCGAGGGTTGTGGTAGCAGGACCAGCAACAGGATCGACAGCATGTAGAGGGGACCGAGCTG
ATCCTCGGCTTGCGCATTATACCTCTTCGACCGACCTCTCCACTCGACTGAGCGACCGCACGCTC
ATTTCACGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCA
GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGACCGGGCC
GATCCCCGGCTTGCGCATTCTACCTCTCGAGCCGACGGAGCGCCCGCACGCCCATTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTGGCAGCGGG
ACCGACAGCATGCAAAGGGGGACCGGGCTGATCCCAGCTTGCACATTATGCCTCTCCGGCCGCTC
AACACCGAACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGGACCGGGTCGGTCCCCGACTT
GCGCATTCTACCTCTTCGGCAGCTAGAACACCCGCACGTCGTTTCATGGGTTGGCTTAGGCATAC
AGAGTTAATTCCATGTCTAACCATATGGAGTTCATTCCCAGCATACAGAGCCCCAGT
Found at i:16788103 original size:26 final size:26
Alignment explanation
Indices: 16788063--16788115 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16788053 GTTAGCTTAG
16788063 GCATACGAAGCTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
* *
16788089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
16788115 G
1 G
16788116 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:16789192 original size:26 final size:26
Alignment explanation
Indices: 16789156--16789206 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16789146 GACTTAGGCA
16789156 TACGGAGTTCATCCCCAGTCTAAGAG
1 TACGGAGTTCATCCCCAGTCTAAGAG
*
16789182 TACGGAGTTCATTCCCAGTCTAAGA
1 TACGGAGTTCATCCCCAGTCTAAGA
16789207 TCGGACCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGAG
Found at i:16789656 original size:26 final size:26
Alignment explanation
Indices: 16789617--16789670 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16789607 TGGGTTGGCT
16789617 TAGGCATACAGAGTTCATTCCATGTC
1 TAGGCATACAGAGTTCATTCCATGTC
* * *
16789643 TAGGCATCCGGAGTTCATTCCCTGTC
1 TAGGCATACAGAGTTCATTCCATGTC
16789669 TA
1 TA
16789671 AGATCAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCATGTC
Found at i:16790289 original size:16 final size:15
Alignment explanation
Indices: 16790264--16790293 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
16790254 GCCTAACTGA
16790264 CGGCATTGGGGGTTC
1 CGGCATTGGGGGTTC
16790279 CGGCGATTGGGGGTT
1 CGGC-ATTGGGGGTT
16790294 GGGGGGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.17, G:0.50, T:0.27
Consensus pattern (15 bp):
CGGCATTGGGGGTTC
Found at i:16791470 original size:13 final size:13
Alignment explanation
Indices: 16791452--16791476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16791442 ACGCATTATG
16791452 CCTCTCCGGTCGA
1 CCTCTCCGGTCGA
16791465 CCTCTCCGGTCG
1 CCTCTCCGGTCG
16791477 GCTGAGCACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
CCTCTCCGGTCGA
Found at i:16791545 original size:26 final size:26
Alignment explanation
Indices: 16791515--16791567 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16791505 GTTGACTTAG
*
16791515 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16791541 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16791567 G
1 G
16791568 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16791842 original size:158 final size:158
Alignment explanation
Indices: 16791596--16792199 Score: 571
Period size: 158 Copynumber: 3.8 Consensus size: 158
16791586 TTACGACAGT
* * * *
16791596 AGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAACCG
1 AGGACCGGCAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGAGCATTATGCCTCTCCAGCCG
* ** * * * * * *
16791661 ACTAAGCGCCTGCAAGCCCGTTTCGTGGGTTGGCTTAGGCTTAGGGAATTGATTCCATGTCTAAG
66 ACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
*
16791726 CCCCAG-CTGGACCGATGGTTGTGGTAGC
131 CCCCAGTC-GGACAGATGGTTGTGGTAGC
* * * * *
16791754 -GAGACCGGTAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCAGTC
1 AG-GACCGGCAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGAGCATTATGCCTCTCCAGCC
*
16791818 GACTGAGCGCCCACACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
16791883 GCCCCAGTCGGATATATGGTTGTGGTAGC
130 GCCCCAGTCGGACAGATGGTTGTGGTAGC
* ** * * * *
16791912 AGGACCGCCAGCGGGTAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCTAGCC
1 AGGACCGGCAGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGAGCATTATGCCTCTCCAGCC
* * ** * *
16791977 GACTCAGCACCCGA-ACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATG--
65 GACTGAGCGCCC-ACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC-ATGTC
** * * **
16792039 TAAG-ATCAGATCGGACTGAGGGTTACGGTAGC
127 TAAGCCCCAG-TCGGACAGATGGTTGTGGTAGC
* * * * *
16792071 AGGATCGACAGCACGTAGGGGGGATCGGG-CTGGTCCCCGACTT-ACGCATTCTGCCTCTCC-GA
1 AGGACCGGCAGCACGCAGGGGGGATCGGGTC-GATCCCCGACTTGA-GCATTATGCCTCTCCAG-
* * ** * *
16792133 TCGACTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGG-GTTCCTTCCATATC
63 CCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTC
16792197 TAA
127 TAA
16792200 ACATATGGAG
Statistics
Matches: 365, Mismatches: 66, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 5 0.01
158 229 0.63
159 123 0.34
160 3 0.01
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGACCGGCAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGAGCATTATGCCTCTCCAGCCG
ACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGTCGGACAGATGGTTGTGGTAGC
Found at i:16792435 original size:26 final size:26
Alignment explanation
Indices: 16792385--16792436 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16792375 TGACTTAGGC
* *
16792385 ATACGGAGTTCATCCCCAGTGTAAGA
1 ATACGGAGTTCATCCCCAATCTAAGA
*
16792411 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGGAGTTCATCCCCAATCTAAGA
16792437 TCGGACCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGA
Found at i:16793405 original size:26 final size:26
Alignment explanation
Indices: 16793376--16793435 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
16793366 GTTGACTTAG
*
16793376 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16793402 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16793428 G-AT-CAGAG
1 GCATACAGAG
16793436 CAGACCGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 21 0.66
27 4 0.12
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16793693 original size:158 final size:157
Alignment explanation
Indices: 16793531--16793903 Score: 396
Period size: 157 Copynumber: 2.4 Consensus size: 157
16793521 AGCTTAACGC
* * * * *
16793531 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TC
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
* ** *
16793595 GGACCAGGGGTTGTGGCAGCAGGA-CTGACAGCATGCAGAGGGGGA-CCGACCAATCCCCGACTT
66 GGA-CAGAGGTTACGGCAGCAGGATC-GACAACATGCAG-GGGGGATCCGACCAATCCCCGACTT
* *
16793658 GTGCATTATGCCTCTTCGGCCGACTCAGCGT
128 GTGCATTATGCCTCTTCGACCGACTCAGC-A
* * * * * *
16793689 CCGCACGTTCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGAC
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGAC
* * * * * *
16793752 CGGACTGAGGTTACGGTAGTAGGATCGACAACATGCAGGGGGGATCGGGCCAATCCCTGACTTGT
65 CGGACAGAGGTTACGGCAGCAGGATCGACAACATGCAGGGGGGATCCGACCAATCCCCGACTTGT
* * *
16793817 GCATTCTGCCTCTTCGACTGACTGAGCA
130 GCATTATGCCTCTTCGACCGACTCAGCA
* * *
16793845 CCTACACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCA
1 CC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16793904 TATGGAGTTG
Statistics
Matches: 174, Mismatches: 34, Indels: 14
0.78 0.15 0.06
Matches are distributed among these distances:
156 11 0.06
157 110 0.63
158 50 0.29
159 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
GGACAGAGGTTACGGCAGCAGGATCGACAACATGCAGGGGGGATCCGACCAATCCCCGACTTGTG
CATTATGCCTCTTCGACCGACTCAGCA
Found at i:16793911 original size:26 final size:26
Alignment explanation
Indices: 16793875--16793927 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16793865 GTTGGCTTAG
16793875 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
16793901 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16793927 G
1 G
16793928 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16795045 original size:158 final size:158
Alignment explanation
Indices: 16794566--16795067 Score: 532
Period size: 158 Copynumber: 3.2 Consensus size: 158
16794556 CCTAGTCTAA
* * * *
16794566 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACTGGATCGAGGGTTGTGGCAGCAGGATTGAT
1 GCATATGGAGTTCATT-CCATGTCTAAGATAGGACCGGATCGAGGGTTGTGGCAGTAGGATCGAT
* * * *
16794630 AGCACCCAGAGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGACTGAGCGC
65 AGCACACAGAGGGGACCGGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGC
* *
16794695 CCGCACGC-CTGTTTTGTGGGTTGGCATAG
130 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * * * *
16794724 GCATAGGGGGTTCATTCCATGTCTAAGCCCCA-G-CCGGACCGAGGGTTGCGGCAGTGGGACCGG
1 GCATATGGAGTTCATTCCATGTCTAAG--ATAGGACCGGATCGAGGGTTGTGGCAGTAGGATCGA
* * * * * * *
16794787 TAGCACGCAGAAGGGGATCGGGTCGAT-CCTCGACTTGCGCATTATGCCTCTCCGATCGGCTCAA
64 TAGCACACAG-AGGGGACCGGGCCGATCCCT-GACTTGCACATTCTGCCTCTCCGATCGGCTGAG
*
16794851 CGCCCGCACGCTCGTTTCGTGGGTTGAG-TTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* *
16794883 GCATATGGAGTTCATTCCCA-GTCTAAGATAGGACCGGATCGAGGGTTGTGGTAGTAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATAGGACCGGATCGAGGGTTGTGGCAGTAGGATCGAT
* * * * * *
16794947 AGTACACAGGGGGGACCGGACCGATCCCTGACTTGCACATTCTACCTCTACGGTCGGCTGAGCGC
65 AGCACACAGAGGGGACCGGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
16795012 CTGTACGCTCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
16795041 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
16795068 CATACGAAGT
Statistics
Matches: 276, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 141 0.51
159 122 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATAGGACCGGATCGAGGGTTGTGGCAGTAGGATCGATA
GCACACAGAGGGGACCGGGCCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16795827 original size:26 final size:26
Alignment explanation
Indices: 16795777--16795827 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16795767 TGACTTAGGC
*
16795777 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAATCTAAGT
* * *
16795803 ATACGGAGTTTATTCCCAATGTAAG
1 ATACGGAGTTCATCCCCAATCTAAG
16795828 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGT
Found at i:16796110 original size:159 final size:158
Alignment explanation
Indices: 16795865--16796302 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 158
16795855 TAGGATCGAT
* * * * * * * * * * *
16795865 AGCATGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTTTGTCTCTTC-AGCCAGCTGAGTG
1 AGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGA-CCGGCTCAGCG
* * * *
16795929 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCTCAG-T
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGAC
*
16795993 CGGA-CTGAGGGCTGTGGCAACAAGACCGAC
129 CGGATC-GAGGGCTGTGACAACAAGACCGAC
* * * * *
16796023 AGCACGTTAAGGGGGACCGGGCCGGTCCCCGGCTTGTGCATTATGCCTCTCCGACTGGCTCAGCG
1 AGCACG-CAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
* *
16796088 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGAC
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGAC
* * * * *
16796152 CGGATCGAGGGTTGTGACAGCAGGATCGAT
129 CGGATCGAGGGCTGTGACAACAAGACCGAC
* * * * * * * * *
16796182 AGCACGCAGGGGGGACTGGGTCGATTCTCGACTTGCGCATTTTGCCTCTCCGACCGGTTGAGTGC
1 AGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
* * *
16796247 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCGTGTCTAAG
66 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16796303 CATACAGAGT
Statistics
Matches: 229, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 102 0.45
159 120 0.52
160 5 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCG
GATCGAGGGCTGTGACAACAAGACCGAC
Found at i:16796275 original size:158 final size:158
Alignment explanation
Indices: 16795803--16796302 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 158
16795793 CAGTCTAAGT
* * * * ** * *
16795803 ATACGGAGTTTATTCCCAATGTAAGATCAGACCGGATCGAGGGTTACGGTAGTAGGATCGATAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGC
* * * *
16795868 ATGCAGGGGGGA-TCGGGCCGA-TCCCTGGCTTGCGCATTTTGTCTCTTC-AGCCAGCTGAGTGC
66 ACGCAGGGGGGACT-GGGCCGATTCCC-GGCTTGCGCATTTTGCCTCTCCGA-CCGGCTGAGTGC
*
16795930 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * * * * * *
16795961 ATAGGGAGTTCATT-CCATGTCTAAGTCTCAG-TCGGA-CTGAGGGCTGTGGCAACAAGACCGAC
1 ATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATC-GAGGGTTGTGGCAGCAGGATCGAT
* * * * * * * * * *
16796023 AGCACGTTAAGGGGGACCGGGCCGGTCCCCGGCTTGTGCATTATGCCTCTCCGACTGGCTCAGCG
63 AGCACG-CAGGGGGGACTGGGCCGATTCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGTG
*
16796088 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
16796120 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGATCGATAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGC
* * * *
16796185 ACGCAGGGGGGACTGGGTCGATTCTCGACTTGCGCATTTTGCCTCTCCGACCGGTTGAGTGCCCG
66 ACGCAGGGGGGACTGGGCCGATTCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGTGCCCG
*
16796250 CACGCTCATTTCGTGGGTTGGCTTAGGC
131 CACGCTCGTTTCGTGGGTTGGCTTAGGC
**
16796278 ATAC-AGAGTTCATTCCGTGTCTAAG
1 ATACGA-AGTTCATTCCCAGTCTAAG
16796303 CATACAGAGT
Statistics
Matches: 272, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 140 0.51
159 119 0.44
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGC
ACGCAGGGGGGACTGGGCCGATTCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGTGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:16796312 original size:26 final size:26
Alignment explanation
Indices: 16796276--16796328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16796266 GTTGGCTTAG
**
16796276 GCATACAGAGTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16796302 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16796328 G
1 G
16796329 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16796492 original size:26 final size:26
Alignment explanation
Indices: 16796456--16796511 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16796446 TGGGTTGGCT
16796456 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
16796482 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16796508 TAAG
1 TAAG
16796512 ATTTTAAGCC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16799054 original size:26 final size:26
Alignment explanation
Indices: 16799018--16799070 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16799008 GTTGGCTGAG
16799018 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16799044 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16799070 G
1 G
16799071 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16799238 original size:26 final size:26
Alignment explanation
Indices: 16799202--16799254 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16799192 GTTGACTTAG
16799202 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
16799228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
16799254 G
1 G
16799255 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:16799319 original size:184 final size:184
Alignment explanation
Indices: 16798861--16799319 Score: 489
Period size: 184 Copynumber: 2.5 Consensus size: 184
16798851 GTTGACTTAG
* * * * *
16798861 GCATACAGAGTTCATT-CCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCAATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * ** * * ** ** ** *
16798925 GCATGCAGGGGGGACCGGGCCGGTCCCCAGCTTGCGCATTCTGGCTCTTCGACCGGTTGAGCACC
66 GCACGTAGGGGGGACTAGGCCGATCCCCAGCTTGCACATTCTACCTCCCCGACAAGCTGAGCACC
* * *
16798990 CGCACGCTCATTTCGTGAGTTGGCTGAGGCATACAGAGTTCATTCCATGTCTAA
131 CGCACACTCATTTCGTGAGTTGACTGAGGCATACAGAGTTCATCCCATGTCTAA
* * *
16799044 GCATACAGAGTTCATTCCCAGTCTAAGAT-TAGACCGGA-TCGAGGCTTGCGGCAGCAGGATCGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACT-GAGGGTTGCGGCAGCAGGATCGA
* * * * *
16799107 CTGCACGTAAGGGGGA-TCGAGTCGATCCCCAGCTTGCACATTTTACCTCCCCTG-CAAGCTGAG
64 CAGCACGTAGGGGGGACTAG-GCCGATCCCCAGCTTGCACATTCTACCTCCCC-GACAAGCTGAG
* * * *
16799170 CACCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCA-GTCTAA
127 CACCCGCACACTCATTTCGTGAGTTGACTGAGGCATACAGAGTTCAT-CCCATGTCTAA
* * ** *
16799228 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTGCGATAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
16799293 GCACGTAGGGGGGACTAGGCCGATCCC
66 GCACGTAGGGGGGACTAGGCCGATCCC
16799320 TGGTTTGCTC
Statistics
Matches: 224, Mismatches: 43, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
183 17 0.08
184 199 0.89
185 8 0.04
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGACTAGGCCGATCCCCAGCTTGCACATTCTACCTCCCCGACAAGCTGAGCACC
CGCACACTCATTTCGTGAGTTGACTGAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:16799575 original size:26 final size:26
Alignment explanation
Indices: 16799545--16799597 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16799535 GTTGGCTTAG
16799545 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16799571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16799597 G
1 G
16799598 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16800275 original size:26 final size:26
Alignment explanation
Indices: 16800245--16800297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16800235 GTCGACTTAG
*
16800245 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16800271 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16800297 G
1 G
16800298 ATGGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16800638 original size:26 final size:26
Alignment explanation
Indices: 16800588--16800640 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16800578 GTTGGCTTAG
*
16800588 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
16800614 GCATAC-AGAGTTCATTCCCA-ATCTAA
1 GCATACGA-AGTTCATT-CCATATCTAA
16800640 G
1 G
16800641 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:16801359 original size:26 final size:26
Alignment explanation
Indices: 16801322--16801374 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16801312 GTTGACTTAG
16801322 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16801348 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16801374 G
1 G
16801375 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16802232 original size:26 final size:26
Alignment explanation
Indices: 16802202--16802254 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16802192 GTTGGCTTAG
16802202 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16802228 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16802254 G
1 G
16802255 ATTGTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16803244 original size:158 final size:154
Alignment explanation
Indices: 16802951--16803482 Score: 459
Period size: 158 Copynumber: 3.4 Consensus size: 154
16802941 CCCAATCAAA
* ** * *
16802951 GCATATGGAGTTCATTCCCA-GTCTAAG-GTCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGG
* ** * * *
16803014 TAGCACGTAGGGACGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCG
64 TCGCACGTAGGGGGGACCGGG-CGATCCCC-TCTTGTGCATTCTGCCTCTCCGGC-GGCTGAGCG
*
16803079 CCCGCACGGCCGTTTTGTGGGTTGGCTTAG
126 CCAGCAC-GCCGTTTTGTGGGTTGGCTTAG
* * * *
16803109 GCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGGTC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTC
* * * *
16803174 GCACGTAGAGGGGGACCGGGCGGATCCCCTCATGCGCATTATGCCTCTCCGGTCGGCTTAGCGCC
66 GCACGTAG-GGGGGACCGGGC-GATCCCCTCTTGTGCATTCTGCCTCTCCGG-CGGCTGAGCGCC
* ** * *
16803239 AGCACGCTCATTTCATGGGTTGACTTAT
128 AGCACGC-CGTTTTGTGGGTTGGCTTAG
** * *
16803267 GCATACGGAGTTCATTTCCA-GTCTAAG-ATCGGACCGGACCGA-GGTT-TCGGTAGCAGGATC-
1 GCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGT-GGCAGCAGGATCG
* * * * * **
16803327 GACAGCACGTAGGGGGGACCAAGTCGAT-CCTTGGCTTGTGCATTCTGCGTCTCCGGCCAACTGA
63 GTC-GCACGTAGGGGGGACC-GGGCGATCCCCT--CTTGTGCATTCTGCCTCTCCGG-CGGCTGA
* * **
16803391 TCGCCTGCACTATCGTTTTGTGGGTTGGCTTAG
123 GCGCCAGCAC-GCCGTTTTGTGGGTTGGCTTAG
* *
16803424 GCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA
16803483 GCAGTAGCGG
Statistics
Matches: 297, Mismatches: 59, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
155 3 0.01
156 19 0.06
157 105 0.35
158 145 0.49
159 25 0.08
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTC
GCACGTAGGGGGGACCGGGCGATCCCCTCTTGTGCATTCTGCCTCTCCGGCGGCTGAGCGCCAGC
ACGCCGTTTTGTGGGTTGGCTTAG
Found at i:16804128 original size:26 final size:26
Alignment explanation
Indices: 16804092--16804144 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16804082 GTTGGCCTAG
16804092 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16804118 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16804144 G
1 G
16804145 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16804861 original size:26 final size:26
Alignment explanation
Indices: 16804825--16804877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16804815 GTTGACTTAG
16804825 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16804851 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16804877 G
1 G
16804878 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16805246 original size:159 final size:158
Alignment explanation
Indices: 16804851--16805246 Score: 404
Period size: 159 Copynumber: 2.5 Consensus size: 158
16804841 CCCAGTCTAA
* * **
16804851 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAGGATTTACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
16804916 GCATGCAGGGGGG-ATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCAT
65 GCATGCAGGGGGGAACCGAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACTGACTCAGCAG
*
16804980 CCGTACGCCCGTTTCATGGGTTGGCTTAG
130 CCGTACGCCCGTTTCATGGGTTGACTTAG
* *** * * * * * **
16805009 GCATAGGGAGTTCATTCCATGTCTAATCCCCAG-TCGGATCGAGGGTTGTGACAGCGGGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAA-GATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* *
16805073 AGCATGCAGAGGGGAACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGA-TCGACTCAGC
64 AGCATGCAGGGGGGAACCGAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACT-GACTCAGC
*
16805137 -GCCTGTACGCTCGTTTCATGGGTTGACTTAG
128 AGCC-GTACGCCCGTTTCATGGGTTGACTTAG
* * * * * *
16805168 TCATCCGGAGTTCATTCCAGTCTAAGATCGGACCGGACCAAGGGTTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGG-TTGCGGCAGCAGGATCGACA
16805233 GCATGCAGGGGGGA
65 GCATGCAGGGGGGA
16805247 CTAGGTCGGT
Statistics
Matches: 185, Mismatches: 46, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.02
158 74 0.40
159 108 0.58
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAG
CATGCAGGGGGGAACCGAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACTGACTCAGCAGC
CGTACGCCCGTTTCATGGGTTGACTTAG
Found at i:16805377 original size:26 final size:26
Alignment explanation
Indices: 16805329--16805379 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16805319 TTGGCCTAGG
**
16805329 CATACGGAGTTCACTCATTGTCTAAA
1 CATACGGAGTTCACTCACAGTCTAAA
* *
16805355 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCACTCACAGTCTAA
16805380 GATTGGATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCACTCACAGTCTAAA
Found at i:16805712 original size:26 final size:26
Alignment explanation
Indices: 16805683--16805735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16805673 GTTGACTTAG
16805683 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* *
16805709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
16805735 G
1 G
16805736 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:16806041 original size:159 final size:158
Alignment explanation
Indices: 16805833--16806212 Score: 378
Period size: 158 Copynumber: 2.4 Consensus size: 158
16805823 CGGCCGATTG
* * * * *
16805833 AGCGCCAGCACACCCAGTTTCTTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
1 AGCGCCCGCACACTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
** * * * *
16805898 AAGTCAGACTGAGGGTTGTGCCAGCG-GGATCTG-TAGCACGCAGAGGGGGACCGGG-C-AGATC
65 AAACCAGACTGAGGGTTGCGCCAG-GAAGAT-TGATAGCAAGCAG-GGGGGACCGGGTCGA-ACC
*
16805959 CTCCACTTGCACATTATGCCTAT-TCGG-TCAGCTC
126 CT-CACTTGCACATTATGCCTCTCT-GGCT-AGCTC
* * * **
16805993 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATC
1 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* ** **
16806057 AAACCAGACTGAGGGTTGCGGCAGGAAGATTGATAGCAAGCAGGGGGGATTGGGTCGAACCCTGG
65 AAACCAGACTGAGGGTTGCGCCAGGAAGATTGATAGCAAGCAGGGGGGACCGGGTCGAACCCTCA
* * * *
16806122 CTTGCGCATTCTGCCTCTCTGGCTGGCTG
130 CTTGCACATTATGCCTCTCTGGCTAGCTC
* *
16806151 AGCGCCCGCACACTCGTTTCGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16806213 ATGCGGAGTT
Statistics
Matches: 181, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
157 3 0.02
158 84 0.46
159 78 0.43
160 16 0.09
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
AACCAGACTGAGGGTTGCGCCAGGAAGATTGATAGCAAGCAGGGGGGACCGGGTCGAACCCTCAC
TTGCACATTATGCCTCTCTGGCTAGCTC
Found at i:16806189 original size:158 final size:156
Alignment explanation
Indices: 16805709--16806211 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 156
16805699 CCCAGTCTAA
* * * *
16805709 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAAACCGAGGGTTAGGGCAGCAGGATCTGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGACTGAGGGTT-GGGCAGGAGGATCTGT
* * * * * **
16805773 AGCACGCAGGGGGGATTGGGCTGAGCCCTGGCTTACGAATTCTACCTCTTCGGCCGATTGAGCGC
64 AGCACGCAGGGGGGATTGGGC-GAACCCTGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGC
* * *
16805838 CAGCACACCCAGTTTCTTGGGTT-GCCTTAG
128 CCGCACACTC-GTTTCGTGGGTTGGCC-TAG
* ** ** *
16805868 GCATAGGGAGTTCATTCCATGTCTAAGCCCAAGTCAGACTGAGGGTTGTGCCAGCG-GGATCTGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACTGAGGGTTG-GGCAG-GAGGATCTGT
** * ** * * * * *
16805932 AGCACGCAGAGGGGGACCGGGC-AGATCCTCCACTTGCACATTATGCCTATTCGG-TCAGCTCAG
64 AGCACGCAG-GGGGGATTGGGCGA-ACCCT-GGCTTGCGCATTCTGCCTCTTCGGCT-GGCTGAG
* * * *
16805995 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
125 CGCCCGCACACTCGTTTCGTGGGTTGGCCTAG
* *
16806027 GCATATGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACTGAGGGTTGCGGCAGGAAGAT-TGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGACTGAGGGTTG-GGCAGGAGGATCTG-
*
16806090 TAGCAAGCAGGGGGGATTGGGTCGAACCCTGGCTTGCGCATTCTGCCTC-TCTGGCTGGCTGAGC
63 TAGCACGCAGGGGGGATTGGG-CGAACCCTGGCTTGCGCATTCTGCCTCTTC-GGCTGGCTGAGC
16806154 GCCCGCACACTCGTTTCGTGGGTTGGCCTAG
126 GCCCGCACACTCGTTTCGTGGGTTGGCCTAG
16806185 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16806212 CATGCGGAGT
Statistics
Matches: 270, Mismatches: 58, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 5 0.02
158 88 0.33
159 133 0.49
160 44 0.16
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACTGAGGGTTGGGCAGGAGGATCTGTAG
CACGCAGGGGGGATTGGGCGAACCCTGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCCG
CACACTCGTTTCGTGGGTTGGCCTAG
Found at i:16806221 original size:26 final size:26
Alignment explanation
Indices: 16806185--16806237 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16806175 GTTGGCCTAG
16806185 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
*
16806211 GCATGCGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
16806237 G
1 G
16806238 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:16807798 original size:26 final size:26
Alignment explanation
Indices: 16807768--16807820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16807758 GTTGACTTAG
*
16807768 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16807794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16807820 G
1 G
16807821 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16808133 original size:343 final size:348
Alignment explanation
Indices: 16807394--16808137 Score: 819
Period size: 343 Copynumber: 2.1 Consensus size: 348
16807384 CGTTCACTCG
* *
16807394 TTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATT-CCATGTCTAAGCATATGGAGTTCATTCCC
1 TTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTCCC
* *** * * *
16807457 AGTTTAAGAACGGTTCGGACGGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAGGGGGGATTGG
64 AGTCTAAGAACGAACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGGATCGG
* * * * ** ** *
16807522 GCCGATAGCCGGCTTCCACATTTTACCTCTCCGGCCTGCTGAGCGCCCGTGCATTCGTTTCGTGG
129 GCCGATACCCGGCTTCCACATTCTACCTCTCCAGCCGGCTGAGCGCCCACGCACCCATTTCGTGG
* * * *
16807587 GTTGGCTTAGGCATACGGGGTTCATTCCATGTCTAACCCCTAGTCGGATTGAGGGTTGTGGTAGC
194 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCTAGCCGGACTGAGGGTTGTGGCAGC
** *
16807652 AGGACCGACAACGGGATAGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTATGCATTAT
259 AGG--CGAC-AC--G---GGCAGCACGCAGAAGGGGACCGGGCTGATCCCCAACTTACGCATTAT
* * * *
16807717 GCCTCTCCGGCTAGCTGAGTGCCTGCACGCTCG
316 GCCTCTCCGGCCAGCTCAGCGCCTGCACGCTCA
* * *
16807750 TTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
16807815 TCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCTGTAGCACGC-AGGGGGGATCGGGC
66 TCTAAGAACGAACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGGATCGGGC
* * * * *
16807879 C-AT-CCCTGGCTTGCGA-ATTCTGCCTCTCCAGTCGGCTGAGCTCCAGCACGC-CCCATTTCTT
131 CGATACCC-GGCTT-CCACATTCTACCTCTCCAGCCGGCTGAGCGCC--CACGCACCCATTTCGT
16807940 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-AGCCGGACTGAGGGTTGTGGC
192 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA-CCCCTAGCCGGACTGAGGGTTGTGGC
* * * * * *
16808004 AG-TGG-GAC-C-GGCAGCACGCAGAGGGGGATCGGGTTGATCCCCAACTTGCGTATTATGCCTC
256 AGCAGGCGACACGGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCAACTTACGCATTATGCCTC
* * *
16808065 TTCGGCCGGCTCAGCGCCTGCGCGCTCA
321 TCCGGCCAGCTCAGCGCCTGCACGCTCA
*
16808093 TTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAG
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
16808138 ATCAGACCAG
Statistics
Matches: 328, Mismatches: 53, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
343 106 0.32
349 1 0.00
351 3 0.01
353 2 0.01
354 31 0.09
355 79 0.24
356 103 0.31
357 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (348 bp):
TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGAACGAACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGGATCGGGC
CGATACCCGGCTTCCACATTCTACCTCTCCAGCCGGCTGAGCGCCCACGCACCCATTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCTAGCCGGACTGAGGGTTGTGGCAGCAG
GCGACACGGGCAGCACGCAGAAGGGGACCGGGCTGATCCCCAACTTACGCATTATGCCTCTCCGG
CCAGCTCAGCGCCTGCACGCTCA
Found at i:16808178 original size:159 final size:157
Alignment explanation
Indices: 16807794--16808187 Score: 409
Period size: 159 Copynumber: 2.5 Consensus size: 157
16807784 CCCAGTCTAA
* * *
16807794 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGACAGCAGGATCTGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGTGACAGCAGGATC-GC
*** * * * *
16807858 AGCACGCAGGGGGGATCGGGCCATCCCTGGCTTGCGAATTCTGCCTCTCCAGTCGGCTGAGCTCC
64 AGCACGCAGGGGGGATCGGGCCATCCCCAACTTGCGAATTATGCCTCTCCAGCCGGCTCAGCGCC
* *
16807923 AGCACGCCCCATTTCTTGGGTTGGCTTAG
129 AGCACGCCCCATTTCATGGGTTGACTTAG
** * ** *
16807952 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGACAGCAGGATC-G
** * * *
16808015 CAGCACGCAGAGGGGGATCGGGTTGATCCCCAACTTGCGTATTATGCCTCTTCGGCCGGCTCAGC
63 CAGCACGCAG-GGGGGATCGGG-CCATCCCCAACTTGCGAATTATGCCTCTCCAGCCGGCTCAGC
* * * *
16808080 GCCTGCGCG-CTCATTTCATGGGTTGACTTAT
126 GCCAGCACGCCCCATTTCATGGGTTGACTTAG
* * *
16808111 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGCTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCG-CA
*
16808176 GCACGTAGGGGG
65 GCACGCAGGGGG
16808188 ACCAAGCTGA
Statistics
Matches: 190, Mismatches: 38, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 63 0.33
159 83 0.44
160 41 0.22
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGCAG
CACGCAGGGGGGATCGGGCCATCCCCAACTTGCGAATTATGCCTCTCCAGCCGGCTCAGCGCCAG
CACGCCCCATTTCATGGGTTGACTTAG
Found at i:16808273 original size:157 final size:156
Alignment explanation
Indices: 16807794--16808294 Score: 474
Period size: 157 Copynumber: 3.2 Consensus size: 156
16807784 CCCAGTCTAA
* *
16807794 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GAACCGGACCGAGGGTTGCGACAGCAGGATCTG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ACCGGACTGAGGGTTGTGACAGCAGGATC-G
* * * *
16807857 TAGCACGCAGGGGGGATCGGGC-CATCCCTGGCTTGCGAATTCTGCCTCTCC-AGTCGGCTGAGC
63 CAGCACGCA-GGGGGATCGGGCTGATCCCCGACTTGCGAATTCTGCCTCTCCGA-TCGGCTGAGC
* * * *
16807920 TCCAGCACGCCCCATTTCTTGGGTTGGCTTAG
126 ACCTGCACG-CTCATTTCATGGGTTGGCTTAG
** * ** *
16807952 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGTGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGTGACAGCAGGATC-GC
* * * * * ** * *
16808016 AGCACGCAGAGGGGGATCGGGTTGATCCCCAACTTGCGTATTATGCCTCTTCGGCCGGCTCAGCG
64 AGCACGC--AGGGGGATCGGGCTGATCCCCGACTTGCGAATTCTGCCTCTCCGATCGGCTGAGCA
* * *
16808081 CCTGCGCGCTCATTTCATGGGTTGACTTAT
127 CCTGCACGCTCATTTCATGGGTTGGCTTAG
* * *
16808111 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGCTGTGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCG-C
* * ** * * * * *
16808175 AGCACGTAGGGGGACCAAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGACTGGGCACT
64 AGCACGCAGGGGGATCGGGCTGATCCCCGACTTGCGAATTCTGCCTCTCCGATCGGCTGAGCACC
* *
16808240 TGCACGCTCGTTTCGTGGGTTGGCTTAG
129 TGCACGCTCATTTCATGGGTTGGCTTAG
16808268 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16808295 CATACGGAGT
Statistics
Matches: 272, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 90 0.33
158 57 0.21
159 81 0.30
160 41 0.15
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGCAG
CACGCAGGGGGATCGGGCTGATCCCCGACTTGCGAATTCTGCCTCTCCGATCGGCTGAGCACCTG
CACGCTCATTTCATGGGTTGGCTTAG
Found at i:16808304 original size:26 final size:26
Alignment explanation
Indices: 16808268--16808320 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16808258 GTTGGCTTAG
16808268 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16808294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16808320 G
1 G
16808321 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16809009 original size:26 final size:26
Alignment explanation
Indices: 16808973--16809025 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16808963 GTTGACTTAG
16808973 GCATACAGAGTTC-ATCCCCAGCCTAA
1 GCATACAGAGTTCAAT-CCCAGCCTAA
*
16808999 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGCCTAA
16809025 G
1 G
16809026 ATCAACTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGCCTAA
Found at i:16809333 original size:26 final size:26
Alignment explanation
Indices: 16809304--16809356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16809294 GTTGACTTAG
16809304 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16809330 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16809356 G
1 G
16809357 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16816103 original size:158 final size:159
Alignment explanation
Indices: 16815717--16816109 Score: 377
Period size: 158 Copynumber: 2.5 Consensus size: 159
16815707 TATGCCCATA
* * * *
16815717 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGTCGAACCGAGGGTTGT
* *
16815782 GGTAGCAGGACCAATAGTACGCAGAGGGGGACCAGGTCAATTCCCGGCTTGCACATTATGCCTCT
66 GGTAGCAGGACCAATAGCACGCAGAGGGGGACCAGGCCAATTCCCGGCTTGCACATTATGCCTCT
* * * *** * *
16815847 TCGATCGGCTCAGTGCCTGTACGCTTATT
131 TCGACCAGCTCAGCGCCCACACACTCATT
* * * * * *
16815876 TCATGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCTCAGTCGA-ACCGAGGGTT
** * * * * *
16815939 ACGGTAGCAGGATCGAA-AGCATGCAG-GGGGGATC-GAGCCGA-TCCTCGGCTTGCACATTCTG
64 GTGGTAGCAGGA-CCAATAGCACGCAGAGGGGGACCAG-GCCAATTCC-CGGCTTGCACATTATG
* * *
16816000 CCTC-TCTGGCCAGTTGAGCGCCCACACACTCATT
126 CCTCTTC-GACCAGCTCAGCGCCCACACACTCATT
* * *
16816034 TCGTGGGTTGGGTTAGGCATACAGAGTTCATTCCATGTCTAAGCCTCGGTCGAACCGAGGGTTGT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGTCGAACCGAGGGTTGT
*
16816099 GGTAGTAGGAC
66 GGTAGCAGGAC
16816110 TGATAGCGGG
Statistics
Matches: 184, Mismatches: 42, Indels: 18
0.75 0.17 0.07
Matches are distributed among these distances:
157 7 0.04
158 105 0.57
159 69 0.38
160 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (159 bp):
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGTCGAACCGAGGGTTGT
GGTAGCAGGACCAATAGCACGCAGAGGGGGACCAGGCCAATTCCCGGCTTGCACATTATGCCTCT
TCGACCAGCTCAGCGCCCACACACTCATT
Found at i:16816258 original size:26 final size:26
Alignment explanation
Indices: 16816221--16816273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16816211 GTTGACATAG
* *
16816221 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
*
16816247 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
16816273 G
1 G
16816274 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:16817816 original size:26 final size:26
Alignment explanation
Indices: 16817785--16817837 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16817775 GTTGACTTAG
16817785 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16817811 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16817837 G
1 G
16817838 ATCAGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16818314 original size:26 final size:26
Alignment explanation
Indices: 16818285--16818337 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16818275 GTTGGCTCAG
16818285 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
16818311 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16818337 G
1 G
16818338 ATTGAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16818509 original size:26 final size:26
Alignment explanation
Indices: 16818480--16818532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16818470 GTTGACTTAG
16818480 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16818506 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16818532 G
1 G
16818533 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16818853 original size:26 final size:26
Alignment explanation
Indices: 16818823--16818875 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16818813 GTTGACTTAG
* *
16818823 GCATACGGAATTCATTCTCAGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
*
16818849 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
16818875 G
1 G
16818876 ATCGCACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAATTCATTCCCAGTCTAA
Found at i:16819023 original size:184 final size:185
Alignment explanation
Indices: 16818664--16819034 Score: 423
Period size: 184 Copynumber: 2.0 Consensus size: 185
16818654 GTTGGCTTAG
* * * * *
16818664 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTATGGCAGCGGGACCGGTA
1 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAAGGTTACGGCAGCAGGACCGGCA
* * * * *
16818729 GCACGCAGAGGGGGATCGAGCTGATCCCTGACTTGCGCATTATGCCTCTCCGGTCAGCTCAACGC
66 GCACGCAGAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCAGTCAGCTCAACGC
* *
16818794 CCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCTCA-GTCTAA
131 CCACACACCCATTTCATGGGTTGACTTAGGCATACGGAATTCATTC-CATGTCTAA
* * * * *
16818849 GCATAAGGAGTTCATTCCCA-GTCTAAGATCGCA-CCGGACCGAAGGTTGCGGCAGCAGGATCGG
1 GCATAAGGAGTTCATT-CCATGTCTAAG-CCCCAGACGGACCGAAGGTTACGGCAGCAGGACCGG
* * * *
16818912 CAGCACGCAG-GGGGGACC-AGGCCGATCCCCGACTTACGCATTCTGCCTCTGCAGT-AGGTTAA
64 CAGCACGCAGAGGGGGACCGA-GCCGATCCCCGACTTACGCATTATGCCTCTCCAGTCAGCTCAA
* * *
16818974 GCGCCCGCACACCCATTTCATGGGTTGACTTAGGCAT-TGGTAGTTCATTCCATGTCTAA
128 -CGCCCACACACCCATTTCATGGGTTGACTTAGGCATACGG-AATTCATTCCATGTCTAA
16819033 GC
1 GC
16819035 CCCAGCCAGA
Statistics
Matches: 156, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
183 10 0.06
184 85 0.54
185 55 0.35
186 6 0.04
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATAAGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAAGGTTACGGCAGCAGGACCGGCA
GCACGCAGAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCAGTCAGCTCAACGC
CCACACACCCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCATGTCTAA
Found at i:16819049 original size:343 final size:343
Alignment explanation
Indices: 16818457--16819192 Score: 980
Period size: 343 Copynumber: 2.1 Consensus size: 343
16818447 GTGCCCGCAT
* * *
16818457 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATAAGGAGTTCATT
* * * *
16818522 CCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGTAACAGGATCGATAGCACGCAGGGTGGATC
66 CCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGACC
* * * * **
16818587 GAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAACGACCGCACACCTGTTTCAT
131 GAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCTGGCTGAACGACCGCACACCCATTTCAT
* *
16818652 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACCGAGGGTTATGGCA
196 GGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTATGGCA
** * * **
16818717 GCGGGACCGGTAGCACGCAGAGGGGGATCGAGCTGATCC-CTGACTTGCGCATTATGCCTCTCCG
261 GCAAGACCGGCAGCACGCAGAGGGGGACCGAGCCAATCCTC-GACTTGCGCATTATGCCTCTCCG
*
16818781 GTCAGCTCAACGCCCACAC
325 GTCAGCTCAACACCCACAC
* *
16818800 GCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCTCAGTCTAAGCATAAGGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATAAGGAGTTCATT
* * * *
16818865 CCCAGTCTAAGATCGCACCGGACCGAA-GGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGAC
66 CCCAGTCTAAGATCGAACCAGACC-AAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGAC
* * *
16818929 C-AGGCCGATCCCCGACTTACGCATTCTGCCTCTGCAG-TAGG-TTAAGCGCCCGCACACCCATT
130 CGA-GCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCT-GGCTGAA-CGACCGCACACCCATT
* * * *
16818991 TCATGGGTTGACTTAGGCATTGGTAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGT
192 TCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTAT
* * *
16819056 GGCAGCAAGACCTGCAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCT
257 GGCAGCAAGACCGGCAGCACGCAGAGGGGGACCGAGCCAATCCTCGACTTGCGCATTATGCCTCT
* * * **
16819121 CCGGTCGGTTCAGCACCCGTAC
322 CCGGTCAGCTCAACACCCACAC
*
16819143 GCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAG
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAA-TTCATTCCCAGTCTAAG
16819193 ATTAGACTGG
Statistics
Matches: 341, Mismatches: 46, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
342 8 0.02
343 330 0.97
344 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (343 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATAAGGAGTTCATT
CCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGACC
GAGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCTGGCTGAACGACCGCACACCCATTTCAT
GGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTATGGCA
GCAAGACCGGCAGCACGCAGAGGGGGACCGAGCCAATCCTCGACTTGCGCATTATGCCTCTCCGG
TCAGCTCAACACCCACAC
Found at i:16819244 original size:159 final size:157
Alignment explanation
Indices: 16818857--16819341 Score: 433
Period size: 159 Copynumber: 3.1 Consensus size: 157
16818847 AAGCATAAGG
* *
16818857 AGTTCATTCCCAGTCTAAGATCGCACCGGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCA-
1 AGTTCATTCCCAGTCTAAGATAG-ACCGGACCGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAG
* * * * * * * * *
16818921 GGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTGCAGTAGGTTAAGCGCCCGCACAC
64 GGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTAAGCACCCGCACGC
* * * ** *
16818986 CCATTTCATGGGTTGACTTAGGCATTGGT
129 TCGTTTCGTGGGTTGACTTAGGCATACGA
** * * * *
16819015 AGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAAGACCTGCAGCACGC
1 AGTTCATTCCCA-GTCTAAG--ATAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GCAGCACGC
* * * * *
16819078 AGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGTTCAGCACCCGTAC
62 AGGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTAAGCACCCGCAC
16819143 GCTCGTTTCGTGGGTTGACTTAGGCATACGA
127 GCTCGTTTCGTGGGTTGACTTAGGCATACGA
* * * * *
16819174 AGTTCATTCCCAGTCTAAGATTAGACTGGACTGAGGGTTACGGCAGTAGGATCGACAGCACGGAG
1 AGTTCATTCCCAGTCTAAGA-TAGACCGGACCGAGGGTTGCGGCAGCAGGATCG-CAGCACGCAG
** * * * ** *
16819239 GGGGGGATTGGACCAGTCCCCAGCTTGCG-ATTTCTGCCTCTCCGG-CTGGCGAATCACCCGCAC
64 GGGGGGACCGGGCCAATCCCCGGCTTGCGCA-TTCTGCCTCTCCGGTC-GGTTAAGCACCCGCAC
* * *
16819302 GCGT-GTTTTGTGGGTTGGCTTAGGCATACGG
127 GC-TCGTTTCGTGGGTTGACTTAGGCATACGA
16819333 AGTTCATTC
1 AGTTCATTC
16819342 TATGTCTAAG
Statistics
Matches: 260, Mismatches: 56, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 53 0.20
159 199 0.77
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATAGACCGGACCGAGGGTTGCGGCAGCAGGATCGCAGCACGCAGGG
GGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTAAGCACCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGA
Found at i:16819361 original size:26 final size:26
Alignment explanation
Indices: 16819325--16819377 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16819315 GTTGGCTTAG
16819325 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16819351 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16819377 G
1 G
16819378 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16819733 original size:26 final size:26
Alignment explanation
Indices: 16819704--16819757 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16819694 GGGTTGACTT
*
16819704 AGCATATGGAGTTCATCCCCAGTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
* *
16819730 AGCATACGGAGTTCATTCCTAGTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
16819756 AG
1 AG
16819758 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATCCCCAGTCTA
Found at i:16820206 original size:158 final size:157
Alignment explanation
Indices: 16819731--16820232 Score: 550
Period size: 158 Copynumber: 3.2 Consensus size: 157
16819721 CCCAGTCTAA
** * *
16819731 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCGGATCGAAGGTTGCGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATCGAC
* ** * * * *
16819795 AGCACGTAGGGGCGACCAAGCTGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGA-CTG
65 AGCACGTAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC-G
* * *
16819859 CCCACACGCTCATTTTATGGGTTGGCTTAG
128 CCCACACGCTCGTTTCATGGGTTGACTTAG
* ** * ** * * *
16819889 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGACAGCGGGA-CTGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATC-GAC
* * * * *
16819953 AGCACGTAGAGGGGGACTGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGTG
65 AGCACGTAG-GGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
**
16820018 CCCGA-ACGCTCGTTTGGTGGGTTGACTTAG
128 CCC-ACACGCTCGTTTCATGGGTTGACTTAG
16820048 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGA-CTGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCGGATC-GAGGGTTGCGACAGCAGGATCGA
* * *
16820111 TAGCACGTAGGGGGGATCGGGCC-AGTCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGC
64 CAGCACGTAGGGGGGA-CGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
*
16820175 GCCCACACGCTCGTTTCATGGGTCGACTTAG
127 GCCCACACGCTCGTTTCATGGGTTGACTTAG
16820206 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16820233 CATACAGAGT
Statistics
Matches: 283, Mismatches: 48, Indels: 26
0.79 0.13 0.07
Matches are distributed among these distances:
157 6 0.02
158 151 0.53
159 121 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
ACACGCTCGTTTCATGGGTTGACTTAG
Found at i:16820236 original size:26 final size:26
Alignment explanation
Indices: 16820206--16820257 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16820196 GTCGACTTAG
*
16820206 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16820232 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16820258 AATTGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16820783 original size:26 final size:26
Alignment explanation
Indices: 16820746--16820798 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16820736 GTTGCCTTAG
*
16820746 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
16820772 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
16820798 G
1 G
16820799 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:16821320 original size:26 final size:26
Alignment explanation
Indices: 16821270--16821320 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16821260 GTTGACTTAG
* * *
16821270 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAATCTAA
*
16821296 GCATACGGAGTTCAGTCCCAATCTA
1 GCATACAGAGTTCAGTCCCAATCTA
16821321 CGATCGAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAATCTAA
Found at i:16823653 original size:158 final size:158
Alignment explanation
Indices: 16823207--16823700 Score: 500
Period size: 158 Copynumber: 3.1 Consensus size: 158
16823197 AACCATATGA
* *
16823207 AGTTCATTCCCAGTCTAAGATCAGATC-GAATCGAGGGTTGC-GGCAGCAGGATCGGCAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAGATCAG-ATCGAGGGTT-CTGGCAGCAGGATCGACAGCACAC
* * * * * * * * **
16823270 AAGGGGGATCG-GCCCGATCATTGGCTTACACATTTTGCCTCTCCGACCGGCTGAGCATCCGCAC
64 AGGGGGGATCGAG-CTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCAC
* * *
16823334 GAC-CGTTTCATGGGATGGCTTAGGCATAGGG
128 G-CTCGTTTCATGGGTTGACTTAGGCATACGG
** * * * **
16823365 AGTTCATT-CCATGTCTAAGCCCCAG-CCAGTTCGAGGGTTGTGGCAGCAGGGCCGACAGCA-AG
1 AGTTCATTCCCA-GTCTAAG-ATCAGATCAGATCGAGGGTTCTGGCAGCAGGATCGACAGCACA-
* * * * *
16823427 TAGAGGGGGATC-AGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGC
63 CAG-GGGGGATCGA-GCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGC
*
16823491 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
126 ACGCTCGTTTCATGGGTTGACTTAGGCATACGG
** ** *
16823524 AGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTCTGGCAATAGGATCGACAACACACAG
1 AGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTCTGGCAGCAGGATCGACAGCACACAG
* * *
16823589 GGGGGATCGAGCTGAGCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGCT
66 GGGGGATCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT
*
16823654 CGTTTCATGGGTTGTCTTAGGCATACGG
131 CGTTTCATGGGTTGACTTAGGCATACGG
**
16823682 AGTTCATTCCTTGTCTAAG
1 AGTTCATTCCCAGTCTAAG
16823701 CATACGGAGT
Statistics
Matches: 271, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 143 0.53
159 120 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTCTGGCAGCAGGATCGACAGCACACAG
GGGGGATCGAGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACGG
Found at i:16823710 original size:26 final size:27
Alignment explanation
Indices: 16823665--16823717 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
16823655 GTTTCATGGG
*
16823665 TTGTCTTAGGCATACGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
16823692 TTGTC-TAAGCATACGGAGTTCATTCC
1 TTGTCTTAAGCATACGGAGTTCATTCC
16823718 CAGTCTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TTGTCTTAAGCATACGGAGTTCATTCC
Found at i:16823723 original size:26 final size:26
Alignment explanation
Indices: 16823674--16823724 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16823664 GTTGTCTTAG
**
16823674 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16823700 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16823725 TGATTTTGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16824432 original size:26 final size:26
Alignment explanation
Indices: 16824395--16824447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16824385 GTTGACTTAG
**
16824395 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16824421 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16824447 G
1 G
16824448 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16825481 original size:343 final size:339
Alignment explanation
Indices: 16824837--16825963 Score: 1128
Period size: 343 Copynumber: 3.2 Consensus size: 339
16824827 ATCGGCTTAG
* * * ** * * * *
16824837 GCATTCTGCCTCTCCGGTCGGTTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACA
1 GCATTATGCCTCTCCGGTCGGCTGAACGTCCACA--CTCATTTCGTGGGTTGACTTAGGCATACG
* ** * * * *
16824902 GAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGTCCGGATCGAGGG
64 GAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGG
* * *
16824966 TTGCGACAGCAGGACAGGCAGCAAGATCGGCAGCATGCAAGGGGGACCGGGCCGATCCCCGGCTT
128 TT-----A-C-GG-CA---A-CAAGATCGGCAGCACGCAGGGGGGATC-GGCCGATCCCCGGCTT
* * * ** * *
16825031 GTGCATTCTACCTCAACGGCCGGCTGAGCGCCCACGCGCTCGTTTCGTGGGTTGGCTTAGGCAAA
180 GTGCATTCTGCCTCTACGGCCGGCTGAGCGCCCGCAAGCCCGTTTCGTGGGTTGGCTTAGGCATA
* *
16825096 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGATCGGTAGCACG
245 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGA-CGGCAGCACG
*
16825161 CAGTGGGGGACCGGGTTGATCCCCGACTTTC
309 CAGTGGGGGACCGGGCTGATCCCCGACTTTC
* * * * * *
16825192 GCATTATGCCTCTCCAGTCGACTGAACGTCCACACGTTCGTTCCATTGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGGTCGGCTGAACGTCCACAC--TCATTTCGTGGGTTGACTTAGGCATACG
* *
16825257 GAGTTCATCCCCTGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGA-CTAAGGG
64 GAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-AAGGG
* ** * * * *
16825321 TTGCGGCAGTAGGATTGGCAGCACGCAGGGGGGATCAGGCCGATACCCGGCATGTGCATTCTGCC
128 TTACGGCAACAAGATCGGCAGCACGCAGGGGGGATC-GGCCGATCCCCGGCTTGTGCATTCTGCC
* * * *
16825386 TCTTCGGTCGGCTGAGTGCCCGCAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGTAGTTCATTC
192 TCTACGGCCGGCTGAGCGCCCGCAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * * * *
16825451 CATGTCTAAGCCACAGCCGGATCGAGGGTTGTGGTAGTGGGACCGACAGCACGTAGTGGGAGACT
257 CATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGA-CGGCAGCACGCAGTGGGGGACC
* *
16825516 GGGCTAATCCCC-AGCTTAC
321 GGGCTGATCCCCGA-CTTTC
* * *
16825535 GCATTATGCCTCTCTGGCCGGCTGAGCGCTCACACACTCATTTCGTGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGGTCGGCTGAACG-TC-CACACTCATTTCGTGGGTTGACTTAGGCATACG
* * ***
16825600 GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGATCAAGGGT
64 GAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGT
* ** * *
16825665 TATGGCAACAAGATCAACATCACGCTGGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCC
129 TACGGCAACAAGATCGGCAGCACGC-AGGGGGGATCG-GCCGATCCCCGGCTTGTGCATTCTGCC
* * * * * *
16825730 TCTCCGGCCGACTGAACGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTT
192 TCTACGGCCGGCTGAGCGCCCGCAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * * *
16825795 CATGTCTAAGCCCCAACCGAACCGAGGGTTATGGCAGCGGGACTGGCAGCACGCAGAGGGGGATC
257 CATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGAC-GGCAGCACGCAGTGGGGGACC
* * *
16825860 GGACCGATCCTCGACTTAT-
321 GGGCTGATCCCCGACTT-TC
* * * * *
16825879 GCATTATGCCTCTTCGGTCGGCTCAACGCCCGCACACTCATTTCGTGGGTTAACTTATGCATACG
1 GCATTATGCCTCTCCGGTCGGCTGAACG-TC-CACACTCATTTCGTGGGTTGACTTAGGCATACG
*
16825944 GAGTTCATTCCCAGTCTAAG
64 GAGTTCATCCCCAGTCTAAG
16825964 ATCAGACCGG
Statistics
Matches: 639, Mismatches: 120, Indels: 37
0.80 0.15 0.05
Matches are distributed among these distances:
342 1 0.00
343 291 0.46
344 229 0.36
345 6 0.01
347 2 0.00
348 2 0.00
349 1 0.00
353 1 0.00
354 1 0.00
355 103 0.16
356 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (339 bp):
GCATTATGCCTCTCCGGTCGGCTGAACGTCCACACTCATTTCGTGGGTTGACTTAGGCATACGGA
GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTA
CGGCAACAAGATCGGCAGCACGCAGGGGGGATCGGCCGATCCCCGGCTTGTGCATTCTGCCTCTA
CGGCCGGCTGAGCGCCCGCAAGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
TCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACGGCAGCACGCAGTGGGGGACCGGGCT
GATCCCCGACTTTC
Found at i:16825629 original size:26 final size:26
Alignment explanation
Indices: 16825593--16825645 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16825583 GTTGACTTAG
16825593 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16825619 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16825645 G
1 G
16825646 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16826059 original size:158 final size:157
Alignment explanation
Indices: 16825619--16826121 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
16825609 CCCAGTCTAA
** ** * * * *
16825619 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATTGGATCAAGGGTTATGGCAACAAGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGA-CCAGGGTTATGGCAGCAGGATCGAC
* * * * * * *
16825683 ATCACGCTGGGGGGGATCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAACG
64 AGCACGCAGAGGGGGATCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGGCT-AACG
* * *
16825748 CCTGCATGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
16825778 GCATAGGGAGTTCATTTCATGTCTAAGCCCCA-ACCGAACCGAGGGTTATGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACC-AGGGTTATGGCAGCAGGATC-GA
* * * * *
16825841 CAGCACGCAGAGGGGGATCGGACCGATCCTCGACTTATGCATTATGCCTCTTCGGTCGGCTCAAC
63 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGGCT-AAC
* * ** *
16825906 GCCCGCACACTCATTTCGTGGGTTAACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
16825937 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAGGGTTATGGCAGCAGGATCGACA
* ** * * *
16826001 GCACGCAGAGGGGGACCGGGCTAATCTTCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGC
65 GCACGCAGAGGGGGATCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGGCTAA-CGC
* *
16826066 CCGTACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16826095 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16826122 TATACGAAGT
Statistics
Matches: 271, Mismatches: 64, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 119 0.44
159 145 0.54
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCAGGGTTATGGCAGCAGGATCGACAG
CACGCAGAGGGGGATCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCCGGCTAACGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16832756 original size:26 final size:26
Alignment explanation
Indices: 16832720--16832772 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16832710 GTTGACTTAG
16832720 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16832746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16832772 G
1 G
16832773 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16833116 original size:159 final size:158
Alignment explanation
Indices: 16832746--16833121 Score: 371
Period size: 159 Copynumber: 2.4 Consensus size: 158
16832736 CCCAGTCTAA
* * * *
16832746 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGAGGGTTACGGTAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTACGGCAGCAGGACCGGC
* * * * * *
16832810 AACACGCAGGGGTGACCAAGCCAATCCCTGGCTTGCGCATTCTACCTCTCCGATCGACTGAGTGC
65 AACACGCAGGGGGGACCAAGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAGCGC
* ** * *
16832875 CCGCATGCCTGTTTCGTGGGTTGGCTTAG
130 CCGCACGCAAGTTTCATGGGTTGACTTAG
* * * ** * ** *
16832904 GCATAGGGAGTTTATT-TCATGTCTAAGCCCCA-ATTGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTACGGCAGCAGGACCGG
* * * * * * *
16832967 CAGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGC
64 CAACACGCAG-GGGGGACCAAGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAGC
* *
16833032 GCCTGCACGTAAGTTTCATGGGTTGACTTAG
128 GCCCGCACGCAAGTTTCATGGGTTGACTTAG
* * *
16833063 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAAGGTTACGGCAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGA
16833122 TTGATAGCAC
Statistics
Matches: 167, Mismatches: 45, Indels: 11
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 54 0.32
159 109 0.65
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGACCGGCA
ACACGCAGGGGGGACCAAGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAGCGCC
CGCACGCAAGTTTCATGGGTTGACTTAG
Found at i:16833206 original size:26 final size:26
Alignment explanation
Indices: 16833170--16833222 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16833160 GTTGGCTTAG
* **
16833170 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16833196 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16833222 G
1 G
16833223 TGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16834256 original size:158 final size:155
Alignment explanation
Indices: 16833875--16834366 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 155
16833865 CTCAGTCTAA
* * * * * *
16833875 GCATACGGAGTTCATTCCCAATGTAAGATCGGACCAGACTGAGGGTTGCAGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGG-TGC-GCAGTAGGATCCACA
* * *
16833940 GCA--CATAGGGGAGACCGGGCCGATCCCTGGTTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
64 GCACGCAGAGGGG-GACC-GGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCG
* * *
16834003 CCCGTACG-TCCATTTCATGGGTTGCCTAG
127 CCCGTACGCT-CGTTTCGTGGGTTGCTTAG
* * ** * * * **
16834032 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTGG-CCGGAGCGAGGGTAGGGGCAG-CGGGGCCG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATTGGACCGGACCGAGGGT--GCGCAGTAGGATCC-
* * * * * *
16834094 ACAGCACGCAGAGGGGGATCGGACCGATCCCTGGCTTGCACATTATGCCTCTCTGGTCGGCTCAG
61 ACAGCACGCAGAGGGGGACCGG-CCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAG
16834159 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
125 CGCCCGTACGCTCGTTTCGTGGGTTG-CTTAG
*
16834191 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAGGGCTGCGCAGTAGGATCCACAG
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGG-TGCGCAGTAGGATCCACAG
* * * * * * *
16834256 CACGCAGGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTTCCTCTCTGACCGGTTGAGCACC
65 CACGCAGAGGGGGACC-GGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCGCC
**
16834321 CACACGCTCGTTTCGTGGGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTT-GCTTAG
*
16834349 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
16834367 ATGTCTAAGC
Statistics
Matches: 266, Mismatches: 53, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
156 7 0.03
157 40 0.15
158 165 0.62
159 50 0.19
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTGCGCAGTAGGATCCACAGC
ACGCAGAGGGGGACCGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGCTTAG
Found at i:16834378 original size:26 final size:26
Alignment explanation
Indices: 16834349--16834401 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16834339 GTTGGCTTAG
* *
16834349 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16834375 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16834401 G
1 G
16834402 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16834744 original size:513 final size:500
Alignment explanation
Indices: 16833776--16834912 Score: 1230
Period size: 513 Copynumber: 2.2 Consensus size: 500
16833766 ACCACCCGTT
* * * * ** *
16833776 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGTTTGAGCACCTGCACGCTCGTTTTGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
* * * *
16833841 TGACTTAGGCATACGGAGTTCATCCTCA-GTCTAAGCATACGGAGTTCATTCCCAATGTAAGATC
66 TGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
16833905 GGACCAGACTGAGGGTTGCAGCAGTAGGATCGATAGCACATAGGGGAGACCGGGCCGATCCCTGG
130 GGACCAGACTAAGGGTTGCAGCAGTAGGATCAATAGCACACAGGGGAGACCGAGCCGATCCCTGG
* * * *
16833970 TTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGTCCATTTCATGGGTTGCCTAGGCA
195 CTTACGCATTCTGCCTCTCAGATCGGCTGAGCACCCGTACGCCCATTTCATGGGTTGCCTAGGCA
* ** * * *
16834035 TAGGGAGTTCATTCCATGTCTAAGCCCTGGCCGGAGCGAGGGTAGGGGCAGCGGGGCCGACAGCA
260 TAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGCAGCGGGACCGACAGCA
* * * * *
16834100 CGCAGAGGGGGATCGGACCGATCCCTGGCTTGCACATTATGCCTCTCTGGTCGGCTCAGCGCCCG
325 CGCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCTGGCCGGCTCAGCACCCG
* * * * ** *
16834165 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGAC
390 TACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAATCTAAGATCAGACCGGAC
* *
16834230 CGAGGGCTGC-GCAGTAGGATCCACAGCACGCAGGGGGGGACCAGGC
455 CGAGGGCTGCAGCAGCAGGATCAACAGCACGCA-GGGGGGACCAGGC
* * *
16834276 CGATCCCCGACTTACGCATTCTTCCTCTCTGACCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
* *
16834341 TGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
16834406 GATCGGA-TCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCAATAGCACGCAGGAGG-GATCG
131 GACCAGACT-AAGGGTT------GCA-G--CAGT---AGGATCAATAGCACACAGG-GGAGACCG
* * * *
16834469 AGCTGAT-CCTCGGCTTATGCATTCTGCCTCTCTAG-TCGGCTGAGCACCCGTACGCCCGTTTCG
182 AGCCGATCCCT-GGCTTACGCATTCTGCCTCTC-AGATCGGCTGAGCACCCGTACGCCCATTTCA
* * *
16834532 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATTGTGGC
245 TGGGTT-GCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGC
* * * * * * * * *
16834597 AGTGGGATCGGCAGCATGTAGAGGGAGATTGGGCCAATCCTTCGCTTGCGCATTATGCCTC-CTC
309 AGCGGGACCGACAGCACGCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCT-
* * *
16834661 GGCCGGCTCAGCACCCGTACACTCGTTTCGTAGGTTGACTTATACATACGAAGTTCATTCTCAGT
373 GGCCGGCTCAGCACCCGTACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAAT
* ** * * * ***
16834726 CTAAGATCAGACCGGACCGAGGGTTGCATTAGCAGGATCAATAGCACGTAGTGGGGATTGGGC
438 CTAAGATCAGACCGGACCGAGGGCTGCAGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGC
* ** * ** * *
16834789 CGAT-CCCTAGCTTGCGCATTCTGCCTCT-TCGGCTAGCTGAGTGCCCATACGCTCGTTTCATGG
1 CGATCCCCGA-CTTGCGCATTCTGCCTCTCT-GGCCGGTTGAGCACCCACACGCTCGTTTCGTGG
** *
16834852 GTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCCCAGTCTA
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
16834913 CGATTTTGAG
Statistics
Matches: 523, Mismatches: 92, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
499 3 0.01
500 122 0.23
506 3 0.01
507 1 0.00
509 4 0.01
511 3 0.01
512 81 0.15
513 290 0.55
514 16 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (500 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACTAAGGGTTGCAGCAGTAGGATCAATAGCACACAGGGGAGACCGAGCCGATCCCTGGC
TTACGCATTCTGCCTCTCAGATCGGCTGAGCACCCGTACGCCCATTTCATGGGTTGCCTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGCAGCGGGACCGACAGCAC
GCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCTGGCCGGCTCAGCACCCGT
ACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACC
GAGGGCTGCAGCAGCAGGATCAACAGCACGCAGGGGGGACCAGGC
Found at i:16835593 original size:26 final size:26
Alignment explanation
Indices: 16835557--16835609 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835547 GTTGACTTAG
16835557 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16835583 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16835609 G
1 G
16835610 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16836043 original size:26 final size:26
Alignment explanation
Indices: 16836007--16836059 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835997 GTTGGCTTAG
* **
16836007 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16836033 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16836059 G
1 G
16836060 TGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16837093 original size:158 final size:155
Alignment explanation
Indices: 16836712--16837203 Score: 456
Period size: 158 Copynumber: 3.1 Consensus size: 155
16836702 CTCAGTCTAA
* * * * * *
16836712 GCATACGGAGTTCATTCCCAATGTAAGATCGGACCAGACTGAGGGTTGCAGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGG-TG-AGCAGTAGGATCCACA
* * *
16836777 GCA--CATAGGGGAGACCGGGCCGATCCCTGGTTTACGCATTCTGCCTCTCCGATCGGCTGAGCG
64 GCACGCAGAGGGG-GACC-GGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCG
* * *
16836840 CCCGTACG-TCCATTTCATGGGTTGCCTAG
127 CCCGTACGCT-CGTTTCGTGGGTTGCTTAG
* * ** * * * **
16836869 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTGG-CCGGAGCGAGGGTAGGGGCAG-CGGGGCCG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATTGGACCGGACCGAGGGT--GAGCAGTAGGATCC-
* * * * * *
16836931 ACAGCACGCAGAGGGGGATCGGACCGATCCCTGGCTTGCACATTATGCCTCTCTGGTCGGCTCAG
61 ACAGCACGCAGAGGGGGACCGG-CCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAG
16836996 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
125 CGCCCGTACGCTCGTTTCGTGGGTTG-CTTAG
* *
16837028 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACCGAGGGCTGTGCAGTAGGATCCACAG
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGG-TGAGCAGTAGGATCCACAG
* * * * * * *
16837093 CACGCAGGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTTCCTCTCTGACCGGTTGAGCACC
65 CACGCAGAGGGGGACC-GGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCGCC
**
16837158 CACACGCTCGTTTCGTGGGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTT-GCTTAG
*
16837186 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
16837204 ATGTCTAAGC
Statistics
Matches: 266, Mismatches: 53, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
156 7 0.03
157 40 0.15
158 165 0.62
159 50 0.19
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGGGTGAGCAGTAGGATCCACAGC
ACGCAGAGGGGGACCGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGCTTAG
Found at i:16837215 original size:26 final size:26
Alignment explanation
Indices: 16837186--16837238 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16837176 GTTGGCTTAG
* *
16837186 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16837212 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16837238 G
1 G
16837239 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16837581 original size:513 final size:498
Alignment explanation
Indices: 16836613--16837749 Score: 1221
Period size: 513 Copynumber: 2.2 Consensus size: 498
16836603 ACCACCCGTT
* * * * ** *
16836613 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGTTTGAGCACCTGCACGCTCGTTTTGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
* * * *
16836678 TGACTTAGGCATACGGAGTTCATCCTCA-GTCTAAGCATACGGAGTTCATTCCCAATGTAAGATC
66 TGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
16836742 GGACCAGACTGAGGGTTGCAGCAGTAGGATCGATAGCACATAGGGGAGACCGGGCCGATCCCTGG
130 GGACCAGACTAAGGGTTGCAGCAGTAGGATCAATAGCACACAGGGGAGACCGAGCCGATCCCTGG
* * * *
16836807 TTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTACGTCCATTTCATGGGTTGCCTAGGCA
195 CTTACGCATTCTGCCTCTCAGATCGGCTGAGCACCCGTACGCCCATTTCATGGGTTGCCTAGGCA
* ** * * *
16836872 TAGGGAGTTCATTCCATGTCTAAGCCCTGGCCGGAGCGAGGGTAGGGGCAGCGGGGCCGACAGCA
260 TAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGCAGCGGGACCGACAGCA
* * * * *
16836937 CGCAGAGGGGGATCGGACCGATCCCTGGCTTGCACATTATGCCTCTCTGGTCGGCTCAGCGCCCG
325 CGCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCTGGCCGGCTCAGCACCCG
* * * * ** *
16837002 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGAC
390 TACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAATCTAAGATCAGACCGGAC
* *
16837067 CGAGGGCTGTGC-AGTAGGATCCACAGCACGCAGGGGGGGACCAGGC
455 CGAGGG-T-TGCTAGCAGGATCAACAGCACGCA-GGGGGGACCAGGC
* * *
16837113 CGATCCCCGACTTACGCATTCTTCCTCTCTGACCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
* *
16837178 TGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * *
16837243 GATCGGA-TCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCAATAGCACGCAGGAGG-GATCG
131 GACCAGACT-AAGGGTT------GCA-G--CAGT---AGGATCAATAGCACACAGG-GGAGACCG
* * * *
16837306 AGCTGAT-CCTCGGCTTATGCATTCTGCCTCTCTAG-TCGGCTGAGCACCCGTACGCCCGTTTCG
182 AGCCGATCCCT-GGCTTACGCATTCTGCCTCTC-AGATCGGCTGAGCACCCGTACGCCCATTTCA
* * *
16837369 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATTGTGGC
245 TGGGTT-GCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGC
* * * * * * * * *
16837434 AGTGGGATCGGCAGCATGTAGAGGGAGATTGGGCCAATCCTTCGCTTGCGCATTATGCCTC-CTC
309 AGCGGGACCGACAGCACGCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCT-
* * *
16837498 GGCCGGCTCAGCACCCGTACACTCGTTTCGTAGGTTGACTTATACATACGAAGTTCATTCTCAGT
373 GGCCGGCTCAGCACCCGTACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAAT
* * * ***
16837563 CTAAGATCAGACCGGACCGAGGGTTGCATTAGCAGGATCAATAGCACGTAGTGGGGATTGGGC
438 CTAAGATCAGACCGGACCGAGGGTTGC--TAGCAGGATCAACAGCACGCAGGGGGGACCAGGC
* ** * ** * *
16837626 CGAT-CCCTAGCTTGCGCATTCTGCCTCT-TCGGCTAGCTGAGTGCCCATACGCTCGTTTCATGG
1 CGATCCCCGA-CTTGCGCATTCTGCCTCTCT-GGCCGGTTGAGCACCCACACGCTCGTTTCGTGG
** *
16837689 GTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCCCAGTCTA
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
16837750 CGATTTTGAG
Statistics
Matches: 524, Mismatches: 89, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
499 3 0.01
500 122 0.23
506 3 0.01
507 1 0.00
509 4 0.01
511 6 0.01
512 82 0.16
513 287 0.55
514 16 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (498 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACTAAGGGTTGCAGCAGTAGGATCAATAGCACACAGGGGAGACCGAGCCGATCCCTGGC
TTACGCATTCTGCCTCTCAGATCGGCTGAGCACCCGTACGCCCATTTCATGGGTTGCCTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGATAGGGGCAGCGGGACCGACAGCAC
GCAGAGGGAGATCGGACCAATCCCTCGCTTGCACATTATGCCTCTCTGGCCGGCTCAGCACCCGT
ACACTCGTTTCGTAGGTTGACTTAGACATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACC
GAGGGTTGCTAGCAGGATCAACAGCACGCAGGGGGGACCAGGC
Found at i:16838423 original size:26 final size:26
Alignment explanation
Indices: 16838387--16838439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16838377 GTTGACTTAG
16838387 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
16838413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16838439 G
1 G
16838440 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16838745 original size:159 final size:159
Alignment explanation
Indices: 16838448--16838832 Score: 407
Period size: 159 Copynumber: 2.4 Consensus size: 159
16838438 AGATCGAACC
* * ** * * * *
16838448 AGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGAGGAGGACCGGGCTGATCCCTGGCTTG
1 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGC-GATCCCCGGCTTA
* * *** * * * **
16838513 CGCATTCTACCTTTTTTGGTCGGCTGAGTGTCCGTACGCCCATTTCCTGGGTTGGCTTAGACATA
65 CACATTCTACCTTCTCCAGTCGGCTGAGTGCCCGCACGCCCATTTCATACGTTGGCTTAGACATA
* * *
16838578 GGGAGTTCATTCCATGTCTACGCCCCA-AT
130 GAGAGTTCATTCCATGTCTAAGCCCCAGCT
*
16838607 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTT
1 -AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGG-CGATCCCCGGCTT
* * *
16838672 ACACATTCTGCC-TCTCCAGTCGGTTGAGTGCCCGCACGCCCATTTCATACGTTGGCTTAGGCAT
64 ACACATTCTACCTTCTCCAGTCGGCTGAGTGCCCGCACGCCCATTTCATACGTTGGCTTAGACAT
*
16838736 CGAGAGTTCATTCCATGTCTAAGCCCCAGCT
129 AGAGAGTTCATTCCATGTCTAAGCCCCAGCT
* * * * * * *
16838767 AGACCAAGGGTTGTGGTAGTGGGACC-AGCAACACGTAGAGGGGGATCCGGCCGATCCCCGGCTT
1 AGACCGAGGGTTGTGGCAGCGGGACCGA-CAGCACGCAGAGGGGGA-CTGGGCGATCCCCGGCTT
16838831 AC
64 AC
16838833 GTATTTTGCC
Statistics
Matches: 187, Mismatches: 34, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
158 1 0.01
159 118 0.63
160 67 0.36
161 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGCGATCCCCGGCTTAC
ACATTCTACCTTCTCCAGTCGGCTGAGTGCCCGCACGCCCATTTCATACGTTGGCTTAGACATAG
AGAGTTCATTCCATGTCTAAGCCCCAGCT
Found at i:16838864 original size:159 final size:159
Alignment explanation
Indices: 16838548--16838917 Score: 381
Period size: 159 Copynumber: 2.3 Consensus size: 159
16838538 GAGTGTCCGT
* * * * * *
16838548 ACGCCCATTTCCTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTACGCCCCAATCGGACC
1 ACGCCCATTTCATGGGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCCAATCAGACC
* * * *
16838613 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTACACAT
66 AAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACTCGGCCGATCCCCGGCTTACACAT
* ** **
16838678 TCTGCCTCTCCAGTCGGTTGAGTGCCCGC
131 TCTGCCTCTCCAGCCGACTGAACGCCCGC
** *
16838707 ACGCCCATTTCATACGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCC-AGCTAGAC
1 ACGCCCATTTCATGGGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCCAATC-AGAC
* * * *
16838771 CAAGGGTTGTGGTAGTGGGACC-AGCAACACGTAGAGGGGGA-TCCGGCCGATCCCCGGCTTACG
65 CAAGGGTTGTGGCAGCGGGACCGA-CAACACGCAGAGGGGGACT-CGGCCGATCCCCGGCTTACA
* * * * *
16838834 TATTTTGCCTTTCCGGCCTACTGAACGCCCGC
128 CATTCTGCCTCTCCAGCCGACTGAACGCCCGC
*** *
16838866 ACGCTTGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCC-TAGTCTAAG
1 ACGCCCATTTCATGGGTTGGCTTAGGCAT-CGAGAGTTCATTCCAT-GTCTAAG
16838918 AGTTTGAGCC
Statistics
Matches: 173, Mismatches: 33, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
158 5 0.03
159 167 0.97
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
ACGCCCATTTCATGGGTTGGCTTAGGCATCGAGAGTTCATTCCATGTCTAAGCCCCAATCAGACC
AAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACTCGGCCGATCCCCGGCTTACACAT
TCTGCCTCTCCAGCCGACTGAACGCCCGC
Found at i:16839640 original size:26 final size:26
Alignment explanation
Indices: 16839589--16839641 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16839579 GTTAACTTAG
*
16839589 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGCCTAA
*
16839615 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGAAGTTCA-TCCCTAGCCTAA
16839641 G
1 G
16839642 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGCCTAA
Found at i:16839910 original size:159 final size:159
Alignment explanation
Indices: 16839655--16840276 Score: 623
Period size: 159 Copynumber: 3.9 Consensus size: 159
16839645 GAACCAAATC
* * * * ** ** *
16839655 GAGGGTTGCGACAACAGGATTGGCAGCACGTAG-AGGGGATTGGGTCGATCC-CTGGCTTGCGCA
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAAGGGGATCAGGCCGATCCTC-GGCTTGCGCA
* * * * *
16839718 TTCTGCCTCTCCGATCGGTTGAGCACCCATACGCCCGTTTCATGGGTTGGGTTAGGCATAGGGAA
65 TTCTGCCTCTCCGACCGGCTGAGCACCCATACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAG
*
16839783 TTCATTCCATGTCTAAGCCCCAGCCGGACT
130 TTCATTCCATGTCTAAGCCCCAGACGGACT
* *
16839813 GAGGGTTGTGGCAGCGGGA-CTGGCAGCACACAGAAGGGGATC-GTGTCGATCCTCGGCTTGCGC
1 GAGGGTTGTGGCAGCAGGATC-GGCAGCACACAGAAGGGGATCAG-GCCGATCCTCGGCTTGCGC
* ** * * * * * * *
16839876 ATTATGCCTCTCCGGTCGGCTCAGCGCCCGTACGCTCATTTCCTGGGTTGACTTAGGCATACGGA
64 ATTCTGCCTCTCCGACCGGCTGAGCACCCATACGCCCGTTTCATGGGTTGGCTTAGGCATACGGA
* * **** *
16839941 GTTCATT-CTTAGTGTAAGATTGA-ATCGGACC
129 GTTCATTCCAT-GTCTAAGCCCCAGA-CGGACT
** * * * *
16839972 GAGGGTTACGGTAGCAGGATCAGCAGCACACA-AGGGGGATCAGGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAAGGGGATCAGGCCGATCCTCGGCTTGCGCAT
* * ** *
16840036 TCTGCCTCTCCGACCAGCTGAGCACCCACACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCGACCGGCTGAGCACCCATACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
16840101 TCATTCCATGTCTAAGCCCCAGACAGATT
131 TCATTCCATGTCTAAGCCCCAGACGGACT
* * * * *
16840130 GAGGGTTGTGGCAG-TGGTTTCGGCAGCACACAGAGGGGGAACAGGCCGATCTTCGGCTTGCGCA
1 GAGGGTTGTGGCAGCAGG-ATCGGCAGCACACAGAAGGGGATCAGGCCGATCCTCGGCTTGCGCA
* * *
16840194 TTCTGCCTCTCCGACCGGTTGAGCGCCCGA-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
65 TTCTGCCTCTCCGACCGGCTGAGCACCC-ATACGCCCGTTTCATGGGTTGGCTTAGGCATACGGA
16840258 GTTCATTCCATGTCTAAGC
129 GTTCATTCCATGTCTAAGC
16840277 ATACGGAGTT
Statistics
Matches: 375, Mismatches: 76, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 144 0.38
159 226 0.60
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAAGGGGATCAGGCCGATCCTCGGCTTGCGCAT
TCTGCCTCTCCGACCGGCTGAGCACCCATACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGACGGACT
Found at i:16840279 original size:26 final size:26
Alignment explanation
Indices: 16840249--16840301 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16840239 GTTGGCTTAG
16840249 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16840275 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16840301 G
1 G
16840302 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16841008 original size:26 final size:26
Alignment explanation
Indices: 16840972--16841022 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16840962 TGACTTAGGT
16840972 ATACGGAGTTCA-TCCCGAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
16840998 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16841023 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16841304 original size:159 final size:157
Alignment explanation
Indices: 16840996--16841511 Score: 380
Period size: 159 Copynumber: 3.2 Consensus size: 157
16840986 CCGAGTCTAA
* * *
16840996 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCGGATCGGACCAAGGGTTACGACAGCAGGACCGACA
* * * * * * *
16841061 GCACGTAAGGGGGACGGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCCGAGCACC
65 ACACGTAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCCGAGCACC
**
16841126 CGCATGCCTGTTTCATGGGTTGGCTTAG
130 CGCATGCCTGTTTCATGGGTTAACTTAG
* * ** * * *
16841154 GCATAGGGAGTTCATTCCATGTCTAAGCCCCGG-TCGGACCAAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ACCGGATCGGACCAAGGGTTACGACAGCAGGACCGAC
* *
16841218 AACACGTAGAGGGGGACCGAGCCGATCCTCGACTTACGCATTATGCCTCTCCGGTCGGCTC-AGC
64 AACACGTA-AGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGC-CGAGC
* ** *
16841282 GCCCGCATG-CTCGTTTTGTGGGTTAACTTGG
127 ACCCGCATGCCT-GTTTCATGGGTTAACTTAG
* * * * * * ** * * *
16841313 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGAGTTACGGTAGCAAGATCGACG
1 GCATACGGAGTTCATT-CCAGTCTAAGACCGGATCGGACCAAGGGTTACGACAGCAGGACCGACA
* * * * * * * * **
16841378 ACACGT-TGGAGGGCACCGGGTCGGTCCCC-AGCTTACACATTCTGGCTCTACGATCGGTTGAGC
65 ACACGTAAGG-GGG-ACCGAGCCGATCCCCGA-CTTACGCATTATGCCTCTCCGATCGGCCGAGC
* * **
16841441 GCCCG--TACACTCGTTTCATGGGTTGGCTTAG
127 ACCCGCATGC-CT-GTTTCATGGGTTAACTTAG
* * * *
16841472 GAATACAGAGTTCATTCCCAGTATAAGATCGGATCGGACC
1 GCATACGGAGTTCATT-CCAGTCTAAGACCGGATCGGACC
16841512 GAGGTTCACA
Statistics
Matches: 280, Mismatches: 65, Indels: 25
0.76 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 62 0.22
159 208 0.74
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCGGATCGGACCAAGGGTTACGACAGCAGGACCGACAA
CACGTAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCCGAGCACCC
GCATGCCTGTTTCATGGGTTAACTTAG
Found at i:16842207 original size:158 final size:158
Alignment explanation
Indices: 16841815--16842325 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 158
16841805 TCGTTTTACA
* * *
16841815 GGTTGACTTAAGCATACGGAGTTCATTTCCA-GTCTAAGATCGGACCAGATTGAGGGTTGCGACA
1 GGTTGACTTAAGCATACGGAGTTCA-TTCCATGTCTAAGATCAGA-CAGATTGAGGGTTGTGGCA
** * * * * **
16841879 GTAGGATTGGTAGCATGC--AGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTAG
64 GTAGGATTGACAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGG
* * *
16841942 TCGGCTGAGCGCCCGCACGCCCATTTCATG
129 TCGGCTGAACACCCGCACGCTCATTTCATG
* * * ** * *
16841972 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATTAAGGGTTGTGGCAG
1 GGTTGACTTAAGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGATTGAGGGTTGTGGCAG
* ** * * *
16842037 TGGGACCGACAGCATGCAGAGGGGGACCGGGCTGAT-CTCAGCTTGCTCATTATGCCTCTCCGGT
65 TAGGATTGACAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGT
* * *
16842101 CGGCTCAACACCCGTACGCTCATTTCGTG
130 CGGCTGAACACCCGCACGCTCATTTCATG
* * * *
16842130 GGTTGACTTAAGCATACAGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCGAGGGTTATGGCA
1 GGTTGACTTAAGCATACGGAGTTCATT-CCATGTCTAAGATCAGAC-AGATTGAGGGTTGTGGCA
* * * * * *
16842194 GCAGGATTGACAGCACGCAG-GGGGGATCGGGTTGGTCCCCTA-CTTGCGCATTCTGCCTCTTCG
64 GTAGGATTGACAGCATGCAGAGGGGGACCGGGCTGATCCCC-AGCTTGCGCATTCTGCCTCTCCG
* * *
16842257 G-CTGGTTGAACACCTGCACGCTCGTTTCATG
128 GTC-GGCTGAACACCCGCACGCTCATTTCATG
* * *
16842288 GGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAG
1 GGTTGACTTAAGCATACGGAGTTCATTCCATGTCTAAG
16842326 CATATGGAGT
Statistics
Matches: 281, Mismatches: 63, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
156 5 0.02
157 79 0.28
158 178 0.63
159 19 0.07
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GGTTGACTTAAGCATACGGAGTTCATTCCATGTCTAAGATCAGACAGATTGAGGGTTGTGGCAGT
AGGATTGACAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC
GGCTGAACACCCGCACGCTCATTTCATG
Found at i:16842549 original size:26 final size:26
Alignment explanation
Indices: 16842512--16842564 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16842502 GTTGACTTAT
16842512 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16842538 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16842564 G
1 G
16842565 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16843013 original size:158 final size:158
Alignment explanation
Indices: 16842538--16843038 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
16842528 CCTAGTCTAA
* * * **
16842538 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTT-TCGACAGTTGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCAAGGGTTGT-GGCAGCAGGATCGA
* * ** * * * * * * *
16842601 TAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTACCTCTTC-GACTGAC-GGAG
64 CAGCATGCAAAGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCAG-CTAG-G
* * *
16842664 CGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
127 CACCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
16842696 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTAAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
16842760 CGCATGCAAAGGGGGACCAGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCAGCTCA-AC
65 AGCATGCAAA-GGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCAGCT-AGGC
* * **
16842824 CCCCGAATGCTCGTTTCGTGGGTTGATTTAG
128 ACCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* *
16842855 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAAGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGAC
* *
16842919 AGCATGCATAGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTTCGGCCAGCTAGGCAC
65 AGCATGCAAAGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCAGCTAGGCAC
*
16842984 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
16843013 GCATACGGAGTTAATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16843039 CCATATGGAG
Statistics
Matches: 275, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 143 0.52
159 119 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGACA
GCATGCAAAGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCAGCTAGGCACC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16843050 original size:26 final size:26
Alignment explanation
Indices: 16843014--16843064 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16843004 TTGGCTTAGG
16843014 CATACGGAGTTAATT-CCATGTCTAAC
1 CATACGGAGTTAATTCCCA-GTCTAAC
* *
16843040 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTAATTCCCAGTCTAA
16843065 GATCGGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTAATTCCCAGTCTAAC
Found at i:16843476 original size:697 final size:702
Alignment explanation
Indices: 16841823--16843578 Score: 2001
Period size: 697 Copynumber: 2.5 Consensus size: 702
16841813 CAGGTTGACT
* * * *
16841823 TAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGTAGGAT-T
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATC-AACCAGACTGAGGGTTGCGACAGTAGGATCT
* * * *
16841887 GGTAGCATGCA-GGGGGA-CAGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTAGTCGGCTGA
65 -GTAGCACGCAGGGGGGACCA-GGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGTC-GATGG
* *
16841950 GCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
127 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * *
16842015 GTCAGATTAAGGGTTGTGGCAGTGGGACCGACAGCATGCAGAGGGGGACCGGGCTGAT-CTCAGC
192 GTCAGACTAAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACCAGGCCGATCCCCGGC
* * * *
16842079 TTGCTCATTATGCCTCTCCGGTCGGCTCAACACCCGTACGCTCATTTCGTGGGTTGACTTAAGCA
257 TTGCACATTATGCCTCTCCGGCCAGCTCAACACCCGAACGCTCATTTCGTGGGTTGACTTAAGCA
* * * * *
16842144 TACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTATGGCAGCAGGATTGACAGCA
322 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTATGGCAGCAGGATCGACAGCA
* * * * * * * * *
16842209 CGCAGGGGGGATCGGGTTGGTCCCCTACTTGCGCATTCTGCCTCTTCGGCTGGTTGAACACCTGC
387 CGCAGAGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTACCTCTTCGGCAGCTAGAACACCCGC
*
16842274 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGCATATGGAGTTCA
452 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAACCATATGGAGTTCA
* * * ** * *
16842339 TTCCCAGCATACGGAGCCCCAATCGGACCGAGTGTTGTGGCAGCAGGATCGACAGCAAAATCGGC
517 TTCCCAGCATA--GAGACCCAATCGAACCGAGGGTTACGACAGCAGGATC-ACAGCAAAATCGAC
* * * * * *
16842404 AGCATGTAGTAAGGGACCGAGCTGATCCTCGGCTTGTGCATTATACCTCTTCGGCCGACCTCTCC
579 AGCACGTAGTAAGGGACCGAACCGATCCTCAGCTTGCGCATTATACCTCTACGGCCGA-CTCT-C
* ** * *
16842469 GACTGACTGAGCACCCGTATGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATCCCTAGT
642 -AC--AC-GAG-ACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
16842534 C
702 C
* * *
16842535 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTCGACAGTTGGATC-
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCA-ACCAGACTGAGGGTTGCGACAGTAGGATCT
* * * * *
16842599 GATAGCACGCAGGGGGGACC-GAGCCGATCCCTGGCTTGTGCATTCTACCTCTTC-GACTGACGG
65 G-TAGCACGCAGGGGGGACCAG-GCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGTC-GATGG
*
16842662 AGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
127 -GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * *
16842727 AGCCAGACTAAGGGTTGTGGCAGCGGGACCGACCGCATGCAAAGGGGGACCAGGTCGATCCCCGG
191 AGTCAGACTAAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACCAGGCCGATCCCCGG
* * * * *
16842792 CTTGCACATTATGCCTCTCCGGCCAGCTCAACCCCCGAATGCTCGTTTCGTGGGTTGATTTAGGC
256 CTTGCACATTATGCCTCTCCGGCCAGCTCAACACCCGAACGCTCATTTCGTGGGTTGACTTAAGC
* *
16842857 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGTGGCAGCAGGATCGACAGC
321 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTATGGCAGCAGGATCGACAGC
* * * *
16842922 ATGCATAGGGGACCGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTTCGGCCAGCTAG-GCACCC
386 ACGCAGAGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTACCTCTTCGG-CAGCTAGAACACCC
*
16842986 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAACCATATGGAGTT
450 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAACCATATGGAGTT
* ** *
16843051 CATTCCCAGTC-TA-AGATCGGATCGAACCGAGGGTTACGATAGCAGGA-C-CAGCAACAGGATC
515 CATTCCCAG-CATAGAGACCCAATCGAACCGAGGGTTACGACAGCAGGATCACAGCAA-A--ATC
* ** * * *
16843112 GATAGCACGTAG-GGGGGACCGAACCGATCCTCAGCTTGCGCATTCTGCCTCTACGGCCG-GT-T
576 GACAGCACGTAGTAAGGGACCGAACCGATCCTCAGCTTGCGCATTATACCTCTACGGCCGACTCT
** *
16843174 -A-A-GAG-CCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
641 CACACGAGACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
* * ** * *
16843232 TAAGCATACAAAGTTCATTCCCAGTCTAAGATCTAATCAGACTGAGGGTTGCGGTAGAAAGATCT
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATC-AACCAGACTGAGGGTTGCGACAGTAGGATCT
* * *
16843297 GCAGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGATTGGGC
65 GTAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGTCGA-TGGGC
* *
16843362 GCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGT
129 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * * * *
16843427 CGGACTGAGGGTTGTGGTAGCGGGATCGACAACATGCAAAGGTGGACCAGGCCAATCCCCGACTT
194 CAGACTAAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACCAGGCCGATCCCCGGCTT
** * * * * * * * *
16843492 GTGCATTTTGCCTCTCCGACC-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGC-TGAGCCA
259 GCACATTATGCCTCTCCGGCCAG-CTCAACACCCGAACGCTCATTTCGTGGGTTGACTTAAG-CA
16843555 TA-AGGAGTTCATT-CCATGTCTAAG
322 TACA-GAGTTCATTCCCA-GTCTAAG
16843579 CATATGGAGT
Statistics
Matches: 884, Mismatches: 138, Indels: 59
0.82 0.13 0.05
Matches are distributed among these distances:
696 6 0.01
697 324 0.37
698 7 0.01
699 3 0.00
701 1 0.00
704 1 0.00
707 1 0.00
708 7 0.01
709 1 0.00
710 39 0.04
711 37 0.04
712 68 0.08
713 146 0.17
714 238 0.27
715 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (702 bp):
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAACCAGACTGAGGGTTGCGACAGTAGGATCTG
TAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGTCGATGGGCGC
CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
GACTAAGGGTTGTGGCAGCGGGACCGACAGCATGCAAAGGGGGACCAGGCCGATCCCCGGCTTGC
ACATTATGCCTCTCCGGCCAGCTCAACACCCGAACGCTCATTTCGTGGGTTGACTTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTATGGCAGCAGGATCGACAGCACGCA
GAGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTACCTCTTCGGCAGCTAGAACACCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAACCATATGGAGTTCATTCC
CAGCATAGAGACCCAATCGAACCGAGGGTTACGACAGCAGGATCACAGCAAAATCGACAGCACGT
AGTAAGGGACCGAACCGATCCTCAGCTTGCGCATTATACCTCTACGGCCGACTCTCACACGAGAC
CCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
Found at i:16843602 original size:26 final size:26
Alignment explanation
Indices: 16843553--16843603 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16843543 TTGGCTGAGC
*
16843553 CATAAGGAGTTCATTCCATGTCTAAG
1 CATAAGGAGTTCATTCCATATCTAAG
*
16843579 CATATGGAGTTCATTCCCA-ATCTAA
1 CATAAGGAGTTCATT-CCATATCTAA
16843604 TAGTGTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCATATCTAAG
Found at i:16844653 original size:159 final size:157
Alignment explanation
Indices: 16844252--16844655 Score: 391
Period size: 159 Copynumber: 2.5 Consensus size: 157
16844242 GTGACTGCAT
* *
16844252 GCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCGGACCGA
* * * * * ** * *
16844317 GGGTTGCGACAGTAGGATCGACTGCATGCGAGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCT
65 GGGTTGCGGCAGTAGGATCGACTGCACGAGAGGGGGACCAGGTCAATCCCCGGCTTGTACATTAT
** * * ***
16844382 GCCTCTCCGGTCGGCTGAGCGCCCGCTT
130 GCCTCTCCAATCGACTCAGCGCCCGAAC
* ** * ** * **
16844410 GCCCATTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG--ATAGACCGGACC
** * *
16844473 GAGGGTTTTGGCAGTGGGATCG-GTAGCACGTAGAGGGGGACCAGGTCAATCCCCGGCTTGTACA
63 GAGGGTTGCGGCAGTAGGATCGACT-GCACG-AGAGGGGGACCAGGTCAATCCCCGGCTTGTACA
*
16844537 TTATGCCTCTCCAATTGACTCAGCGCCCGAAC
126 TTATGCCTCTCCAATCGACTCAGCGCCCGAAC
* *
16844569 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATA-GACCGGACCGA
* * *
16844634 GAGTTGCGGCAATAAGATCGAC
65 GGGTTGCGGCAGTAGGATCGAC
16844656 AGCATGCAGG
Statistics
Matches: 187, Mismatches: 50, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
157 5 0.03
158 67 0.36
159 112 0.60
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGACCGGACCGAG
GGTTGCGGCAGTAGGATCGACTGCACGAGAGGGGGACCAGGTCAATCCCCGGCTTGTACATTATG
CCTCTCCAATCGACTCAGCGCCCGAAC
Found at i:16844789 original size:26 final size:26
Alignment explanation
Indices: 16844749--16844801 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16844739 GTTAGCTTAG
16844749 GCATACGAAGCTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
* *
16844775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
16844801 G
1 G
16844802 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:16845490 original size:26 final size:26
Alignment explanation
Indices: 16845460--16845511 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16845450 GTTTTCTTAG
16845460 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16845486 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16845512 TATTGGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16845873 original size:26 final size:26
Alignment explanation
Indices: 16845843--16845893 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16845833 GACTTAGGCA
16845843 TACGGAGTTCA-TCCTCAGTCTAAGAG
1 TACGGAGTTCATTCC-CAGTCTAAGAG
16845869 TACGGAGTTCATTCCCAGTCTAAGA
1 TACGGAGTTCATTCCCAGTCTAAGA
16845894 TCGGACCGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGAG
Found at i:16848231 original size:26 final size:26
Alignment explanation
Indices: 16848201--16848253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16848191 GTTGACTTAG
*
16848201 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16848227 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16848253 G
1 G
16848254 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16848706 original size:159 final size:158
Alignment explanation
Indices: 16848291--16848885 Score: 537
Period size: 158 Copynumber: 3.8 Consensus size: 158
16848281 TAGGATCGGT
*
16848291 AGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAACCGACTAAGCGC
1 AGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTAAGCGC
* * * * * *
16848356 CTGCAA-GCCCGTTTCGTGGGTTGGCTTAGGCTTAGGGAATTGATTCCATGTCTAAGCCCCAGCT
66 CCG-AACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT
* **
16848420 GGACCGATGGTTGTGGTAGCGAGACCGGT
130 GGACAGATGGTTGTGGTAGCGAGACCGCC
* * * * * * * *
16848449 AGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGAGCATTCTGCCTCTCCAGTCGACTGAGCGC
1 AGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTAAGCGC
*
16848514 CC-ACACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-T
66 CCGA-ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT
*
16848577 CGGATAGATGGTTGTGGTAGC-AGGACCGCC
130 -GGACAGATGGTTGTGGTAGCGA-GACCGCC
** * * * * *
16848607 AGCGGGTAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCTAGCCGACTCAGCA
1 AGCACGCAGAG-GGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTAAGCG
** * * **
16848672 CCCGAACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATG--TAAG-ATCAG
65 CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC-ATGTCTAAGCCCCAG
* * * ** * * *
16848734 ATCGGACTGAGGGTTACGGCAGC-AGGATCGAC
128 CT-GGACAGATGGTTGTGGTAGCGA-GACCGCC
* * * * * * * *
16848766 AGCACGTAGGGGGGATCGGG-CTGGTCCCCGACTTACGCATTCTGCCTCTCC-GATCGACTGAGT
1 AGCACGCAGAGGGGATCGGGTC-GATCCCCGACTTGCGCATTATGCCTCTCCAG-CCGACTAAGC
* * *
16848829 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGG-GTTCGTTCCATATCTAA
64 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GGAGTTCATTCCATGTCTAA
16848886 ACATATGGAG
Statistics
Matches: 356, Mismatches: 67, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 7 0.02
158 221 0.62
159 119 0.33
160 3 0.01
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTAAGCGC
CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTG
GACAGATGGTTGTGGTAGCGAGACCGCC
Found at i:16849121 original size:26 final size:26
Alignment explanation
Indices: 16849071--16849122 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16849061 TGACTTAGGC
* *
16849071 ATACGGAGTTCATCCCTAGTGTAAGA
1 ATACGGAGTTCATCCCTAATCTAAGA
16849097 ATACGGAGTTCATTCCC-AATCTAAGA
1 ATACGGAGTTCA-TCCCTAATCTAAGA
16849123 TCAGACCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCTAATCTAAGA
Found at i:16850099 original size:26 final size:26
Alignment explanation
Indices: 16850063--16850115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16850053 GTTGACTTAG
*
16850063 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16850089 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16850115 G
1 G
16850116 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16850281 original size:26 final size:25
Alignment explanation
Indices: 16850245--16850296 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16850235 TTTGGCTTAG
16850245 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
16850271 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
16850296 G
1 G
16850297 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:16850882 original size:25 final size:25
Alignment explanation
Indices: 16850854--16850901 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16850844 GTTGACTTAG
* *
16850854 GCATACGGAGTTTATCCCCAGTCAA
1 GCATACAGAGTTCATCCCCAGTCAA
*
16850879 GCATACAGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATCCCCAGTC
16850902 TAAGATCAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCAGTCAA
Found at i:16851721 original size:159 final size:158
Alignment explanation
Indices: 16851380--16851782 Score: 348
Period size: 159 Copynumber: 2.5 Consensus size: 158
16851370 CCCAGTCTAA
*** * * *
16851380 GCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGGATCGAGGGTTGCGGTAGCAGGATTCGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAATCGGACCGAGGGTTGCGGCAGCAGGATCCGTA
* * * *
16851445 GCACGGAGAAGGGATCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCGCC
66 GCACGCAGAAGGGACCGGGCTGATCCTCAGCTTACGCATTATGCCTCTCCGACCGGCTAAGCGCC
* ** **
16851510 CGCATGCCCGTTTCGTGGGTTGGCTTAG
131 CACACACCCGTTTCGCAGGTTGGCTTAG
* * * * * **
16851538 GCATAGGGAGTTCATT-ACATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGA-CCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCCAATCGGACCGAGGGTTGCGGCAGCAGGATCCG-
* * * * *
16851601 TAGCACGCAGAGGGGGACCGGGCTGATCC-CTAGCTTGCGCATTATGCCTCTCCGGCCGGTTCAG
64 TAGCACGCAGA-AGGGACCGGGCTGATCCTC-AGCTTACGCATTATGCCTCTCCGACCGGCTAAG
* * *
16851665 TGCCCACACACCTGTTTTGCAGGTTGAG-TTAG
127 CGCCCACACACCCGTTTCGCAGGTTG-GCTTAG
**** * * * * *
16851697 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACTGAGGGTTACGACAGCAGGAT-CGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAATCGGACCGAGGGTTGCGGCAGCAGGATCCG-T
*
16851761 AGCACGCAAGGAGGGACCGGGC
65 AGCACGC-AGAAGGGACCGGGC
16851783 CGGTCCCCGA
Statistics
Matches: 189, Mismatches: 48, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 55 0.29
159 125 0.66
160 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCCAATCGGACCGAGGGTTGCGGCAGCAGGATCCGTA
GCACGCAGAAGGGACCGGGCTGATCCTCAGCTTACGCATTATGCCTCTCCGACCGGCTAAGCGCC
CACACACCCGTTTCGCAGGTTGGCTTAG
Found at i:16851739 original size:501 final size:501
Alignment explanation
Indices: 16850780--16852109 Score: 1418
Period size: 501 Copynumber: 2.6 Consensus size: 501
16850770 TACCACCCGT
* * **
16850780 TCGATTCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGAG
1 TCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGACTGAGTGCCCGCACGCTCGTTTCATGAG
*
16850845 TTGACTTAGGCATACGGAGTTTATCCCCAGTC-AAGCATACAGAGTTCATTCCCAGTCTAAGA-T
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATT
* * ** ** * *
16850908 CAGATCGGACCGAGGGTTCCGACAGTTGGATCGGTAGCACGCA-AGGGGGATCGGGCCGAT-CTC
131 GA-ATCGGACCGAGGGTTGCGGTAGCAGGATC-GTAGCACGCAGA-AGGGATCGGGCTGATCCTC
* * * * *
16850971 TGGCTTACGCATTCTTCCTCTCTGGTCGGCTGAGCGACCGCATGCCTATTTCGTGGGTTGGCTTA
193 -GGCTTACGCATTCTGCCTCTCAGGCCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTA
* * * *
16851036 AGCATAGGGAGTTCAATCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCAGCACCGGC
257 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGCACCGAC
* * * * *
16851101 AGCACACAGAGGGGGATCGGATCGATCCCCGACTTGTGCATTATGCCTTTTCGGCCGACTCAACA
322 AGCACACAGAGGGGGACCGGATCGATCCCAGACTTGCGCATTATGCCTCTCCGGCCGACTCAACA
** * ** * *
16851166 CCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCTAGTCTAAGATCAGATC
387 CCCACACCCTCGTTTCGCAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC
* ** * * *
16851231 AGACTGAGGGTTGCGGTAGTAGGATCGACAGCACGCAAGG-TGGACTAGG
452 AGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAAGGAGGGACCAGG
* * *
16851280 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGATTGAGTGCCCGCACGCTCGTTTCATTAG
1 TCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGACTGAGTGCCCGCACGCTCGTTTCATGAG
* *
16851345 TTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATT
* *
16851410 GAATCGGATCGAGGGTTGCGGTAGCAGGATTCGTAGCACGGAGAAGGGATCGGGCTGATCCTCGG
131 GAATCGGACCGAGGGTTGCGGTAGCAGGA-TCGTAGCACGCAGAAGGGATCGGGCTGATCCTCGG
* * * *
16851475 CTTACGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGC
195 CTTACGCATTCTGCCTCTCAGGCCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGC
* ** * *
16851540 ATAGGGAGTTCATTACATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGATAGC
260 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGCACCGACAGC
* * ** ***
16851605 ACGCAGAGGGGGACCGG-GCTGATCCCTAG-CTTGCGCATTATGCCTCTCCGGCCGGTTCAGTGC
325 ACACAGAGGGGGACCGGATC-GATCCC-AGACTTGCGCATTATGCCTCTCCGGCCGACTCAACAC
* * * ** *
16851668 CCACACACCT-GTTTTGCAGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATT
388 CCACAC-CCTCGTTTCGCAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC
* *
16851732 GGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAAGGAGGGACCGGG
452 AGACTGAGGGTTACGACAGCAGGATCGACAGCACGCAAGGAGGGACCAGG
* * * * ** * * * * ** *
16851782 CCGGTCCCCGACTTGTGCATTCTGCCTCTCCAGTCAACTGATTGCCCGCACACTCATTTTGTGGG
1 TCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGACTGAGTGCCCGCACGCTCGTTTCATGAG
* * *
16851847 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGAT
66 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
16851911 CGGACCAGACCGAGGGTTGCAGTAACAGGACCAGTAGTAGGATCGATAGCTCGCAGGGAGGGATC
130 TGAATCGGACCGAGGGTT---G---C--G----GTAGCAGGATCG-TAGCACGCA-GAAGGGATC
* *** * * * * * *
16851976 GGGCTGATCCCCGGCTTGTACATTCTGCCTATCAGGCAGGCTGAGCACCCGCACGCTCATTTCAT
181 GGGCTGATCCTCGGCTTACGCATTCTGCCTCTCAGGCCGGCTGAGCGCCCGCATGCCCATTTCGT
* * * *
16852041 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTA
246 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
16852106 GCAG
311 GCAG
16852110 GACCAGCAGC
Statistics
Matches: 685, Mismatches: 121, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
500 89 0.13
501 320 0.47
502 134 0.20
505 1 0.00
508 1 0.00
510 1 0.00
513 3 0.00
514 15 0.02
515 121 0.18
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (501 bp):
TCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGACTGAGTGCCCGCACGCTCGTTTCATGAG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATT
GAATCGGACCGAGGGTTGCGGTAGCAGGATCGTAGCACGCAGAAGGGATCGGGCTGATCCTCGGC
TTACGCATTCTGCCTCTCAGGCCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGCACCGACAGCA
CACAGAGGGGGACCGGATCGATCCCAGACTTGCGCATTATGCCTCTCCGGCCGACTCAACACCCA
CACCCTCGTTTCGCAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGAC
TGAGGGTTACGACAGCAGGATCGACAGCACGCAAGGAGGGACCAGG
Found at i:16852191 original size:171 final size:171
Alignment explanation
Indices: 16851915--16852251 Score: 408
Period size: 171 Copynumber: 2.0 Consensus size: 171
16851905 TAAGATCGGA
* * * * *
16851915 CCAGACCGAGGGTTGCAGTAACAGGACCAGTAGTAGGATCGATAGCTCGCAGGGAGGGATCGGGC
1 CCAGACCGAGGGTTGCAGTAACAGGACCAGCAGCAGGATCGATAGCACACAGGGAGGGACCGGGC
* * * * * * *
16851980 TGATCCCCGGCTTGTACATTCTGCCTATCAGGCAGGCTGAGCACCCGCACGCTCATTTCATGGGT
66 TGATCCCCGACTTGCACATTATACCTATCAGACAGGCTGAGCACCCACACACTCATTTCATGGGT
* * * *
16852045 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCCCAG
131 TGACCTAGGCATACGGAGTGCATCCCCA-GTCTAAGCCCCAG
** * * *
16852086 CCAGACCGAGGGTTGTGGTAGCAGGACCAGCAGCAGGATTGGTAGCACACAGAGG-GGGACCGGG
1 CCAGACCGAGGGTTGCAGTAACAGGACCAGCAGCAGGATCGATAGCACACAG-GGAGGGACCGGG
* * * * *
16852150 CTGATCCCCGACTTGCGCATTATACCTCTCCGACCGGCTGAGCACCCACACACTCATTTTATGGG
65 CTGATCCCCGACTTGCACATTATACCTATCAGACAGGCTGAGCACCCACACACTCATTTCATGGG
16852215 TTGACCTAGGCATACGGAGTGCATCCCCAGTCTAAGC
130 TTGACCTAGGCATACGGAGTGCATCCCCAGTCTAAGC
16852252 ATACAGAGTT
Statistics
Matches: 138, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
171 133 0.96
172 5 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (171 bp):
CCAGACCGAGGGTTGCAGTAACAGGACCAGCAGCAGGATCGATAGCACACAGGGAGGGACCGGGC
TGATCCCCGACTTGCACATTATACCTATCAGACAGGCTGAGCACCCACACACTCATTTCATGGGT
TGACCTAGGCATACGGAGTGCATCCCCAGTCTAAGCCCCAG
Found at i:16852260 original size:26 final size:25
Alignment explanation
Indices: 16852224--16852275 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16852214 GTTGACCTAG
*
16852224 GCATACGGAGTGCATCCCCAGTCTAA
1 GCATACAGAGTGCAT-CCCAGTCTAA
* *
16852250 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTGCATCCCAGTCTAA
16852275 G
1 G
16852276 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACAGAGTGCATCCCAGTCTAA
Found at i:16852753 original size:26 final size:26
Alignment explanation
Indices: 16852724--16852776 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16852714 GTTGGCTTAG
*
16852724 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16852750 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16852776 G
1 G
16852777 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16853382 original size:26 final size:25
Alignment explanation
Indices: 16853353--16853404 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16853343 TTTGGCTTAG
16853353 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
* * *
16853379 GCATATGGAGTTCATTTCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
16853404 G
1 G
16853405 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:16853769 original size:626 final size:629
Alignment explanation
Indices: 16852538--16853786 Score: 1810
Period size: 629 Copynumber: 2.0 Consensus size: 629
16852528 CTCAGTGCCA
16852538 GCACACTCATTTCGTTGGTTGACTTATACATACGGAGTTAATTCCTAGTCTAAGATCAGACCGAA
1 GCACACTCATTTCGTTGGTTGACTTATACATACGGAGTTAATTCCTAGTCTAAGATCAGACCGAA
* * * * * * *
16852603 CCGAGGGTTGCAGCAGCAACATCGACAGCACGTAGGAGGGGACCCGATCGATCCTCGACTTGCAC
66 CCAAGGGTTACAGCAGCAACATCGACAGCACGCAGGAGGGGACCAGACCAATCCCCGACTTGCAC
* * *
16852668 ATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGTTCATTTCGTGGGTTGGCTTAGGCATACGGA
131 ATTCTGCCTCTCCGGCCAACTGAGCACCCGTACGTTCATTTCGTGGGTTGGCTTAGGCATACGAA
*
16852733 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACAT
196 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTACACAT
* * * *
16852798 GCTGGGCTTGGGCATGTGCTAGTGCCACATTTTTTTCGCTGGGGCACCATCGTCGGAGCATCGTC
261 GCTGGGCTTGGGCATGTACTAGTGCCACATTTTTTTCGCCGAGGCACCATCGTCGAAGCATCGTC
** * *
16852863 GGAGAGCCTAATGGACAGCATTGGGGGTTCCGACGATTGGGGGGGCCGAGGTGGTGTGCGCACAT
326 GGAGAGCCTAACCGACAGCATTGGGGGTTCCAACGATTGGGGGGGCCGAGGGGGTGTGCGCACAT
*
16852928 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
391 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
16852993 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGTCAGTAGCCATTAAAGTGTC
456 ACTCACACCCCCTTAAAGAGCATTTGAGATTTAATAGGTTGACTGCCAGTAGCCATTAAAGTGTC
* * * * * ** *
16853058 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTCTCCATTTTGAGTTTTTAGCTTAATT
521 TGAAATGGAGACACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGAATT
16853123 TGTTTATGCATGCCAACAAAAATAAAAGGATCACCTCTGCGCCC
586 TGTTTATGCATGCCAACAAAAATAAAAGGATCACCTCTGCGCCC
* * * * *
16853167 GCACGCTCATTTC-TTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTTTAAGATCGGACC-A
1 GCACACTCATTTCGTT-GGTTGACTTATACATACGGAGTTAATTCCTAGTCTAAGATCAGACCGA
* * ** * * * *
16853230 GACCAAGGGTTACGGTAGCAGGATTGACAGCACGCAGGGGGGGACTAGGCCAATCCCCGACTTGC
65 -ACCAAGGGTTACAGCAGCAACATCGACAGCACGCAGGAGGGGACCAGACCAATCCCCGACTTGC
* * * * *
16853295 GCATTCTGCCTCTCCGGCCAATTGAGCACCCGTACGCTT-GTTTTGTGGTTTGGCTTAGGCATAC
129 ACATTCTGCCTCTCCGGCCAACTGAGCACCCGTACG-TTCATTTCGTGGGTTGGCTTAGGCATAC
** *
16853359 GAAGTTCATTCCATGTCTAAGCATATGGAGTTCATT-TCAGTCTAAGATTTTGAGCCACGGTACA
193 GAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTACA
* * *
16853423 CATGCTGGGCTTGGGCATGTATTGGTGCCACATTTTTTTCGCCCGAGGCAGCATCGTCGAAGCAT
258 CATGCTGGGCTTGGGCATGTACTAGTGCCACATTTTTTTCG-CCGAGGCACCATCGTCGAAGCAT
* * * *
16853488 CGTCGGAGAGCCTAACCGACGGCATTGGGGGTTCTAATGGTT-GGGGGG-CG-GGGGGTGTGCGC
322 CGTCGGAGAGCCTAACCGACAGCATTGGGGGTTCCAACGATTGGGGGGGCCGAGGGGGTGTGCGC
*
16853550 ACGTGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
387 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
16853615 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAATTGGTTGGCTGCCTGTAGCCATTAAAG
452 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAATAGGTTGACTGCCAGTAGCCATTAAAG
16853680 TGTCTGAAATGGAGACACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCAAGTTTTTAGCTG
517 TGTCTGAAATGGAGACACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCAAGTTTTTAGCTG
* * * *
16853745 AATTTTTTTGTGCATGCCAACAAAAATACAAGGGTCACCTCT
582 AATTTGTTTATGCATGCCAACAAAAATAAAAGGATCACCTCT
16853787 ACAAAATTTG
Statistics
Matches: 549, Mismatches: 67, Indels: 11
0.88 0.11 0.02
Matches are distributed among these distances:
626 228 0.42
627 2 0.00
628 73 0.13
629 244 0.44
630 2 0.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (629 bp):
GCACACTCATTTCGTTGGTTGACTTATACATACGGAGTTAATTCCTAGTCTAAGATCAGACCGAA
CCAAGGGTTACAGCAGCAACATCGACAGCACGCAGGAGGGGACCAGACCAATCCCCGACTTGCAC
ATTCTGCCTCTCCGGCCAACTGAGCACCCGTACGTTCATTTCGTGGGTTGGCTTAGGCATACGAA
GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTACACAT
GCTGGGCTTGGGCATGTACTAGTGCCACATTTTTTTCGCCGAGGCACCATCGTCGAAGCATCGTC
GGAGAGCCTAACCGACAGCATTGGGGGTTCCAACGATTGGGGGGGCCGAGGGGGTGTGCGCACAT
GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTAATAGGTTGACTGCCAGTAGCCATTAAAGTGTC
TGAAATGGAGACACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGAATT
TGTTTATGCATGCCAACAAAAATAAAAGGATCACCTCTGCGCCC
Found at i:16854419 original size:26 final size:25
Alignment explanation
Indices: 16854378--16854429 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
16854368 GTTGACTTAG
16854378 GCATACGAGTTCATT-CCATGTCTAA
1 GCATACGAGTTCATTCCCA-GTCTAA
*
16854403 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
16854429 G
1 G
16854430 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:16855071 original size:159 final size:158
Alignment explanation
Indices: 16854802--16855112 Score: 374
Period size: 159 Copynumber: 2.0 Consensus size: 158
16854792 TAAGATCGAA
* *
16854802 CCAGACCGAGGGTTACGGTAGTAGGATCGGCAGCACACAGGGGGGAATGGGCCGATCCCCGGCTT
1 CCAGACCGAGGGTTACGGCAGTAGGACCGGCAGCACACAGGGGGGAATGGGCCGATCCCCGGCTT
* * ** * * *
16854867 GCTCATTCTGCCTCTCCAATCGGTTGAGCGCCCGCACACCTATTTCTTGGGTTGGCTTAGGCATA
66 GCGCATTATGCCTCTCCAATCGACTCAGCGCCCGCACACCTATTTCGTGGGTTGACTTAGGCATA
**
16854932 GGGAGTTCATT-CCATGTCTAAGCCCCAG
131 CAGAGTTCATTCCCA-GTCTAAGCCCCAG
** * * * * *
16854960 CCAGACCGAGGGTTGTGGCAGTGGGACCGGCAGTACGCAGAGGGGGATTGTGCCGATCCCCGGCT
1 CCAGACCGAGGGTTACGGCAGTAGGACCGGCAGCACACAG-GGGGGAATGGGCCGATCCCCGGCT
* * * * *
16855025 TGCGCATTATGGCTCTTCGATCGACTCAGCGCCCGCAC-GCTCATTTCGTGGGTTGACTTATGCA
65 TGCGCATTATGCCTCTCCAATCGACTCAGCGCCCGCACACCT-ATTTCGTGGGTTGACTTAGGCA
16855089 TACAGAGTTCATTCCCAGTCTAAG
129 TACAGAGTTCATTCCCAGTCTAAG
16855113 ATCAGACCGA
Statistics
Matches: 127, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 35 0.28
159 89 0.70
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CCAGACCGAGGGTTACGGCAGTAGGACCGGCAGCACACAGGGGGGAATGGGCCGATCCCCGGCTT
GCGCATTATGCCTCTCCAATCGACTCAGCGCCCGCACACCTATTTCGTGGGTTGACTTAGGCATA
CAGAGTTCATTCCCAGTCTAAGCCCCAG
Found at i:16855132 original size:159 final size:158
Alignment explanation
Indices: 16854829--16855273 Score: 351
Period size: 159 Copynumber: 2.8 Consensus size: 158
16854819 GTAGTAGGAT
* * ** *
16854829 CGGCAGCACACAGGGGGGAATGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCAATCGGTTGA
1 CGGCAGCACACAGGGGGGAATGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAATCGACTCA
* * ** *
16854894 GCGCCCGCACACCTATTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GCGCCCGCACACCTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCA
* *
16854959 GCCAGACCGAGGGTTGTGGCAGTGGGAC
131 GCCAGAACGAGGGTTGTGACAGTGGGAC
* * * * * * *
16854987 CGGCAGTACGCAGAGGGGGATTGTGCCGATCCCCGGCTTGCGCATTATGGCTCTTCGATCGACTC
1 CGGCAGCACACAG-GGGGGAATGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAATCGACTC
* *
16855052 AGCGCCCGCAC-GCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-A
65 AGCGCCCGCACACCT-ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGCA
* * * * *
16855114 TCAGACC-GAAATGTGGGTTGTGACAGTAGGAT
128 CCAG-CCAG-AACGAGGGTTGTGACAGTGGGAC
* * * *** * * * * *** * *
16855146 TGACAGCACGCAGGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTTCCTCTCCTGCCGGCTG
1 CGGCAGCACACA-GGGGGGAATGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAATCGACTC
* * * * * * * *
16855211 AGTGCCCGCAC-GCTCGTTTCATGGGTTGGCCTAGGCATACGGAGTTCATTCCATTTCTAAGCA
65 AGCGCCCGCACACCT-ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
16855274 TACGGAGTTC
Statistics
Matches: 227, Mismatches: 52, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 20 0.09
159 202 0.89
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CGGCAGCACACAGGGGGGAATGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAATCGACTCA
GCGCCCGCACACCTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCA
GCCAGAACGAGGGTTGTGACAGTGGGAC
Found at i:16855295 original size:26 final size:26
Alignment explanation
Indices: 16855245--16855297 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16855235 GTTGGCCTAG
*
16855245 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16855271 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16855297 G
1 G
16855298 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16855997 original size:26 final size:26
Alignment explanation
Indices: 16855967--16856019 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16855957 GTTGACTTAG
*
16855967 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
16855993 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16856019 G
1 G
16856020 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16856339 original size:26 final size:26
Alignment explanation
Indices: 16856309--16856361 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16856299 GTTGACTTAG
*
16856309 GCATACATAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** *
16856335 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16856361 G
1 G
16856362 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16861664 original size:159 final size:158
Alignment explanation
Indices: 16861441--16861802 Score: 363
Period size: 158 Copynumber: 2.3 Consensus size: 158
16861431 CATATGCCTG
** * * * *
16861441 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGGCTGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACTAACCAAGGGTT
* ** * * * * *
16861506 GTGGCAACGGGACCGACAGCATGTAAAGGG-GGACCAGG-TCGATCTCTGACTT-TCGCATTATG
66 GCGGCAACAAGACCGACAACACG--AAGGGTGGACC-GGACCGATCCCCGACTTAT-GCATTATG
* * * *
16861568 CCTCTCCAGTCGGTTCAGCGCCCGCATGCTCA
127 CCTCTCCAGCCGGCTCAGCACCCGCACGCTCA
* * * * *
16861600 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAG-ATCAGACTAAACTAAGGGT
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACT-AACCAAGGGT
* * ** * *
16861664 TGCGGCAGCAAGATCGACAACACGCGGGGTGGACCGGACCGATCCCCGACTTATGCGTTCTGCCT
65 TGCGGCAACAAGACCGACAACACGAAGGGTGGACCGGACCGATCCCCGACTTATGCATTATGCCT
* * *
16861729 CTCCGGCCGGCTGAGCACCCGCACGCTCG
130 CTCCAGCCGGCTCAGCACCCGCACGCTCA
16861758 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
16861803 GATACGGAGT
Statistics
Matches: 164, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.03
158 94 0.57
159 65 0.40
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACTAACCAAGGGTT
GCGGCAACAAGACCGACAACACGAAGGGTGGACCGGACCGATCCCCGACTTATGCATTATGCCTC
TCCAGCCGGCTCAGCACCCGCACGCTCA
Done.